RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 041511
         (147 letters)



>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 100

 Score =  115 bits (291), Expect = 3e-35
 Identities = 33/85 (38%), Positives = 54/85 (63%)

Query: 43  KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSR 102
           K + G+VVS+KMQK+V V V+R F H +Y + +KR+ K++AHD   +  +GD V +  SR
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESR 62

Query: 103 PLSKHKHWLVAEILKKARIYVPPSA 127
           P+SK K + V  +++  R+ +    
Sbjct: 63  PISKRKRFRVLRLVESGRMDLVEKY 87


>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli
           [TaxId: 562]}
          Length = 78

 Score =  109 bits (275), Expect = 4e-33
 Identities = 38/77 (49%), Positives = 56/77 (72%)

Query: 43  KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSR 102
           +++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENNEC IGD V +   R
Sbjct: 1   RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECR 60

Query: 103 PLSKHKHWLVAEILKKA 119
           PLSK K W +  +++KA
Sbjct: 61  PLSKTKSWTLVRVVEKA 77


>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 81

 Score =  107 bits (270), Expect = 2e-32
 Identities = 35/79 (44%), Positives = 52/79 (65%)

Query: 41  QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDP 100
           Q K  VG VVS+KM K++ V V+    H +Y + VK + K+ AHDE+NE  +GD V++  
Sbjct: 1   QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIME 60

Query: 101 SRPLSKHKHWLVAEILKKA 119
           +RPLS  K + + EI++KA
Sbjct: 61  TRPLSATKRFRLVEIVEKA 79


>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
           [TaxId: 5664]}
          Length = 174

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 14/79 (17%)

Query: 53  KMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSRPLSKHKHWL- 111
             +   +V V       ++ R  KR        EN E  I   +  + +R   +    L 
Sbjct: 92  PERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEI-QCICEEEARDAYEDDIVLV 150

Query: 112 ------------VAEILKK 118
                       V EI ++
Sbjct: 151 RENDTLEQMAATVEEIRER 169


>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli
           [TaxId: 562]}
          Length = 113

 Score = 23.5 bits (50), Expect = 7.5
 Identities = 12/48 (25%), Positives = 15/48 (31%)

Query: 64  RLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPSRPLSKHKHWL 111
             + HKV +   +        D   E  I     LD  R  S    WL
Sbjct: 29  VRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWL 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.384 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 535,944
Number of extensions: 21706
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 6
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)