BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041513
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 13 LDVHEAQVQFALERG----LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLM 68
+D+ E +Q ERG L + G LS+ LP+ + F+ L WT L
Sbjct: 81 VDISEVXIQKGKERGEGPDLSFIKGDLSS--LPFENEQFEAIXAINSL-EWTEEPLRALN 137
Query: 69 EIDRVLRPGGYWVVS 83
EI RVL+ GY ++
Sbjct: 138 EIKRVLKSDGYACIA 152
>pdb|3TRK|A Chain A, Structure Of The Chikungunya Virus Nsp2 Protease
Length = 324
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 11 APLDVHEAQVQFALERGLPAMVGL--LSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLM 68
APL V A + LE GLPA +G L + P F + H +C+ L
Sbjct: 188 APLGVRGADYTYNLELGLPATLGRYDLVVINIHTP---FRIHHYQQCVDHAXKLQXLGGD 244
Query: 69 EIDRVLRPGGYWVVSGPPISWKTSYR 94
+ R+L+PGG ++ + +TS R
Sbjct: 245 SL-RLLKPGGSLLIRAYGYADRTSER 269
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 40 LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83
LP+P SFDV L + + L+E RVLRPGG VV
Sbjct: 89 LPFPGESFDVVLLFTTLEFVEDVERV-LLEARRVLRPGGALVVG 131
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 13 LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDR 72
LDV + ++ A +R + S+++LP+ S D R P + E+ R
Sbjct: 115 LDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSXDA--IIRIYAPCKA------EELAR 166
Query: 73 VLRPGGYWVVSGPP 86
V++PGG WV++ P
Sbjct: 167 VVKPGG-WVITATP 179
>pdb|3HCA|A Chain A, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
pdb|3HCA|B Chain B, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
Length = 289
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 12 PLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEID 71
P+DVH+ Q L G PA P P+ + A C + + P + L I
Sbjct: 156 PIDVHQPQ---PLGAGSPA----------PLPADALVSAFCLQAVSPDLASFQRALDHIT 202
Query: 72 RVLRPGGYWVVSG 84
+LRPGG+ ++ G
Sbjct: 203 TLLRPGGHLLLIG 215
>pdb|1YZ3|A Chain A, Structure Of Human Pnmt Complexed With Cofactor Product
Adohcy And Inhibitor Sk&f 64139
pdb|1YZ3|B Chain B, Structure Of Human Pnmt Complexed With Cofactor Product
Adohcy And Inhibitor Sk&f 64139
pdb|2AN3|A Chain A, Structure Of Pnmt With S-Adenosyl-L-Homocysteine And The
Semi-Rigid Analogue Acceptor Substrate
Cis-(1r,2s)-2-Amino-1-Tetralol.
pdb|2AN3|B Chain B, Structure Of Pnmt With S-Adenosyl-L-Homocysteine And The
Semi-Rigid Analogue Acceptor Substrate
Cis-(1r,2s)-2-Amino-1-Tetralol.
pdb|2AN4|A Chain A, Structure Of Pnmt Complexed With S-Adenosyl-L-Homocysteine
And The Acceptor Substrate Octopamine
pdb|2AN4|B Chain B, Structure Of Pnmt Complexed With S-Adenosyl-L-Homocysteine
And The Acceptor Substrate Octopamine
pdb|2AN5|A Chain A, Structure Of Human Pnmt Complexed With S-Adenosyl-
Homocysteine And An Inhibitor, Trans-(1s,2s)-2-Amino-1-
Tetralol
pdb|2AN5|B Chain B, Structure Of Human Pnmt Complexed With S-Adenosyl-
Homocysteine And An Inhibitor, Trans-(1s,2s)-2-Amino-1-
Tetralol
pdb|2G8N|A Chain A, Structure Of Hpnmt With Inhibitor 3-Hydroxymethyl-7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2G8N|B Chain B, Structure Of Hpnmt With Inhibitor 3-Hydroxymethyl-7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2G70|A Chain A, Structure Of Human Pnmt In Complex With Inhibitor
3-hydroxymethyl-7- Nitro-thiq And Adomet (sam)
pdb|2G70|B Chain B, Structure Of Human Pnmt In Complex With Inhibitor
3-hydroxymethyl-7- Nitro-thiq And Adomet (sam)
pdb|2G71|A Chain A, Structure Of Hpnmt With Inhibitor
3-fluoromethyl-7-trifluoropropyl- Thiq And Adohcy
pdb|2G71|B Chain B, Structure Of Hpnmt With Inhibitor
3-fluoromethyl-7-trifluoropropyl- Thiq And Adohcy
pdb|2G72|A Chain A, Structure Of Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adomet
pdb|2G72|B Chain B, Structure Of Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adomet
pdb|2ONY|A Chain A, Structure Of Hpnmt With Inhibitor
7-(N-4-Chlorophenylaminosulfonyl)- Thiq And Adohcy
pdb|2ONY|B Chain B, Structure Of Hpnmt With Inhibitor
7-(N-4-Chlorophenylaminosulfonyl)- Thiq And Adohcy
pdb|3HCB|A Chain A, Crystal Structure Of Hpnmt In Complex With Noradrenochrome
And Adohcy
pdb|3HCB|B Chain B, Crystal Structure Of Hpnmt In Complex With Noradrenochrome
And Adohcy
pdb|3HCC|A Chain A, Crystal Structure Of Hpnmt In Complex With Anti-9-Amino-5-
(Trifluromethyl) Benzonorbornene And Adohcy
pdb|3HCC|B Chain B, Crystal Structure Of Hpnmt In Complex With Anti-9-Amino-5-
(Trifluromethyl) Benzonorbornene And Adohcy
pdb|3HCD|A Chain A, Crystal Structure Of Hpnmt In Complex With Noradrenaline
And Adohcy
pdb|3HCD|B Chain B, Crystal Structure Of Hpnmt In Complex With Noradrenaline
And Adohcy
pdb|3HCF|A Chain A, Crystal Structure Of Hpnmt In Complex With
3-Trifluoromethyl Phenylethanolamine And Adohcy
pdb|3HCF|B Chain B, Crystal Structure Of Hpnmt In Complex With
3-Trifluoromethyl Phenylethanolamine And Adohcy
pdb|3KPJ|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And Bound
Phosphate
pdb|3KPJ|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And Bound
Phosphate
pdb|3KPU|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Quinolinol
pdb|3KPU|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Quinolinol
pdb|3KPV|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And Adenine
pdb|3KPV|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And Adenine
pdb|3KPW|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
1-Aminoisoquinoline
pdb|3KPW|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
1-Aminoisoquinoline
pdb|3KPY|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chlorooxindole
pdb|3KPY|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chlorooxindole
pdb|3KQM|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Bromo-1h-Imidazole
pdb|3KQM|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Bromo-1h-Imidazole
pdb|3KQO|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chloropurine
pdb|3KQO|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chloropurine
pdb|3KQP|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Aminoquinoline
pdb|3KQP|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Aminoquinoline
pdb|3KQQ|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Hydroxynicotinic Acid
pdb|3KQQ|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Hydroxynicotinic Acid
pdb|3KQS|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Aminobenzimidazole
pdb|3KQS|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Aminobenzimidazole
pdb|3KQT|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1- Methylbenzimidazole
pdb|3KQT|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1- Methylbenzimidazole
pdb|3KQV|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
Formanilide
pdb|3KQV|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
Formanilide
pdb|3KQW|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chlorobenzimidazole
pdb|3KQW|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chlorobenzimidazole
pdb|3KQY|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-7-Ol
pdb|3KQY|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-7-Ol
pdb|3KR0|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-6-Ol
pdb|3KR0|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-6-Ol
pdb|3KR1|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chloro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR1|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chloro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR2|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Fluoro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR2|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Fluoro-1h- Benzo[d]imidazol-2-Amine
pdb|4DM3|A Chain A, Crystal Structure Of Human Pnmt In Complex Adohcy,
Resorcinol And Imidazole
pdb|4DM3|B Chain B, Crystal Structure Of Human Pnmt In Complex Adohcy,
Resorcinol And Imidazole
Length = 289
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 12 PLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEID 71
P+DVH+ Q L G PA P P+ + A C + P + L I
Sbjct: 156 PIDVHQPQ---PLGAGSPA----------PLPADALVSAFCLEAVSPDLASFQRALDHIT 202
Query: 72 RVLRPGGYWVVSG 84
+LRPGG+ ++ G
Sbjct: 203 TLLRPGGHLLLIG 215
>pdb|1HNN|A Chain A, Crystal Structure Of Human Pnmt Complexed With Sk&f 29661
And Adohcy(Sah)
pdb|1HNN|B Chain B, Crystal Structure Of Human Pnmt Complexed With Sk&f 29661
And Adohcy(Sah)
pdb|1N7I|A Chain A, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And The Inhibitor
Ly134046
pdb|1N7I|B Chain B, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And The Inhibitor
Ly134046
pdb|1N7J|A Chain A, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And An Iodinated
Inhibitor
pdb|1N7J|B Chain B, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And An Iodinated
Inhibitor
Length = 282
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 12 PLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEID 71
P+DVH+ Q L G PA P P+ + A C + P + L I
Sbjct: 156 PIDVHQPQ---PLGAGSPA----------PLPADALVSAFCLEAVSPDLASFQRALDHIT 202
Query: 72 RVLRPGGYWVVSG 84
+LRPGG+ ++ G
Sbjct: 203 TLLRPGGHLLLIG 215
>pdb|2OBF|A Chain A, Structure Of K57a Hpnmt With Inhibitor
3-Hydroxymethyl-7-(N-4- Chlorophenylaminosulfonyl)-Thiq
And Adohcy (Sah)
pdb|2OBF|B Chain B, Structure Of K57a Hpnmt With Inhibitor
3-Hydroxymethyl-7-(N-4- Chlorophenylaminosulfonyl)-Thiq
And Adohcy (Sah)
pdb|2ONZ|A Chain A, Structure Of K57a Hpnmt With Inhibitor 7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2ONZ|B Chain B, Structure Of K57a Hpnmt With Inhibitor 7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2OPB|A Chain A, Structure Of K57a Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adohcy
pdb|2OPB|B Chain B, Structure Of K57a Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adohcy
Length = 289
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 12 PLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEID 71
P+DVH+ Q L G PA P P+ + A C + P + L I
Sbjct: 156 PIDVHQPQ---PLGAGSPA----------PLPADALVSAFCLEAVSPDLASFQRALDHIT 202
Query: 72 RVLRPGGYWVVSG 84
+LRPGG+ ++ G
Sbjct: 203 TLLRPGGHLLLIG 215
>pdb|2DVZ|A Chain A, Structure Of A Periplasmic Transporter
Length = 314
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 137 HLHCIQKLKALKSPTFCVKSDPDAVWYTKMEPCVTPLPMVNEIKDVAGGALE 188
+ I+ + F V + P VWY + P TP +VN+++D A AL+
Sbjct: 219 RIDAIKDVPTFADAGFPVLNQP--VWYGLLAPKGTPXDVVNKLRDAAVVALK 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,059,203
Number of Sequences: 62578
Number of extensions: 369457
Number of successful extensions: 705
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 11
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)