Query 041513
Match_columns 294
No_of_seqs 327 out of 1875
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:56:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 4.5E-91 9.8E-96 680.1 16.3 271 1-283 136-408 (506)
2 COG2226 UbiE Methylase involve 99.5 3.6E-14 7.7E-19 129.8 6.8 77 7-84 75-156 (238)
3 PF08241 Methyltransf_11: Meth 99.4 2.9E-13 6.2E-18 103.0 4.3 74 8-82 20-95 (95)
4 PF01209 Ubie_methyltran: ubiE 99.3 1.2E-12 2.5E-17 119.5 5.7 75 9-84 74-153 (233)
5 PLN02232 ubiquinone biosynthes 99.3 3.3E-12 7.1E-17 109.6 7.3 72 12-84 2-81 (160)
6 PLN02233 ubiquinone biosynthes 99.2 2.7E-11 5.7E-16 112.0 7.8 75 9-84 100-182 (261)
7 KOG4300 Predicted methyltransf 99.2 2.2E-11 4.8E-16 108.8 6.0 112 9-149 101-219 (252)
8 KOG1540 Ubiquinone biosynthesi 99.1 2.9E-10 6.2E-15 104.5 7.1 74 10-84 133-214 (296)
9 PRK10258 biotin biosynthesis p 99.0 7.2E-10 1.6E-14 100.9 7.1 76 9-85 66-141 (251)
10 PRK05785 hypothetical protein; 98.9 5.2E-09 1.1E-13 94.8 7.5 67 8-78 75-141 (226)
11 PRK14103 trans-aconitate 2-met 98.9 4E-09 8.6E-14 96.5 6.8 74 8-85 54-127 (255)
12 PLN02244 tocopherol O-methyltr 98.9 5.9E-09 1.3E-13 99.9 8.2 76 8-84 142-223 (340)
13 PTZ00098 phosphoethanolamine N 98.8 8.4E-09 1.8E-13 95.4 6.8 77 9-85 77-157 (263)
14 PLN02396 hexaprenyldihydroxybe 98.8 6.4E-09 1.4E-13 99.3 5.4 76 9-85 155-236 (322)
15 PRK01683 trans-aconitate 2-met 98.7 2.7E-08 5.9E-13 90.7 8.0 75 9-85 57-131 (258)
16 PRK11873 arsM arsenite S-adeno 98.7 2.8E-08 6E-13 91.6 7.6 76 9-85 104-184 (272)
17 PRK11088 rrmA 23S rRNA methylt 98.7 2.2E-08 4.7E-13 92.8 6.9 70 9-86 114-183 (272)
18 PLN02490 MPBQ/MSBQ methyltrans 98.7 3.3E-08 7.1E-13 95.1 7.9 117 9-131 139-261 (340)
19 smart00138 MeTrc Methyltransfe 98.7 3E-08 6.6E-13 91.9 6.4 78 7-84 132-242 (264)
20 TIGR02072 BioC biotin biosynth 98.7 5.4E-08 1.2E-12 86.3 7.2 76 9-85 60-136 (240)
21 PLN02336 phosphoethanolamine N 98.7 6.2E-08 1.3E-12 96.2 8.2 77 8-85 290-370 (475)
22 PF13649 Methyltransf_25: Meth 98.6 1.1E-08 2.5E-13 80.3 2.1 72 7-78 24-101 (101)
23 TIGR02752 MenG_heptapren 2-hep 98.6 6.4E-08 1.4E-12 86.7 7.2 76 9-85 72-152 (231)
24 PRK11036 putative S-adenosyl-L 98.6 3.6E-08 7.9E-13 90.3 5.3 76 9-85 68-150 (255)
25 PRK08317 hypothetical protein; 98.6 1.2E-07 2.5E-12 83.9 7.8 76 9-85 46-125 (241)
26 PF13489 Methyltransf_23: Meth 98.5 4E-08 8.7E-13 81.8 2.8 72 9-86 46-117 (161)
27 PF13847 Methyltransf_31: Meth 98.5 1.4E-07 3E-12 79.5 5.6 75 9-85 30-111 (152)
28 TIGR00740 methyltransferase, p 98.5 1.9E-07 4.1E-12 84.6 6.6 76 8-85 80-162 (239)
29 COG2227 UbiG 2-polyprenyl-3-me 98.5 1.4E-07 2.9E-12 86.4 3.9 78 8-86 82-163 (243)
30 PRK15451 tRNA cmo(5)U34 methyl 98.4 3E-07 6.5E-12 84.1 6.0 76 8-85 83-165 (247)
31 PRK11207 tellurite resistance 98.4 4.6E-07 9.9E-12 80.2 6.9 74 9-83 54-133 (197)
32 PRK15068 tRNA mo(5)U34 methylt 98.4 5.9E-07 1.3E-11 85.7 7.6 74 9-84 147-226 (322)
33 PRK06922 hypothetical protein; 98.4 3.1E-07 6.8E-12 94.5 6.0 78 8-85 443-538 (677)
34 TIGR00477 tehB tellurite resis 98.4 5.2E-07 1.1E-11 79.7 6.6 75 8-83 53-132 (195)
35 smart00828 PKS_MT Methyltransf 98.4 5.5E-07 1.2E-11 80.3 6.4 75 9-85 25-105 (224)
36 PF08242 Methyltransf_12: Meth 98.4 9.5E-08 2.1E-12 74.4 1.2 73 7-80 20-99 (99)
37 KOG3010 Methyltransferase [Gen 98.4 2.6E-07 5.6E-12 84.6 4.2 70 10-82 58-135 (261)
38 TIGR00452 methyltransferase, p 98.4 8.7E-07 1.9E-11 84.4 7.4 74 9-84 146-225 (314)
39 PF12847 Methyltransf_18: Meth 98.4 5.8E-07 1.3E-11 71.0 4.9 76 9-85 27-112 (112)
40 TIGR03587 Pse_Me-ase pseudamin 98.3 8.9E-07 1.9E-11 79.1 6.6 74 8-84 68-142 (204)
41 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 2.5E-06 5.5E-11 75.0 7.5 75 9-84 66-143 (223)
42 PRK00216 ubiE ubiquinone/menaq 98.3 3.3E-06 7.2E-11 75.0 8.1 76 9-85 78-159 (239)
43 PRK06202 hypothetical protein; 98.2 3.1E-06 6.7E-11 76.3 7.1 75 8-84 89-166 (232)
44 PRK12335 tellurite resistance 98.2 2.6E-06 5.7E-11 79.6 6.7 76 8-84 143-223 (287)
45 PLN02336 phosphoethanolamine N 98.2 2.2E-06 4.7E-11 85.2 6.4 77 9-85 61-143 (475)
46 PRK00121 trmB tRNA (guanine-N( 98.2 4.4E-06 9.4E-11 74.3 7.1 76 9-85 66-157 (202)
47 PRK00107 gidB 16S rRNA methylt 98.2 1.2E-05 2.5E-10 71.3 9.6 92 9-124 71-167 (187)
48 COG4106 Tam Trans-aconitate me 98.1 1.3E-05 2.8E-10 72.7 8.6 158 9-194 56-214 (257)
49 KOG2940 Predicted methyltransf 98.1 2E-06 4.3E-11 78.6 2.9 72 12-84 100-174 (325)
50 PRK11705 cyclopropane fatty ac 98.1 6.4E-06 1.4E-10 80.4 6.6 73 9-84 192-267 (383)
51 PLN03075 nicotianamine synthas 98.0 1.1E-05 2.3E-10 76.4 7.0 75 9-84 151-233 (296)
52 PF03141 Methyltransf_29: Puta 98.0 1.2E-05 2.6E-10 80.3 7.0 101 2-123 385-488 (506)
53 TIGR00091 tRNA (guanine-N(7)-) 97.9 3.1E-05 6.7E-10 68.3 7.8 76 9-85 42-133 (194)
54 KOG1270 Methyltransferases [Co 97.9 7.4E-06 1.6E-10 76.0 3.8 72 9-84 113-195 (282)
55 PRK05134 bifunctional 3-demeth 97.9 2.2E-05 4.7E-10 70.5 6.5 76 9-85 72-152 (233)
56 PF05401 NodS: Nodulation prot 97.9 8.3E-06 1.8E-10 72.9 3.6 71 12-84 70-146 (201)
57 TIGR01983 UbiG ubiquinone bios 97.9 2.9E-05 6.3E-10 68.9 6.3 75 10-85 70-150 (224)
58 KOG1541 Predicted protein carb 97.8 7.5E-05 1.6E-09 68.0 7.7 76 9-85 74-161 (270)
59 PF07021 MetW: Methionine bios 97.8 2.2E-05 4.7E-10 69.9 4.2 75 9-87 38-112 (193)
60 PF05148 Methyltransf_8: Hypot 97.8 2.1E-05 4.6E-10 70.9 4.0 87 32-135 108-199 (219)
61 KOG1975 mRNA cap methyltransfe 97.8 3.6E-05 7.7E-10 73.4 5.7 76 10-86 143-239 (389)
62 TIGR02081 metW methionine bios 97.8 4.2E-05 9.1E-10 67.1 5.8 70 10-85 39-110 (194)
63 TIGR00537 hemK_rel_arch HemK-r 97.8 9.1E-05 2E-09 64.1 7.6 75 9-85 43-141 (179)
64 TIGR02469 CbiT precorrin-6Y C5 97.8 9.9E-05 2.1E-09 58.7 7.1 73 8-84 44-122 (124)
65 KOG3045 Predicted RNA methylas 97.7 4.7E-05 1E-09 70.7 5.2 87 32-135 214-305 (325)
66 TIGR00138 gidB 16S rRNA methyl 97.7 0.00029 6.3E-09 61.8 10.0 71 9-85 68-143 (181)
67 TIGR03840 TMPT_Se_Te thiopurin 97.7 9.7E-05 2.1E-09 66.6 7.0 77 8-84 57-152 (213)
68 COG4627 Uncharacterized protei 97.7 4.7E-06 1E-10 71.9 -1.5 54 35-88 36-90 (185)
69 COG4976 Predicted methyltransf 97.6 1.5E-05 3.2E-10 72.9 0.9 76 9-85 149-226 (287)
70 PF02353 CMAS: Mycolic acid cy 97.6 8.5E-05 1.8E-09 69.5 6.0 74 8-84 86-166 (273)
71 TIGR00406 prmA ribosomal prote 97.6 0.0002 4.3E-09 67.2 8.1 73 9-85 184-260 (288)
72 PRK14121 tRNA (guanine-N(7)-)- 97.6 0.00012 2.6E-09 71.7 6.7 76 8-84 147-235 (390)
73 PRK13944 protein-L-isoaspartat 97.6 0.00017 3.7E-09 64.1 7.0 69 9-84 99-173 (205)
74 cd02440 AdoMet_MTases S-adenos 97.6 0.00023 5E-09 52.8 6.6 76 8-83 22-103 (107)
75 TIGR02021 BchM-ChlM magnesium 97.6 7.8E-05 1.7E-09 66.5 4.5 72 9-83 79-157 (219)
76 TIGR02716 C20_methyl_CrtF C-20 97.6 0.0002 4.3E-09 67.3 7.4 74 9-85 175-255 (306)
77 PRK10611 chemotaxis methyltran 97.6 0.00013 2.7E-09 68.9 5.9 78 7-84 147-262 (287)
78 TIGR01177 conserved hypothetic 97.5 0.00021 4.5E-09 68.2 6.9 77 9-85 206-295 (329)
79 TIGR03438 probable methyltrans 97.5 0.0002 4.4E-09 67.5 6.6 78 8-85 89-178 (301)
80 PRK11188 rrmJ 23S rRNA methylt 97.5 0.00022 4.7E-09 64.0 6.5 54 30-84 93-165 (209)
81 PRK09489 rsmC 16S ribosomal RN 97.5 0.00057 1.2E-08 66.0 9.4 104 9-132 222-333 (342)
82 PRK00517 prmA ribosomal protei 97.4 0.0003 6.4E-09 64.5 6.6 66 10-85 145-214 (250)
83 PRK04266 fibrillarin; Provisio 97.4 0.00037 8.1E-09 63.4 6.9 73 9-85 98-177 (226)
84 PRK13255 thiopurine S-methyltr 97.4 0.00037 8E-09 63.1 6.8 75 8-82 60-153 (218)
85 PF03291 Pox_MCEL: mRNA cappin 97.4 0.00019 4E-09 69.0 4.9 76 10-85 88-187 (331)
86 PRK14967 putative methyltransf 97.4 0.00055 1.2E-08 61.5 7.6 76 9-85 61-160 (223)
87 PRK00377 cbiT cobalt-precorrin 97.4 0.00093 2E-08 58.9 8.9 73 9-85 67-146 (198)
88 PF05219 DREV: DREV methyltran 97.3 0.00059 1.3E-08 63.4 7.0 70 10-84 119-188 (265)
89 PRK13942 protein-L-isoaspartat 97.3 0.00072 1.6E-08 60.6 7.1 69 9-84 103-176 (212)
90 PRK14968 putative methyltransf 97.3 0.0021 4.5E-08 55.0 9.7 76 9-85 47-149 (188)
91 PRK08287 cobalt-precorrin-6Y C 97.3 0.0013 2.9E-08 57.2 8.4 70 9-84 57-131 (187)
92 TIGR03534 RF_mod_PrmC protein- 97.2 0.0018 4E-08 58.1 9.1 76 9-85 113-218 (251)
93 KOG1331 Predicted methyltransf 97.2 0.00021 4.5E-09 67.1 2.9 75 9-84 67-143 (293)
94 PF08003 Methyltransf_9: Prote 97.2 0.001 2.3E-08 63.2 7.6 72 11-84 145-219 (315)
95 PRK14901 16S rRNA methyltransf 97.2 0.0021 4.5E-08 63.8 10.0 76 9-85 279-385 (434)
96 PF01739 CheR: CheR methyltran 97.2 0.00044 9.4E-09 61.8 4.6 78 7-84 64-175 (196)
97 PLN02585 magnesium protoporphy 97.2 0.00079 1.7E-08 64.3 6.5 73 9-86 168-251 (315)
98 PRK10901 16S rRNA methyltransf 97.2 0.0019 4.1E-08 63.9 9.4 77 9-85 270-373 (427)
99 PF05175 MTS: Methyltransferas 97.2 0.0034 7.4E-08 54.1 9.6 74 10-85 58-141 (170)
100 PF03848 TehB: Tellurite resis 97.1 0.00076 1.7E-08 60.2 5.6 76 8-84 53-133 (192)
101 TIGR00563 rsmB ribosomal RNA s 97.1 0.0026 5.5E-08 62.9 9.6 78 9-87 264-371 (426)
102 PRK07580 Mg-protoporphyrin IX 97.1 0.00091 2E-08 59.4 5.9 70 9-81 87-163 (230)
103 PRK13256 thiopurine S-methyltr 97.1 0.0021 4.6E-08 58.7 8.2 77 8-84 66-163 (226)
104 PTZ00146 fibrillarin; Provisio 97.1 0.0014 3E-08 62.1 7.0 72 10-85 160-238 (293)
105 COG0500 SmtA SAM-dependent met 97.1 0.0025 5.4E-08 48.6 7.2 74 10-85 75-156 (257)
106 TIGR00080 pimt protein-L-isoas 97.0 0.0018 3.9E-08 57.8 6.8 69 10-85 105-178 (215)
107 PRK14904 16S rRNA methyltransf 97.0 0.0037 8E-08 62.2 9.5 78 9-87 277-380 (445)
108 KOG1269 SAM-dependent methyltr 97.0 0.0014 3E-08 63.9 5.9 73 11-84 137-215 (364)
109 PF06080 DUF938: Protein of un 96.9 0.0084 1.8E-07 54.0 10.3 42 43-85 99-142 (204)
110 COG2230 Cfa Cyclopropane fatty 96.9 0.0017 3.8E-08 61.1 5.9 74 8-84 96-176 (283)
111 PF13659 Methyltransf_26: Meth 96.9 0.00069 1.5E-08 53.7 2.8 78 8-85 24-116 (117)
112 PRK14903 16S rRNA methyltransf 96.9 0.0053 1.1E-07 61.0 9.3 79 9-87 264-369 (431)
113 TIGR00446 nop2p NOL1/NOP2/sun 96.8 0.0058 1.3E-07 56.6 8.7 79 9-87 98-202 (264)
114 PRK15001 SAM-dependent 23S rib 96.8 0.0031 6.7E-08 61.8 7.0 74 9-84 254-340 (378)
115 KOG2361 Predicted methyltransf 96.8 0.003 6.4E-08 58.3 6.2 77 8-84 98-183 (264)
116 PRK00312 pcm protein-L-isoaspa 96.7 0.0059 1.3E-07 54.2 7.4 70 9-85 102-176 (212)
117 TIGR00536 hemK_fam HemK family 96.5 0.014 3E-07 54.6 9.1 75 9-85 140-245 (284)
118 PRK09328 N5-glutamine S-adenos 96.5 0.014 3E-07 53.4 9.0 75 9-84 134-238 (275)
119 COG1041 Predicted DNA modifica 96.5 0.0055 1.2E-07 59.2 6.5 82 4-85 216-311 (347)
120 PF11968 DUF3321: Putative met 96.5 0.011 2.4E-07 53.7 7.6 88 35-134 90-193 (219)
121 TIGR03533 L3_gln_methyl protei 96.4 0.0089 1.9E-07 56.1 7.2 76 9-85 147-252 (284)
122 TIGR00438 rrmJ cell division p 96.4 0.0056 1.2E-07 53.4 5.5 69 10-84 60-146 (188)
123 PF07942 N2227: N2227-like pro 96.4 0.006 1.3E-07 57.2 5.7 91 35-128 151-244 (270)
124 PRK14902 16S rRNA methyltransf 96.4 0.023 4.9E-07 56.5 10.1 78 9-87 277-382 (444)
125 PRK00811 spermidine synthase; 96.4 0.019 4.1E-07 53.8 9.1 75 9-84 102-191 (283)
126 PRK07402 precorrin-6B methylas 96.4 0.021 4.6E-07 50.1 8.8 72 9-85 66-143 (196)
127 PRK14966 unknown domain/N5-glu 96.3 0.023 4.9E-07 56.5 9.5 77 9-85 277-382 (423)
128 KOG2352 Predicted spermine/spe 96.1 0.0073 1.6E-07 60.5 4.7 75 10-84 74-161 (482)
129 PRK11805 N5-glutamine S-adenos 96.0 0.024 5.1E-07 53.9 7.4 76 9-85 159-264 (307)
130 PRK13943 protein-L-isoaspartat 95.9 0.019 4.2E-07 55.1 6.8 68 10-84 108-180 (322)
131 PF00891 Methyltransf_2: O-met 95.9 0.012 2.5E-07 53.3 4.9 67 14-85 131-200 (241)
132 PHA03411 putative methyltransf 95.9 0.025 5.4E-07 53.3 7.1 80 8-88 89-189 (279)
133 PRK04457 spermidine synthase; 95.9 0.048 1E-06 50.6 8.9 76 8-84 91-177 (262)
134 PRK03612 spermidine synthase; 95.7 0.036 7.8E-07 56.4 7.9 75 9-84 323-415 (521)
135 PRK01581 speE spermidine synth 95.6 0.024 5.1E-07 55.5 6.0 75 9-84 176-268 (374)
136 COG2264 PrmA Ribosomal protein 95.6 0.017 3.8E-07 54.9 4.9 72 9-84 187-263 (300)
137 COG2521 Predicted archaeal met 95.6 0.025 5.5E-07 52.2 5.7 84 31-126 188-277 (287)
138 PF05891 Methyltransf_PK: AdoM 95.5 0.014 3E-07 53.1 3.9 108 13-127 84-202 (218)
139 TIGR00417 speE spermidine synt 95.4 0.074 1.6E-06 49.3 8.5 75 9-84 98-186 (270)
140 KOG1271 Methyltransferases [Ge 95.4 0.045 9.8E-07 48.9 6.3 75 10-84 94-181 (227)
141 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.3 0.016 3.5E-07 53.9 3.7 39 46-84 158-199 (256)
142 PRK13699 putative methylase; P 95.3 0.039 8.6E-07 50.2 6.0 44 41-84 15-72 (227)
143 COG2519 GCD14 tRNA(1-methylade 94.9 0.15 3.2E-06 47.4 8.7 87 13-123 125-217 (256)
144 PRK01544 bifunctional N5-gluta 94.8 0.12 2.6E-06 52.5 8.6 75 9-84 164-269 (506)
145 KOG3201 Uncharacterized conser 94.8 0.038 8.1E-07 48.5 4.1 78 41-135 98-176 (201)
146 PF03269 DUF268: Caenorhabditi 94.8 0.021 4.6E-07 49.8 2.5 42 44-85 61-112 (177)
147 PF01170 UPF0020: Putative RNA 94.8 0.11 2.3E-06 45.5 7.0 77 8-84 62-151 (179)
148 PF05724 TPMT: Thiopurine S-me 94.7 0.13 2.9E-06 46.5 7.8 75 8-82 60-153 (218)
149 COG1352 CheR Methylase of chem 94.6 0.051 1.1E-06 50.9 4.9 78 7-84 129-241 (268)
150 PF06325 PrmA: Ribosomal prote 94.5 0.036 7.8E-07 52.6 3.6 70 9-84 186-259 (295)
151 COG2813 RsmC 16S RNA G1207 met 94.1 0.12 2.6E-06 49.1 6.3 75 10-85 185-267 (300)
152 PLN02781 Probable caffeoyl-CoA 94.1 0.091 2E-06 47.9 5.2 72 9-84 95-178 (234)
153 PHA03412 putative methyltransf 93.9 0.18 3.9E-06 46.6 6.8 72 9-82 78-160 (241)
154 COG4123 Predicted O-methyltran 93.9 0.22 4.8E-06 46.2 7.4 79 8-86 69-172 (248)
155 PRK11933 yebU rRNA (cytosine-C 93.5 0.41 8.8E-06 48.3 9.1 76 9-85 140-243 (470)
156 PLN02366 spermidine synthase 93.1 0.22 4.7E-06 47.5 6.3 74 10-84 118-206 (308)
157 TIGR03704 PrmC_rel_meth putati 92.8 0.54 1.2E-05 43.3 8.3 77 9-85 112-217 (251)
158 COG4122 Predicted O-methyltran 92.8 0.17 3.8E-06 46.1 4.8 70 10-83 87-165 (219)
159 PRK11783 rlmL 23S rRNA m(2)G24 92.8 0.12 2.7E-06 54.4 4.4 77 9-85 563-657 (702)
160 COG0220 Predicted S-adenosylme 92.7 0.26 5.7E-06 45.1 5.9 66 18-84 87-164 (227)
161 PRK13168 rumA 23S rRNA m(5)U19 92.4 0.3 6.5E-06 48.6 6.4 77 9-90 321-406 (443)
162 PF01135 PCMT: Protein-L-isoas 91.9 0.2 4.4E-06 45.1 4.1 69 10-85 100-173 (209)
163 smart00650 rADc Ribosomal RNA 91.8 0.25 5.3E-06 42.3 4.3 71 9-83 37-112 (169)
164 PF02390 Methyltransf_4: Putat 91.5 0.23 4.9E-06 44.1 3.9 75 9-84 43-133 (195)
165 PRK11524 putative methyltransf 91.5 0.13 2.9E-06 48.0 2.6 55 31-85 10-81 (284)
166 PF08704 GCD14: tRNA methyltra 90.4 1.1 2.5E-05 41.4 7.6 88 13-123 71-168 (247)
167 PRK00536 speE spermidine synth 90.2 2.1 4.5E-05 40.1 9.2 67 9-84 96-171 (262)
168 PF06859 Bin3: Bicoid-interact 90.1 0.1 2.2E-06 42.6 0.4 40 46-85 1-45 (110)
169 KOG2798 Putative trehalase [Ca 89.8 0.49 1.1E-05 45.5 4.7 80 44-125 257-336 (369)
170 COG2242 CobL Precorrin-6B meth 89.8 2.7 5.9E-05 37.5 9.1 69 10-84 61-135 (187)
171 PF12147 Methyltransf_20: Puta 89.6 2.5 5.5E-05 40.3 9.3 113 9-125 163-297 (311)
172 KOG2899 Predicted methyltransf 89.6 1.1 2.5E-05 41.8 6.7 43 42-84 162-209 (288)
173 PLN02823 spermine synthase 89.1 0.78 1.7E-05 44.4 5.6 75 9-84 129-220 (336)
174 TIGR00478 tly hemolysin TlyA f 88.7 2.6 5.6E-05 38.6 8.5 105 9-123 100-214 (228)
175 KOG3178 Hydroxyindole-O-methyl 88.6 1.1 2.4E-05 43.4 6.2 45 37-85 231-276 (342)
176 PF03059 NAS: Nicotianamine sy 88.4 1.1 2.4E-05 42.2 6.1 76 8-83 147-229 (276)
177 PRK15128 23S rRNA m(5)C1962 me 88.1 0.56 1.2E-05 46.3 4.0 74 9-84 245-339 (396)
178 PLN02476 O-methyltransferase 87.2 0.7 1.5E-05 43.6 3.9 70 10-83 146-227 (278)
179 COG4798 Predicted methyltransf 86.2 0.72 1.6E-05 41.7 3.2 42 43-86 127-168 (238)
180 COG2518 Pcm Protein-L-isoaspar 85.8 2.2 4.8E-05 38.7 6.2 68 9-84 96-169 (209)
181 TIGR00479 rumA 23S rRNA (uraci 85.3 1.8 3.8E-05 42.8 5.8 75 9-87 316-399 (431)
182 PRK03522 rumB 23S rRNA methylu 85.2 1.9 4.1E-05 40.8 5.8 77 9-89 197-279 (315)
183 TIGR03439 methyl_EasF probable 84.5 2.1 4.5E-05 41.1 5.8 77 8-84 105-197 (319)
184 PF01555 N6_N4_Mtase: DNA meth 84.2 1.7 3.8E-05 37.6 4.7 24 63-86 35-58 (231)
185 KOG1661 Protein-L-isoaspartate 83.3 3.3 7.2E-05 37.9 6.2 67 11-84 112-193 (237)
186 PF06962 rRNA_methylase: Putat 82.2 4.2 9.1E-05 34.6 6.1 97 11-119 3-115 (140)
187 PRK01544 bifunctional N5-gluta 82.2 1.9 4E-05 43.9 4.6 73 12-85 376-463 (506)
188 COG1092 Predicted SAM-dependen 81.9 0.87 1.9E-05 45.0 2.1 77 9-85 242-337 (393)
189 PLN02589 caffeoyl-CoA O-methyl 81.8 1.9 4.2E-05 39.9 4.2 68 11-82 108-188 (247)
190 KOG3987 Uncharacterized conser 81.5 0.7 1.5E-05 42.3 1.2 67 13-84 140-207 (288)
191 PF10294 Methyltransf_16: Puta 81.4 1.7 3.7E-05 37.6 3.5 42 43-85 116-157 (173)
192 COG3963 Phospholipid N-methylt 78.8 3 6.4E-05 37.0 4.1 83 2-84 68-156 (194)
193 PF02527 GidB: rRNA small subu 77.8 7.4 0.00016 34.4 6.5 69 10-84 75-148 (184)
194 COG2890 HemK Methylase of poly 77.6 9.3 0.0002 35.8 7.5 75 8-84 135-238 (280)
195 PF01596 Methyltransf_3: O-met 76.5 1.8 3.8E-05 38.9 2.1 69 12-84 75-155 (205)
196 COG0144 Sun tRNA and rRNA cyto 75.1 17 0.00037 35.2 8.7 76 10-85 185-289 (355)
197 PRK04338 N(2),N(2)-dimethylgua 74.7 5.4 0.00012 39.2 5.2 72 9-85 83-159 (382)
198 PF14740 DUF4471: Domain of un 74.6 6.7 0.00014 37.3 5.6 67 44-123 220-286 (289)
199 PLN02668 indole-3-acetate carb 73.5 4.2 9.1E-05 40.2 4.1 20 41-61 157-176 (386)
200 KOG1663 O-methyltransferase [S 72.5 4.4 9.5E-05 37.4 3.7 38 42-83 145-182 (237)
201 PLN02672 methionine S-methyltr 72.0 7.6 0.00016 43.3 6.0 76 9-85 144-279 (1082)
202 PF01564 Spermine_synth: Sperm 71.5 4.2 9.2E-05 37.4 3.4 75 9-84 102-191 (246)
203 PF11899 DUF3419: Protein of u 71.2 5 0.00011 39.5 4.0 42 42-84 291-334 (380)
204 COG1064 AdhP Zn-dependent alco 71.0 7.2 0.00016 37.9 5.0 71 8-86 191-261 (339)
205 KOG1709 Guanidinoacetate methy 70.4 3.8 8.2E-05 37.8 2.7 70 14-84 131-206 (271)
206 PF03492 Methyltransf_7: SAM d 69.9 3.6 7.8E-05 39.6 2.7 23 38-61 99-121 (334)
207 COG0421 SpeE Spermidine syntha 69.3 11 0.00024 35.6 5.7 72 12-84 105-190 (282)
208 COG0116 Predicted N6-adenine-s 68.7 21 0.00045 35.3 7.7 76 10-86 257-346 (381)
209 TIGR02085 meth_trns_rumB 23S r 65.0 14 0.0003 36.0 5.7 77 9-89 257-339 (374)
210 PF10354 DUF2431: Domain of un 63.9 46 0.001 28.7 8.2 64 18-84 44-125 (166)
211 PRK11783 rlmL 23S rRNA m(2)G24 63.4 24 0.00052 37.4 7.5 76 9-84 258-347 (702)
212 PF10672 Methyltrans_SAM: S-ad 63.0 3.6 7.8E-05 39.0 1.2 77 9-85 148-239 (286)
213 PRK10909 rsmD 16S rRNA m(2)G96 57.2 29 0.00062 31.0 5.9 75 9-85 78-160 (199)
214 PF09243 Rsm22: Mitochondrial 57.1 24 0.00053 32.8 5.6 75 9-87 60-142 (274)
215 PF14881 Tubulin_3: Tubulin do 54.9 8.9 0.00019 33.8 2.2 61 209-271 45-117 (180)
216 PRK09880 L-idonate 5-dehydroge 53.6 32 0.0007 32.3 5.9 68 11-85 198-267 (343)
217 PF00107 ADH_zinc_N: Zinc-bind 52.5 26 0.00055 27.7 4.4 68 10-84 17-89 (130)
218 KOG2539 Mitochondrial/chloropl 49.3 41 0.00089 34.2 6.0 76 12-87 231-318 (491)
219 cd08254 hydroxyacyl_CoA_DH 6-h 48.4 43 0.00093 30.6 5.8 35 43-84 229-263 (338)
220 PF05185 PRMT5: PRMT5 arginine 47.3 29 0.00062 35.0 4.7 70 10-81 217-294 (448)
221 TIGR00308 TRM1 tRNA(guanine-26 46.5 35 0.00076 33.5 5.1 71 9-84 71-147 (374)
222 cd08283 FDH_like_1 Glutathione 45.7 61 0.0013 31.1 6.6 74 10-85 212-307 (386)
223 KOG2904 Predicted methyltransf 45.4 57 0.0012 31.3 6.0 77 9-85 174-286 (328)
224 COG1063 Tdh Threonine dehydrog 43.4 46 0.00099 31.9 5.3 65 13-84 199-269 (350)
225 PRK14896 ksgA 16S ribosomal RN 43.1 33 0.00071 31.4 4.1 46 9-56 53-101 (258)
226 PRK09424 pntA NAD(P) transhydr 42.7 78 0.0017 32.5 7.0 74 10-84 191-285 (509)
227 PF01269 Fibrillarin: Fibrilla 41.2 43 0.00094 30.8 4.4 64 17-85 112-179 (229)
228 COG0863 DNA modification methy 39.6 69 0.0015 29.2 5.7 51 64-136 79-129 (302)
229 PF04672 Methyltransf_19: S-ad 38.8 46 0.001 31.3 4.4 36 49-84 153-190 (267)
230 PF14258 DUF4350: Domain of un 38.7 94 0.002 22.3 5.2 62 17-83 8-69 (70)
231 TIGR00755 ksgA dimethyladenosi 37.9 76 0.0016 28.8 5.6 45 10-56 54-104 (253)
232 TIGR02987 met_A_Alw26 type II 37.6 1.3E+02 0.0028 30.5 7.7 21 6-26 62-82 (524)
233 KOG1122 tRNA and rRNA cytosine 37.1 70 0.0015 32.3 5.5 77 10-87 269-374 (460)
234 PRK00274 ksgA 16S ribosomal RN 36.1 34 0.00073 31.7 3.0 46 9-54 66-113 (272)
235 PF02475 Met_10: Met-10+ like- 34.8 58 0.0013 29.1 4.2 64 12-81 130-199 (200)
236 TIGR02822 adh_fam_2 zinc-bindi 34.6 1.1E+02 0.0024 28.6 6.3 61 13-85 195-255 (329)
237 PF10113 Fibrillarin_2: Fibril 34.2 46 0.001 33.5 3.7 74 10-83 202-286 (505)
238 PF02475 Met_10: Met-10+ like- 33.7 25 0.00054 31.5 1.7 38 214-259 84-121 (200)
239 PF13578 Methyltransf_24: Meth 33.6 23 0.00049 27.3 1.2 51 30-82 51-103 (106)
240 COG5459 Predicted rRNA methyla 32.9 1.2E+02 0.0027 30.1 6.3 49 38-86 176-227 (484)
241 cd08230 glucose_DH Glucose deh 32.8 1.6E+02 0.0034 27.7 7.0 65 11-84 203-269 (355)
242 PRK06274 indolepyruvate oxidor 32.6 3.1E+02 0.0067 23.7 8.5 38 40-86 60-98 (197)
243 TIGR02175 PorC_KorC 2-oxoacid: 32.3 94 0.002 26.7 5.0 41 35-84 53-97 (177)
244 COG0809 QueA S-adenosylmethion 32.0 2.3E+02 0.005 27.7 7.9 81 5-85 177-257 (348)
245 cd01842 SGNH_hydrolase_like_5 31.9 81 0.0018 28.1 4.5 46 42-87 46-103 (183)
246 PF02384 N6_Mtase: N-6 DNA Met 31.8 41 0.00089 31.3 2.9 81 6-86 76-185 (311)
247 COG2520 Predicted methyltransf 31.7 91 0.002 30.4 5.3 70 10-84 214-289 (341)
248 COG4373 Mu-like prophage FluMu 31.1 42 0.00091 33.2 2.8 63 15-85 258-320 (509)
249 cd08234 threonine_DH_like L-th 30.8 1.7E+02 0.0036 26.8 6.8 34 44-84 224-257 (334)
250 COG1189 Predicted rRNA methyla 30.7 1.3E+02 0.0028 28.1 5.8 75 46-124 144-222 (245)
251 cd05565 PTS_IIB_lactose PTS_II 29.2 93 0.002 24.7 4.1 64 17-87 18-81 (99)
252 KOG1099 SAM-dependent methyltr 29.0 52 0.0011 30.8 2.9 42 42-83 111-162 (294)
253 KOG2198 tRNA cytosine-5-methyl 28.7 1E+02 0.0022 30.5 5.0 51 65-125 277-327 (375)
254 cd08245 CAD Cinnamyl alcohol d 28.2 1.6E+02 0.0034 27.0 6.1 34 45-85 224-257 (330)
255 PF01728 FtsJ: FtsJ-like methy 27.5 36 0.00078 29.0 1.6 39 45-84 90-139 (181)
256 COG0357 GidB Predicted S-adeno 27.4 96 0.0021 28.2 4.3 66 12-82 96-166 (215)
257 TIGR02825 B4_12hDH leukotriene 26.9 1.8E+02 0.004 26.7 6.3 32 45-84 206-237 (325)
258 COG4301 Uncharacterized conser 26.7 1.9E+02 0.004 27.6 6.1 76 8-84 107-193 (321)
259 TIGR03451 mycoS_dep_FDH mycoth 26.4 2.3E+02 0.005 26.6 7.0 68 10-85 204-277 (358)
260 COG1889 NOP1 Fibrillarin-like 26.0 1.7E+02 0.0037 26.9 5.6 73 5-84 103-180 (231)
261 PRK08537 2-oxoglutarate ferred 25.7 2.4E+02 0.0051 24.1 6.4 32 45-85 66-97 (177)
262 cd08232 idonate-5-DH L-idonate 24.8 2E+02 0.0044 26.4 6.2 32 46-84 231-262 (339)
263 cd08255 2-desacetyl-2-hydroxye 24.7 2.1E+02 0.0045 25.4 6.1 34 44-84 157-190 (277)
264 COG1908 FrhD Coenzyme F420-red 24.2 59 0.0013 27.2 2.1 32 212-243 67-100 (132)
265 PF01861 DUF43: Protein of unk 23.2 4.3E+02 0.0094 24.6 7.8 69 13-83 73-148 (243)
266 PF01558 POR: Pyruvate ferredo 22.7 1.4E+02 0.0031 25.2 4.4 38 39-85 49-87 (173)
267 KOG1499 Protein arginine N-met 22.3 1E+02 0.0022 30.2 3.7 62 21-83 100-166 (346)
268 KOG1547 Septin CDC10 and relat 21.9 29 0.00062 32.8 -0.1 67 213-279 116-199 (336)
269 KOG2530 Members of tubulin/Fts 21.7 1.1E+02 0.0024 31.0 3.9 62 208-272 175-249 (483)
270 TIGR03366 HpnZ_proposed putati 21.7 2E+02 0.0043 26.1 5.4 64 14-84 152-218 (280)
271 cd08281 liver_ADH_like1 Zinc-d 21.6 1.7E+02 0.0037 27.7 5.1 66 11-84 220-290 (371)
272 PF07927 YcfA: YcfA-like prote 21.3 1.5E+02 0.0033 20.2 3.5 30 107-136 1-30 (56)
273 TIGR00006 S-adenosyl-methyltra 21.2 83 0.0018 30.1 2.8 22 64-85 220-242 (305)
274 PRK10222 PTS system L-ascorbat 20.9 1.5E+02 0.0032 22.7 3.7 36 21-56 9-44 (85)
275 PRK10309 galactitol-1-phosphat 20.5 3.8E+02 0.0082 24.9 7.2 21 65-85 241-261 (347)
276 TIGR02143 trmA_only tRNA (urac 20.5 97 0.0021 29.9 3.2 72 9-88 221-315 (353)
277 cd08239 THR_DH_like L-threonin 20.5 3.9E+02 0.0084 24.6 7.2 66 13-85 194-263 (339)
278 PRK11727 23S rRNA mA1618 methy 20.5 4.7E+02 0.01 25.2 7.8 48 9-56 140-199 (321)
279 PRK08534 pyruvate ferredoxin o 20.4 2.3E+02 0.0051 24.3 5.3 35 41-84 61-97 (181)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=4.5e-91 Score=680.11 Aligned_cols=271 Identities=58% Similarity=1.077 Sum_probs=259.5
Q ss_pred CCCCceeeeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513 1 MDYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 1 ~~~~v~t~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~ 80 (294)
++|||+|||+||.|.++.++|+|.|||+++.+.+.++++||||+++||+|||++|+++|+.+.+.+|.|++|||||||||
T Consensus 136 ~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyf 215 (506)
T PF03141_consen 136 LERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYF 215 (506)
T ss_pred hhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceE
Confidence 57999999999999999999999999999999888999999999999999999999999999889999999999999999
Q ss_pred EEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeCCCCCchhhhhhhcCCCCCCCC-CCCCC
Q 041513 81 VVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCV-KSDPD 159 (294)
Q Consensus 81 vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~Kp~~~~~C~~~r~~~~~~~~C~-~~~~d 159 (294)
++|+||++ ++++++++++|++|++++++|||++++++++++|||||.+| +||.+|+..+.|++|+ ++|||
T Consensus 216 v~S~ppv~--------~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd 286 (506)
T PF03141_consen 216 VLSGPPVY--------QRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPD 286 (506)
T ss_pred EecCCccc--------ccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCc
Confidence 99999997 35677889999999999999999999999999999999997 9999999889999999 88999
Q ss_pred ccccccCccccccCCCCcccccccCCCCcCCcccccCCCCcccccccccccchhhhhhHHHHHHHHHHHHHhhh-cCCCC
Q 041513 160 AVWYTKMEPCVTPLPMVNEIKDVAGGALEKWPKRLNTAPPRIRSGFIEGITVKSFNEDNQLWKKRVSHYRIILE-SLFSG 238 (294)
Q Consensus 160 ~~wy~~~~~ci~~~~~~~~~~~~~~~~~~~wp~Rl~~~p~r~~~~~~~g~~~~~f~~D~~~W~~~v~~Y~~~~~-~~~~~ 238 (294)
++||++|++||||+|++++ +.+++++++||+||+++|+||++|++.|+++|+|++||++||++|++||+++. .|+++
T Consensus 287 ~aWY~~l~~Cit~~p~~~~--~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~ 364 (506)
T PF03141_consen 287 AAWYVPLEACITPLPEVSS--EIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWG 364 (506)
T ss_pred chhhcchhhhcCcCCcccc--cccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999998754 78899999999999999999999999999999999999999999999999887 79999
Q ss_pred CcceeeccccCcchhHhhhcCCCceEEEecCCCCCCCCccceEec
Q 041513 239 KFRNIMDMNAGLGGFAAALAKYPVWVMNAVPFDAKHNTLQTGILS 283 (294)
Q Consensus 239 ~~RNvmDMnA~~GGFAAAl~~~~vWVMNVvP~~~~~~tL~v~~~~ 283 (294)
+||||||||||||||||||+++|||||||||+.++ |||||||--
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~-ntL~vIydR 408 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGP-NTLPVIYDR 408 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEecccCCC-Ccchhhhhc
Confidence 99999999999999999999999999999999887 999999853
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=3.6e-14 Score=129.82 Aligned_cols=77 Identities=30% Similarity=0.321 Sum_probs=68.1
Q ss_pred eeeeccCCCcHHHHHHHHHcCCC-----cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 7 TMSFAPLDVHEAQVQFALERGLP-----AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 7 t~s~ap~D~S~~mlq~A~ergv~-----~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
+-.+.+.|+|++||+.|++|..+ +.+.+++++.|||+|++||+|.++++| +...+...+|+|+.|||||||+++
T Consensus 75 ~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl-rnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 75 TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL-RNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh-hcCCCHHHHHHHHHHhhcCCeEEE
Confidence 45678889999999999998543 677889999999999999999999999 555678899999999999999999
Q ss_pred EEc
Q 041513 82 VSG 84 (294)
Q Consensus 82 is~ 84 (294)
+.+
T Consensus 154 vle 156 (238)
T COG2226 154 VLE 156 (238)
T ss_pred EEE
Confidence 876
No 3
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.39 E-value=2.9e-13 Score=103.01 Aligned_cols=74 Identities=31% Similarity=0.390 Sum_probs=61.8
Q ss_pred eeeccCCCcHHHHHHHHHcCC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 8 MSFAPLDVHEAQVQFALERGL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~ergv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.++...|+|++|++.|+++.. ...+...+.+.+||++++||+|++..+++|+ +++..+++|+.|+|||||+++|
T Consensus 20 ~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 20 ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHHHHHHHHHHHcCcCeEEeC
Confidence 467788999999999999753 3447778999999999999999999999555 7788999999999999999986
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.33 E-value=1.2e-12 Score=119.50 Aligned_cols=75 Identities=28% Similarity=0.364 Sum_probs=58.4
Q ss_pred eeccCCCcHHHHHHHHHcC----C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALERG----L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg----v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+.+.|+|++|++.|+++. . ++.+.++|++.|||++++||+|+|++++++ ..+...+|+|++|||||||+|++.
T Consensus 74 ~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn-~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 74 KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRN-FPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG--SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHh-hCCHHHHHHHHHHHcCCCeEEEEe
Confidence 5677899999999999762 2 677888999999999999999999999954 557779999999999999999997
Q ss_pred c
Q 041513 84 G 84 (294)
Q Consensus 84 ~ 84 (294)
+
T Consensus 153 e 153 (233)
T PF01209_consen 153 E 153 (233)
T ss_dssp E
T ss_pred e
Confidence 6
No 5
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.32 E-value=3.3e-12 Score=109.63 Aligned_cols=72 Identities=22% Similarity=0.158 Sum_probs=62.7
Q ss_pred cCCCcHHHHHHHHHcC--------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 12 PLDVHEAQVQFALERG--------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 12 p~D~S~~mlq~A~erg--------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
+.|+|++||+.|+++. ..+.+.+++++.+|+++++||+|++++++ |+..++..+|+|++|+|||||+|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l-~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGL-RNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchh-hcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 5799999999997642 13677888999999999999999999999 55567889999999999999999987
Q ss_pred c
Q 041513 84 G 84 (294)
Q Consensus 84 ~ 84 (294)
.
T Consensus 81 d 81 (160)
T PLN02232 81 D 81 (160)
T ss_pred E
Confidence 5
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=2.7e-11 Score=111.95 Aligned_cols=75 Identities=21% Similarity=0.139 Sum_probs=65.0
Q ss_pred eeccCCCcHHHHHHHHHcC--------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513 9 SFAPLDVHEAQVQFALERG--------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg--------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~ 80 (294)
.+.+.|+|++|++.|+++. ..+.+.+++++.+||++++||+|+++++++ +.+++..+++|+.|+|||||+|
T Consensus 100 ~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l 178 (261)
T PLN02233 100 KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLR-NVVDRLKAMQEMYRVLKPGSRV 178 (261)
T ss_pred EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccc-cCCCHHHHHHHHHHHcCcCcEE
Confidence 5678899999999998652 145677789999999999999999999994 5567889999999999999999
Q ss_pred EEEc
Q 041513 81 VVSG 84 (294)
Q Consensus 81 vis~ 84 (294)
++..
T Consensus 179 ~i~d 182 (261)
T PLN02233 179 SILD 182 (261)
T ss_pred EEEE
Confidence 9986
No 7
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=2.2e-11 Score=108.83 Aligned_cols=112 Identities=23% Similarity=0.320 Sum_probs=84.0
Q ss_pred eeccCCCcHHHHHHHHHcC-----CCcE-EEEccCCCCC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 9 SFAPLDVHEAQVQFALERG-----LPAM-VGLLSTYQLP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg-----v~~~-~~v~d~~~LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
++.-+|.++.|-++|.++. .... +.+++.++|| ++++|+|+|+|.+||| -+.++.+.|.|+.|+|||||+++
T Consensus 101 svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC-Sve~~~k~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 101 SVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC-SVEDPVKQLNEVRRLLRPGGRII 179 (252)
T ss_pred eEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe-ccCCHHHHHHHHHHhcCCCcEEE
Confidence 5667799999999986542 3344 6778899999 9999999999999995 46788899999999999999999
Q ss_pred EEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeCCCCCchhhhhhhcCCC
Q 041513 82 VSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKS 149 (294)
Q Consensus 82 is~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~Kp~~~~~C~~~r~~~~~ 149 (294)
+.+|... .+.-|. +-+|..++ +.|+--.+ ||+.+|++.+.
T Consensus 180 fiEHva~---~y~~~n------~i~q~v~e-----------------p~~~~~~d--GC~ltrd~~e~ 219 (252)
T KOG4300|consen 180 FIEHVAG---EYGFWN------RILQQVAE-----------------PLWHLESD--GCVLTRDTGEL 219 (252)
T ss_pred EEecccc---cchHHH------HHHHHHhc-----------------hhhheecc--ceEEehhHHHH
Confidence 9998421 111121 11222232 67876665 99999987654
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.06 E-value=2.9e-10 Score=104.53 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=62.8
Q ss_pred eccCCCcHHHHHHHHHcC----CC----cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 10 FAPLDVHEAQVQFALERG----LP----AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~erg----v~----~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
+.-.|++++||..+++|. +. ..+..+|++.|||+|++||+.+.++.+.+|. +++++|+|.+|||||||+|.
T Consensus 133 V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 133 VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEE
Confidence 334599999999998764 21 4566679999999999999999999997776 56699999999999999999
Q ss_pred EEc
Q 041513 82 VSG 84 (294)
Q Consensus 82 is~ 84 (294)
+..
T Consensus 212 cLe 214 (296)
T KOG1540|consen 212 CLE 214 (296)
T ss_pred EEE
Confidence 876
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.00 E-value=7.2e-10 Score=100.87 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=67.6
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
.+...|+|++|++.|+++.....+.++|.+.+|+++++||+|+++.++ ||..++..++.|+.|+|||||+|+++..
T Consensus 66 ~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 66 QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 466779999999999988654556778899999999999999999999 8888898999999999999999999874
No 10
>PRK05785 hypothetical protein; Provisional
Probab=98.87 E-value=5.2e-09 Score=94.84 Aligned_cols=67 Identities=25% Similarity=0.198 Sum_probs=57.7
Q ss_pred eeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCc
Q 041513 8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG 78 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG 78 (294)
..+.+.|+|++|++.|+++. .+.+++++.+||++++||+|+|++++ |+.+++..+++|+.|||||.+
T Consensus 75 ~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l-~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 75 YYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFAL-HASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChh-hccCCHHHHHHHHHHHhcCce
Confidence 36788999999999998864 24567899999999999999999999 556678899999999999954
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.86 E-value=4e-09 Score=96.50 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=63.0
Q ss_pred eeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
..+.+.|+|+.|++.|+++++ .+.++|.+.++ ++++||+|+|+.++ ||..++..+++++.|+|||||+|++..+
T Consensus 54 ~~v~gvD~s~~~~~~a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 54 AVIEALDSSPEMVAAARERGV--DARTGDVRDWK-PKPDTDVVVSNAAL-QWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CEEEEEECCHHHHHHHHhcCC--cEEEcChhhCC-CCCCceEEEEehhh-hhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 357788999999999998764 45567777774 67899999999999 6677888999999999999999999864
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=98.86 E-value=5.9e-09 Score=99.88 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=65.3
Q ss_pred eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
..+.+.|+|+.|++.|+++ ++ .+.+.++|+..+||++++||+|+|..+++|+ .+...+++|+.|+|||||+|+
T Consensus 142 ~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~-~d~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 142 ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHM-PDKRKFVQELARVAAPGGRII 220 (340)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhcc-CCHHHHHHHHHHHcCCCcEEE
Confidence 3567789999999998764 33 4677888999999999999999999999665 466699999999999999999
Q ss_pred EEc
Q 041513 82 VSG 84 (294)
Q Consensus 82 is~ 84 (294)
++.
T Consensus 221 i~~ 223 (340)
T PLN02244 221 IVT 223 (340)
T ss_pred EEE
Confidence 976
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.80 E-value=8.4e-09 Score=95.42 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=65.7
Q ss_pred eeccCCCcHHHHHHHHHcCC---CcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEEEEEc
Q 041513 9 SFAPLDVHEAQVQFALERGL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+...|+|+.|++.|+++.. .+.+...+...+||++++||+|++..+++|+. .+...+++++.|+|||||+|+++.
T Consensus 77 ~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 77 HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 57788999999999998642 36666778888999999999999998887775 366789999999999999999987
Q ss_pred C
Q 041513 85 P 85 (294)
Q Consensus 85 p 85 (294)
.
T Consensus 157 ~ 157 (263)
T PTZ00098 157 Y 157 (263)
T ss_pred e
Confidence 4
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.78 E-value=6.4e-09 Score=99.27 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=65.0
Q ss_pred eeccCCCcHHHHHHHHHcC----C--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALERG----L--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg----v--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+.++|+|++|++.|+++. . .+.+.+.+++.+|+++++||+|+|..+++|+ .++..+++++.|+|||||.|++
T Consensus 155 ~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv-~d~~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 155 TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV-ANPAEFCKSLSALTIPNGATVL 233 (322)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc-CCHHHHHHHHHHHcCCCcEEEE
Confidence 5778899999999998652 1 4567777888999999999999999999665 5677999999999999999999
Q ss_pred EcC
Q 041513 83 SGP 85 (294)
Q Consensus 83 s~p 85 (294)
+..
T Consensus 234 st~ 236 (322)
T PLN02396 234 STI 236 (322)
T ss_pred EEC
Confidence 874
No 15
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.74 E-value=2.7e-08 Score=90.72 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=63.8
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
.+.+.|+|+.|++.|+++...+.+...|...++ ++++||+|+|+.++ ||..+...+++++.|+|||||+|++..+
T Consensus 57 ~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l-~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 57 RITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASL-QWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccCh-hhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 567789999999999987655677777776664 56799999999999 7777888999999999999999999864
No 16
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.73 E-value=2.8e-08 Score=91.58 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=64.2
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+...|++++|++.|+++ ++ .+.+...+.+.+|+++++||+|++..++ |+..+...+++|+.|+|||||+|+++
T Consensus 104 ~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~-~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 104 KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI-NLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc-cCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 467789999999999875 33 4556677888999999999999999888 55666778999999999999999998
Q ss_pred cC
Q 041513 84 GP 85 (294)
Q Consensus 84 ~p 85 (294)
..
T Consensus 183 ~~ 184 (272)
T PRK11873 183 DV 184 (272)
T ss_pred Ee
Confidence 63
No 17
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.73 E-value=2.2e-08 Score=92.76 Aligned_cols=70 Identities=23% Similarity=0.365 Sum_probs=60.6
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
.+.+.|+|++|++.|+++...+.+.+++...+||++++||+|++.++- ..++|+.|+|||||+|++..+.
T Consensus 114 ~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 114 QLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred eEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC--------CCHHHHHhhccCCCEEEEEeCC
Confidence 578899999999999988767788888999999999999999986542 3578999999999999998763
No 18
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.71 E-value=3.3e-08 Score=95.09 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=80.7
Q ss_pred eeccCCCcHHHHHHHHHcC--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC-
Q 041513 9 SFAPLDVHEAQVQFALERG--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP- 85 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p- 85 (294)
.+...|.|++|++.|+++. ..+.+..++.+.+||++++||+|+++.+++|+ .++..+|+|+.|+|||||++++..+
T Consensus 139 ~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~-~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 139 NVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW-PDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred EEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-CCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 4567899999999998863 24556678889999999999999999999554 5667899999999999999988763
Q ss_pred -CCCccccCC--CcccChHHHHHHHHHHHHHHHhhceEeeecccceeEe
Q 041513 86 -PISWKTSYR--GWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVW 131 (294)
Q Consensus 86 -p~~~~~~~~--~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw 131 (294)
+..|..++. .|... ...+++.++++..+++.+....-.+.|
T Consensus 218 ~p~~~~~r~~~~~~~~~-----~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 218 HPTFWLSRFFADVWMLF-----PKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred CcchhHHHHhhhhhccC-----CCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 222221100 01100 012456667777788776544333333
No 19
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.68 E-value=3e-08 Score=91.92 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=63.5
Q ss_pred eeeeccCCCcHHHHHHHHHcC--------C------------------------CcEEEEccCCCCCCCCCcccEEEecC
Q 041513 7 TMSFAPLDVHEAQVQFALERG--------L------------------------PAMVGLLSTYQLPYPSRSFDVAHCSR 54 (294)
Q Consensus 7 t~s~ap~D~S~~mlq~A~erg--------v------------------------~~~~~v~d~~~LPfpd~sFD~V~~s~ 54 (294)
...|.+.|+|+.||+.|++.- + .+.+.+.+....+++++.||+|+|..
T Consensus 132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn 211 (264)
T smart00138 132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRN 211 (264)
T ss_pred CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEech
Confidence 457889999999999998742 1 24566778888888899999999999
Q ss_pred cCccccc-ChHHHHHHHHhccCCCcEEEEEc
Q 041513 55 CLVPWTS-YDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 55 ~l~h~~~-d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+++|+.+ +...+++++.|+|||||+|++..
T Consensus 212 vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 212 VLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 9976642 23469999999999999999964
No 20
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.66 E-value=5.4e-08 Score=86.27 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=65.6
Q ss_pred eeccCCCcHHHHHHHHHcCC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 9 SFAPLDVHEAQVQFALERGL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
.+...|+++++++.++++.. .+.+...+...+|+++++||+|++..++ |+..++..++.++.|+|||||.++++.+
T Consensus 60 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l-~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 60 EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL-QWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-hhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 35778999999999988653 3566678888999999999999999999 6677788999999999999999999875
No 21
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.66 E-value=6.2e-08 Score=96.21 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=65.6
Q ss_pred eeeccCCCcHHHHHHHHHcC--C--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 8 MSFAPLDVHEAQVQFALERG--L--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~erg--v--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
..+.+.|+|++|++.|+++. . .+.+.++|...+++++++||+|+|..+++|+ .++..+++|+.|+|||||.|+++
T Consensus 290 ~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~-~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 290 VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHI-QDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccccc-CCHHHHHHHHHHHcCCCeEEEEE
Confidence 35778899999999998752 2 4567778888899999999999999999665 56779999999999999999998
Q ss_pred cC
Q 041513 84 GP 85 (294)
Q Consensus 84 ~p 85 (294)
..
T Consensus 369 ~~ 370 (475)
T PLN02336 369 DY 370 (475)
T ss_pred Ee
Confidence 74
No 22
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.64 E-value=1.1e-08 Score=80.31 Aligned_cols=72 Identities=25% Similarity=0.358 Sum_probs=58.9
Q ss_pred eeeeccCCCcHHHHHHHHHcC----CCcEEEEccCCCCCCCCCcccEEEecCc-CcccccC-hHHHHHHHHhccCCCc
Q 041513 7 TMSFAPLDVHEAQVQFALERG----LPAMVGLLSTYQLPYPSRSFDVAHCSRC-LVPWTSY-DGLYLMEIDRVLRPGG 78 (294)
Q Consensus 7 t~s~ap~D~S~~mlq~A~erg----v~~~~~v~d~~~LPfpd~sFD~V~~s~~-l~h~~~d-~~~~L~Ei~RVLKPGG 78 (294)
...+.+.|+|++||+.|+++. .++.+.++|...+++.+++||+|+|+.+ ++|+.++ ...+++++.++|||||
T Consensus 24 ~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 24 SSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 367788899999999998865 6889999999999999999999999766 7664432 3469999999999998
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.64 E-value=6.4e-08 Score=86.67 Aligned_cols=76 Identities=25% Similarity=0.277 Sum_probs=63.8
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+.+.|+|++|++.|+++ +. .+.+...+...+++++++||+|++..++ |+..+...+++|+.|+|||||++++.
T Consensus 72 ~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l-~~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 72 HVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL-RNVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc-ccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 567789999999999865 23 3566677888899999999999999999 55667779999999999999999987
Q ss_pred cC
Q 041513 84 GP 85 (294)
Q Consensus 84 ~p 85 (294)
.+
T Consensus 151 ~~ 152 (231)
T TIGR02752 151 ET 152 (231)
T ss_pred EC
Confidence 63
No 24
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.63 E-value=3.6e-08 Score=90.26 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=62.0
Q ss_pred eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCC-CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQL-PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~L-Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
.+...|+|++|++.|+++ ++ .+.+.+++.+.+ ++++++||+|+|..++ |+..++..++.++.|+|||||+++
T Consensus 68 ~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl-~~~~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 68 QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL-EWVADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH-HhhCCHHHHHHHHHHHcCCCeEEE
Confidence 566789999999999875 33 345666777666 4778999999999999 566678799999999999999999
Q ss_pred EEcC
Q 041513 82 VSGP 85 (294)
Q Consensus 82 is~p 85 (294)
+...
T Consensus 147 i~~~ 150 (255)
T PRK11036 147 LMFY 150 (255)
T ss_pred EEEE
Confidence 8753
No 25
>PRK08317 hypothetical protein; Provisional
Probab=98.61 E-value=1.2e-07 Score=83.88 Aligned_cols=76 Identities=36% Similarity=0.419 Sum_probs=64.5
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+...|+|+.+++.|+++ +..+.+...+.+.+|+++++||+|++..+++| ..++..+++++.++|||||++++..
T Consensus 46 ~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 46 RVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQH-LEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhc-cCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 567789999999999886 23456667788888999999999999999955 5577799999999999999999987
Q ss_pred C
Q 041513 85 P 85 (294)
Q Consensus 85 p 85 (294)
+
T Consensus 125 ~ 125 (241)
T PRK08317 125 T 125 (241)
T ss_pred c
Confidence 5
No 26
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.54 E-value=4e-08 Score=81.85 Aligned_cols=72 Identities=26% Similarity=0.524 Sum_probs=57.2
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
.+.+.|+|+.|++. ........+....++++++||+|+|..+++| ..++..+|+++.|+|||||+++++.+.
T Consensus 46 ~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 46 EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEH-LPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGG-SSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhh-cccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 56778999999887 2233333344566778999999999999955 557889999999999999999999863
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.53 E-value=1.4e-07 Score=79.53 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=64.3
Q ss_pred eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCC--CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
.+.+.|+|++|++.|+++ +++ +.+.+.+...++ ++ +.||+|++..++ |+..++..+++++.|+||+||.++
T Consensus 30 ~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l-~~~~~~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 30 KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVL-HHFPDPEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTG-GGTSHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCch-hhccCHHHHHHHHHHHcCCCcEEE
Confidence 367789999999999873 554 778888888888 77 899999999999 666677789999999999999999
Q ss_pred EEcC
Q 041513 82 VSGP 85 (294)
Q Consensus 82 is~p 85 (294)
++..
T Consensus 108 ~~~~ 111 (152)
T PF13847_consen 108 ISDP 111 (152)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9875
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.51 E-value=1.9e-07 Score=84.56 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=61.0
Q ss_pred eeeccCCCcHHHHHHHHHc----C--CCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEE
Q 041513 8 MSFAPLDVHEAQVQFALER----G--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----g--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~ 80 (294)
..+.+.|+|++|++.|+++ + ..+.+.+++...++++ .+|+|+|+++++|+.+ +...+++++.|+|||||.|
T Consensus 80 ~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l 157 (239)
T TIGR00740 80 VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL 157 (239)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence 3577889999999999875 1 2456777888888876 4899999999955432 3457999999999999999
Q ss_pred EEEcC
Q 041513 81 VVSGP 85 (294)
Q Consensus 81 vis~p 85 (294)
+++.+
T Consensus 158 ~i~d~ 162 (239)
T TIGR00740 158 VLSEK 162 (239)
T ss_pred EEeec
Confidence 99975
No 29
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.45 E-value=1.4e-07 Score=86.36 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=65.7
Q ss_pred eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
-++.+.|+|+.+|+.|+.+ ++.+.+....++.|-...++||+|+|..+++|. +++..+++++.+.+||||.+++|
T Consensus 82 a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv-~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 82 ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV-PDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc-CCHHHHHHHHHHHcCCCcEEEEe
Confidence 4677889999999999854 455556666778887777999999999999775 57779999999999999999999
Q ss_pred cCC
Q 041513 84 GPP 86 (294)
Q Consensus 84 ~pp 86 (294)
...
T Consensus 161 Tin 163 (243)
T COG2227 161 TIN 163 (243)
T ss_pred ccc
Confidence 864
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.44 E-value=3e-07 Score=84.07 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=60.3
Q ss_pred eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEE
Q 041513 8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~ 80 (294)
..+.+.|+|+.|++.|+++ +. .+.+.+++...+|++ .+|+|+++.+++|..++ ...+++++.|+|||||.|
T Consensus 83 ~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l 160 (247)
T PRK15451 83 CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL 160 (247)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEE
Confidence 3577889999999999876 22 466777788888875 49999999999554322 246999999999999999
Q ss_pred EEEcC
Q 041513 81 VVSGP 85 (294)
Q Consensus 81 vis~p 85 (294)
+++..
T Consensus 161 ~l~e~ 165 (247)
T PRK15451 161 VLSEK 165 (247)
T ss_pred EEEEe
Confidence 99874
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.44 E-value=4.6e-07 Score=80.23 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=56.8
Q ss_pred eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+.+.|+|+.|++.|+++ ++. +.+.+.+...++++ ++||+|+|+.+++|... +...+++++.|+|||||++++
T Consensus 54 ~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 54 DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 567779999999998763 343 55666777777775 57999999999944332 345799999999999999665
Q ss_pred E
Q 041513 83 S 83 (294)
Q Consensus 83 s 83 (294)
.
T Consensus 133 ~ 133 (197)
T PRK11207 133 V 133 (197)
T ss_pred E
Confidence 4
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.42 E-value=5.9e-07 Score=85.70 Aligned_cols=74 Identities=20% Similarity=0.138 Sum_probs=60.3
Q ss_pred eeccCCCcHHHHHHHHH--c----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALE--R----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~e--r----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+.+.|+|+.|+..++. + ..++.+..++.+.+|+ +++||+|+|..+++| ..++..+|+++.|+|||||.|++
T Consensus 147 ~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H-~~dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 147 LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH-RRSPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc-cCCHHHHHHHHHHhcCCCcEEEE
Confidence 37788999999876432 2 2246677788899999 889999999999965 46777999999999999999998
Q ss_pred Ec
Q 041513 83 SG 84 (294)
Q Consensus 83 s~ 84 (294)
..
T Consensus 225 ~~ 226 (322)
T PRK15068 225 ET 226 (322)
T ss_pred EE
Confidence 64
No 33
>PRK06922 hypothetical protein; Provisional
Probab=98.42 E-value=3.1e-07 Score=94.55 Aligned_cols=78 Identities=19% Similarity=0.153 Sum_probs=63.5
Q ss_pred eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCC--CCCCcccEEEecCcCcccc------------cChHHHHHH
Q 041513 8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWT------------SYDGLYLME 69 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~------------~d~~~~L~E 69 (294)
..+.+.|+|+.|++.|+++ +.+..+.++|...+| |++++||+|+++.+++|+. .+...+|++
T Consensus 443 ~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLre 522 (677)
T PRK06922 443 KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQS 522 (677)
T ss_pred CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHH
Confidence 4677889999999999875 234556667877888 8999999999999996552 234579999
Q ss_pred HHhccCCCcEEEEEcC
Q 041513 70 IDRVLRPGGYWVVSGP 85 (294)
Q Consensus 70 i~RVLKPGG~~vis~p 85 (294)
+.|+|||||++++...
T Consensus 523 I~RVLKPGGrLII~D~ 538 (677)
T PRK06922 523 AYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHHcCCCcEEEEEeC
Confidence 9999999999999864
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.41 E-value=5.2e-07 Score=79.71 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=57.2
Q ss_pred eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEE
Q 041513 8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vi 82 (294)
..+.+.|+|+.|++.|+++ ++++...+.+....+++ ++||+|+|+.+++|+.. +...+++++.|+|||||++++
T Consensus 53 ~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 53 YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3577789999999988653 55655556666666665 57999999999955532 335799999999999999666
Q ss_pred E
Q 041513 83 S 83 (294)
Q Consensus 83 s 83 (294)
.
T Consensus 132 ~ 132 (195)
T TIGR00477 132 V 132 (195)
T ss_pred E
Confidence 4
No 35
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.40 E-value=5.5e-07 Score=80.26 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=60.5
Q ss_pred eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+.+.|+|++|++.|+++ ++ .+.+...|....|++ ++||+|++..+++|. .+...+++++.|+|||||++++
T Consensus 25 ~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 25 QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI-KDKMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC-CCHHHHHHHHHHHcCCCCEEEE
Confidence 566789999999999875 33 346666777666775 489999999999665 5677999999999999999999
Q ss_pred EcC
Q 041513 83 SGP 85 (294)
Q Consensus 83 s~p 85 (294)
...
T Consensus 103 ~~~ 105 (224)
T smart00828 103 ADF 105 (224)
T ss_pred EEc
Confidence 874
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.39 E-value=9.5e-08 Score=74.45 Aligned_cols=73 Identities=25% Similarity=0.260 Sum_probs=42.8
Q ss_pred eeeeccCCCcHHHHHHHHHcC----C-CcEEEEccCCCC-C-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513 7 TMSFAPLDVHEAQVQFALERG----L-PAMVGLLSTYQL-P-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY 79 (294)
Q Consensus 7 t~s~ap~D~S~~mlq~A~erg----v-~~~~~v~d~~~L-P-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~ 79 (294)
...+...|+|+.|++.|+++- . ............ . ...++||+|+++.+++|+ ++...+++.+.++|||||.
T Consensus 20 ~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 20 DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---S-HHHHHHHHTTT-TSS-E
T ss_pred CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-hhHHHHHHHHHHHcCCCCC
Confidence 346678899999998777652 1 222222222222 1 223699999999999555 7888999999999999998
Q ss_pred E
Q 041513 80 W 80 (294)
Q Consensus 80 ~ 80 (294)
|
T Consensus 99 l 99 (99)
T PF08242_consen 99 L 99 (99)
T ss_dssp E
T ss_pred C
Confidence 6
No 37
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.39 E-value=2.6e-07 Score=84.55 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=52.4
Q ss_pred eccCCCcHHHHHHHHHcCCCcEEE-----EccCCCCCCC--CCcccEEEecCcCcccccChHHHHHHHHhccCCCc-EEE
Q 041513 10 FAPLDVHEAQVQFALERGLPAMVG-----LLSTYQLPYP--SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG-YWV 81 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~ergv~~~~~-----v~d~~~LPfp--d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG-~~v 81 (294)
|.+.|+|++||++|++.- +.... ..+.+-.++- ++|+|+|+|..|+ ||.+.. .+++++.|||||.| .++
T Consensus 58 VIatD~s~~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-HWFdle-~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 58 VIATDVSEAMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-HWFDLE-RFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred heeecCCHHHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhhhH-HhhchH-HHHHHHHHHcCCCCCEEE
Confidence 456799999999998753 22221 1233334554 9999999999999 998666 99999999999877 544
Q ss_pred E
Q 041513 82 V 82 (294)
Q Consensus 82 i 82 (294)
+
T Consensus 135 v 135 (261)
T KOG3010|consen 135 V 135 (261)
T ss_pred E
Confidence 4
No 38
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.37 E-value=8.7e-07 Score=84.43 Aligned_cols=74 Identities=18% Similarity=0.042 Sum_probs=58.1
Q ss_pred eeccCCCcHHHHHHHHH--c--C--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALE--R--G--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~e--r--g--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+.+.|.|+.|+..++. + + ..+.+...+.+.+|+. ++||+|+|..+++|+ .++..+|+|++|+|||||.|++
T Consensus 146 ~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 146 SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEE
Confidence 46788999999876532 1 1 2345556778888875 489999999999665 5777999999999999999998
Q ss_pred Ec
Q 041513 83 SG 84 (294)
Q Consensus 83 s~ 84 (294)
..
T Consensus 224 et 225 (314)
T TIGR00452 224 ET 225 (314)
T ss_pred EE
Confidence 75
No 39
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.35 E-value=5.8e-07 Score=70.95 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=57.1
Q ss_pred eeccCCCcHHHHHHHHHcC------CCcEEEEccC-CCCCCCCCcccEEEecC-cCcccc--cChHHHHHHHHhccCCCc
Q 041513 9 SFAPLDVHEAQVQFALERG------LPAMVGLLST-YQLPYPSRSFDVAHCSR-CLVPWT--SYDGLYLMEIDRVLRPGG 78 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg------v~~~~~v~d~-~~LPfpd~sFD~V~~s~-~l~h~~--~d~~~~L~Ei~RVLKPGG 78 (294)
.+.+.|+|++|++.|+++. ..+.+.+.+. ....+ ...||+|++.. ++.++. ++...+++++.+.|+|||
T Consensus 27 ~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG 105 (112)
T PF12847_consen 27 RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGG 105 (112)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCc
Confidence 4667799999999998763 3567777777 33444 34599999999 553333 345579999999999999
Q ss_pred EEEEEcC
Q 041513 79 YWVVSGP 85 (294)
Q Consensus 79 ~~vis~p 85 (294)
+|++..|
T Consensus 106 ~lvi~~~ 112 (112)
T PF12847_consen 106 RLVINTC 112 (112)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9999764
No 40
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.35 E-value=8.9e-07 Score=79.14 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=59.9
Q ss_pred eeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEc
Q 041513 8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
..+.+.|+|++|++.|+++...+.+.++++.. |+++++||+|+|..+++|+.++ ...+++|+.|++ ++++++++
T Consensus 68 ~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 68 KHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 46788899999999999865445566677666 8999999999999999887532 357999999998 57888866
No 41
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.26 E-value=2.5e-06 Score=74.96 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=62.9
Q ss_pred eeccCCCcHHHHHHHHHcCC---CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 9 SFAPLDVHEAQVQFALERGL---PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv---~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+...|+++.+++.++++.. .+.+...+...++++++.||+|+++.++ |...++..+++++.++|+|||++++..
T Consensus 66 ~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 66 KVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL-RNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee-CCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 46677999999999988642 4566677888888988999999999999 455677799999999999999999876
No 42
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.26 E-value=3.3e-06 Score=75.02 Aligned_cols=76 Identities=26% Similarity=0.240 Sum_probs=63.0
Q ss_pred eeccCCCcHHHHHHHHHcC------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALERG------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+...|+++.+++.|+++. .++.+...+...+++++++||+|+++.+++ ...++...+.++.++|+|||++++
T Consensus 78 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~-~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 78 EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR-NVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred eEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc-cCCCHHHHHHHHHHhccCCcEEEE
Confidence 4667799999999998862 245666778888888889999999999994 455677899999999999999998
Q ss_pred EcC
Q 041513 83 SGP 85 (294)
Q Consensus 83 s~p 85 (294)
...
T Consensus 157 ~~~ 159 (239)
T PRK00216 157 LEF 159 (239)
T ss_pred EEe
Confidence 763
No 43
>PRK06202 hypothetical protein; Provisional
Probab=98.22 E-value=3.1e-06 Score=76.27 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=57.9
Q ss_pred eeeccCCCcHHHHHHHHHcC--CCcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEc
Q 041513 8 MSFAPLDVHEAQVQFALERG--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
..+.+.|+|++|++.|+++. ..+.+.+.+...+++++++||+|+|+.+++|+.++ ...+++|+.|++| |.+++..
T Consensus 89 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 89 LEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 46888999999999998863 23455556677788888999999999999666433 2369999999998 5555543
No 44
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.21 E-value=2.6e-06 Score=79.60 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=58.2
Q ss_pred eeeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEE
Q 041513 8 MSFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vi 82 (294)
..+.+.|+|+.|++.|+++ ++++.+.+.|....++ +++||+|++..+++|... +...+++++.|+|||||++++
T Consensus 143 ~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 143 FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3567789999999988654 5566666667666655 788999999999955432 344799999999999999776
Q ss_pred Ec
Q 041513 83 SG 84 (294)
Q Consensus 83 s~ 84 (294)
..
T Consensus 222 v~ 223 (287)
T PRK12335 222 VC 223 (287)
T ss_pred EE
Confidence 43
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.21 E-value=2.2e-06 Score=85.23 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=61.1
Q ss_pred eeccCCCcHHHHHHHHHcC---CCcEEEEccCC--CCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTY--QLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~--~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+.+.|+|++|++.++++. ..+.+.+.+.. .+|+++++||+|+|..+++|+.++ ...+++++.|+|||||++++
T Consensus 61 ~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 61 QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4567799999999987642 23556666653 678999999999999999665443 35799999999999999999
Q ss_pred EcC
Q 041513 83 SGP 85 (294)
Q Consensus 83 s~p 85 (294)
...
T Consensus 141 ~d~ 143 (475)
T PLN02336 141 RES 143 (475)
T ss_pred Eec
Confidence 764
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.18 E-value=4.4e-06 Score=74.31 Aligned_cols=76 Identities=28% Similarity=0.349 Sum_probs=60.6
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccC-CCCC--CCCCcccEEEecCcCcccccC--------hHHHHHHHHh
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLST-YQLP--YPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDR 72 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~-~~LP--fpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~R 72 (294)
.+.+.|+|+.|++.|+++ +. ++.+.++++ +.++ +++++||+|++.++. +|... ...+++++.|
T Consensus 66 ~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~-p~~~~~~~~~~~~~~~~l~~i~~ 144 (202)
T PRK00121 66 NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD-PWPKKRHHKRRLVQPEFLALYAR 144 (202)
T ss_pred cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC-CCCCccccccccCCHHHHHHHHH
Confidence 577889999999999864 33 456777787 7777 889999999998776 45321 2479999999
Q ss_pred ccCCCcEEEEEcC
Q 041513 73 VLRPGGYWVVSGP 85 (294)
Q Consensus 73 VLKPGG~~vis~p 85 (294)
+|||||+|+++.+
T Consensus 145 ~LkpgG~l~i~~~ 157 (202)
T PRK00121 145 KLKPGGEIHFATD 157 (202)
T ss_pred HcCCCCEEEEEcC
Confidence 9999999999875
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.17 E-value=1.2e-05 Score=71.27 Aligned_cols=92 Identities=17% Similarity=0.124 Sum_probs=69.9
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+...|.++.|++.|+++ ++ ++.+..++.+.++. +++||+|+|... .+...++.++.|+|||||+|++.
T Consensus 71 ~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-----~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 71 KVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-----ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred eEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc-----cCHHHHHHHHHHhcCCCeEEEEE
Confidence 567779999999998763 44 36677778877877 789999998642 24568999999999999999998
Q ss_pred cCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeec
Q 041513 84 GPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAE 124 (294)
Q Consensus 84 ~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~ 124 (294)
..+. ....++++++.++|....+
T Consensus 145 ~~~~------------------~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 145 KGRD------------------PEEEIAELPKALGGKVEEV 167 (187)
T ss_pred eCCC------------------hHHHHHHHHHhcCceEeee
Confidence 6532 1235777888888876554
No 48
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.11 E-value=1.3e-05 Score=72.68 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=109.6
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCC
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPIS 88 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~ 88 (294)
.|.++|.|.+||+.|+++..++.|..+|.... -|+..+|+++++.+| ||..+-..+|.-+.-.|.|||.+.+-.|...
T Consensus 56 ~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 56 VITGIDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred eEeeccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 46788999999999999999999988886665 367889999999999 9988887999999999999999999887321
Q ss_pred ccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeCCCCCchhhhhhhcCCCCCCCCCCCCCccccccCcc
Q 041513 89 WKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTNHLHCIQKLKALKSPTFCVKSDPDAVWYTKMEP 168 (294)
Q Consensus 89 ~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~Kp~~~~~C~~~r~~~~~~~~C~~~~~d~~wy~~~~~ 168 (294)
. +..-..|.+.++..-|......... -+++.....-|-+.-. +--|+ -+.|.+ .
T Consensus 134 -d-------------epsH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lLa---~~~~r----vDiW~T---~ 187 (257)
T COG4106 134 -D-------------EPSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELLA---PLACR----VDIWHT---T 187 (257)
T ss_pred -C-------------chhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHhC---cccce----eeeeee---e
Confidence 1 1223467778877777655443333 3666665566665521 22453 233532 1
Q ss_pred ccccCCCCcc-cccccCCCCcCCcccc
Q 041513 169 CVTPLPMVNE-IKDVAGGALEKWPKRL 194 (294)
Q Consensus 169 ci~~~~~~~~-~~~~~~~~~~~wp~Rl 194 (294)
-.|++|.... .+++.|..+.+|=+||
T Consensus 188 Y~h~l~~a~aIvdWvkgTgLrP~L~~L 214 (257)
T COG4106 188 YYHQLPGADAIVDWVKGTGLRPYLDRL 214 (257)
T ss_pred ccccCCCccchhhheeccccceecccc
Confidence 2355555443 3466666677666665
No 49
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.08 E-value=2e-06 Score=78.62 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=64.6
Q ss_pred cCCCcHHHHHHHHHc---CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 12 PLDVHEAQVQFALER---GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 12 p~D~S~~mlq~A~er---gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
-.|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++..+ ||.++....+..+.-.|||+|.|+-+.
T Consensus 100 ~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 100 MMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred eeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hhhccCchHHHHHHHhcCCCccchhHH
Confidence 359999999999875 355667788999999999999999999999 999998899999999999999999875
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.08 E-value=6.4e-06 Score=80.43 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=58.0
Q ss_pred eeccCCCcHHHHHHHHHcC--CCcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEEEEc
Q 041513 9 SFAPLDVHEAQVQFALERG--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+.+.|+|++|++.|+++. ..+.+...+...+ +++||.|++..+++|... +...+++++.|+|||||++++..
T Consensus 192 ~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 192 SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5777899999999999863 4455555665544 578999999999976532 34579999999999999999975
No 51
>PLN03075 nicotianamine synthase; Provisional
Probab=98.03 E-value=1.1e-05 Score=76.37 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=60.7
Q ss_pred eeccCCCcHHHHHHHHHc-----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEE
Q 041513 9 SFAPLDVHEAQVQFALER-----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er-----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~ 80 (294)
.|.+.|.++++++.|++. ++ .+.|..+|+..++-..+.||+|+|. ++++|. .++..+++.+.|.|+|||+|
T Consensus 151 ~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~L 229 (296)
T PLN03075 151 SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALL 229 (296)
T ss_pred EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEE
Confidence 577889999999999873 22 3677777766654335789999999 887774 67778999999999999999
Q ss_pred EEEc
Q 041513 81 VVSG 84 (294)
Q Consensus 81 vis~ 84 (294)
++-.
T Consensus 230 vlr~ 233 (296)
T PLN03075 230 MLRS 233 (296)
T ss_pred EEec
Confidence 9975
No 52
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.01 E-value=1.2e-05 Score=80.33 Aligned_cols=101 Identities=21% Similarity=0.385 Sum_probs=77.6
Q ss_pred CCCceeeeeccCCCcHHHHHHHHHcCCCcEEEEcc-CCCCCCCCCcccEEEecCcCcccccC--hHHHHHHHHhccCCCc
Q 041513 2 DYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLS-TYQLPYPSRSFDVAHCSRCLVPWTSY--DGLYLMEIDRVLRPGG 78 (294)
Q Consensus 2 ~~~v~t~s~ap~D~S~~mlq~A~ergv~~~~~v~d-~~~LPfpd~sFD~V~~s~~l~h~~~d--~~~~L~Ei~RVLKPGG 78 (294)
+++|-.|.+.|. .....+...-+||+--++ .| -+.++.-+++||+||+...|.++.+. ...+|.|++|+|||||
T Consensus 385 ~~~VWVMNVVP~-~~~ntL~vIydRGLIG~y--hDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G 461 (506)
T PF03141_consen 385 DDPVWVMNVVPV-SGPNTLPVIYDRGLIGVY--HDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGG 461 (506)
T ss_pred cCCceEEEeccc-CCCCcchhhhhcccchhc--cchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCc
Confidence 467788999999 556677777788853233 23 67888889999999999998776543 3469999999999999
Q ss_pred EEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513 79 YWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123 (294)
Q Consensus 79 ~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~ 123 (294)
+++|-.. ......++.++++|.|+.-.
T Consensus 462 ~~iiRD~------------------~~vl~~v~~i~~~lrW~~~~ 488 (506)
T PF03141_consen 462 WVIIRDT------------------VDVLEKVKKIAKSLRWEVRI 488 (506)
T ss_pred eEEEecc------------------HHHHHHHHHHHHhCcceEEE
Confidence 9999653 23456788899999997654
No 53
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.94 E-value=3.1e-05 Score=68.27 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=58.0
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC---CCCCcccEEEecCcCcccccCh--------HHHHHHHHh
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP---YPSRSFDVAHCSRCLVPWTSYD--------GLYLMEIDR 72 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP---fpd~sFD~V~~s~~l~h~~~d~--------~~~L~Ei~R 72 (294)
.+.+.|+++.|++.|+++ ++ .+.+..+++..++ +++++||.|++.+.. +|.... ..+++++.|
T Consensus 42 ~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd-pw~k~~h~~~r~~~~~~l~~~~r 120 (194)
T TIGR00091 42 NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD-PWPKKRHNKRRITQPHFLKEYAN 120 (194)
T ss_pred CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC-cCCCCCccccccCCHHHHHHHHH
Confidence 567789999999998764 34 4566667766554 667899999988766 554321 368999999
Q ss_pred ccCCCcEEEEEcC
Q 041513 73 VLRPGGYWVVSGP 85 (294)
Q Consensus 73 VLKPGG~~vis~p 85 (294)
+|||||.|++...
T Consensus 121 ~LkpgG~l~~~td 133 (194)
T TIGR00091 121 VLKKGGVIHFKTD 133 (194)
T ss_pred HhCCCCEEEEEeC
Confidence 9999999999874
No 54
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.93 E-value=7.4e-06 Score=75.95 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=54.5
Q ss_pred eeccCCCcHHHHHHHHHcCC-------C----cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCC
Q 041513 9 SFAPLDVHEAQVQFALERGL-------P----AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPG 77 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv-------~----~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPG 77 (294)
+++++|.++.||+.|++... + +.+.+.+.+.+ .+.||+|+|+.+++|. .++..++.-+.+.||||
T Consensus 113 ~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV-~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 113 QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHV-KDPQEFLNCLSALLKPN 188 (282)
T ss_pred eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHH-hCHHHHHHHHHHHhCCC
Confidence 56677999999999988520 1 11222334433 2339999999999765 57779999999999999
Q ss_pred cEEEEEc
Q 041513 78 GYWVVSG 84 (294)
Q Consensus 78 G~~vis~ 84 (294)
|.++++.
T Consensus 189 G~lfitt 195 (282)
T KOG1270|consen 189 GRLFITT 195 (282)
T ss_pred CceEeee
Confidence 9999987
No 55
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.92 E-value=2.2e-05 Score=70.48 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=59.7
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+...|+++.+++.|+++ +....+...+...++ ..++.||+|+++.++.| ..++..+|+++.++|+|||+++++
T Consensus 72 ~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~-~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 72 DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH-VPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc-cCCHHHHHHHHHHHcCCCcEEEEE
Confidence 466779999999999875 344555556655554 45689999999999955 456778999999999999999998
Q ss_pred cC
Q 041513 84 GP 85 (294)
Q Consensus 84 ~p 85 (294)
.+
T Consensus 151 ~~ 152 (233)
T PRK05134 151 TL 152 (233)
T ss_pred ec
Confidence 64
No 56
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.91 E-value=8.3e-06 Score=72.87 Aligned_cols=71 Identities=23% Similarity=0.177 Sum_probs=50.4
Q ss_pred cCCCcHHHHHHHHHcC--C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccC---hHHHHHHHHhccCCCcEEEEEc
Q 041513 12 PLDVHEAQVQFALERG--L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY---DGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 12 p~D~S~~mlq~A~erg--v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d---~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
..|+|+..|+.|++|- . .+.+.+++... ..|++.||+|+++.++ +|..+ ...++..+...|+|||.+++..
T Consensus 70 avDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVl-YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 70 AVDISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVL-YYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-G-GGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHh-HcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3499999999999973 3 35666666443 3689999999999999 55543 3358899999999999999965
No 57
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.87 E-value=2.9e-05 Score=68.94 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=59.9
Q ss_pred eccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCC-CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 10 FAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYP-SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
+...|.++.+++.|+++ ++ ...+...+...++.+ .++||+|++..++ |+..++..++.++.++|+|||.++++
T Consensus 70 v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l-~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 70 VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL-EHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH-HhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 55679999999999874 33 356666676666655 4889999999999 55567779999999999999999987
Q ss_pred cC
Q 041513 84 GP 85 (294)
Q Consensus 84 ~p 85 (294)
..
T Consensus 149 ~~ 150 (224)
T TIGR01983 149 TI 150 (224)
T ss_pred ec
Confidence 64
No 58
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.79 E-value=7.5e-05 Score=68.00 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=60.4
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEcc-CCCCCCCCCcccEEEecCcCccccc-------ChH----HHHHHHHhccCC
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLS-TYQLPYPSRSFDVAHCSRCLVPWTS-------YDG----LYLMEIDRVLRP 76 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d-~~~LPfpd~sFD~V~~s~~l~h~~~-------d~~----~~L~Ei~RVLKP 76 (294)
...+.|+|+.||+.|.++.+...+..+| .+-+||+.++||.|++..++ +|.- +|. .++.-++.+|++
T Consensus 74 ~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r 152 (270)
T KOG1541|consen 74 QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKR 152 (270)
T ss_pred eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhcc
Confidence 3567899999999999877765555555 58999999999999988777 6642 232 267889999999
Q ss_pred CcEEEEEcC
Q 041513 77 GGYWVVSGP 85 (294)
Q Consensus 77 GG~~vis~p 85 (294)
|++.++---
T Consensus 153 g~raV~QfY 161 (270)
T KOG1541|consen 153 GARAVLQFY 161 (270)
T ss_pred CceeEEEec
Confidence 999999653
No 59
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.79 E-value=2.2e-05 Score=69.94 Aligned_cols=75 Identities=25% Similarity=0.285 Sum_probs=60.4
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCC
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPI 87 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~ 87 (294)
+..+.|++++.+..|.++|+++....++..--.|+|++||.|+++.+|.+ ..+|..+|.|+.|| |...+++-|..
T Consensus 38 ~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~-~~~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 38 DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA-VRRPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh-HhHHHHHHHHHHHh---cCeEEEEecCh
Confidence 45677899999999999999866644444333599999999999999955 56788999999998 66888888754
No 60
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.79 E-value=2.1e-05 Score=70.95 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=54.9
Q ss_pred EEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHH
Q 041513 32 VGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLE 111 (294)
Q Consensus 32 ~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le 111 (294)
+..+|...+|++++++|+++++.+| ...+...++.|..|||||||.|.|.+--... . + -+...
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf-------~----~----~~~F~ 170 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSL--MGTNWPDFIREANRVLKPGGILKIAEVKSRF-------E----N----VKQFI 170 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG--------S---------HHHHH
T ss_pred EEEecCccCcCCCCceeEEEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEEecccC-------c----C----HHHHH
Confidence 3457899999999999999999888 3445668999999999999999998732111 0 1 13455
Q ss_pred HHHHhhceEeeecccc-----eeEeeCCC
Q 041513 112 NLATRLCWKKIAERGP-----IAVWRKPT 135 (294)
Q Consensus 112 ~l~~~lcW~~v~~~~~-----~~iw~Kp~ 135 (294)
+..+.++++...+... +..++|..
T Consensus 171 ~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 171 KALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp HHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred HHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 5677889988876443 34466665
No 61
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.78 E-value=3.6e-05 Score=73.41 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=59.5
Q ss_pred eccCCCcHHHHHHHHHcC-----------CCcEEEEcc------CCCCCCCCCcccEEEecCcCcccccC----hHHHHH
Q 041513 10 FAPLDVHEAQVQFALERG-----------LPAMVGLLS------TYQLPYPSRSFDVAHCSRCLVPWTSY----DGLYLM 68 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~erg-----------v~~~~~v~d------~~~LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~ 68 (294)
+.++|+++..|+.|++|- .++.|..+| ...+++++..||+|-|.+|+ |+.-. ...+|+
T Consensus 143 ~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~-HYaFetee~ar~~l~ 221 (389)
T KOG1975|consen 143 YIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAF-HYAFETEESARIALR 221 (389)
T ss_pred eEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeE-eeeeccHHHHHHHHH
Confidence 456699999999998762 246676665 33557778889999999999 76422 335999
Q ss_pred HHHhccCCCcEEEEEcCC
Q 041513 69 EIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 69 Ei~RVLKPGG~~vis~pp 86 (294)
.+.+.|||||+||-+.|.
T Consensus 222 Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 222 NVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred HHHhhcCCCcEEEEecCc
Confidence 999999999999999984
No 62
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.78 E-value=4.2e-05 Score=67.15 Aligned_cols=70 Identities=29% Similarity=0.249 Sum_probs=53.2
Q ss_pred eccCCCcHHHHHHHHHcCCCcEEEEccCCC-C-CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 10 FAPLDVHEAQVQFALERGLPAMVGLLSTYQ-L-PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~~-L-Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
+.+.|+|++|++.|+++++. +.+.+... + ++++++||+|+|+.++ |+..++..+++|+.|++++ .+++.|
T Consensus 39 ~~giD~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~l-~~~~d~~~~l~e~~r~~~~---~ii~~p 110 (194)
T TIGR02081 39 GYGIEIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQTL-QATRNPEEILDEMLRVGRH---AIVSFP 110 (194)
T ss_pred EEEEeCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhHh-HcCcCHHHHHHHHHHhCCe---EEEEcC
Confidence 45779999999999887754 44455443 4 4889999999999999 5556787999999998664 455544
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.77 E-value=9.1e-05 Score=64.11 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=55.5
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC--------------------hH
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY--------------------DG 64 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d--------------------~~ 64 (294)
.+...|+|++|++.|+++ ++...+...|....+ .++||+|+++..++|..+. ..
T Consensus 43 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (179)
T TIGR00537 43 CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVID 120 (179)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHH
Confidence 466789999999999874 345555556654433 4589999999877544321 13
Q ss_pred HHHHHHHhccCCCcEEEEEcC
Q 041513 65 LYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 65 ~~L~Ei~RVLKPGG~~vis~p 85 (294)
.++.++.|+|||||.+++..+
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEe
Confidence 579999999999999999875
No 64
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.75 E-value=9.9e-05 Score=58.70 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=54.0
Q ss_pred eeeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 8 MSFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
..+.+.|.|+.+++.|+++ +. ...+...+... ++....+||.|++..+..+ ...+++++.|+|||||+|+
T Consensus 44 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 44 GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEE
Confidence 3567889999999998753 33 34555555443 4444578999999876632 2479999999999999999
Q ss_pred EEc
Q 041513 82 VSG 84 (294)
Q Consensus 82 is~ 84 (294)
+..
T Consensus 120 ~~~ 122 (124)
T TIGR02469 120 LNA 122 (124)
T ss_pred EEe
Confidence 875
No 65
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.71 E-value=4.7e-05 Score=70.72 Aligned_cols=87 Identities=20% Similarity=0.287 Sum_probs=62.2
Q ss_pred EEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHH
Q 041513 32 VGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLE 111 (294)
Q Consensus 32 ~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le 111 (294)
+..+|...+|++|+|.|+++++.+| ...+...++.|++|||||||.++|.+--..+ .+.. .+.
T Consensus 214 V~~cDm~~vPl~d~svDvaV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf-----------~dv~----~f~ 276 (325)
T KOG3045|consen 214 VIACDMRNVPLEDESVDVAVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEVKSRF-----------SDVK----GFV 276 (325)
T ss_pred eeeccccCCcCccCcccEEEeeHhh--hcccHHHHHHHHHHHhccCceEEEEehhhhc-----------ccHH----HHH
Confidence 4557888999999999999988777 3556778999999999999999998732211 1112 244
Q ss_pred HHHHhhceEeeecccc-----eeEeeCCC
Q 041513 112 NLATRLCWKKIAERGP-----IAVWRKPT 135 (294)
Q Consensus 112 ~l~~~lcW~~v~~~~~-----~~iw~Kp~ 135 (294)
+-+..|++........ +..++|+.
T Consensus 277 r~l~~lGF~~~~~d~~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 277 RALTKLGFDVKHKDVSNKYFTLFEFKKTP 305 (325)
T ss_pred HHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence 4556778877665544 33466664
No 66
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.71 E-value=0.00029 Score=61.81 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=53.5
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+...|.|++|++.|+++ ++ .+.+..++++.++ .+++||+|+|.. + + +...+++++.|+|||||.+++.
T Consensus 68 ~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-~---~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 68 KLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-A---SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-h---CHHHHHHHHHHhcCCCCEEEEE
Confidence 366779999999887653 45 3566677777764 367999998864 4 2 3346889999999999999987
Q ss_pred cC
Q 041513 84 GP 85 (294)
Q Consensus 84 ~p 85 (294)
..
T Consensus 142 ~~ 143 (181)
T TIGR00138 142 KG 143 (181)
T ss_pred cC
Confidence 54
No 67
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.70 E-value=9.7e-05 Score=66.59 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=57.5
Q ss_pred eeeccCCCcHHHHHHHHH-cCC----------------CcEEEEccCCCCCCC-CCcccEEEecCcCcccccCh-HHHHH
Q 041513 8 MSFAPLDVHEAQVQFALE-RGL----------------PAMVGLLSTYQLPYP-SRSFDVAHCSRCLVPWTSYD-GLYLM 68 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~e-rgv----------------~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~h~~~d~-~~~L~ 68 (294)
..+.+.|+|+.+++.|.+ .++ .+.+.++|...++.. ...||.|+-..+++|+..+. ..+++
T Consensus 57 ~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~ 136 (213)
T TIGR03840 57 HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAA 136 (213)
T ss_pred CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHH
Confidence 467788999999998633 332 355677887776643 46799999998887875443 35899
Q ss_pred HHHhccCCCcEEEEEc
Q 041513 69 EIDRVLRPGGYWVVSG 84 (294)
Q Consensus 69 Ei~RVLKPGG~~vis~ 84 (294)
.+.++|||||++++.+
T Consensus 137 ~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 137 HLLALLPPGARQLLIT 152 (213)
T ss_pred HHHHHcCCCCeEEEEE
Confidence 9999999999866653
No 68
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=4.7e-06 Score=71.89 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=46.9
Q ss_pred ccCCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCCCcEEEEEcCCCC
Q 041513 35 LSTYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRPGGYWVVSGPPIS 88 (294)
Q Consensus 35 ~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKPGG~~vis~pp~~ 88 (294)
-.....+|.++|.|+|.|.+++.|+..+.+ .+++|++|+|||||++-++.|...
T Consensus 36 ~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 36 RASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred hhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 346788999999999999999999875544 699999999999999999998654
No 69
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.65 E-value=1.5e-05 Score=72.94 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=62.7
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEccCC-CCC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLSTY-QLP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~-~LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
-+.+.|+|++|++.|.++|+.-.+.++++. -++ ..+..||+|++..++ .+....+.++.-+.+.|+|||.|.||..
T Consensus 149 ~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl-~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 149 RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL-PYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH-HhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 356789999999999999976555555533 233 567889999999999 7777888999999999999999999973
No 70
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.64 E-value=8.5e-05 Score=69.50 Aligned_cols=74 Identities=27% Similarity=0.373 Sum_probs=53.5
Q ss_pred eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccc-cChHHHHHHHHhccCCCcEE
Q 041513 8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-SYDGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-~d~~~~L~Ei~RVLKPGG~~ 80 (294)
..+.++.+|++|++.|+++ |+. +.+...|...++. .||.|++..++.|.. .+-..+++++.|+|||||.+
T Consensus 86 ~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 86 CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp -EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence 3566778999999999764 553 5566667666544 899999999999985 34458999999999999999
Q ss_pred EEEc
Q 041513 81 VVSG 84 (294)
Q Consensus 81 vis~ 84 (294)
++-.
T Consensus 163 ~lq~ 166 (273)
T PF02353_consen 163 VLQT 166 (273)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8743
No 71
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.62 E-value=0.0002 Score=67.17 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=51.8
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+...|+++.|++.|+++ ++............++.++.||+|++.... + ....++.++.|+|||||+|++++
T Consensus 184 ~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-~---~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 184 KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-E---VIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-H---HHHHHHHHHHHHcCCCcEEEEEe
Confidence 467789999999999875 232222111111344567899999997654 2 22368999999999999999998
Q ss_pred C
Q 041513 85 P 85 (294)
Q Consensus 85 p 85 (294)
.
T Consensus 260 i 260 (288)
T TIGR00406 260 I 260 (288)
T ss_pred C
Confidence 4
No 72
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.60 E-value=0.00012 Score=71.72 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=58.6
Q ss_pred eeeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCC--CCCCCcccEEEecCcCcccccCh------HHHHHHHHhcc
Q 041513 8 MSFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSYD------GLYLMEIDRVL 74 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d~------~~~L~Ei~RVL 74 (294)
..+.+.|++..|++.|.++ ++ ++.+..+|+..+ ++++++||.|++.+.. +|.... ..++.|+.|+|
T Consensus 147 ~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvL 225 (390)
T PRK14121 147 KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVL 225 (390)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC-CccccchhhccHHHHHHHHHHHc
Confidence 3567789999998888654 45 455566776554 6899999999987765 665332 37999999999
Q ss_pred CCCcEEEEEc
Q 041513 75 RPGGYWVVSG 84 (294)
Q Consensus 75 KPGG~~vis~ 84 (294)
||||.+.+.+
T Consensus 226 kpGG~l~l~T 235 (390)
T PRK14121 226 KPGGTLELRT 235 (390)
T ss_pred CCCcEEEEEE
Confidence 9999999976
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.60 E-value=0.00017 Score=64.13 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=52.4
Q ss_pred eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+...|++++|++.|+++ ++. +.+..+|......+..+||+|++..++.|. ..++.|+|||||++++
T Consensus 99 ~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 99 KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVI 171 (205)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEE
Confidence 466789999999999864 332 556667766554456799999999887432 3588999999999988
Q ss_pred Ec
Q 041513 83 SG 84 (294)
Q Consensus 83 s~ 84 (294)
..
T Consensus 172 ~~ 173 (205)
T PRK13944 172 PV 173 (205)
T ss_pred EE
Confidence 65
No 74
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.58 E-value=0.00023 Score=52.84 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=56.5
Q ss_pred eeeccCCCcHHHHHHHHHc---C--CCcEEEEccCCCCCC-CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 8 MSFAPLDVHEAQVQFALER---G--LPAMVGLLSTYQLPY-PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er---g--v~~~~~v~d~~~LPf-pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
..+...|.++.+++.+++. . ....+...+...... ..+.||+|++..++.++.......++.+.+.|||||+++
T Consensus 22 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~ 101 (107)
T cd02440 22 ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLV 101 (107)
T ss_pred CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEE
Confidence 3566679999999988721 1 234555556554443 568899999999984435566789999999999999998
Q ss_pred EE
Q 041513 82 VS 83 (294)
Q Consensus 82 is 83 (294)
++
T Consensus 102 ~~ 103 (107)
T cd02440 102 LT 103 (107)
T ss_pred EE
Confidence 86
No 75
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.58 E-value=7.8e-05 Score=66.50 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=56.3
Q ss_pred eeccCCCcHHHHHHHHHcC----C--CcEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEEE
Q 041513 9 SFAPLDVHEAQVQFALERG----L--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg----v--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~v 81 (294)
.+.+.|+|++|++.|+++. . .+.+.+.+...++ ++||+|++..+++|+.. +...++.++.|++++|+++.
T Consensus 79 ~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 79 IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 5678899999999998752 2 4567777777765 88999999999977643 34578999999999877766
Q ss_pred EE
Q 041513 82 VS 83 (294)
Q Consensus 82 is 83 (294)
++
T Consensus 156 ~~ 157 (219)
T TIGR02021 156 FA 157 (219)
T ss_pred EC
Confidence 54
No 76
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.57 E-value=0.0002 Score=67.27 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=54.8
Q ss_pred eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~v 81 (294)
.+...|. +.+++.|+++ ++ .+.+...|....+++. +|+|++++++|+|.++. ..+|+++.|+|||||+++
T Consensus 175 ~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~ 251 (306)
T TIGR02716 175 DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLL 251 (306)
T ss_pred EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEE
Confidence 3445576 6888888654 44 2456667766666764 69999999997775443 469999999999999999
Q ss_pred EEcC
Q 041513 82 VSGP 85 (294)
Q Consensus 82 is~p 85 (294)
+...
T Consensus 252 i~d~ 255 (306)
T TIGR02716 252 ILDM 255 (306)
T ss_pred EEEe
Confidence 9864
No 77
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.56 E-value=0.00013 Score=68.94 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=57.4
Q ss_pred eeeeccCCCcHHHHHHHHHc--------CCC----------------------------cEEEEccCCCCCCC-CCcccE
Q 041513 7 TMSFAPLDVHEAQVQFALER--------GLP----------------------------AMVGLLSTYQLPYP-SRSFDV 49 (294)
Q Consensus 7 t~s~ap~D~S~~mlq~A~er--------gv~----------------------------~~~~v~d~~~LPfp-d~sFD~ 49 (294)
.+.|.+.|+|+.+|+.|++- +++ +.|...+....+++ .+.||+
T Consensus 147 ~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~ 226 (287)
T PRK10611 147 RWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDA 226 (287)
T ss_pred CcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcce
Confidence 35788999999999999753 110 13334444443443 678999
Q ss_pred EEecCcCcccccC-hHHHHHHHHhccCCCcEEEEEc
Q 041513 50 AHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 50 V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
|+|..+++|+... ...++..+.+.|+|||+|++..
T Consensus 227 I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 227 IFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 9999999887543 3469999999999999987754
No 78
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.52 E-value=0.00021 Score=68.15 Aligned_cols=77 Identities=23% Similarity=0.145 Sum_probs=58.1
Q ss_pred eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecC--cC-----cccc-cChHHHHHHHHhccC
Q 041513 9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSR--CL-----VPWT-SYDGLYLMEIDRVLR 75 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~--~l-----~h~~-~d~~~~L~Ei~RVLK 75 (294)
.+.+.|+++.|++.|+++ ++. +.+...|+..+|+++++||+|++.- .. .+.. +....++.++.|+||
T Consensus 206 ~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk 285 (329)
T TIGR01177 206 KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK 285 (329)
T ss_pred eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc
Confidence 466789999999988764 443 4566788999999999999999852 11 0101 113479999999999
Q ss_pred CCcEEEEEcC
Q 041513 76 PGGYWVVSGP 85 (294)
Q Consensus 76 PGG~~vis~p 85 (294)
|||++++..+
T Consensus 286 ~gG~lv~~~~ 295 (329)
T TIGR01177 286 SEGWIVYAVP 295 (329)
T ss_pred CCcEEEEEEc
Confidence 9999999876
No 79
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.51 E-value=0.0002 Score=67.54 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=53.7
Q ss_pred eeeccCCCcHHHHHHHHHc------CCCcEEEEccCCC-CCCCCCc----ccEEEecCcCcccccC-hHHHHHHHHhccC
Q 041513 8 MSFAPLDVHEAQVQFALER------GLPAMVGLLSTYQ-LPYPSRS----FDVAHCSRCLVPWTSY-DGLYLMEIDRVLR 75 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er------gv~~~~~v~d~~~-LPfpd~s----FD~V~~s~~l~h~~~d-~~~~L~Ei~RVLK 75 (294)
..+.+.|+|++||+.|+++ ++++...++|... ++++... ..++++..++.|+..+ ...+|+++.++|+
T Consensus 89 ~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~ 168 (301)
T TIGR03438 89 ARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLG 168 (301)
T ss_pred CeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcC
Confidence 4678899999999999775 1344455677544 4555443 3344455567555422 3358999999999
Q ss_pred CCcEEEEEcC
Q 041513 76 PGGYWVVSGP 85 (294)
Q Consensus 76 PGG~~vis~p 85 (294)
|||.|++..+
T Consensus 169 pgG~~lig~d 178 (301)
T TIGR03438 169 PGGGLLIGVD 178 (301)
T ss_pred CCCEEEEecc
Confidence 9999999774
No 80
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.51 E-value=0.00022 Score=63.99 Aligned_cols=54 Identities=19% Similarity=0.046 Sum_probs=41.9
Q ss_pred cEEEEccCCCC--------CCCCCcccEEEecCcCcccccCh-----------HHHHHHHHhccCCCcEEEEEc
Q 041513 30 AMVGLLSTYQL--------PYPSRSFDVAHCSRCLVPWTSYD-----------GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 30 ~~~~v~d~~~L--------Pfpd~sFD~V~~s~~l~h~~~d~-----------~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+.+.++|.... ++++++||+|+|..+. |+..++ ..+|+++.|+|||||.|++..
T Consensus 93 v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 93 VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 55666776665 3778999999998877 554332 358999999999999999975
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.49 E-value=0.00057 Score=65.95 Aligned_cols=104 Identities=16% Similarity=0.126 Sum_probs=69.0
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccc----cChHHHHHHHHhccCCCcEE
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT----SYDGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~----~d~~~~L~Ei~RVLKPGG~~ 80 (294)
.+...|+|+.|++.|+++ ++...+...|... ..++.||+|+|+..+|+.. .....+++++.|.|||||.|
T Consensus 222 ~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 222 RLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEE
Confidence 466789999999999763 4555555455432 2367899999998883322 12357999999999999999
Q ss_pred EEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEee
Q 041513 81 VVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWR 132 (294)
Q Consensus 81 vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~ 132 (294)
++..+..- ..+ ..|++... ..+.+++.....+++
T Consensus 300 ~iVan~~l---------~y~-------~~l~~~Fg--~~~~la~~~~f~v~~ 333 (342)
T PRK09489 300 RIVANAFL---------PYP-------DLLDETFG--SHEVLAQTGRFKVYR 333 (342)
T ss_pred EEEEeCCC---------ChH-------HHHHHHcC--CeEEEEeCCCEEEEE
Confidence 99875210 111 12333332 347777777777775
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.44 E-value=0.0003 Score=64.51 Aligned_cols=66 Identities=26% Similarity=0.286 Sum_probs=47.0
Q ss_pred eccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 10 FAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
+.+.|+|+.|++.|+++ ++...+ .++..+.+||+|+|.... + ....++.++.|+|||||+|++++.
T Consensus 145 v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~~-~---~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 145 VLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANILA-N---PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCcH-H---HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 67789999999999875 231111 122223389999987543 2 223688999999999999999874
No 83
>PRK04266 fibrillarin; Provisional
Probab=97.42 E-value=0.00037 Score=63.44 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=48.6
Q ss_pred eeccCCCcHHHHHHHHHcC---CCcEEEEccCCC----CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQ----LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~----LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
.+...|++++|++.+.++. .++.+..+|+.. .+++ .+||+|++.... . .....++.|+.|+|||||+|+
T Consensus 98 ~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~~-p--~~~~~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 98 VVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVAQ-P--NQAEIAIDNAEFFLKDGGYLL 173 (226)
T ss_pred eEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCCC-h--hHHHHHHHHHHHhcCCCcEEE
Confidence 4667799999998654431 245555566543 2333 569999865332 1 122357899999999999999
Q ss_pred EEcC
Q 041513 82 VSGP 85 (294)
Q Consensus 82 is~p 85 (294)
++.+
T Consensus 174 I~v~ 177 (226)
T PRK04266 174 LAIK 177 (226)
T ss_pred EEEe
Confidence 9754
No 84
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.42 E-value=0.00037 Score=63.06 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=55.9
Q ss_pred eeeccCCCcHHHHHHHH-HcCC----------------CcEEEEccCCCCCCC-CCcccEEEecCcCcccccCh-HHHHH
Q 041513 8 MSFAPLDVHEAQVQFAL-ERGL----------------PAMVGLLSTYQLPYP-SRSFDVAHCSRCLVPWTSYD-GLYLM 68 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~-ergv----------------~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~h~~~d~-~~~L~ 68 (294)
..+.+.|+|+..|+.|. ++++ .+.+.++|...++.. ...||.|+-..+++|+.... ..+++
T Consensus 60 ~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~ 139 (218)
T PRK13255 60 HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQ 139 (218)
T ss_pred CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHH
Confidence 46778899999999864 4443 245566777766543 36899999999987775443 36999
Q ss_pred HHHhccCCCcEEEE
Q 041513 69 EIDRVLRPGGYWVV 82 (294)
Q Consensus 69 Ei~RVLKPGG~~vi 82 (294)
.+.++|||||.+++
T Consensus 140 ~l~~lL~pgG~~~l 153 (218)
T PRK13255 140 QLAALLPAGCRGLL 153 (218)
T ss_pred HHHHHcCCCCeEEE
Confidence 99999999997554
No 85
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.40 E-value=0.00019 Score=69.04 Aligned_cols=76 Identities=29% Similarity=0.493 Sum_probs=53.8
Q ss_pred eccCCCcHHHHHHHHHcC---------------CCcEEEEccCCC------CCCCCCcccEEEecCcCcccccChH---H
Q 041513 10 FAPLDVHEAQVQFALERG---------------LPAMVGLLSTYQ------LPYPSRSFDVAHCSRCLVPWTSYDG---L 65 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~erg---------------v~~~~~v~d~~~------LPfpd~sFD~V~~s~~l~h~~~d~~---~ 65 (294)
+.+.|+|...|+.|++|- ..+.+..+|... ++.+...||+|-|.+++|+...... .
T Consensus 88 ~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~ 167 (331)
T PF03291_consen 88 YVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQ 167 (331)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHH
Confidence 456799999999998874 245556665331 2333469999999999954444432 4
Q ss_pred HHHHHHhccCCCcEEEEEcC
Q 041513 66 YLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 66 ~L~Ei~RVLKPGG~~vis~p 85 (294)
+|..+.+.|||||+|+.+.|
T Consensus 168 ~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 168 FLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEec
Confidence 89999999999999999987
No 86
>PRK14967 putative methyltransferase; Provisional
Probab=97.39 E-value=0.00055 Score=61.48 Aligned_cols=76 Identities=21% Similarity=0.176 Sum_probs=53.2
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCccccc--------------------ChH
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS--------------------YDG 64 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~--------------------d~~ 64 (294)
.+...|+++.|++.|+++ ++.+.+...+... .+++++||+|++.--+.+-.. ...
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLD 139 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHH
Confidence 567789999999988764 4455555566543 356789999999743311111 023
Q ss_pred HHHHHHHhccCCCcEEEEEcC
Q 041513 65 LYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 65 ~~L~Ei~RVLKPGG~~vis~p 85 (294)
.+++++.++|||||++++...
T Consensus 140 ~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 140 RLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred HHHHHHHHhcCCCcEEEEEEe
Confidence 478899999999999998754
No 87
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.39 E-value=0.00093 Score=58.92 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=52.9
Q ss_pred eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
.+...|.++.|++.|+++ ++ .+.+...+... ++..++.||.|++.... .+...++.++.|+|||||+++
T Consensus 67 ~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 67 KVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS----EKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCc----ccHHHHHHHHHHHcCCCcEEE
Confidence 466779999999998764 42 34555556544 34445789999986432 345689999999999999999
Q ss_pred EEcC
Q 041513 82 VSGP 85 (294)
Q Consensus 82 is~p 85 (294)
+...
T Consensus 143 ~~~~ 146 (198)
T PRK00377 143 IDAI 146 (198)
T ss_pred EEee
Confidence 8553
No 88
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.32 E-value=0.00059 Score=63.44 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=55.7
Q ss_pred eccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 10 FAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+...+.|..|....++||..+.- .....-.+..||+|.|..+| .-.+.|..+|++|++.|+|+|+++++.
T Consensus 119 v~aTE~S~~Mr~rL~~kg~~vl~----~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 119 VYATEASPPMRWRLSKKGFTVLD----IDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred EEeecCCHHHHHHHHhCCCeEEe----hhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 45569999999999999975332 22222235679999999999 667788899999999999999999975
No 89
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.29 E-value=0.00072 Score=60.58 Aligned_cols=69 Identities=12% Similarity=-0.003 Sum_probs=52.7
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+...|++++|++.|+++ ++ ++.+..+|....+.+++.||+|++...+.+ ...++.+.|||||++++.
T Consensus 103 ~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 103 KVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEE
Confidence 466779999999999875 34 366667777766667789999999877632 234677899999999885
Q ss_pred c
Q 041513 84 G 84 (294)
Q Consensus 84 ~ 84 (294)
.
T Consensus 176 ~ 176 (212)
T PRK13942 176 V 176 (212)
T ss_pred E
Confidence 4
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=97.29 E-value=0.0021 Score=55.03 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=52.8
Q ss_pred eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCCCCCCCCcccEEEecCcCcccc--------------------c
Q 041513 9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT--------------------S 61 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~--------------------~ 61 (294)
.+...|.|+.|++.|+++ +.. +.+...|... ++++++||+|++...+.+.. .
T Consensus 47 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (188)
T PRK14968 47 KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGRE 125 (188)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHH
Confidence 456779999999999764 332 5555566433 45667999999875442210 0
Q ss_pred ChHHHHHHHHhccCCCcEEEEEcC
Q 041513 62 YDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 62 d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
....+++++.++|||||.+++..+
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEc
Confidence 123579999999999999988765
No 91
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.27 E-value=0.0013 Score=57.21 Aligned_cols=70 Identities=11% Similarity=-0.005 Sum_probs=50.9
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+...|+++.|++.|+++ ++ .+.+...+.. .++ .+.||+|++..... ....++.++.++|||||++++.
T Consensus 57 ~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 57 QVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEE
Confidence 466779999999999763 33 3444444442 344 35799999987652 2346899999999999999986
Q ss_pred c
Q 041513 84 G 84 (294)
Q Consensus 84 ~ 84 (294)
.
T Consensus 131 ~ 131 (187)
T PRK08287 131 F 131 (187)
T ss_pred E
Confidence 5
No 92
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.23 E-value=0.0018 Score=58.15 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=53.4
Q ss_pred eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcc------cccC---------------
Q 041513 9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVP------WTSY--------------- 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h------~~~d--------------- 62 (294)
.+.+.|+++.+++.|+++ ++. +.+..++... ++++++||+|+|.--++. +...
T Consensus 113 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~ 191 (251)
T TIGR03534 113 RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED 191 (251)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc
Confidence 567789999999999764 443 5566666554 567889999998532211 1000
Q ss_pred ----hHHHHHHHHhccCCCcEEEEEcC
Q 041513 63 ----DGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 63 ----~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
...++.++.++|+|||.+++...
T Consensus 192 ~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 192 GLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred HHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 12578899999999999999653
No 93
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.00021 Score=67.10 Aligned_cols=75 Identities=27% Similarity=0.261 Sum_probs=63.0
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh--HHHHHHHHhccCCCcEEEEEc
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+++-|.+...+.-|++.|.. ...++|+..+|+++.+||.+++..++||+.... ..+++|+.|+|||||...+..
T Consensus 67 ~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 67 LIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred eeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 577889999999999887754 344588999999999999999999998876433 369999999999999977755
No 94
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.22 E-value=0.001 Score=63.17 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=51.5
Q ss_pred ccCCCcHHHHHHHHHc-CCCcE-EEE-ccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 11 APLDVHEAQVQFALER-GLPAM-VGL-LSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 11 ap~D~S~~mlq~A~er-gv~~~-~~v-~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
-|....-.|-+++++- |.... +.. .+.+.||. .++||+|+|..+|+|- .+|-..|.++...|||||.+++-+
T Consensus 145 DP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 145 DPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEE
Confidence 3333334444444442 33322 322 47899998 8999999999999874 567799999999999999999843
No 95
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.21 E-value=0.0021 Score=63.75 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=55.2
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCC----CCCCcccEEEe----c--CcCcccccC-----------
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLP----YPSRSFDVAHC----S--RCLVPWTSY----------- 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LP----fpd~sFD~V~~----s--~~l~h~~~d----------- 62 (294)
.+...|++++|++.++++ |+ .+.+...|+..++ +.+++||.|++ + .++.+ .++
T Consensus 279 ~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r-~p~~~~~~~~~~~~ 357 (434)
T PRK14901 279 EIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHR-HPDARWRQTPEKIQ 357 (434)
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCccccccc-CcchhhhCCHHHHH
Confidence 466779999999998764 55 3566667777665 55789999995 3 23322 111
Q ss_pred -----hHHHHHHHHhccCCCcEEEEEcC
Q 041513 63 -----DGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 63 -----~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
...+|.++.++|||||++++++-
T Consensus 358 ~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 358 ELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 24689999999999999999874
No 96
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.19 E-value=0.00044 Score=61.79 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=51.0
Q ss_pred eeeeccCCCcHHHHHHHHHc--------CC-------------------------CcEEEEccCCCCCCCCCcccEEEec
Q 041513 7 TMSFAPLDVHEAQVQFALER--------GL-------------------------PAMVGLLSTYQLPYPSRSFDVAHCS 53 (294)
Q Consensus 7 t~s~ap~D~S~~mlq~A~er--------gv-------------------------~~~~~v~d~~~LPfpd~sFD~V~~s 53 (294)
.+.|-+.|+|+.+|+.|++- ++ .+.|...+....+.+.+.||+|+|-
T Consensus 64 ~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CR 143 (196)
T PF01739_consen 64 DFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCR 143 (196)
T ss_dssp SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-
T ss_pred ceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEec
Confidence 57889999999999999752 11 1344445544444457889999999
Q ss_pred CcCcccccCh-HHHHHHHHhccCCCcEEEEEc
Q 041513 54 RCLVPWTSYD-GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 54 ~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+++++.... ..+++.+++.|+|||+|++..
T Consensus 144 NVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 144 NVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 9998876543 369999999999999999965
No 97
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.19 E-value=0.00079 Score=64.33 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=48.7
Q ss_pred eeccCCCcHHHHHHHHHcC----------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCCC
Q 041513 9 SFAPLDVHEAQVQFALERG----------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRPG 77 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg----------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKPG 77 (294)
.+.+.|+|+.|++.|+++. ..+.+.+.|.+.+ +++||+|+|..+++|+.++.. .+++.+.+ +.+|
T Consensus 168 ~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g 243 (315)
T PLN02585 168 IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK 243 (315)
T ss_pred EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC
Confidence 5778899999999998863 1234555554433 688999999999988765432 35556655 4555
Q ss_pred cEEEEEcCC
Q 041513 78 GYWVVSGPP 86 (294)
Q Consensus 78 G~~vis~pp 86 (294)
|. +++..|
T Consensus 244 ~l-iIs~~p 251 (315)
T PLN02585 244 RL-IISFAP 251 (315)
T ss_pred EE-EEEeCC
Confidence 55 555443
No 98
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.18 E-value=0.0019 Score=63.90 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=54.6
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCC--CCCCcccEEE----ecCc--Cc-----ccccC---------
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLP--YPSRSFDVAH----CSRC--LV-----PWTSY--------- 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LP--fpd~sFD~V~----~s~~--l~-----h~~~d--------- 62 (294)
.+...|.|+.|++.++++ |+.+.+.+.|+..++ ++.++||.|+ |+.. +. .|...
T Consensus 270 ~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~ 349 (427)
T PRK10901 270 QVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAA 349 (427)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHH
Confidence 466779999999999764 455666667776654 4567899999 4421 10 12111
Q ss_pred -hHHHHHHHHhccCCCcEEEEEcC
Q 041513 63 -DGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 63 -~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
...+|.++.++|||||++++++-
T Consensus 350 ~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 350 LQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12589999999999999999874
No 99
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.15 E-value=0.0034 Score=54.12 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=51.6
Q ss_pred eccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccC-----hHHHHHHHHhccCCCcE
Q 041513 10 FAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-----DGLYLMEIDRVLRPGGY 79 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-----~~~~L~Ei~RVLKPGG~ 79 (294)
+...|+++.+++.|++. ++. +.+...|... +++++.||+|+|.-=+ |...+ ...++.+..+.|||||.
T Consensus 58 v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~ 135 (170)
T PF05175_consen 58 VTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF-HAGGDDGLDLLRDFIEQARRYLKPGGR 135 (170)
T ss_dssp EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---S-BTTSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccch-hcccccchhhHHHHHHHHHHhccCCCE
Confidence 56679999999999873 455 5555555322 3448999999998554 32222 34689999999999999
Q ss_pred EEEEcC
Q 041513 80 WVVSGP 85 (294)
Q Consensus 80 ~vis~p 85 (294)
|++...
T Consensus 136 l~lv~~ 141 (170)
T PF05175_consen 136 LFLVIN 141 (170)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 988664
No 100
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.14 E-value=0.00076 Score=60.15 Aligned_cols=76 Identities=13% Similarity=0.274 Sum_probs=54.8
Q ss_pred eeeccCCCcHHHHHHHH----HcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEEEE
Q 041513 8 MSFAPLDVHEAQVQFAL----ERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~----ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vi 82 (294)
..+...|.|+..++.+. ++++++...+.|.....++ +.||+|++..++.|...+. ...+..+...++|||++++
T Consensus 53 ~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 53 FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp -EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 45667788988877654 4578888888887777775 6799999988885544332 3588999999999999888
Q ss_pred Ec
Q 041513 83 SG 84 (294)
Q Consensus 83 s~ 84 (294)
..
T Consensus 132 ~~ 133 (192)
T PF03848_consen 132 VT 133 (192)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 101
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.12 E-value=0.0026 Score=62.90 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=53.7
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEE--EEccCCCCCC--CCCcccEEEe----c--CcCcccccC------------
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMV--GLLSTYQLPY--PSRSFDVAHC----S--RCLVPWTSY------------ 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~--~v~d~~~LPf--pd~sFD~V~~----s--~~l~h~~~d------------ 62 (294)
.+...|+++.+++.++++ |+...+ ..++...+++ ++++||.|++ + .++.+ .++
T Consensus 264 ~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~-~p~~~~~~~~~~~~~ 342 (426)
T TIGR00563 264 QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRR-HPDIKWLRKPRDIAE 342 (426)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCccccc-CcchhhcCCHHHHHH
Confidence 466779999999998764 555333 3345544444 6788999984 2 23322 111
Q ss_pred ----hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513 63 ----DGLYLMEIDRVLRPGGYWVVSGPPI 87 (294)
Q Consensus 63 ----~~~~L~Ei~RVLKPGG~~vis~pp~ 87 (294)
...+|.++.|+|||||++++++-.+
T Consensus 343 l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 343 LAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2469999999999999999998544
No 102
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.12 E-value=0.00091 Score=59.44 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=50.4
Q ss_pred eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC-hHHHHHHHHhccCCCcEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-DGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-~~~~L~Ei~RVLKPGG~~v 81 (294)
.+.+.|+|++|++.|+++ +. .+.+..++ ++..+++||+|+|..+++|+.+. ...+++++.+.+++++.+.
T Consensus 87 ~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 87 KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 367789999999999875 22 34455454 55667899999999999776533 3468889999876554433
No 103
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.10 E-value=0.0021 Score=58.67 Aligned_cols=77 Identities=12% Similarity=0.060 Sum_probs=60.7
Q ss_pred eeeccCCCcHHHHHHHHH-----------------cCCCcEEEEccCCCCCCC---CCcccEEEecCcCcccccCh-HHH
Q 041513 8 MSFAPLDVHEAQVQFALE-----------------RGLPAMVGLLSTYQLPYP---SRSFDVAHCSRCLVPWTSYD-GLY 66 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~e-----------------rgv~~~~~v~d~~~LPfp---d~sFD~V~~s~~l~h~~~d~-~~~ 66 (294)
..+.+.|+|+..|+.+.+ ++..+.+.++|...++.. .+.||+|+=..+|+++.++. ..+
T Consensus 66 ~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y 145 (226)
T PRK13256 66 VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNY 145 (226)
T ss_pred CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHH
Confidence 467788999999999755 234677888888777642 36899999888998876554 359
Q ss_pred HHHHHhccCCCcEEEEEc
Q 041513 67 LMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 67 L~Ei~RVLKPGG~~vis~ 84 (294)
.+.+.++|+|||.+++..
T Consensus 146 ~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 146 AKMMLEVCSNNTQILLLV 163 (226)
T ss_pred HHHHHHHhCCCcEEEEEE
Confidence 999999999999988865
No 104
>PTZ00146 fibrillarin; Provisional
Probab=97.08 E-value=0.0014 Score=62.06 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=48.3
Q ss_pred eccCCCcHH----HHHHHHHcCCCcEEEEccCCC---CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 10 FAPLDVHEA----QVQFALERGLPAMVGLLSTYQ---LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 10 ~ap~D~S~~----mlq~A~ergv~~~~~v~d~~~---LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
+...|+|+. |++.|+++ .++.+.+.|+.. ++++..+||+|++.... .++...++.|+.|+|||||+|++
T Consensus 160 VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 160 VYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCCC---cchHHHHHHHHHHhccCCCEEEE
Confidence 555688875 55666554 245555666532 23344689999988752 23444677899999999999999
Q ss_pred EcC
Q 041513 83 SGP 85 (294)
Q Consensus 83 s~p 85 (294)
...
T Consensus 236 ~ik 238 (293)
T PTZ00146 236 SIK 238 (293)
T ss_pred EEe
Confidence 653
No 105
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.07 E-value=0.0025 Score=48.58 Aligned_cols=74 Identities=26% Similarity=0.331 Sum_probs=55.4
Q ss_pred eccCCCcHHHHHHHHHcCC--C---cEEEEccCCC--CCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 10 FAPLDVHEAQVQFALERGL--P---AMVGLLSTYQ--LPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~ergv--~---~~~~v~d~~~--LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
+.+.|.+..|++.++.... . +.+...+... +++.+ ..||++ +.....|+.. ....+.++.|+|+|+|.++
T Consensus 75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~ 152 (257)
T COG0500 75 VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLP-PAKALRELLRVLKPGGRLV 152 (257)
T ss_pred EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehhcCC-HHHHHHHHHHhcCCCcEEE
Confidence 3348999999998665431 1 2445555554 88988 599999 7766656655 6689999999999999999
Q ss_pred EEcC
Q 041513 82 VSGP 85 (294)
Q Consensus 82 is~p 85 (294)
+...
T Consensus 153 ~~~~ 156 (257)
T COG0500 153 LSDL 156 (257)
T ss_pred EEec
Confidence 9874
No 106
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.01 E-value=0.0018 Score=57.85 Aligned_cols=69 Identities=17% Similarity=0.068 Sum_probs=51.3
Q ss_pred eccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 10 FAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+...|.+++|++.|+++ ++ .+.+...+..........||+|++..+.. .+..++.+.|||||++++..
T Consensus 105 V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 105 VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcEEEEEE
Confidence 66779999999999875 44 35666667655544567899999887652 23456889999999999865
Q ss_pred C
Q 041513 85 P 85 (294)
Q Consensus 85 p 85 (294)
.
T Consensus 178 ~ 178 (215)
T TIGR00080 178 G 178 (215)
T ss_pred c
Confidence 3
No 107
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.00 E-value=0.0037 Score=62.15 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=54.8
Q ss_pred eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEe----cCc--Cc-----ccccC----------
Q 041513 9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHC----SRC--LV-----PWTSY---------- 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~----s~~--l~-----h~~~d---------- 62 (294)
.+...|+|+.|++.++++ |+. +.+.+.|+..++ ++++||+|++ +.. +. +|...
T Consensus 277 ~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~ 355 (445)
T PRK14904 277 QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGL 355 (445)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHH
Confidence 466789999999998764 554 456667777665 5678999994 221 10 11111
Q ss_pred hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513 63 DGLYLMEIDRVLRPGGYWVVSGPPI 87 (294)
Q Consensus 63 ~~~~L~Ei~RVLKPGG~~vis~pp~ 87 (294)
...+|.++.++|||||++++++-.+
T Consensus 356 q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 356 QAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2258999999999999999988533
No 108
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.96 E-value=0.0014 Score=63.92 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=57.3
Q ss_pred ccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 11 APLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 11 ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+.|.++.++..+.+. ++ ...+.+.+....||++++||.|-+..+.+| ..+...+++|+.||++|||+++...
T Consensus 137 ~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~-~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 137 VGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH-APDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc-CCcHHHHHHHHhcccCCCceEEeHH
Confidence 4557777777776553 22 233455678899999999999999999966 4567799999999999999999864
No 109
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.94 E-value=0.0084 Score=54.03 Aligned_cols=42 Identities=29% Similarity=0.577 Sum_probs=36.1
Q ss_pred CCCcccEEEecCcCcccccCh--HHHHHHHHhccCCCcEEEEEcC
Q 041513 43 PSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 43 pd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKPGG~~vis~p 85 (294)
..++||+|+|..++ |+..-. +.+|++..++|+|||.|++.+|
T Consensus 99 ~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 99 SPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 46799999999999 876443 3599999999999999999987
No 110
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.90 E-value=0.0017 Score=61.12 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=56.2
Q ss_pred eeeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCccccc-ChHHHHHHHHhccCCCcEE
Q 041513 8 MSFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-YDGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-d~~~~L~Ei~RVLKPGG~~ 80 (294)
..+.+.++|++|.+.|+++ |++ +.+...|-..+ .+.||-|++..+++|+.. +-..+++-+.++|+|||.+
T Consensus 96 v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 96 VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 4567789999999999874 554 44444443333 344999999999988764 3458999999999999999
Q ss_pred EEEc
Q 041513 81 VVSG 84 (294)
Q Consensus 81 vis~ 84 (294)
++-.
T Consensus 173 llh~ 176 (283)
T COG2230 173 LLHS 176 (283)
T ss_pred EEEE
Confidence 8854
No 111
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.90 E-value=0.00069 Score=53.72 Aligned_cols=78 Identities=26% Similarity=0.395 Sum_probs=56.6
Q ss_pred eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCC--CCCCcccEEEecCcCccccc-------ChHHHHHHHHh
Q 041513 8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTS-------YDGLYLMEIDR 72 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~-------d~~~~L~Ei~R 72 (294)
..+...|+++..++.|+++ +. ++.+.+.|...++ +++++||+|++.-=+..... .-..+++++.|
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~ 103 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAAR 103 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 4677889999999999874 23 4677778866665 88999999999755532211 12368999999
Q ss_pred ccCCCcEEEEEcC
Q 041513 73 VLRPGGYWVVSGP 85 (294)
Q Consensus 73 VLKPGG~~vis~p 85 (294)
+|||||.+++..+
T Consensus 104 ~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 104 LLKPGGVLVFITP 116 (117)
T ss_dssp HEEEEEEEEEEEE
T ss_pred HcCCCeEEEEEeC
Confidence 9999999998753
No 112
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.86 E-value=0.0053 Score=60.99 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=55.4
Q ss_pred eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCC-CCCCcccEEEec---CcCcccccC-----------------
Q 041513 9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLP-YPSRSFDVAHCS---RCLVPWTSY----------------- 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LP-fpd~sFD~V~~s---~~l~h~~~d----------------- 62 (294)
.+...|+|+.+++.++++ |+. +.+.+.|+..++ +.+++||.|++- ..+..+..+
T Consensus 264 ~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~ 343 (431)
T PRK14903 264 KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSE 343 (431)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHH
Confidence 566779999999999764 553 456667777776 557889999861 111111111
Q ss_pred -hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513 63 -DGLYLMEIDRVLRPGGYWVVSGPPI 87 (294)
Q Consensus 63 -~~~~L~Ei~RVLKPGG~~vis~pp~ 87 (294)
...+|.++.+.|||||++++++-.+
T Consensus 344 ~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 344 IQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2347899999999999999988533
No 113
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.82 E-value=0.0058 Score=56.59 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=54.8
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEe----cC--cCcc-------cc--------cC
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHC----SR--CLVP-------WT--------SY 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~----s~--~l~h-------~~--------~d 62 (294)
.+...|+++.+++.++++ ++ .+.+...|+..++...+.||.|++ +. ++.+ +. ..
T Consensus 98 ~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~ 177 (264)
T TIGR00446 98 AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISAL 177 (264)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHH
Confidence 466789999999988764 44 345556677666666677999985 22 1211 11 01
Q ss_pred hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513 63 DGLYLMEIDRVLRPGGYWVVSGPPI 87 (294)
Q Consensus 63 ~~~~L~Ei~RVLKPGG~~vis~pp~ 87 (294)
...+|.++.+.|||||++++++-.+
T Consensus 178 q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 178 QKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2348999999999999999998544
No 114
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.80 E-value=0.0031 Score=61.76 Aligned_cols=74 Identities=9% Similarity=-0.000 Sum_probs=52.7
Q ss_pred eeccCCCcHHHHHHHHHc----CC----CcEEEEccCCCCCCCCCcccEEEecCcCccccc-----ChHHHHHHHHhccC
Q 041513 9 SFAPLDVHEAQVQFALER----GL----PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTS-----YDGLYLMEIDRVLR 75 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv----~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~-----d~~~~L~Ei~RVLK 75 (294)
.+...|+|+.|++.|+++ +. .+.+...+... .+++.+||+|+|.--+ |... ....+++++.|+||
T Consensus 254 ~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPf-h~~~~~~~~ia~~l~~~a~~~Lk 331 (378)
T PRK15001 254 KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPF-HQQHALTDNVAWEMFHHARRCLK 331 (378)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCc-ccCccCCHHHHHHHHHHHHHhcc
Confidence 456779999999999874 22 23444444322 2455689999998777 3321 12468999999999
Q ss_pred CCcEEEEEc
Q 041513 76 PGGYWVVSG 84 (294)
Q Consensus 76 PGG~~vis~ 84 (294)
|||.|++..
T Consensus 332 pGG~L~iV~ 340 (378)
T PRK15001 332 INGELYIVA 340 (378)
T ss_pred cCCEEEEEE
Confidence 999999986
No 115
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.78 E-value=0.003 Score=58.30 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=57.4
Q ss_pred eeeccCCCcHHHHHHHHHcCC------CcEEEEcc--CCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCc
Q 041513 8 MSFAPLDVHEAQVQFALERGL------PAMVGLLS--TYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGG 78 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~ergv------~~~~~v~d--~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG 78 (294)
+.+..-|.|+..|++.+++.. .+.+...+ ...-|.+.+++|+|++.++|.-.+.+. ..++..+.|+|||||
T Consensus 98 l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG 177 (264)
T KOG2361|consen 98 LKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGG 177 (264)
T ss_pred eEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCc
Confidence 556677999999999987642 12222222 224577899999999999996555443 369999999999999
Q ss_pred EEEEEc
Q 041513 79 YWVVSG 84 (294)
Q Consensus 79 ~~vis~ 84 (294)
.+++..
T Consensus 178 ~llfrD 183 (264)
T KOG2361|consen 178 SLLFRD 183 (264)
T ss_pred EEEEee
Confidence 999975
No 116
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.70 E-value=0.0059 Score=54.18 Aligned_cols=70 Identities=16% Similarity=0.031 Sum_probs=49.9
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+...|.++++++.|+++ ++ .+.+...+......+.+.||+|++..++.+ ...++.+.|+|||.+++.
T Consensus 102 ~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 102 RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEE
Confidence 355679999999999874 34 355555664332223578999999877632 345778999999999997
Q ss_pred cC
Q 041513 84 GP 85 (294)
Q Consensus 84 ~p 85 (294)
..
T Consensus 175 ~~ 176 (212)
T PRK00312 175 VG 176 (212)
T ss_pred Ec
Confidence 64
No 117
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.54 E-value=0.014 Score=54.57 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=51.9
Q ss_pred eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecC-------------cCccccc--------
Q 041513 9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSR-------------CLVPWTS-------- 61 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~-------------~l~h~~~-------- 61 (294)
.+...|+|+.+++.|+++ ++. +.+..+|... +++++.||+|++.- ++ ++.+
T Consensus 140 ~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~-~~eP~~AL~gg~ 217 (284)
T TIGR00536 140 EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVV-RFEPLLALVGGD 217 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCccc-ccCcHHHhcCCC
Confidence 466779999999999874 343 5566666433 45566899999851 12 1111
Q ss_pred ----ChHHHHHHHHhccCCCcEEEEEcC
Q 041513 62 ----YDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 62 ----d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
....++.++.+.|+|||++++...
T Consensus 218 dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 218 DGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 123578899999999999988664
No 118
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.54 E-value=0.014 Score=53.44 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=50.4
Q ss_pred eeccCCCcHHHHHHHHHc---C--CCcEEEEccCCCCCCCCCcccEEEecCcCccc------c-----------------
Q 041513 9 SFAPLDVHEAQVQFALER---G--LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPW------T----------------- 60 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er---g--v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~------~----------------- 60 (294)
.+.+.|+|+.+++.|+++ . ..+.+...|... ++++++||+|+|.--.+.. .
T Consensus 134 ~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~ 212 (275)
T PRK09328 134 EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGED 212 (275)
T ss_pred EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCC
Confidence 466779999999999875 2 245565566432 3446899999985221100 0
Q ss_pred --cChHHHHHHHHhccCCCcEEEEEc
Q 041513 61 --SYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 61 --~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.....++.++.++|||||++++..
T Consensus 213 g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 213 GLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 011357888889999999999954
No 119
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.0055 Score=59.19 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=60.4
Q ss_pred CceeeeeccCCCcHHHHHHHHHc----CCC-c-EEEEccCCCCCCCCCcccEEEec--CcCc---ccc---cChHHHHHH
Q 041513 4 NILTMSFAPLDVHEAQVQFALER----GLP-A-MVGLLSTYQLPYPSRSFDVAHCS--RCLV---PWT---SYDGLYLME 69 (294)
Q Consensus 4 ~v~t~s~ap~D~S~~mlq~A~er----gv~-~-~~~v~d~~~LPfpd~sFD~V~~s--~~l~---h~~---~d~~~~L~E 69 (294)
+.++....+.|+.+.|++-|+.+ +++ . ....+|+..+||++++||.|+|- +... .-. +--..+|.+
T Consensus 216 gl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~ 295 (347)
T COG1041 216 GLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALES 295 (347)
T ss_pred hhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHH
Confidence 35666778889999999999875 232 2 23345999999999999999973 1110 111 112469999
Q ss_pred HHhccCCCcEEEEEcC
Q 041513 70 IDRVLRPGGYWVVSGP 85 (294)
Q Consensus 70 i~RVLKPGG~~vis~p 85 (294)
+.++||+||++++..|
T Consensus 296 ~~evLk~gG~~vf~~p 311 (347)
T COG1041 296 ASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHhhcCcEEEEecC
Confidence 9999999999999987
No 120
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.46 E-value=0.011 Score=53.69 Aligned_cols=88 Identities=19% Similarity=0.273 Sum_probs=59.4
Q ss_pred ccCCCCCC---CCCcccEEEecCcCcccccChH---HHHHHHHhccCCCcE-----EEEEcCC-CCccccCCCcccChHH
Q 041513 35 LSTYQLPY---PSRSFDVAHCSRCLVPWTSYDG---LYLMEIDRVLRPGGY-----WVVSGPP-ISWKTSYRGWERDAKD 102 (294)
Q Consensus 35 ~d~~~LPf---pd~sFD~V~~s~~l~h~~~d~~---~~L~Ei~RVLKPGG~-----~vis~pp-~~~~~~~~~w~~~~e~ 102 (294)
+|-...|+ +++.||+|.||.+| .+++++. ..++-+.+.|||+|. |++..|. ---.++|.
T Consensus 90 qDFm~rplp~~~~e~FdvIs~SLVL-NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~-------- 160 (219)
T PF11968_consen 90 QDFMERPLPKNESEKFDVISLSLVL-NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM-------- 160 (219)
T ss_pred eccccCCCCCCcccceeEEEEEEEE-eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc--------
Confidence 45445555 47899999999999 8887763 599999999999999 8887752 11111111
Q ss_pred HHHHHHHHHHHHHhhceEeeecccc----eeEeeCC
Q 041513 103 LQKEQISLENLATRLCWKKIAERGP----IAVWRKP 134 (294)
Q Consensus 103 l~~~~~~le~l~~~lcW~~v~~~~~----~~iw~Kp 134 (294)
..+.+..+...+++..+..+.. .-.|+|.
T Consensus 161 ---~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~ 193 (219)
T PF11968_consen 161 ---TEERLREIMESLGFTRVKYKKSKKLAYWLFRKS 193 (219)
T ss_pred ---CHHHHHHHHHhCCcEEEEEEecCeEEEEEEeec
Confidence 1245666778888888766443 2346654
No 121
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.44 E-value=0.0089 Score=56.06 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=51.3
Q ss_pred eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecC------cCc----ccccCh---------
Q 041513 9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSR------CLV----PWTSYD--------- 63 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~------~l~----h~~~d~--------- 63 (294)
.+.+.|+|+.+++.|+++ ++. +.+..+|... ++++++||+|+|.- .+. .+..++
T Consensus 147 ~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~d 225 (284)
T TIGR03533 147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGED 225 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCc
Confidence 566789999999999875 442 5566666432 34567899999851 010 010111
Q ss_pred -----HHHHHHHHhccCCCcEEEEEcC
Q 041513 64 -----GLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 64 -----~~~L~Ei~RVLKPGG~~vis~p 85 (294)
..++.++.++|+|||++++-..
T Consensus 226 Gl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 226 GLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3578899999999999998654
No 122
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.44 E-value=0.0056 Score=53.38 Aligned_cols=69 Identities=17% Similarity=0.065 Sum_probs=43.4
Q ss_pred eccCCCcHHHHHHHHHcCCCcEEEEccCCCCC--------CCCCcccEEEecCcCc---ccccC-------hHHHHHHHH
Q 041513 10 FAPLDVHEAQVQFALERGLPAMVGLLSTYQLP--------YPSRSFDVAHCSRCLV---PWTSY-------DGLYLMEID 71 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LP--------fpd~sFD~V~~s~~l~---h~~~d-------~~~~L~Ei~ 71 (294)
+...|+|+.+ ....+.+...+....+ +++++||+|++..+.+ +|..+ ...++.++.
T Consensus 60 v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 133 (188)
T TIGR00438 60 VIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAK 133 (188)
T ss_pred EEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 3445666544 1123445555654432 5678899999865421 11111 247999999
Q ss_pred hccCCCcEEEEEc
Q 041513 72 RVLRPGGYWVVSG 84 (294)
Q Consensus 72 RVLKPGG~~vis~ 84 (294)
++|||||+|++..
T Consensus 134 ~~LkpgG~lvi~~ 146 (188)
T TIGR00438 134 EVLKPKGNFVVKV 146 (188)
T ss_pred HHccCCCEEEEEE
Confidence 9999999999965
No 123
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.39 E-value=0.006 Score=57.20 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=58.7
Q ss_pred ccCCCCCCCC---CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHH
Q 041513 35 LSTYQLPYPS---RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLE 111 (294)
Q Consensus 35 ~d~~~LPfpd---~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le 111 (294)
+|...+.-++ ++||+|++++-+ .-..+.-..|..|.++|||||++|=.+| ..|.....+ ...+..++-.+++|.
T Consensus 151 GDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpgG~WIN~GP-Llyh~~~~~-~~~~~sveLs~eEi~ 227 (270)
T PF07942_consen 151 GDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPGGYWINFGP-LLYHFEPMS-IPNEMSVELSLEEIK 227 (270)
T ss_pred CccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccCCEEEecCC-ccccCCCCC-CCCCcccCCCHHHHH
Confidence 4444443344 799999988554 4445555799999999999997766665 433211100 011122444578899
Q ss_pred HHHHhhceEeeecccce
Q 041513 112 NLATRLCWKKIAERGPI 128 (294)
Q Consensus 112 ~l~~~lcW~~v~~~~~~ 128 (294)
.+++.++|+.+.+...+
T Consensus 228 ~l~~~~GF~~~~~~~~i 244 (270)
T PF07942_consen 228 ELIEKLGFEIEKEESSI 244 (270)
T ss_pred HHHHHCCCEEEEEEEee
Confidence 99999999998765533
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.38 E-value=0.023 Score=56.46 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=52.8
Q ss_pred eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCC--CCCCcccEEEecC------cCcc-----cccC--------
Q 041513 9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLP--YPSRSFDVAHCSR------CLVP-----WTSY-------- 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LP--fpd~sFD~V~~s~------~l~h-----~~~d-------- 62 (294)
.+...|+++.+++.++++ |+. +.+.+.|+..++ ++ ++||+|++-- .+.+ |...
T Consensus 277 ~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~ 355 (444)
T PRK14902 277 KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQ 355 (444)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHH
Confidence 566779999999998764 443 556667766543 44 7899999631 1111 1111
Q ss_pred --hHHHHHHHHhccCCCcEEEEEcCCC
Q 041513 63 --DGLYLMEIDRVLRPGGYWVVSGPPI 87 (294)
Q Consensus 63 --~~~~L~Ei~RVLKPGG~~vis~pp~ 87 (294)
...+|.++.|+|||||++++++..+
T Consensus 356 ~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 356 EIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1247999999999999999987543
No 125
>PRK00811 spermidine synthase; Provisional
Probab=96.38 E-value=0.019 Score=53.80 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=52.4
Q ss_pred eeccCCCcHHHHHHHHHcC----------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC----hHHHHHHHHhc
Q 041513 9 SFAPLDVHEAQVQFALERG----------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRV 73 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg----------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RV 73 (294)
.+...|+++++++.|++.- ..+.+...|+.. +...++.||+|++-.+- ++... ...+++++.|.
T Consensus 102 ~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~ 180 (283)
T PRK00811 102 KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTD-PVGPAEGLFTKEFYENCKRA 180 (283)
T ss_pred EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCC-CCCchhhhhHHHHHHHHHHh
Confidence 4666799999999998741 124455566433 34457899999986543 33222 14678999999
Q ss_pred cCCCcEEEEEc
Q 041513 74 LRPGGYWVVSG 84 (294)
Q Consensus 74 LKPGG~~vis~ 84 (294)
|+|||.+++..
T Consensus 181 L~~gGvlv~~~ 191 (283)
T PRK00811 181 LKEDGIFVAQS 191 (283)
T ss_pred cCCCcEEEEeC
Confidence 99999998854
No 126
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.37 E-value=0.021 Score=50.06 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=48.8
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+...|.++.|++.|+++ ++ ++.+...++.. ++.-...+|.++... ..+...++.++.|+|+|||+|++
T Consensus 66 ~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 66 RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEE
Confidence 456679999999999864 44 34555555432 322223467665422 23445899999999999999999
Q ss_pred EcC
Q 041513 83 SGP 85 (294)
Q Consensus 83 s~p 85 (294)
..+
T Consensus 141 ~~~ 143 (196)
T PRK07402 141 TAS 143 (196)
T ss_pred Eee
Confidence 875
No 127
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.32 E-value=0.023 Score=56.50 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=50.8
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCC-CCcccEEEecCcCcccc--------------------cC-
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYP-SRSFDVAHCSRCLVPWT--------------------SY- 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfp-d~sFD~V~~s~~l~h~~--------------------~d- 62 (294)
.+...|+|++|++.|+++ +..+.+..+|.....++ .++||+|+|.-=.+.-. ++
T Consensus 277 ~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dG 356 (423)
T PRK14966 277 FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDG 356 (423)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCch
Confidence 466789999999999874 44566766775443333 46899999953211100 01
Q ss_pred ---hHHHHHHHHhccCCCcEEEEEcC
Q 041513 63 ---DGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 63 ---~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
...++.++.+.|+|||++++...
T Consensus 357 L~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 357 LSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 12466677889999999887553
No 128
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.07 E-value=0.0073 Score=60.50 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=55.4
Q ss_pred eccCCCcHHHHHHHHHcC---C-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHH---------HHHHHHhccCC
Q 041513 10 FAPLDVHEAQVQFALERG---L-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGL---------YLMEIDRVLRP 76 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~erg---v-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~---------~L~Ei~RVLKP 76 (294)
|.-.|+|.-.+.....++ . ...+...+...+.|+|.+||+|+--..+.+...+... .+.|+.|+|+|
T Consensus 74 I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~ 153 (482)
T KOG2352|consen 74 ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAP 153 (482)
T ss_pred ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhcc
Confidence 344567766666666554 2 2445567899999999999999999988766554433 46899999999
Q ss_pred CcEEEEEc
Q 041513 77 GGYWVVSG 84 (294)
Q Consensus 77 GG~~vis~ 84 (294)
||+++...
T Consensus 154 ~gk~~svt 161 (482)
T KOG2352|consen 154 GGKYISVT 161 (482)
T ss_pred CCEEEEEE
Confidence 99977754
No 129
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.95 E-value=0.024 Score=53.89 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=51.3
Q ss_pred eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecC---------c----Ccccc-------cC
Q 041513 9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSR---------C----LVPWT-------SY 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~---------~----l~h~~-------~d 62 (294)
.+.+.|+|+.+++.|+++ ++ .+.+..+|... ++++++||+|+|.- . +.|.. ++
T Consensus 159 ~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d 237 (307)
T PRK11805 159 EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD 237 (307)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc
Confidence 566789999999999875 44 25566666432 34567899999861 0 11110 01
Q ss_pred ----hHHHHHHHHhccCCCcEEEEEcC
Q 041513 63 ----DGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 63 ----~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
-..+++++.++|+|||++++-..
T Consensus 238 Gl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 238 GLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred hHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 13578999999999999998643
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.94 E-value=0.019 Score=55.05 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=49.7
Q ss_pred eccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 10 FAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+...|.+++|++.|+++ ++. +.+..+|....+.+...||+|++...+.+ ....+.++|+|||.+++..
T Consensus 108 VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 108 VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 56679999999999863 443 45556676666556678999999866632 2345778999999998854
No 131
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.89 E-value=0.012 Score=53.26 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=49.4
Q ss_pred CCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCC--cEEEEEcC
Q 041513 14 DVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPG--GYWVVSGP 85 (294)
Q Consensus 14 D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPG--G~~vis~p 85 (294)
|. ++.++.|++ .-.+.+..+|.. -|+|. +|+++..++||+|.++. ..+|+.+.+.|+|| |+++|...
T Consensus 131 Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 131 DL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp E--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred cc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 44 556666666 334566556655 67777 99999999998887654 35999999999999 99999874
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=95.88 E-value=0.025 Score=53.29 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=57.9
Q ss_pred eeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccC-------------------hHHHHH
Q 041513 8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY-------------------DGLYLM 68 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d-------------------~~~~L~ 68 (294)
..+...|+++.|++.|+++...+.+.+.|...+.. +.+||+|++.-.+.|.... ....++
T Consensus 89 ~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~ 167 (279)
T PHA03411 89 EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFA 167 (279)
T ss_pred CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHh
Confidence 35778899999999998874456677778776653 5789999998777553211 135678
Q ss_pred HHHhccCCCcEEEEE--cCCCC
Q 041513 69 EIDRVLRPGGYWVVS--GPPIS 88 (294)
Q Consensus 69 Ei~RVLKPGG~~vis--~pp~~ 88 (294)
.+.++|+|+|.+++. +.|++
T Consensus 168 ~v~~~L~p~G~~~~~yss~~~y 189 (279)
T PHA03411 168 DVGYFIVPTGSAGFAYSGRPYY 189 (279)
T ss_pred hhHheecCCceEEEEEeccccc
Confidence 889999999987764 34554
No 133
>PRK04457 spermidine synthase; Provisional
Probab=95.86 E-value=0.048 Score=50.59 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=51.0
Q ss_pred eeeccCCCcHHHHHHHHHc-CC-----CcEEEEccCCC-CCCCCCcccEEEecCcCccc--c--cChHHHHHHHHhccCC
Q 041513 8 MSFAPLDVHEAQVQFALER-GL-----PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPW--T--SYDGLYLMEIDRVLRP 76 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er-gv-----~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~--~--~d~~~~L~Ei~RVLKP 76 (294)
..+...|+++++++.|++. +. .+.+.++|+.. +.-..++||+|++-. +..- . .....+++++.++|+|
T Consensus 91 ~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~p 169 (262)
T PRK04457 91 TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSS 169 (262)
T ss_pred CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCC
Confidence 3466779999999999985 21 24555566432 232346899999752 2111 1 1124799999999999
Q ss_pred CcEEEEEc
Q 041513 77 GGYWVVSG 84 (294)
Q Consensus 77 GG~~vis~ 84 (294)
||.|++..
T Consensus 170 gGvlvin~ 177 (262)
T PRK04457 170 DGIFVVNL 177 (262)
T ss_pred CcEEEEEc
Confidence 99999964
No 134
>PRK03612 spermidine synthase; Provisional
Probab=95.67 E-value=0.036 Score=56.39 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=51.9
Q ss_pred eeccCCCcHHHHHHHHHcC------------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC-----hHHHHHHH
Q 041513 9 SFAPLDVHEAQVQFALERG------------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY-----DGLYLMEI 70 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg------------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d-----~~~~L~Ei 70 (294)
.+...|++++|++.|++.. ..+.+...|+.. +...+++||+|++.... +.... ...+++++
T Consensus 323 ~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~ 401 (521)
T PRK03612 323 QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPD-PSNPALGKLYSVEFYRLL 401 (521)
T ss_pred eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCC-CCCcchhccchHHHHHHH
Confidence 4556699999999999831 124455566443 33345789999987543 32221 12588999
Q ss_pred HhccCCCcEEEEEc
Q 041513 71 DRVLRPGGYWVVSG 84 (294)
Q Consensus 71 ~RVLKPGG~~vis~ 84 (294)
.+.|||||.+++..
T Consensus 402 ~~~L~pgG~lv~~~ 415 (521)
T PRK03612 402 KRRLAPDGLLVVQS 415 (521)
T ss_pred HHhcCCCeEEEEec
Confidence 99999999999865
No 135
>PRK01581 speE spermidine synthase; Validated
Probab=95.61 E-value=0.024 Score=55.47 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=50.9
Q ss_pred eeccCCCcHHHHHHHHHc------------CCCcEEEEccCCC-CCCCCCcccEEEecCcCccccc-----ChHHHHHHH
Q 041513 9 SFAPLDVHEAQVQFALER------------GLPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTS-----YDGLYLMEI 70 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er------------gv~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~-----d~~~~L~Ei 70 (294)
.+...|++++|++.|++. +..+.+.+.|+.. +.-.++.||+|++-..- +... ....+++.+
T Consensus 176 ~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~ 254 (374)
T PRK01581 176 HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPD-PATELLSTLYTSELFARI 254 (374)
T ss_pred eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCC-ccccchhhhhHHHHHHHH
Confidence 355569999999999961 1234555566443 44556789999987422 1110 113589999
Q ss_pred HhccCCCcEEEEEc
Q 041513 71 DRVLRPGGYWVVSG 84 (294)
Q Consensus 71 ~RVLKPGG~~vis~ 84 (294)
.+.|+|||.|+...
T Consensus 255 ~~~LkPgGV~V~Qs 268 (374)
T PRK01581 255 ATFLTEDGAFVCQS 268 (374)
T ss_pred HHhcCCCcEEEEec
Confidence 99999999988864
No 136
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.017 Score=54.85 Aligned_cols=72 Identities=26% Similarity=0.349 Sum_probs=51.0
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+.+.|+.+-.++.|+++ +++..........+..+. ..||+|+|+-.- + ....+..++.+.|||||++++|
T Consensus 187 ~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA-~---vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 187 KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA-E---VLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH-H---HHHHHHHHHHHHcCCCceEEEE
Confidence 456779999999999874 454312222233444555 599999988533 2 2236889999999999999999
Q ss_pred c
Q 041513 84 G 84 (294)
Q Consensus 84 ~ 84 (294)
+
T Consensus 263 G 263 (300)
T COG2264 263 G 263 (300)
T ss_pred e
Confidence 8
No 137
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=95.57 E-value=0.025 Score=52.23 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=49.6
Q ss_pred EEEEccCCCC--CCCCCcccEEEec---CcCcccccChHHHHHHHHhccCCCcEEEEEc-CCCCccccCCCcccChHHHH
Q 041513 31 MVGLLSTYQL--PYPSRSFDVAHCS---RCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG-PPISWKTSYRGWERDAKDLQ 104 (294)
Q Consensus 31 ~~~v~d~~~L--Pfpd~sFD~V~~s---~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~-pp~~~~~~~~~w~~~~e~l~ 104 (294)
.+..+|+.++ .|+|.|||+|+.- +++ --.-.-+.+.+|++|+|||||.++.-. .|-. .++| .
T Consensus 188 ~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~-AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---ryrG--------~ 255 (287)
T COG2521 188 KIILGDAYEVVKDFDDESFDAIIHDPPRFSL-AGELYSEEFYRELYRILKRGGRLFHYVGNPGK---RYRG--------L 255 (287)
T ss_pred EEecccHHHHHhcCCccccceEeeCCCccch-hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---cccc--------C
Confidence 3344554333 5899999999731 111 001123468899999999999988754 3321 1111 1
Q ss_pred HHHHHHHHHHHhhceEeeeccc
Q 041513 105 KEQISLENLATRLCWKKIAERG 126 (294)
Q Consensus 105 ~~~~~le~l~~~lcW~~v~~~~ 126 (294)
..++.+.+.+.+.++..+....
T Consensus 256 d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 256 DLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred ChhHHHHHHHHhcCceeeeeeh
Confidence 2345566667778888665533
No 138
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.53 E-value=0.014 Score=53.05 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCCcHHHHHHHHHcC-----CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCCCcEEEEEcCC
Q 041513 13 LDVHEAQVQFALERG-----LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 13 ~D~S~~mlq~A~erg-----v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKPGG~~vis~pp 86 (294)
.|..+..++.|++.- .-..+.+.+.+..--+.+.||+|.+.+|+.|..++.- .+|+-+...|+|||.+++-++-
T Consensus 84 VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 84 VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 378889999998632 1234556677766545689999999999999876543 6999999999999999996631
Q ss_pred CCcc----ccCC-CcccChHHHHHHHHHHHHHHHhhceEeeecccc
Q 041513 87 ISWK----TSYR-GWERDAKDLQKEQISLENLATRLCWKKIAERGP 127 (294)
Q Consensus 87 ~~~~----~~~~-~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~ 127 (294)
..-. +... -+.|+.+ .+.+|.+.-..+.+.+..+
T Consensus 164 ~~~~~~~~D~~DsSvTRs~~-------~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 164 SSSGFDEFDEEDSSVTRSDE-------HFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp ESSSEEEEETTTTEEEEEHH-------HHHHHHHHCT-EEEEEEE-
T ss_pred CCCCCcccCCccCeeecCHH-------HHHHHHHHcCCEEEEeccc
Confidence 1100 0000 1334433 4566677777777775443
No 139
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.43 E-value=0.074 Score=49.32 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=49.7
Q ss_pred eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCC-CCCCCCcccEEEecCcCcccccC----hHHHHHHHHhcc
Q 041513 9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRVL 74 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RVL 74 (294)
.+...|+++++++.|++.- ..+.+...|+.. +.-.++.||+|++.... +.... ...+++.+.+.|
T Consensus 98 ~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~-~~~~~~~l~~~ef~~~~~~~L 176 (270)
T TIGR00417 98 KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTD-PVGPAETLFTKEFYELLKKAL 176 (270)
T ss_pred eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCC-CCCcccchhHHHHHHHHHHHh
Confidence 4556699999999998741 123344444322 22235789999986553 22221 236889999999
Q ss_pred CCCcEEEEEc
Q 041513 75 RPGGYWVVSG 84 (294)
Q Consensus 75 KPGG~~vis~ 84 (294)
+|||.+++..
T Consensus 177 ~pgG~lv~~~ 186 (270)
T TIGR00417 177 NEDGIFVAQS 186 (270)
T ss_pred CCCcEEEEcC
Confidence 9999999875
No 140
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=95.36 E-value=0.045 Score=48.91 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=55.7
Q ss_pred eccCCCcHHHHHHHHH----cCCC--cEEEEccCCCCCCCCCcccEEEecCcCc--cccc-----ChHHHHHHHHhccCC
Q 041513 10 FAPLDVHEAQVQFALE----RGLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLV--PWTS-----YDGLYLMEIDRVLRP 76 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~e----rgv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~--h~~~-----d~~~~L~Ei~RVLKP 76 (294)
+.+.|.|++.++.|+. ++.+ +.|.++|...-.|..+.||+|+=-.++- .... .+..++.-+.++|+|
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~ 173 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP 173 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence 6788999999999853 3554 7888888766688889999997544331 1111 112488899999999
Q ss_pred CcEEEEEc
Q 041513 77 GGYWVVSG 84 (294)
Q Consensus 77 GG~~vis~ 84 (294)
||+|+|..
T Consensus 174 ~gifvItS 181 (227)
T KOG1271|consen 174 GGIFVITS 181 (227)
T ss_pred CcEEEEEe
Confidence 99999976
No 141
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.35 E-value=0.016 Score=53.92 Aligned_cols=39 Identities=31% Similarity=0.464 Sum_probs=33.0
Q ss_pred cccEEEecCcCcccccChH---HHHHHHHhccCCCcEEEEEc
Q 041513 46 SFDVAHCSRCLVPWTSYDG---LYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 46 sFD~V~~s~~l~h~~~d~~---~~L~Ei~RVLKPGG~~vis~ 84 (294)
.||+|++++|+.--..+.. .+++.+.+.|||||+|++.+
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5999999999966666654 49999999999999999976
No 142
>PRK13699 putative methylase; Provisional
Probab=95.28 E-value=0.039 Score=50.20 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=29.5
Q ss_pred CCCCCcccEEEec--Cc--Cccccc----------ChHHHHHHHHhccCCCcEEEEEc
Q 041513 41 PYPSRSFDVAHCS--RC--LVPWTS----------YDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 41 Pfpd~sFD~V~~s--~~--l~h~~~----------d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+|++++|+|++. +. ..+... -....+.|+.|||||||.+++..
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5788889998876 11 101000 01368899999999999988743
No 143
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=94.93 E-value=0.15 Score=47.45 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=61.9
Q ss_pred CCCcHHHHHHHHHc----CC-C-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513 13 LDVHEAQVQFALER----GL-P-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 13 ~D~S~~mlq~A~er----gv-~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
.|..++..+.|+++ ++ + +.+...|....-+++ .||+|+.- .++|-.++..+..+|||||.+++-.|-
T Consensus 125 yE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 125 YEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLD------LPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred EEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEc------CCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 48899999999875 33 3 555566766666666 89999743 235558999999999999999998873
Q ss_pred CCccccCCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513 87 ISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123 (294)
Q Consensus 87 ~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~ 123 (294)
+ +|.++.++.|.+. ||..+.
T Consensus 198 v----------------eQv~kt~~~l~~~-g~~~ie 217 (256)
T COG2519 198 V----------------EQVEKTVEALRER-GFVDIE 217 (256)
T ss_pred H----------------HHHHHHHHHHHhc-Cccchh
Confidence 3 3455555555554 775543
No 144
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.83 E-value=0.12 Score=52.47 Aligned_cols=75 Identities=9% Similarity=0.086 Sum_probs=48.7
Q ss_pred eeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecCcCc--------------cc-------cc
Q 041513 9 SFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLV--------------PW-------TS 61 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~--------------h~-------~~ 61 (294)
.+...|+|+.+++.|+++ ++ .+.+..+|... +++++.||+|+|.--.+ |. ..
T Consensus 164 ~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~ 242 (506)
T PRK01544 164 NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEE 242 (506)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCc
Confidence 466779999999999875 33 24455555322 34567899999842110 10 01
Q ss_pred Ch----HHHHHHHHhccCCCcEEEEEc
Q 041513 62 YD----GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 62 d~----~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+. ..++.++.++|+|||.+++..
T Consensus 243 dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 243 DGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 11 135678899999999998864
No 145
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.038 Score=48.51 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=53.9
Q ss_pred CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceE
Q 041513 41 PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWK 120 (294)
Q Consensus 41 Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~ 120 (294)
....++||+|+|+.|+ .+.+.-..+++-|.+.|||.|..++..|- ....+++.++.++ ...+.
T Consensus 98 q~eq~tFDiIlaADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPR------------Rg~sL~kF~de~~----~~gf~ 160 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPR------------RGQSLQKFLDEVG----TVGFT 160 (201)
T ss_pred HHhhCcccEEEeccch-hHHHHHHHHHHHHHHHhCcccceeEecCc------------ccchHHHHHHHHH----hceeE
Confidence 3456799999999999 66666667999999999999998888871 2334555555444 33444
Q ss_pred eee-cccceeEeeCCC
Q 041513 121 KIA-ERGPIAVWRKPT 135 (294)
Q Consensus 121 ~v~-~~~~~~iw~Kp~ 135 (294)
..- +..+..|||+..
T Consensus 161 v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 161 VCLEENYDEAIWQRHG 176 (201)
T ss_pred EEecccHhHHHHHHHH
Confidence 333 334467888753
No 146
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.76 E-value=0.021 Score=49.84 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=34.5
Q ss_pred CCcccEEEecCcCcccc-----c-----ChHHHHHHHHhccCCCcEEEEEcC
Q 041513 44 SRSFDVAHCSRCLVPWT-----S-----YDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 44 d~sFD~V~~s~~l~h~~-----~-----d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
.++||.+.|..++.|.. + ....+++++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 57899999998887763 1 123699999999999999999986
No 147
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.75 E-value=0.11 Score=45.54 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=50.9
Q ss_pred eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCCCCcccEEEecC--cCcccc-cCh----HHHHHHHHhcc
Q 041513 8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLPYPSRSFDVAHCSR--CLVPWT-SYD----GLYLMEIDRVL 74 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfpd~sFD~V~~s~--~l~h~~-~d~----~~~L~Ei~RVL 74 (294)
..+.+.|+++.+++.|+++ ++ .+.+...|+..+++.++++|.|++.- ....-. .+. ..+++|+.|+|
T Consensus 62 ~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l 141 (179)
T PF01170_consen 62 LKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVL 141 (179)
T ss_dssp --EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHS
T ss_pred ccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHC
Confidence 3477899999999999874 44 35666778999999899999999863 221000 011 13789999999
Q ss_pred CCCcEEEEEc
Q 041513 75 RPGGYWVVSG 84 (294)
Q Consensus 75 KPGG~~vis~ 84 (294)
++...++++.
T Consensus 142 ~~~~v~l~~~ 151 (179)
T PF01170_consen 142 KPRAVFLTTS 151 (179)
T ss_dssp TTCEEEEEES
T ss_pred CCCEEEEEEC
Confidence 9955555544
No 148
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=94.71 E-value=0.13 Score=46.52 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=51.5
Q ss_pred eeeccCCCcHHHHHHHHH-cCC----------------CcEEEEccCCCCCCCC-CcccEEEecCcCcccccCh-HHHHH
Q 041513 8 MSFAPLDVHEAQVQFALE-RGL----------------PAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSYD-GLYLM 68 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~e-rgv----------------~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d~-~~~L~ 68 (294)
..+.+.|+|+..|+.|.+ ++. .+.+.++|.-.++-.. +.||+|+=..+|+-...+. ....+
T Consensus 60 ~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~ 139 (218)
T PF05724_consen 60 HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQ 139 (218)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHH
Confidence 467888999999999843 332 1345567766665444 4799999777775554333 36999
Q ss_pred HHHhccCCCcEEEE
Q 041513 69 EIDRVLRPGGYWVV 82 (294)
Q Consensus 69 Ei~RVLKPGG~~vi 82 (294)
.+.++|||||.+++
T Consensus 140 ~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 140 QLASLLKPGGRGLL 153 (218)
T ss_dssp HHHHCEEEEEEEEE
T ss_pred HHHHHhCCCCcEEE
Confidence 99999999999444
No 149
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.63 E-value=0.051 Score=50.94 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=54.4
Q ss_pred eeeeccCCCcHHHHHHHHHc---------CCC-------------------------cEEEEccCCCCCCCCCcccEEEe
Q 041513 7 TMSFAPLDVHEAQVQFALER---------GLP-------------------------AMVGLLSTYQLPYPSRSFDVAHC 52 (294)
Q Consensus 7 t~s~ap~D~S~~mlq~A~er---------gv~-------------------------~~~~v~d~~~LPfpd~sFD~V~~ 52 (294)
-++|-+.|++...|+.|++- +++ +.|...+...-++..+.||+|+|
T Consensus 129 ~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC 208 (268)
T COG1352 129 RVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC 208 (268)
T ss_pred ceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEE
Confidence 46788889999999999641 211 11122221111224567999999
Q ss_pred cCcCcccccCh-HHHHHHHHhccCCCcEEEEEc
Q 041513 53 SRCLVPWTSYD-GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 53 s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~vis~ 84 (294)
-.+++.+.... ..++..++..|+|||+|++-.
T Consensus 209 RNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 209 RNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 99998776443 369999999999999999954
No 150
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=94.47 E-value=0.036 Score=52.62 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=48.1
Q ss_pred eeccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 9 SFAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+.+.|+.+..++.|+++ ++...+.+.. ...+....||+|+++-.. + ....++..+.++|+|||+|++|+
T Consensus 186 ~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~-~---vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 186 KVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILA-D---VLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp EEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-H-H---HHHHHHHHCHHHEEEEEEEEEEE
T ss_pred eEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCH-H---HHHHHHHHHHHhhCCCCEEEEcc
Confidence 355679999999999874 5544443332 233445999999987544 2 22357888999999999999998
No 151
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.11 E-value=0.12 Score=49.13 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=52.7
Q ss_pred eccCCCcHHHHHHHHHc----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChH----HHHHHHHhccCCCcEEE
Q 041513 10 FAPLDVHEAQVQFALER----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDG----LYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~----~~L~Ei~RVLKPGG~~v 81 (294)
+.-.|++...|+.|++. +++......+....+..+ +||+|+|.==+|.-..-.. +++.+..+.|++||.+.
T Consensus 185 vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 185 LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred EEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 33459999999999874 344422233434445555 9999999877733332233 68999999999999999
Q ss_pred EEcC
Q 041513 82 VSGP 85 (294)
Q Consensus 82 is~p 85 (294)
+...
T Consensus 264 iVan 267 (300)
T COG2813 264 IVAN 267 (300)
T ss_pred EEEc
Confidence 9874
No 152
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=94.05 E-value=0.091 Score=47.89 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=48.8
Q ss_pred eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCC-CC-----CCCCcccEEEecCcCcccccChHHHHHHHHhccCC
Q 041513 9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQ-LP-----YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRP 76 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~-LP-----fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKP 76 (294)
.+...|.++++++.|++. |+. +.+..+++.. |+ .++.+||+|++-.-- +.-..++.++.+.|||
T Consensus 95 ~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k----~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 95 RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK----PNYVHFHEQLLKLVKV 170 (234)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH----HHHHHHHHHHHHhcCC
Confidence 455669999999999864 442 4555566433 22 125689999875221 2223689999999999
Q ss_pred CcEEEEEc
Q 041513 77 GGYWVVSG 84 (294)
Q Consensus 77 GG~~vis~ 84 (294)
||.+++..
T Consensus 171 GG~ii~dn 178 (234)
T PLN02781 171 GGIIAFDN 178 (234)
T ss_pred CeEEEEEc
Confidence 99988743
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=93.90 E-value=0.18 Score=46.63 Aligned_cols=72 Identities=8% Similarity=0.138 Sum_probs=49.9
Q ss_pred eeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCc-----ccc------cChHHHHHHHHhccCCC
Q 041513 9 SFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLV-----PWT------SYDGLYLMEIDRVLRPG 77 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~-----h~~------~d~~~~L~Ei~RVLKPG 77 (294)
.+...|+++.+++.|++....+.+...|....++ +++||+|++.==+. +.. .....++....|+++||
T Consensus 78 ~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 78 EIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred EEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 6778899999999999765556777778766665 56899999963221 110 11234788888977777
Q ss_pred cEEEE
Q 041513 78 GYWVV 82 (294)
Q Consensus 78 G~~vi 82 (294)
+. |+
T Consensus 157 ~~-IL 160 (241)
T PHA03412 157 TF-II 160 (241)
T ss_pred EE-Ee
Confidence 75 44
No 154
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=93.88 E-value=0.22 Score=46.22 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=53.8
Q ss_pred eeeccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCC--CCCCcccEEEecCcCc----------------c-cccC
Q 041513 8 MSFAPLDVHEAQVQFALER----GL--PAMVGLLSTYQLP--YPSRSFDVAHCSRCLV----------------P-WTSY 62 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~----------------h-~~~d 62 (294)
..|.+.|+.++|.+.|++. +. .+.+.++|..... +.-.+||+|+|.==+. | ...+
T Consensus 69 a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~ 148 (248)
T COG4123 69 AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLD 148 (248)
T ss_pred CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCC
Confidence 3566779999999999874 12 3556666755442 3445899999963220 0 0112
Q ss_pred hHHHHHHHHhccCCCcEEEEEcCC
Q 041513 63 DGLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 63 ~~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
-+..++-..++|||||+|.+..+|
T Consensus 149 le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 149 LEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred HHHHHHHHHHHccCCCEEEEEecH
Confidence 345778888999999999999875
No 155
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=93.47 E-value=0.41 Score=48.35 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=51.1
Q ss_pred eeccCCCcHHHHHHHHHc----CCCc-EEEEccCCCCC-CCCCcccEEE----ecCcCcccccCh---------------
Q 041513 9 SFAPLDVHEAQVQFALER----GLPA-MVGLLSTYQLP-YPSRSFDVAH----CSRCLVPWTSYD--------------- 63 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~~-~~~v~d~~~LP-fpd~sFD~V~----~s~~l~h~~~d~--------------- 63 (294)
.+...|+|+.-++..+++ |+.. .+...|+..++ .....||.|+ ||..= .+..++
T Consensus 140 ~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G-~~rk~p~~~~~~s~~~v~~l~ 218 (470)
T PRK11933 140 AIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEG-TVRKDPDALKNWSPESNLEIA 218 (470)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCc-ccccCHHHhhhCCHHHHHHHH
Confidence 355669998888877653 6643 44456665542 3346799999 77432 222222
Q ss_pred ---HHHHHHHHhccCCCcEEEEEcC
Q 041513 64 ---GLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 64 ---~~~L~Ei~RVLKPGG~~vis~p 85 (294)
..+|....+.|||||+++.|+=
T Consensus 219 ~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 219 ATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECC
Confidence 3478889999999999999874
No 156
>PLN02366 spermidine synthase
Probab=93.14 E-value=0.22 Score=47.53 Aligned_cols=74 Identities=12% Similarity=0.193 Sum_probs=48.8
Q ss_pred eccCCCcHHHHHHHHHcC---------CCcEEEEccCCCC--CCCCCcccEEEecCcCcccccC----hHHHHHHHHhcc
Q 041513 10 FAPLDVHEAQVQFALERG---------LPAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSY----DGLYLMEIDRVL 74 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d----~~~~L~Ei~RVL 74 (294)
+.-.|+++.+++.|++.- ..+.+...|+... ..+++.||+|++-..- ++... ...+++.+.+.|
T Consensus 118 V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~d-p~~~~~~L~t~ef~~~~~~~L 196 (308)
T PLN02366 118 IDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSD-PVGPAQELFEKPFFESVARAL 196 (308)
T ss_pred EEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCC-CCCchhhhhHHHHHHHHHHhc
Confidence 334588899999998741 1345555664321 1246789999985443 33221 125899999999
Q ss_pred CCCcEEEEEc
Q 041513 75 RPGGYWVVSG 84 (294)
Q Consensus 75 KPGG~~vis~ 84 (294)
+|||.++.-.
T Consensus 197 ~pgGvlv~q~ 206 (308)
T PLN02366 197 RPGGVVCTQA 206 (308)
T ss_pred CCCcEEEECc
Confidence 9999997744
No 157
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=92.84 E-value=0.54 Score=43.27 Aligned_cols=77 Identities=21% Similarity=0.160 Sum_probs=48.7
Q ss_pred eeccCCCcHHHHHHHHHcC--CCcEEEEccCCC-CCC-CCCcccEEEecCcCccc------------c---------cC-
Q 041513 9 SFAPLDVHEAQVQFALERG--LPAMVGLLSTYQ-LPY-PSRSFDVAHCSRCLVPW------------T---------SY- 62 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~-LPf-pd~sFD~V~~s~~l~h~------------~---------~d- 62 (294)
.+...|+|+.+++.|+++- ....+...|... ++- ..+.||+|++.-=.+.. . .+
T Consensus 112 ~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dg 191 (251)
T TIGR03704 112 ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADG 191 (251)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcH
Confidence 4567899999999998752 123555566432 221 13579999986311100 0 01
Q ss_pred ---hHHHHHHHHhccCCCcEEEEEcC
Q 041513 63 ---DGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 63 ---~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
...++..+.++|||||.+++...
T Consensus 192 l~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 192 LDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 12566777899999999998765
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=92.78 E-value=0.17 Score=46.06 Aligned_cols=70 Identities=24% Similarity=0.270 Sum_probs=48.6
Q ss_pred eccCCCcHHHHHHHHHc----CCC--cEEEE-cc-CCCCC-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513 10 FAPLDVHEAQVQFALER----GLP--AMVGL-LS-TYQLP-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv~--~~~~v-~d-~~~LP-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~ 80 (294)
+.-.|..+++.+.|++. |+. +.... ++ .+.+. +..++||+|+.- +...+-..++.++.+.|||||.+
T Consensus 87 l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGli 162 (219)
T COG4122 87 LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLI 162 (219)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEE
Confidence 44568999999999874 443 33334 23 22222 568999999865 22233338999999999999999
Q ss_pred EEE
Q 041513 81 VVS 83 (294)
Q Consensus 81 vis 83 (294)
++-
T Consensus 163 v~D 165 (219)
T COG4122 163 VAD 165 (219)
T ss_pred EEe
Confidence 884
No 159
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.76 E-value=0.12 Score=54.41 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=51.0
Q ss_pred eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCC-CCCCCCcccEEEecC-cCc---------ccccChHHHHHHH
Q 041513 9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQ-LPYPSRSFDVAHCSR-CLV---------PWTSYDGLYLMEI 70 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~-LPfpd~sFD~V~~s~-~l~---------h~~~d~~~~L~Ei 70 (294)
++...|+|+.+++.|+++ ++. +.+..+|+.. +.-..+.||+|++.- .+. ....+-..++..+
T Consensus 563 ~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a 642 (702)
T PRK11783 563 STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDA 642 (702)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHH
Confidence 466789999999999874 342 5566666432 211156899999841 110 1111223578888
Q ss_pred HhccCCCcEEEEEcC
Q 041513 71 DRVLRPGGYWVVSGP 85 (294)
Q Consensus 71 ~RVLKPGG~~vis~p 85 (294)
.++|+|||.++++..
T Consensus 643 ~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 643 KRLLRPGGTLYFSNN 657 (702)
T ss_pred HHHcCCCCEEEEEeC
Confidence 999999999999764
No 160
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=92.68 E-value=0.26 Score=45.05 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHcCC-CcEEEEccCCCC---CCCCCcccEEEecCcCcccccCh--------HHHHHHHHhccCCCcEEEEEc
Q 041513 18 AQVQFALERGL-PAMVGLLSTYQL---PYPSRSFDVAHCSRCLVPWTSYD--------GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 18 ~mlq~A~ergv-~~~~~v~d~~~L---Pfpd~sFD~V~~s~~l~h~~~d~--------~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+++.+.+.++ ++.+.+.|+..+ -+++++.|-|+..+-= +|+... ..+++++.|+|||||.|.+.+
T Consensus 87 ~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 87 KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD-PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC-CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 34445556688 777776674433 3466799999988876 665321 259999999999999999976
No 161
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=92.40 E-value=0.3 Score=48.57 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=53.4
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCC----CCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTY----QLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY 79 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~----~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~ 79 (294)
.+.+.|+|++|++.|+++ ++ ++.+..+|+. .+++.+++||+|++.--. .. ....+..+.+ ++|++.
T Consensus 321 ~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~i 395 (443)
T PRK13168 321 EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRI 395 (443)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeE
Confidence 567789999999999874 44 4667667653 245667889999875322 11 2245555555 699999
Q ss_pred EEEEcCCCCcc
Q 041513 80 WVVSGPPISWK 90 (294)
Q Consensus 80 ~vis~pp~~~~ 90 (294)
+++|..|..++
T Consensus 396 vyvSCnp~tla 406 (443)
T PRK13168 396 VYVSCNPATLA 406 (443)
T ss_pred EEEEeChHHhh
Confidence 99999876543
No 162
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=91.93 E-value=0.2 Score=45.12 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=46.3
Q ss_pred eccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 10 FAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+...|..+.+++.|+++ ++ ++.+.++|....--+...||.|++..+.. . .-.++.+-||+||++++-.
T Consensus 100 Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~---~----ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 100 VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVP---E----IPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBS---S------HHHHHTEEEEEEEEEEE
T ss_pred EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccc---h----HHHHHHHhcCCCcEEEEEE
Confidence 44668889999999875 44 45666666443222456799999998772 1 2245667799999999965
Q ss_pred C
Q 041513 85 P 85 (294)
Q Consensus 85 p 85 (294)
.
T Consensus 173 ~ 173 (209)
T PF01135_consen 173 G 173 (209)
T ss_dssp S
T ss_pred c
Confidence 4
No 163
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=91.76 E-value=0.25 Score=42.29 Aligned_cols=71 Identities=7% Similarity=-0.101 Sum_probs=49.4
Q ss_pred eeccCCCcHHHHHHHHHcC---CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhc--cCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRV--LRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RV--LKPGG~~vis 83 (294)
.+...|+++.|++.++++. ..+.+..+|+..+++++..||.|++..-+ |.. ...+..+.+- +.++|.|++-
T Consensus 37 ~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 37 RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 4567799999999998863 24567778899999988889999887544 432 2344444432 4477887764
No 164
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=91.48 E-value=0.23 Score=44.14 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=47.8
Q ss_pred eeccCCCcHHHHHHHHH----cCC-CcEEEEccCCC-C--CCCCCcccEEEecCcCcccccC--------hHHHHHHHHh
Q 041513 9 SFAPLDVHEAQVQFALE----RGL-PAMVGLLSTYQ-L--PYPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDR 72 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~e----rgv-~~~~~v~d~~~-L--Pfpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~R 72 (294)
.+.+.|++...+..|.+ +++ ++.+..+++.. + -++++++|.|+..+-= +|... ...++.++.|
T Consensus 43 n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD-PWpK~rH~krRl~~~~fl~~~~~ 121 (195)
T PF02390_consen 43 NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD-PWPKKRHHKRRLVNPEFLELLAR 121 (195)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHHHHH
T ss_pred CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC-CCcccchhhhhcCCchHHHHHHH
Confidence 34455666666666544 366 45555666665 3 3568999999987655 55431 1259999999
Q ss_pred ccCCCcEEEEEc
Q 041513 73 VLRPGGYWVVSG 84 (294)
Q Consensus 73 VLKPGG~~vis~ 84 (294)
+|+|||.|.+.+
T Consensus 122 ~L~~gG~l~~~T 133 (195)
T PF02390_consen 122 VLKPGGELYFAT 133 (195)
T ss_dssp HEEEEEEEEEEE
T ss_pred HcCCCCEEEEEe
Confidence 999999999976
No 165
>PRK11524 putative methyltransferase; Provisional
Probab=91.46 E-value=0.13 Score=48.01 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=35.2
Q ss_pred EEEEccCCCC--CCCCCcccEEEec--CcC-cc-------cc-----cChHHHHHHHHhccCCCcEEEEEcC
Q 041513 31 MVGLLSTYQL--PYPSRSFDVAHCS--RCL-VP-------WT-----SYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 31 ~~~v~d~~~L--Pfpd~sFD~V~~s--~~l-~h-------~~-----~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
.+..+|.... .+++++||+|++. +.+ .. |. +-....+.|+.|+|||||.|++...
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3444553332 4678999999984 221 00 10 0113588999999999999998643
No 166
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=90.42 E-value=1.1 Score=41.42 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=60.7
Q ss_pred CCCcHHHHHHHHHc----CC--CcEEEEccCCCCCCC---CCcccEEEecCcCcccccChHHHHHHHHhcc-CCCcEEEE
Q 041513 13 LDVHEAQVQFALER----GL--PAMVGLLSTYQLPYP---SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVL-RPGGYWVV 82 (294)
Q Consensus 13 ~D~S~~mlq~A~er----gv--~~~~~v~d~~~LPfp---d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVL-KPGG~~vi 82 (294)
.|.+++.++.|++. |+ .+.+...|...-.|+ ++.||.|+.= .++|-.++..+.++| ||||++..
T Consensus 71 ~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLD------lp~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 71 YEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLD------LPDPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp EESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEE------SSSGGGGHHHHHHHE-EEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEe------CCCHHHHHHHHHHHHhcCCceEEE
Confidence 38899999999864 44 356667776554453 3679999743 234558999999999 89999999
Q ss_pred EcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513 83 SGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123 (294)
Q Consensus 83 s~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~ 123 (294)
-.|- ++|.++.++.|.+ ..|..+.
T Consensus 145 fsP~----------------ieQv~~~~~~L~~-~gf~~i~ 168 (247)
T PF08704_consen 145 FSPC----------------IEQVQKTVEALRE-HGFTDIE 168 (247)
T ss_dssp EESS----------------HHHHHHHHHHHHH-TTEEEEE
T ss_pred ECCC----------------HHHHHHHHHHHHH-CCCeeeE
Confidence 8873 3566777776665 3576653
No 167
>PRK00536 speE spermidine synthase; Provisional
Probab=90.22 E-value=2.1 Score=40.08 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=44.5
Q ss_pred eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513 9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY 79 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~ 79 (294)
.+.-.|+.+++++.|++-- ..+.+.. .. ..-..++||+|++-... +..+.+.+.|.|+|||.
T Consensus 96 ~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVIIvDs~~------~~~fy~~~~~~L~~~Gi 166 (262)
T PRK00536 96 HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLIICLQEP------DIHKIDGLKRMLKEDGV 166 (262)
T ss_pred eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEEEEcCCC------ChHHHHHHHHhcCCCcE
Confidence 4555688999999998831 1122221 11 11124789999966432 24788999999999999
Q ss_pred EEEEc
Q 041513 80 WVVSG 84 (294)
Q Consensus 80 ~vis~ 84 (294)
++.-.
T Consensus 167 ~v~Qs 171 (262)
T PRK00536 167 FISVA 171 (262)
T ss_pred EEECC
Confidence 99944
No 168
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.11 E-value=0.1 Score=42.65 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=26.6
Q ss_pred cccEEEecCcC--cccc--cC-hHHHHHHHHhccCCCcEEEEEcC
Q 041513 46 SFDVAHCSRCL--VPWT--SY-DGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 46 sFD~V~~s~~l--~h~~--~d-~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
.||+|+|-.+- +|.. ++ ...+++.+.+.|+|||+|++-..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 38999987654 2322 22 22489999999999999999653
No 169
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=89.81 E-value=0.49 Score=45.54 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=52.1
Q ss_pred CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513 44 SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123 (294)
Q Consensus 44 d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~ 123 (294)
.++||+|+.++-+ .-..+.-..+.-|..+|||||+++=.+|-.+--....|- ..+-.++-..+.|..+++.++|+.+.
T Consensus 257 ~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 257 AGSYDVVVTCFFI-DTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CCccceEEEEEEe-echHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEE
Confidence 3579999877444 333445579999999999999998888743311111111 01112333456677889999999988
Q ss_pred cc
Q 041513 124 ER 125 (294)
Q Consensus 124 ~~ 125 (294)
++
T Consensus 335 e~ 336 (369)
T KOG2798|consen 335 ER 336 (369)
T ss_pred ee
Confidence 76
No 170
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=89.77 E-value=2.7 Score=37.47 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=47.9
Q ss_pred eccCCCcHHHHHHHHHc----CCCcE-EEEcc-CCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 10 FAPLDVHEAQVQFALER----GLPAM-VGLLS-TYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv~~~-~~v~d-~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
+...|-++++++..+++ +++.. +..++ .+.|+=.+ +||.|+..... + ....|..+...|||||+++..
T Consensus 61 v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg~-~----i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 61 VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGGG-N----IEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCCC-C----HHHHHHHHHHHcCcCCeEEEE
Confidence 44557777887776543 56543 33344 33444222 89999998884 3 348999999999999999997
Q ss_pred c
Q 041513 84 G 84 (294)
Q Consensus 84 ~ 84 (294)
.
T Consensus 135 a 135 (187)
T COG2242 135 A 135 (187)
T ss_pred e
Confidence 6
No 171
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=89.60 E-value=2.5 Score=40.32 Aligned_cols=113 Identities=24% Similarity=0.340 Sum_probs=71.5
Q ss_pred eeccCCCcHHHHHHHH----HcCCC--cEEEEccCC---CCCCCCCcccEEEecCcCcccccCh--HHHHHHHHhccCCC
Q 041513 9 SFAPLDVHEAQVQFAL----ERGLP--AMVGLLSTY---QLPYPSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRPG 77 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~----ergv~--~~~~v~d~~---~LPfpd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKPG 77 (294)
++--.|.|+.-|+..+ ++|+. +.|...|+- .+.--+-..++++.+..+.-+.++. ...|.-+.+.|.||
T Consensus 163 ~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 163 SILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 5555699998888765 46764 256666532 2222244579999998885555543 24788999999999
Q ss_pred cEEEEEcCC---CC------ccccC--CCcccChHHHHHHHHHHHHHHHhhceEeeecc
Q 041513 78 GYWVVSGPP---IS------WKTSY--RGWERDAKDLQKEQISLENLATRLCWKKIAER 125 (294)
Q Consensus 78 G~~vis~pp---~~------~~~~~--~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~ 125 (294)
|++|.+..| .. ..+|. +.|.=- ...|.+|..|...-+++++.+.
T Consensus 243 G~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 243 GYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred cEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHHcCCchhhhe
Confidence 999999843 21 11222 235210 1235677888777777766553
No 172
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=89.59 E-value=1.1 Score=41.76 Aligned_cols=43 Identities=26% Similarity=0.528 Sum_probs=30.8
Q ss_pred CCCCcccEEEecCc--Ccc--cccCh-HHHHHHHHhccCCCcEEEEEc
Q 041513 42 YPSRSFDVAHCSRC--LVP--WTSYD-GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 42 fpd~sFD~V~~s~~--l~h--~~~d~-~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+....||+|+|-.. .+| |.++. ..+|+.+.|.|.|||+|++--
T Consensus 162 ~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 162 MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 45678999998532 123 34443 359999999999999998853
No 173
>PLN02823 spermine synthase
Probab=89.06 E-value=0.78 Score=44.36 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=48.7
Q ss_pred eeccCCCcHHHHHHHHHcC---------CCcEEEEccCC-CCCCCCCcccEEEecCcCccccc------ChHHHHH-HHH
Q 041513 9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTY-QLPYPSRSFDVAHCSRCLVPWTS------YDGLYLM-EID 71 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~-~LPfpd~sFD~V~~s~~l~h~~~------d~~~~L~-Ei~ 71 (294)
.+.-.|+.+++++.|++.- ..+.+...|+. -+.-.++.||+|++-..- ++.. ....+++ .+.
T Consensus 129 ~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~d-p~~~~~~~~Lyt~eF~~~~~~ 207 (336)
T PLN02823 129 KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLAD-PVEGGPCYQLYTKSFYERIVK 207 (336)
T ss_pred eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCC-ccccCcchhhccHHHHHHHHH
Confidence 3445699999999998742 12444555533 334456789999976321 2111 1225777 899
Q ss_pred hccCCCcEEEEEc
Q 041513 72 RVLRPGGYWVVSG 84 (294)
Q Consensus 72 RVLKPGG~~vis~ 84 (294)
+.|+|||.+++-.
T Consensus 208 ~~L~p~Gvlv~q~ 220 (336)
T PLN02823 208 PKLNPGGIFVTQA 220 (336)
T ss_pred HhcCCCcEEEEec
Confidence 9999999998754
No 174
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=88.70 E-value=2.6 Score=38.55 Aligned_cols=105 Identities=16% Similarity=0.068 Sum_probs=59.6
Q ss_pred eeccCCCcHHHHHHHHHcCCCcE-EEEccCCC-----CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALERGLPAM-VGLLSTYQ-----LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~ergv~~~-~~v~d~~~-----LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+.+.|++.+|+....+....+. +...+.+. ++..-..||++++|.++ .|..+.+.|+| |.+++
T Consensus 100 ~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 100 EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTL 169 (228)
T ss_pred EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEE
Confidence 46677999988887555443322 22223332 22222467877777654 47889999999 88888
Q ss_pred EcCCCCcccc----CCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513 83 SGPPISWKTS----YRGWERDAKDLQKEQISLENLATRLCWKKIA 123 (294)
Q Consensus 83 s~pp~~~~~~----~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~ 123 (294)
...|..-..+ ..|-.++++...+....+...+....|+...
T Consensus 170 L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 170 LFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred EcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 7755432211 1244444444344444444455556665544
No 175
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=88.56 E-value=1.1 Score=43.41 Aligned_cols=45 Identities=27% Similarity=0.323 Sum_probs=37.2
Q ss_pred CCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCCCcEEEEEcC
Q 041513 37 TYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 37 ~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKPGG~~vis~p 85 (294)
.+.+|-. |+|++-+++|||.++.. ++|+-+..-|+|||.+++.+.
T Consensus 231 fq~~P~~----daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 231 FQDTPKG----DAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cccCCCc----CeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4445544 39999999999987654 699999999999999999874
No 176
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=88.41 E-value=1.1 Score=42.20 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=48.1
Q ss_pred eeeccCCCcHHHHHHHHH--c-----CCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEE
Q 041513 8 MSFAPLDVHEAQVQFALE--R-----GLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~e--r-----gv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~ 80 (294)
..|..+|++++.++.|++ + +-...+..+|....+..-..||+|+.+....--..+...+|..+.+.++||..+
T Consensus 147 ~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l 226 (276)
T PF03059_consen 147 ARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARL 226 (276)
T ss_dssp -EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEE
T ss_pred CeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEE
Confidence 456778999999999976 2 234566667776676666799999977555222235568999999999999999
Q ss_pred EEE
Q 041513 81 VVS 83 (294)
Q Consensus 81 vis 83 (294)
++-
T Consensus 227 ~~R 229 (276)
T PF03059_consen 227 VVR 229 (276)
T ss_dssp EEE
T ss_pred EEe
Confidence 885
No 177
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=88.08 E-value=0.56 Score=46.27 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=48.1
Q ss_pred eeccCCCcHHHHHHHHHc----CCC---cEEEEccCCCC----CCCCCcccEEEecCcCcccccC----------hHHHH
Q 041513 9 SFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQL----PYPSRSFDVAHCSRCLVPWTSY----------DGLYL 67 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~L----Pfpd~sFD~V~~s~~l~h~~~d----------~~~~L 67 (294)
.+...|+|+.+++.|++. ++. +.+..+|+... .-..++||+|++.-=. +... -..++
T Consensus 245 ~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~--f~~~k~~l~~~~~~y~~l~ 322 (396)
T PRK15128 245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK--FVENKSQLMGACRGYKDIN 322 (396)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCC--CCCChHHHHHHHHHHHHHH
Confidence 456679999999999874 442 45666675432 1135689999976211 1111 11344
Q ss_pred HHHHhccCCCcEEEEEc
Q 041513 68 MEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 68 ~Ei~RVLKPGG~~vis~ 84 (294)
....++|+|||.|+++.
T Consensus 323 ~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 323 MLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHcCCCeEEEEEe
Confidence 56789999999999865
No 178
>PLN02476 O-methyltransferase
Probab=87.20 E-value=0.7 Score=43.58 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=46.5
Q ss_pred eccCCCcHHHHHHHHHc----CCC--cEEEEccC-CCCC-C----CCCcccEEEecCcCcccccChHHHHHHHHhccCCC
Q 041513 10 FAPLDVHEAQVQFALER----GLP--AMVGLLST-YQLP-Y----PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPG 77 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv~--~~~~v~d~-~~LP-f----pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPG 77 (294)
+...|.+++.++.|++. |+. +.+..+++ +.|+ + .+++||+|+.-.- ...-..++..+.+.||||
T Consensus 146 V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~----K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 146 LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD----KRMYQDYFELLLQLVRVG 221 (278)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC----HHHHHHHHHHHHHhcCCC
Confidence 44558888888888753 553 55555553 2232 1 2468999986532 222336899999999999
Q ss_pred cEEEEE
Q 041513 78 GYWVVS 83 (294)
Q Consensus 78 G~~vis 83 (294)
|.+++-
T Consensus 222 GvIV~D 227 (278)
T PLN02476 222 GVIVMD 227 (278)
T ss_pred cEEEEe
Confidence 998874
No 179
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=86.20 E-value=0.72 Score=41.74 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=31.9
Q ss_pred CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513 43 PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 43 pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
+..++|.++...-+ | ......+.+++++.|||||.+++..|-
T Consensus 127 ~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 127 PTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred ccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 45566666655555 4 445568999999999999999998873
No 180
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.83 E-value=2.2 Score=38.66 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=45.2
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+...|..++..++|+++ |+ ++.+.+.| ...-++. ..||.|++..+. .- -| ..+.+-|||||++++
T Consensus 96 ~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD-G~~G~~~~aPyD~I~Vtaaa-~~--vP----~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 96 RVVSIERIEELAEQARRNLETLGYENVTVRHGD-GSKGWPEEAPYDRIIVTAAA-PE--VP----EALLDQLKPGGRLVI 167 (209)
T ss_pred eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC-cccCCCCCCCcCEEEEeecc-CC--CC----HHHHHhcccCCEEEE
Confidence 344457778889999764 55 44455555 3344544 789999998887 22 23 234567999999999
Q ss_pred Ec
Q 041513 83 SG 84 (294)
Q Consensus 83 s~ 84 (294)
-.
T Consensus 168 Pv 169 (209)
T COG2518 168 PV 169 (209)
T ss_pred EE
Confidence 55
No 181
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=85.30 E-value=1.8 Score=42.80 Aligned_cols=75 Identities=20% Similarity=0.124 Sum_probs=50.8
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC----CCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ----LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY 79 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~----LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~ 79 (294)
.+.+.|+++.|++.|+++ ++ .+.+..+|+.. +++.+++||+|++.--- ..-...++.++.+ |+|+|.
T Consensus 316 ~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr---~G~~~~~l~~l~~-l~~~~i 391 (431)
T TIGR00479 316 SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR---KGCAAEVLRTIIE-LKPERI 391 (431)
T ss_pred EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC---CCCCHHHHHHHHh-cCCCEE
Confidence 467789999999999874 34 45666676543 34556789999864322 1112356666665 899999
Q ss_pred EEEEcCCC
Q 041513 80 WVVSGPPI 87 (294)
Q Consensus 80 ~vis~pp~ 87 (294)
++++..|.
T Consensus 392 vyvsc~p~ 399 (431)
T TIGR00479 392 VYVSCNPA 399 (431)
T ss_pred EEEcCCHH
Confidence 99988654
No 182
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=85.17 E-value=1.9 Score=40.83 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=51.3
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCCCC-CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQLPY-PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~LPf-pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+.+.|.++.|++.|++. ++ .+.+.++|+..+.. .++.||+|++.-=. . .....+.+...-++|++.+++
T Consensus 197 ~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr---~-G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 197 QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR---R-GIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC---C-CccHHHHHHHHHcCCCeEEEE
Confidence 567889999999999764 45 36677777665432 34679999876211 1 111234344455789999999
Q ss_pred EcCCCCc
Q 041513 83 SGPPISW 89 (294)
Q Consensus 83 s~pp~~~ 89 (294)
|..|...
T Consensus 273 sc~p~t~ 279 (315)
T PRK03522 273 SCNAQTM 279 (315)
T ss_pred ECCcccc
Confidence 9977654
No 183
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=84.55 E-value=2.1 Score=41.14 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=50.2
Q ss_pred eeeccCCCcHHHHHHHHHcC----CC-cEE--EEccC----CCCCC--CCCcccEEEecC-cCcccccCh-HHHHHHHHh
Q 041513 8 MSFAPLDVHEAQVQFALERG----LP-AMV--GLLST----YQLPY--PSRSFDVAHCSR-CLVPWTSYD-GLYLMEIDR 72 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~erg----v~-~~~--~v~d~----~~LPf--pd~sFD~V~~s~-~l~h~~~d~-~~~L~Ei~R 72 (294)
....|+|+|+++|+.+.++- .| +.+ .+++- ..+|- ......+++... ++.++.++. ..+|+++.+
T Consensus 105 ~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 105 VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 45789999999999997642 23 222 23331 11321 223466776554 676654332 258899999
Q ss_pred -ccCCCcEEEEEc
Q 041513 73 -VLRPGGYWVVSG 84 (294)
Q Consensus 73 -VLKPGG~~vis~ 84 (294)
.|+|||.|++..
T Consensus 185 ~~l~~~d~lLiG~ 197 (319)
T TIGR03439 185 TALSPSDSFLIGL 197 (319)
T ss_pred hhCCCCCEEEEec
Confidence 999999999976
No 184
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.17 E-value=1.7 Score=37.62 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=19.9
Q ss_pred hHHHHHHHHhccCCCcEEEEEcCC
Q 041513 63 DGLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 63 ~~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
....+.|+.|+|||||.+++....
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHhhcCCCeeEEEEecc
Confidence 346899999999999999998753
No 185
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.33 E-value=3.3 Score=37.88 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=49.3
Q ss_pred ccCCCcHHHHHHHHHcC---C------------CcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccC
Q 041513 11 APLDVHEAQVQFALERG---L------------PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLR 75 (294)
Q Consensus 11 ap~D~S~~mlq~A~erg---v------------~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLK 75 (294)
.++|..++.++.++++- + ...+.+.|....--+.+.||.|||.... ....+++...|+
T Consensus 112 ~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~ 184 (237)
T KOG1661|consen 112 HGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLK 184 (237)
T ss_pred cchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhc
Confidence 56678888888887641 1 2445566777666678889999998544 257788888999
Q ss_pred CCcEEEEEc
Q 041513 76 PGGYWVVSG 84 (294)
Q Consensus 76 PGG~~vis~ 84 (294)
|||.+++-.
T Consensus 185 ~gGrllip~ 193 (237)
T KOG1661|consen 185 PGGRLLIPV 193 (237)
T ss_pred cCCeEEEee
Confidence 999999854
No 186
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=82.21 E-value=4.2 Score=34.61 Aligned_cols=97 Identities=23% Similarity=0.206 Sum_probs=55.9
Q ss_pred ccCCCcHHHHHHHHHc----CC--CcEEEEccCCCCC--CCCCcccEEEecCcCcccccC-----h---HHHHHHHHhcc
Q 041513 11 APLDVHEAQVQFALER----GL--PAMVGLLSTYQLP--YPSRSFDVAHCSRCLVPWTSY-----D---GLYLMEIDRVL 74 (294)
Q Consensus 11 ap~D~S~~mlq~A~er----gv--~~~~~v~d~~~LP--fpd~sFD~V~~s~~l~h~~~d-----~---~~~L~Ei~RVL 74 (294)
.+-|+-++.|+..++| ++ .+.+...+-+.+. .+.+.+|+|+.+...-+-.+. + -.+++.+.++|
T Consensus 3 yaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL 82 (140)
T PF06962_consen 3 YAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELL 82 (140)
T ss_dssp EEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHE
T ss_pred EEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhh
Confidence 3458888899888775 33 3555555433443 233589999988765343321 1 24999999999
Q ss_pred CCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhce
Q 041513 75 RPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCW 119 (294)
Q Consensus 75 KPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW 119 (294)
+|||.+++..-|= .+.-+++.+++++.++.+.-
T Consensus 83 ~~gG~i~iv~Y~G------------H~gG~eE~~av~~~~~~L~~ 115 (140)
T PF06962_consen 83 KPGGIITIVVYPG------------HPGGKEESEAVEEFLASLDQ 115 (140)
T ss_dssp EEEEEEEEEE--S------------TCHHHHHHHHHHHHHHTS-T
T ss_pred ccCCEEEEEEeCC------------CCCCHHHHHHHHHHHHhCCc
Confidence 9999999986210 01113455667767666543
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=82.16 E-value=1.9 Score=43.92 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=47.1
Q ss_pred cCCCcHHHHHHH----HHcCCC-cEEEEccCCCC--CCCCCcccEEEecCcCcccccC--------hHHHHHHHHhccCC
Q 041513 12 PLDVHEAQVQFA----LERGLP-AMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSY--------DGLYLMEIDRVLRP 76 (294)
Q Consensus 12 p~D~S~~mlq~A----~ergv~-~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d--------~~~~L~Ei~RVLKP 76 (294)
+.|++..-+..| .+.++. +.+...++..+ -|+++++|.|+..+-= +|... ...++.++.|+|||
T Consensus 376 GiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPD-PWpKkrh~krRl~~~~fl~~~~~~Lk~ 454 (506)
T PRK01544 376 GVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPD-PWIKNKQKKKRIFNKERLKILQDKLKD 454 (506)
T ss_pred EEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCC-CCCCCCCccccccCHHHHHHHHHhcCC
Confidence 334444444443 344654 33333343312 3789999999988776 66432 12599999999999
Q ss_pred CcEEEEEcC
Q 041513 77 GGYWVVSGP 85 (294)
Q Consensus 77 GG~~vis~p 85 (294)
||.+.+.+-
T Consensus 455 gG~i~~~TD 463 (506)
T PRK01544 455 NGNLVFASD 463 (506)
T ss_pred CCEEEEEcC
Confidence 999999763
No 188
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=81.88 E-value=0.87 Score=45.01 Aligned_cols=77 Identities=19% Similarity=0.110 Sum_probs=50.8
Q ss_pred eeccCCCcHHHHHHHHHc----CC---CcEEEEccC-CCCCC---CCCcccEEEec---CcCc-----ccccChHHHHHH
Q 041513 9 SFAPLDVHEAQVQFALER----GL---PAMVGLLST-YQLPY---PSRSFDVAHCS---RCLV-----PWTSYDGLYLME 69 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~-~~LPf---pd~sFD~V~~s---~~l~-----h~~~d~~~~L~E 69 (294)
++...|.|...|+.|+++ |+ .+.+.++|+ +-|.. ....||+|+.- ++-. ....+-..++.+
T Consensus 242 ~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~ 321 (393)
T COG1092 242 EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDL 321 (393)
T ss_pred ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHH
Confidence 445669999999999885 44 245666662 23332 23489999862 2210 111222358889
Q ss_pred HHhccCCCcEEEEEcC
Q 041513 70 IDRVLRPGGYWVVSGP 85 (294)
Q Consensus 70 i~RVLKPGG~~vis~p 85 (294)
..++|+|||.++++..
T Consensus 322 ~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 322 ALRLLAPGGTLVTSSC 337 (393)
T ss_pred HHHHcCCCCEEEEEec
Confidence 9999999999999874
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=81.78 E-value=1.9 Score=39.86 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=43.4
Q ss_pred ccCCCcHHHHHHHHHc----CC--CcEEEEccC-CCCCC------CCCcccEEEecCcCcccccChHHHHHHHHhccCCC
Q 041513 11 APLDVHEAQVQFALER----GL--PAMVGLLST-YQLPY------PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPG 77 (294)
Q Consensus 11 ap~D~S~~mlq~A~er----gv--~~~~~v~d~-~~LPf------pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPG 77 (294)
.-.|..++..+.|++. |+ .+.+..+++ +-|+- ..++||+|+.-.- ...-...+..+.+.|+||
T Consensus 108 ~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad----K~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 108 LAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD----KDNYINYHKRLIDLVKVG 183 (247)
T ss_pred EEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC----HHHhHHHHHHHHHhcCCC
Confidence 3346777888888653 54 345555553 22221 1368999986532 222336888889999999
Q ss_pred cEEEE
Q 041513 78 GYWVV 82 (294)
Q Consensus 78 G~~vi 82 (294)
|.+++
T Consensus 184 Gviv~ 188 (247)
T PLN02589 184 GVIGY 188 (247)
T ss_pred eEEEE
Confidence 99877
No 190
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=81.52 E-value=0.7 Score=42.27 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=50.3
Q ss_pred CCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCC-CcEEEEEc
Q 041513 13 LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRP-GGYWVVSG 84 (294)
Q Consensus 13 ~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKP-GG~~vis~ 84 (294)
.+.|..|..+.++++..+... .+-.+ .+-.||+|.|-..| .-..++..+|+.|+-||+| .|..|++-
T Consensus 140 TElS~tMr~rL~kk~ynVl~~-~ew~~---t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 140 TELSWTMRDRLKKKNYNVLTE-IEWLQ---TDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHhhHHHHHHHhhcCCceeee-hhhhh---cCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 388999999998887654332 12111 24459999998877 5566888999999999999 99988864
No 191
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=81.37 E-value=1.7 Score=37.61 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 43 PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 43 pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
....||+|+++.|++ .......++.-+.++|+|+|.++++.+
T Consensus 116 ~~~~~D~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 116 EPHSFDVILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp S-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccccCCEEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 456899999999994 455556899999999999999777764
No 192
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=78.78 E-value=3 Score=37.00 Aligned_cols=83 Identities=13% Similarity=-0.004 Sum_probs=56.8
Q ss_pred CCCceeeeeccCCCcHHHHHHHHHcCCCcEEEEccCCCC-----CCCCCcccEEEecCcCcccccCh-HHHHHHHHhccC
Q 041513 2 DYNILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQL-----PYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLR 75 (294)
Q Consensus 2 ~~~v~t~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~L-----Pfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLK 75 (294)
++++---++..++.|.+-+....++--...+..+|+..+ .+.+.-||.|+|..=+-.+.... -++|.++.--|+
T Consensus 68 ~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~ 147 (194)
T COG3963 68 SRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP 147 (194)
T ss_pred hcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC
Confidence 445555566667788888877777643344545554444 36788999999986554444332 258899999999
Q ss_pred CCcEEEEEc
Q 041513 76 PGGYWVVSG 84 (294)
Q Consensus 76 PGG~~vis~ 84 (294)
+||-++--.
T Consensus 148 ~gg~lvqft 156 (194)
T COG3963 148 AGGPLVQFT 156 (194)
T ss_pred CCCeEEEEE
Confidence 999988754
No 193
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=77.83 E-value=7.4 Score=34.36 Aligned_cols=69 Identities=23% Similarity=0.195 Sum_probs=45.8
Q ss_pred eccCCCcHHHHHHHH----HcCCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 10 FAPLDVHEAQVQFAL----ERGLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~----ergv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+.-.|....-+.+.+ +.+++ +......++. +.....||+|++-.+- ....++.-+.+.|++||++++.-
T Consensus 75 ~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~-----~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 75 VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA-----PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS-----SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 334466666665543 34665 5555555666 6678999999876544 44478888999999999988854
No 194
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=77.63 E-value=9.3 Score=35.83 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=46.2
Q ss_pred eeeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccc-----c-----Ch---------
Q 041513 8 MSFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWT-----S-----YD--------- 63 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~-----~-----d~--------- 63 (294)
..+.+.|+|+..++.|++. ++. ..+...+ ---++ .+.||+|+|+==.+.-. + +|
T Consensus 135 ~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d-lf~~~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d 212 (280)
T COG2890 135 AEVIAVDISPDALALARENAERNGLVRVLVVQSD-LFEPL-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD 212 (280)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee-ccccc-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc
Confidence 4677889999999999874 432 1222222 11123 23899999862111110 0 11
Q ss_pred -----HHHHHHHHhccCCCcEEEEEc
Q 041513 64 -----GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 64 -----~~~L~Ei~RVLKPGG~~vis~ 84 (294)
..++.++.+.|+|||.+++-.
T Consensus 213 Gl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 213 GLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred HHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 237788999999999998865
No 195
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=76.52 E-value=1.8 Score=38.94 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=45.5
Q ss_pred cCCCcHHHHHHHHH----cCC--CcEEEEccCCC-CC-----CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513 12 PLDVHEAQVQFALE----RGL--PAMVGLLSTYQ-LP-----YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY 79 (294)
Q Consensus 12 p~D~S~~mlq~A~e----rgv--~~~~~v~d~~~-LP-----fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~ 79 (294)
-.|.+++..+.|++ .|+ .+.+..+++.. |+ .+.+.||+|+.-.-= .+-..++..+.+.|+|||.
T Consensus 75 tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K----~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 75 TIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK----RNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp EEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG----GGHHHHHHHHHHHEEEEEE
T ss_pred EecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc----cchhhHHHHHhhhccCCeE
Confidence 34778888888865 244 35566665332 22 124689999866432 2333688999999999999
Q ss_pred EEEEc
Q 041513 80 WVVSG 84 (294)
Q Consensus 80 ~vis~ 84 (294)
+++-.
T Consensus 151 ii~DN 155 (205)
T PF01596_consen 151 IIADN 155 (205)
T ss_dssp EEEET
T ss_pred EEEcc
Confidence 98864
No 196
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=75.06 E-value=17 Score=35.24 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=47.1
Q ss_pred eccCCCcHHHHHHHHH----cCCCc-EEEEccCCCCC--CCC-CcccEEEe----cC--cCcc-----cccC--------
Q 041513 10 FAPLDVHEAQVQFALE----RGLPA-MVGLLSTYQLP--YPS-RSFDVAHC----SR--CLVP-----WTSY-------- 62 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~e----rgv~~-~~~v~d~~~LP--fpd-~sFD~V~~----s~--~l~h-----~~~d-------- 62 (294)
+.+.|.|+.-++..++ .|+.. .....|+..++ .+. ..||.|++ |. ++.. |...
T Consensus 185 V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~ 264 (355)
T COG0144 185 VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELA 264 (355)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHH
Confidence 4677898877776654 36653 44455655443 222 35999983 32 2200 1111
Q ss_pred --hHHHHHHHHhccCCCcEEEEEcC
Q 041513 63 --DGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 63 --~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
...+|....++|||||.++.|+=
T Consensus 265 ~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 265 KLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 22488899999999999999873
No 197
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=74.67 E-value=5.4 Score=39.18 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=49.9
Q ss_pred eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+...|+++..++.+++. ++. ..+...|+..+....+.||+|++- ++ ..+..++....+.+++||.++++
T Consensus 83 ~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD----P~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 83 KVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID----PF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC----CC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 466779999999999764 443 335556665432214679999864 22 23346888878889999999998
Q ss_pred cC
Q 041513 84 GP 85 (294)
Q Consensus 84 ~p 85 (294)
..
T Consensus 158 At 159 (382)
T PRK04338 158 AT 159 (382)
T ss_pred ec
Confidence 63
No 198
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=74.60 E-value=6.7 Score=37.29 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeee
Q 041513 44 SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIA 123 (294)
Q Consensus 44 d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~ 123 (294)
.+-||+|+.+....|...+ |+.++++|||.+++-..-.- -.-.+|.++..-+++.+|++..+|+...
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEtaKfm-------vdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVETAKFM-------VDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEcchhh-------eeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 5789999987766565432 38889999999999663110 0113567788888999999999887654
No 199
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=73.48 E-value=4.2 Score=40.17 Aligned_cols=20 Identities=45% Similarity=0.788 Sum_probs=18.1
Q ss_pred CCCCCcccEEEecCcCccccc
Q 041513 41 PYPSRSFDVAHCSRCLVPWTS 61 (294)
Q Consensus 41 Pfpd~sFD~V~~s~~l~h~~~ 61 (294)
-||++|.+++|++.++ ||..
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred ccCCCceEEEEeeccc-eecc
Confidence 4899999999999999 8964
No 200
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.53 E-value=4.4 Score=37.37 Aligned_cols=38 Identities=32% Similarity=0.332 Sum_probs=30.8
Q ss_pred CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 42 YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 42 fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+.++||+++.- ||-++-.....++.|.||+||.+++-
T Consensus 145 ~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 145 GESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 368999999854 56555447899999999999999984
No 201
>PLN02672 methionine S-methyltransferase
Probab=71.98 E-value=7.6 Score=43.25 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=48.3
Q ss_pred eeccCCCcHHHHHHHHHcC----C-----------------CcEEEEccCCCCCCCC--CcccEEEecCcCc--------
Q 041513 9 SFAPLDVHEAQVQFALERG----L-----------------PAMVGLLSTYQLPYPS--RSFDVAHCSRCLV-------- 57 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg----v-----------------~~~~~v~d~~~LPfpd--~sFD~V~~s~~l~-------- 57 (294)
.+.+.|+|+++++.|+++. + .+.+...|.... +++ ..||+|+++==.+
T Consensus 144 ~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~~~~~~~fDlIVSNPPYI~~~e~~~l 222 (1082)
T PLN02672 144 KVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-CRDNNIELDRIVGCIPQILNPNPEAM 222 (1082)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-ccccCCceEEEEECCCcCCCcchhhc
Confidence 4667799999999997642 1 245566664332 232 3699999863111
Q ss_pred ------c-----------cc--------cCh----HHHHHHHHhccCCCcEEEEEcC
Q 041513 58 ------P-----------WT--------SYD----GLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 58 ------h-----------~~--------~d~----~~~L~Ei~RVLKPGG~~vis~p 85 (294)
| +. ++. ..++.+..++|||||.+++-..
T Consensus 223 ~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 223 SKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred ChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 0 00 111 3477889999999999988654
No 202
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=71.53 E-value=4.2 Score=37.35 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=46.8
Q ss_pred eeccCCCcHHHHHHHHHcC---------CCcEEEEccCCC-CCCCCC-cccEEEecCcCcccccC----hHHHHHHHHhc
Q 041513 9 SFAPLDVHEAQVQFALERG---------LPAMVGLLSTYQ-LPYPSR-SFDVAHCSRCLVPWTSY----DGLYLMEIDRV 73 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg---------v~~~~~v~d~~~-LPfpd~-sFD~V~~s~~l~h~~~d----~~~~L~Ei~RV 73 (294)
++.-.|+.+.+++.|++-- -...+...|+.. +--..+ .||+|+.-..- ..... ...+++.+.|.
T Consensus 102 ~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~ 180 (246)
T PF01564_consen 102 SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRR 180 (246)
T ss_dssp EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHH
T ss_pred eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhh
Confidence 3445589999999998731 134555555322 222233 89999874332 21111 23799999999
Q ss_pred cCCCcEEEEEc
Q 041513 74 LRPGGYWVVSG 84 (294)
Q Consensus 74 LKPGG~~vis~ 84 (294)
|+|||.+++-.
T Consensus 181 L~~~Gv~v~~~ 191 (246)
T PF01564_consen 181 LKPDGVLVLQA 191 (246)
T ss_dssp EEEEEEEEEEE
T ss_pred cCCCcEEEEEc
Confidence 99999999865
No 203
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=71.16 E-value=5 Score=39.53 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=35.8
Q ss_pred CCCCcccEEEecCcCcccccCh--HHHHHHHHhccCCCcEEEEEc
Q 041513 42 YPSRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 42 fpd~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.++++||.++.+... .|.++. ...+++|.|+++|||++++-.
T Consensus 291 ~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 578999999999988 787654 358899999999999999943
No 204
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=71.02 E-value=7.2 Score=37.92 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=48.7
Q ss_pred eeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513 8 MSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
..+...|.|++-++.|++.|....+.-.+...+.--...||+|+..-. ...+....+.||+||.+++.+-|
T Consensus 191 a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~--------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 191 AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG--------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--------hhhHHHHHHHHhcCCEEEEECCC
Confidence 355667999999999999886544421222222211223999975532 26888999999999999999843
No 205
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=70.43 E-value=3.8 Score=37.81 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHcCC----CcEEEEcc-CCCC-CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 14 DVHEAQVQFALERGL----PAMVGLLS-TYQL-PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 14 D~S~~mlq~A~ergv----~~~~~v~d-~~~L-Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+.|+..++.-++-|- ++....+- ..-+ .++|++||.|+-- ++....++...+.+.+.|+|||+|.|-+..
T Consensus 131 E~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yD-Ty~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 131 EAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYD-TYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred ecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEee-chhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 567777877776552 22222221 1112 3679999999743 332334455578889999999999987754
No 206
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=69.87 E-value=3.6 Score=39.63 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=14.6
Q ss_pred CCCCCCCCcccEEEecCcCccccc
Q 041513 38 YQLPYPSRSFDVAHCSRCLVPWTS 61 (294)
Q Consensus 38 ~~LPfpd~sFD~V~~s~~l~h~~~ 61 (294)
..==||++|.|+++++.++ ||..
T Consensus 99 y~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 99 YGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp TS--S-TT-EEEEEEES-T-TB-S
T ss_pred hhccCCCCceEEEEEechh-hhcc
Confidence 3334899999999999999 8863
No 207
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=69.27 E-value=11 Score=35.63 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=46.6
Q ss_pred cCCCcHHHHHHHHHcC-C--------CcEEEEcc-CCCCCCCCCcccEEEecCcCccccc----ChHHHHHHHHhccCCC
Q 041513 12 PLDVHEAQVQFALERG-L--------PAMVGLLS-TYQLPYPSRSFDVAHCSRCLVPWTS----YDGLYLMEIDRVLRPG 77 (294)
Q Consensus 12 p~D~S~~mlq~A~erg-v--------~~~~~v~d-~~~LPfpd~sFD~V~~s~~l~h~~~----d~~~~L~Ei~RVLKPG 77 (294)
-.|+.++.++.|++.- . .+.+...| .+-+.-...+||+|++-..= +... ....+++.+.|.|+++
T Consensus 105 ~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~td-p~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 105 MVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTD-PVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred EEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCC-CCCcccccCCHHHHHHHHHhcCCC
Confidence 3488899999998852 1 12334444 33333233489999865433 2111 1247999999999999
Q ss_pred cEEEEEc
Q 041513 78 GYWVVSG 84 (294)
Q Consensus 78 G~~vis~ 84 (294)
|.++.-.
T Consensus 184 Gi~v~q~ 190 (282)
T COG0421 184 GIFVAQA 190 (282)
T ss_pred cEEEEec
Confidence 9999974
No 208
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=68.72 E-value=21 Score=35.28 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=53.6
Q ss_pred eccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecC--cCcccccC--hH----HHHHHHHhccC
Q 041513 10 FAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSR--CLVPWTSY--DG----LYLMEIDRVLR 75 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~--~l~h~~~d--~~----~~L~Ei~RVLK 75 (294)
+.+.|++..||+.|+.+ |+. +.|.++++..++=+-..+|+|+|.- .. -.... .+ .+.+++.|.++
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGe-Rlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGE-RLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcch-hcCChhhHHHHHHHHHHHHHHHhc
Confidence 56889999999999764 554 6778888887765448999999972 22 11111 11 24456678888
Q ss_pred CCcEEEEEcCC
Q 041513 76 PGGYWVVSGPP 86 (294)
Q Consensus 76 PGG~~vis~pp 86 (294)
--+.++++++.
T Consensus 336 ~ws~~v~tt~e 346 (381)
T COG0116 336 GWSRYVFTTSE 346 (381)
T ss_pred CCceEEEEccH
Confidence 88899998863
No 209
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=65.00 E-value=14 Score=36.04 Aligned_cols=77 Identities=8% Similarity=0.036 Sum_probs=49.5
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCC-CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQL-PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~L-Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+.+.|+++.+++.|+++ ++ .+.+..+++... +-..+.||+|++.==. ..-...++..+. -++|++.+++
T Consensus 257 ~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr---~G~~~~~l~~l~-~~~p~~ivyv 332 (374)
T TIGR02085 257 QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR---RGIGKELCDYLS-QMAPKFILYS 332 (374)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC---CCCcHHHHHHHH-hcCCCeEEEE
Confidence 566789999999999864 34 456666775443 2122469999875221 111224555554 4799999999
Q ss_pred EcCCCCc
Q 041513 83 SGPPISW 89 (294)
Q Consensus 83 s~pp~~~ 89 (294)
+..|..+
T Consensus 333 sc~p~Tl 339 (374)
T TIGR02085 333 SCNAQTM 339 (374)
T ss_pred EeCHHHH
Confidence 9876543
No 210
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=63.93 E-value=46 Score=28.74 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCcEEEEccCCCC----CCCCCcccEEEecCcCcccc-------c-------ChHHHHHHHHhccCCCcE
Q 041513 18 AQVQFALERGLPAMVGLLSTYQL----PYPSRSFDVAHCSRCLVPWT-------S-------YDGLYLMEIDRVLRPGGY 79 (294)
Q Consensus 18 ~mlq~A~ergv~~~~~v~d~~~L----Pfpd~sFD~V~~s~~l~h~~-------~-------d~~~~L~Ei~RVLKPGG~ 79 (294)
+-++..++.|+.+.+.+ |+..| .+..+.||.|+-.+= |.. . -...+++...++|+++|.
T Consensus 44 ~nl~~L~~~g~~V~~~V-Dat~l~~~~~~~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~ 120 (166)
T PF10354_consen 44 ENLEELRELGVTVLHGV-DATKLHKHFRLKNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGE 120 (166)
T ss_pred HHHHHHhhcCCccccCC-CCCcccccccccCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 44444456676665543 44444 346799999986642 222 0 012378899999999999
Q ss_pred EEEEc
Q 041513 80 WVVSG 84 (294)
Q Consensus 80 ~vis~ 84 (294)
+.++.
T Consensus 121 IhVTl 125 (166)
T PF10354_consen 121 IHVTL 125 (166)
T ss_pred EEEEe
Confidence 99986
No 211
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=63.44 E-value=24 Score=37.40 Aligned_cols=76 Identities=12% Similarity=-0.042 Sum_probs=49.1
Q ss_pred eeccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCC--CCcccEEEecCcCc-cccc--ChHHH---HHHHHhcc
Q 041513 9 SFAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYP--SRSFDVAHCSRCLV-PWTS--YDGLY---LMEIDRVL 74 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfp--d~sFD~V~~s~~l~-h~~~--d~~~~---L~Ei~RVL 74 (294)
.+.+.|+++.+++.|+++ |+. +.+.+.|...++.+ .++||+|++.-=.. .... +...+ +.+..|.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 578899999999999875 553 55667787777655 35899999872111 1111 11123 33445555
Q ss_pred CCCcEEEEEc
Q 041513 75 RPGGYWVVSG 84 (294)
Q Consensus 75 KPGG~~vis~ 84 (294)
.||+.+++.+
T Consensus 338 ~~g~~~~llt 347 (702)
T PRK11783 338 FGGWNAALFS 347 (702)
T ss_pred CCCCeEEEEe
Confidence 5999887754
No 212
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=63.03 E-value=3.6 Score=38.95 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=46.2
Q ss_pred eeccCCCcHHHHHHHHHc----CC---CcEEEEccCCC-CC-C-CCCcccEEEec---CcCccc--ccChHHHHHHHHhc
Q 041513 9 SFAPLDVHEAQVQFALER----GL---PAMVGLLSTYQ-LP-Y-PSRSFDVAHCS---RCLVPW--TSYDGLYLMEIDRV 73 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv---~~~~~v~d~~~-LP-f-pd~sFD~V~~s---~~l~h~--~~d~~~~L~Ei~RV 73 (294)
++...|.|...++.|++. ++ ...+...|+.. +. + ..+.||+|++- +.-..+ ..+-..++..+.++
T Consensus 148 ~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~l 227 (286)
T PF10672_consen 148 EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKL 227 (286)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 355669999999999885 43 24555555322 21 1 24689999972 221111 12223578889999
Q ss_pred cCCCcEEEEEcC
Q 041513 74 LRPGGYWVVSGP 85 (294)
Q Consensus 74 LKPGG~~vis~p 85 (294)
|+|||.++++..
T Consensus 228 l~~gG~l~~~sc 239 (286)
T PF10672_consen 228 LKPGGLLLTCSC 239 (286)
T ss_dssp EEEEEEEEEEE-
T ss_pred cCCCCEEEEEcC
Confidence 999999998763
No 213
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=57.21 E-value=29 Score=30.95 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=45.5
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCC-CCCCCCcccEEEecCcCcccccChHHHHHHHHh--ccCCCcEE
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQ-LPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDR--VLRPGGYW 80 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~-LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~R--VLKPGG~~ 80 (294)
.+...|.++..++.|++. ++ .+.+...|... ++.....||+|++.==+.. .-...++..+.. +|+|+|.+
T Consensus 78 ~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv 155 (199)
T PRK10909 78 GATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALI 155 (199)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEE
Confidence 456679999999988763 33 35565666433 3333557999997633211 112234444443 47899988
Q ss_pred EEEcC
Q 041513 81 VVSGP 85 (294)
Q Consensus 81 vis~p 85 (294)
+++.+
T Consensus 156 ~ve~~ 160 (199)
T PRK10909 156 YVESE 160 (199)
T ss_pred EEEec
Confidence 88764
No 214
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=57.10 E-value=24 Score=32.84 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=43.8
Q ss_pred eeccCCCcHHHHHHHHHc--CCCc-EEE--Ecc--CCCCCCCCCcccEEEecCcCcccccCh-HHHHHHHHhccCCCcEE
Q 041513 9 SFAPLDVHEAQVQFALER--GLPA-MVG--LLS--TYQLPYPSRSFDVAHCSRCLVPWTSYD-GLYLMEIDRVLRPGGYW 80 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er--gv~~-~~~--v~d--~~~LPfpd~sFD~V~~s~~l~h~~~d~-~~~L~Ei~RVLKPGG~~ 80 (294)
.+...|.|+.|++.++.- ..+. ... ... .+..++... |+|+++++|....... ..+++.+.+.+.+ ++
T Consensus 60 ~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~L 135 (274)
T PF09243_consen 60 EYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD--DLVIASYVLNELPSAARAELVRSLWNKTAP--VL 135 (274)
T ss_pred eeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC--cEEEEehhhhcCCchHHHHHHHHHHHhccC--cE
Confidence 455679999999998763 2111 110 011 223344333 9999999996654411 1355555555544 99
Q ss_pred EEEcCCC
Q 041513 81 VVSGPPI 87 (294)
Q Consensus 81 vis~pp~ 87 (294)
+|.+|..
T Consensus 136 VlVEpGt 142 (274)
T PF09243_consen 136 VLVEPGT 142 (274)
T ss_pred EEEcCCC
Confidence 9988743
No 215
>PF14881 Tubulin_3: Tubulin domain
Probab=54.90 E-value=8.9 Score=33.75 Aligned_cols=61 Identities=25% Similarity=0.520 Sum_probs=36.0
Q ss_pred ccchhhhh---hHHHHHHHHHHHHHhhhcCCCCCcceeeccccCcchhHhhhc--------CCCc-eEEEecCCC
Q 041513 209 ITVKSFNE---DNQLWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALA--------KYPV-WVMNAVPFD 271 (294)
Q Consensus 209 ~~~~~f~~---D~~~W~~~v~~Y~~~~~~~~~~~~RNvmDMnA~~GGFAAAl~--------~~~v-WVMNVvP~~ 271 (294)
.-.+.|++ ......+.+..|-.-=..+. -+.=+.|+..|+||||+.++ +.++ |+.++-+..
T Consensus 45 ~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQ--GfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~ 117 (180)
T PF14881_consen 45 VGQELFKSLDYEEDFFDRDLRFFLEECDSLQ--GFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPS 117 (180)
T ss_pred chHHHHhhhhhhhHHHHHHHHHHHHHccccc--ceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcc
Confidence 33455554 23445555554433111121 34457899999999999996 3564 988775544
No 216
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=53.59 E-value=32 Score=32.28 Aligned_cols=68 Identities=21% Similarity=0.109 Sum_probs=42.2
Q ss_pred ccCCCcHHHHHHHHHcCCCcEEEEc--cCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 11 APLDVHEAQVQFALERGLPAMVGLL--STYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 11 ap~D~S~~mlq~A~ergv~~~~~v~--d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
...|.+++.++.|++.|....+... +...+.-..+.||+|+-+-. .+ ..+.+..+.||+||.+++.+.
T Consensus 198 i~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G------~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 198 VCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG------HP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC------CH-HHHHHHHHHhhcCCEEEEEcc
Confidence 3457788888889887754332111 11111111234898875422 12 578889999999999999873
No 217
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=52.50 E-value=26 Score=27.70 Aligned_cols=68 Identities=29% Similarity=0.321 Sum_probs=45.2
Q ss_pred eccCCCcHHHHHHHHHcCCCcEEEEccCC---CC--CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 10 FAPLDVHEAQVQFALERGLPAMVGLLSTY---QL--PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~---~L--Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+...|.++.-++.+++.|....+...+.. .+ ..+.+.+|+|+-+-. . ...+.+...+|+|||.+++.+
T Consensus 17 vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~-~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 17 VIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------S-GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp EEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------S-HHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC------c-HHHHHHHHHHhccCCEEEEEE
Confidence 44557888899999998844333211110 00 123457999974422 1 379999999999999999987
No 218
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=49.28 E-value=41 Score=34.20 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=47.4
Q ss_pred cCCCcHHHHHHHHH--cC---C--CcEEE-EccCCCCCCCCC-cccEEEecCcCcccccChH--HHHHHH-HhccCCCcE
Q 041513 12 PLDVHEAQVQFALE--RG---L--PAMVG-LLSTYQLPYPSR-SFDVAHCSRCLVPWTSYDG--LYLMEI-DRVLRPGGY 79 (294)
Q Consensus 12 p~D~S~~mlq~A~e--rg---v--~~~~~-v~d~~~LPfpd~-sFD~V~~s~~l~h~~~d~~--~~L~Ei-~RVLKPGG~ 79 (294)
-.|.|.+|+.++.. |+ + +..-. +.--+.+|.+.. .||+|+|++.++|...... ....++ .+..++||+
T Consensus 231 ~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~ 310 (491)
T KOG2539|consen 231 LVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYF 310 (491)
T ss_pred eeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCce
Confidence 35888888888754 22 1 11111 233567787654 4999999999966543321 233444 456788999
Q ss_pred EEEEcCCC
Q 041513 80 WVVSGPPI 87 (294)
Q Consensus 80 ~vis~pp~ 87 (294)
+++..+..
T Consensus 311 lViIe~g~ 318 (491)
T KOG2539|consen 311 LVIIEKGT 318 (491)
T ss_pred EEEEecCC
Confidence 99987644
No 219
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=48.44 E-value=43 Score=30.63 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 43 PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 43 pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+.+.+|+|+..... ...+.++.|.|++||.++..+
T Consensus 229 ~~~~~D~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 229 LGGGFDVIFDFVGT-------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred cCCCceEEEECCCC-------HHHHHHHHHHhhcCCEEEEEC
Confidence 45678988754221 268999999999999999875
No 220
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=47.31 E-value=29 Score=34.96 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=41.5
Q ss_pred eccCCCcHHHHHHH----HHcCC--CcEEEEccCCCCCCCCCcccEEEecCcCcccccC--hHHHHHHHHhccCCCcEEE
Q 041513 10 FAPLDVHEAQVQFA----LERGL--PAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSY--DGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 10 ~ap~D~S~~mlq~A----~ergv--~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d--~~~~L~Ei~RVLKPGG~~v 81 (294)
+...+-++..+... ++.+. .+.+...+++....|. .+|+|++=.. -.+..+ -...|.-..|.|||||.++
T Consensus 217 VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 217 VYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 33445554444333 23343 4667778888888766 8999996322 122222 2358899999999999876
No 221
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=46.50 E-value=35 Score=33.50 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=49.1
Q ss_pred eeccCCCcHHHHHHHHHc----CCC-cEEEEccCCCC-CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 9 SFAPLDVHEAQVQFALER----GLP-AMVGLLSTYQL-PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~-~~~~v~d~~~L-Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
.+...|+++..++.++++ ++. +.+...|+..+ ......||+|..-- + . .+..++..+.+.+++||.+.+
T Consensus 71 ~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f---G-s~~~fld~al~~~~~~glL~v 145 (374)
T TIGR00308 71 EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F---G-TPAPFVDSAIQASAERGLLLV 145 (374)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C---C-CcHHHHHHHHHhcccCCEEEE
Confidence 355679999999998764 333 44555564433 22246799997642 2 2 334799999999999999999
Q ss_pred Ec
Q 041513 83 SG 84 (294)
Q Consensus 83 s~ 84 (294)
+.
T Consensus 146 Ta 147 (374)
T TIGR00308 146 TA 147 (374)
T ss_pred Ee
Confidence 84
No 222
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=45.75 E-value=61 Score=31.09 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=43.8
Q ss_pred eccCCCcHHHHHHHHHc-CCCcEEEEccCCC-----C-CC-CCCcccEEEecCcC-------c-------ccccChHHHH
Q 041513 10 FAPLDVHEAQVQFALER-GLPAMVGLLSTYQ-----L-PY-PSRSFDVAHCSRCL-------V-------PWTSYDGLYL 67 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er-gv~~~~~v~d~~~-----L-Pf-pd~sFD~V~~s~~l-------~-------h~~~d~~~~L 67 (294)
+...|.++++++.+++. +. ........+ + .+ +...+|+|+-.-.- + +-..+....+
T Consensus 212 vi~~~~~~~~~~~~~~~~~~--~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
T cd08283 212 VIAIDRVPERLEMARSHLGA--ETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDAL 289 (386)
T ss_pred EEEEcCCHHHHHHHHHcCCc--EEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHH
Confidence 44557778888888877 33 211111110 1 12 23469999864211 0 0112334689
Q ss_pred HHHHhccCCCcEEEEEcC
Q 041513 68 MEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 68 ~Ei~RVLKPGG~~vis~p 85 (294)
.++.|.|+|+|.+++.+.
T Consensus 290 ~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 290 REAIQAVRKGGTVSIIGV 307 (386)
T ss_pred HHHHHHhccCCEEEEEcC
Confidence 999999999999999763
No 223
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=45.44 E-value=57 Score=31.27 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=48.7
Q ss_pred eeccCCCcHHHHHHHHHc----CCC----cEEE--Ecc-CCCCCCCCCcccEEEecCcCccccc------------Ch--
Q 041513 9 SFAPLDVHEAQVQFALER----GLP----AMVG--LLS-TYQLPYPSRSFDVAHCSRCLVPWTS------------YD-- 63 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv~----~~~~--v~d-~~~LPfpd~sFD~V~~s~~l~h~~~------------d~-- 63 (294)
.+..+|.|++.+..|.++ ++. +... ..+ ....+..++..|+++|+-=.+.-.+ +.
T Consensus 174 ~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lA 253 (328)
T KOG2904|consen 174 TVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLA 253 (328)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhh
Confidence 456789999999999874 221 2211 122 4455677899999998732211110 00
Q ss_pred -----------HHHHHHHHhccCCCcEEEEEcC
Q 041513 64 -----------GLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 64 -----------~~~L~Ei~RVLKPGG~~vis~p 85 (294)
-.++.-..|.|+|||.+.+...
T Consensus 254 LdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 254 LDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1145567899999999999763
No 224
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=43.40 E-value=46 Score=31.94 Aligned_cols=65 Identities=28% Similarity=0.261 Sum_probs=42.3
Q ss_pred CCCcHHHHHHHHHcC-CCcEEEEcc----CCCCCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 13 LDVHEAQVQFALERG-LPAMVGLLS----TYQLPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 13 ~D~S~~mlq~A~erg-v~~~~~v~d----~~~LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.|.+++-+++|++.+ ......... ...+.... .-||+|+=+-.. ..++.++.+++||||.+++.+
T Consensus 199 ~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~-------~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 199 VDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS-------PPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred eCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC-------HHHHHHHHHHhcCCCEEEEEe
Confidence 399999999999854 332221100 00111222 369999844332 259999999999999999977
No 225
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=43.12 E-value=33 Score=31.43 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=35.0
Q ss_pred eeccCCCcHHHHHHHHHcC---CCcEEEEccCCCCCCCCCcccEEEecCcC
Q 041513 9 SFAPLDVHEAQVQFALERG---LPAMVGLLSTYQLPYPSRSFDVAHCSRCL 56 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LPfpd~sFD~V~~s~~l 56 (294)
.+...|+++.|++.++++- -.+.+..+|+..+++++ ||.|+++.-.
T Consensus 53 ~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~NlPy 101 (258)
T PRK14896 53 KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVSNLPY 101 (258)
T ss_pred EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEEcCCc
Confidence 4566799999999998753 23566678888888764 8999988665
No 226
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=42.66 E-value=78 Score=32.48 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=46.9
Q ss_pred eccCCCcHHHHHHHHHcCCCcEEEEccC---------CCC----------CCCC--CcccEEEecCcCcccccChHHHHH
Q 041513 10 FAPLDVHEAQVQFALERGLPAMVGLLST---------YQL----------PYPS--RSFDVAHCSRCLVPWTSYDGLYLM 68 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~---------~~L----------Pfpd--~sFD~V~~s~~l~h~~~d~~~~L~ 68 (294)
+...|.+++-++.|++.|.......... ..+ .|.+ ..+|+|+.+-.. .-...+..+.+
T Consensus 191 V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~-pg~~aP~lit~ 269 (509)
T PRK09424 191 VRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALI-PGKPAPKLITA 269 (509)
T ss_pred EEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCC-CcccCcchHHH
Confidence 4556999999999998775422111100 001 0111 469999987655 33333423469
Q ss_pred HHHhccCCCcEEEEEc
Q 041513 69 EIDRVLRPGGYWVVSG 84 (294)
Q Consensus 69 Ei~RVLKPGG~~vis~ 84 (294)
|+.+.+||||.++..+
T Consensus 270 ~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 270 EMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHhcCCCCEEEEEc
Confidence 9999999999998876
No 227
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=41.22 E-value=43 Score=30.83 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCcEEEEccCCC-C---CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 17 EAQVQFALERGLPAMVGLLSTYQ-L---PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 17 ~~mlq~A~ergv~~~~~v~d~~~-L---Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
...+..|++|. ++.-...|+.. . .+ =..+|+|++--+- .+....++......||+||+|+++..
T Consensus 112 rdL~~la~~R~-NIiPIl~DAr~P~~Y~~l-v~~VDvI~~DVaQ---p~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 112 RDLLNLAKKRP-NIIPILEDARHPEKYRML-VEMVDVIFQDVAQ---PDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp HHHHHHHHHST-TEEEEES-TTSGGGGTTT-S--EEEEEEE-SS---TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhccCC-ceeeeeccCCChHHhhcc-cccccEEEecCCC---hHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 36778888874 33323344331 1 22 2478999876432 23444688888899999999999863
No 228
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=39.64 E-value=69 Score=29.19 Aligned_cols=51 Identities=31% Similarity=0.614 Sum_probs=36.2
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecccceeEeeCCCC
Q 041513 64 GLYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAERGPIAVWRKPTN 136 (294)
Q Consensus 64 ~~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~~~~~iw~Kp~~ 136 (294)
...+.|+.|+|+++|.+++..+... ...+....+.++|..... .+|.|+..
T Consensus 79 ~~~~~~~~rvl~~~~~~~v~~~~~~------------------~~~~~~~~~~~gf~~~~~----iiw~k~~~ 129 (302)
T COG0863 79 LQWLAEQKRVLKPGGSLYVIDPFSN------------------LARIEDIAKKLGFEILGK----IIWKKPSP 129 (302)
T ss_pred HHHHHHhhheecCCCEEEEECCchh------------------hhHHHHHHHhCCCeEeee----EEEeCCCC
Confidence 4678899999999999999876311 123444555577777665 78999854
No 229
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=38.82 E-value=46 Score=31.32 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=24.4
Q ss_pred EEEecCcCccccc--ChHHHHHHHHhccCCCcEEEEEc
Q 041513 49 VAHCSRCLVPWTS--YDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 49 ~V~~s~~l~h~~~--d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.|+...+|||..+ ++..+++.+...|-||.+|++|.
T Consensus 153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 4555667744433 46679999999999999999986
No 230
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=38.73 E-value=94 Score=22.29 Aligned_cols=62 Identities=13% Similarity=-0.003 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 17 EAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 17 ~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
.+.-+..+++|+.+.......+.++-.+.++ +++... + .+.+ ..-++++.+.++.||.++++
T Consensus 8 ~a~~~~L~~~g~~v~~~~~~~~~l~~~~~tl-l~i~~~-~-~~~~--~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 8 YALYQLLEEQGVKVERWRKPYEALEADDGTL-LVIGPD-L-RLSE--PEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHCCCeeEEecccHHHhCCCCCEE-EEEeCC-C-CCCc--hHHHHHHHHHHHcCCEEEEe
Confidence 3445556667776654333334444444444 333333 2 2222 26677888899999999986
No 231
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=37.89 E-value=76 Score=28.81 Aligned_cols=45 Identities=7% Similarity=-0.025 Sum_probs=31.9
Q ss_pred eccCCCcHHHHHHHHHcC---CCcEEEEccCCCCCCCCCccc---EEEecCcC
Q 041513 10 FAPLDVHEAQVQFALERG---LPAMVGLLSTYQLPYPSRSFD---VAHCSRCL 56 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~erg---v~~~~~v~d~~~LPfpd~sFD---~V~~s~~l 56 (294)
+...|+++.|++.++++. -.+.+..+|+..++++ .|| +|+++.-+
T Consensus 54 v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 54 VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCCh
Confidence 455699999999998752 2456667788888876 466 77666444
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=37.55 E-value=1.3e+02 Score=30.51 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=17.3
Q ss_pred eeeeeccCCCcHHHHHHHHHc
Q 041513 6 LTMSFAPLDVHEAQVQFALER 26 (294)
Q Consensus 6 ~t~s~ap~D~S~~mlq~A~er 26 (294)
+...+.+.|+++..++.|+.+
T Consensus 62 ~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 62 VELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred ceeeeeeechhHHHHHHHHHH
Confidence 356788899999999998764
No 233
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=37.10 E-value=70 Score=32.25 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=46.7
Q ss_pred eccCCCcHHHHHHHH----HcCCCcEEE-EccCCCCC---CCCCcccEEE----ecC--cCc-----ccc----------
Q 041513 10 FAPLDVHEAQVQFAL----ERGLPAMVG-LLSTYQLP---YPSRSFDVAH----CSR--CLV-----PWT---------- 60 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~----ergv~~~~~-v~d~~~LP---fpd~sFD~V~----~s~--~l~-----h~~---------- 60 (294)
|...|.+++-+.... +.|+...+. ..|...+| |+. +||-|. ||. ++. -+.
T Consensus 269 I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~ 347 (460)
T KOG1122|consen 269 IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYA 347 (460)
T ss_pred EEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhH
Confidence 334477776666544 346654443 34555554 555 899997 665 220 000
Q ss_pred cChHHHHHHHHhccCCCcEEEEEcCCC
Q 041513 61 SYDGLYLMEIDRVLRPGGYWVVSGPPI 87 (294)
Q Consensus 61 ~d~~~~L~Ei~RVLKPGG~~vis~pp~ 87 (294)
.-..++|......+||||+++.|+=.+
T Consensus 348 ~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 348 HLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred HHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 112347777788999999999998444
No 234
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=36.13 E-value=34 Score=31.67 Aligned_cols=46 Identities=2% Similarity=-0.148 Sum_probs=34.1
Q ss_pred eeccCCCcHHHHHHHHHcC--CCcEEEEccCCCCCCCCCcccEEEecC
Q 041513 9 SFAPLDVHEAQVQFALERG--LPAMVGLLSTYQLPYPSRSFDVAHCSR 54 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~~LPfpd~sFD~V~~s~ 54 (294)
.+...|++++|++.++++. ..+.+.++|+..+++++-.+|.|+++-
T Consensus 66 ~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 66 KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 4567799999999998753 346677788888887754457777763
No 235
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=34.83 E-value=58 Score=29.12 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=38.3
Q ss_pred cCCCcHHHHHHHHH----cCCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEE
Q 041513 12 PLDVHEAQVQFALE----RGLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWV 81 (294)
Q Consensus 12 p~D~S~~mlq~A~e----rgv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~v 81 (294)
..|+.+..++..++ .++. +....+|+..++- .+.||-|++..- .....+|.++.+++|+||.+-
T Consensus 130 A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 130 AVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred EecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEEE
Confidence 34777777776654 2443 4455677766654 899999987632 223368999999999999874
No 236
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=34.64 E-value=1.1e+02 Score=28.63 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=36.7
Q ss_pred CCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 13 LDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 13 ~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
.|.+++-++.|++.|....+ +... ...+.+|+++-..+. + ..+.+..+.|++||++++.+.
T Consensus 195 ~~~~~~~~~~a~~~Ga~~vi---~~~~--~~~~~~d~~i~~~~~------~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 195 MTRGAAARRLALALGAASAG---GAYD--TPPEPLDAAILFAPA------G-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EeCChHHHHHHHHhCCceec---cccc--cCcccceEEEECCCc------H-HHHHHHHHhhCCCcEEEEEec
Confidence 35556667777776654322 1111 112357876533221 2 578899999999999998763
No 237
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=34.24 E-value=46 Score=33.47 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=48.4
Q ss_pred eccCCCcHHHHHHHHH--cCCCcEEEEccCC-CC--CC---CCCcccEEEecCcCcccccChHHHHH---HHHhccCCCc
Q 041513 10 FAPLDVHEAQVQFALE--RGLPAMVGLLSTY-QL--PY---PSRSFDVAHCSRCLVPWTSYDGLYLM---EIDRVLRPGG 78 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~e--rgv~~~~~v~d~~-~L--Pf---pd~sFD~V~~s~~l~h~~~d~~~~L~---Ei~RVLKPGG 78 (294)
-||.|..+...+.|++ +|+.+.++++|.. .| .| -+-..|+.+.-..=.+-..+...+|+ -+.|+|-|||
T Consensus 202 aApldE~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgPFN~a~dRl~aFakaVa~sRIL~pGk 281 (505)
T PF10113_consen 202 AAPLDEMEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGPFNRAKDRLKAFAKAVAASRILVPGK 281 (505)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCCcccchhHHHHHHHHHHHheeeecCc
Confidence 4677888888888887 4688888887633 22 11 14557777655443243444445555 3689999999
Q ss_pred EEEEE
Q 041513 79 YWVVS 83 (294)
Q Consensus 79 ~~vis 83 (294)
.+.-.
T Consensus 282 VVaTN 286 (505)
T PF10113_consen 282 VVATN 286 (505)
T ss_pred EEecC
Confidence 87653
No 238
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=33.69 E-value=25 Score=31.49 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCCCCcceeeccccCcchhHhhhcC
Q 041513 214 FNEDNQLWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALAK 259 (294)
Q Consensus 214 f~~D~~~W~~~v~~Y~~~~~~~~~~~~RNvmDMnA~~GGFAAAl~~ 259 (294)
|..-....++|+.. .+..+ ..|+||-||.|.|+-.+.+
T Consensus 84 fs~rl~~Er~Ri~~------~v~~~--e~VlD~faGIG~f~l~~ak 121 (200)
T PF02475_consen 84 FSPRLSTERRRIAN------LVKPG--EVVLDMFAGIGPFSLPIAK 121 (200)
T ss_dssp --GGGHHHHHHHHT------C--TT---EEEETT-TTTTTHHHHHH
T ss_pred EccccHHHHHHHHh------cCCcc--eEEEEccCCccHHHHHHhh
Confidence 44444555566642 23333 5899999999999876654
No 239
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=33.63 E-value=23 Score=27.33 Aligned_cols=51 Identities=18% Similarity=0.006 Sum_probs=30.1
Q ss_pred cEEEEccCCC-C-CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 30 AMVGLLSTYQ-L-PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 30 ~~~~v~d~~~-L-Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
+.+...+... + .+++..||+++.=.. |-.+.....+..+.+.|+|||.+++
T Consensus 51 ~~~~~g~s~~~l~~~~~~~~dli~iDg~--H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 51 VEFIQGDSPDFLPSLPDGPIDLIFIDGD--HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEEEES-THHHHHHHHH--EEEEEEES-----HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEEEcCcHHHHHHcCCCCEEEEEECCC--CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4555554322 1 233688999986543 3333344688889999999999887
No 240
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.87 E-value=1.2e+02 Score=30.12 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=32.9
Q ss_pred CCCCCC-CCcccEEEecCcCcccccCh--HHHHHHHHhccCCCcEEEEEcCC
Q 041513 38 YQLPYP-SRSFDVAHCSRCLVPWTSYD--GLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 38 ~~LPfp-d~sFD~V~~s~~l~h~~~d~--~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
.+++++ ...|++|+...-|.|-.... ...+..+..++.|||.|+|+++.
T Consensus 176 dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 176 DRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 355665 45677777666554432211 12788889999999999999863
No 241
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=32.83 E-value=1.6e+02 Score=27.72 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=39.5
Q ss_pred ccCCCcHHHHHHHHHcCCCcEEEEccCCCC--CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 11 APLDVHEAQVQFALERGLPAMVGLLSTYQL--PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 11 ap~D~S~~mlq~A~ergv~~~~~v~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
...|.++.-++.|++.|... .....+.. ....+.||+|+-.-.- + ..+.+..++||+||.+++.+
T Consensus 203 ~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g~------~-~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 203 NRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATGV------P-PLAFEALPALAPNGVVILFG 269 (355)
T ss_pred ecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcCC------H-HHHHHHHHHccCCcEEEEEe
Confidence 33455777888888777532 11111110 0012458888754321 2 47889999999999998876
No 242
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=32.63 E-value=3.1e+02 Score=23.71 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=25.3
Q ss_pred CCC-CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCC
Q 041513 40 LPY-PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 40 LPf-pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
.|+ +.+..|+++|..-. . +.....-|||||++++..+.
T Consensus 60 ~~~~~~~~~D~lva~d~~--------~-~~~~~~~l~~gg~ii~ns~~ 98 (197)
T PRK06274 60 SPLIPEGQADLLLALEPA--------E-VARNLHFLKKGGKIIVNAYA 98 (197)
T ss_pred CCccCCCCCCEEEEcCHH--------H-HHHHHhhcCCCcEEEEECCC
Confidence 344 36789999865322 2 34455669999999988643
No 243
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=32.27 E-value=94 Score=26.75 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=26.5
Q ss_pred ccCCCC--CCCCCcccEEEecCcCcccccChHHHHHH--HHhccCCCcEEEEEc
Q 041513 35 LSTYQL--PYPSRSFDVAHCSRCLVPWTSYDGLYLME--IDRVLRPGGYWVVSG 84 (294)
Q Consensus 35 ~d~~~L--Pfpd~sFD~V~~s~~l~h~~~d~~~~L~E--i~RVLKPGG~~vis~ 84 (294)
.+.++. +.+-...|+++|..- .++.. ..+-|||||.+++..
T Consensus 53 is~~~i~~~s~~~~~D~lva~~~---------~~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 53 ISDRPIRVHSQIYEPDYVVVLDP---------TLLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred EcCccccCCCccCCCCEEEEcCH---------HHhCccchhhCcCCCeEEEEEC
Confidence 344444 445678899986532 23322 556799999999865
No 244
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=31.96 E-value=2.3e+02 Score=27.72 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=49.6
Q ss_pred ceeeeeccCCCcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 5 ILTMSFAPLDVHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 5 v~t~s~ap~D~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
-++..=|++-.++++++..+++|+...+.......-.|..-..|-|--...-..|..-+......+...=+.||+++-++
T Consensus 177 svAAPTAGLHFt~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH~MH~E~~~v~~eta~~i~~~k~~GgRIiaVG 256 (348)
T COG0809 177 SVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEHKMHSEYYEVPQETADAINAAKARGGRIIAVG 256 (348)
T ss_pred ccccCcCCCCCCHHHHHHHHHCCceEEEEEEEecccccccceeccccccccchhheecCHHHHHHHHHHHHcCCeEEEEc
Confidence 34556678899999999999999876654433333334333333332221111233445566666666667899998887
Q ss_pred C
Q 041513 85 P 85 (294)
Q Consensus 85 p 85 (294)
.
T Consensus 257 T 257 (348)
T COG0809 257 T 257 (348)
T ss_pred c
Confidence 5
No 245
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.89 E-value=81 Score=28.10 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=32.4
Q ss_pred CCCCcccEEEecCcCccccc-----------ChHHHHHHHHhccCCCcEEEEEc-CCC
Q 041513 42 YPSRSFDVAHCSRCLVPWTS-----------YDGLYLMEIDRVLRPGGYWVVSG-PPI 87 (294)
Q Consensus 42 fpd~sFD~V~~s~~l~h~~~-----------d~~~~L~Ei~RVLKPGG~~vis~-pp~ 87 (294)
+..+..|+|+.+.||..+.. +.+.++.-+..+|+|+..+|+.. .|+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv 103 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPV 103 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCC
Confidence 45666799999999954432 22346666777888999999976 454
No 246
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=31.83 E-value=41 Score=31.28 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=48.7
Q ss_pred eeeeeccCCCcHHHHHHHHHc----CCC---cEEEEccCCCCCCC--CCcccEEEec--CcCccccc-------------
Q 041513 6 LTMSFAPLDVHEAQVQFALER----GLP---AMVGLLSTYQLPYP--SRSFDVAHCS--RCLVPWTS------------- 61 (294)
Q Consensus 6 ~t~s~ap~D~S~~mlq~A~er----gv~---~~~~v~d~~~LPfp--d~sFD~V~~s--~~l~h~~~------------- 61 (294)
....+.+.|+++.++..|+-+ ++. ..+...+.-..+.. ...||+|++. +....|..
T Consensus 76 ~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~ 155 (311)
T PF02384_consen 76 KEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYF 155 (311)
T ss_dssp CCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCS
T ss_pred ccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccccccccCCCCccccccccccccccccccccC
Confidence 345778889999999988643 321 23444554433332 5789999985 23221110
Q ss_pred -----ChHHHHHHHHhccCCCcEEEEEcCC
Q 041513 62 -----YDGLYLMEIDRVLRPGGYWVVSGPP 86 (294)
Q Consensus 62 -----d~~~~L~Ei~RVLKPGG~~vis~pp 86 (294)
....++..+.+.||+||++++..|.
T Consensus 156 ~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 156 PPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp SSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred CCccchhhhhHHHHHhhcccccceeEEecc
Confidence 0114778899999999999888863
No 247
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=31.70 E-value=91 Score=30.39 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=52.6
Q ss_pred eccCCCcHHHHHHHHHc----CCC--cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 10 FAPLDVHEAQVQFALER----GLP--AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~er----gv~--~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
+...|+.+..++..++. ++. +....+|+...+...+.||-|++..-- ....++....+.||+||.+.+-
T Consensus 214 V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~-----~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 214 VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK-----SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-----cchhhHHHHHHHhhcCcEEEEE
Confidence 55669999999988774 333 445667888887777999999977432 3336888889999999998886
Q ss_pred c
Q 041513 84 G 84 (294)
Q Consensus 84 ~ 84 (294)
.
T Consensus 289 ~ 289 (341)
T COG2520 289 E 289 (341)
T ss_pred e
Confidence 5
No 248
>COG4373 Mu-like prophage FluMu protein gp28 [General function prediction only]
Probab=31.08 E-value=42 Score=33.17 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 15 VHEAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 15 ~S~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
++.+|++.|..+++|...+.++.+-...+.---..++..+|+.|+ +-....|+|||++.+-+.
T Consensus 258 Iphalie~a~~~~vp~l~fe~~~~f~~~~~~~r~~~~~~~cl~~l--------~P~Lqalnp~~r~~fGvD 320 (509)
T COG4373 258 IPHALIEAAVAAEVPDLIFELGSEFHDIPAWLRESEVLTWCLPDL--------RPALQALNPGGRLYFGVD 320 (509)
T ss_pred ccHHHHHHHHhcCCCceEEEcChhhhhhhhhhhhhhhhhhhhhhh--------hHHHHhcCCCCceeeccc
Confidence 567888888888888766666665555554445566677777443 334567999999999753
No 249
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=30.81 E-value=1.7e+02 Score=26.79 Aligned_cols=34 Identities=26% Similarity=0.179 Sum_probs=25.6
Q ss_pred CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 44 SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 44 d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.+.+|+|+.... ....+.++.+.|+++|+++..+
T Consensus 224 ~~~vd~v~~~~~-------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 224 PYGFDVVIEATG-------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCCcEEEECCC-------ChHHHHHHHHHHhcCCEEEEEe
Confidence 456888875421 1268899999999999998865
No 250
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=30.75 E-value=1.3e+02 Score=28.06 Aligned_cols=75 Identities=21% Similarity=0.156 Sum_probs=55.6
Q ss_pred cccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCCCcccc----CCCcccChHHHHHHHHHHHHHHHhhceEe
Q 041513 46 SFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPISWKTS----YRGWERDAKDLQKEQISLENLATRLCWKK 121 (294)
Q Consensus 46 sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~~~~~~----~~~w~~~~e~l~~~~~~le~l~~~lcW~~ 121 (294)
..|+++|--+++. ...+|-.+..+|+|||.++...-|..-..+ .+|-.++++..+.....+++.+....|+.
T Consensus 144 ~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 144 KPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred CCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 5789998877753 237999999999999999998865432211 23455666666777888999999999988
Q ss_pred eec
Q 041513 122 IAE 124 (294)
Q Consensus 122 v~~ 124 (294)
..-
T Consensus 220 ~gl 222 (245)
T COG1189 220 KGL 222 (245)
T ss_pred eee
Confidence 763
No 251
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.20 E-value=93 Score=24.72 Aligned_cols=64 Identities=17% Similarity=0.034 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcCCC
Q 041513 17 EAQVQFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGPPI 87 (294)
Q Consensus 17 ~~mlq~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~pp~ 87 (294)
+.|-+.|+++|+++.+.......++-.-+.+|+|+.+- ...-.+.++...+.+-|.-+...++.
T Consensus 18 ~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~P-------Qv~~~~~~i~~~~~~~~ipv~~I~~~ 81 (99)
T cd05565 18 NALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAP-------QMASYYDELKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred HHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcC-------hHHHHHHHHHHHhhhcCCCEEEeCHH
Confidence 44556677889988877666666655566789887542 22347788888888888877766543
No 252
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=29.01 E-value=52 Score=30.81 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=26.3
Q ss_pred CCCCcccEEEecC-----cCcccccC-----hHHHHHHHHhccCCCcEEEEE
Q 041513 42 YPSRSFDVAHCSR-----CLVPWTSY-----DGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 42 fpd~sFD~V~~s~-----~l~h~~~d-----~~~~L~Ei~RVLKPGG~~vis 83 (294)
|.....|+|+|-. .+|...+. ...+|.-..+||||||.|+--
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 3445778888854 34222111 123666778999999999864
No 253
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=28.70 E-value=1e+02 Score=30.46 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=31.9
Q ss_pred HHHHHHHhccCCCcEEEEEcCCCCccccCCCcccChHHHHHHHHHHHHHHHhhceEeeecc
Q 041513 65 LYLMEIDRVLRPGGYWVVSGPPISWKTSYRGWERDAKDLQKEQISLENLATRLCWKKIAER 125 (294)
Q Consensus 65 ~~L~Ei~RVLKPGG~~vis~pp~~~~~~~~~w~~~~e~l~~~~~~le~l~~~lcW~~v~~~ 125 (294)
.+|.--.|.||+||.++.|+=..+ +.|+..-.+.+|+.+...+.|-.+...
T Consensus 277 ~iL~rgl~lLk~GG~lVYSTCSLn----------pieNEaVV~~~L~~~~~~~~lv~~~~~ 327 (375)
T KOG2198|consen 277 RILRRGLRLLKVGGRLVYSTCSLN----------PIENEAVVQEALQKVGGAVELVDVSGD 327 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCC----------chhhHHHHHHHHHHhcCcccceeeccc
Confidence 367778899999999999873221 122333456667666655555544443
No 254
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=28.17 E-value=1.6e+02 Score=26.98 Aligned_cols=34 Identities=26% Similarity=0.168 Sum_probs=24.9
Q ss_pred CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 45 RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 45 ~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
+.+|+|+.... . ...+.++.+.|+++|.++..+.
T Consensus 224 ~~~d~vi~~~~------~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 224 GGADVILVTVV------S-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred CCCCEEEECCC------c-HHHHHHHHHhcccCCEEEEECC
Confidence 45888874321 1 2578999999999999998763
No 255
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=27.50 E-value=36 Score=28.96 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=22.4
Q ss_pred CcccEEEecCcCcccc----cCh-------HHHHHHHHhccCCCcEEEEEc
Q 041513 45 RSFDVAHCSRCLVPWT----SYD-------GLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 45 ~sFD~V~~s~~l~h~~----~d~-------~~~L~Ei~RVLKPGG~~vis~ 84 (294)
..||+|+|=.+. +.. .+. ...+.-+...|||||.|++-.
T Consensus 90 ~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 90 EKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp CSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 789999987633 221 111 124444557799999999866
No 256
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=27.37 E-value=96 Score=28.22 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=40.4
Q ss_pred cCCCcHHHHHHHH----HcCCC-cEEEEccCCCCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEE
Q 041513 12 PLDVHEAQVQFAL----ERGLP-AMVGLLSTYQLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVV 82 (294)
Q Consensus 12 p~D~S~~mlq~A~----ergv~-~~~~v~d~~~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vi 82 (294)
-.|....-+.|-+ +.+++ +.+...-++.+.-....||+|+|-.+- ....++.=+...||+||+++.
T Consensus 96 Lles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 96 LLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-----chHHHHHHHHHhcccCCcchh
Confidence 3455555555543 34676 556555577665322229999765443 333566667788999998764
No 257
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=26.90 E-value=1.8e+02 Score=26.70 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=23.5
Q ss_pred CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 45 RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 45 ~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
+.+|+|+-... ...+.+..++|++||+++..+
T Consensus 206 ~gvdvv~d~~G--------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 206 DGYDCYFDNVG--------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCeEEEEECCC--------HHHHHHHHHHhCcCcEEEEec
Confidence 45888864311 246688999999999999865
No 258
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=26.73 E-value=1.9e+02 Score=27.56 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=47.9
Q ss_pred eeeccCCCcHHHHHHHHHc------CCCcEEEEcc----CCCCCCCCCcccEEEecCcCcccccChH-HHHHHHHhccCC
Q 041513 8 MSFAPLDVHEAQVQFALER------GLPAMVGLLS----TYQLPYPSRSFDVAHCSRCLVPWTSYDG-LYLMEIDRVLRP 76 (294)
Q Consensus 8 ~s~ap~D~S~~mlq~A~er------gv~~~~~v~d----~~~LPfpd~sFD~V~~s~~l~h~~~d~~-~~L~Ei~RVLKP 76 (294)
....|.|+|+..++.-.+. ++++.-.+++ ...+| .-++-=+++...++-++.+++. .+|..+.-+|+|
T Consensus 107 ~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~p 185 (321)
T COG4301 107 LRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRP 185 (321)
T ss_pred ceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCC
Confidence 5678999999998764332 2333322222 12233 2233334445566767765554 588899999999
Q ss_pred CcEEEEEc
Q 041513 77 GGYWVVSG 84 (294)
Q Consensus 77 GG~~vis~ 84 (294)
|-+|++-+
T Consensus 186 Gd~~LlGv 193 (321)
T COG4301 186 GDYFLLGV 193 (321)
T ss_pred cceEEEec
Confidence 99999976
No 259
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=26.39 E-value=2.3e+02 Score=26.61 Aligned_cols=68 Identities=16% Similarity=0.053 Sum_probs=39.6
Q ss_pred eccCCCcHHHHHHHHHcCCCcEEEEccCCCC-----C-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEE
Q 041513 10 FAPLDVHEAQVQFALERGLPAMVGLLSTYQL-----P-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 10 ~ap~D~S~~mlq~A~ergv~~~~~v~d~~~L-----P-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
+...|.+++.+++|++.|....+. ...... . .....+|+|+-.-. .+ ..+.+..+.||+||++++.
T Consensus 204 Vi~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vid~~g------~~-~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 204 IIAVDIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVIDAVG------RP-ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEEcCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEEECCC------CH-HHHHHHHHHhccCCEEEEE
Confidence 334466777777777666432221 101000 0 12235888874322 12 5788889999999999987
Q ss_pred cC
Q 041513 84 GP 85 (294)
Q Consensus 84 ~p 85 (294)
+-
T Consensus 276 G~ 277 (358)
T TIGR03451 276 GV 277 (358)
T ss_pred CC
Confidence 73
No 260
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=26.03 E-value=1.7e+02 Score=26.90 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=43.5
Q ss_pred ceeeeeccCCCcHHHHHHHHHcC--CCcEEEEccCC---CCCCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcE
Q 041513 5 ILTMSFAPLDVHEAQVQFALERG--LPAMVGLLSTY---QLPYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGY 79 (294)
Q Consensus 5 v~t~s~ap~D~S~~mlq~A~erg--v~~~~~v~d~~---~LPfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~ 79 (294)
+-++.|+|+=. .+.|..|++|. +|+. .|+. ...+-=...|+|++--+- .+....+...+..-||+||+
T Consensus 103 iYaVEfs~R~~-reLl~~a~~R~Ni~PIL---~DA~~P~~Y~~~Ve~VDviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~ 175 (231)
T COG1889 103 IYAVEFSPRPM-RELLDVAEKRPNIIPIL---EDARKPEKYRHLVEKVDVIYQDVAQ---PNQAEILADNAEFFLKKGGY 175 (231)
T ss_pred EEEEEecchhH-HHHHHHHHhCCCceeee---cccCCcHHhhhhcccccEEEEecCC---chHHHHHHHHHHHhcccCCe
Confidence 44566666544 45777887764 2322 2322 111123457888754322 23334578889999999999
Q ss_pred EEEEc
Q 041513 80 WVVSG 84 (294)
Q Consensus 80 ~vis~ 84 (294)
++++.
T Consensus 176 ~~i~i 180 (231)
T COG1889 176 VVIAI 180 (231)
T ss_pred EEEEE
Confidence 88876
No 261
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=25.72 E-value=2.4e+02 Score=24.11 Aligned_cols=32 Identities=19% Similarity=0.040 Sum_probs=21.8
Q ss_pred CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 45 RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 45 ~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
...|++++. ++ ..+.....-|||||++++...
T Consensus 66 ~~~D~lval--------~~-~~~~~~~~~l~~~g~vi~n~~ 97 (177)
T PRK08537 66 ISPDILVAM--------SQ-EAYDKYLDDLKEGGTVIVDPD 97 (177)
T ss_pred CCCCEEEEe--------CH-HHHHHHHhccCCCeEEEEECC
Confidence 457888754 22 233455667999999998764
No 262
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=24.83 E-value=2e+02 Score=26.39 Aligned_cols=32 Identities=38% Similarity=0.443 Sum_probs=23.9
Q ss_pred cccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 46 SFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 46 sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
.||+|+..... ...+.++.+.|+++|.++..+
T Consensus 231 ~vd~vld~~g~-------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 231 DFDVVFEASGA-------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CccEEEECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 47888754221 257899999999999999765
No 263
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=24.69 E-value=2.1e+02 Score=25.40 Aligned_cols=34 Identities=29% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 44 SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 44 d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
...+|+|+....- ...+.+..+.|+++|.++..+
T Consensus 157 ~~~~d~vl~~~~~-------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 157 GRGADVVIEASGS-------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCCCCEEEEccCC-------hHHHHHHHHHhcCCcEEEEEe
Confidence 3458888743211 257889999999999999765
No 264
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=24.22 E-value=59 Score=27.23 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=27.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhhh--cCCCCCccee
Q 041513 212 KSFNEDNQLWKKRVSHYRIILE--SLFSGKFRNI 243 (294)
Q Consensus 212 ~~f~~D~~~W~~~v~~Y~~~~~--~~~~~~~RNv 243 (294)
=.|..-+..|++|+..-+++++ +|...|+|=+
T Consensus 67 CHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~ 100 (132)
T COG1908 67 CHYISGNYKAKRRMELLKELLKELGIEPERVRVL 100 (132)
T ss_pred eeeeccchHHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 4699999999999999999887 6778888743
No 265
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=23.19 E-value=4.3e+02 Score=24.59 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCCcHHHHHHH----HHcCCCcEEEEcc-CCCCCCC-CCcccEEEecCcCcccccChHHHHHHHHhccCCCc-EEEEE
Q 041513 13 LDVHEAQVQFA----LERGLPAMVGLLS-TYQLPYP-SRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGG-YWVVS 83 (294)
Q Consensus 13 ~D~S~~mlq~A----~ergv~~~~~v~d-~~~LPfp-d~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG-~~vis 83 (294)
.|+.+.+|++. ++.|+++.....| -..||-. .+.||++++-=--. .+....++.-....||..| ..+++
T Consensus 73 vDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT--~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 73 VDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT--PEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp E-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS--HHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred EEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC--HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 49999999885 4557887666666 3344432 58999998742210 0112246666677788655 44443
No 266
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=22.71 E-value=1.4e+02 Score=25.23 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=27.9
Q ss_pred CCCCCC-CcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 39 QLPYPS-RSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 39 ~LPfpd-~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
..+.+. ..+|++++. ++ ..+.....-|||||.+++...
T Consensus 49 ~~~~~~~~~~Dilv~l--------~~-~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 49 IIPSPPVGEADILVAL--------DP-EALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp -SSSS-TSSESEEEES--------SH-HHHHHCGTTCETTEEEEEETT
T ss_pred CccCcccCCCCEEEEc--------CH-HHHHHHhcCcCcCeEEEEECC
Confidence 344444 899999865 33 566688888999999999875
No 267
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=22.34 E-value=1e+02 Score=30.16 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHcCCCcE--EEEccCCCCCCCCCcccEEEecCcCccc---ccChHHHHHHHHhccCCCcEEEEE
Q 041513 21 QFALERGLPAM--VGLLSTYQLPYPSRSFDVAHCSRCLVPW---TSYDGLYLMEIDRVLRPGGYWVVS 83 (294)
Q Consensus 21 q~A~ergv~~~--~~v~d~~~LPfpd~sFD~V~~s~~l~h~---~~d~~~~L~Ei~RVLKPGG~~vis 83 (294)
+.++..+.... +..+..+.+-+|-..+|+|++-+.= ++ ..-....|--=.|-|+|||.++=+
T Consensus 100 ~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG-y~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 100 KIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG-YFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHHhcCccceEEEeecceEEEecCccceeEEeehhhh-HHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 33344555433 3334466666668899999985433 22 112234556667999999987643
No 268
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=21.90 E-value=29 Score=32.76 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=37.2
Q ss_pred hhhhhHHHHHHHHHH----HHHhhh-cCCCCCcceeeccccCcchh-H----hhhc-------CCCceEEEecCCCCCCC
Q 041513 213 SFNEDNQLWKKRVSH----YRIILE-SLFSGKFRNIMDMNAGLGGF-A----AALA-------KYPVWVMNAVPFDAKHN 275 (294)
Q Consensus 213 ~f~~D~~~W~~~v~~----Y~~~~~-~~~~~~~RNvmDMnA~~GGF-A----AAl~-------~~~vWVMNVvP~~~~~~ 275 (294)
++....+-|.-.++| |.++|. .|...|=|-|=|..-+.==| . -.|. +.-.=|.||||+.|..|
T Consensus 116 DqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vvNvvPVIakaD 195 (336)
T KOG1547|consen 116 DQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVVNVVPVIAKAD 195 (336)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhheeeeeEeecc
Confidence 455556778766653 555554 45555555555555432111 0 0111 11123889999999989
Q ss_pred Cccc
Q 041513 276 TLQT 279 (294)
Q Consensus 276 tL~v 279 (294)
||-.
T Consensus 196 tlTl 199 (336)
T KOG1547|consen 196 TLTL 199 (336)
T ss_pred cccH
Confidence 9854
No 269
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=21.72 E-value=1.1e+02 Score=30.98 Aligned_cols=62 Identities=27% Similarity=0.535 Sum_probs=39.8
Q ss_pred cccchhhhhh---HHHHHHHHHHHHHhhhcCCCCCcceeeccccCcchhHhhhcC--------C--CceEEEecCCCC
Q 041513 208 GITVKSFNED---NQLWKKRVSHYRIILESLFSGKFRNIMDMNAGLGGFAAALAK--------Y--PVWVMNAVPFDA 272 (294)
Q Consensus 208 g~~~~~f~~D---~~~W~~~v~~Y~~~~~~~~~~~~RNvmDMnA~~GGFAAAl~~--------~--~vWVMNVvP~~~ 272 (294)
|+-.+.|.|- -++|.+ +..|-.--..|. -+.=+-||-.|+|||||++.. . +.|+-|-=|.+.
T Consensus 175 ~iG~d~f~E~s~~eE~~Dr-Lr~~VEECD~lQ--GFq~l~Did~GfgG~as~~le~l~DEys~~~v~tw~~~~~p~s~ 249 (483)
T KOG2530|consen 175 SIGYDVFTENSYQEEFCDR-LRFYVEECDTLQ--GFQLLSDIDDGFGGFASKLLEELQDEYSKKAVFTWGHNPRPFSQ 249 (483)
T ss_pred ccchhhhhccchhHHHHHH-HHHHHHhccccc--ceEEEEecCCCchhHHHHHHHHHHHhhcCCceeccccCCCCCCc
Confidence 4445556554 467777 666654221222 455688999999999999852 2 469988855544
No 270
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=21.67 E-value=2e+02 Score=26.09 Aligned_cols=64 Identities=22% Similarity=0.119 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHHcCCCcEEEEcc-CCCC-C-CCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 14 DVHEAQVQFALERGLPAMVGLLS-TYQL-P-YPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 14 D~S~~mlq~A~ergv~~~~~v~d-~~~L-P-fpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
|.+++-++.|++.|....+...+ .+.+ . .....+|+|+-.-. . ...+.+..+.|+|||.+++.+
T Consensus 152 ~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G------~-~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 152 DPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG------A-TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC------C-hHHHHHHHHHhcCCCEEEEec
Confidence 66677777777766532221000 0000 0 12235888864322 1 257889999999999999866
No 271
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=21.59 E-value=1.7e+02 Score=27.71 Aligned_cols=66 Identities=23% Similarity=0.186 Sum_probs=39.2
Q ss_pred ccCCCcHHHHHHHHHcCCCcEEEEccCCC----C-CCCCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEc
Q 041513 11 APLDVHEAQVQFALERGLPAMVGLLSTYQ----L-PYPSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSG 84 (294)
Q Consensus 11 ap~D~S~~mlq~A~ergv~~~~~v~d~~~----L-Pfpd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~ 84 (294)
...|.+++.++.|++.|....+... .+. + ....+.+|+|+-+-.- ...+.+..+.|++||.+++.+
T Consensus 220 i~~~~~~~r~~~a~~~Ga~~~i~~~-~~~~~~~i~~~~~~g~d~vid~~G~-------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 220 VAVDLNEDKLALARELGATATVNAG-DPNAVEQVRELTGGGVDYAFEMAGS-------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEcCCHHHHHHHHHcCCceEeCCC-chhHHHHHHHHhCCCCCEEEECCCC-------hHHHHHHHHHHhcCCEEEEEc
Confidence 3346777778888776653222111 110 0 0112258888743221 157888999999999999876
No 272
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=21.27 E-value=1.5e+02 Score=20.18 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhceEeeecccceeEeeCCCC
Q 041513 107 QISLENLATRLCWKKIAERGPIAVWRKPTN 136 (294)
Q Consensus 107 ~~~le~l~~~lcW~~v~~~~~~~iw~Kp~~ 136 (294)
|++|..+++..+|+....++.-.+|.++..
T Consensus 1 ~~el~k~L~~~G~~~~r~~GSH~~~~~~~~ 30 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQKGSHHIFRHPGG 30 (56)
T ss_dssp -HHHHHHHHHTT-EEEEEETTEEEEE-TTS
T ss_pred ChHHHHHHHHCCCEEecCCCCEEEEEeCCC
Confidence 356888899999999988888899998865
No 273
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=21.25 E-value=83 Score=30.15 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHHHHhccCCCcEEEEEc-C
Q 041513 64 GLYLMEIDRVLRPGGYWVVSG-P 85 (294)
Q Consensus 64 ~~~L~Ei~RVLKPGG~~vis~-p 85 (294)
..+|..+..+|+|||++++.. |
T Consensus 220 ~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEEecC
Confidence 358889999999999998865 5
No 274
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=20.87 E-value=1.5e+02 Score=22.69 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=25.4
Q ss_pred HHHHHcCCCcEEEEccCCCCCCCCCcccEEEecCcC
Q 041513 21 QFALERGLPAMVGLLSTYQLPYPSRSFDVAHCSRCL 56 (294)
Q Consensus 21 q~A~ergv~~~~~v~d~~~LPfpd~sFD~V~~s~~l 56 (294)
+.++++|+++...+++....+-....+|+|+++.-+
T Consensus 9 ~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt~~l 44 (85)
T PRK10222 9 QFLTQSNIDHTVNSCAVGEYKSELSGADIIIASTHI 44 (85)
T ss_pred HHHHHcCCCeEEEEeehhhcccCCCCCCEEEECccc
Confidence 345678998888777766665444467999988555
No 275
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=20.53 E-value=3.8e+02 Score=24.89 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=18.5
Q ss_pred HHHHHHHhccCCCcEEEEEcC
Q 041513 65 LYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 65 ~~L~Ei~RVLKPGG~~vis~p 85 (294)
..+.+..+.|++||.+++.+.
T Consensus 241 ~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 241 QTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred HHHHHHHHHhhcCCEEEEEcc
Confidence 588999999999999998863
No 276
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=20.53 E-value=97 Score=29.92 Aligned_cols=72 Identities=10% Similarity=0.023 Sum_probs=42.6
Q ss_pred eeccCCCcHHHHHHHHHc----CC-CcEEEEccCCCC-C-------C---C-----CCcccEEEecCcCcccccChHH-H
Q 041513 9 SFAPLDVHEAQVQFALER----GL-PAMVGLLSTYQL-P-------Y---P-----SRSFDVAHCSRCLVPWTSYDGL-Y 66 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er----gv-~~~~~v~d~~~L-P-------f---p-----d~sFD~V~~s~~l~h~~~d~~~-~ 66 (294)
.+.+.|.+++|++.|+++ ++ .+.+...++... + + . ...||+|+.- .|.. +
T Consensus 221 ~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lD--------PPR~G~ 292 (353)
T TIGR02143 221 RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVD--------PPRAGL 292 (353)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEEC--------CCCCCC
Confidence 567779999999999874 34 355666664432 1 1 0 1137877532 2211 1
Q ss_pred HHHH-HhccCCCcEEEEEcCCCC
Q 041513 67 LMEI-DRVLRPGGYWVVSGPPIS 88 (294)
Q Consensus 67 L~Ei-~RVLKPGG~~vis~pp~~ 88 (294)
..++ ..+++|++.+++|..|..
T Consensus 293 ~~~~l~~l~~~~~ivYvsC~p~t 315 (353)
T TIGR02143 293 DPDTCKLVQAYERILYISCNPET 315 (353)
T ss_pred cHHHHHHHHcCCcEEEEEcCHHH
Confidence 1222 334458999999997654
No 277
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=20.49 E-value=3.9e+02 Score=24.63 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHcCCCcEEEEccC--CCC-CC-CCCcccEEEecCcCcccccChHHHHHHHHhccCCCcEEEEEcC
Q 041513 13 LDVHEAQVQFALERGLPAMVGLLST--YQL-PY-PSRSFDVAHCSRCLVPWTSYDGLYLMEIDRVLRPGGYWVVSGP 85 (294)
Q Consensus 13 ~D~S~~mlq~A~ergv~~~~~v~d~--~~L-Pf-pd~sFD~V~~s~~l~h~~~d~~~~L~Ei~RVLKPGG~~vis~p 85 (294)
.|.+++.++.|++.|....+...+. +.+ .+ ....||+|+-+.. .. ..+.+..+.|+++|.+++.+.
T Consensus 194 ~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g------~~-~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 194 VDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG------NT-AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC------CH-HHHHHHHHHhhcCCEEEEEcC
Confidence 4666777777777665322211110 000 11 2346898874322 11 467888999999999998763
No 278
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=20.48 E-value=4.7e+02 Score=25.17 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=30.5
Q ss_pred eeccCCCcHHHHHHHHHc-----CCC--cEEEE-ccCCCC----CCCCCcccEEEecCcC
Q 041513 9 SFAPLDVHEAQVQFALER-----GLP--AMVGL-LSTYQL----PYPSRSFDVAHCSRCL 56 (294)
Q Consensus 9 s~ap~D~S~~mlq~A~er-----gv~--~~~~v-~d~~~L----Pfpd~sFD~V~~s~~l 56 (294)
.|.+.|+++.+++.|++. ++. +.+.. .+...+ -.+++.||+|+|.==+
T Consensus 140 ~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 140 RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPF 199 (321)
T ss_pred EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCC
Confidence 577889999999999863 232 22322 222222 1356789999998544
No 279
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=20.41 E-value=2.3e+02 Score=24.34 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=22.9
Q ss_pred CCCCCcccEEEecCcCcccccChHHHHH--HHHhccCCCcEEEEEc
Q 041513 41 PYPSRSFDVAHCSRCLVPWTSYDGLYLM--EIDRVLRPGGYWVVSG 84 (294)
Q Consensus 41 Pfpd~sFD~V~~s~~l~h~~~d~~~~L~--Ei~RVLKPGG~~vis~ 84 (294)
+-+-...|+++|..- ..+. .+..-|||||.+++..
T Consensus 61 ~~~~~~~D~lva~~~---------~~~~~~~~~~~l~~gg~vi~ns 97 (181)
T PRK08534 61 RSQIYEPDYVIVQDP---------TLLDSVDVTSGLKKDGIIIINT 97 (181)
T ss_pred cccCCCCCEEEEcCH---------HHhcchhHhcCcCCCcEEEEEC
Confidence 334567898886532 2232 3356799999999875
Done!