BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041515
         (762 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JSH|B Chain B, Crystal Structure Of H9 Haemagglutinin Complexed With Lsta
           Receptor Analog
 pdb|1JSI|B Chain B, Crystal Structure Of H9 Haemagglutinin Bound To Lstc
           Receptor Analog
 pdb|1JSD|B Chain B, Crystal Structure Of Swine H9 Haemagglutinin
          Length = 176

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 67/145 (46%), Gaps = 19/145 (13%)

Query: 396 DIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRRE 455
           D +   K   ++  + N+I +++++ Y ++D      ++ +     ++ KI   D   ++
Sbjct: 37  DSDSTQKAIDKITSKVNNIVDKMNKQYGIIDHEF---SEIETRLNMINNKI---DDQIQD 90

Query: 456 IAEYEKKLAAVASRSLNVDKLQADVDVI------------MKENEFLEQQFHR-DGRALE 502
           I  Y  +L  +      +D+  A+V+ +            M++ +   + +H+ D + +E
Sbjct: 91  IWTYNAELLVLLENQKTLDEHDANVNNLYNKVKRALGSNAMEDGKGCFELYHKCDDQCME 150

Query: 503 EIRGALYNEIRTSDGAKRQQQKICG 527
            IR   YN  +  + +K ++QKI G
Sbjct: 151 TIRNGTYNRRKYKEESKLERQKIEG 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,192,355
Number of Sequences: 62578
Number of extensions: 643573
Number of successful extensions: 1613
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1610
Number of HSP's gapped (non-prelim): 8
length of query: 762
length of database: 14,973,337
effective HSP length: 106
effective length of query: 656
effective length of database: 8,340,069
effective search space: 5471085264
effective search space used: 5471085264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)