Query 041515
Match_columns 762
No_of_seqs 268 out of 1427
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05667 DUF812: Protein of un 100.0 4E-102 8E-107 889.8 40.6 412 41-470 1-594 (594)
2 KOG1937 Uncharacterized conser 100.0 5E-100 1E-104 810.5 38.8 428 41-492 1-516 (521)
3 KOG1441 Glucose-6-phosphate/ph 100.0 8E-35 1.7E-39 311.7 16.1 245 516-762 6-257 (316)
4 KOG1444 Nucleotide-sugar trans 100.0 2.5E-28 5.3E-33 257.0 21.2 235 526-761 11-249 (314)
5 KOG1443 Predicted integral mem 100.0 2.5E-28 5.5E-33 253.3 16.0 234 525-761 14-264 (349)
6 PTZ00343 triose or hexose phos 100.0 9E-27 1.9E-31 256.4 27.9 235 525-762 47-298 (350)
7 TIGR00817 tpt Tpt phosphate/ph 99.9 7.7E-25 1.7E-29 235.8 25.2 199 527-729 2-201 (302)
8 KOG1442 GDP-fucose transporter 99.9 9E-24 1.9E-28 216.2 6.5 236 526-761 27-276 (347)
9 COG5070 VRG4 Nucleotide-sugar 99.9 5.4E-22 1.2E-26 197.8 14.0 229 528-761 7-245 (309)
10 PF08449 UAA: UAA transporter 99.8 6.6E-19 1.4E-23 190.3 25.7 225 533-761 7-246 (303)
11 KOG1582 UDP-galactose transpor 99.6 2E-14 4.4E-19 147.7 12.5 210 543-757 59-280 (367)
12 KOG1581 UDP-galactose transpor 99.5 8.2E-13 1.8E-17 138.6 23.5 188 531-721 13-220 (327)
13 PF06027 DUF914: Eukaryotic pr 99.5 1.6E-12 3.5E-17 141.7 26.1 192 545-740 31-233 (334)
14 KOG1580 UDP-galactose transpor 99.5 2E-13 4.3E-18 137.9 12.1 175 554-732 49-232 (337)
15 TIGR00950 2A78 Carboxylate/Ami 99.4 2.3E-11 5.1E-16 127.5 24.7 197 544-754 6-205 (260)
16 PLN00411 nodulin MtN21 family 99.4 4.2E-11 9.2E-16 132.6 25.2 196 527-727 13-242 (358)
17 PRK11453 O-acetylserine/cystei 99.3 3.9E-10 8.5E-15 121.7 27.3 213 528-757 9-231 (299)
18 PF04142 Nuc_sug_transp: Nucle 99.3 5.9E-11 1.3E-15 124.8 19.4 162 595-756 19-201 (244)
19 PRK11272 putative DMT superfam 99.3 1E-09 2.3E-14 118.0 27.1 199 544-755 25-227 (292)
20 PRK11689 aromatic amino acid e 99.3 1.7E-09 3.7E-14 116.6 25.9 164 527-706 8-187 (295)
21 PRK15430 putative chlorampheni 99.2 3.4E-09 7.5E-14 114.3 22.9 176 533-718 15-194 (296)
22 TIGR00688 rarD rarD protein. T 99.1 7.1E-09 1.5E-13 109.2 22.9 143 545-696 20-169 (256)
23 KOG2234 Predicted UDP-galactos 99.1 8.1E-09 1.8E-13 111.5 23.4 225 532-756 20-270 (345)
24 PRK10532 threonine and homoser 99.1 1.8E-08 3.8E-13 108.7 25.8 165 545-726 30-198 (293)
25 COG0697 RhaT Permeases of the 99.0 1.8E-07 3.9E-12 98.5 28.5 145 558-708 36-186 (292)
26 KOG3912 Predicted integral mem 99.0 4.1E-08 8.8E-13 102.3 19.5 188 534-721 10-224 (372)
27 KOG1583 UDP-N-acetylglucosamin 98.9 7.4E-09 1.6E-13 107.7 11.6 191 558-753 33-255 (330)
28 KOG2765 Predicted membrane pro 98.8 3E-08 6.6E-13 107.1 13.4 127 600-726 166-302 (416)
29 TIGR03340 phn_DUF6 phosphonate 98.8 6.1E-07 1.3E-11 96.1 23.5 102 593-695 63-166 (281)
30 PF03151 TPT: Triose-phosphate 98.8 1.7E-08 3.6E-13 97.6 9.5 89 674-762 1-103 (153)
31 TIGR00776 RhaT RhaT L-rhamnose 98.6 6.6E-06 1.4E-10 88.8 22.4 167 528-711 6-186 (290)
32 PF00892 EamA: EamA-like trans 98.5 5E-07 1.1E-11 83.1 10.0 117 542-664 6-125 (126)
33 KOG4510 Permease of the drug/m 98.3 3.3E-07 7.2E-12 95.1 4.0 189 526-726 38-242 (346)
34 COG5006 rhtA Threonine/homoser 98.2 0.00014 2.9E-09 75.7 19.8 170 545-729 30-202 (292)
35 KOG2766 Predicted membrane pro 98.2 4.9E-07 1.1E-11 93.3 0.5 192 538-738 29-228 (336)
36 COG2962 RarD Predicted permeas 98.1 0.00021 4.5E-09 76.0 19.8 167 527-708 8-179 (293)
37 PF13536 EmrE: Multidrug resis 98.1 9.9E-06 2.1E-10 75.1 8.2 77 591-669 32-110 (113)
38 KOG4314 Predicted carbohydrate 98.1 1E-05 2.3E-10 80.8 8.3 111 592-702 52-164 (290)
39 COG2510 Predicted membrane pro 97.8 0.00029 6.2E-09 66.3 12.4 129 532-665 8-139 (140)
40 TIGR00950 2A78 Carboxylate/Ami 97.8 0.00078 1.7E-08 70.7 16.2 115 543-661 144-260 (260)
41 PLN00411 nodulin MtN21 family 97.6 0.001 2.2E-08 74.1 15.7 122 540-665 203-328 (358)
42 PF03151 TPT: Triose-phosphate 97.6 0.0017 3.7E-08 62.5 14.7 133 531-665 5-153 (153)
43 TIGR00803 nst UDP-galactose tr 97.6 0.00031 6.7E-09 72.6 9.7 139 617-755 2-171 (222)
44 PRK15051 4-amino-4-deoxy-L-ara 97.5 0.0012 2.6E-08 61.4 12.0 63 602-665 46-109 (111)
45 PRK11272 putative DMT superfam 97.5 0.0013 2.9E-08 70.8 14.3 109 557-666 176-286 (292)
46 KOG0250 DNA repair protein RAD 97.0 0.18 3.9E-06 62.1 25.8 162 282-466 286-455 (1074)
47 PRK10532 threonine and homoser 97.0 0.015 3.2E-07 62.8 15.4 69 596-665 211-281 (293)
48 PHA02562 46 endonuclease subun 97.0 0.05 1.1E-06 64.0 20.3 210 253-490 185-398 (562)
49 TIGR02169 SMC_prok_A chromosom 97.0 0.069 1.5E-06 68.0 23.0 18 127-144 552-569 (1164)
50 TIGR02169 SMC_prok_A chromosom 96.9 0.12 2.7E-06 65.7 25.1 15 107-121 120-134 (1164)
51 PRK11689 aromatic amino acid e 96.9 0.017 3.8E-07 62.4 14.6 72 593-665 215-287 (295)
52 PRK10452 multidrug efflux syst 96.9 0.0075 1.6E-07 56.9 10.2 72 596-667 33-105 (120)
53 PRK11453 O-acetylserine/cystei 96.8 0.025 5.5E-07 61.2 15.2 73 593-666 214-288 (299)
54 COG1196 Smc Chromosome segrega 96.8 0.28 6.2E-06 63.0 26.8 102 379-488 882-987 (1163)
55 COG1340 Uncharacterized archae 96.8 0.69 1.5E-05 49.9 25.2 177 308-490 61-247 (294)
56 PRK02224 chromosome segregatio 96.8 0.24 5.3E-06 61.6 25.5 36 337-372 265-300 (880)
57 TIGR00817 tpt Tpt phosphate/ph 96.8 0.0073 1.6E-07 65.3 10.4 120 544-665 162-293 (302)
58 PF06800 Sugar_transport: Suga 96.8 0.037 8.1E-07 59.2 15.3 127 592-723 44-184 (269)
59 KOG0250 DNA repair protein RAD 96.8 0.35 7.5E-06 59.7 25.0 137 282-427 226-369 (1074)
60 PRK03918 chromosome segregatio 96.7 0.33 7.1E-06 60.4 25.9 30 283-312 192-221 (880)
61 KOG0161 Myosin class II heavy 96.7 0.39 8.5E-06 63.3 26.2 192 283-480 1328-1524(1930)
62 KOG0933 Structural maintenance 96.7 0.24 5.2E-06 60.4 22.4 139 282-420 785-938 (1174)
63 PHA02562 46 endonuclease subun 96.7 0.34 7.4E-06 57.0 24.1 18 452-469 356-373 (562)
64 PRK02224 chromosome segregatio 96.6 0.66 1.4E-05 57.8 27.5 130 284-415 307-446 (880)
65 PRK10650 multidrug efflux syst 96.6 0.021 4.5E-07 53.0 10.6 66 598-663 40-106 (109)
66 COG2076 EmrE Membrane transpor 96.6 0.014 3E-07 53.7 9.2 67 599-665 36-103 (106)
67 PRK02971 4-amino-4-deoxy-L-ara 96.6 0.01 2.2E-07 56.8 8.7 70 596-666 50-123 (129)
68 PRK11431 multidrug efflux syst 96.5 0.022 4.7E-07 52.6 10.2 69 597-665 33-102 (105)
69 TIGR00606 rad50 rad50. This fa 96.5 0.51 1.1E-05 61.5 26.1 30 387-416 983-1012(1311)
70 PRK01156 chromosome segregatio 96.5 0.87 1.9E-05 56.9 27.3 144 283-431 521-672 (895)
71 PRK11637 AmiB activator; Provi 96.5 0.15 3.3E-06 58.3 18.9 36 282-317 94-129 (428)
72 KOG1029 Endocytic adaptor prot 96.5 0.64 1.4E-05 55.3 23.5 82 340-423 419-507 (1118)
73 TIGR00606 rad50 rad50. This fa 96.5 0.66 1.4E-05 60.4 26.7 116 350-465 798-913 (1311)
74 PRK15430 putative chlorampheni 96.4 0.057 1.2E-06 58.4 14.6 68 596-664 216-284 (296)
75 TIGR02168 SMC_prok_B chromosom 96.4 0.37 7.9E-06 61.3 24.0 9 74-82 39-47 (1179)
76 PTZ00343 triose or hexose phos 96.4 0.031 6.8E-07 62.1 12.6 135 527-665 195-348 (350)
77 TIGR03185 DNA_S_dndD DNA sulfu 96.4 0.27 5.9E-06 59.2 21.3 40 382-421 377-417 (650)
78 TIGR03340 phn_DUF6 phosphonate 96.4 0.013 2.7E-07 62.9 9.0 61 601-662 219-280 (281)
79 PF14662 CCDC155: Coiled-coil 96.4 1.2 2.6E-05 45.1 22.0 173 255-465 14-190 (193)
80 KOG4673 Transcription factor T 96.3 1.9 4.1E-05 50.8 25.9 216 283-500 408-641 (961)
81 PRK09541 emrE multidrug efflux 96.3 0.069 1.5E-06 49.7 12.2 67 599-665 36-103 (110)
82 KOG0161 Myosin class II heavy 96.2 0.68 1.5E-05 61.2 24.6 82 35-120 637-728 (1930)
83 PRK03918 chromosome segregatio 96.2 1 2.2E-05 56.1 25.4 9 74-82 39-47 (880)
84 COG0697 RhaT Permeases of the 96.1 0.15 3.2E-06 53.6 15.4 74 592-666 213-288 (292)
85 PF06027 DUF914: Eukaryotic pr 96.1 0.061 1.3E-06 59.5 12.6 64 605-668 245-308 (334)
86 COG1196 Smc Chromosome segrega 96.1 1.4 3.1E-05 56.7 26.5 38 392-429 387-424 (1163)
87 PRK01156 chromosome segregatio 96.0 3 6.5E-05 52.2 28.4 87 283-370 468-558 (895)
88 KOG4643 Uncharacterized coiled 95.9 2.8 6.2E-05 51.5 25.8 148 338-488 416-581 (1195)
89 COG1579 Zn-ribbon protein, pos 95.9 0.59 1.3E-05 49.2 18.2 136 283-426 6-141 (239)
90 KOG0933 Structural maintenance 95.9 1.5 3.3E-05 53.8 23.2 92 337-428 794-890 (1174)
91 KOG0976 Rho/Rac1-interacting s 95.8 2.2 4.7E-05 51.1 23.8 133 344-489 277-421 (1265)
92 PF13514 AAA_27: AAA domain 95.8 3.4 7.3E-05 53.1 27.7 134 333-467 739-874 (1111)
93 PRK11637 AmiB activator; Provi 95.7 4.4 9.5E-05 46.4 26.0 27 338-364 104-130 (428)
94 PF08449 UAA: UAA transporter 95.6 0.11 2.4E-06 56.4 12.1 135 530-665 157-297 (303)
95 TIGR00776 RhaT RhaT L-rhamnose 95.6 0.096 2.1E-06 56.7 11.2 70 595-665 213-288 (290)
96 PRK04778 septation ring format 95.5 7.4 0.00016 46.4 29.4 136 346-490 350-488 (569)
97 PF07888 CALCOCO1: Calcium bin 95.5 7.3 0.00016 45.7 27.1 17 115-131 44-60 (546)
98 TIGR03007 pepcterm_ChnLen poly 95.5 3.9 8.4E-05 47.6 24.8 84 336-419 203-292 (498)
99 KOG0996 Structural maintenance 95.4 2.3 5E-05 53.1 22.7 88 339-427 867-960 (1293)
100 PF10174 Cast: RIM-binding pro 95.1 7.4 0.00016 47.8 26.2 166 340-505 318-499 (775)
101 PF05653 Mg_trans_NIPA: Magnes 95.0 0.46 1E-05 51.9 14.4 69 597-665 53-122 (300)
102 PF00261 Tropomyosin: Tropomyo 94.8 4.9 0.00011 42.4 21.1 29 250-278 23-51 (237)
103 KOG0996 Structural maintenance 94.8 1.4 3E-05 55.0 18.6 80 379-468 512-591 (1293)
104 KOG0977 Nuclear envelope prote 94.7 6.3 0.00014 46.3 23.0 59 248-310 55-132 (546)
105 PF10174 Cast: RIM-binding pro 94.6 8.4 0.00018 47.4 24.8 217 283-500 321-598 (775)
106 KOG0946 ER-Golgi vesicle-tethe 94.6 8.1 0.00018 46.8 23.6 100 329-428 736-836 (970)
107 PF07888 CALCOCO1: Calcium bin 94.5 3.9 8.4E-05 47.9 20.7 87 388-484 230-320 (546)
108 PF06160 EzrA: Septation ring 94.4 2.1 4.5E-05 50.9 18.9 148 282-431 342-494 (560)
109 KOG0995 Centromere-associated 94.4 14 0.00029 43.4 29.5 44 103-146 73-116 (581)
110 KOG0994 Extracellular matrix g 94.3 3.9 8.5E-05 50.9 20.6 69 378-446 1581-1649(1758)
111 PF00038 Filament: Intermediat 94.3 8 0.00017 42.1 22.0 44 377-420 191-234 (312)
112 PF05667 DUF812: Protein of un 94.2 4.7 0.0001 48.2 21.1 24 123-146 52-75 (594)
113 KOG0612 Rho-associated, coiled 94.1 6.8 0.00015 49.3 22.4 74 49-146 188-275 (1317)
114 TIGR03185 DNA_S_dndD DNA sulfu 94.0 7.5 0.00016 47.1 22.9 78 282-362 207-287 (650)
115 KOG1029 Endocytic adaptor prot 93.9 16 0.00035 44.1 24.0 40 381-420 416-455 (1118)
116 PF00893 Multi_Drug_Res: Small 93.9 0.35 7.5E-06 43.5 8.6 56 601-656 37-93 (93)
117 PF09726 Macoilin: Transmembra 93.8 8.5 0.00018 46.9 22.6 90 338-464 546-639 (697)
118 PRK13499 rhamnose-proton sympo 93.8 5.8 0.00013 44.3 19.5 97 594-690 74-191 (345)
119 PF04657 DUF606: Protein of un 93.6 2.8 6E-05 40.6 14.8 115 544-662 18-138 (138)
120 KOG2765 Predicted membrane pro 93.6 0.62 1.3E-05 51.7 11.3 144 525-670 246-395 (416)
121 PRK04778 septation ring format 93.5 3 6.6E-05 49.6 18.1 32 282-313 346-377 (569)
122 COG1579 Zn-ribbon protein, pos 93.5 10 0.00022 40.2 19.7 43 393-435 147-189 (239)
123 PF12128 DUF3584: Protein of u 93.5 7 0.00015 50.7 22.5 68 287-354 721-788 (1201)
124 PF00038 Filament: Intermediat 93.4 14 0.0003 40.2 24.1 79 283-368 67-148 (312)
125 KOG0971 Microtubule-associated 93.4 11 0.00024 46.1 21.7 95 271-372 312-410 (1243)
126 COG5185 HEC1 Protein involved 93.3 19 0.00041 41.3 29.0 43 104-146 108-150 (622)
127 COG4942 Membrane-bound metallo 93.2 19 0.0004 41.1 24.3 135 337-491 94-244 (420)
128 KOG0977 Nuclear envelope prote 93.2 14 0.0003 43.6 22.0 40 378-417 272-311 (546)
129 COG2962 RarD Predicted permeas 92.8 2.4 5.2E-05 45.8 14.1 129 532-665 152-283 (293)
130 PF05701 WEMBL: Weak chloropla 92.7 26 0.00056 41.4 24.0 130 284-436 235-364 (522)
131 PF10168 Nup88: Nuclear pore c 92.6 1.9 4.1E-05 52.6 14.7 75 337-412 639-716 (717)
132 PF06160 EzrA: Septation ring 92.6 18 0.00039 43.1 22.7 126 283-429 43-170 (560)
133 KOG4643 Uncharacterized coiled 92.6 15 0.00032 45.7 21.5 129 339-481 490-625 (1195)
134 smart00787 Spc7 Spc7 kinetocho 92.6 9.2 0.0002 42.1 18.7 108 304-419 131-242 (312)
135 TIGR03017 EpsF chain length de 92.5 23 0.0005 40.4 23.3 31 243-273 172-202 (444)
136 PF05010 TACC: Transforming ac 92.5 3 6.5E-05 43.2 13.9 100 378-488 48-160 (207)
137 COG4942 Membrane-bound metallo 92.5 8.8 0.00019 43.6 18.6 124 338-470 39-187 (420)
138 PF15397 DUF4618: Domain of un 92.4 18 0.00038 38.8 20.6 162 258-419 40-224 (258)
139 PF10639 UPF0546: Uncharacteri 92.4 0.31 6.8E-06 45.5 6.1 70 593-663 42-112 (113)
140 KOG0804 Cytoplasmic Zn-finger 92.4 3.2 6.8E-05 47.0 14.8 83 283-365 324-410 (493)
141 KOG4674 Uncharacterized conser 92.4 26 0.00055 46.6 24.6 45 374-418 798-842 (1822)
142 PF10168 Nup88: Nuclear pore c 92.4 7.6 0.00016 47.5 19.3 78 340-422 589-666 (717)
143 KOG0964 Structural maintenance 92.3 18 0.0004 44.8 21.7 37 385-421 390-426 (1200)
144 PRK04863 mukB cell division pr 92.3 18 0.00039 47.8 23.6 20 258-277 232-251 (1486)
145 TIGR03007 pepcterm_ChnLen poly 92.1 26 0.00057 40.7 23.0 70 243-312 162-232 (498)
146 KOG0963 Transcription factor/C 92.1 31 0.00068 40.9 24.5 43 438-491 315-357 (629)
147 PRK09039 hypothetical protein; 91.9 10 0.00022 42.3 18.4 102 248-349 45-149 (343)
148 PRK04863 mukB cell division pr 91.9 34 0.00074 45.3 25.5 93 267-368 294-386 (1486)
149 KOG0994 Extracellular matrix g 91.9 45 0.00097 42.3 27.0 74 346-421 1586-1659(1758)
150 PRK10884 SH3 domain-containing 91.6 2.5 5.4E-05 43.7 12.3 45 280-324 89-133 (206)
151 TIGR00803 nst UDP-galactose tr 91.4 2.8 6.2E-05 43.2 12.6 63 599-662 158-221 (222)
152 KOG0964 Structural maintenance 91.3 44 0.00094 41.7 23.4 34 386-419 333-366 (1200)
153 KOG2922 Uncharacterized conser 91.3 1.5 3.3E-05 47.9 10.5 68 598-665 68-136 (335)
154 KOG0979 Structural maintenance 91.2 33 0.00072 42.8 22.5 106 382-488 305-418 (1072)
155 COG0419 SbcC ATPase involved i 90.9 54 0.0012 41.4 25.7 15 473-487 721-735 (908)
156 PF00261 Tropomyosin: Tropomyo 90.7 22 0.00048 37.4 18.7 30 285-314 79-108 (237)
157 TIGR01005 eps_transp_fam exopo 90.5 52 0.0011 40.6 27.6 33 338-370 238-270 (754)
158 KOG4674 Uncharacterized conser 90.5 63 0.0014 43.2 25.3 136 291-429 798-953 (1822)
159 smart00787 Spc7 Spc7 kinetocho 90.5 5.6 0.00012 43.8 14.3 50 318-367 206-255 (312)
160 PF15619 Lebercilin: Ciliary p 90.4 23 0.00051 36.3 17.9 69 336-418 117-187 (194)
161 PF08317 Spc7: Spc7 kinetochor 89.9 5 0.00011 44.4 13.5 61 308-371 183-243 (325)
162 KOG4673 Transcription factor T 89.9 51 0.0011 39.6 21.7 87 276-373 445-531 (961)
163 KOG0612 Rho-associated, coiled 89.8 70 0.0015 41.0 24.3 20 451-470 753-772 (1317)
164 KOG4438 Centromere-associated 89.5 43 0.00093 38.1 20.8 94 284-386 128-221 (446)
165 PF09726 Macoilin: Transmembra 89.4 16 0.00035 44.5 18.3 103 388-499 498-615 (697)
166 TIGR03319 YmdA_YtgF conserved 89.4 21 0.00045 42.1 18.7 26 381-406 122-147 (514)
167 KOG0980 Actin-binding protein 89.3 56 0.0012 40.3 22.0 72 347-420 413-484 (980)
168 TIGR01843 type_I_hlyD type I s 89.3 42 0.00091 37.7 21.3 7 374-380 193-199 (423)
169 PF13514 AAA_27: AAA domain 89.1 33 0.00071 44.3 21.9 104 313-419 215-327 (1111)
170 PRK10929 putative mechanosensi 89.1 81 0.0017 40.7 42.9 15 671-685 629-643 (1109)
171 PF04111 APG6: Autophagy prote 89.0 5.5 0.00012 43.9 12.9 16 339-354 66-81 (314)
172 COG0419 SbcC ATPase involved i 89.0 75 0.0016 40.1 25.1 55 374-428 315-369 (908)
173 KOG4572 Predicted DNA-binding 88.9 66 0.0014 39.4 25.6 41 379-419 1067-1109(1424)
174 PF15397 DUF4618: Domain of un 88.8 37 0.0008 36.4 19.0 22 391-412 203-224 (258)
175 COG5006 rhtA Threonine/homoser 88.2 3.2 6.9E-05 44.1 9.7 99 560-665 178-282 (292)
176 PF08317 Spc7: Spc7 kinetochor 88.0 19 0.0004 39.9 16.3 54 316-369 209-262 (325)
177 PF10146 zf-C4H2: Zinc finger- 87.9 15 0.00033 38.7 14.7 19 335-353 51-69 (230)
178 KOG1666 V-SNARE [Intracellular 87.9 37 0.0008 35.3 19.2 55 345-400 37-91 (220)
179 PF10186 Atg14: UV radiation r 87.8 19 0.00041 38.5 16.0 39 335-373 68-106 (302)
180 PF06800 Sugar_transport: Suga 87.7 9.4 0.0002 41.2 13.2 67 595-662 197-268 (269)
181 COG4913 Uncharacterized protei 87.5 54 0.0012 39.7 19.8 76 358-435 729-808 (1104)
182 PF15556 Zwint: ZW10 interacto 87.4 32 0.0007 35.3 15.7 128 294-425 55-185 (252)
183 TIGR02680 conserved hypothetic 87.4 66 0.0014 42.5 23.2 206 249-468 756-963 (1353)
184 PF08172 CASP_C: CASP C termin 87.2 3.4 7.3E-05 44.0 9.5 43 376-418 88-130 (248)
185 COG2510 Predicted membrane pro 87.1 4.7 0.0001 38.6 9.2 84 675-761 5-88 (140)
186 PF04156 IncA: IncA protein; 86.6 30 0.00065 34.8 15.8 7 299-305 103-109 (191)
187 PRK12704 phosphodiesterase; Pr 86.5 39 0.00085 39.9 18.6 13 305-317 64-76 (520)
188 TIGR00634 recN DNA repair prot 86.3 62 0.0013 38.6 20.5 26 346-371 214-239 (563)
189 PF06730 FAM92: FAM92 protein; 86.2 6.4 0.00014 41.0 10.5 112 283-404 74-187 (219)
190 PF03962 Mnd1: Mnd1 family; I 86.1 8.8 0.00019 39.2 11.5 103 283-392 61-167 (188)
191 KOG3091 Nuclear pore complex, 85.9 5.8 0.00013 45.6 10.9 62 357-418 414-475 (508)
192 KOG0976 Rho/Rac1-interacting s 85.8 96 0.0021 38.0 20.9 107 262-372 84-190 (1265)
193 PF09744 Jnk-SapK_ap_N: JNK_SA 85.6 12 0.00025 37.3 11.7 116 256-397 43-158 (158)
194 PF05911 DUF869: Plant protein 85.5 24 0.00051 43.5 16.5 158 257-419 590-757 (769)
195 PF03904 DUF334: Domain of unk 85.3 33 0.00071 35.9 15.0 76 340-422 74-154 (230)
196 PF05884 ZYG-11_interact: Inte 85.3 56 0.0012 35.6 17.4 28 524-551 101-128 (299)
197 TIGR01005 eps_transp_fam exopo 85.3 58 0.0013 40.1 20.3 71 244-314 196-267 (754)
198 COG3238 Uncharacterized protei 85.3 24 0.00052 34.8 13.5 115 545-663 23-144 (150)
199 PRK00106 hypothetical protein; 85.3 56 0.0012 38.7 18.9 15 562-576 351-365 (535)
200 KOG1937 Uncharacterized conser 85.0 79 0.0017 36.3 22.3 81 337-417 389-484 (521)
201 PF06120 Phage_HK97_TLTM: Tail 84.9 27 0.00058 38.3 15.0 121 345-481 42-168 (301)
202 KOG0980 Actin-binding protein 84.7 1.1E+02 0.0025 37.9 25.2 90 355-449 463-552 (980)
203 PF04156 IncA: IncA protein; 84.4 12 0.00026 37.7 11.7 26 286-311 97-122 (191)
204 COG5185 HEC1 Protein involved 84.1 56 0.0012 37.6 17.2 18 471-488 410-427 (622)
205 PRK12705 hypothetical protein; 83.9 59 0.0013 38.3 18.2 27 300-326 54-80 (508)
206 KOG4421 Uncharacterized conser 83.7 27 0.00059 38.8 14.2 93 411-503 108-212 (637)
207 PF10498 IFT57: Intra-flagella 83.6 34 0.00074 38.5 15.6 70 70-145 38-112 (359)
208 PF13094 CENP-Q: CENP-Q, a CEN 83.6 18 0.00039 35.6 12.2 86 334-426 59-160 (160)
209 PRK00409 recombination and DNA 83.5 15 0.00032 45.6 13.9 14 5-18 25-38 (782)
210 PRK09343 prefoldin subunit bet 83.4 35 0.00075 32.3 13.4 99 333-434 10-117 (121)
211 PF00892 EamA: EamA-like trans 83.3 1.9 4.1E-05 39.1 4.8 44 683-729 1-44 (126)
212 PF11932 DUF3450: Protein of u 82.6 18 0.00039 38.4 12.5 46 283-328 23-68 (251)
213 cd09238 V_Alix_like_1 Protein- 82.4 88 0.0019 34.9 23.4 82 379-465 196-279 (339)
214 COG0497 RecN ATPase involved i 82.4 1.2E+02 0.0025 36.2 20.1 168 249-420 171-343 (557)
215 PF15070 GOLGA2L5: Putative go 82.3 1.2E+02 0.0027 36.6 20.5 28 283-310 14-41 (617)
216 PF10234 Cluap1: Clusterin-ass 82.3 18 0.00039 38.9 12.2 32 115-146 2-33 (267)
217 PF10498 IFT57: Intra-flagella 81.8 16 0.00034 41.1 12.1 91 271-372 232-322 (359)
218 KOG1962 B-cell receptor-associ 81.7 12 0.00026 39.0 10.2 57 344-416 158-214 (216)
219 PRK09841 cryptic autophosphory 81.3 11 0.00023 46.4 11.6 32 242-273 267-298 (726)
220 TIGR00844 c_cpa1 na(+)/h(+) an 81.2 1.3E+02 0.0027 37.6 20.1 14 555-568 38-51 (810)
221 KOG0995 Centromere-associated 81.1 1.3E+02 0.0027 35.8 27.2 91 46-146 77-171 (581)
222 PRK09039 hypothetical protein; 81.0 99 0.0022 34.6 18.8 83 381-480 116-199 (343)
223 PF09789 DUF2353: Uncharacteri 80.8 39 0.00085 37.3 14.4 133 285-426 66-227 (319)
224 PF05008 V-SNARE: Vesicle tran 80.8 9 0.00019 33.0 7.9 54 344-398 25-78 (79)
225 KOG0018 Structural maintenance 80.7 1.7E+02 0.0038 37.1 24.4 80 341-423 266-345 (1141)
226 KOG0243 Kinesin-like protein [ 80.5 1.8E+02 0.0038 37.1 21.2 11 316-326 483-493 (1041)
227 KOG4593 Mitotic checkpoint pro 80.4 1.5E+02 0.0031 36.1 20.3 24 404-427 277-300 (716)
228 KOG0018 Structural maintenance 80.3 1.5E+02 0.0032 37.7 20.2 33 282-314 225-257 (1141)
229 PF09762 KOG2701: Coiled-coil 80.2 7.5 0.00016 39.5 8.1 96 46-146 3-102 (182)
230 TIGR01069 mutS2 MutS2 family p 80.2 20 0.00044 44.3 13.4 6 115-120 136-141 (771)
231 PF10186 Atg14: UV radiation r 80.1 65 0.0014 34.4 16.0 35 283-317 55-89 (302)
232 PF13949 ALIX_LYPXL_bnd: ALIX 80.0 91 0.002 33.5 21.4 131 333-465 83-232 (296)
233 COG4477 EzrA Negative regulato 79.8 1.3E+02 0.0029 35.3 23.3 128 338-487 355-484 (570)
234 KOG0946 ER-Golgi vesicle-tethe 79.8 1.3E+02 0.0028 37.1 19.0 80 340-420 681-762 (970)
235 PF12718 Tropomyosin_1: Tropom 79.3 58 0.0013 31.8 13.7 29 341-369 112-140 (143)
236 COG5070 VRG4 Nucleotide-sugar 79.1 8.6 0.00019 40.2 8.1 126 530-658 158-289 (309)
237 KOG0239 Kinesin (KAR3 subfamil 79.0 30 0.00066 42.1 14.0 94 375-468 301-437 (670)
238 PRK11519 tyrosine kinase; Prov 78.9 1.6E+02 0.0035 36.2 20.6 36 524-561 424-459 (719)
239 PF05701 WEMBL: Weak chloropla 78.3 1.5E+02 0.0033 35.1 24.9 46 389-434 289-334 (522)
240 TIGR00634 recN DNA repair prot 77.9 1.5E+02 0.0032 35.4 19.4 9 74-82 38-46 (563)
241 COG2433 Uncharacterized conser 77.8 82 0.0018 37.5 16.4 95 377-488 418-512 (652)
242 KOG1444 Nucleotide-sugar trans 77.5 8.8 0.00019 42.0 8.1 134 529-664 159-299 (314)
243 KOG3764 Vesicular amine transp 77.3 19 0.00042 41.1 10.9 179 549-728 219-425 (464)
244 PF10473 CENP-F_leu_zip: Leuci 77.3 75 0.0016 31.0 14.6 24 285-308 39-62 (140)
245 TIGR02338 gimC_beta prefoldin, 76.8 56 0.0012 30.2 12.3 89 335-428 8-107 (110)
246 PF13166 AAA_13: AAA domain 76.6 1.9E+02 0.0041 35.3 24.3 65 359-423 341-405 (712)
247 TIGR00688 rarD rarD protein. T 76.6 14 0.00031 38.7 9.5 50 673-725 2-51 (256)
248 PF05557 MAD: Mitotic checkpoi 76.6 0.81 1.8E-05 55.9 0.0 41 456-496 259-299 (722)
249 PF15290 Syntaphilin: Golgi-lo 76.6 18 0.0004 38.8 9.9 40 357-412 123-162 (305)
250 KOG1441 Glucose-6-phosphate/ph 76.2 5.3 0.00012 44.0 6.2 138 525-665 162-307 (316)
251 PF10267 Tmemb_cc2: Predicted 76.2 78 0.0017 36.1 15.4 93 392-484 209-318 (395)
252 KOG1962 B-cell receptor-associ 76.1 10 0.00022 39.5 7.7 30 341-370 183-212 (216)
253 PF05276 SH3BP5: SH3 domain-bi 76.0 1.1E+02 0.0025 32.5 22.7 87 401-500 148-238 (239)
254 TIGR02680 conserved hypothetic 75.8 2.7E+02 0.0059 37.0 22.4 26 345-370 298-323 (1353)
255 KOG0249 LAR-interacting protei 75.6 72 0.0016 38.6 15.2 10 282-291 161-170 (916)
256 PF08614 ATG16: Autophagy prot 75.6 26 0.00056 35.8 10.7 29 283-311 115-143 (194)
257 PF05600 DUF773: Protein of un 75.5 67 0.0015 37.9 15.3 74 335-417 423-496 (507)
258 PRK12704 phosphodiesterase; Pr 74.9 1.9E+02 0.004 34.4 21.8 44 438-481 155-206 (520)
259 PF08614 ATG16: Autophagy prot 74.8 22 0.00048 36.3 9.9 85 338-431 96-180 (194)
260 PRK10869 recombination and rep 74.8 1.9E+02 0.0042 34.5 22.0 26 346-371 210-235 (553)
261 PF09787 Golgin_A5: Golgin sub 74.5 1.3E+02 0.0028 35.5 17.4 68 350-425 361-429 (511)
262 PRK00409 recombination and DNA 74.4 81 0.0018 39.2 16.4 14 98-111 120-133 (782)
263 PLN03229 acetyl-coenzyme A car 74.3 2.2E+02 0.0048 35.0 25.3 87 258-344 431-545 (762)
264 PF04012 PspA_IM30: PspA/IM30 73.9 1.1E+02 0.0025 31.5 16.1 85 283-367 36-121 (221)
265 PF11559 ADIP: Afadin- and alp 73.8 91 0.002 30.3 14.0 76 285-368 74-150 (151)
266 PF07857 DUF1632: CEO family ( 73.6 45 0.00097 35.8 12.1 100 558-665 27-134 (254)
267 TIGR01843 type_I_hlyD type I s 73.5 85 0.0018 35.2 15.3 51 376-426 139-189 (423)
268 PF05557 MAD: Mitotic checkpoi 73.4 1.1 2.4E-05 54.8 0.0 22 475-496 340-361 (722)
269 PF04342 DUF486: Protein of un 73.3 28 0.0006 32.3 8.9 61 603-663 45-106 (108)
270 COG4026 Uncharacterized protei 73.2 68 0.0015 33.5 12.6 34 337-370 170-203 (290)
271 TIGR03545 conserved hypothetic 73.2 30 0.00064 41.2 11.7 29 340-368 215-243 (555)
272 PF10146 zf-C4H2: Zinc finger- 73.0 53 0.0012 34.7 12.4 34 335-368 9-42 (230)
273 PF00769 ERM: Ezrin/radixin/mo 73.0 84 0.0018 33.4 14.1 52 377-428 78-129 (246)
274 COG4026 Uncharacterized protei 72.7 15 0.00033 38.1 7.9 35 338-372 157-191 (290)
275 KOG2077 JNK/SAPK-associated pr 72.2 1.1E+02 0.0023 36.2 15.2 26 395-420 399-424 (832)
276 PRK15048 methyl-accepting chem 72.1 2.1E+02 0.0045 33.7 20.6 66 381-446 343-419 (553)
277 PF05266 DUF724: Protein of un 72.0 53 0.0011 33.7 11.8 49 255-311 61-109 (190)
278 PF04657 DUF606: Protein of un 71.6 26 0.00057 33.8 9.1 83 674-760 2-84 (138)
279 PRK04288 antiholin-like protei 71.5 85 0.0018 33.2 13.3 20 534-553 11-30 (232)
280 PF06818 Fez1: Fez1; InterPro 71.4 1.3E+02 0.0029 31.1 16.4 51 318-368 12-62 (202)
281 PF04111 APG6: Autophagy prote 71.4 45 0.00098 36.8 12.0 12 397-408 122-133 (314)
282 PF10805 DUF2730: Protein of u 71.0 55 0.0012 30.2 10.6 30 343-372 34-63 (106)
283 PRK09841 cryptic autophosphory 70.8 2.1E+02 0.0045 35.3 18.7 62 288-349 257-323 (726)
284 PF13863 DUF4200: Domain of un 70.7 83 0.0018 29.4 12.2 101 381-481 7-108 (126)
285 KOG0243 Kinesin-like protein [ 70.5 1.6E+02 0.0034 37.5 17.2 23 401-423 538-560 (1041)
286 COG2433 Uncharacterized conser 70.3 46 0.00099 39.6 12.0 86 283-369 421-506 (652)
287 KOG4403 Cell surface glycoprot 70.3 86 0.0019 35.8 13.5 48 377-424 338-386 (575)
288 KOG4367 Predicted Zn-finger pr 70.0 51 0.0011 37.4 11.8 143 296-470 256-404 (699)
289 TIGR01069 mutS2 MutS2 family p 69.9 1.2E+02 0.0025 37.9 16.2 24 292-315 498-521 (771)
290 PRK11519 tyrosine kinase; Prov 69.6 72 0.0016 39.2 14.4 30 242-271 267-296 (719)
291 KOG0979 Structural maintenance 69.5 3.2E+02 0.0069 34.7 20.3 200 282-503 186-391 (1072)
292 PF06379 RhaT: L-rhamnose-prot 69.4 33 0.00071 38.2 10.2 102 593-694 73-194 (344)
293 COG3206 GumC Uncharacterized p 68.7 2.1E+02 0.0046 33.0 17.3 69 249-317 202-272 (458)
294 PF14772 NYD-SP28: Sperm tail 68.5 31 0.00068 31.5 8.5 30 283-312 20-49 (104)
295 PF09755 DUF2046: Uncharacteri 68.4 1.9E+02 0.0042 31.8 21.3 41 451-491 233-274 (310)
296 PF13851 GAS: Growth-arrest sp 67.9 1.5E+02 0.0033 30.5 16.4 151 286-449 36-190 (201)
297 PF13949 ALIX_LYPXL_bnd: ALIX 67.8 1.8E+02 0.0039 31.2 21.3 120 283-402 83-225 (296)
298 PF14643 DUF4455: Domain of un 67.7 1.8E+02 0.004 33.9 16.6 109 300-425 350-463 (473)
299 PF15450 DUF4631: Domain of un 67.4 1.7E+02 0.0036 34.5 15.5 150 266-419 333-491 (531)
300 TIGR03319 YmdA_YtgF conserved 67.2 2.7E+02 0.0058 33.0 22.2 44 438-481 149-200 (514)
301 PF01920 Prefoldin_2: Prefoldi 66.8 88 0.0019 28.0 11.1 58 359-419 30-100 (106)
302 KOG0804 Cytoplasmic Zn-finger 66.6 90 0.002 35.9 12.9 28 452-486 440-467 (493)
303 KOG0962 DNA repair protein RAD 66.4 4.1E+02 0.0089 34.9 22.1 89 282-370 817-911 (1294)
304 PF04142 Nuc_sug_transp: Nucle 66.3 1.3E+02 0.0028 32.0 13.7 124 529-655 116-243 (244)
305 PF00521 DNA_topoisoIV: DNA gy 65.9 1E+02 0.0022 35.4 13.9 114 299-432 304-424 (426)
306 KOG1899 LAR transmembrane tyro 65.9 3E+02 0.0065 33.1 17.9 47 287-333 128-175 (861)
307 KOG0971 Microtubule-associated 65.8 3.6E+02 0.0077 34.0 29.4 240 238-490 227-516 (1243)
308 PF12718 Tropomyosin_1: Tropom 65.5 1.4E+02 0.003 29.1 13.4 34 337-370 35-68 (143)
309 PF13863 DUF4200: Domain of un 65.3 1.2E+02 0.0026 28.3 14.3 46 376-421 62-107 (126)
310 TIGR01667 YCCS_YHJK integral m 64.9 3.4E+02 0.0074 33.4 26.2 53 438-490 277-341 (701)
311 PF15254 CCDC14: Coiled-coil d 64.8 2.7E+02 0.0059 34.3 17.0 63 345-416 495-557 (861)
312 PF05297 Herpes_LMP1: Herpesvi 64.4 2.2 4.8E-05 45.6 0.0 75 635-710 66-143 (381)
313 PF13870 DUF4201: Domain of un 64.1 1.6E+02 0.0035 29.4 19.5 124 343-468 48-173 (177)
314 PF05622 HOOK: HOOK protein; 64.0 2.2 4.9E-05 52.1 0.0 93 329-421 317-410 (713)
315 COG4717 Uncharacterized conser 64.0 3.8E+02 0.0082 33.6 23.6 173 249-437 188-365 (984)
316 TIGR03090 SASP_tlp small, acid 63.9 33 0.00072 29.4 6.8 41 283-324 7-48 (70)
317 PF05659 RPW8: Arabidopsis bro 63.8 46 0.00099 32.7 9.0 91 312-419 47-141 (147)
318 COG5293 Predicted ATPase [Gene 63.6 2.9E+02 0.0062 32.1 21.7 183 266-487 241-454 (591)
319 PF12325 TMF_TATA_bd: TATA ele 62.7 1.4E+02 0.0031 28.3 13.1 83 285-368 24-106 (120)
320 TIGR00659 conserved hypothetic 62.4 1.7E+02 0.0038 30.8 13.5 32 533-564 5-38 (226)
321 PF15272 BBP1_C: Spindle pole 61.8 2E+02 0.0043 29.7 13.5 20 374-393 132-151 (196)
322 PF11594 Med28: Mediator compl 61.8 89 0.0019 29.0 9.8 83 290-397 3-85 (106)
323 KOG0249 LAR-interacting protei 61.2 2.7E+02 0.0059 34.0 15.9 11 450-460 374-384 (916)
324 COG4717 Uncharacterized conser 61.1 4.2E+02 0.0092 33.2 21.7 130 283-412 570-703 (984)
325 PF02554 CstA: Carbon starvati 61.1 1.1E+02 0.0025 34.5 12.5 40 629-668 168-209 (376)
326 PRK10884 SH3 domain-containing 60.9 1.2E+02 0.0026 31.5 12.0 46 254-302 91-136 (206)
327 PRK11281 hypothetical protein; 60.9 4.9E+02 0.011 33.9 48.9 54 361-432 340-393 (1113)
328 PF13851 GAS: Growth-arrest sp 60.7 2.1E+02 0.0045 29.5 20.2 23 381-403 150-172 (201)
329 PF09789 DUF2353: Uncharacteri 60.6 2.7E+02 0.0059 30.9 17.5 136 287-429 33-181 (319)
330 KOG2077 JNK/SAPK-associated pr 60.2 40 0.00086 39.6 8.9 18 374-391 406-423 (832)
331 PF06785 UPF0242: Uncharacteri 60.2 2.8E+02 0.0061 30.9 16.3 33 338-373 202-234 (401)
332 TIGR03752 conj_TIGR03752 integ 60.2 50 0.0011 38.3 9.7 20 644-663 363-384 (472)
333 PF14662 CCDC155: Coiled-coil 60.0 2.1E+02 0.0046 29.4 20.8 47 384-430 98-147 (193)
334 PF10211 Ax_dynein_light: Axon 59.7 1.8E+02 0.004 29.7 12.9 21 400-420 168-188 (189)
335 PF09728 Taxilin: Myosin-like 59.7 2.8E+02 0.006 30.6 21.7 43 379-424 140-182 (309)
336 KOG4510 Permease of the drug/m 59.7 11 0.00024 40.4 4.2 65 593-658 253-318 (346)
337 PF05791 Bacillus_HBL: Bacillu 59.7 2E+02 0.0044 29.1 14.0 114 284-412 66-180 (184)
338 PF12761 End3: Actin cytoskele 59.6 81 0.0017 32.5 10.1 28 337-364 167-194 (195)
339 KOG4302 Microtubule-associated 59.2 2.1E+02 0.0046 34.8 15.0 115 298-421 18-143 (660)
340 PF07058 Myosin_HC-like: Myosi 59.2 81 0.0018 34.5 10.4 41 379-419 88-132 (351)
341 PF05911 DUF869: Plant protein 59.0 2.1E+02 0.0045 35.6 15.3 45 283-327 55-103 (769)
342 PF02403 Seryl_tRNA_N: Seryl-t 58.8 78 0.0017 28.9 9.2 74 336-429 28-101 (108)
343 PF03962 Mnd1: Mnd1 family; I 58.8 1.2E+02 0.0026 30.9 11.4 59 345-408 104-162 (188)
344 PF09852 DUF2079: Predicted me 58.7 2.2E+02 0.0047 32.9 14.9 85 555-651 56-140 (449)
345 PF10475 DUF2450: Protein of u 58.7 2.7E+02 0.0058 30.2 19.2 100 300-418 37-138 (291)
346 PRK03830 small acid-soluble sp 58.3 63 0.0014 28.0 7.6 25 283-307 8-32 (73)
347 PRK05658 RNA polymerase sigma 58.3 2.9E+02 0.0063 33.4 16.4 76 338-418 272-357 (619)
348 PRK10246 exonuclease subunit S 58.3 5.2E+02 0.011 33.4 23.4 30 285-314 559-588 (1047)
349 PF15619 Lebercilin: Ciliary p 58.2 2.3E+02 0.0049 29.2 19.1 17 404-420 120-136 (194)
350 PF12329 TMF_DNA_bd: TATA elem 57.8 63 0.0014 28.0 7.8 50 349-404 3-52 (74)
351 PRK03947 prefoldin subunit alp 57.6 1.2E+02 0.0027 29.0 10.8 37 379-415 99-135 (140)
352 cd08915 V_Alix_like Protein-in 57.4 3.1E+02 0.0066 30.4 17.3 86 283-369 132-235 (342)
353 PRK00106 hypothetical protein; 57.3 4E+02 0.0087 31.8 22.2 43 439-481 171-221 (535)
354 PF10481 CENP-F_N: Cenp-F N-te 57.0 1.8E+02 0.0039 31.5 12.3 40 381-423 70-109 (307)
355 KOG4460 Nuclear pore complex, 57.0 2.9E+02 0.0064 32.7 14.9 31 296-326 635-665 (741)
356 cd08915 V_Alix_like Protein-in 56.6 3.1E+02 0.0068 30.3 25.0 132 331-467 130-284 (342)
357 PF07851 TMPIT: TMPIT-like pro 56.0 45 0.00097 37.1 8.2 75 555-635 145-219 (330)
358 COG1340 Uncharacterized archae 55.9 3.1E+02 0.0068 30.1 25.5 160 299-464 31-203 (294)
359 COG3104 PTR2 Dipeptide/tripept 55.7 4.1E+02 0.0089 31.4 19.5 30 548-577 177-206 (498)
360 PF05977 MFS_3: Transmembrane 55.6 4.1E+02 0.009 31.4 18.7 76 617-693 251-329 (524)
361 KOG2234 Predicted UDP-galactos 55.6 3.4E+02 0.0074 30.5 14.9 136 525-664 182-321 (345)
362 PRK10263 DNA translocase FtsK; 55.5 50 0.0011 42.9 9.5 14 629-642 85-99 (1355)
363 COG3296 Uncharacterized protei 55.3 70 0.0015 30.7 8.1 65 618-683 41-107 (143)
364 COG4975 GlcU Putative glucose 55.2 4.3 9.3E-05 43.0 0.3 124 597-724 63-199 (288)
365 KOG2129 Uncharacterized conser 54.8 80 0.0017 35.8 9.8 144 257-421 150-304 (552)
366 PF06570 DUF1129: Protein of u 54.8 2.6E+02 0.0056 28.7 13.5 12 635-646 191-202 (206)
367 KOG0978 E3 ubiquitin ligase in 54.7 4.9E+02 0.011 32.0 21.5 206 281-487 386-624 (698)
368 cd09236 V_AnPalA_UmRIM20_like 54.6 3.5E+02 0.0076 30.3 20.2 72 284-356 134-221 (353)
369 PF01442 Apolipoprotein: Apoli 54.5 2.2E+02 0.0047 27.8 22.3 8 456-463 168-175 (202)
370 PRK09793 methyl-accepting prot 54.5 4.2E+02 0.0091 31.2 20.6 56 382-437 342-407 (533)
371 PF09602 PhaP_Bmeg: Polyhydrox 54.2 2.4E+02 0.0053 28.3 12.9 66 358-435 44-111 (165)
372 KOG0962 DNA repair protein RAD 54.1 6.4E+02 0.014 33.2 25.7 28 441-468 1002-1029(1294)
373 PF00846 Hanta_nucleocap: Hant 54.1 57 0.0012 36.7 8.5 72 337-409 2-73 (428)
374 PF03357 Snf7: Snf7; InterPro 54.0 1.4E+02 0.003 29.1 10.8 30 395-424 104-133 (171)
375 COG4682 Predicted membrane pro 53.7 53 0.0011 31.1 7.0 38 651-688 15-56 (128)
376 TIGR02921 PEP_integral PEP-CTE 53.7 3E+02 0.0066 33.0 14.4 41 603-643 60-102 (952)
377 PF02994 Transposase_22: L1 tr 53.4 24 0.00053 39.8 5.9 40 379-418 142-181 (370)
378 PF11802 CENP-K: Centromere-as 53.3 3.3E+02 0.0071 29.5 15.3 13 411-423 174-186 (268)
379 PF05483 SCP-1: Synaptonemal c 53.2 5.1E+02 0.011 31.7 24.0 233 244-482 407-665 (786)
380 PTZ00121 MAEBL; Provisional 53.1 6.8E+02 0.015 33.5 18.1 26 286-311 1635-1660(2084)
381 PF07889 DUF1664: Protein of u 53.0 1.5E+02 0.0032 28.5 10.2 44 376-419 63-106 (126)
382 PTZ00121 MAEBL; Provisional 52.9 7.1E+02 0.015 33.3 19.8 24 294-317 1629-1652(2084)
383 COG3206 GumC Uncharacterized p 52.9 1.4E+02 0.003 34.5 12.2 33 336-368 365-397 (458)
384 PRK10865 protein disaggregatio 52.9 1.9E+02 0.0041 36.4 14.1 57 258-314 412-469 (857)
385 TIGR02357 thia_yuaJ probable p 52.8 2E+02 0.0043 29.3 11.8 27 594-620 2-28 (183)
386 PF02487 CLN3: CLN3 protein; 52.4 2.3E+02 0.005 32.5 13.4 64 617-680 57-124 (402)
387 PRK10869 recombination and rep 52.3 4.8E+02 0.01 31.2 19.9 60 351-419 299-358 (553)
388 PF00769 ERM: Ezrin/radixin/mo 52.1 3.2E+02 0.0069 29.1 16.5 47 376-422 84-130 (246)
389 PF08647 BRE1: BRE1 E3 ubiquit 51.6 1.9E+02 0.004 26.2 10.4 51 378-428 28-78 (96)
390 PF07445 priB_priC: Primosomal 51.5 2.2E+02 0.0047 28.7 11.8 48 378-427 116-163 (173)
391 KOG0288 WD40 repeat protein Ti 51.5 1.4E+02 0.0031 34.0 11.1 18 308-325 33-50 (459)
392 PF07889 DUF1664: Protein of u 51.4 2.3E+02 0.005 27.2 11.4 77 293-369 45-121 (126)
393 PF09728 Taxilin: Myosin-like 51.0 3.8E+02 0.0082 29.6 24.2 73 377-466 219-298 (309)
394 PF03741 TerC: Integral membra 50.4 2.9E+02 0.0063 28.1 14.7 62 600-662 116-180 (183)
395 PF07926 TPR_MLP1_2: TPR/MLP1/ 50.3 2.3E+02 0.0051 27.0 16.0 127 321-476 1-131 (132)
396 COG3883 Uncharacterized protei 49.9 3.7E+02 0.008 29.1 15.9 44 338-384 81-124 (265)
397 PF14936 p53-inducible11: Tumo 49.8 2.5E+02 0.0054 28.4 11.3 80 671-762 95-174 (179)
398 PLN02320 seryl-tRNA synthetase 49.6 83 0.0018 37.0 9.5 86 284-370 74-163 (502)
399 KOG0517 Beta-spectrin [Cytoske 49.5 8.7E+02 0.019 33.4 24.0 167 297-469 1347-1542(2473)
400 PF09731 Mitofilin: Mitochondr 49.0 5.3E+02 0.012 30.7 25.4 29 282-310 249-277 (582)
401 PLN03229 acetyl-coenzyme A car 48.9 2E+02 0.0043 35.4 12.5 77 286-368 648-729 (762)
402 PF01540 Lipoprotein_7: Adhesi 48.9 3.8E+02 0.0082 29.0 15.9 71 283-354 195-265 (353)
403 PRK09577 multidrug efflux prot 48.7 2.7E+02 0.0059 35.9 14.8 48 612-661 882-932 (1032)
404 PF04849 HAP1_N: HAP1 N-termin 48.6 4.1E+02 0.009 29.3 15.3 70 385-464 217-286 (306)
405 PF10046 BLOC1_2: Biogenesis o 48.6 2.1E+02 0.0046 26.0 11.3 36 335-370 64-99 (99)
406 PF00873 ACR_tran: AcrB/AcrD/A 48.6 1.4E+02 0.0031 38.1 12.4 47 608-655 875-924 (1021)
407 PF09403 FadA: Adhesion protei 48.4 2.6E+02 0.0056 26.9 11.3 28 346-373 54-81 (126)
408 PF02403 Seryl_tRNA_N: Seryl-t 48.2 1.4E+02 0.003 27.2 9.1 33 282-314 11-45 (108)
409 KOG4603 TBP-1 interacting prot 48.2 2.1E+02 0.0045 28.9 10.5 73 282-370 77-149 (201)
410 TIGR03545 conserved hypothetic 48.1 1.5E+02 0.0032 35.5 11.4 36 338-373 227-262 (555)
411 PF11932 DUF3450: Protein of u 48.0 1.3E+02 0.0029 31.8 10.2 52 379-433 71-122 (251)
412 cd00890 Prefoldin Prefoldin is 47.9 1.2E+02 0.0026 28.2 8.8 35 379-413 92-126 (129)
413 PF10212 TTKRSYEDQ: Predicted 47.7 2.7E+02 0.0058 32.9 13.0 62 338-399 449-512 (518)
414 PRK15041 methyl-accepting chem 47.7 5.4E+02 0.012 30.5 20.5 56 382-437 346-411 (554)
415 COG3169 Uncharacterized protei 47.5 2.2E+02 0.0047 26.2 9.6 33 631-663 81-113 (116)
416 cd09235 V_Alix Middle V-domain 47.4 4.4E+02 0.0095 29.3 21.6 85 283-367 130-229 (339)
417 TIGR01010 BexC_CtrB_KpsE polys 47.3 4.4E+02 0.0096 29.3 20.5 19 527-545 339-357 (362)
418 PF15254 CCDC14: Coiled-coil d 47.3 6.5E+02 0.014 31.2 16.5 113 283-404 447-559 (861)
419 KOG2607 CDK5 activator-binding 47.1 3.8E+02 0.0082 30.8 13.5 43 375-417 453-495 (505)
420 KOG3912 Predicted integral mem 46.9 1.8E+02 0.0039 31.8 10.6 137 525-663 175-332 (372)
421 PF01576 Myosin_tail_1: Myosin 46.9 6.4 0.00014 49.2 0.0 129 375-503 322-458 (859)
422 PF10337 DUF2422: Protein of u 46.6 65 0.0014 37.3 8.1 16 741-756 192-207 (459)
423 PF04048 Sec8_exocyst: Sec8 ex 46.4 1.8E+02 0.0038 28.2 9.9 53 338-397 87-139 (142)
424 KOG0999 Microtubule-associated 46.3 5.8E+02 0.013 30.4 22.2 92 378-469 104-216 (772)
425 cd09236 V_AnPalA_UmRIM20_like 46.2 4.7E+02 0.01 29.3 23.3 41 426-466 253-294 (353)
426 PF06570 DUF1129: Protein of u 46.1 2E+02 0.0043 29.5 10.8 8 739-746 180-187 (206)
427 PF09403 FadA: Adhesion protei 46.1 2.8E+02 0.0061 26.6 13.6 36 333-368 58-99 (126)
428 KOG0240 Kinesin (SMY1 subfamil 45.4 6.1E+02 0.013 30.4 16.7 45 341-390 467-511 (607)
429 KOG0972 Huntingtin interacting 45.3 4.5E+02 0.0098 28.8 13.9 143 265-424 229-376 (384)
430 PRK13499 rhamnose-proton sympo 45.2 3.1E+02 0.0067 30.8 12.8 28 639-666 309-342 (345)
431 KOG1581 UDP-galactose transpor 45.0 1.7E+02 0.0038 32.2 10.3 125 531-662 176-310 (327)
432 PF04849 HAP1_N: HAP1 N-termin 45.0 4.7E+02 0.01 28.9 17.9 168 283-463 96-274 (306)
433 TIGR00361 ComEC_Rec2 DNA inter 45.0 3.5E+02 0.0075 33.0 14.3 26 551-576 153-178 (662)
434 PF06005 DUF904: Protein of un 44.8 1.4E+02 0.003 25.8 7.8 68 315-391 3-70 (72)
435 PF09304 Cortex-I_coil: Cortex 44.8 2.2E+02 0.0047 26.6 9.4 78 283-371 15-92 (107)
436 TIGR03017 EpsF chain length de 44.7 2E+02 0.0043 32.9 11.7 30 390-419 337-366 (444)
437 KOG3850 Predicted membrane pro 44.6 2.8E+02 0.006 31.5 11.9 87 309-399 274-364 (455)
438 PF10267 Tmemb_cc2: Predicted 44.5 4.6E+02 0.0099 30.1 14.1 85 293-378 253-339 (395)
439 PF10654 DUF2481: Protein of u 44.4 31 0.00066 32.3 3.9 33 383-415 2-40 (126)
440 PF07058 Myosin_HC-like: Myosi 44.4 3.7E+02 0.008 29.6 12.5 22 305-326 111-132 (351)
441 PF06123 CreD: Inner membrane 44.3 2.7E+02 0.0057 32.3 12.4 81 617-699 286-377 (430)
442 PF04799 Fzo_mitofusin: fzo-li 43.9 1.5E+02 0.0033 29.8 9.1 53 302-358 113-165 (171)
443 cd07651 F-BAR_PombeCdc15_like 43.8 4E+02 0.0087 27.8 15.0 53 338-395 151-203 (236)
444 PF14992 TMCO5: TMCO5 family 43.7 4.7E+02 0.01 28.6 15.5 79 340-424 14-99 (280)
445 PF05130 FlgN: FlgN protein; 43.7 2.6E+02 0.0055 25.9 10.5 116 261-393 10-131 (143)
446 PF06103 DUF948: Bacterial pro 43.5 98 0.0021 27.3 7.1 33 395-427 47-79 (90)
447 TIGR03752 conj_TIGR03752 integ 43.5 2.4E+02 0.0051 33.0 11.6 85 282-370 57-142 (472)
448 PF07106 TBPIP: Tat binding pr 43.5 2E+02 0.0044 28.4 10.1 18 286-303 74-91 (169)
449 PF03801 Ndc80_HEC: HEC/Ndc80p 43.4 75 0.0016 31.5 6.9 97 38-144 35-137 (157)
450 PF03800 Nuf2: Nuf2 family; I 43.3 44 0.00095 32.4 5.2 97 47-146 16-126 (146)
451 TIGR00915 2A0602 The (Largely 43.3 2E+02 0.0044 37.0 12.5 28 629-656 903-933 (1044)
452 TIGR00914 2A0601 heavy metal e 43.3 2.3E+02 0.005 36.5 13.0 13 712-724 986-998 (1051)
453 COG1283 NptA Na+/phosphate sym 43.2 5.9E+02 0.013 30.4 15.0 52 641-693 180-231 (533)
454 PRK10361 DNA recombination pro 43.0 6.2E+02 0.013 29.8 20.2 40 388-427 150-190 (475)
455 PF06705 SF-assemblin: SF-asse 42.9 4.3E+02 0.0093 27.9 19.2 29 456-484 159-188 (247)
456 KOG0999 Microtubule-associated 42.9 6.5E+02 0.014 30.0 22.2 130 336-468 106-240 (772)
457 PF08702 Fib_alpha: Fibrinogen 42.8 3.4E+02 0.0073 26.6 14.2 107 299-408 22-131 (146)
458 PF14992 TMCO5: TMCO5 family 42.8 4.8E+02 0.01 28.5 18.2 27 381-407 116-142 (280)
459 PF09930 DUF2162: Predicted tr 42.7 4.3E+02 0.0094 27.9 18.6 111 563-689 69-186 (224)
460 PF05529 Bap31: B-cell recepto 42.6 1.5E+02 0.0032 30.0 9.2 30 338-367 162-191 (192)
461 COG4485 Predicted membrane pro 42.4 1.1E+02 0.0023 37.3 8.8 17 535-551 183-199 (858)
462 PRK12705 hypothetical protein; 42.4 6.5E+02 0.014 29.9 17.4 43 439-481 144-194 (508)
463 cd09235 V_Alix Middle V-domain 42.2 5.2E+02 0.011 28.7 24.8 132 331-468 128-282 (339)
464 COG1346 LrgB Putative effector 42.2 2.3E+02 0.0049 30.0 10.3 32 531-562 6-39 (230)
465 COG0216 PrfA Protein chain rel 41.8 2.2E+02 0.0047 31.9 10.5 26 350-375 82-109 (363)
466 COG0670 Integral membrane prot 41.8 4.5E+02 0.0098 27.8 20.5 93 604-697 96-195 (233)
467 PF04508 Pox_A_type_inc: Viral 41.7 26 0.00056 23.7 2.2 18 448-465 2-19 (23)
468 PRK05431 seryl-tRNA synthetase 41.5 99 0.0022 35.6 8.5 71 298-369 28-98 (425)
469 KOG3859 Septins (P-loop GTPase 41.4 5.2E+02 0.011 28.4 13.1 68 298-365 330-398 (406)
470 cd07649 F-BAR_GAS7 The F-BAR ( 41.4 2.1E+02 0.0045 30.2 10.2 32 357-393 167-198 (233)
471 PF12325 TMF_TATA_bd: TATA ele 41.3 3.2E+02 0.0069 26.0 12.3 12 338-349 97-108 (120)
472 KOG0163 Myosin class VI heavy 41.2 4.4E+02 0.0094 32.6 13.4 69 78-146 523-613 (1259)
473 PF11744 ALMT: Aluminium activ 41.1 1.8E+02 0.004 33.3 10.4 18 740-757 152-169 (406)
474 PF14362 DUF4407: Domain of un 40.9 5E+02 0.011 28.1 15.9 21 405-425 232-252 (301)
475 PF07851 TMPIT: TMPIT-like pro 40.7 5.6E+02 0.012 28.6 27.1 24 386-409 37-60 (330)
476 PF07028 DUF1319: Protein of u 40.5 2.5E+02 0.0054 27.0 9.4 65 282-356 58-122 (126)
477 PRK12821 aspartyl/glutamyl-tRN 40.5 6.6E+02 0.014 29.3 15.9 15 593-607 55-69 (477)
478 PF11700 ATG22: Vacuole efflux 40.5 5E+02 0.011 30.3 14.2 144 613-761 70-247 (477)
479 PRK07668 hypothetical protein; 40.4 1.1E+02 0.0024 32.8 8.0 32 457-488 32-64 (254)
480 KOG0982 Centrosomal protein Nu 40.4 6.4E+02 0.014 29.2 22.3 21 471-491 403-423 (502)
481 COG3238 Uncharacterized protei 40.2 1.3E+02 0.0029 29.7 7.9 57 672-729 4-60 (150)
482 PLN02678 seryl-tRNA synthetase 40.1 1.3E+02 0.0028 35.0 9.1 90 280-370 13-104 (448)
483 PF03631 Virul_fac_BrkB: Virul 39.9 4.6E+02 0.0099 27.5 12.8 50 560-613 160-211 (260)
484 PRK04654 sec-independent trans 39.6 1.3E+02 0.0029 31.3 8.0 29 289-317 25-53 (214)
485 PF01519 DUF16: Protein of unk 39.5 76 0.0017 29.3 5.6 51 436-492 52-102 (102)
486 PF07106 TBPIP: Tat binding pr 39.3 3.3E+02 0.0072 26.9 10.9 34 339-372 74-107 (169)
487 PRK15178 Vi polysaccharide exp 39.2 6.7E+02 0.015 29.1 17.3 38 451-488 318-361 (434)
488 PF11214 Med2: Mediator comple 39.2 1.9E+02 0.004 26.9 8.1 58 385-452 27-84 (105)
489 PF10481 CENP-F_N: Cenp-F N-te 39.1 5.4E+02 0.012 28.0 13.5 33 336-368 73-105 (307)
490 PRK09579 multidrug efflux prot 39.1 2.1E+02 0.0045 36.9 11.6 22 95-116 188-210 (1017)
491 PRK11539 ComEC family competen 39.1 4.8E+02 0.01 32.4 14.4 27 548-574 218-244 (755)
492 KOG2751 Beclin-like protein [S 38.9 2.8E+02 0.006 31.9 11.0 16 299-314 151-166 (447)
493 PLN02400 cellulose synthase 38.9 3.7E+02 0.0081 34.6 13.2 9 138-146 319-327 (1085)
494 COG1480 Predicted membrane-ass 38.7 8.3E+02 0.018 30.0 15.4 178 529-726 276-458 (700)
495 PF06103 DUF948: Bacterial pro 38.7 2.2E+02 0.0048 25.1 8.6 71 386-456 17-87 (90)
496 PF04018 DUF368: Domain of unk 38.7 5.3E+02 0.012 27.8 15.3 149 589-753 50-204 (257)
497 KOG2991 Splicing regulator [RN 38.5 5.4E+02 0.012 27.7 15.4 148 244-420 131-296 (330)
498 PF15290 Syntaphilin: Golgi-lo 38.2 2E+02 0.0044 31.2 9.3 87 265-362 63-149 (305)
499 PF15112 DUF4559: Domain of un 38.1 4.1E+02 0.0088 29.3 11.8 148 333-490 139-307 (307)
500 PF15030 DUF4527: Protein of u 38.1 4.5E+02 0.0097 28.1 11.6 82 285-369 17-104 (277)
No 1
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=3.9e-102 Score=889.82 Aligned_cols=412 Identities=37% Similarity=0.544 Sum_probs=354.6
Q ss_pred hhhhhHHHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCC--CCCCCCChhHHHHHHhhHHHHHHHHhcCC
Q 041515 41 MEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTM--TFGTSLPHSMAEKFKICTDISSAIKNLGY 118 (762)
Q Consensus 41 MeE~D~ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~--~l~~~lP~~msaRfr~~~~lA~a~k~~Gy 118 (762)
|||||+||||+|+|+||+||+||+||++||||++|++||+|||+|||+. ++|++||++||||||+||+||+|||++||
T Consensus 1 Mee~d~ii~~~L~~~g~~~~~~~~sl~~ft~e~~v~~~~~cL~~I~p~~~~~l~~~lP~~msaRfr~~~~lA~~~k~lGy 80 (594)
T PF05667_consen 1 MEEADEIIIHSLRQIGCDIPEDVQSLKQFTTELLVEAVVRCLRVIDPSLGSSLPRSLPPGMSARFRVGTSLAQACKELGY 80 (594)
T ss_pred CcHHHHHHHHHHHHcCCcccCCcccHhhCCHHHHHHHHHHHHHHhCccccCCCcccCChHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999 69999999999999999999999999999
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHHhcCCCccccccC------CCccccccccccccccCCCCccchhhHHHHHHh--
Q 041515 119 IGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVAD------GKGVDVRGNINKSTLEGNGETDLDHQKIRDQLE-- 190 (762)
Q Consensus 119 ~~digy~tfLY~~~~dlr~l~~fLiekLp~~p~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~-- 190 (762)
|||||||||||||++|+|++|||||||||++..+....+ |.+..+.++| ++.++++|+
T Consensus 81 ~~digyq~fLYp~e~~~R~ll~fLiekLP~~~~~~~~~~~~~~~~~~~~~l~~~i--------------~~~i~~~l~~p 146 (594)
T PF05667_consen 81 RGDIGYQTFLYPNEKDLRRLLMFLIEKLPRENTSSADSDASKQPVGKSALLQRSI--------------AQAIREQLKAP 146 (594)
T ss_pred CCCCcchhhccCChHHHHHHHHHHHHHCCccccccccchhhhhhHHHHHHHHHHH--------------HHHHHhhccCC
Confidence 999999999999999999999999999966632222221 5566677777 688999987
Q ss_pred ----hhhhcc--------CCCCCC---CCccccccc--CCchhhhcccC---CCcc-------ccccchhhhchhhh---
Q 041515 191 ----ECRLEN--------ELPQSS---NSEDVASDS--VSSSRVQDYNK---NDVT-------GVIRGKIKNHADNL--- 240 (762)
Q Consensus 191 ----~c~~~~--------~~~~~~---~~~~~~~~~--~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~l--- 240 (762)
+||... .++|+. +.|...+.. ..+.++++|+. |||| +++||.+++|+..+
T Consensus 147 wvP~~cr~~~~~~~~~~~~~~f~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~v~~Q~~~~~~~~~SlLe~naa~l~~~ 226 (594)
T PF05667_consen 147 WVPPFCRPTMRRKQGSSSLKRFHSQPLSIPFSTSGREKPSPKELQEYYSRYLPPVTAQPPQAASRAPSLLECNAAELSAA 226 (594)
T ss_pred CCChhhcccccccCCCcccccccCCCceeecccCCCcCCCChhHHHHHHhhCCCccccccccchhhhhHHhhcHHHHhhc
Confidence 799332 234543 233222211 12345555544 4443 23344443333221
Q ss_pred --------------------------------------------------------------------------------
Q 041515 241 -------------------------------------------------------------------------------- 240 (762)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (762)
T Consensus 227 ~~~~~e~~~~g~~e~~~~K~~~l~~~l~e~lr~~~~~~~~~~~~~~s~~dl~~~l~~~~~~~~~k~s~f~~~ek~~~~~~ 306 (594)
T PF05667_consen 227 QEWENEWNSQGLEEYRKRKQQRLQKRLAEQLRQAASASSDNHFRASSSDDLADVLHKFSGEAWDKGSRFTHSEKPQEAAP 306 (594)
T ss_pred cchhhccccccchhhhHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHhccccccccccccccccchhhhhh
Confidence
Q ss_pred ---------------------------hhHHHHH---------------------HHHHhhhhhcccCcHHHHHHHHHHH
Q 041515 241 ---------------------------QNRDESL---------------------MEAVTAKTSELCDPEEEYQLLKAAA 272 (762)
Q Consensus 241 ---------------------------~~~~~~l---------------------~~~~~~~~~~~~e~e~~~~~~~~~~ 272 (762)
+.+++.+ .+++++.+.+++++|+++.++++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~ 386 (594)
T PF05667_consen 307 AAAVVPPKEKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTV 386 (594)
T ss_pred ccccCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111 0222245567889999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 273 EMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSE 352 (762)
Q Consensus 273 e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e 352 (762)
++|+| +++||+||+++|+++++||.+|++|||+||.||++|||+|+++.+++..|+++++++||++|++++++.+|
T Consensus 387 ~lL~d----~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e 462 (594)
T PF05667_consen 387 ELLPD----AEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEE 462 (594)
T ss_pred HHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 353 IRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFRE 432 (762)
Q Consensus 353 ~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~ 432 (762)
++.|+++|+||+++|+++||++||++||+||+|||||||||++||+||+.|||+||||||+++|+|+|||+|+||+||+|
T Consensus 463 ~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrd 542 (594)
T PF05667_consen 463 IRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRD 542 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccch--------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc
Q 041515 433 AKKDQS--------------FEQVSEKILATDRVRREIAEYEKKLAAVASRS 470 (762)
Q Consensus 433 akkd~~--------------~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~ 470 (762)
||||++ |++||++|++||+++|||||||+||+++++||
T Consensus 543 AKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~~kn 594 (594)
T PF05667_consen 543 AKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTESQKN 594 (594)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Confidence 999994 99999999999999999999999999999986
No 2
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.7e-100 Score=810.51 Aligned_cols=428 Identities=29% Similarity=0.447 Sum_probs=356.5
Q ss_pred hhhhhHHHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCCCCCCC--CChhHHHHHHhhHHHHHHHHhcCC
Q 041515 41 MEESEVILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTS--LPHSMAEKFKICTDISSAIKNLGY 118 (762)
Q Consensus 41 MeE~D~ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~~l~~~--lP~~msaRfr~~~~lA~a~k~~Gy 118 (762)
|||||+||||+|||+||+||+ ++++++||||+||+|||||||+|||+.++|++ ||++|++|||+||+||++||++||
T Consensus 1 MEEadriimh~lrq~g~sipp-~~~lseFTteqvveavvrcL~~Idps~q~~~s~llp~am~~Rfrla~siAq~ckdlgy 79 (521)
T KOG1937|consen 1 MEEADRIIMHALRQLGCSIPP-FEDLSEFTTEQVVEAVVRCLWKIDPSKQTISSYLLPKAMTTRFRLANSIAQYCKDLGY 79 (521)
T ss_pred CcHHHHHHHHHHHHcCCCCCC-chhHhhcCHHHHHHHHHHHHHhcCccccccccccCchHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999987 99999999999999999999999999998887 888999999999999999999999
Q ss_pred CCCCcccccccCChHHHHHHHHHHHHHhcCCCccccccCCCccccccccccccccCCCCccchhhHHHHHHh------hh
Q 041515 119 IGDISYYKFLYPSEEDLYKLIRFLVERLSELPKKVKVADGKGVDVRGNINKSTLEGNGETDLDHQKIRDQLE------EC 192 (762)
Q Consensus 119 ~~digy~tfLY~~~~dlr~l~~fLiekLp~~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~------~c 192 (762)
|||+|||||||||++|+|++||||+|+||.++.+. +....+.|.| .+.++.|++ +|
T Consensus 80 rgD~gyqtfLypn~~dlR~ll~fLie~lp~dsQ~a----~~~~~l~rfl--------------~s~l~~ql~~pwvp~~~ 141 (521)
T KOG1937|consen 80 RGDTGYQTFLYPNINDLRSLLIFLIEKLPADSQEA----VSLDQLHRFL--------------ESVLKHQLSQPWVPVYC 141 (521)
T ss_pred CcccchhheecCCcccHHHHHHHHHhhCCcccccc----chHHHHHHHH--------------HHHHHHHhcCCCCchhh
Confidence 99999999999999999999999999996444433 4445555555 466777776 68
Q ss_pred hhccC---CCCCC-------------CCccc-------cc---ccCCchhh-hcccC--------------CCcc---cc
Q 041515 193 RLENE---LPQSS-------------NSEDV-------AS---DSVSSSRV-QDYNK--------------NDVT---GV 228 (762)
Q Consensus 193 ~~~~~---~~~~~-------------~~~~~-------~~---~~~~~~~~-~~~~~--------------~~~~---~~ 228 (762)
|.+.. ..|+. +.|.. -+ ..+.+++| ++|.+ .|++ +.
T Consensus 142 r~~~~~kl~gFr~~ed~r~q~q~ld~q~pehfqq~~~~l~dpi~~sd~~~~ld~wg~~~~t~~df~f~~t~dPa~p~~p~ 221 (521)
T KOG1937|consen 142 RIASRPKLEGFRDIEDNRNQEQKLDNQTPEHFQQCNAVLNDPIPNSDPRKWLDQWGNSSHTEKDFNFKLTDDPALPPKPI 221 (521)
T ss_pred cccccccccccCcchhhHHHHHhhhhccHHHHHHHHHHhcCcccccchhhHHHHHhccCCccccccceecCCCCCCCccc
Confidence 85531 11111 11110 00 01122233 22211 2222 22
Q ss_pred ccchhhhch---hhhhhH-------------HHHHHHHHhhhhhcccCcHHHHHHH----HHHHHHhcCCCCChhHHHHH
Q 041515 229 IRGKIKNHA---DNLQNR-------------DESLMEAVTAKTSELCDPEEEYQLL----KAAAEMAFDDSHPTEFYLEQ 288 (762)
Q Consensus 229 ~~~~~~~~~---~~l~~~-------------~~~l~~~~~~~~~~~~e~e~~~~~~----~~~~e~l~d~~~~~~~n~~k 288 (762)
++.+...+. +++.+. .....++++.++++.++.+.+++.. .++++.++| ++.|++|
T Consensus 222 ~~~passe~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~d----geayLaK 297 (521)
T KOG1937|consen 222 FAKPASSEEEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDD----GEAYLAK 297 (521)
T ss_pred cCCCccccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCC----hHhHHHH
Confidence 222221111 222211 2222477777777666666655544 455666666 9999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 289 LDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 289 L~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
|+.++..+.+++.+|++|||+||.||.++++.|++++.+.+.|..+ +.+|++++++++.+.+|++++++++++|..+++
T Consensus 298 L~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 298 LMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccch----------
Q 041515 369 KQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQS---------- 438 (762)
Q Consensus 369 ~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~---------- 438 (762)
++|++++|..||+||+||+||||||++||.||++|||+||||+|+++++|+|+|+|+||++|++||||++
T Consensus 377 ~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~ 456 (521)
T KOG1937|consen 377 KLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTR 456 (521)
T ss_pred cCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ----HHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc--cchhhhhhhHHHHHHHhhhhhh
Q 041515 439 ----FEQVSEKILATDRVRREIAEYEKKLAAVASRS--LNVDKLQADVDVIMKENEFLEQ 492 (762)
Q Consensus 439 ----~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~--~nle~i~~D~~~i~~en~~~~s 492 (762)
|+||+++|++||+++||+||||.||+.|.+|+ +|||+|++||++|++||+.|.+
T Consensus 457 iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L~~ 516 (521)
T KOG1937|consen 457 IHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQLFS 516 (521)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999997654
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=8e-35 Score=311.72 Aligned_cols=245 Identities=33% Similarity=0.527 Sum_probs=223.2
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhH
Q 041515 516 DGAKRQQQKICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSS 595 (762)
Q Consensus 516 ~ga~~~~~~~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~ 595 (762)
++.++++++.++...++.+|+++|++.+++||++++.++|+||++++.+|+.++++...+.+.++..|..+.+.+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~ 85 (316)
T KOG1441|consen 6 EPASGQLKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRT 85 (316)
T ss_pred cCcccccchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHH
Confidence 34445666789999999999999999999999999988999999999999999999999999999888776667789999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHH-HHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHH
Q 041515 596 LFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPT-IVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFG 674 (762)
Q Consensus 596 l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~-~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G 674 (762)
++|+|++++++++++|.|+.|+||||+|++|+ ++|+ ++++++++++|++++.++++++++++||++++++|.+||++|
T Consensus 86 llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa-~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G 164 (316)
T KOG1441|consen 86 LLPLGLVFCISHVLGNVSLSYVPVSFYQTIKA-LMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFG 164 (316)
T ss_pred HHHHHHHHHHHHHhcchhhhccchhHHHHHHh-hcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHH
Confidence 99999999999999999999999999999996 5665 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--hcCCCCHHHHHHHHHHHHHHHHH-HHHHhcCCccc---ccccCChhHHHHHHHHHH
Q 041515 675 AIIAVAWIIPSAINKILWSNLQ--QQGNWTALALMWKTTPVTVFFLL-ALMPWLDPPGV---LFYKWNLNNSSAIFISAL 748 (762)
Q Consensus 675 ~ilalls~l~~Al~~V~~kkll--k~~~lns~~Ll~y~~p~s~i~Ll-~~~~~~e~~~v---~~~~w~~~~~~~i~lsgv 748 (762)
++.++++++..+++++++++++ ++.++|++++++|++|+++++++ |+....|+... ...+|+.+++..++.+ +
T Consensus 165 ~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v 243 (316)
T KOG1441|consen 165 FISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-V 243 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-H
Confidence 9999999999999999999999 46789999999999999999999 77777777665 4456888877777777 9
Q ss_pred HHHHHHHHHHhhcC
Q 041515 749 LGFLLQWSGALALG 762 (762)
Q Consensus 749 lgf~ln~s~fl~Ig 762 (762)
++|++|++.|++||
T Consensus 244 ~~f~~Nls~f~~ig 257 (316)
T KOG1441|consen 244 LAFLLNLSAFLVIG 257 (316)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999998
No 4
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-28 Score=256.97 Aligned_cols=235 Identities=19% Similarity=0.281 Sum_probs=213.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHH
Q 041515 526 CGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSF 605 (762)
Q Consensus 526 ~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l 605 (762)
..++++.++|+++|+.++++||++++.|+||.-+++..+|++++.+.+++++++|.+..++++++. .++++|+++++.+
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~-~kk~~P~~~lf~~ 89 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT-AKKWFPVSLLFVG 89 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH-HHHHccHHHHHHH
Confidence 577788999999999999999999999777777777779999999999999999999988886654 6789999999999
Q ss_pred HHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHH
Q 041515 606 ATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPS 685 (762)
Q Consensus 606 ~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~ 685 (762)
++.++..|++|++||+|+++|+++..++++.+.+|+|.++++.+|+++..+.+|..+++.+|.+|+..||.|++.++++.
T Consensus 90 ~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~ 169 (314)
T KOG1444|consen 90 MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTT 169 (314)
T ss_pred HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHH
Confidence 99999999999999999999986555678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---cCC-hhHHHHHHHHHHHHHHHHHHHHhhc
Q 041515 686 AINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFY---KWN-LNNSSAIFISALLGFLLQWSGALAL 761 (762)
Q Consensus 686 Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~---~w~-~~~~~~i~lsgvlgf~ln~s~fl~I 761 (762)
+.+.++.++..+..+++.+.+++|++.++.++++++..+++.+.-+.+ +|. ..++..+++||++||+++|++|+|.
T Consensus 170 a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct 249 (314)
T KOG1444|consen 170 AAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCT 249 (314)
T ss_pred HHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998889999999999999999999999988877552222 254 4578999999999999999999983
No 5
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.96 E-value=2.5e-28 Score=253.31 Aligned_cols=234 Identities=21% Similarity=0.324 Sum_probs=199.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCC----CCCCCccchhHHHHHH
Q 041515 525 ICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPV----SPPAITTPFSSLFALG 600 (762)
Q Consensus 525 ~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~----~~~~~~~~~~~l~plg 600 (762)
-+..++.+++||.+|+++.|++||.-. +|+||++++.+|+++-+++..+.++....+. .+.+++.+++++.|+|
T Consensus 14 rV~~L~lVl~yY~~Si~Ltf~~~~~~~--~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPta 91 (349)
T KOG1443|consen 14 RVLTLALVLLYYFLSIGLTFYFKWLTK--NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTA 91 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc--CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhh
Confidence 355566779999999999999999865 4999999999999999999888765443332 2345667788999999
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHH
Q 041515 601 VVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFS-KTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAV 679 (762)
Q Consensus 601 l~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lg-ek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilal 679 (762)
++.++++|++|+|+.|+++|+|+|.||+++.|+.+++ +.|| |+++|...+.+++|.+|++++++++.+|+..|+++++
T Consensus 92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs-~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~ 170 (349)
T KOG1443|consen 92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFS-LIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVL 170 (349)
T ss_pred hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHH
Confidence 9999999999999999999999999984344456666 5556 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCC---CCHHHHHHHHHHHHHHHHHHHHHhcCCcccc--cccCCh-------hHHHHHHHHH
Q 041515 680 AWIIPSAINKILWSNLQQQGN---WTALALMWKTTPVTVFFLLALMPWLDPPGVL--FYKWNL-------NNSSAIFISA 747 (762)
Q Consensus 680 ls~l~~Al~~V~~kkllk~~~---lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~--~~~w~~-------~~~~~i~lsg 747 (762)
++++++|++|.+++.++++.+ -||+.++++.+|++.+.++|.++.+||+... +..|+. ..+..+.+.|
T Consensus 171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g 250 (349)
T KOG1443|consen 171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGG 250 (349)
T ss_pred HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHH
Confidence 999999999999999997654 5899999999999999999999999997532 211211 3477889999
Q ss_pred HHHHHHHHHHHhhc
Q 041515 748 LLGFLLQWSGALAL 761 (762)
Q Consensus 748 vlgf~ln~s~fl~I 761 (762)
+++|++.+|+|+++
T Consensus 251 ~laF~l~~sEflLl 264 (349)
T KOG1443|consen 251 LLAFLLEFSEFLLL 264 (349)
T ss_pred HHHHHHHHHHHhee
Confidence 99999999999875
No 6
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=9e-27 Score=256.37 Aligned_cols=235 Identities=17% Similarity=0.231 Sum_probs=200.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CccchhHHHHHHHHH
Q 041515 525 ICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPA-ITTPFSSLFALGVVM 603 (762)
Q Consensus 525 ~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~-~~~~~~~l~plgl~~ 603 (762)
.++.++.+++||.+|+..+++||++++. ||||++++++|++++++++.+++..+..+.++.. ++.+++.++|+|+++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4788889999999999999999999997 8999999999999999888777766544433332 344678999999998
Q ss_pred HHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHH
Q 041515 604 SFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWI 682 (762)
Q Consensus 604 ~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~ 682 (762)
.+.....|+|++++++|+++++|+ +.|++ ++++++++|||++++++++++++++||++++.++.++++.|++++++|+
T Consensus 125 ~~~~~~~~~sl~~~svs~~~iika-~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~ 203 (350)
T PTZ00343 125 LFVHFGAVISMGLGAVSFTHVVKA-AEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSN 203 (350)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH-hhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHH
Confidence 877888899999999999999995 89975 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCCccc---c-c--c---cCCh-hHHHHHHHHH
Q 041515 683 IPSAINKILWSNLQQQG-----NWTALALMWKTTPVTVFFLLALMPWLDPPGV---L-F--Y---KWNL-NNSSAIFISA 747 (762)
Q Consensus 683 l~~Al~~V~~kkllk~~-----~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v---~-~--~---~w~~-~~~~~i~lsg 747 (762)
+++|+|+++.|+++++. ++++.++.+|+.++++++++|+.++.|++.. + . . .|.. ..+..++.+|
T Consensus 204 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~ 283 (350)
T PTZ00343 204 LGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSG 283 (350)
T ss_pred HHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 99999999999988654 4788888888999999999999887776421 1 0 0 1221 2455778899
Q ss_pred HHHHHHHHHHHhhcC
Q 041515 748 LLGFLLQWSGALALG 762 (762)
Q Consensus 748 vlgf~ln~s~fl~Ig 762 (762)
+.+|+.|.++|++||
T Consensus 284 l~~~l~n~~~f~~l~ 298 (350)
T PTZ00343 284 VWYYLYNEVAFYCLG 298 (350)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999986
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.93 E-value=7.7e-25 Score=235.79 Aligned_cols=199 Identities=19% Similarity=0.201 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHH
Q 041515 527 GPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFA 606 (762)
Q Consensus 527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~ 606 (762)
...+.++.||++|++++++||++++. |++|++++++|++++++++.+.+..+..+.++. .+..++.++|+|++++++
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 78 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKI-SSALLKLLLPVAIVHTIG 78 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999986 899999999999999988877755444443333 344788999999999999
Q ss_pred HHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHH
Q 041515 607 TGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPS 685 (762)
Q Consensus 607 i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~ 685 (762)
++++|.|++|+++++++++++ +.|++ ++++++++|||++++.+++++++++|+++.+.++.++++.|+++++++++++
T Consensus 79 ~~~~~~~l~~~s~s~~~li~~-~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~ 157 (302)
T TIGR00817 79 HVTSNVSLSKVAVSFTHTIKA-MEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITF 157 (302)
T ss_pred HHHHHHHHHhccHHHHHHHHh-cchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHH
Confidence 999999999999999999995 78875 8889999999999999999999999999988888888999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 041515 686 AINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPG 729 (762)
Q Consensus 686 Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~ 729 (762)
|+|.++.++..+..+++++.+++|++++++++++|++.+.|++.
T Consensus 158 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 201 (302)
T TIGR00817 158 VSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPP 201 (302)
T ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchH
Confidence 99999999987655789999999999999999999888777643
No 8
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9e-24 Score=216.22 Aligned_cols=236 Identities=17% Similarity=0.248 Sum_probs=198.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCCCCc-cchhHHH
Q 041515 526 CGPVVAMTFNFVVSVGIILTNKLVMGQ--VGFNFPIFLTVIHYAVAWILLAIFKAF-----SIIPVSPPAIT-TPFSSLF 597 (762)
Q Consensus 526 ~~~~~ai~~~~v~Sv~ii~~NK~vl~~--~gF~~Pl~Lt~~q~l~a~ill~i~~~~-----~~~~~~~~~~~-~~~~~l~ 597 (762)
..+..+...|.++|++++|.||++++. ....-|++++++|++++..++..+... +.+..+..+-+ .-.+.++
T Consensus 27 ~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vl 106 (347)
T KOG1442|consen 27 KQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVL 106 (347)
T ss_pred hchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhc
Confidence 344556667778999999999999997 456779999999999998887765432 22222222111 2356899
Q ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecC---ccccHHH
Q 041515 598 ALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTD---LEFNIFG 674 (762)
Q Consensus 598 plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d---~~fs~~G 674 (762)
|+++++.+++.+.|.+|+|++|+||++-|+.++||++++.|+++|.+.+.....+++++++|..+..-.| ..+++.|
T Consensus 107 plsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~G 186 (347)
T KOG1442|consen 107 PLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIG 186 (347)
T ss_pred chhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988777 4689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCc-cccccc--CChhHHHHHHHHHHHHH
Q 041515 675 AIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPP-GVLFYK--WNLNNSSAIFISALLGF 751 (762)
Q Consensus 675 ~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~-~v~~~~--w~~~~~~~i~lsgvlgf 751 (762)
+++++.|+++.|+..+++++.+.+.+---|.+.+|++..++++++|...+.+.. .++.|+ |...+|.++.+||++||
T Consensus 187 vifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF 266 (347)
T KOG1442|consen 187 VIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGF 266 (347)
T ss_pred hHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999988766555678899999999999999988776553 466654 67789999999999999
Q ss_pred HHHHHHHhhc
Q 041515 752 LLQWSGALAL 761 (762)
Q Consensus 752 ~ln~s~fl~I 761 (762)
.+|+.+++-|
T Consensus 267 ~mgyvTg~QI 276 (347)
T KOG1442|consen 267 AMGYVTGWQI 276 (347)
T ss_pred HhhheeeEEE
Confidence 9999998754
No 9
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.87 E-value=5.4e-22 Score=197.84 Aligned_cols=229 Identities=19% Similarity=0.245 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHH
Q 041515 528 PVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFAT 607 (762)
Q Consensus 528 ~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i 607 (762)
.+.+++.|+.+|+.+++.|||+++..||+.-..+.++|-+++.+.+.+++..|....+ .+..+.|+|.+++..+++
T Consensus 7 ~~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR----~t~aK~WfpiSfLLv~MI 82 (309)
T COG5070 7 ELTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR----LTKAKKWFPISFLLVVMI 82 (309)
T ss_pred cchHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee----hhhhhhhcCHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999888877652 345788999999999999
Q ss_pred HHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc--------ccHHHHHHHH
Q 041515 608 GLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE--------FNIFGAIIAV 679 (762)
Q Consensus 608 ~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~--------fs~~G~ilal 679 (762)
..+..||+|+++|.|+++|+.++.+++.++.+|||.+.+-....+.++|++..++++++|.+ +| -||+|..
T Consensus 83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~ 161 (309)
T COG5070 83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMF 161 (309)
T ss_pred HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEe
Confidence 99999999999999999999877788999999999999999999999999999999999973 34 6999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccc--cccCChhHHHHHHHHHHHHHHHHHHH
Q 041515 680 AWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVL--FYKWNLNNSSAIFISALLGFLLQWSG 757 (762)
Q Consensus 680 ls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~--~~~w~~~~~~~i~lsgvlgf~ln~s~ 757 (762)
.+++.++++....++..+-.+.-.++.|||++.++.+.++.++.++|.|.-- ..++....+.++++||+.+++++|++
T Consensus 162 ~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~s 241 (309)
T COG5070 162 TNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCS 241 (309)
T ss_pred hhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999988887765677889999999999999999999999987532 33344445789999999999999999
Q ss_pred Hhhc
Q 041515 758 ALAL 761 (762)
Q Consensus 758 fl~I 761 (762)
-+|+
T Consensus 242 aWcv 245 (309)
T COG5070 242 AWCV 245 (309)
T ss_pred ceeE
Confidence 8875
No 10
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.83 E-value=6.6e-19 Score=190.28 Aligned_cols=225 Identities=19% Similarity=0.237 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 041515 533 TFNFVVSVGIILTNKLVMGQ-VGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLAN 611 (762)
Q Consensus 533 ~~~~v~Sv~ii~~NK~vl~~-~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N 611 (762)
.+|..+.... +++..++.. ++.+||++++++|++++++...+....... +.+++.+++++++.++++.++.+++|
T Consensus 7 ~i~~~~~~~g-~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF08449_consen 7 GIFGGCCSYG-ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF---PKSRKIPLKKYAILSFLFFLASVLSN 82 (303)
T ss_pred HHHHHHHHHH-HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc---cCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 444555554 444589999999999999988876543331 12356689999999999999999999
Q ss_pred hhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc----c------cHHHHHHHHHH
Q 041515 612 TSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE----F------NIFGAIIAVAW 681 (762)
Q Consensus 612 ~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~----f------s~~G~ilalls 681 (762)
.||+|+|+|+++++|++..+++++++++++|+|++++++++++++++|+++++.+|.. . ...|+++.+++
T Consensus 83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~s 162 (303)
T PF08449_consen 83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLS 162 (303)
T ss_pred HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHH
Confidence 9999999999999998544456888999999999999999999999999999987742 1 13399999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhc--CC-cccccc-cCChhHHHHHHHHHHHHHHHHHHH
Q 041515 682 IIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWL--DP-PGVLFY-KWNLNNSSAIFISALLGFLLQWSG 757 (762)
Q Consensus 682 ~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~--e~-~~v~~~-~w~~~~~~~i~lsgvlgf~ln~s~ 757 (762)
.+++|++.++++++.++++.+++++++|++.++++++++.++.+ +. .....+ .+++..+..+++.++.+++.+...
T Consensus 163 l~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i 242 (303)
T PF08449_consen 163 LLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFI 242 (303)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877773 22 122222 134445667777777777666666
Q ss_pred Hhhc
Q 041515 758 ALAL 761 (762)
Q Consensus 758 fl~I 761 (762)
|.++
T Consensus 243 ~~~~ 246 (303)
T PF08449_consen 243 FYLI 246 (303)
T ss_pred HHHH
Confidence 6553
No 11
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2e-14 Score=147.68 Aligned_cols=210 Identities=16% Similarity=0.202 Sum_probs=166.8
Q ss_pred HHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHH
Q 041515 543 ILTNKLVMGQVGFN-FPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGF 621 (762)
Q Consensus 543 i~~NK~vl~~~gF~-~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~ 621 (762)
-.+..++++..||+ |-|.+|++|+++-..+.++-.. .+. +-++..||+.+..++.+..++++++|-|+.|++.|.
T Consensus 59 Gy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~--~~~--~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPt 134 (367)
T KOG1582|consen 59 GYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQ--LIQ--TKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPT 134 (367)
T ss_pred HHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEE--eec--ccceecchhHhhhhHhhhhhccccCcCccccccCcH
Confidence 35678999999996 9999999999987665554421 121 112456888899999999999999999999999999
Q ss_pred HHHHHhhh-HHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc----cccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 622 YQMSKIAV-TPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL----EFNIFGAIIAVAWIIPSAINKILWSNLQ 696 (762)
Q Consensus 622 ~qmlKsas-~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~----~fs~~G~ilalls~l~~Al~~V~~kkll 696 (762)
..++|++. +|+. +...++-|+|+++..+++..++++|.++++..|. +||..|+++.-++.++.|+-+..+++.+
T Consensus 135 QviFKccKliPVm-iggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m 213 (367)
T KOG1582|consen 135 QVIFKCCKLIPVM-IGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAM 213 (367)
T ss_pred HHHHHhhhhhhhh-heeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999763 4444 4566888999999999999999999999999885 5899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-cccc----cccC-ChhHHHHHHHHHHHHHHHHHHH
Q 041515 697 QQGNWTALALMWKTTPVTVFFLLALMPWLDP-PGVL----FYKW-NLNNSSAIFISALLGFLLQWSG 757 (762)
Q Consensus 697 k~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~-~~v~----~~~w-~~~~~~~i~lsgvlgf~ln~s~ 757 (762)
+.++-++.++++|.+.++++++++.+..+++ ...+ ..+| +....++..++|.+|....++-
T Consensus 214 ~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLal 280 (367)
T KOG1582|consen 214 KMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLAL 280 (367)
T ss_pred hhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHH
Confidence 9888899999999999999999887776654 2222 2345 2233455556666665555443
No 12
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.55 E-value=8.2e-13 Score=138.56 Aligned_cols=188 Identities=12% Similarity=0.127 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-----------cCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHH
Q 041515 531 AMTFNFVVSVGIILTNKLVMGQ-----------VGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFAL 599 (762)
Q Consensus 531 ai~~~~v~Sv~ii~~NK~vl~~-----------~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~pl 599 (762)
+-++|++.++-.+++.--++++ -.|..|.++.++|-+++.++.+++......+ ++...||.++..+
T Consensus 13 ~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~---~~~~apl~~y~~i 89 (327)
T KOG1581|consen 13 ILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE---LSGVAPLYKYSLI 89 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc---CCCCCchhHHhHH
Confidence 3345555665555554444443 3688899999999999999987664332222 2234578888889
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc---------cc
Q 041515 600 GVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL---------EF 670 (762)
Q Consensus 600 gl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~---------~f 670 (762)
++...++..++..||+|+|.|.++++||+-+.-+++...+++|+|+++..+++.+++.+||.+++.++. ..
T Consensus 90 s~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~n 169 (327)
T KOG1581|consen 90 SFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGREN 169 (327)
T ss_pred HHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCC
Confidence 999999999999999999999999999885444556788999999999999999999999999988643 25
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 041515 671 NIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLAL 721 (762)
Q Consensus 671 s~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~ 721 (762)
+++|+.++.++.+++|+.+..++++.++++++++++|+|+|+++++..+..
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~ 220 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY 220 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999988765
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.54 E-value=1.6e-12 Score=141.71 Aligned_cols=192 Identities=18% Similarity=0.252 Sum_probs=151.6
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 041515 545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK--AFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFY 622 (762)
Q Consensus 545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~--~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~ 622 (762)
.+.++-+. |+..|.+=+++-++.-+++-.... +.+.-+.... .+.+|.+++.+|++-.....+.+.|++|++++..
T Consensus 31 ~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~-~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~ 108 (334)
T PF06027_consen 31 FSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKV-LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSV 108 (334)
T ss_pred HHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhh-cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHH
Confidence 44555454 788899888777766554432221 1111111111 2335667888899988999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc---------ccHHHHHHHHHHHHHHHHHHHHHH
Q 041515 623 QMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE---------FNIFGAIIAVAWIIPSAINKILWS 693 (762)
Q Consensus 623 qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~---------fs~~G~ilalls~l~~Al~~V~~k 693 (762)
|++.+.++|++++++++++++|+++.+++|+++.++|++++.+.|.. -...|.++++++++++|+++++.+
T Consensus 109 ~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E 188 (334)
T PF06027_consen 109 QLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEE 188 (334)
T ss_pred HhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 99998899999999999999999999999999999999998887642 248999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHH
Q 041515 694 NLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNS 740 (762)
Q Consensus 694 kllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~ 740 (762)
++.++ .+..+.+.....+++++..+...++|..++..+.|+...+
T Consensus 189 ~~v~~--~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~ 233 (334)
T PF06027_consen 189 KLVKK--APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVI 233 (334)
T ss_pred Hhccc--CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhH
Confidence 98864 5678888888889988888888888887777777876543
No 14
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.48 E-value=2e-13 Score=137.89 Aligned_cols=175 Identities=14% Similarity=0.170 Sum_probs=144.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH
Q 041515 554 GFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI 633 (762)
Q Consensus 554 gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~ 633 (762)
.|.|.+.+.++|+.+..++.-++..++ +.... .+.+-+.+..+++-+.+.++.+|.+++|+|.|+..+-||+ -|+-
T Consensus 49 ~FTfalaLVf~qC~~N~vfAkvl~~ir--~~~~~-D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKSc-KPIP 124 (337)
T KOG1580|consen 49 KFTFALALVFFQCTANTVFAKVLFLIR--KKTEI-DNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSC-KPIP 124 (337)
T ss_pred eehHHHHHHHHHHHHHHHHHHhheeec--ccccc-cCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccC-CCcc
Confidence 489999999999999999987664332 22122 1234556788999999999999999999999999999974 7764
Q ss_pred -HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc-------ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHH
Q 041515 634 -VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE-------FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALA 705 (762)
Q Consensus 634 -vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~-------fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~ 705 (762)
+++..++.+++++|+++++++++++||+++.+.+-. -.-+|-++.++|..+.|+.+..++++...+.-++.+
T Consensus 125 VMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~ 204 (337)
T KOG1580|consen 125 VMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTS 204 (337)
T ss_pred eeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchh
Confidence 677788889999999999999999999999987532 235899999999999999999999988888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-ccccc
Q 041515 706 LMWKTTPVTVFFLLALMPWLDP-PGVLF 732 (762)
Q Consensus 706 Ll~y~~p~s~i~Ll~~~~~~e~-~~v~~ 732 (762)
||+|++++|.+.|-...++++. |.++.
T Consensus 205 MM~~~NlwStL~Lg~g~lfTGElweF~y 232 (337)
T KOG1580|consen 205 MMFYTNLWSTLYLGAGLLFTGELWEFFY 232 (337)
T ss_pred hHHHHHHHHHHHhhhhheehhhHHHHHH
Confidence 9999999999999877766543 55443
No 15
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.44 E-value=2.3e-11 Score=127.55 Aligned_cols=197 Identities=17% Similarity=0.144 Sum_probs=143.5
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHH-HHHHHHHHHhhhhcchhHHH
Q 041515 544 LTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVV-MSFATGLANTSLKHNSVGFY 622 (762)
Q Consensus 544 ~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~-~~l~i~l~N~SL~yvsVs~~ 622 (762)
+..|+.++. ..| |..+++.+++++.+++.++...+ + +++ .+..++.+|.+ ++++..+.+.|++|++++..
T Consensus 6 ~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~--~----~~~-~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~ 76 (260)
T TIGR00950 6 VVIGQYLEG-QVP-LYFAVFRRLIFALLLLLPLLRRR--P----PLK-RLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA 76 (260)
T ss_pred HHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHHHHHhc--c----CHh-HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 456888875 345 88899999998888877654433 1 122 34445556554 67888899999999999999
Q ss_pred HHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecC-ccccHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 041515 623 QMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTD-LEFNIFGAIIAVAWIIPSAINKILWSNLQQQGN 700 (762)
Q Consensus 623 qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d-~~fs~~G~ilalls~l~~Al~~V~~kkllk~~~ 700 (762)
+++. .+.|++ ++++.+++|||+++++++++++.++|+++....+ .+.+..|+++++++.++++++.++.++..++.+
T Consensus 77 ~ii~-~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~ 155 (260)
T TIGR00950 77 ALLL-YLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG 155 (260)
T ss_pred HHHH-hhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 9998 489986 7888999999999999999999999998876543 456688999999999999999999998876555
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHHHHHHHHHHHHHHHH
Q 041515 701 WTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQ 754 (762)
Q Consensus 701 lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~~~i~lsgvlgf~ln 754 (762)
.++..+..+...++.+++++.....+... .++...|..+++.|+++.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 156 PELLQFTGWVLLLGALLLLPFAWFLGPNP----QALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHHHHHHHH
Confidence 55555555667778777777766554332 123334444454554443333
No 16
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.41 E-value=4.2e-11 Score=132.55 Aligned_cols=196 Identities=17% Similarity=0.145 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc-CC-CCCCCCCCccchhHHHHHHHHHH
Q 041515 527 GPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF-SI-IPVSPPAITTPFSSLFALGVVMS 604 (762)
Q Consensus 527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~~-~~~~~~~~~~~~~~l~plgl~~~ 604 (762)
.+..+++.-=++..++..+.|+.+.. |.+ |..++++|++++++++.++... +. .+.++. .+..+..++.+|++.+
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~-~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPL-SVSILSKIGLLGFLGS 89 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcc-hHHHHHHHHHHHHHHH
Confidence 34444445556777888888999974 787 8889999999998877655322 11 111111 1224456666776655
Q ss_pred HHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHH------hcccccHHHHHHHHHHHHhhheeeec-Cc--------
Q 041515 605 FATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFIL------FSKTISYKKVLALAIVSVGVAVATVT-DL-------- 668 (762)
Q Consensus 605 l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~------lgek~s~~~~lsLlli~~GV~la~~~-d~-------- 668 (762)
+...+.+.+++|+|.+...++- ++.|++ ++++++| ++||+++.+++++++.++|+++.... +.
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~-~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~ 168 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAIS-NITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP 168 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHH-HhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence 5666889999999999999997 589986 7778888 69999999999999999999886531 11
Q ss_pred ---------------ccc-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCC
Q 041515 669 ---------------EFN-IFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDP 727 (762)
Q Consensus 669 ---------------~fs-~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~ 727 (762)
..+ +.|.+++++++++||+|.++.++..+++. +...+.+++..++.+.+++.+.+.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 112 45999999999999999999998876532 22344555555555555555555554
No 17
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.35 E-value=3.9e-10 Score=121.74 Aligned_cols=213 Identities=12% Similarity=0.193 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHH-HHH
Q 041515 528 PVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVM-SFA 606 (762)
Q Consensus 528 ~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~-~l~ 606 (762)
.+.+.++|....+ ..|..+.+ ++ |..++++|++++++.+.+... .+ +.+++.++..|++. .+.
T Consensus 9 ~l~~~~~Wg~~~~----~~k~~~~~--~~-p~~~~~~R~~~a~~~l~~~~~---~~------~~~~~~~~~~g~~~~~~~ 72 (299)
T PRK11453 9 ALLVVVVWGLNFV----VIKVGLHN--MP-PLMLAGLRFMLVAFPAIFFVA---RP------KVPLNLLLGYGLTISFGQ 72 (299)
T ss_pred HHHHHHHHhhhHH----HHHHHHhc--CC-HHHHHHHHHHHHHHHHHHHhc---CC------CCchHHHHHHHHHHHHHH
Confidence 3444555544332 33887764 77 999999999997766544421 11 11234455556643 344
Q ss_pred HHHHHhhhhc-chhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecC---ccccHHHHHHHHHH
Q 041515 607 TGLANTSLKH-NSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTD---LEFNIFGAIIAVAW 681 (762)
Q Consensus 607 i~l~N~SL~y-vsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d---~~fs~~G~ilalls 681 (762)
..+...+++| +|.+...++- ++.|++ ++++++++||+++.++++++++.++|+++....+ ..+++.|.++++++
T Consensus 73 ~~~~~~~~~~~~~a~~a~~l~-~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~a 151 (299)
T PRK11453 73 FAFLFCAINFGMPAGLASLVL-QAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAA 151 (299)
T ss_pred HHHHHHHHHhcCCHHHHHHHH-HhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHH
Confidence 4555678887 6888988886 478865 7889999999999999999999999999887542 23456899999999
Q ss_pred HHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccCChhHHHHHHHHHHHHHHHHHHH
Q 041515 682 IIPSAINKILWSNLQQQGN-WTALALMWKTTPVTVFFLLALMPWLDPPGVLF---YKWNLNNSSAIFISALLGFLLQWSG 757 (762)
Q Consensus 682 ~l~~Al~~V~~kkllk~~~-lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~---~~w~~~~~~~i~lsgvlgf~ln~s~ 757 (762)
++++|++.++.++..++.. .....+.++...++.+++++.+.+.+++.... .+++...|..+++-|+++..+.+.-
T Consensus 152 al~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l 231 (299)
T PRK11453 152 AFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGI 231 (299)
T ss_pred HHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998754332 33344455655555555554444455432111 1245555666666665555554443
No 18
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.34 E-value=5.9e-11 Score=124.81 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc-----
Q 041515 595 SLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE----- 669 (762)
Q Consensus 595 ~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~----- 669 (762)
++..-+++|++...+..+++.|++.+.||+++++.++++++++++++|++.+..+|+|+++.++|++++..++..
T Consensus 19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~ 98 (244)
T PF04142_consen 19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNS 98 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccc
Confidence 455556779999999999999999999999999888889999999999999999999999999999998774421
Q ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccc----c
Q 041515 670 ------------FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLF----Y 733 (762)
Q Consensus 670 ------------fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~----~ 733 (762)
-.+.|+++++++++++|+.+++.++++|+.+.+-+.-....+.+|+++.++..++.|+..+.. .
T Consensus 99 ~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~ 178 (244)
T PF04142_consen 99 SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFH 178 (244)
T ss_pred cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchh
Confidence 136899999999999999999999999987777666666777888888877766665533222 2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHH
Q 041515 734 KWNLNNSSAIFISALLGFLLQWS 756 (762)
Q Consensus 734 ~w~~~~~~~i~lsgvlgf~ln~s 756 (762)
.|+...|..++..++.|.++.+.
T Consensus 179 G~~~~~~~~i~~~a~gGllva~v 201 (244)
T PF04142_consen 179 GYSWWVWIVIFLQAIGGLLVAFV 201 (244)
T ss_pred hcchHHHHHHHHHHHhhHHHHHH
Confidence 47777788888888888776643
No 19
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.30 E-value=1e-09 Score=118.04 Aligned_cols=199 Identities=17% Similarity=0.187 Sum_probs=137.7
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHH-HHHHHHHHhhh-hcchhHH
Q 041515 544 LTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVM-SFATGLANTSL-KHNSVGF 621 (762)
Q Consensus 544 ~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~-~l~i~l~N~SL-~yvsVs~ 621 (762)
..-|+.+.+ .+ |..++++|++++.+++.++...+..+. . ++..+...+.+|++. ++...+.++++ .+++++.
T Consensus 25 ~~~K~~~~~--~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~ 98 (292)
T PRK11272 25 LVIRIGVES--WP-PLMMAGVRFLIAGILLLAFLLLRGHPL--P-TLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGI 98 (292)
T ss_pred HHHHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHHHhCCCC--C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 345887764 66 999999999999888766543322221 1 233466667777764 46667778888 9999999
Q ss_pred HHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeec-CccccHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 041515 622 YQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVT-DLEFNIFGAIIAVAWIIPSAINKILWSNLQQQG 699 (762)
Q Consensus 622 ~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~-d~~fs~~G~ilalls~l~~Al~~V~~kkllk~~ 699 (762)
.+++- ++.|++ +++++ ++|||+++++++++++.++|+++...+ +.+.+..|.++++++.+++|++.++.++..++
T Consensus 99 a~~l~-~~~Pl~~~lla~-~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~- 175 (292)
T PRK11272 99 AAVVV-ATVPLFTLCFSR-LFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVWSSRLPLP- 175 (292)
T ss_pred HHHHH-HHHHHHHHHHHH-HhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 99887 589986 66776 479999999999999999999987643 34566789999999999999999998876432
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHHHHHHHHHHHHHHHHH
Q 041515 700 NWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQW 755 (762)
Q Consensus 700 ~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~~~i~lsgvlgf~ln~ 755 (762)
++.....|...++.+.++++....+.+... ..+...|..+++.|+++..+.+
T Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 176 --VGMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHH
Confidence 234455566667777766665554432111 1123345555555555544444
No 20
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.26 E-value=1.7e-09 Score=116.64 Aligned_cols=164 Identities=16% Similarity=0.070 Sum_probs=116.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHH
Q 041515 527 GPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFA 606 (762)
Q Consensus 527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~ 606 (762)
..+.++++|... ....|..+.. ++ |..++++|++++.+++.++.. .+ .. ++..++.++..++.+++.
T Consensus 8 ~~l~a~~~Wg~~----~~~~k~~~~~--~~-P~~~~~~R~~~a~l~l~~~~~---~~--~~-~~~~~~~~~~~~l~~~~~ 74 (295)
T PRK11689 8 IGLIAILLWSTM----VGLIRGVSES--LG-PVGGAAMIYSVSGLLLLLTVG---FP--RL-RQFPKRYLLAGGLLFVSY 74 (295)
T ss_pred HHHHHHHHHHHH----HHHHHHHHcc--CC-hHHHHHHHHHHHHHHHHHHcc---cc--cc-ccccHHHHHHHhHHHHHH
Confidence 344556666533 3456988875 77 999999999999888776531 11 11 222333344444445666
Q ss_pred HHHHHhhhhc----chhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc-----------c
Q 041515 607 TGLANTSLKH----NSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE-----------F 670 (762)
Q Consensus 607 i~l~N~SL~y----vsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~-----------f 670 (762)
..+.+.++.| .+.+...++- ++.|++ ++++++++|||+++.+++++++.++|+++....+.. .
T Consensus 75 ~~~~~~a~~~~~~~~~a~~a~~l~-~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 153 (295)
T PRK11689 75 EICLALSLGYANTRRQAIEVGMVN-YLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIAS 153 (295)
T ss_pred HHHHHHHHHHhhccccchHHHHHH-HHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhcccc
Confidence 6666677755 4555666665 578976 788899999999999999999999999988765421 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 041515 671 NIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALAL 706 (762)
Q Consensus 671 s~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~L 706 (762)
+..|.++++++++++|+|.++.++..+ +.++..+
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~ 187 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITL 187 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhH
Confidence 456999999999999999999998754 3455544
No 21
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.17 E-value=3.4e-09 Score=114.33 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc-CCCCC-CC-CCCccchhHHHHHHHHHHHHHHH
Q 041515 533 TFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF-SIIPV-SP-PAITTPFSSLFALGVVMSFATGL 609 (762)
Q Consensus 533 ~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~~~~~-~~-~~~~~~~~~l~plgl~~~l~i~l 609 (762)
+..++.+..-++. |++ . +++ |..++++|++++.+++.+.... +..+. .+ ...+..+..++..++.++++..+
T Consensus 15 ~a~~~wg~~~~~~-k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (296)
T PRK15430 15 AAYFIWGIAPAYF-KLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLL 89 (296)
T ss_pred HHHHHHHHHHHHH-HHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333 875 3 367 9999999999998766544322 11110 00 00111121222333446778899
Q ss_pred HHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHHHHH
Q 041515 610 ANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAIN 688 (762)
Q Consensus 610 ~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~Al~ 688 (762)
.++|++|+|++..+++- ++.|++ ++++++++|||+++++++++++.++|+++....+.+.. .+++++++++|+|
T Consensus 90 ~~~a~~~~~~~~a~~l~-~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~ 164 (296)
T PRK15430 90 FIWAVNNHHMLEASLGY-FINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAFSFAFY 164 (296)
T ss_pred HHHHHhcCchHHHHHHH-HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHH
Confidence 99999999999999997 689986 78889999999999999999999999998754322222 4678889999999
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 041515 689 KILWSNLQQQGNWTALALMWKTTPVTVFFL 718 (762)
Q Consensus 689 ~V~~kkllk~~~lns~~Ll~y~~p~s~i~L 718 (762)
.++.++...+...+......|..+++++.+
T Consensus 165 ~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (296)
T PRK15430 165 GLVRKKIAVEAQTGMLIETMWLLPVAAIYL 194 (296)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 999887643222233444445555555443
No 22
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.14 E-value=7.1e-09 Score=109.22 Aligned_cols=143 Identities=14% Similarity=0.116 Sum_probs=105.0
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcCCC-----CCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcch
Q 041515 545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFSII-----PVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNS 618 (762)
Q Consensus 545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~~~-----~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvs 618 (762)
+.|++ .+ ++ |..++++|++++++++.+.. ..+.. .....+++..+..+...|++++++..+...|++|++
T Consensus 20 ~~k~~-~~--~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~ 95 (256)
T TIGR00688 20 YSKLL-KP--LP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGS 95 (256)
T ss_pred HHHHh-cc--CC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 35773 32 66 99999999999987765432 22211 000111121123355667778888899999999999
Q ss_pred hHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 619 VGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWSNLQ 696 (762)
Q Consensus 619 Vs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~Al~~V~~kkll 696 (762)
++..+++- ++.|++ ++++++++|||+++++++++++.++|+++....+.+.+ .+++++++++|+|.++.++..
T Consensus 96 ~~~a~~l~-~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~~~ 169 (256)
T TIGR00688 96 SLEVSLGY-LINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKALK 169 (256)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhhcC
Confidence 99999997 589986 78899999999999999999999999987654322222 357889999999999988764
No 23
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.14 E-value=8.1e-09 Score=111.48 Aligned_cols=225 Identities=11% Similarity=0.134 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHHHHHHHHHHcC--C---CCCCCCCC-----ccchhHHHHHH
Q 041515 532 MTFNFVVSVGIILTNKLVMGQVGFNF-PIFLTVIHYAVAWILLAIFKAFS--I---IPVSPPAI-----TTPFSSLFALG 600 (762)
Q Consensus 532 i~~~~v~Sv~ii~~NK~vl~~~gF~~-Pl~Lt~~q~l~a~ill~i~~~~~--~---~~~~~~~~-----~~~~~~l~plg 600 (762)
++.-.+-+.++.++-+|.-...+++| |.+..++-=++-.+++....... . .+...+.+ +....++..-+
T Consensus 20 l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa 99 (345)
T KOG2234|consen 20 LIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPA 99 (345)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHH
Confidence 33444556677777777766655554 77777666665555544332111 1 11111111 11123444446
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecC-----------cc
Q 041515 601 VVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTD-----------LE 669 (762)
Q Consensus 601 l~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d-----------~~ 669 (762)
++|++..-+..+++.|++.++||+.-...+..++++..+++++|.++..|.++++.++|+++.-+.. .+
T Consensus 100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~ 179 (345)
T KOG2234|consen 100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQ 179 (345)
T ss_pred HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCccc
Confidence 6788877789999999999999999987677789999999999999999999999999999987311 12
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccc----ccCChhHHHHHHH
Q 041515 670 FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLF----YKWNLNNSSAIFI 745 (762)
Q Consensus 670 fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~----~~w~~~~~~~i~l 745 (762)
..+.|+..++++++++|+-++|.++++|..+.+.|---.-++.+|+++.+......|+..+.. +.|+...|+.++.
T Consensus 180 n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~ 259 (345)
T KOG2234|consen 180 NPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLL 259 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHH
Confidence 358999999999999999999999999988877777666777888888887777777754422 3588888888888
Q ss_pred HHHHHHHHHHH
Q 041515 746 SALLGFLLQWS 756 (762)
Q Consensus 746 sgvlgf~ln~s 756 (762)
.|+-|.++++.
T Consensus 260 ~a~gGLlvs~v 270 (345)
T KOG2234|consen 260 NAVGGLLVSLV 270 (345)
T ss_pred HhccchhHHHH
Confidence 88877777654
No 24
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.13 E-value=1.8e-08 Score=108.69 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=117.7
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 041515 545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQM 624 (762)
Q Consensus 545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qm 624 (762)
+.|+.+.. ++ |..+.++|++++++++.++.+.+..+ .+ +..++.++..|+++++...+..+|++|+|++..++
T Consensus 30 ~~K~~~~~--~~-~~~~~~~R~~~a~l~l~~~~~~~~~~---~~-~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~ 102 (293)
T PRK10532 30 LAKSLFPL--VG-APGVTALRLALGTLILIAIFKPWRLR---FA-KEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA 102 (293)
T ss_pred HHHHHHHH--cC-HHHHHHHHHHHHHHHHHHHHhHHhcc---CC-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 57999885 77 99999999999988877654221111 11 23455677788888888888899999999999998
Q ss_pred HHhhhHHHHH-HHHHHHhcccccHHHHHHHHHHHHhhheeeec--C-ccccHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 041515 625 SKIAVTPTIV-LAEFILFSKTISYKKVLALAIVSVGVAVATVT--D-LEFNIFGAIIAVAWIIPSAINKILWSNLQQQGN 700 (762)
Q Consensus 625 lKsas~P~~v-ll~~l~lgek~s~~~~lsLlli~~GV~la~~~--d-~~fs~~G~ilalls~l~~Al~~V~~kkllk~~~ 700 (762)
+- ++.|+++ +++ +++++. +..+.+.++|+++.... + ...+..|.++++++.+++|+|.++.++..++
T Consensus 103 l~-~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~-- 173 (293)
T PRK10532 103 LE-FTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAGAE-- 173 (293)
T ss_pred HH-HHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 87 5899874 333 355554 44566678898876532 2 2356789999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC
Q 041515 701 WTALALMWKTTPVTVFFLLALMPWLD 726 (762)
Q Consensus 701 lns~~Ll~y~~p~s~i~Ll~~~~~~e 726 (762)
.++..+. +...++.+.++++....+
T Consensus 174 ~~~~~~~-~~~~~~~~~l~~~~~~~~ 198 (293)
T PRK10532 174 HGPATVA-IGSLIAALIFVPIGALQA 198 (293)
T ss_pred CCchHHH-HHHHHHHHHHHHHHHHcc
Confidence 4555543 445666666666655543
No 25
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.04 E-value=1.8e-07 Score=98.52 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccc-hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HH
Q 041515 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTP-FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VL 635 (762)
Q Consensus 558 Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~-~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vl 635 (762)
+....+.+++++.+........+.....+ ...+ +..++..++.+.....+.+.++.|++++..+++.+ +.|++ ++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~p~~~~~ 112 (292)
T COG0697 36 FLFAAALRFLIAALLLLPLLLLEPRGLRP--ALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIG-LLPLFTAL 112 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccc--cccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHH
Confidence 45555558888877744343322211111 1122 23344444456777888899999999999999984 89976 66
Q ss_pred HHH-HHhcccccHHHHHHHHHHHHhhheeeecCccc---cHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 041515 636 AEF-ILFSKTISYKKVLALAIVSVGVAVATVTDLEF---NIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMW 708 (762)
Q Consensus 636 l~~-l~lgek~s~~~~lsLlli~~GV~la~~~d~~f---s~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~ 708 (762)
+++ +++||++++.+++++++.++|++++...+... +..|..+++++.+++|++.++.++.. ..++..+.+
T Consensus 113 ~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~ 186 (292)
T COG0697 113 LAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS---RLGPVTLAL 186 (292)
T ss_pred HHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHH
Confidence 675 66699999999999999999999999877654 36899999999999999999998775 455555555
No 26
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.97 E-value=4.1e-08 Score=102.29 Aligned_cols=188 Identities=19% Similarity=0.229 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHhhc-----cCCchhHHHHHHHHHHHHHHHHHHHHc-------CCCC-CCCCCCcc--chh--HH
Q 041515 534 FNFVVSVGIILTNKLVMGQ-----VGFNFPIFLTVIHYAVAWILLAIFKAF-------SIIP-VSPPAITT--PFS--SL 596 (762)
Q Consensus 534 ~~~v~Sv~ii~~NK~vl~~-----~gF~~Pl~Lt~~q~l~a~ill~i~~~~-------~~~~-~~~~~~~~--~~~--~l 596 (762)
+..++++.-++..||.=+- .||..|.+-+..-|+--+.-++++... |... ........ |++ .+
T Consensus 10 imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lf 89 (372)
T KOG3912|consen 10 IMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLF 89 (372)
T ss_pred hhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCccee
Confidence 3445666677788997553 568889877766665543333332211 1111 00000111 222 35
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc-------
Q 041515 597 FALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE------- 669 (762)
Q Consensus 597 ~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~------- 669 (762)
+|=+++-..+..+.+++|.+.+.|-|||+|.+.+.|+.+++..|++.+.+..+|+++..+++|++++++.|..
T Consensus 90 l~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~ 169 (372)
T KOG3912|consen 90 LPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYT 169 (372)
T ss_pred cChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcc
Confidence 5667776677778899999999999999999878888999999999999999999999999999999887642
Q ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 041515 670 ---FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLAL 721 (762)
Q Consensus 670 ---fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~ 721 (762)
--..|..+.+++-+..|++.++-++.+++++.+|.+.+.|-..++++++..+
T Consensus 170 d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL 224 (372)
T KOG3912|consen 170 DYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLL 224 (372)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHH
Confidence 2378999999999999999999999999999999999999999997766443
No 27
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.92 E-value=7.4e-09 Score=107.66 Aligned_cols=191 Identities=13% Similarity=0.117 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcc-hhHHHHHHHhhhHHH-HHH
Q 041515 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN-SVGFYQMSKIAVTPT-IVL 635 (762)
Q Consensus 558 Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yv-sVs~~qmlKsas~P~-~vl 635 (762)
-.++|+.||++.++-..+.. ..+ ...+.+.|.+.++..-.+|....+.+|.+++|. |+|.+.++|| ..++ .++
T Consensus 33 gNLITFaqFlFia~eGlif~--skf--~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRs-gsll~nM~ 107 (330)
T KOG1583|consen 33 GNLITFAQFLFIATEGLIFT--SKF--FTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRS-GSLLANMI 107 (330)
T ss_pred eeehHHHHHHHHHHhceeee--ccc--cccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEec-CcHHHHHH
Confidence 46899999998777665552 112 122245677777777777778888999999985 9999999997 4555 589
Q ss_pred HHHHHhcccccHHHHHHHHHHHHhhheeeecCc---c--------------cc--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 636 AEFILFSKTISYKKVLALAIVSVGVAVATVTDL---E--------------FN--IFGAIIAVAWIIPSAINKILWSNLQ 696 (762)
Q Consensus 636 l~~l~lgek~s~~~~lsLlli~~GV~la~~~d~---~--------------fs--~~G~ilalls~l~~Al~~V~~kkll 696 (762)
..+++.|+++|..++.|++++++|++++++... . +- .+|+.+..++.+.+|.-+++++...
T Consensus 108 ~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y 187 (330)
T KOG1583|consen 108 LGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTY 187 (330)
T ss_pred HHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887321 0 11 4699999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHH-HhcCCccc-c--------cccC-ChhHHHHHHHHHHHHHHH
Q 041515 697 QQGNWTALALMWKTTPVTVFFLLALM-PWLDPPGV-L--------FYKW-NLNNSSAIFISALLGFLL 753 (762)
Q Consensus 697 k~~~lns~~Ll~y~~p~s~i~Ll~~~-~~~e~~~v-~--------~~~w-~~~~~~~i~lsgvlgf~l 753 (762)
++++-++-+.++|+..++.+++++.. .+...+.. + ..+. -+..|..++.+++.-++.
T Consensus 188 ~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~C 255 (330)
T KOG1583|consen 188 QKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFC 255 (330)
T ss_pred HHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887543 12111111 0 0111 234688888888776653
No 28
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.84 E-value=3e-08 Score=107.10 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc--------ccc
Q 041515 600 GVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL--------EFN 671 (762)
Q Consensus 600 gl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~--------~fs 671 (762)
+.+..+...+.|.||.|.+|+..+++-|++.-|+.+++.+|-++++++.+.+++++.++||++++.+|. +-.
T Consensus 166 c~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ 245 (416)
T KOG2765|consen 166 CPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRP 245 (416)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccch
Confidence 333446677889999999999999998766667777777777899999999999999999999999865 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 041515 672 IFGAIIAVAWIIPSAINKILWSNLQQQG--NWTALALMWKTTPVTVFFLLALMPWLD 726 (762)
Q Consensus 672 ~~G~ilalls~l~~Al~~V~~kkllk~~--~lns~~Ll~y~~p~s~i~Ll~~~~~~e 726 (762)
..|.++++++++.+|+|.++.++...+. ++|--.+.-|..++.++++.|...+.+
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~ 302 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD 302 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8999999999999999999999887554 466555566788888777776555443
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.84 E-value=6.1e-07 Score=96.08 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc-cc
Q 041515 593 FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL-EF 670 (762)
Q Consensus 593 ~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~-~f 670 (762)
+..++..++...+...+.+.++++.+++...++-. +.|++ ++++++++||+++++.+++++++++|+++....+. ..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~ 141 (281)
T TIGR03340 63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLAR-SSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQH 141 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHh-hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 33344455556778888899999999999999974 67876 78899999999999999999999999988765432 35
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515 671 NIFGAIIAVAWIIPSAINKILWSNL 695 (762)
Q Consensus 671 s~~G~ilalls~l~~Al~~V~~kkl 695 (762)
+..|+.+++++++++|+|.++.++.
T Consensus 142 ~~~g~~~~l~aal~~a~~~i~~k~~ 166 (281)
T TIGR03340 142 RRKAYAWALAAALGTAIYSLSDKAA 166 (281)
T ss_pred chhHHHHHHHHHHHHHHhhhhcccc
Confidence 6679999999999999999987665
No 30
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.81 E-value=1.7e-08 Score=97.57 Aligned_cols=89 Identities=27% Similarity=0.396 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-------C--ChhH
Q 041515 674 GAIIAVAWIIPSAINKILWSNLQQQ-----GNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYK-------W--NLNN 739 (762)
Q Consensus 674 G~ilalls~l~~Al~~V~~kkllk~-----~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~-------w--~~~~ 739 (762)
|++++++|+++.|+++++.++++++ .+.+++++++|+++++++++++.+++.|++...... + ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 8999999999999999999999987 689999999999999999999999999987643321 1 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 041515 740 SSAIFISALLGFLLQWSGALALG 762 (762)
Q Consensus 740 ~~~i~lsgvlgf~ln~s~fl~Ig 762 (762)
+..++++|+++|++|+++|++|+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~ 103 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIK 103 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999985
No 31
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.59 E-value=6.6e-06 Score=88.85 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcCCCCCCCCCCccchhHHHHHHHHHHHH
Q 041515 528 PVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFSIIPVSPPAITTPFSSLFALGVVMSFA 606 (762)
Q Consensus 528 ~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~~~~~~~~~~~~~~~~l~plgl~~~l~ 606 (762)
.+.++++|....+.. |.+. +++.|.++ ++.++++++.+.. ..+ .|. ......+..-+..|++++..
T Consensus 6 ~lia~~~wGs~g~~~----k~~~---g~~~~~~~---~~~~g~l~~~~~~~~~~-~~~--~~~~~~~~~g~l~G~~w~ig 72 (290)
T TIGR00776 6 ALIPALFWGSFVLIN----VKIG---GGPYSQTL---GTTFGALILSIAIAIFV-LPE--FWALSIFLVGLLSGAFWALG 72 (290)
T ss_pred HHHHHHHHhhhHHHH----hccC---CCHHHHHH---HHHHHHHHHHHHHHHHh-CCc--ccccHHHHHHHHHHHHHHhh
Confidence 344566665554333 5544 46655554 3555555444332 222 111 11111111222334446666
Q ss_pred HHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHH----HHHHHHHHHhhheeeecCcc-------cc-HH
Q 041515 607 TGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKK----VLALAIVSVGVAVATVTDLE-------FN-IF 673 (762)
Q Consensus 607 i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~----~lsLlli~~GV~la~~~d~~-------fs-~~ 673 (762)
..+...|.+|++++....+-+...|++ ++.+.+++||+.+.+. +++++++++|+++.+..+.+ .+ ..
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~ 152 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKK 152 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhh
Confidence 678888999999999987764344544 6789999999999999 99999999999998764322 34 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q 041515 674 GAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTT 711 (762)
Q Consensus 674 G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~ 711 (762)
|+++++++.++++.|.+..+.. ..+|....+.+.
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~ 186 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQA 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHH
Confidence 9999999999999999998754 367777644443
No 32
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.53 E-value=5e-07 Score=83.13 Aligned_cols=117 Identities=17% Similarity=0.322 Sum_probs=88.8
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCCCccchhHHHHHHHH-HHHHHHHHHhhhhcchh
Q 041515 542 IILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKA-FSIIPVSPPAITTPFSSLFALGVV-MSFATGLANTSLKHNSV 619 (762)
Q Consensus 542 ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~-~~~~~~~~~~~~~~~~~l~plgl~-~~l~i~l~N~SL~yvsV 619 (762)
..+++|...++ ++ |..+++++++++.+ +.++.. .+..+.... ....+..++.++++ .+++..+.+.++++.++
T Consensus 6 ~~~~~k~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 80 (126)
T PF00892_consen 6 YSVFSKKLLKK--IS-PLSITFWRFLIAGI-LLILLLILGRKPFKNL-SPRQWLWLLFLGLLGTALAYLLYFYALKYISA 80 (126)
T ss_pred HHHHHHHHhcc--CC-HHHHHHHHHHHHHH-HHHHHHhhccccccCC-ChhhhhhhhHhhccceehHHHHHHHHHHhcch
Confidence 34567888875 67 89999999999986 333321 111111122 22234556667776 57899999999999999
Q ss_pred HHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheee
Q 041515 620 GFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVAT 664 (762)
Q Consensus 620 s~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~ 664 (762)
+..+++.. +.|++ ++++++++||++++.++++++++++|++++.
T Consensus 81 ~~~~~~~~-~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 81 SIVSILQY-LSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999995 78876 7889999999999999999999999998753
No 33
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.34 E-value=3.3e-07 Score=95.14 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=125.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCccchhHHHHHHHHHH
Q 041515 526 CGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPV-SPPAITTPFSSLFALGVVMS 604 (762)
Q Consensus 526 ~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~-~~~~~~~~~~~l~plgl~~~ 604 (762)
.+.+...+. |.++.++++..|.+..+ |..+...++++-.+..+.+.-....+. .|...|. .++.-|++-.
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~~-----p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~---~LiLRg~mG~ 108 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLEND-----PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRK---WLILRGFMGF 108 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhccC-----hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEE---EEEeehhhhh
Confidence 444444444 56777888887877643 888888887666655554421111111 1222232 2344566666
Q ss_pred HHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee-----cCc---------c
Q 041515 605 FATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV-----TDL---------E 669 (762)
Q Consensus 605 l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~-----~d~---------~ 669 (762)
.++.+..+|++|+|++=+.++- ++.|++ .++++.++||+++....++..+.+.||++..- ||. +
T Consensus 109 tgvmlmyya~~~mslaDA~vIt-FssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~ 187 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVIT-FSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVE 187 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEE-ecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccc
Confidence 7777889999999999999987 789965 89999999999999999999999999999764 221 2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 041515 670 FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLD 726 (762)
Q Consensus 670 fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e 726 (762)
.+..|.+.++.+++..|---+..+++.+ +.+..-.+.|...++.+.-++.....+
T Consensus 188 ~~~~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig 242 (346)
T KOG4510|consen 188 YDIPGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIG 242 (346)
T ss_pred ccCCchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhcc
Confidence 3567888888877776665566676654 345444455555555555444333333
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.22 E-value=0.00014 Score=75.73 Aligned_cols=170 Identities=16% Similarity=0.068 Sum_probs=117.8
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 041515 545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQM 624 (762)
Q Consensus 545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qm 624 (762)
+-|.+|-. +. |.-+++++..++++++..+.+.... +++ +..+..+++.|+..+++..+.+.|+..+|.+....
T Consensus 30 ~Ak~LFP~--vG-~~g~t~lRl~~aaLIll~l~RPwr~---r~~-~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVA 102 (292)
T COG5006 30 FAKSLFPL--VG-AAGVTALRLAIAALILLALFRPWRR---RLS-KPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVA 102 (292)
T ss_pred HHHHHccc--cC-hhhHHHHHHHHHHHHHHHHhhHHHh---ccC-hhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 34666543 44 8889999999999887766432111 122 23466788999999999999999999999999988
Q ss_pred HHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeec--C-ccccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 041515 625 SKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVT--D-LEFNIFGAIIAVAWIIPSAINKILWSNLQQQGNW 701 (762)
Q Consensus 625 lKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~--d-~~fs~~G~ilalls~l~~Al~~V~~kkllk~~~l 701 (762)
+- ++-|+.+. ++..++..--.|+++. +.|..+..-. + -+.|..|.++++++..||++|-+..++.-+ ..
T Consensus 103 iE-F~GPL~vA---~~~sRr~~d~vwvaLA--vlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~ 174 (292)
T COG5006 103 IE-FTGPLAVA---LLSSRRLRDFVWVALA--VLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR--AE 174 (292)
T ss_pred hh-hccHHHHH---HHhccchhhHHHHHHH--HHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc--cC
Confidence 87 78887631 3334555545555554 4554443332 2 367999999999999999999999888764 34
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 041515 702 TALALMWKTTPVTVFFLLALMPWLDPPG 729 (762)
Q Consensus 702 ns~~Ll~y~~p~s~i~Ll~~~~~~e~~~ 729 (762)
++..-+.+-..++.++.+|++..-.++.
T Consensus 175 ~g~~g~a~gm~vAaviv~Pig~~~ag~~ 202 (292)
T COG5006 175 HGTAGVAVGMLVAALIVLPIGAAQAGPA 202 (292)
T ss_pred CCchHHHHHHHHHHHHHhhhhhhhcchh
Confidence 4445555566677777777776544433
No 35
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.15 E-value=4.9e-07 Score=93.30 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 041515 538 VSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHN 617 (762)
Q Consensus 538 ~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yv 617 (762)
++.+..++|-++-.. +-+-|..=+++-+..-+++-.....++. +. -...|++++.++++-.-+..+--.+++|.
T Consensus 29 ~~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~----~~~~~~hYilla~~DVEaNy~vV~AyQyT 102 (336)
T KOG2766|consen 29 LITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR-KY----IKAKWRHYILLAFVDVEANYFVVKAYQYT 102 (336)
T ss_pred HHHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh-HH----HHHHHHHhhheeEEeecccEEEeeehhhc
Confidence 444556677776554 4566766555554443333222222221 11 12245667777766544444455789999
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCcc--------ccHHHHHHHHHHHHHHHHHH
Q 041515 618 SVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLE--------FNIFGAIIAVAWIIPSAINK 689 (762)
Q Consensus 618 sVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~--------fs~~G~ilalls~l~~Al~~ 689 (762)
+..-.+.+-+..+|.+++++|+|++.|+.+.++.++++.++||+++.+.|.. ....|.+++++++-++|+.+
T Consensus 103 smtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSN 182 (336)
T KOG2766|consen 103 SMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSN 182 (336)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeecc
Confidence 9999999987789999999999999999999999999999999999887742 23679999999999999999
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChh
Q 041515 690 ILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLN 738 (762)
Q Consensus 690 V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~ 738 (762)
+.-+.+.+ +.+-.++|....+++.++-.+= +++|...+....|+..
T Consensus 183 v~EEflvk--n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~ 228 (336)
T KOG2766|consen 183 VSEEFLVK--NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSA 228 (336)
T ss_pred ccHHHHHh--cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHH
Confidence 98777765 5788888888888887776655 5667666655566643
No 36
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.14 E-value=0.00021 Score=76.00 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH-cCCCC-CCCCCCccc--hhHHHHHHHH
Q 041515 527 GPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKA-FSIIP-VSPPAITTP--FSSLFALGVV 602 (762)
Q Consensus 527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~-~~~~~-~~~~~~~~~--~~~l~plgl~ 602 (762)
+.++++..|+..+. +-++-|++-. .+ |.-+...|.+.++.++.+... .+..+ .... .+.| +..+...+++
T Consensus 8 Gil~~l~Ay~lwG~-lp~y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~-~~~p~~~~~~~l~a~l 81 (293)
T COG2962 8 GILLALLAYLLWGL-LPLYFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQL-LKQPKTLLMLALTALL 81 (293)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhCcHHHHHHHHHHHH
Confidence 55666666666554 3456688754 45 778888888888777655432 11111 0000 1111 2233334444
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHH
Q 041515 603 MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAW 681 (762)
Q Consensus 603 ~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls 681 (762)
.+++-+..-+|..+-.+--..+=. +..|.+ +++..+|+|||+++.+++++++..+||..-++.-.++++....+++
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY-~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~-- 158 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGY-FINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALAL-- 158 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH--
Confidence 445555555555553333333333 468987 8889999999999999999999999999999988889988777765
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHH
Q 041515 682 IIPSAINKILWSNLQQQGNWTALALMW 708 (762)
Q Consensus 682 ~l~~Al~~V~~kkllk~~~lns~~Ll~ 708 (762)
++++|... +|. .++++.+-+.
T Consensus 159 --sf~~Ygl~-RK~---~~v~a~~g~~ 179 (293)
T COG2962 159 --SFGLYGLL-RKK---LKVDALTGLT 179 (293)
T ss_pred --HHHHHHHH-HHh---cCCchHHhHH
Confidence 78899887 433 3466555443
No 37
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.11 E-value=9.9e-06 Score=75.10 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHHH-HHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc
Q 041515 591 TPFSSLFALGVVMS-FATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL 668 (762)
Q Consensus 591 ~~~~~l~plgl~~~-l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~ 668 (762)
.++..++..|++.. ++..+..+|++|.+ +...++.+ +.|++ ++++.+++||+++++++++++++++|++++.++|.
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~-~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFS-LSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 34555666677654 88899999999999 67777774 78876 78999999999999999999999999999988775
Q ss_pred c
Q 041515 669 E 669 (762)
Q Consensus 669 ~ 669 (762)
+
T Consensus 110 ~ 110 (113)
T PF13536_consen 110 T 110 (113)
T ss_pred c
Confidence 4
No 38
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.09 E-value=1e-05 Score=80.75 Aligned_cols=111 Identities=18% Similarity=0.137 Sum_probs=94.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc--c
Q 041515 592 PFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL--E 669 (762)
Q Consensus 592 ~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~--~ 669 (762)
.+.+..|++++.++...+-..+|+.++.+-.+.+-.+-..|+.+++++++|.++..-+++++++.+.|+++.++.|- .
T Consensus 52 ~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a 131 (290)
T KOG4314|consen 52 FFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA 131 (290)
T ss_pred eeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence 45567788888888888888999999999998887655567778899999999999999999999999999998774 4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 041515 670 FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWT 702 (762)
Q Consensus 670 fs~~G~ilalls~l~~Al~~V~~kkllk~~~ln 702 (762)
.++.|+..+++|.++.|+|.++-|...-..++.
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G 164 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFIGNANFG 164 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccCcch
Confidence 679999999999999999999998877544443
No 39
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.83 E-value=0.00029 Score=66.35 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcCCCCCC-CCCCccchhHHHHHHHHHHHHHHH
Q 041515 532 MTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFSIIPVS-PPAITTPFSSLFALGVVMSFATGL 609 (762)
Q Consensus 532 i~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~~~~~~-~~~~~~~~~~l~plgl~~~l~i~l 609 (762)
.++-.++.....++-|.-+.. .. |.+-++++.++..+++..+. ..|....+ .. ....|..+..-|+..+++-.+
T Consensus 8 ALLsA~fa~L~~iF~KIGl~~--vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSGla~glswl~ 83 (140)
T COG2510 8 ALLSALFAGLTPIFAKIGLEG--VD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSGLAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHhccc--cC-ccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHHHHHHHHHHH
Confidence 333344445556778988874 55 88899999999888877654 33433322 12 223455566667667778888
Q ss_pred HHhhhhcchhHHHHHHHhhhHHH-HHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 610 ANTSLKHNSVGFYQMSKIAVTPT-IVLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 610 ~N~SL~yvsVs~~qmlKsas~P~-~vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
-..+++.-.+|-..-+-. +.|+ +++++++|+||++|...|++++++++|+++.+.
T Consensus 84 Yf~ALk~G~as~VvPldk-~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 84 YFRALKKGKASRVVPLDK-TSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHhcCCcceEEEccc-ccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 888998888877665554 4565 589999999999999999999999999998764
No 40
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.76 E-value=0.00078 Score=70.68 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=80.8
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHH-HHHHHHHHHhhhhcchhHH
Q 041515 543 ILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVV-MSFATGLANTSLKHNSVGF 621 (762)
Q Consensus 543 i~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~-~~l~i~l~N~SL~yvsVs~ 621 (762)
.++.|......+-+ +..+..++++++.+++.+.......+. .. ....+..++.++++ ..+...+.+.++++.+++.
T Consensus 144 ~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 220 (260)
T TIGR00950 144 TVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLGPNP-QA-LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSA 220 (260)
T ss_pred HHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 34567666542222 445555788888877765543321111 11 12234445556665 4578888899999999999
Q ss_pred HHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhh
Q 041515 622 YQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVA 661 (762)
Q Consensus 622 ~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~ 661 (762)
.+++. .+.|++ ++++++++||++++..+++++++++|+.
T Consensus 221 ~s~~~-~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 221 ASILA-LAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99998 588976 7889999999999999999999999974
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.65 E-value=0.001 Score=74.15 Aligned_cols=122 Identities=11% Similarity=0.176 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc-CCCCCCC--CCCccchhHHHHHHHHHHHHHHHHHhhhhc
Q 041515 540 VGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF-SIIPVSP--PAITTPFSSLFALGVVMSFATGLANTSLKH 616 (762)
Q Consensus 540 v~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~~~~~~~--~~~~~~~~~l~plgl~~~l~i~l~N~SL~y 616 (762)
+..++. |.+... ++.+..+++++++++.+.+.+.... ...+... ......+..++..+++.++..++.|+++++
T Consensus 203 ~~~il~-~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~ 279 (358)
T PLN00411 203 VSFILQ-AHIMSE--YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRH 279 (358)
T ss_pred HHHHHH-HHHHHH--cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333343 444443 5655677888888877665443221 1011100 001111122444455555677789999999
Q ss_pred chhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 617 NSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 617 vsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
.+.+...+.- ...|++ ++++++++||++++..+++.+++++|+.++..
T Consensus 280 ~ga~~as~~~-~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 280 KGPLYLAIFK-PLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred cCchHHHHHH-hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9999999998 589987 88899999999999999999999999988764
No 42
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.60 E-value=0.0017 Score=62.53 Aligned_cols=133 Identities=15% Similarity=0.121 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-----cCCchhHHHHHHHHHHHHHHHHHHHHc-CCCC---C-CCCC------Cccchh
Q 041515 531 AMTFNFVVSVGIILTNKLVMGQ-----VGFNFPIFLTVIHYAVAWILLAIFKAF-SIIP---V-SPPA------ITTPFS 594 (762)
Q Consensus 531 ai~~~~v~Sv~ii~~NK~vl~~-----~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~~~~---~-~~~~------~~~~~~ 594 (762)
+++..+..+ .-.++.|.++.. .+++ |+.+..+-..++++++.+.... .... . .... ....+.
T Consensus 5 ~l~s~~~~a-l~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03151_consen 5 ALASSLFSA-LRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF 82 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence 334444444 444455666665 4566 7777777777777776665321 1111 0 0000 112344
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 595 SLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 595 ~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
.++..|++..+....+...++++|.-+++++.+...+++.+++.+++|+++++..++|+++.++|+++.++
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 55556666667778888999999999999999777788888999999999999999999999999998764
No 43
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.58 E-value=0.00031 Score=72.64 Aligned_cols=139 Identities=14% Similarity=0.156 Sum_probs=82.6
Q ss_pred chhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc---------------------------c
Q 041515 617 NSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL---------------------------E 669 (762)
Q Consensus 617 vsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~---------------------------~ 669 (762)
+++|....+|+....++++..+.+++++++..++++.++++.|+.+...+|. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5778888888743334566677777888888888998888888875333322 2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCccccc----ccCChhHHHHHHH
Q 041515 670 FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLF----YKWNLNNSSAIFI 745 (762)
Q Consensus 670 fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~----~~w~~~~~~~i~l 745 (762)
..+.|....+.+++++++.+++.++..+..+.+.+.-.....+++.+..+......++..... ..|+...|..++.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 347788889999999999999998876654333222233333333332222122222211111 1244455666666
Q ss_pred HHHHHHHHHH
Q 041515 746 SALLGFLLQW 755 (762)
Q Consensus 746 sgvlgf~ln~ 755 (762)
+++.++++.+
T Consensus 162 ~a~~~~~v~~ 171 (222)
T TIGR00803 162 NVGGGLCIGG 171 (222)
T ss_pred HHhcCceeee
Confidence 6555555443
No 44
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.54 E-value=0.0012 Score=61.39 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 602 VMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 602 ~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
.++++..+...+++++|+|....+-+ +.|++ +++++++|||++++.++++++++++|+++.+.
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 36788899999999999999988886 67765 88999999999999999999999999988654
No 45
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.53 E-value=0.0013 Score=70.82 Aligned_cols=109 Identities=20% Similarity=0.125 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-H
Q 041515 557 FPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-V 634 (762)
Q Consensus 557 ~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-v 634 (762)
.|...++++++++.+++.++......+....+....+..++..+++ ..+...+.+.++++.+.+...++- +..|++ +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~-~l~Pi~a~ 254 (292)
T PRK11272 176 VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYA-YVNPVVAV 254 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHH
Confidence 3566778898888877665532211111110111234455566665 457778889999999999999997 689987 7
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHhhheeeec
Q 041515 635 LAEFILFSKTISYKKVLALAIVSVGVAVATVT 666 (762)
Q Consensus 635 ll~~l~lgek~s~~~~lsLlli~~GV~la~~~ 666 (762)
+++++++||++++..+++.+++++|+.+....
T Consensus 255 i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 255 LLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999887543
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.05 E-value=0.18 Score=62.13 Aligned_cols=162 Identities=18% Similarity=0.291 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhh---HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALK---ESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED 358 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r---~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e 358 (762)
.++.+.+.|..++...+++.+....-+.+| ...++++.+++++...+..|...-...++..+.+..++.++++..+.
T Consensus 286 ~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n 365 (1074)
T KOG0250|consen 286 QEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIEN 365 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888888888888888778888 44455555555554444333333233344444455555556666666
Q ss_pred HHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041515 359 EYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVD-----TDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREA 433 (762)
Q Consensus 359 ~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~-----~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~a 433 (762)
.+.+++.++. ++-..|++++||- .++.++-.+.+.|++|+..+++.+++-=...+++
T Consensus 366 ~i~~~k~~~d-------------~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~----- 427 (1074)
T KOG0250|consen 366 SIRKLKKEVD-------------RLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV----- 427 (1074)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 6666655544 4455677777776 4555666667777777777776555433222221
Q ss_pred CccchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 041515 434 KKDQSFEQVSEKILATDRVRREIAEYEKKLAAV 466 (762)
Q Consensus 434 kkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~ 466 (762)
-+.+-+.=++.+.+.++|++|..+|...
T Consensus 428 -----~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 428 -----KEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred -----HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333355667778888888887743
No 47
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.03 E-value=0.015 Score=62.84 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=58.9
Q ss_pred HHHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 596 LFALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 596 l~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
++.++++ ..+...+.|.++++.+.+..+++- +..|++ ++++++++||++++..+++.+++++|++..+.
T Consensus 211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~-~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 211 GLAVAILSTALPYSLEMIALTRLPTRTFGTLM-SMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH-HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 4556665 457777889999999999999997 689987 88899999999999999999999999887643
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.97 E-value=0.05 Score=64.00 Aligned_cols=210 Identities=12% Similarity=0.125 Sum_probs=111.4
Q ss_pred hhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHH
Q 041515 253 AKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEA 332 (762)
Q Consensus 253 ~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~ 332 (762)
..+.++.++++++...+..++-+.. ....+++.++..++....+...+..|++..+..+.+-..+. .+.
T Consensus 185 ~l~~~i~~l~~~i~~~~~~i~~~~~---~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i--------~~~ 253 (562)
T PHA02562 185 TLDMKIDHIQQQIKTYNKNIEEQRK---KNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI--------EDP 253 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccH
Confidence 3344455555555544444443322 13467888888888888888888888888777765553221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHhcCCCc--cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHH
Q 041515 333 QAKLLKLREVELERQSVLSEIRKREDEYSKLSA--DLEKQPKV--ASRRSYIERIKEITKNSRKVDTDIERILKETRELQ 408 (762)
Q Consensus 333 ~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~--~~~~~~k~--~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lq 408 (762)
. +.+++++.++..+..++...+..++.+.. .+..-... .. .....++.+.+..+++|..++...+.+....+
T Consensus 254 ~---~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~ 329 (562)
T PHA02562 254 S---AALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLKELQHSLEKLDTAIDELEEIM 329 (562)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12344444555555555444444444421 11111111 11 33445555666666677777777777666766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhh
Q 041515 409 LESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENE 488 (762)
Q Consensus 409 kein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~ 488 (762)
.+.+.+..++.+.-..+.+. -..+.+.+.+...+..+|..||....... ..|+++..+++++..+.+
T Consensus 330 ~~~~~~~~~i~el~~~i~~~----------~~~i~~~~~~~~~l~~ei~~l~~~~~~~~---~~l~~l~~~l~~~~~~~~ 396 (562)
T PHA02562 330 DEFNEQSKKLLELKNKISTN----------KQSLITLVDKAKKVKAAIEELQAEFVDNA---EELAKLQDELDKIVKTKS 396 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhchH---HHHHHHHHHHHHHHHHHH
Confidence 66666665554443222211 12244555666666666666666633222 346666666666666655
Q ss_pred hh
Q 041515 489 FL 490 (762)
Q Consensus 489 ~~ 490 (762)
.+
T Consensus 397 ~~ 398 (562)
T PHA02562 397 EL 398 (562)
T ss_pred HH
Confidence 33
No 49
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.96 E-value=0.069 Score=67.99 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=11.1
Q ss_pred cccCChHHHHHHHHHHHH
Q 041515 127 FLYPSEEDLYKLIRFLVE 144 (762)
Q Consensus 127 fLY~~~~dlr~l~~fLie 144 (762)
..=-+..+-+.++-||-+
T Consensus 552 ivv~~~~~a~~~i~~l~~ 569 (1164)
T TIGR02169 552 VVVEDDAVAKEAIELLKR 569 (1164)
T ss_pred EEECCHHHHHHHHHHHHh
Confidence 334566677777777654
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.95 E-value=0.12 Score=65.68 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=8.3
Q ss_pred HHHHHHHHhcCCCCC
Q 041515 107 TDISSAIKNLGYIGD 121 (762)
Q Consensus 107 ~~lA~a~k~~Gy~~d 121 (762)
.++...+...|...+
T Consensus 120 ~~~~~~l~~~~~~~~ 134 (1164)
T TIGR02169 120 SEIHDFLAAAGIYPE 134 (1164)
T ss_pred HHHHHHHHHcCCCcC
Confidence 345555666665444
No 51
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.91 E-value=0.017 Score=62.38 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 593 FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 593 ~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
+..++..++..++...+.+.++++.+.+..+++- +..|++ ++++++++||++++..+++++++++|+.+...
T Consensus 215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~-~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATAS-YFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 4345555555667788899999999999999997 689987 88899999999999999999999999877643
No 52
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.90 E-value=0.0075 Score=56.94 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHH-HhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecC
Q 041515 596 LFALGVVMSFATGLANTSLKHNSVGFYQMS-KIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTD 667 (762)
Q Consensus 596 l~plgl~~~l~i~l~N~SL~yvsVs~~qml-Ksas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d 667 (762)
.+...++++++..+...+++++|++..-.+ ....+..++++++++|||++++.+++++.++++|+++.-..+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 444566688899999999999999984444 333445568889999999999999999999999998875543
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.84 E-value=0.025 Score=61.20 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=60.1
Q ss_pred hhHHHHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeec
Q 041515 593 FSSLFALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVT 666 (762)
Q Consensus 593 ~~~l~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~ 666 (762)
+..++.++++ ..+...+.+.++++.+.+...++- +..|++ ++++++++||.+++..+++.+++++|+.+...+
T Consensus 214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~-~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLS-LLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 4455666655 446778888999999998888886 589987 788999999999999999999999999876543
No 54
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.83 E-value=0.28 Score=62.98 Aligned_cols=102 Identities=14% Similarity=0.268 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAE 458 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~ 458 (762)
+.....++-+++++.+.++.++-.+...+...++.+..+..+......+..-..-.-++.. ... .+.+++..
T Consensus 882 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~i~~ 953 (1163)
T COG1196 882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT---LET-----ELEREIER 953 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---hhH-----HHHHHHHH
Confidence 4455566666666666666666666666666666665555555544444332222211111 000 78888888
Q ss_pred HHHHHHHHhccc----cchhhhhhhHHHHHHHhh
Q 041515 459 YEKKLAAVASRS----LNVDKLQADVDVIMKENE 488 (762)
Q Consensus 459 le~qi~~~~~k~----~nle~i~~D~~~i~~en~ 488 (762)
++.+|+....=| ..+|...+.|+.+..+.+
T Consensus 954 le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~ 987 (1163)
T COG1196 954 LEEEIEALGPVNLRAIEEYEEVEERYEELKSQRE 987 (1163)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 988887776655 445666666666666554
No 55
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.82 E-value=0.69 Score=49.90 Aligned_cols=177 Identities=16% Similarity=0.227 Sum_probs=92.3
Q ss_pred HHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 041515 308 DALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQ---SVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIK 384 (762)
Q Consensus 308 e~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~---~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~ 384 (762)
-.-|..+.++..+++++........+.....++++..+.. ..--.+...+..+.+|....+..|=+.+.. +.+.
T Consensus 61 r~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E---~~lv 137 (294)
T COG1340 61 REERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEE---RELV 137 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHH---HHHH
Confidence 3344445555555555433333333322223333322222 111223344555555555555554443322 2333
Q ss_pred HHHhhhhhhHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 385 EITKNSRKVDTDIERILKE---TRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEK 461 (762)
Q Consensus 385 Eiv~nirKQ~~eI~Kil~d---tr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~ 461 (762)
+=++-++|+-+++.|++.. ++.|+.++..+..+..-.=.-+.++.-+- +++-.+++++.++.+.++.+..++..
T Consensus 138 q~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea---qe~he~m~k~~~~~De~Rkeade~he 214 (294)
T COG1340 138 QKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA---QEYHEEMIKLFEEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333377777777766653 44444666555555433333333332221 44567889999999999999988888
Q ss_pred HHHHHhccc----cchhhhhhhHHHHHHHhhhh
Q 041515 462 KLAAVASRS----LNVDKLQADVDVIMKENEFL 490 (762)
Q Consensus 462 qi~~~~~k~----~nle~i~~D~~~i~~en~~~ 490 (762)
++.....+- .-+..+.++++.+.+.-..|
T Consensus 215 ~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 215 EFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887666544 44556666666666655544
No 56
>PRK02224 chromosome segregation protein; Provisional
Probab=96.81 E-value=0.24 Score=61.61 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
.++++++.+++.+..+++..++.+.++..+++.+.+
T Consensus 265 ~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~ 300 (880)
T PRK02224 265 ETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544444433
No 57
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.78 E-value=0.0073 Score=65.34 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=76.2
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH-cCCCCCCC--C-CC--ccchhH----HHHHHH-HHHHHHHHHHh
Q 041515 544 LTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKA-FSIIPVSP--P-AI--TTPFSS----LFALGV-VMSFATGLANT 612 (762)
Q Consensus 544 ~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~-~~~~~~~~--~-~~--~~~~~~----l~plgl-~~~l~i~l~N~ 612 (762)
++.|.+....+++ |+.++.+++.++++++.+... ....+..+ . .. ...... .+..++ ++.+...+.+.
T Consensus 162 v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (302)
T TIGR00817 162 IFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFM 240 (302)
T ss_pred HHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555522354 888999999888877766532 12111000 0 00 000001 111221 22222245557
Q ss_pred hhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 613 SLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 613 SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
++++++...++++- ...|++ ++++++++||++++..+++.+++++|+.+...
T Consensus 241 ~l~~~sa~t~sv~~-~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 241 LLGRVSPLTHSVGN-CMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHccCCchHHHHHh-hhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 89999999999996 578987 57899999999999999999999999987653
No 58
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.77 E-value=0.037 Score=59.17 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=89.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHH--HHHHHHHHhcccccHHHH----HHHHHHHHhhheeee
Q 041515 592 PFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPT--IVLAEFILFSKTISYKKV----LALAIVSVGVAVATV 665 (762)
Q Consensus 592 ~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~--~vll~~l~lgek~s~~~~----lsLlli~~GV~la~~ 665 (762)
.+..-+..|++.+++-.+...|++++.||...=+-. ..-+ .+++..++|||-.+...+ ++++++++|+++.++
T Consensus 44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiSt-g~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPIST-GLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccch-hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 344556678888888888889998887765433321 2222 367888999986665554 589999999999998
Q ss_pred cCcc--------ccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041515 666 TDLE--------FNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMP 723 (762)
Q Consensus 666 ~d~~--------fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~ 723 (762)
.|.+ ....|+...+.+.+.+.+|.++.+. .+.|++...+=++.-.++..+++..
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~----~~~~~~~~~lPqaiGm~i~a~i~~~ 184 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA----FHVSGWSAFLPQAIGMLIGAFIFNL 184 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh----cCCChhHhHHHHHHHHHHHHHHHhh
Confidence 7642 2356999999999999999988543 4689988888555544444444444
No 59
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.75 E-value=0.35 Score=59.70 Aligned_cols=137 Identities=20% Similarity=0.294 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHH--HhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWD--ALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDE 359 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe--~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~ 359 (762)
.-+.|..+++.+...+.++.+....|+ ..-..+.+..+.|+.++.= ..+-+.+.+++...++++.+++.
T Consensus 226 ~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W---------~~V~~~~~ql~~~~~~i~~~qek 296 (1074)
T KOG0250|consen 226 AKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAW---------AWVNEVERQLNNQEEEIKKKQEK 296 (1074)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555556666665555 2334445556666654330 02223333444444555555444
Q ss_pred HHHHHHHHhcCCC--ccChH---HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 360 YSKLSADLEKQPK--VASRR---SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDD 427 (762)
Q Consensus 360 ~~~L~~~~~~~~k--~~~R~---~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~de 427 (762)
...|.+++++.-. ..-|+ .--.-|-++..+..-|++||.-.-+|.+.+.++.|.+..+..+....+++
T Consensus 297 ~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 297 VDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443311 12232 23367778888899999999999999999999999998888887776654
No 60
>PRK03918 chromosome segregation protein; Provisional
Probab=96.74 E-value=0.33 Score=60.37 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKE 312 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~ 312 (762)
...+.+|+..+++..+.+..+..+-+..+.
T Consensus 192 ~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~ 221 (880)
T PRK03918 192 EELIKEKEKELEEVLREINEISSELPELRE 221 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333
No 61
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.68 E-value=0.39 Score=63.30 Aligned_cols=192 Identities=19% Similarity=0.212 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhh---chHHHHHH-HHHHHHHHHHHHHHHHHHHhhHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYA---NELEAQAK-LLKLREVELERQSVLSEIRKRED 358 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~---~~~e~~~k-~~~ik~~~~~~~~~~~e~~~k~e 358 (762)
+.....|+..++...+...+|..+--+....+.+-.....+.... ...|.+++ .+++++..+.+..+.......+.
T Consensus 1328 ~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek 1407 (1930)
T KOG0161|consen 1328 EHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEK 1407 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433333333322211 11122222 23444444444444444444455
Q ss_pred HHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-
Q 041515 359 EYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQ- 437 (762)
Q Consensus 359 ~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~- 437 (762)
...+|..+++ .+..=.+|....+....|+..--+|++.+.|....++...-+...|...-.+.-+++-....+
T Consensus 1408 ~k~~l~~el~------d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1408 AKNRLQQELE------DLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred HHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555554 244456778888999999999999999999999999999999999999999999998877744
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhH
Q 041515 438 SFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADV 480 (762)
Q Consensus 438 ~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~ 480 (762)
...++=+.-++.+.+.++|.||+.+++....+.-.+|+...++
T Consensus 1482 ~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1482 LLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677788899999999999886655444444444333
No 62
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.24 Score=60.35 Aligned_cols=139 Identities=14% Similarity=0.210 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHH---HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKES---LEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED 358 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~p---l~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e 358 (762)
-+.-++.|+..++..++++++-...||+++.. |.-|..+++.+++..+..-.....++..+..++-.+...+..-+.
T Consensus 785 re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 36667889999999999999999999998765 344556666665544444444445666666666666666666666
Q ss_pred HHHHHHHHHhcCCC-------cc-----ChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 359 EYSKLSADLEKQPK-------VA-----SRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 359 ~~~~L~~~~~~~~k-------~~-----~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R 420 (762)
.+.++.++++...+ .+ .-....+-+.++.--++|-+.|++|+-.|.....|+++.+-++.++
T Consensus 865 ~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~w 938 (1174)
T KOG0933|consen 865 DVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEW 938 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccc
Confidence 66665555553322 11 1111333444445556677777777888888888887777776554
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.66 E-value=0.34 Score=56.99 Aligned_cols=18 Identities=0% Similarity=0.111 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 041515 452 VRREIAEYEKKLAAVASR 469 (762)
Q Consensus 452 ~~rei~~le~qi~~~~~k 469 (762)
..++...|+.+|+..+..
T Consensus 356 ~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555555555555554
No 64
>PRK02224 chromosome segregation protein; Provisional
Probab=96.63 E-value=0.66 Score=57.80 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH----------HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 284 FYLEQLDEQVGAKKHNLVELELQWDALKESL----------EEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEI 353 (762)
Q Consensus 284 ~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl----------~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~ 353 (762)
...++|....++...++.++...-+.++..+ .+++..+++.+.....+......++.+++.+++....++
T Consensus 307 ~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l 386 (880)
T PRK02224 307 ADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI 386 (880)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666655555333 222333333332222222222334455556666666666
Q ss_pred HhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 041515 354 RKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQ 415 (762)
Q Consensus 354 ~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~ 415 (762)
...++..+.+...++..+. ....|-.++-++-..+..-++++..+-.-....++.++...
T Consensus 387 ~~l~~el~el~~~l~~~~~--~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 387 EELEEEIEELRERFGDAPV--DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHhcchh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665552 34556666666655555555555555554455555554443
No 65
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.61 E-value=0.021 Score=53.04 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHHh-hhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhhee
Q 041515 598 ALGVVMSFATGLANTSLKHNSVGFYQMSKI-AVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVA 663 (762)
Q Consensus 598 plgl~~~l~i~l~N~SL~yvsVs~~qmlKs-as~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la 663 (762)
.+.+.++++..+-..+++++|++..-.+=+ ..+..++++++++|||++++.+++++.++++|++..
T Consensus 40 ~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 40 LSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 344557778888899999999998444432 233456888999999999999999999999999875
No 66
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.014 Score=53.72 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHH-HHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 599 LGVVMSFATGLANTSLKHNSVGFY-QMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 599 lgl~~~l~i~l~N~SL~yvsVs~~-qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
.-++++++..+-..+++++|++.. .+--..-+..++++++++|||+.++.+++++.++++|++..-.
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 445577888888999999999984 4443323445688999999999999999999999999987644
No 67
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.60 E-value=0.01 Score=56.78 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=55.5
Q ss_pred HHHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHH-HHHHHH--HHhcccccHHHHHHHHHHHHhhheeeec
Q 041515 596 LFALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPT-IVLAEF--ILFSKTISYKKVLALAIVSVGVAVATVT 666 (762)
Q Consensus 596 l~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~-~vll~~--l~lgek~s~~~~lsLlli~~GV~la~~~ 666 (762)
++.+|++ +.++..+.+.+++..+++...-+-+ ..+. +++.++ ++|||++++.++++++++++|+++....
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~s-l~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLS-LSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 3445554 7788999999999999999887765 4554 445555 3899999999999999999999987654
No 68
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.53 E-value=0.022 Score=52.60 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHH-HHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 597 FALGVVMSFATGLANTSLKHNSVGFYQ-MSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 597 ~plgl~~~l~i~l~N~SL~yvsVs~~q-mlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
+..-++++.+..+-..+++.+|++..- +--...+..++++++++|||++++.+++++.++++|++..-.
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 334555778888888999999998844 443223445688899999999999999999999999987643
No 69
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.51 E-value=0.51 Score=61.45 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=14.6
Q ss_pred HhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 041515 387 TKNSRKVDTDIERILKETRELQLESNSIQE 416 (762)
Q Consensus 387 v~nirKQ~~eI~Kil~dtr~lqkein~~~~ 416 (762)
.+.+..-++++..+-...+.++++++..+.
T Consensus 983 ~~~ie~le~e~~~l~~~i~~l~kel~~~~~ 1012 (1311)
T TIGR00606 983 NAQLEECEKHQEKINEDMRLMRQDIDTQKI 1012 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555554443
No 70
>PRK01156 chromosome segregation protein; Provisional
Probab=96.49 E-value=0.87 Score=56.94 Aligned_cols=144 Identities=11% Similarity=0.134 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH-----HHHhhchHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLE-----ESLYANELEA---QAKLLKLREVELERQSVLSEIR 354 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~-----~~~~~~~~e~---~~k~~~ik~~~~~~~~~~~e~~ 354 (762)
...+..|+..+......+.+|...++++. ++.+++..++ +.+..- .+. ...+ +|++++.++..+..++.
T Consensus 521 ~~~~~~l~~~l~~~~~~l~~le~~~~~~~-~l~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~l~e~~~~l~ 597 (895)
T PRK01156 521 YNKIESARADLEDIKIKINELKDKHDKYE-EIKNRYKSLKLEDLDSKRTSW-LNALAVISLI-DIETNRSRSNEIKKQLN 597 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH-HHHHhHHHHh-hHHHHHHHHHHHHHHHH
Confidence 44556666666666667777777777666 4444444432 111100 000 0011 33444445555555555
Q ss_pred hhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515 355 KREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFR 431 (762)
Q Consensus 355 ~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~ 431 (762)
..+...+.+..+++....- ...|...+-+-+.+.+..+.++.+.-.+...++.+++.+...+..--...+++-+.
T Consensus 598 ~l~~~l~~le~~~~~~~~~--~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~ 672 (895)
T PRK01156 598 DLESRLQEIEIGFPDDKSY--IDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEI 672 (895)
T ss_pred HHHhhHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5555555555544433211 12366666666777777777777777777777777776666666654444444333
No 71
>PRK11637 AmiB activator; Provisional
Probab=96.47 E-value=0.15 Score=58.27 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK 317 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~ 317 (762)
.+..+++++..++....++.++..+-+..+.-+...
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.64 Score=55.26 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHH-------HHHHHHHHHHHHHH
Q 041515 340 REVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIE-------RILKETRELQLESN 412 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~-------Kil~dtr~lqkein 412 (762)
++|-.++..-.+++=.-....++|..+++.++.. -+.--.|+-++--.|-+||++|+ ....++.+||-+|.
T Consensus 419 qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k--~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik 496 (1118)
T KOG1029|consen 419 QEMLNQKNREQEWIVYLNAKKKQLQQELETLNFK--LQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK 496 (1118)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344445555566655431 23445667777667777777664 45678888888888
Q ss_pred HHHHHHHHHHH
Q 041515 413 SIQERLHRTYA 423 (762)
Q Consensus 413 ~~~~~l~Rtf~ 423 (762)
-++++|.++-.
T Consensus 497 E~q~kl~~l~~ 507 (1118)
T KOG1029|consen 497 ELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHhhhh
Confidence 88888877643
No 73
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.45 E-value=0.66 Score=60.42 Aligned_cols=116 Identities=15% Similarity=0.089 Sum_probs=56.2
Q ss_pred HHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 350 LSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMI 429 (762)
Q Consensus 350 ~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~deli 429 (762)
..++...+..++.|..++.....+.+-...-..|-.+-+.++.-..++..+..+...++++|+.++.+++.-=..-..+-
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~ 877 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556555554433222222334444444444444555555577777777777777666655333322222
Q ss_pred HhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041515 430 FREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAA 465 (762)
Q Consensus 430 f~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~ 465 (762)
-+-.++..--.+|-+..++...+..+|.+++.+|+.
T Consensus 878 ~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~ 913 (1311)
T TIGR00606 878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP 913 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222333332334444444444444444444444443
No 74
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.45 E-value=0.057 Score=58.41 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheee
Q 041515 596 LFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVAT 664 (762)
Q Consensus 596 l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~ 664 (762)
++..++...+...+.+.++++.+.+..+.+- +..|++ ++++++++||++++..+++.+++++|+++..
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~-~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQ-YIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3334555557788999999999999999997 689987 7889999999999999999999987776653
No 75
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.44 E-value=0.37 Score=61.33 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=3.8
Q ss_pred HHHHHhhhh
Q 041515 74 LVSICGQSL 82 (762)
Q Consensus 74 ~v~~~~~cl 82 (762)
++.|+.=||
T Consensus 39 ll~ai~~~l 47 (1179)
T TIGR02168 39 IVDAIRWVL 47 (1179)
T ss_pred HHHHHHHHH
Confidence 444444443
No 76
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.42 E-value=0.031 Score=62.14 Aligned_cols=135 Identities=12% Similarity=0.041 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccC-----CchhHHHHHHHHHHHHHHHHHHHH-cCCCCC--------CCCCCccc
Q 041515 527 GPVVAMTFNFVVSVGIILTNKLVMGQVG-----FNFPIFLTVIHYAVAWILLAIFKA-FSIIPV--------SPPAITTP 592 (762)
Q Consensus 527 ~~~~ai~~~~v~Sv~ii~~NK~vl~~~g-----F~~Pl~Lt~~q~l~a~ill~i~~~-~~~~~~--------~~~~~~~~ 592 (762)
+.+.+++.- ++...-.++.|.++...+ .+ |..+..+.++++++++.++.. ...... .... ...
T Consensus 195 G~~~~l~s~-~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~-~~~ 271 (350)
T PTZ00343 195 AFWCAMLSN-LGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMT-NYT 271 (350)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc-ccc
Confidence 444333333 333334445566665432 33 444666667777766654432 110000 0000 111
Q ss_pred hhHHHHHHHHHHHHHHHHH----hhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 593 FSSLFALGVVMSFATGLAN----TSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 593 ~~~l~plgl~~~l~i~l~N----~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
+..++...++.++...+.| .++++++...+++.-. .-|++ ++++++++||.+++..++|.+++++|+.+.+.
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~-lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANT-LKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH-HHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 1122222333344445555 5999999999999874 78876 78889999999999999999999999987653
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.39 E-value=0.27 Score=59.25 Aligned_cols=40 Identities=18% Similarity=0.397 Sum_probs=32.7
Q ss_pred HHHHHHhhhh-hhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 382 RIKEITKNSR-KVDTDIERILKETRELQLESNSIQERLHRT 421 (762)
Q Consensus 382 RI~Eiv~nir-KQ~~eI~Kil~dtr~lqkein~~~~~l~Rt 421 (762)
++...+.++. .++.++.+-..+.+.++.|+..+..++.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6777777777 467888888899999999998888888764
No 78
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.39 E-value=0.013 Score=62.91 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhhe
Q 041515 601 VVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAV 662 (762)
Q Consensus 601 l~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~l 662 (762)
+...+...+.+.++++.+++...++. ...|++ ++++++++||++++..+++.+++++|+++
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~-~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALR-NTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeec-ccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 33557788889999999998888887 468876 88899999999999999999999999875
No 79
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.36 E-value=1.2 Score=45.13 Aligned_cols=173 Identities=23% Similarity=0.265 Sum_probs=83.0
Q ss_pred hhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHH
Q 041515 255 TSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQA 334 (762)
Q Consensus 255 ~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~ 334 (762)
...+..+.++...+++.++.+.+ -=++|...+.+....+..+++--+.+ ..+.++..+|+..++.-+.+...
T Consensus 14 ~~~n~~L~~en~kL~~~ve~~ee-------~na~L~~e~~~L~~q~~s~Qqal~~a-K~l~eEledLk~~~~~lEE~~~~ 85 (193)
T PF14662_consen 14 QLNNQKLADENAKLQRSVETAEE-------GNAQLAEEITDLRKQLKSLQQALQKA-KALEEELEDLKTLAKSLEEENRS 85 (193)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777666 22455555555555555553222222 22344444444433333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSI 414 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~ 414 (762)
-+.+-+.++.+.+.+..++.+-.+...+| ..+..+...++.+|..+.-.+
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl------------------------------~~e~~~lk~~~~eL~~~~~~L 135 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKL------------------------------LAERDGLKKRSKELATEKATL 135 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------------------HHhhhhHHHHHHHHHHhhHHH
Confidence 22222222222222222222222222222 233344444444444444444
Q ss_pred HHHH---HHHHHHHHHHHHhhcCccch-HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041515 415 QERL---HRTYAVVDDMIFREAKKDQS-FEQVSEKILATDRVRREIAEYEKKLAA 465 (762)
Q Consensus 415 ~~~l---~Rtf~v~delif~~akkd~~-~~~l~~~i~~tg~~~rei~~le~qi~~ 465 (762)
+.++ ++.+...|.++-...++-+. ...|.+--.-|-.++.||..||+|+..
T Consensus 136 q~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 136 QRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555 44555556666655555333 344444445566788899999998854
No 80
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.31 E-value=1.9 Score=50.84 Aligned_cols=216 Identities=15% Similarity=0.158 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHH--HH--HHHhhc---hHH--HHHH---HHHHHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRS--LE--ESLYAN---ELE--AQAK---LLKLREVELERQSVL 350 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~--l~--~~~~~~---~~e--~~~k---~~~ik~~~~~~~~~~ 350 (762)
..-++.|+..|.++......|..|....|..|-.++-. |+ +++.+. +.| ++.. -.-||.+|.++|+.+
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~e 487 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAE 487 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 45577888888888888888888887777777655322 22 122211 111 1111 225788999999888
Q ss_pred HHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 041515 351 SEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQE---RLHRTYAVVDD 427 (762)
Q Consensus 351 ~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~---~l~Rtf~v~de 427 (762)
--..++-+++.+|..+.+++....-=+.-+.|. ...||+|-..+..++=.|.-.+|-.+..++. .+.++|.-..-
T Consensus 488 tl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~--~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 488 TLEEKKGELITKLQSEENKLKSILRDKEETEKL--LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 888888999999999888764422222222222 2345555555555554444444444433333 34455544332
Q ss_pred --HHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc-cchhhhhhhHHHHHHHhhhhhhhccCCCch
Q 041515 428 --MIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRS-LNVDKLQADVDVIMKENEFLEQQFHRDGRA 500 (762)
Q Consensus 428 --lif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~-~nle~i~~D~~~i~~en~~~~s~~g~~~~~ 500 (762)
-.-.-+|.|+.-.+=-+.+...|.++...+--|-+...-..-- --.+.+.+-|++-..++..+-..-|...|.
T Consensus 566 Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrP 641 (961)
T KOG4673|consen 566 DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRP 641 (961)
T ss_pred hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccH
Confidence 2334445555432222223333333333333333332221111 223344555555555555554555555543
No 81
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.31 E-value=0.069 Score=49.69 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHHHHhh-hHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 599 LGVVMSFATGLANTSLKHNSVGFYQMSKIA-VTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 599 lgl~~~l~i~l~N~SL~yvsVs~~qmlKsa-s~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
.-+++.++..+-..+++++|++..-.+-+. .+..++++++++|||++++.+++++.++++|+++...
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344567778888889999999986655532 3445688899999999999999999999999998754
No 82
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.25 E-value=0.68 Score=61.15 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=42.8
Q ss_pred hhhhhhhhhhhHHHHHhhhh-----cCCcccccccccccCChhHHHHHHhhhhhhhcC----CCCCCCCCCh-hHHHHHH
Q 041515 35 RKTQSKMEESEVILLNSLKS-----GGVSIPADVSSIKDLTSETLVSICGQSLNLIFN----TMTFGTSLPH-SMAEKFK 104 (762)
Q Consensus 35 ~~~~~~MeE~D~ii~~sl~~-----~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p----~~~l~~~lP~-~msaRfr 104 (762)
+...+-+-|.=.=+|++|+. +=|-||.+...=..++...|-. =.+|=-+... --|+|..+|- ---+||.
T Consensus 637 ~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~-QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~ 715 (1930)
T KOG0161|consen 637 RTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLN-QLRCNGVLEGIRICRQGFPNRMPFQEFRQRYE 715 (1930)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHH-HhhccCcHHHHHHHHhhCccccchHHHHHhHH
Confidence 33444555555556666544 5677787666555666665433 3444222211 1136666554 3445555
Q ss_pred hhHHHHHHHHhcCCCC
Q 041515 105 ICTDISSAIKNLGYIG 120 (762)
Q Consensus 105 ~~~~lA~a~k~~Gy~~ 120 (762)
-+|.....-||-+
T Consensus 716 ---lla~~~~~~~~~d 728 (1930)
T KOG0161|consen 716 ---LLAADEPKKGFSD 728 (1930)
T ss_pred ---hhhhhhccccccc
Confidence 5566666666655
No 83
>PRK03918 chromosome segregation protein; Provisional
Probab=96.18 E-value=1 Score=56.11 Aligned_cols=9 Identities=11% Similarity=0.054 Sum_probs=3.5
Q ss_pred HHHHHhhhh
Q 041515 74 LVSICGQSL 82 (762)
Q Consensus 74 ~v~~~~~cl 82 (762)
+++|+.-||
T Consensus 39 il~ai~~~l 47 (880)
T PRK03918 39 ILEAILVGL 47 (880)
T ss_pred HHHHHHHHh
Confidence 344443333
No 84
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.14 E-value=0.15 Score=53.55 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=60.9
Q ss_pred chhHHHHHHHHHH-HHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeec
Q 041515 592 PFSSLFALGVVMS-FATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVT 666 (762)
Q Consensus 592 ~~~~l~plgl~~~-l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~ 666 (762)
.+..+...+++.+ ....+.+.+++..+++..+++- .+.|++ +++++++++|+++...+++.+++++|+.+....
T Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4555666676655 4788889999999999999987 578887 556999999999999999999999999876543
No 85
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.11 E-value=0.061 Score=59.48 Aligned_cols=64 Identities=19% Similarity=0.368 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCc
Q 041515 605 FATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDL 668 (762)
Q Consensus 605 l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~ 668 (762)
+...+..+.+++.+..+..+.-..+.|..++++.+++|++++|.-++|.+++++|+++....+.
T Consensus 245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 3334556677777777766665434555588899999999999999999999999999987654
No 86
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.07 E-value=1.4 Score=56.68 Aligned_cols=38 Identities=29% Similarity=0.491 Sum_probs=21.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 392 KVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMI 429 (762)
Q Consensus 392 KQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~deli 429 (762)
.=..++..+..+...++++++++...++|.=.-..++.
T Consensus 387 ~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~ 424 (1163)
T COG1196 387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLK 424 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666677777777776666555544443
No 87
>PRK01156 chromosome segregation protein; Provisional
Probab=96.01 E-value=3 Score=52.22 Aligned_cols=87 Identities=11% Similarity=0.276 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHH---HHHHhhHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESL-YANELEAQAKLLKLREVELERQSVL---SEIRKRED 358 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~-~~~~~e~~~k~~~ik~~~~~~~~~~---~e~~~k~e 358 (762)
.+++.+++..+.....++.+|..+=++.+..+.. +....+.+ .....+...+..++++++.+++.+. .++..+..
T Consensus 468 ~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~ 546 (895)
T PRK01156 468 NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD-LKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHD 546 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544333333321 11111111 0112223334445556666655554 33444445
Q ss_pred HHHHHHHHHhcC
Q 041515 359 EYSKLSADLEKQ 370 (762)
Q Consensus 359 ~~~~L~~~~~~~ 370 (762)
.|..+..+++.+
T Consensus 547 ~~~~l~~~~~~~ 558 (895)
T PRK01156 547 KYEEIKNRYKSL 558 (895)
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 88
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.93 E-value=2.8 Score=51.49 Aligned_cols=148 Identities=19% Similarity=0.237 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc--cChHHHH---------HHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV--ASRRSYI---------ERIKEITKNSRKVDTDIERILKETRE 406 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~--~~R~~Yt---------~RI~Eiv~nirKQ~~eI~Kil~dtr~ 406 (762)
+++.++.++.++......-+++.+.|..|.+++-+. ..+.+|- +|.+..-... .++..+-..+++.
T Consensus 416 k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~---~~et~el~~~ikn 492 (1195)
T KOG4643|consen 416 KHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQL---EAETEELLNQIKN 492 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 455566666666666666677777777777776442 2222222 2233222222 2334444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHH----HHHHHHhhHHHHHHHHHHHHHHHHhc--cc-cchhhhhhh
Q 041515 407 LQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQV----SEKILATDRVRREIAEYEKKLAAVAS--RS-LNVDKLQAD 479 (762)
Q Consensus 407 lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l----~~~i~~tg~~~rei~~le~qi~~~~~--k~-~nle~i~~D 479 (762)
+-+-+|.-..-+.|--+..+++.-+.-+.|...+.+ -+.=+.-|...+|=+.|-.||-.... .+ .+||+...|
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~ 572 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNND 572 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
Confidence 666666666666666666666666655555543322 22234578999999999999999887 44 888888888
Q ss_pred HHHHHHHhh
Q 041515 480 VDVIMKENE 488 (762)
Q Consensus 480 ~~~i~~en~ 488 (762)
...+-+|.+
T Consensus 573 lE~~~~elk 581 (1195)
T KOG4643|consen 573 LELIHNELK 581 (1195)
T ss_pred HHHHHHHHH
Confidence 876665544
No 89
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.93 E-value=0.59 Score=49.23 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSK 362 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~ 362 (762)
-..+-+|+ .++....++..... |..+.+..++.++............++++++.+..++..+++.-.+..+.
T Consensus 6 ~~~L~~iq-~lD~e~~rl~~~~~-------~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 6 LKSLLAIQ-KLDLEKDRLEPRIK-------EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHH-HHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566 56666666665544 33333444444433333333334457788888999999999988888999
Q ss_pred HHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 363 LSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVD 426 (762)
Q Consensus 363 L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~d 426 (762)
.+..+.......-.++|.+.|-....++..=+.||..+......+++++..+.+++.++-.-+-
T Consensus 78 ~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 78 AEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877777788889999999999999999999999999999999999999999888755443
No 90
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=1.5 Score=53.75 Aligned_cols=92 Identities=14% Similarity=0.309 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc--cChHH---HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV--ASRRS---YIERIKEITKNSRKVDTDIERILKETRELQLES 411 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~--~~R~~---Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkei 411 (762)
.+|+...+++++-..+..+++..++.|+-+.+.+.+. ...+. -..-|-++...+-.++..+.++-.|...+|.++
T Consensus 794 keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el 873 (1174)
T KOG0933|consen 794 KEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAEL 873 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 3566666777777788888899999999998888774 22222 234566677788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041515 412 NSIQERLHRTYAVVDDM 428 (762)
Q Consensus 412 n~~~~~l~Rtf~v~del 428 (762)
|-...++.-.-+.++.+
T Consensus 874 ~~~k~k~~~~dt~i~~~ 890 (1174)
T KOG0933|consen 874 KDQKAKQRDIDTEISGL 890 (1174)
T ss_pred HHHHHHHHhhhHHHhhh
Confidence 99888876655555444
No 91
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.85 E-value=2.2 Score=51.11 Aligned_cols=133 Identities=12% Similarity=0.189 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH-----HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515 344 LERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS-----YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 344 ~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~-----Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l 418 (762)
.+-..+-.|+-.|+++.+.++.+++.+.+...|.. -|+=...=+.-...|+.||. .+..+-..-.+...+++
T Consensus 277 ~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadir---c~LlEarrk~egfddk~ 353 (1265)
T KOG0976|consen 277 AKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIR---CALLEARRKAEGFDDKL 353 (1265)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcchhHHH
Confidence 34445566777788888888888887766544432 22323333444555555554 34444444455555554
Q ss_pred HHHHHHHHHHHHhhcCccch------HHHHHHHHHHh-hHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhhh
Q 041515 419 HRTYAVVDDMIFREAKKDQS------FEQVSEKILAT-DRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEF 489 (762)
Q Consensus 419 ~Rtf~v~delif~~akkd~~------~~~l~~~i~~t-g~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~~ 489 (762)
+--- -|+|.. ..+..+++++- -.+.-+..+++.|||..+.+--.+|.+..|....++|-+.
T Consensus 354 ~eLE----------Kkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~ 421 (1265)
T KOG0976|consen 354 NELE----------KKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQE 421 (1265)
T ss_pred HHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHH
Confidence 4221 122332 23444444432 3556667888999998887778899999998888887653
No 92
>PF13514 AAA_27: AAA domain
Probab=95.75 E-value=3.4 Score=53.14 Aligned_cols=134 Identities=17% Similarity=0.306 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515 333 QAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN 412 (762)
Q Consensus 333 ~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein 412 (762)
.....+++.++.++..+..++..-++....|...+..-....+-......+.+..+..+...+.+.+.-.+...++.++.
T Consensus 739 ~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~ 818 (1111)
T PF13514_consen 739 REALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELE 818 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777778888887787777777777653222323367788888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 041515 413 SIQERLHRTYAVVDDMIFREAKK--DQSFEQVSEKILATDRVRREIAEYEKKLAAVA 467 (762)
Q Consensus 413 ~~~~~l~Rtf~v~delif~~akk--d~~~~~l~~~i~~tg~~~rei~~le~qi~~~~ 467 (762)
.....+.-.-..+++++ ..+.. .+.+.++.+...+--.+..++.+++.++....
T Consensus 819 ~~~~~l~~~~~~l~~L~-~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 874 (1111)
T PF13514_consen 819 QAEEELEELEAELAELL-EQAGVEDEEELREAEERAEERRELREELEDLERQLERQA 874 (1111)
T ss_pred HHHHHHHHHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999888888887764 43333 33566777777777777888888888885443
No 93
>PRK11637 AmiB activator; Provisional
Probab=95.72 E-value=4.4 Score=46.41 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLS 364 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~ 364 (762)
+|..++.++.....++....+.+.++.
T Consensus 104 ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444433
No 94
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.65 E-value=0.11 Score=56.44 Aligned_cols=135 Identities=11% Similarity=0.078 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc---CCC-CCCCC--CCccchhHHHHHHHHH
Q 041515 530 VAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF---SII-PVSPP--AITTPFSSLFALGVVM 603 (762)
Q Consensus 530 ~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~---~~~-~~~~~--~~~~~~~~l~plgl~~ 603 (762)
+.++++.++......+.+.++..++.+ |.-..++..+.+.++..+.... +.. +..+. .....+..++..+++.
T Consensus 157 ~ll~~sl~~~a~~~~~qe~~~~~~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~ 235 (303)
T PF08449_consen 157 ILLLLSLLLDAFTGVYQEKLFKKYGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTG 235 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456667777777788899999887776 7777776666666665544322 111 10000 0011234455555555
Q ss_pred HHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 604 SFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 604 ~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
.++..+-+...+..+....+++..+--+++++++.+++|+++++..|+|++++++|..+...
T Consensus 236 ~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 236 ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 55555555556666666666665444667788999999999999999999999999887654
No 95
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.56 E-value=0.096 Score=56.70 Aligned_cols=70 Identities=7% Similarity=0.111 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHH----HHHHHHHHhhheeee
Q 041515 595 SLFALGVVMSFATGLANTSLK-HNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKV----LALAIVSVGVAVATV 665 (762)
Q Consensus 595 ~l~plgl~~~l~i~l~N~SL~-yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~----lsLlli~~GV~la~~ 665 (762)
..+..|++..+...+...+++ +++++.+.++- ...|++ ++.+++++||+.+++.+ ++.+++++|+.+.+.
T Consensus 213 ~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls-~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 213 LNILPGLMWGIGNFFYLFSAQPKVGVATSFSLS-QLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccchhhHHHHH-HHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 344477777777777778889 99999999886 467887 78899999999999999 999999999887653
No 96
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.55 E-value=7.4 Score=46.36 Aligned_cols=136 Identities=15% Similarity=0.269 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 041515 346 RQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR---TY 422 (762)
Q Consensus 346 ~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R---tf 422 (762)
.+.+.+++..-++.+..+...+.... .+-+.-..+.-++.+.+..=+++..++......|+++......++.+ ..
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~--~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQE--IAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333222 22444445555665555555555555555555555555555555544 33
Q ss_pred HHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhhhh
Q 041515 423 AVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFL 490 (762)
Q Consensus 423 ~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~~~ 490 (762)
.-+...+-+.. -..-....+.... .+.++|+.|..+++. .+-|++.|...+.++..+-+.|
T Consensus 428 ~~ikr~l~k~~-lpgip~~y~~~~~---~~~~~i~~l~~~L~~---g~VNm~ai~~e~~e~~~~~~~L 488 (569)
T PRK04778 428 HEIKRYLEKSN-LPGLPEDYLEMFF---EVSDEIEALAEELEE---KPINMEAVNRLLEEATEDVETL 488 (569)
T ss_pred HHHHHHHHHcC-CCCCcHHHHHHHH---HHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHH
Confidence 22222222110 0112333344443 456778888888876 3466666665555555554444
No 97
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.46 E-value=7.3 Score=45.73 Aligned_cols=17 Identities=24% Similarity=0.770 Sum_probs=12.4
Q ss_pred hcCCCCCCcccccccCC
Q 041515 115 NLGYIGDISYYKFLYPS 131 (762)
Q Consensus 115 ~~Gy~~digy~tfLY~~ 131 (762)
..|++.-=-||||.+..
T Consensus 44 KVGw~s~rdY~Tf~Wa~ 60 (546)
T PF07888_consen 44 KVGWSSTRDYYTFVWAP 60 (546)
T ss_pred ecCCCchhheeeEEeec
Confidence 35777667799998764
No 98
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.45 E-value=3.9 Score=47.59 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccC------hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHH
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVAS------RRSYIERIKEITKNSRKVDTDIERILKETRELQL 409 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~------R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqk 409 (762)
..++.+++++...+..++...+..+..|++.+...|.... -+.+..++.++-..+.-......-==-+.+.+++
T Consensus 203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~ 282 (498)
T TIGR03007 203 YSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKR 282 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 4567777888888888888888888888887776544321 2234455544333332222211111123456666
Q ss_pred HHHHHHHHHH
Q 041515 410 ESNSIQERLH 419 (762)
Q Consensus 410 ein~~~~~l~ 419 (762)
++..+...+.
T Consensus 283 qi~~l~~~l~ 292 (498)
T TIGR03007 283 EIAQLEEQKE 292 (498)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 99
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=2.3 Score=53.06 Aligned_cols=88 Identities=14% Similarity=0.223 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc---cChHH---HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515 339 LREVELERQSVLSEIRKREDEYSKLSADLEKQPKV---ASRRS---YIERIKEITKNSRKVDTDIERILKETRELQLESN 412 (762)
Q Consensus 339 ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~---~~R~~---Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein 412 (762)
|.+++.+..++.++.-+ ++.+++|+..+.++.+. .+|.. --+||-....+|+|+..-|.+-=.+....|+.++
T Consensus 867 ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~ 945 (1293)
T KOG0996|consen 867 IEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLS 945 (1293)
T ss_pred HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHH
Confidence 44444455544433332 55566666666665543 11111 2244444445555555555444444445555555
Q ss_pred HHHHHHHHHHHHHHH
Q 041515 413 SIQERLHRTYAVVDD 427 (762)
Q Consensus 413 ~~~~~l~Rtf~v~de 427 (762)
.+....+++--.+|+
T Consensus 946 ~le~~~~~~e~e~~~ 960 (1293)
T KOG0996|consen 946 ELEREIEDTEKELDD 960 (1293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554444444443
No 100
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.13 E-value=7.4 Score=47.82 Aligned_cols=166 Identities=14% Similarity=0.221 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH-----HHHHHHHHHhhhhhhHHhH-------HHHHHHHHHH
Q 041515 340 REVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS-----YIERIKEITKNSRKVDTDI-------ERILKETREL 407 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~-----Yt~RI~Eiv~nirKQ~~eI-------~Kil~dtr~l 407 (762)
.+++.-+..+.+.++.|++.+..|..+++.+--..-|.. .+..|.++..-.--+..|| .+--.+++.|
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888888888875533221211 2333333332222222222 2222233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccchHH--HHHHHHHH-hhHHHHHHHHHHHHHHHHhc-cccchhhhhhhHHHH
Q 041515 408 QLESNSIQERLHRTYAVVDDMIFREAKKDQSFE--QVSEKILA-TDRVRREIAEYEKKLAAVAS-RSLNVDKLQADVDVI 483 (762)
Q Consensus 408 qkein~~~~~l~Rtf~v~delif~~akkd~~~~--~l~~~i~~-tg~~~rei~~le~qi~~~~~-k~~nle~i~~D~~~i 483 (762)
|+.|.++.+.|.+--.-+++.-=+-.-+-.+|. ...+.+++ .+...|-+..|+.+.+.... +...++...+.++..
T Consensus 398 q~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~l 477 (775)
T PF10174_consen 398 QKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKEL 477 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444433333333222221111111 11122221 12222233344444333332 226678888888888
Q ss_pred HHHhhhhhhhccCCCchhHHHh
Q 041515 484 MKENEFLEQQFHRDGRALEEIR 505 (762)
Q Consensus 484 ~~en~~~~s~~g~~~~~~~~~~ 505 (762)
+.+++.|+++-++..-.+++++
T Consensus 478 k~~~~~LQ~eLsEk~~~l~~~k 499 (775)
T PF10174_consen 478 KAKLESLQKELSEKELQLEDAK 499 (775)
T ss_pred HHHHHHHhhhhHHHHHHHHHhh
Confidence 8999999988888776666543
No 101
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.01 E-value=0.46 Score=51.88 Aligned_cols=69 Identities=9% Similarity=0.172 Sum_probs=57.7
Q ss_pred HHHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 597 FALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 597 ~plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
..+|++ ++++.+++..|+.+.|.+..+-+-+...++.++++.+++||++++..+.+++++++|+++...
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 334544 567778889999999999999888655666689999999999999999999999999887554
No 102
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.84 E-value=4.9 Score=42.37 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=13.9
Q ss_pred HHhhhhhcccCcHHHHHHHHHHHHHhcCC
Q 041515 250 AVTAKTSELCDPEEEYQLLKAAAEMAFDD 278 (762)
Q Consensus 250 ~~~~~~~~~~e~e~~~~~~~~~~e~l~d~ 278 (762)
++..........+.++..+.+-+.++.++
T Consensus 23 ~l~~~~~~~~~aE~e~~~l~rri~~lE~~ 51 (237)
T PF00261_consen 23 KLKEAEKRAEKAEAEVASLQRRIQLLEEE 51 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445555555555555555543
No 103
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.79 E-value=1.4 Score=54.97 Aligned_cols=80 Identities=9% Similarity=0.150 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAE 458 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~ 458 (762)
|+.|=-..++++..-+.-+...-.+..+-+.+++.+.+.+.+.=...++ .-+.+-+...+.+.+.+....
T Consensus 512 L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~----------~~k~l~~~~~e~~~~~~~~~~ 581 (1293)
T KOG0996|consen 512 LLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKE----------KEKELPKLRKEERNLKSQLNK 581 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----------HHHhHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666666666654333332 223344444455555555555
Q ss_pred HHHHHHHHhc
Q 041515 459 YEKKLAAVAS 468 (762)
Q Consensus 459 le~qi~~~~~ 468 (762)
+-.++++.++
T Consensus 582 ~rqrveE~ks 591 (1293)
T KOG0996|consen 582 LRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 104
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.72 E-value=6.3 Score=46.25 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=37.6
Q ss_pred HHHHhhhhhcccCcHHHHHHHHH-------------------HHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHH
Q 041515 248 MEAVTAKTSELCDPEEEYQLLKA-------------------AAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWD 308 (762)
Q Consensus 248 ~~~~~~~~~~~~e~e~~~~~~~~-------------------~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe 308 (762)
+++|-..+.|+..++-.+...+. +-.++.+ ...-.++++..+......+.+|...|+
T Consensus 55 IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e----~~~~ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 55 IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDE----TARERAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56666666666666666666663 1222333 455666777777777777777777777
Q ss_pred Hh
Q 041515 309 AL 310 (762)
Q Consensus 309 ~~ 310 (762)
+.
T Consensus 131 ~~ 132 (546)
T KOG0977|consen 131 KA 132 (546)
T ss_pred HH
Confidence 65
No 105
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.61 E-value=8.4 Score=47.35 Aligned_cols=217 Identities=21% Similarity=0.274 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH-----------------HhhchHHHHHHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEES-----------------LYANELEAQAKLLKLREVELE 345 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~-----------------~~~~~~e~~~k~~~ik~~~~~ 345 (762)
-.-++.|+..+.+..++-..|...-|..|..|.++...+..+ +....+....+-.+|..++.+
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666665554444332 111112222223355666677
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHH-----HHHHH---HHhhhhhh--------HHhHHHHHHHHHHHHH
Q 041515 346 RQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYI-----ERIKE---ITKNSRKV--------DTDIERILKETRELQL 409 (762)
Q Consensus 346 ~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt-----~RI~E---iv~nirKQ--------~~eI~Kil~dtr~lqk 409 (762)
+..+.+.++.|+.....++..+..-|. .++.-+. .=+.| +++.++.| .+++.+--.+.+.+.-
T Consensus 401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d-~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~ 479 (775)
T PF10174_consen 401 IENLEEQLREKDRQLDEEKERLSSQAD-SSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKA 479 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888887433 3333222 11111 12222222 4666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HhhcCccch--------------HHHHH---HHHHHhhHHHHHHHHHHHHHHH
Q 041515 410 ESNSIQERLHRTYAVVDDMI-------FREAKKDQS--------------FEQVS---EKILATDRVRREIAEYEKKLAA 465 (762)
Q Consensus 410 ein~~~~~l~Rtf~v~deli-------f~~akkd~~--------------~~~l~---~~i~~tg~~~rei~~le~qi~~ 465 (762)
++++++..|+..=+-+++.= =.--|+|.. |..+. +..+....+..+|+.||..+..
T Consensus 480 ~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~ 559 (775)
T PF10174_consen 480 KLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTR 559 (775)
T ss_pred HHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHH
Confidence 77777777766655554321 000111111 22222 2233345666778888886644
Q ss_pred Hh---ccc-cchhhhhhhHHHHHHHhhhhhhhccCCCch
Q 041515 466 VA---SRS-LNVDKLQADVDVIMKENEFLEQQFHRDGRA 500 (762)
Q Consensus 466 ~~---~k~-~nle~i~~D~~~i~~en~~~~s~~g~~~~~ 500 (762)
-. ++. .-+|++.+-++.+.+|+...+...|+-...
T Consensus 560 ~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 560 YREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 32 233 669999999999999998776666653333
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=8.1 Score=46.79 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-CCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 041515 329 ELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQ-PKVASRRSYIERIKEITKNSRKVDTDIERILKETREL 407 (762)
Q Consensus 329 ~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~-~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~l 407 (762)
..|-.+-+.+.+++..+...+..++.+|++..++.++.-+.. .+..+-..--++=..++.-.++|.++=.+-.+--.++
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~ 815 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSEL 815 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 344444555667777777777788888888888877666522 1112222233444455555555666655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041515 408 QLESNSIQERLHRTYAVVDDM 428 (762)
Q Consensus 408 qkein~~~~~l~Rtf~v~del 428 (762)
++--+..+..++||=++.|++
T Consensus 816 ~~~keq~~t~~~~tsa~a~~l 836 (970)
T KOG0946|consen 816 TQLKEQIQTLLERTSAAADSL 836 (970)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 556666677888998888875
No 107
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.51 E-value=3.9 Score=47.92 Aligned_cols=87 Identities=14% Similarity=0.183 Sum_probs=42.9
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHH
Q 041515 388 KNSRKVDTDIERILKETRELQLESNSIQERLH----RTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKL 463 (762)
Q Consensus 388 ~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~----Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi 463 (762)
..+..+..|-++.+...+.++.+.......+. .+=+-..+...+ .-..-.+...++.++|.+++++
T Consensus 230 ~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~----------~~~~~~e~e~LkeqLr~~qe~l 299 (546)
T PF07888_consen 230 KTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQ----------AQQLQQENEALKEQLRSAQEQL 299 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHHHHHHHHHHHHHH
Confidence 34444446666667777777666666554433 221111111111 1122244456777788888887
Q ss_pred HHHhccccchhhhhhhHHHHH
Q 041515 464 AAVASRSLNVDKLQADVDVIM 484 (762)
Q Consensus 464 ~~~~~k~~nle~i~~D~~~i~ 484 (762)
.+-.++..-|.+=..|...++
T Consensus 300 qaSqq~~~~L~~EL~~~~~~R 320 (546)
T PF07888_consen 300 QASQQEAELLRKELSDAVNVR 320 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 766554433333333333333
No 108
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.41 E-value=2.1 Score=50.87 Aligned_cols=148 Identities=13% Similarity=0.242 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH---HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESL---EEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED 358 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl---~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e 358 (762)
-.+...+++..+.....+...+...++.+..|= .++++++.+.+..-+.+...-.+.++.++.+-+.+.+.+..-..
T Consensus 342 e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 342 ELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999888888764 55566666655554444343444566666666555555555555
Q ss_pred HHHHHHHHHhcC--CCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515 359 EYSKLSADLEKQ--PKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFR 431 (762)
Q Consensus 359 ~~~~L~~~~~~~--~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~ 431 (762)
.....+..+++. |+-+ ..|...+......|.+=.++++++--|...+++.++..++.+++.+.-|+++|-.
T Consensus 422 ~l~~ikR~lek~nLPGlp--~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~ 494 (560)
T PF06160_consen 422 KLREIKRRLEKSNLPGLP--EDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDN 494 (560)
T ss_pred HHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544 5522 5688899999999999999999999999999999999999999999888888753
No 109
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.38 E-value=14 Score=43.41 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=41.4
Q ss_pred HHhhHHHHHHHHhcCCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515 103 FKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERL 146 (762)
Q Consensus 103 fr~~~~lA~a~k~~Gy~~digy~tfLY~~~~dlr~l~~fLiekL 146 (762)
=.++..|-+++.+-||.+.+|-+-.--|+.+|.-.+|=||-.+|
T Consensus 73 s~c~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~L 116 (581)
T KOG0995|consen 73 SQCIRQIYNFLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFL 116 (581)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhhcCCCccccHHHHHHHHHhcc
Confidence 34678899999999999999999999999999999999999999
No 110
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.35 E-value=3.9 Score=50.91 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Q 041515 378 SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKI 446 (762)
Q Consensus 378 ~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i 446 (762)
.-++=|-+++.+|+--++.+.||.++|....+-.++.+.++..-.++++++-.+-++-+..++++-+.+
T Consensus 1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a 1649 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTA 1649 (1758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 346778999999999999999999999999999999999999999999999999999998776664443
No 111
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.32 E-value=8 Score=42.09 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 377 RSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 377 ~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R 420 (762)
..|..++-++-....+........-.|.+.+++.++++...++.
T Consensus 191 ~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~ 234 (312)
T PF00038_consen 191 EWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELES 234 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhc
Confidence 56888999998888888888888888888888888888888776
No 112
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.21 E-value=4.7 Score=48.16 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.7
Q ss_pred cccccccCChHHHHHHHHHHHHHh
Q 041515 123 SYYKFLYPSEEDLYKLIRFLVERL 146 (762)
Q Consensus 123 gy~tfLY~~~~dlr~l~~fLiekL 146 (762)
|+...|-|+...-.++.+-|.+.+
T Consensus 52 ~l~~~lP~~msaRfr~~~~lA~~~ 75 (594)
T PF05667_consen 52 SLPRSLPPGMSARFRVGTSLAQAC 75 (594)
T ss_pred CCcccCChHHHHHHHHHHHHHHHH
Confidence 778888888899999999999988
No 113
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.10 E-value=6.8 Score=49.35 Aligned_cols=74 Identities=26% Similarity=0.249 Sum_probs=43.5
Q ss_pred HHhhhhcCCc---c-ccccc-------ccccCChhHHH--HHHhhhhhhhcCCCCCCCCCChhHHHHHHhhHHHHHHHHh
Q 041515 49 LNSLKSGGVS---I-PADVS-------SIKDLTSETLV--SICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKN 115 (762)
Q Consensus 49 ~~sl~~~g~~---~-~~~~~-------sl~~ftte~~v--~~~~~cl~~I~p~~~l~~~lP~~msaRfr~~~~lA~a~k~ 115 (762)
|+++|++|.. | ||+|= -|.+|-+=+=. ++.|+| +-..|-|.++.|-. ++.
T Consensus 188 ldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s----~~aVGTPDYISPEv-------------Lqs 250 (1317)
T KOG0612|consen 188 LDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRS----SVAVGTPDYISPEV-------------LQS 250 (1317)
T ss_pred HHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEe----ccccCCCCccCHHH-------------HHh
Confidence 6778887764 3 44431 26667553311 233333 22346888877743 233
Q ss_pred c-CCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515 116 L-GYIGDISYYKFLYPSEEDLYKLIRFLVERL 146 (762)
Q Consensus 116 ~-Gy~~digy~tfLY~~~~dlr~l~~fLiekL 146 (762)
. |++| -||-+-|.=++=+|+-|-|
T Consensus 251 ~~~~~g-------~yG~ecDwWSlGV~~YEMl 275 (1317)
T KOG0612|consen 251 QGDGKG-------EYGRECDWWSLGVFMYEML 275 (1317)
T ss_pred hcCCcc-------ccCCccchhhhHHHHHHHH
Confidence 3 2223 2888888888888888888
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.00 E-value=7.5 Score=47.05 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH---HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK---KRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED 358 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~---~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e 358 (762)
....+++|+..+.....+..++.++|..++..+.+- +++++++......+ ..++.++++.+++++..++...++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~---~~~~r~~Le~ei~~le~e~~e~~~ 283 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD---LFEEREQLERQLKEIEAARKANRA 283 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888887776444 44444433322111 122233444455555554444444
Q ss_pred HHHH
Q 041515 359 EYSK 362 (762)
Q Consensus 359 ~~~~ 362 (762)
...+
T Consensus 284 ~l~~ 287 (650)
T TIGR03185 284 QLRE 287 (650)
T ss_pred HHHH
Confidence 3333
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=16 Score=44.05 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=34.7
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R 420 (762)
-|+-|+...-.+++++|.+.=.--++||-|+..+++|++-
T Consensus 416 ar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 416 ARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999888888899999888888764
No 116
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=93.89 E-value=0.35 Score=43.49 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhhcchhHHH-HHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHH
Q 041515 601 VVMSFATGLANTSLKHNSVGFY-QMSKIAVTPTIVLAEFILFSKTISYKKVLALAIV 656 (762)
Q Consensus 601 l~~~l~i~l~N~SL~yvsVs~~-qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli 656 (762)
++++++..+-..+++++|++.. .+........+++++.++|||++|+.+++++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3677888899999999999985 5454334445688899999999999999998875
No 117
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.80 E-value=8.5 Score=46.89 Aligned_cols=90 Identities=18% Similarity=0.334 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhh----HHhHHHHHHHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKV----DTDIERILKETRELQLESNS 413 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ----~~eI~Kil~dtr~lqkein~ 413 (762)
+.++++.+++.+..|++.|||....|+.+.. .+|++ ..|++-.+.....+|..-..
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~--------------------~lr~~~~e~~~~~e~L~~aL~amqdk~~~ 605 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQ--------------------ELRKYEKESEKDTEVLMSALSAMQDKNQH 605 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5577777888888888888888888877772 22232 23444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 041515 414 IQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLA 464 (762)
Q Consensus 414 ~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~ 464 (762)
+...|. . |+ .-=.+.....|..+|++..++.+|-
T Consensus 606 LE~sLs------a----------Et-riKldLfsaLg~akrq~ei~~~~~~ 639 (697)
T PF09726_consen 606 LENSLS------A----------ET-RIKLDLFSALGDAKRQLEIAQGQLR 639 (697)
T ss_pred HHHhhh------H----------HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221 0 00 0014566778999999999888876
No 118
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.78 E-value=5.8 Score=44.26 Aligned_cols=97 Identities=20% Similarity=0.133 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHH-HHHHHHHHHhcccc-------cHHHHHHHHHHHHhhheeee
Q 041515 594 SSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTP-TIVLAEFILFSKTI-------SYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 594 ~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P-~~vll~~l~lgek~-------s~~~~lsLlli~~GV~la~~ 665 (762)
..-+..|++.+++..+...|++|+.+|...-+-.-..- +.+++..+++||-. .....++++++++|+++.+.
T Consensus 74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777788888889999888876655432222 23566667777422 24467899999999999888
Q ss_pred ----cCc--------cc-cHHHHHHHHHHHHHHHHHHH
Q 041515 666 ----TDL--------EF-NIFGAIIAVAWIIPSAINKI 690 (762)
Q Consensus 666 ----~d~--------~f-s~~G~ilalls~l~~Al~~V 690 (762)
.|. ++ ...|+++++++.+.++.|..
T Consensus 154 Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 154 AGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred hhhhcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 443 13 36799999999999999994
No 119
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=93.61 E-value=2.8 Score=40.58 Aligned_cols=115 Identities=19% Similarity=0.285 Sum_probs=75.3
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 041515 544 LTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSII-PVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFY 622 (762)
Q Consensus 544 ~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~-~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~ 622 (762)
.+|-.+-...+ .|+.-+++-+.++++++.++...... ..... ++.||..++ -|++-+..+.+.+++...+.++..
T Consensus 18 ~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~-~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~ 93 (138)
T PF04657_consen 18 AFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLASL-SSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALT 93 (138)
T ss_pred HHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccchh-ccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34554444322 48888888888888887665432222 22222 334554333 566666777888888888888887
Q ss_pred HHHHhhhHHHH-HHHHHH-Hhc---ccccHHHHHHHHHHHHhhhe
Q 041515 623 QMSKIAVTPTI-VLAEFI-LFS---KTISYKKVLALAIVSVGVAV 662 (762)
Q Consensus 623 qmlKsas~P~~-vll~~l-~lg---ek~s~~~~lsLlli~~GV~l 662 (762)
+++--+.--+. ++++.+ +++ .++++.++++++++++|+.+
T Consensus 94 ~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 94 TILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 77764333333 677766 454 78999999999999999874
No 120
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.58 E-value=0.62 Score=51.69 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=90.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcc--CCchhHHHHHHHHHH---HHHHHHHHHHcCCCCCCCCCCccchhHHHHH
Q 041515 525 ICGPVVAMTFNFVVSVGIILTNKLVMGQV--GFNFPIFLTVIHYAV---AWILLAIFKAFSIIPVSPPAITTPFSSLFAL 599 (762)
Q Consensus 525 ~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~--gF~~Pl~Lt~~q~l~---a~ill~i~~~~~~~~~~~~~~~~~~~~l~pl 599 (762)
.+|.+.+.+.-..-++=++++ |.-..+. +..-|+++.++..+- .|-.+.++..++ .+..+++....+.-++..
T Consensus 246 llG~llaL~sA~~YavY~vll-k~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~-~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLL-KRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG-EERFELPSSTQFSLVVFN 323 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcccCCCCceeEeeeHh
Confidence 345544433332233333344 4444544 455566666555433 232233444453 333333344445555555
Q ss_pred HHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccc
Q 041515 600 GVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEF 670 (762)
Q Consensus 600 gl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~f 670 (762)
+++ ..++=.++-+|.-..+.-..++.-+.++|..++++.++-|+.+|+.-++|.+++++|.+++.+.+...
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 554 44666777778777777777777777899999999888899999999999999999999998866543
No 121
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.53 E-value=3 Score=49.60 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKES 313 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~p 313 (762)
-...+.+++..++...+++..+...+.....+
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ 377 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITERIAEQEIA 377 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35556677777777777777777777666666
No 122
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.51 E-value=10 Score=40.15 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=34.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 041515 393 VDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKK 435 (762)
Q Consensus 393 Q~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akk 435 (762)
=++++.+|=++...+..+...+..+++.-+--.+|.+-+..|-
T Consensus 147 ~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg 189 (239)
T COG1579 147 LEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKG 189 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Confidence 3455566666667778899999999999999999999888754
No 123
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.48 E-value=7 Score=50.70 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 287 EQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIR 354 (762)
Q Consensus 287 ~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~ 354 (762)
++.+....+..+.+..+.++-+.++....+++.+++....+.-...=..-..|+.++.+++.+..+|+
T Consensus 721 ~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~ 788 (1201)
T PF12128_consen 721 AQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELK 788 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666666666666655442110000012245666666666666665
No 124
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.41 E-value=14 Score=40.20 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhh---HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALK---ESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDE 359 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r---~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~ 359 (762)
-..-++|+..++.....+.++..+|+... ..+..+...++..+. .++. ..-.++.+++.+.+|+.-....
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld---~~~~----~r~~le~~i~~L~eEl~fl~~~ 139 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD---EETL----ARVDLENQIQSLKEELEFLKQN 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---hhhh----hHhHHHHHHHHHHHHHHHHHhh
Confidence 33445666666666666667766666542 233333444443322 1111 1234566777788888777777
Q ss_pred HHHHHHHHh
Q 041515 360 YSKLSADLE 368 (762)
Q Consensus 360 ~~~L~~~~~ 368 (762)
|.+=..++.
T Consensus 140 heeEi~~L~ 148 (312)
T PF00038_consen 140 HEEEIEELR 148 (312)
T ss_dssp HHHHHHTTS
T ss_pred hhhhhhhhh
Confidence 766433333
No 125
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.36 E-value=11 Score=46.06 Aligned_cols=95 Identities=28% Similarity=0.327 Sum_probs=54.2
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 041515 271 AAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVL 350 (762)
Q Consensus 271 ~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~ 350 (762)
++||+-=|.--+|+-.+-||-.++.+++|+.+|.-.-|-.|.++.++ =.+-..-+..++.+|+.--.++|+..
T Consensus 312 ~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek-------G~~~~~~ss~qfkqlEqqN~rLKdal 384 (1243)
T KOG0971|consen 312 AIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK-------GSDGQAASSYQFKQLEQQNARLKDAL 384 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCcccchHHHHHHHHHHHHHHHHH
Confidence 45554333333577777888888888888888877776666666555 00011112223444444444555555
Q ss_pred HHHHh----hHHHHHHHHHHHhcCCC
Q 041515 351 SEIRK----REDEYSKLSADLEKQPK 372 (762)
Q Consensus 351 ~e~~~----k~e~~~~L~~~~~~~~k 372 (762)
-.+|+ .++.+.++.+++|+...
T Consensus 385 VrLRDlsA~ek~d~qK~~kelE~k~s 410 (1243)
T KOG0971|consen 385 VRLRDLSASEKQDHQKLQKELEKKNS 410 (1243)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhh
Confidence 55443 35667777777775433
No 126
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.26 E-value=19 Score=41.26 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=40.4
Q ss_pred HhhHHHHHHHHhcCCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515 104 KICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERL 146 (762)
Q Consensus 104 r~~~~lA~a~k~~Gy~~digy~tfLY~~~~dlr~l~~fLiekL 146 (762)
.+.+.|-.++++-||-+.||-...--|+..+.-.+|=||--+|
T Consensus 108 ~c~~~I~~yL~engfd~pis~k~l~~PS~k~F~~IFK~LY~~l 150 (622)
T COG5185 108 ACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFKWLYLRL 150 (622)
T ss_pred HHHHHHHHHHHHcCCCcchhHHHhcCCccccHHHHHHHHHhcc
Confidence 4678899999999999999998888899999999999999999
No 127
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.24 E-value=19 Score=41.14 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-----------CCc---cChHH-HHHHHHHHHhhhhhhHHhHHHHH
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQ-----------PKV---ASRRS-YIERIKEITKNSRKVDTDIERIL 401 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~-----------~k~---~~R~~-Yt~RI~Eiv~nirKQ~~eI~Kil 401 (762)
.+|..+...++.+..+-+.....+.++..-+.++ |++ ..|.. |.+ .++.-.+.|-+.+.+.+
T Consensus 94 ~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~---~l~~~~~~~i~~l~~~~ 170 (420)
T COG4942 94 KQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYG---ALNPARAERIDALKATL 170 (420)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence 3555555555555444433333333333333333 333 24544 554 34556677777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc-cchhhhhhhH
Q 041515 402 KETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRS-LNVDKLQADV 480 (762)
Q Consensus 402 ~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~-~nle~i~~D~ 480 (762)
.+.+.++.+|...+.++..+-+.-.+ ..........|-..++.|++.+.+.. ..++.+.++=
T Consensus 171 ~~l~~~~~~iaaeq~~l~~~~~eq~~-----------------q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~ 233 (420)
T COG4942 171 KQLAAVRAEIAAEQAELTTLLSEQRA-----------------QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANE 233 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88888888888888887766554433 23333344444444444554444443 4455555555
Q ss_pred HHHHHHhhhhh
Q 041515 481 DVIMKENEFLE 491 (762)
Q Consensus 481 ~~i~~en~~~~ 491 (762)
..++++.+.++
T Consensus 234 ~~L~~~Ias~e 244 (420)
T COG4942 234 SRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHH
Confidence 55555555333
No 128
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.23 E-value=14 Score=43.57 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515 378 SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417 (762)
Q Consensus 378 ~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~ 417 (762)
.|-.+|-+|=+....+-..+++.-++.+.+...++.+.++
T Consensus 272 ~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~k 311 (546)
T KOG0977|consen 272 WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAK 311 (546)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhh
Confidence 3555555554433333333333334444444333333333
No 129
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=92.84 E-value=2.4 Score=45.78 Aligned_cols=129 Identities=11% Similarity=0.167 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcCCCCC-CCCCCccchhHHHHHHHHHHHHHHH
Q 041515 532 MTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFSIIPV-SPPAITTPFSSLFALGVVMSFATGL 609 (762)
Q Consensus 532 i~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~~~~~-~~~~~~~~~~~l~plgl~~~l~i~l 609 (762)
+.+...+|.+....-|-.+. .+ +.+=.+++++.-...+.++. ...-.+. ........+.-+...|++.++...+
T Consensus 152 val~la~sf~~Ygl~RK~~~---v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~l 227 (293)
T COG2962 152 VALALALSFGLYGLLRKKLK---VD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLL 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcC---Cc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHH
Confidence 33344444444444443332 23 44555556555554443331 1111110 0001223455566788888899999
Q ss_pred HHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 610 ANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 610 ~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
...|-+.+|.|+..++. +..|.. .+++.+++||.++..++.+-+.+-+|+++++.
T Consensus 228 f~~aa~~lpls~~G~lq-Yi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 228 FAAAAKRLPLSTLGFLQ-YIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 899987 56678888899999999988888888777654
No 130
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.70 E-value=26 Score=41.39 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 041515 284 FYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKL 363 (762)
Q Consensus 284 ~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L 363 (762)
.....|+..++.+...+..|..+|+.++.--.+...+.+. .... .-..+..+..++.++..+|....+....|
T Consensus 235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~----~~~~---~~~~l~s~~~ELe~ak~~L~~~k~E~~~L 307 (522)
T PF05701_consen 235 EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKE----KSSE---LQSSLASAKKELEEAKKELEKAKEEASSL 307 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhh----hhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666667777777777776622111110110 0011 11235556666666666666666666666
Q ss_pred HHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 041515 364 SADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKD 436 (762)
Q Consensus 364 ~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd 436 (762)
....+.+ -.-+.+.|.++.+....-......+.++.+.++++=.-++-.-=.+.+..
T Consensus 308 ~~~vesL----------------~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k 364 (522)
T PF05701_consen 308 RASVESL----------------RSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAK 364 (522)
T ss_pred HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh
Confidence 6665533 33567788888888888888888888888888887766655544444443
No 131
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.63 E-value=1.9 Score=52.62 Aligned_cols=75 Identities=13% Similarity=0.260 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHH---HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYI---ERIKEITKNSRKVDTDIERILKETRELQLESN 412 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt---~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein 412 (762)
++++.++.+++.+...++.-....++.+...++.. +..++.|. .-...|-..+++|-++|....++++.+.+.+|
T Consensus 639 ~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~-~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~ 716 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQLKKKLDYQQRQIESQK-SPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIVN 716 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35555565555555554443333333333344221 12223222 22234445567888888888888888888765
No 132
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.63 E-value=18 Score=43.08 Aligned_cols=126 Identities=14% Similarity=0.219 Sum_probs=79.9
Q ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 041515 283 EFYLEQLDE--QVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEY 360 (762)
Q Consensus 283 ~~n~~kL~~--~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~ 360 (762)
..-+.|++. +..++..+...+.++|++.-.....+..++=.. -+.... + -+....++.++.+.+.+..-++..
T Consensus 43 ~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~---ae~~~~-~-~rf~ka~~~i~~~~~~l~~~e~~i 117 (560)
T PF06160_consen 43 ADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFE---AEEYAD-K-YRFKKAKQAIKEIEEQLDEIEEDI 117 (560)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHh-c-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 677888899999999988775544443222211 100000 1 134455556666666666666666
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 361 SKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMI 429 (762)
Q Consensus 361 ~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~deli 429 (762)
..+..+++ ++++.=++++.+|..+...=++++|++........-++..+++.+
T Consensus 118 ~~i~~~l~----------------~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L 170 (560)
T PF06160_consen 118 KEILDELD----------------ELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQL 170 (560)
T ss_pred HHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHH
Confidence 66655544 677777888888888888888888888877777666666666554
No 133
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.58 E-value=15 Score=45.67 Aligned_cols=129 Identities=11% Similarity=0.114 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc-cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515 339 LREVELERQSVLSEIRKREDEYSKLSADLEKQPKV-ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417 (762)
Q Consensus 339 ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~-~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~ 417 (762)
||.+...+..-+.|+-.....+.+|+..|..+.-. .--+---.++-+.++|.++- .+.|+|+|..+...
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~E----------Na~LlkqI~~Lk~t 559 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEE----------NAHLLKQIQSLKTT 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHH
Confidence 44444444444444444444444444444432211 00000123555666666654 44566666666553
Q ss_pred HHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhccc-----cchhhhhhhHH
Q 041515 418 LHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKL-AAVASRS-----LNVDKLQADVD 481 (762)
Q Consensus 418 l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi-~~~~~k~-----~nle~i~~D~~ 481 (762)
.-.=+..|..+-. +|..-.++-+.|..-..++|+..+||.+| ++...-. .+.+.|..+..
T Consensus 560 -~qn~~~LEq~~n~---lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~ 625 (1195)
T KOG4643|consen 560 -SQNGALLEQNNND---LELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKES 625 (1195)
T ss_pred -hHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHH
Confidence 2222222222221 12222334445555558999999999998 4333311 66777877743
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.55 E-value=9.2 Score=42.12 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=64.8
Q ss_pred HHHHHHhhHHHHHHHH-HHHHHHhhchHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHH
Q 041515 304 ELQWDALKESLEEKKR-SLEESLYANELE---AQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSY 379 (762)
Q Consensus 304 ~~qWe~~r~pl~~~~~-~l~~~~~~~~~e---~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Y 379 (762)
++.|=+-|.-+.+... .|.+.+..-..+ -..++..+.++..++++--..++.+-...+++..++++-+ +.+
T Consensus 131 k~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d-----~~e 205 (312)
T smart00787 131 KKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD-----PTE 205 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC-----HHH
Confidence 4568777777765522 222211111111 1112333444444455555555555555555555555544 456
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 380 IERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 380 t~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
.+++. .-|++++.+|.....+..++|.+.+.+.++++
T Consensus 206 L~~lk---~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 206 LDRAK---EKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 67888999999999999999999999998887
No 135
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.54 E-value=23 Score=40.45 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhhcccCcHHHHHHHHHHHH
Q 041515 243 RDESLMEAVTAKTSELCDPEEEYQLLKAAAE 273 (762)
Q Consensus 243 ~~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e 273 (762)
..+.+.+++.+.+.++.+.|++++..++-..
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445556666666677777777777665433
No 136
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.46 E-value=3 Score=43.19 Aligned_cols=100 Identities=19% Similarity=0.379 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhhhhhH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhh-HH
Q 041515 378 SYIERIKEITKNSRKVD----TDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATD-RV 452 (762)
Q Consensus 378 ~Yt~RI~Eiv~nirKQ~----~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg-~~ 452 (762)
.|-+.|-++++--.+++ .+|.+++.|..++..++|++ +++|+ ---++++-++++++....+. ++
T Consensus 48 e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~----E~sfs-------dl~~ryek~K~vi~~~k~NEE~L 116 (207)
T PF05010_consen 48 EYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSL----EKSFS-------DLHKRYEKQKEVIEGYKKNEETL 116 (207)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHH----HhhHH-------HHHHHHHHHHHHHHHHHHhHHHH
Confidence 47788888887776664 46999999999999999875 45555 12245666888888886665 66
Q ss_pred HHHHHHHHHHHHHHhccc--------cchhhhhhhHHHHHHHhh
Q 041515 453 RREIAEYEKKLAAVASRS--------LNVDKLQADVDVIMKENE 488 (762)
Q Consensus 453 ~rei~~le~qi~~~~~k~--------~nle~i~~D~~~i~~en~ 488 (762)
+..+.|+++.+..+.++. ..|++-+..+..++....
T Consensus 117 kk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~ 160 (207)
T PF05010_consen 117 KKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQ 160 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 778889999999888865 456677777776666554
No 137
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.46 E-value=8.8 Score=43.64 Aligned_cols=124 Identities=18% Similarity=0.264 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~ 417 (762)
+++.++.++.+...+++...+...+|+++++++.+ .|-.|...++.=..|+.++-.++..+-+.+|.+.++
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~---------~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLET---------EIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666654433 344455555555566666666666666666666665
Q ss_pred HH---HHHHHHHHHHHhhcCccch----------------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc
Q 041515 418 LH---RTYAVVDDMIFREAKKDQS----------------------FEQVSEKILATDRVRREIAEYEKKLAAVASRS 470 (762)
Q Consensus 418 l~---Rtf~v~delif~~akkd~~----------------------~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~ 470 (762)
-. +..+.+-.-+|+..++.+- -..+.+.+........++.+.+..|+.+..+.
T Consensus 110 ~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l 187 (420)
T COG4942 110 EREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAEL 187 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 52 2334444555665444330 23456777777777777777777777766643
No 138
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.44 E-value=18 Score=38.81 Aligned_cols=162 Identities=12% Similarity=0.153 Sum_probs=86.7
Q ss_pred ccCcHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHH
Q 041515 258 LCDPEEEYQLLKAAAEMAFDD-SHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKL 336 (762)
Q Consensus 258 ~~e~e~~~~~~~~~~e~l~d~-~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~ 336 (762)
+.++=+++.....++..+.-. .+.-+..-+.|++.-+..+.++..|.+|-+...+.+.+...++.--..=...|+..|.
T Consensus 40 Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~ 119 (258)
T PF15397_consen 40 VRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKA 119 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 444555555666666655541 1112444456666666666677777777777776666665555554444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhcCCC-------ccCh-------HHHHH-------HHHHHHhhhhhhH
Q 041515 337 LKLREVELERQSVLSEIRKR-EDEYSKLSADLEKQPK-------VASR-------RSYIE-------RIKEITKNSRKVD 394 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k-~e~~~~L~~~~~~~~k-------~~~R-------~~Yt~-------RI~Eiv~nirKQ~ 394 (762)
-+|..+...++.+..+-+.- +++.+-.+.+++++.. .+.+ +.|.. --.-+-+-|.+++
T Consensus 120 vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r 199 (258)
T PF15397_consen 120 VQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR 199 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554443333221 1111111111111100 0111 11222 2234667778888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 395 TDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 395 ~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
++|.-.-.++..|+.|+..+.....
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888888888888877766
No 139
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.42 E-value=0.31 Score=45.55 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhh-HHHHHHHHHHHhcccccHHHHHHHHHHHHhhhee
Q 041515 593 FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAV-TPTIVLAEFILFSKTISYKKVLALAIVSVGVAVA 663 (762)
Q Consensus 593 ~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas-~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la 663 (762)
++.++|+.+=.++++.+ .+.|...++|...-+-++. ..++++.++++.++..++..+++++++++|+++.
T Consensus 42 ~~y~ipf~lNq~GSv~f-~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQSGSVLF-FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 44567777655555554 6778888888877776433 3345777766666778999999999999999875
No 140
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.42 E-value=3.2 Score=47.04 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHH-HHHHhhHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELEL-QWDALKESLEEKKRSLEE---SLYANELEAQAKLLKLREVELERQSVLSEIRKRED 358 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~-qWe~~r~pl~~~~~~l~~---~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e 358 (762)
.-+-.||+....--++.+.++.+ |||.+|.-+.+...+.++ +.++-+.+.+.--.+++++..+++....|+..-.|
T Consensus 324 ~ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 324 PLLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556788777777788888888 999999887666555444 44433333332233455555666666666665555
Q ss_pred HHHHHHH
Q 041515 359 EYSKLSA 365 (762)
Q Consensus 359 ~~~~L~~ 365 (762)
+-+.|.+
T Consensus 404 ~n~~l~k 410 (493)
T KOG0804|consen 404 ENKKLIK 410 (493)
T ss_pred HHHHHHh
Confidence 5555543
No 141
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.36 E-value=26 Score=46.64 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=37.6
Q ss_pred cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515 374 ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 374 ~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l 418 (762)
.-|..|..||.++.-++.+++.+...-.+|.|+++.+.+..-.-.
T Consensus 798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~ 842 (1822)
T KOG4674|consen 798 ATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENA 842 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 557779999999999999999999999999999988776654433
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.35 E-value=7.6 Score=47.52 Aligned_cols=78 Identities=10% Similarity=0.294 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 340 REVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
+.+++..+.+.+++..-.+.+++|.++++++-+..+ .+.-.+...=|+-++|..++-..++.++..++.+..+++
T Consensus 589 ~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~-----~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 589 KSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN-----SQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555544322110 001111111245667777777888888888888888887
Q ss_pred HHH
Q 041515 420 RTY 422 (762)
Q Consensus 420 Rtf 422 (762)
+.=
T Consensus 664 ~Q~ 666 (717)
T PF10168_consen 664 YQQ 666 (717)
T ss_pred HHH
Confidence 753
No 143
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.30 E-value=18 Score=44.78 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=22.2
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 385 EITKNSRKVDTDIERILKETRELQLESNSIQERLHRT 421 (762)
Q Consensus 385 Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rt 421 (762)
|=.+-||++=.+|...+.||+.....+..--..+++.
T Consensus 390 eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~ 426 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESE 426 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3355788888888888888876544443333333333
No 144
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.27 E-value=18 Score=47.82 Aligned_cols=20 Identities=15% Similarity=-0.021 Sum_probs=12.2
Q ss_pred ccCcHHHHHHHHHHHHHhcC
Q 041515 258 LCDPEEEYQLLKAAAEMAFD 277 (762)
Q Consensus 258 ~~e~e~~~~~~~~~~e~l~d 277 (762)
++.+++.++..+.+.+.+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~ 251 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRV 251 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55666777777766554433
No 145
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.07 E-value=26 Score=40.71 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhhhcccCcHHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhH
Q 041515 243 RDESLMEAVTAKTSELCDPEEEYQLLKAAAEM-AFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKE 312 (762)
Q Consensus 243 ~~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e~-l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~ 312 (762)
..+.+.+++.+.+.++.+.|++++..+..... +++......+.+..++....+.+.++..+..++...+.
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777777776643322 22222223455666666666666666666666665554
No 146
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.06 E-value=31 Score=40.89 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhhhhh
Q 041515 438 SFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLE 491 (762)
Q Consensus 438 ~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~~~~ 491 (762)
+|.||-......-+..-++.++++++.. ..||.+|++|-+-|.
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~~-----------~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLNS-----------RSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hccHHHHHHHHHHHH
Confidence 4566666555666666666666666542 378888888877653
No 147
>PRK09039 hypothetical protein; Validated
Probab=91.91 E-value=10 Score=42.27 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=57.5
Q ss_pred HHHHhhhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhH---HHHHHHHHHHHH
Q 041515 248 MEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKE---SLEEKKRSLEES 324 (762)
Q Consensus 248 ~~~~~~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~---pl~~~~~~l~~~ 324 (762)
.++++....++.+++.++..+-..+.+--......+.-+..|+...++.+.+...|..+-+.... |+......+.++
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~ 124 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence 46666666667777776666554444433333446777788888777777777777765543322 555555555555
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHH
Q 041515 325 LYANELEAQAKLLKLREVELERQSV 349 (762)
Q Consensus 325 ~~~~~~e~~~k~~~ik~~~~~~~~~ 349 (762)
+.....++.+..-++..+++++..+
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aL 149 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAAL 149 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5544444443333444444444333
No 148
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.89 E-value=34 Score=45.33 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 041515 267 LLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELER 346 (762)
Q Consensus 267 ~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~ 346 (762)
.++.+...|.+ .+.++.+++..++....++..|..|=++.+.-+... ++......+......+++++..+.
T Consensus 294 rk~eA~kkLe~----tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~-----ee~lr~q~ei~~l~~~LeELee~L 364 (1486)
T PRK04863 294 ELYTSRRQLAA----EQYRLVEMARELAELNEAESDLEQDYQAASDHLNLV-----QTALRQQEKIERYQADLEELEERL 364 (1486)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666777 788999999988888888888888877776543332 221111122222233445555555
Q ss_pred HHHHHHHHhhHHHHHHHHHHHh
Q 041515 347 QSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 347 ~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
++..+++...++.+..+..+++
T Consensus 365 ee~eeeLeeleeeleeleeEle 386 (1486)
T PRK04863 365 EEQNEVVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544443
No 149
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.89 E-value=45 Score=42.28 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 346 RQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRT 421 (762)
Q Consensus 346 ~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rt 421 (762)
|+++..+++.-.+++.+.+++.+...+ .-++-++|+-|+-+++.+-|-++.++-.|-++.+|.--+.++...+.
T Consensus 1586 i~~a~~~~~~a~~~l~kv~~~t~~aE~--~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a 1659 (1758)
T KOG0994|consen 1586 IQGADRDIRLAQQLLAKVQEETAAAEK--LATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSA 1659 (1758)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555443333 23457899999999999999999999999999888877777665544
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.63 E-value=2.5 Score=43.74 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 041515 280 HPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEES 324 (762)
Q Consensus 280 ~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~ 324 (762)
++.-.-+.+|+..+++.++++.++.++|......+.+++.++++.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSV 133 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334556667888888888899999999998888888877665554
No 151
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=91.41 E-value=2.8 Score=43.17 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHH-HHHHHHHHhcccccHHHHHHHHHHHHhhhe
Q 041515 599 LGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPT-IVLAEFILFSKTISYKKVLALAIVSVGVAV 662 (762)
Q Consensus 599 lgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~-~vll~~l~lgek~s~~~~lsLlli~~GV~l 662 (762)
+.+..++.-.+-++.++|.+..+..++-+ +-++ +++++++++|+.++...++++.++++|+.+
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~-~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTA-LSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34445555566788899998888888874 5665 478899999999999999999999999865
No 152
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.31 E-value=44 Score=41.71 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=19.4
Q ss_pred HHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 386 ITKNSRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 386 iv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
+-.-|.+-++|+.+|.---..|+++.+....++.
T Consensus 333 ~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~ 366 (1200)
T KOG0964|consen 333 VKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLA 366 (1200)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence 3334445556666666666666666666555554
No 153
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=1.5 Score=47.88 Aligned_cols=68 Identities=7% Similarity=0.070 Sum_probs=57.1
Q ss_pred HHHHH-HHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 598 ALGVV-MSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 598 plgl~-~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
.+|++ +.++-..+..|+.|.|.+..+-+-+.+.++.++++.++++|++++.-.+++++.++|..+...
T Consensus 68 w~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 68 WAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 35554 778888889999999999999998655666689999999999999999999999999776654
No 154
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.19 E-value=33 Score=42.83 Aligned_cols=106 Identities=11% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHh-----hHHHHHH
Q 041515 382 RIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILAT-----DRVRREI 456 (762)
Q Consensus 382 RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~t-----g~~~rei 456 (762)
++.++..+++-=++++.+--.+..+++++-+..+..+.++=--+++.= ..-..++.|...++..++. -.-.-.+
T Consensus 305 k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q-~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~ 383 (1072)
T KOG0979|consen 305 KVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQ-AELQETEDPENPVEEDQEIMKEVLQKKSSKL 383 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhcCCccccchhHHHHHHHHHHHHhhhh
Confidence 444555555555555555555666666666666555555543333321 1112233333322222111 1111223
Q ss_pred HHHHHHHHHHhccc---cchhhhhhhHHHHHHHhh
Q 041515 457 AEYEKKLAAVASRS---LNVDKLQADVDVIMKENE 488 (762)
Q Consensus 457 ~~le~qi~~~~~k~---~nle~i~~D~~~i~~en~ 488 (762)
++.-..|+.++.+. ..++.+..++....+.|.
T Consensus 384 ~~~~~~id~~~~~~~~~~~l~~~kr~~~~~~~~~~ 418 (1072)
T KOG0979|consen 384 RDSRQEIDAEQLKSQKLRDLENKKRKLKQNSDLNR 418 (1072)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444555544433 556666666665555554
No 155
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.89 E-value=54 Score=41.39 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=5.8
Q ss_pred hhhhhhhHHHHHHHh
Q 041515 473 VDKLQADVDVIMKEN 487 (762)
Q Consensus 473 le~i~~D~~~i~~en 487 (762)
++....++.+.+++.
T Consensus 721 l~~~~~~~~~~~~~~ 735 (908)
T COG0419 721 LESRKAELEELKKEL 735 (908)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 156
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.71 E-value=22 Score=37.42 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWDALKESL 314 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl 314 (762)
.+..|+........|+..|..+-...+...
T Consensus 79 ~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ 108 (237)
T PF00261_consen 79 ARKVLENREQSDEERIEELEQQLKEAKRRA 108 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555554444444444
No 157
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.54 E-value=52 Score=40.55 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
++.++..++.....+....+..+.+++..+++-
T Consensus 238 ~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~ 270 (754)
T TIGR01005 238 QLAELNTELSRARANRAAAEGTADSVKKALQNG 270 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556666666666666666666777777666543
No 158
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.52 E-value=63 Score=43.23 Aligned_cols=136 Identities=26% Similarity=0.265 Sum_probs=78.6
Q ss_pred HHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH---HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 291 EQVGAKKHNLVELELQWDALKESLEEKKRSLEES---LYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADL 367 (762)
Q Consensus 291 ~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~---~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~ 367 (762)
+..+.-++++.+|...|.+.|..+.++...+++- ......+++. .|..+...+..+..++..+...+.+|+.++
T Consensus 798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~---~i~~~~~~~~~~~~~l~~~~~~~~~le~k~ 874 (1822)
T KOG4674|consen 798 ATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQN---LVDELESELKSLLTSLDSVSTNIAKLEIKL 874 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556789999999999999998886665553 3333344443 445555566666666666666666555555
Q ss_pred hcCCCcc----ChH------HHHHHHHHHHhhhhhhHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 368 EKQPKVA----SRR------SYIERIKEITKNSRKVDTDI-------ERILKETRELQLESNSIQERLHRTYAVVDDMI 429 (762)
Q Consensus 368 ~~~~k~~----~R~------~Yt~RI~Eiv~nirKQ~~eI-------~Kil~dtr~lqkein~~~~~l~Rtf~v~deli 429 (762)
..+.+.+ .|. +|..+-.-...++|+-.+++ ..=+..++++|....+....|.+.=...|+.-
T Consensus 875 ~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 875 SELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554431 111 23333333344445444444 23355666677776667777776666666543
No 159
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.46 E-value=5.6 Score=43.77 Aligned_cols=50 Identities=28% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 318 KRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADL 367 (762)
Q Consensus 318 ~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~ 367 (762)
.+.+++++.....+...+..++.+++++++.+...|+...+...++..++
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444443333
No 160
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.36 E-value=23 Score=36.32 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH--HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHH
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS--YIERIKEITKNSRKVDTDIERILKETRELQLESNS 413 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~--Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~ 413 (762)
+.+-.++..++..+..+++.++..++.|...++-..+...|.. +.+++.+. -.++..++.|++.
T Consensus 117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~--------------~~~~~~l~~ei~~ 182 (194)
T PF15619_consen 117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEA--------------QEEVKSLQEEIQR 182 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 3344566777888888888888889999988887766555543 33333333 3445556666666
Q ss_pred HHHHH
Q 041515 414 IQERL 418 (762)
Q Consensus 414 ~~~~l 418 (762)
+..+|
T Consensus 183 L~~kl 187 (194)
T PF15619_consen 183 LNQKL 187 (194)
T ss_pred HHHHH
Confidence 65555
No 161
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.95 E-value=5 Score=44.36 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=37.1
Q ss_pred HHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC
Q 041515 308 DALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQP 371 (762)
Q Consensus 308 e~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~ 371 (762)
.+....|.++...|++....-+.. .-++++.+++++.+...++..+.+.+.+|+.+++.+.
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e~~~~---D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEEIESC---DQEELEALRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666555543321111 2246677777888888888888777777777776443
No 162
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.92 E-value=51 Score=39.56 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=43.5
Q ss_pred cCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515 276 FDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRK 355 (762)
Q Consensus 276 ~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~ 355 (762)
-|.+...++-|..|++.-+..+.+..+=...-.+.|+...+- ..|. ..+-+.|..+..+.+.+..-++.
T Consensus 445 ~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~-etl~----------~K~ge~i~~L~sE~~~lk~il~~ 513 (961)
T KOG4673|consen 445 KDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEA-ETLE----------EKKGELITKLQSEENKLKSILRD 513 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh-hHHH----------HHhhhHHHHHHHHHHHHHHHhhh
Confidence 334444677888887766666655544444333333322111 0111 11223555666666666666666
Q ss_pred hHHHHHHHHHHHhcCCCc
Q 041515 356 REDEYSKLSADLEKQPKV 373 (762)
Q Consensus 356 k~e~~~~L~~~~~~~~k~ 373 (762)
|++.-+++...++++.-.
T Consensus 514 Kee~Ek~~~E~I~k~~ae 531 (961)
T KOG4673|consen 514 KEETEKLLQETIEKHQAE 531 (961)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555555444444333
No 163
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.83 E-value=70 Score=40.96 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 041515 451 RVRREIAEYEKKLAAVASRS 470 (762)
Q Consensus 451 ~~~rei~~le~qi~~~~~k~ 470 (762)
....++++|+.+++++.++.
T Consensus 753 ~~~~~vl~Lq~~LEqe~~~r 772 (1317)
T KOG0612|consen 753 QLITEVLKLQSMLEQEISKR 772 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556777777777777765
No 164
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.54 E-value=43 Score=38.11 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 041515 284 FYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKL 363 (762)
Q Consensus 284 ~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L 363 (762)
+-+..-...+......+ ++.+|.++++..+.+++.+..+. ..+ ...++|++++.++++.+-+-..--.+..+
T Consensus 128 ~k~~~~~~~~~q~esll-e~~~q~da~~qq~~~ele~~d~~----~~~---d~ee~kqlEe~ieeL~qsl~kd~~~~~~l 199 (446)
T KOG4438|consen 128 EKMDLYRPFIQQLESLL-ELRKQLDAKYQQALKELERFDED----VEE---DEEEVKQLEENIEELNQSLLKDFNQQMSL 199 (446)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccc----ccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444433 66666666666666555544432 111 23567778888888888887778888889
Q ss_pred HHHHhcCCCccChHHHHHHHHHH
Q 041515 364 SADLEKQPKVASRRSYIERIKEI 386 (762)
Q Consensus 364 ~~~~~~~~k~~~R~~Yt~RI~Ei 386 (762)
..+|.++.+ .+++.|+++....
T Consensus 200 ~~e~n~~k~-s~~s~~~k~l~al 221 (446)
T KOG4438|consen 200 LAEYNKMKK-SSTSEKNKILNAL 221 (446)
T ss_pred HHHHHHHhH-hhHHHHHHHHHHH
Confidence 999999888 4588888876553
No 165
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.42 E-value=16 Score=44.55 Aligned_cols=103 Identities=20% Similarity=0.357 Sum_probs=64.3
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---hHH-HHHHHHHHhhHHHHHHHHHHHHH
Q 041515 388 KNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQ---SFE-QVSEKILATDRVRREIAEYEKKL 463 (762)
Q Consensus 388 ~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~---~~~-~l~~~i~~tg~~~rei~~le~qi 463 (762)
+--++|++.++|.|.+=|.=.++.. ++..|..+.. -+.+.+ .|. ..=++-.|.+++++|++..|+++
T Consensus 498 ~eE~~~R~~lEkQL~eErk~r~~ee---~~aar~~~~~------~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 498 AEERRQRASLEKQLQEERKARKEEE---EKAARALAQA------QATRQECAESCRQRRRQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH---Hhhhhccccc------hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999987775555533 2444443321 111112 343 22344466788888888888887
Q ss_pred HHHhccc-----------cchhhhhhhHHHHHHHhhhhhhhccCCCc
Q 041515 464 AAVASRS-----------LNVDKLQADVDVIMKENEFLEQQFHRDGR 499 (762)
Q Consensus 464 ~~~~~k~-----------~nle~i~~D~~~i~~en~~~~s~~g~~~~ 499 (762)
...++.. ...|-+..-+..|+..|.-||......+|
T Consensus 569 ~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 569 RELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 7666522 34667777777888888888777665444
No 166
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=89.40 E-value=21 Score=42.12 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETRE 406 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~ 406 (762)
++.-+...-+.+|..+.++|-.-|.+
T Consensus 122 e~~~e~~~~~~~~~~~le~~a~lt~~ 147 (514)
T TIGR03319 122 EKEEELEELIAEQREELERISGLTQE 147 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 44444445555555555555544443
No 167
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.32 E-value=56 Score=40.34 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=42.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 347 QSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 347 ~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R 420 (762)
+++.......+..|++++..|..+-.. -..-.+.--+|++...-+++.|.++-+...+|-..+..++...+|
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~--h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQE--HADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444566666666666544221 122445666788888888888886666555555555555555555
No 168
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.30 E-value=42 Score=37.68 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=2.7
Q ss_pred cChHHHH
Q 041515 374 ASRRSYI 380 (762)
Q Consensus 374 ~~R~~Yt 380 (762)
+++..|.
T Consensus 193 is~~~~~ 199 (423)
T TIGR01843 193 VSRLELL 199 (423)
T ss_pred CCHHHHH
Confidence 3344443
No 169
>PF13514 AAA_27: AAA domain
Probab=89.13 E-value=33 Score=44.30 Aligned_cols=104 Identities=22% Similarity=0.300 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhhc------hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcc---ChHHHHHHH
Q 041515 313 SLEEKKRSLEESLYAN------ELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVA---SRRSYIERI 383 (762)
Q Consensus 313 pl~~~~~~l~~~~~~~------~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~---~R~~Yt~RI 383 (762)
|+..+.+.++.++..- -.+ -..++..+..++.....++....+.+.++..+++.++-+. ....-+...
T Consensus 215 p~~~~~~~l~~~l~~l~~~~~~p~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L 291 (1111)
T PF13514_consen 215 PLLAELQQLEAELAELGEVPDFPED---GAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEAL 291 (1111)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHH
Confidence 6677778888776621 112 2346677788899999999999999999999999997763 344455666
Q ss_pred HHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 384 KEITKNSRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 384 ~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
.+--+.+++-..|+.+.-.+...++.++..+...|.
T Consensus 292 ~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 292 EEQRGEYRKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666666666666666666666666666665555
No 170
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.11 E-value=81 Score=40.69 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=8.1
Q ss_pred cHHHHHHHHHHHHHH
Q 041515 671 NIFGAIIAVAWIIPS 685 (762)
Q Consensus 671 s~~G~ilalls~l~~ 685 (762)
+.+|-++.++.+++.
T Consensus 629 ~~lgr~~~i~~~~~l 643 (1109)
T PRK10929 629 GTLGRLCFILLCGAL 643 (1109)
T ss_pred ccHHHHHHHHHHHHH
Confidence 456666555554443
No 171
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.00 E-value=5.5 Score=43.91 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 041515 339 LREVELERQSVLSEIR 354 (762)
Q Consensus 339 ik~~~~~~~~~~~e~~ 354 (762)
+++++.+-.++..|++
T Consensus 66 L~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 66 LEELEKEREELDQELE 81 (314)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 172
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.95 E-value=75 Score=40.15 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=34.3
Q ss_pred cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 374 ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDM 428 (762)
Q Consensus 374 ~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~del 428 (762)
..+..|.+.+...-.++.+=.+++.++-.+...++...+.....+++.+...+..
T Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 369 (908)
T COG0419 315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER 369 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666666655544
No 173
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=88.87 E-value=66 Score=39.36 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHH--HHHHHHHHHHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILK--ETRELQLESNSIQERLH 419 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~--dtr~lqkein~~~~~l~ 419 (762)
-+.||.+..---|-|..+|.|||. ++.+|..|+..+..++.
T Consensus 1067 emdeik~~~~edrakqkei~k~L~ehelenLrnEieklndkIk 1109 (1424)
T KOG4572|consen 1067 EMDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIK 1109 (1424)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888888999999999996 46788889888887764
No 174
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.85 E-value=37 Score=36.43 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=14.3
Q ss_pred hhhHHhHHHHHHHHHHHHHHHH
Q 041515 391 RKVDTDIERILKETRELQLESN 412 (762)
Q Consensus 391 rKQ~~eI~Kil~dtr~lqkein 412 (762)
.-=+++|.+.-.++.+|+.+..
T Consensus 203 ~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 203 DELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3345667777777777776665
No 175
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=88.21 E-value=3.2 Score=44.08 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHH-----HHHHHHHHhhhhcchhHHHHHHHhhhHHHH-
Q 041515 560 FLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVM-----SFATGLANTSLKHNSVGFYQMSKIAVTPTI- 633 (762)
Q Consensus 560 ~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~-----~l~i~l~N~SL~yvsVs~~qmlKsas~P~~- 633 (762)
.-+.+.+++++++...+.....-+. + .-..+++.++.. ++-..+..++|..+|-+.+.++-| ..|.+
T Consensus 178 ~g~a~gm~vAaviv~Pig~~~ag~~--l----~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlS-LePa~a 250 (292)
T COG5006 178 AGVAVGMLVAALIVLPIGAAQAGPA--L----FSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLS-LEPALA 250 (292)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcchh--h----cChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHH-hhHHHH
Confidence 3445666666666555432111110 1 111345554432 244567788999999999999985 79988
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 634 VLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 634 vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
++..++++||++|+.+|++++.++.+++-.+.
T Consensus 251 Al~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 251 ALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 77789999999999999999999988775443
No 176
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.02 E-value=19 Score=39.87 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 041515 316 EKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEK 369 (762)
Q Consensus 316 ~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~ 369 (762)
+++..++.++.....+...+-.++.+++.+++.+.++++..++...++..+++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444344455666666666666666666666666665553
No 177
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.88 E-value=15 Score=38.65 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041515 335 KLLKLREVELERQSVLSEI 353 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~ 353 (762)
.+++|+.|++++..++..|
T Consensus 51 h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 51 HVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 178
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.85 E-value=37 Score=35.25 Aligned_cols=55 Identities=15% Similarity=0.373 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHH
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERI 400 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Ki 400 (762)
.++++...+..-+++..|..-++..+|-+. |+.|--|+.+--+.+++=+.|+.+.
T Consensus 37 ~l~~i~~~leEa~ell~qMdlEvr~lp~~~-Rs~~~~KlR~yksdl~~l~~e~k~~ 91 (220)
T KOG1666|consen 37 LLSEIDSKLEEANELLDQMDLEVRELPPNF-RSSYLSKLREYKSDLKKLKRELKRT 91 (220)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCCchh-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666788899999999999988 9999999998877777666666443
No 179
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.78 E-value=19 Score=38.50 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV 373 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~ 373 (762)
+..++..++..++....+++.+.+...+++..++.....
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888888887777755443
No 180
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=87.74 E-value=9.4 Score=41.15 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHH----HHHHHHHHHHhhhe
Q 041515 595 SLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYK----KVLALAIVSVGVAV 662 (762)
Q Consensus 595 ~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~----~~lsLlli~~GV~l 662 (762)
+-+.-|++++....+..+|...+.++..-.+-. +.+++ .+...++|||+-+.+ ..++++++++|+++
T Consensus 197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ-~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQ-LGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHh-HHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 445578888888888888888888877666654 34554 788889999877665 34566666666654
No 181
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.53 E-value=54 Score=39.75 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCCccChHHHHHHHHH--HHhhhhhhHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041515 358 DEYSKLSADLEKQPKVASRRSYIERIKE--ITKNSRKVDTDIERI--LKETRELQLESNSIQERLHRTYAVVDDMIFREA 433 (762)
Q Consensus 358 e~~~~L~~~~~~~~k~~~R~~Yt~RI~E--iv~nirKQ~~eI~Ki--l~dtr~lqkein~~~~~l~Rtf~v~delif~~a 433 (762)
+..+++..+++++|++..- .-.++..+ .-.|-+.|-.+|.-+ ..=.+.|||.|+.....|.|.-.-+-..+ .++
T Consensus 729 krA~~~~~k~~si~~~~~t-~~~q~~~~a~f~q~a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m-~~~ 806 (1104)
T COG4913 729 KRAAMLSRKVHSIAKQGMT-GALQALGAAHFPQVAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRM-SDA 806 (1104)
T ss_pred HHHHHHHHHHhhhhhhhhh-HHHHHHHHhhhhhhChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHH
Confidence 3445566667777775322 22222221 122233333333222 33567888888888888888765554443 344
Q ss_pred Cc
Q 041515 434 KK 435 (762)
Q Consensus 434 kk 435 (762)
|+
T Consensus 807 k~ 808 (1104)
T COG4913 807 KK 808 (1104)
T ss_pred Hh
Confidence 44
No 182
>PF15556 Zwint: ZW10 interactor
Probab=87.37 E-value=32 Score=35.30 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=71.7
Q ss_pred HHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHhcC--
Q 041515 294 GAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYS-KLSADLEKQ-- 370 (762)
Q Consensus 294 ~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~-~L~~~~~~~-- 370 (762)
+.+.++..+-+.||.+.++ .|++.-+.+++.-.++--++++-++-+..+++..+.++.|++... +++..-+.-
T Consensus 55 dtsRqkai~aKeQWKeLKA----tYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwql 130 (252)
T PF15556_consen 55 DTSRQKAIEAKEQWKELKA----TYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQL 130 (252)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999987655 455555555544444444555555555566666666666655322 221111000
Q ss_pred CCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 371 PKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVV 425 (762)
Q Consensus 371 ~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~ 425 (762)
-+...-+...++.-|+-.--++-.++....-.+...|+-+--.-.+||.|+-+..
T Consensus 131 qQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfL 185 (252)
T PF15556_consen 131 QQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQTFL 185 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000112334444444444445556777777777777777777777777765543
No 183
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.37 E-value=66 Score=42.52 Aligned_cols=206 Identities=14% Similarity=0.114 Sum_probs=93.1
Q ss_pred HHHhhhhhcccCcHHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515 249 EAVTAKTSELCDPEEEYQLLKAAAEMAFD--DSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLY 326 (762)
Q Consensus 249 ~~~~~~~~~~~e~e~~~~~~~~~~e~l~d--~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~ 326 (762)
.++.....++.++++....+....+-+|+ ++.++..-++.-...++...+++.....+.+..+..+.+..+++.+...
T Consensus 756 ~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa 835 (1353)
T TIGR02680 756 DELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAA 835 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444445555555555555556666 3444555555555666666666666666666666666666666665544
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515 327 ANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRE 406 (762)
Q Consensus 327 ~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~ 406 (762)
.....+. .+.+..++..+......+..-...+.+|....+..+. --+++-+.-..+.-++++......+...
T Consensus 836 ~l~L~a~--~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~------a~~~le~ae~~l~~~~~e~~~~~~e~~~ 907 (1353)
T TIGR02680 836 DLDLPTD--PDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAE------QRARAARAESDAREAAEDAAEARAEAEE 907 (1353)
T ss_pred cCCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2110000 0112222223322222222222233333222221111 1233334444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 041515 407 LQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVAS 468 (762)
Q Consensus 407 lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~ 468 (762)
++.+++.+...+.-.. ++ |.+.- +..-.++-+.-.+.|...++..+++.++.....
T Consensus 908 a~~~l~~l~e~l~~~~---ee-l~a~L--~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~ 963 (1353)
T TIGR02680 908 ASLRLRTLEESVGAMV---DE-IRARL--AETRAALASGGRELPRLAEALATAEEARGRAEE 963 (1353)
T ss_pred HHHHHHHHHHHHHHHH---HH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554321 11 11100 111233344444555555555555555554444
No 184
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=87.19 E-value=3.4 Score=44.00 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515 376 RRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 376 R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l 418 (762)
|..|=+|..|+=+.+++|+++|.+...|+..||++--.+=+|+
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567789999999999999999999999999999887777665
No 185
>COG2510 Predicted membrane protein [Function unknown]
Probab=87.06 E-value=4.7 Score=38.61 Aligned_cols=84 Identities=17% Similarity=-0.055 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHHHHHHHHHHHHHHHH
Q 041515 675 AIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLLQ 754 (762)
Q Consensus 675 ~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~~~i~lsgvlgf~ln 754 (762)
.+|++++.+++|+..++.|.-++ ++||.--.+--+.+..++++......+.+.... .-+...|.++++||+.+-+--
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~-~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGG-EIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceeccc-ccCcceehhhhHHHHHHHHHH
Confidence 58999999999999999876654 477776666667777777766666655543211 124456788888997665555
Q ss_pred HHHHhhc
Q 041515 755 WSGALAL 761 (762)
Q Consensus 755 ~s~fl~I 761 (762)
+..|++|
T Consensus 82 l~Yf~AL 88 (140)
T COG2510 82 LLYFRAL 88 (140)
T ss_pred HHHHHHH
Confidence 5555543
No 186
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.63 E-value=30 Score=34.82 Aligned_cols=7 Identities=43% Similarity=0.510 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 041515 299 NLVELEL 305 (762)
Q Consensus 299 ~l~~L~~ 305 (762)
++.++..
T Consensus 103 ~~~~~~~ 109 (191)
T PF04156_consen 103 RIQELES 109 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 187
>PRK12704 phosphodiesterase; Provisional
Probab=86.47 E-value=39 Score=39.93 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=5.0
Q ss_pred HHHHHhhHHHHHH
Q 041515 305 LQWDALKESLEEK 317 (762)
Q Consensus 305 ~qWe~~r~pl~~~ 317 (762)
.++.+.|..+..+
T Consensus 64 eE~~~~R~Ele~e 76 (520)
T PRK12704 64 EEIHKLRNEFEKE 76 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334333333
No 188
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.32 E-value=62 Score=38.57 Aligned_cols=26 Identities=8% Similarity=-0.060 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhcCC
Q 041515 346 RQSVLSEIRKREDEYSKLSADLEKQP 371 (762)
Q Consensus 346 ~~~~~~e~~~k~e~~~~L~~~~~~~~ 371 (762)
++.-...+...++..+.+..-++.+.
T Consensus 214 L~~e~~~L~n~e~i~~~~~~~~~~L~ 239 (563)
T TIGR00634 214 LEAEQQRLSNLEKLRELSQNALAALR 239 (563)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 33334445555555555555555553
No 189
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=86.15 E-value=6.4 Score=41.01 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHH-HHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELEL-QWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYS 361 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~-qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~ 361 (762)
.+++++++.+-++--+|++.--- .--.|-........++|.....+..|.+ ++.++.+++++- -.+.+.+.
T Consensus 74 ae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEik-q~~~Leklr~k~-------psdr~~is 145 (219)
T PF06730_consen 74 AECLAKVQDYRQAEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIK-QLKQLEKLRQKN-------PSDRQIIS 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccC-------Cccchhhh
Confidence 45666776666665555543211 1122222223333445555555555544 223333333321 12244566
Q ss_pred HHHHHHhcCCCccChHHHHHHHHHHHhhhhhhH-HhHHHHHHHH
Q 041515 362 KLSADLEKQPKVASRRSYIERIKEITKNSRKVD-TDIERILKET 404 (762)
Q Consensus 362 ~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~-~eI~Kil~dt 404 (762)
+-+.++.+..-+++|+ |+-+-|.+.+-.||| .||.+|+.|-
T Consensus 146 qae~el~kas~~~~rt--~~~Lee~i~~FEkqKl~DlK~i~sdF 187 (219)
T PF06730_consen 146 QAESELQKASVDATRT--TKQLEETIDNFEKQKLKDLKKIFSDF 187 (219)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777676 677889999999998 6788888875
No 190
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.06 E-value=8.8 Score=39.17 Aligned_cols=103 Identities=23% Similarity=0.331 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh----HH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKR----ED 358 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k----~e 358 (762)
.....+++..++...+++..+..+++..+..+.+......+. .|-...+.++++++.+.+++..++... -+
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 344455666555555566666555555555554442222211 232335566666666666666555522 23
Q ss_pred HHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhh
Q 041515 359 EYSKLSADLEKQPKVASRRSYIERIKEITKNSRK 392 (762)
Q Consensus 359 ~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirK 392 (762)
.++++..+....-..+|| ||+=|.-|..-++|
T Consensus 136 ~i~~~~~~~~~~~~~anr--wTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 136 KIEKLKEEIKIAKEAANR--WTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 344444444333222221 55555555555544
No 191
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.92 E-value=5.8 Score=45.57 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515 357 EDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 357 ~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l 418 (762)
|++-+||..-+..+..-..=+.|+.-++|+.++.+-|..--.+...|=+.++...+.++...
T Consensus 414 E~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~ 475 (508)
T KOG3091|consen 414 EELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQ 475 (508)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHH
Confidence 44444555444444433444568888888888887777666667777777766666666655
No 192
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=85.84 E-value=96 Score=38.03 Aligned_cols=107 Identities=9% Similarity=0.109 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 041515 262 EEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLRE 341 (762)
Q Consensus 262 e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~ 341 (762)
-++-+.+++-+-+++|+++.-+..|..||-.+...+.....| .+.+..+.+.+++.+.++-+...+.-...+++-.
T Consensus 84 tqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~l----Q~ti~~~q~d~ke~etelE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 84 TQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKL----QDTIQGAQDDKKENEIEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 444455666667777755555555555555444333333333 3455555555565555544433333322333333
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 342 VELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 342 ~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
-+.++..+-++++.|-+.+..+..+|...-.
T Consensus 160 k~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~ 190 (1265)
T KOG0976|consen 160 KAHDIFMIGEDLHDKNEELNEFNMEFQTKLA 190 (1265)
T ss_pred hhHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Confidence 3456777777777776666666555554433
No 193
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=85.58 E-value=12 Score=37.25 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=63.8
Q ss_pred hcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHH
Q 041515 256 SELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAK 335 (762)
Q Consensus 256 ~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k 335 (762)
+++.+.+.++..++...+-|.. --..-+..-..+..++..+..+|+..+..|.....+|++...
T Consensus 43 ~~n~~~~~e~~~L~~d~e~L~~-------q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r--------- 106 (158)
T PF09744_consen 43 SRNQEHEVELELLREDNEQLET-------QYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENR--------- 106 (158)
T ss_pred HhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3445555555555555554444 112233344566778899999999999999888888876532
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhH
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDI 397 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI 397 (762)
.+..+.+........-++...+|..++..+.. .|+.=+...+.-|.||+.+|
T Consensus 107 -----~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~e-----r~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 107 -----QLELKLKNLSDQSSRLEEREAELKKEYNRLHE-----RERELLRKLKEHVERQKDEI 158 (158)
T ss_pred -----HHHHHhhhhhhhccccchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcC
Confidence 12222232223232334444445555543322 35555555566666666554
No 194
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.47 E-value=24 Score=43.51 Aligned_cols=158 Identities=22% Similarity=0.203 Sum_probs=92.9
Q ss_pred cccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH-HhhchHHHHHH
Q 041515 257 ELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEES-LYANELEAQAK 335 (762)
Q Consensus 257 ~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~-~~~~~~e~~~k 335 (762)
...+++++++..+...+-+...+......++.++..+..+++++.+|+.|-+..+.--..-..+++.. -.....+++-+
T Consensus 590 ~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 590 EKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34555666666665544444444446778888888888888888888887775443332222222211 00111222211
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515 336 --LLKLREVELERQSVLSEIRKREDE-------YSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRE 406 (762)
Q Consensus 336 --~~~ik~~~~~~~~~~~e~~~k~e~-------~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~ 406 (762)
-.+++.++.++..+..|++..... ...|+.++++..++.+ ..... -.+.--||+-||..--.=-.+
T Consensus 670 ~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~-~~~~~----~~~~k~kqe~EiaaAA~KLAE 744 (769)
T PF05911_consen 670 DLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEES-LQQLA----NEDKKIKQEKEIAAAAEKLAE 744 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc-hhhcc----ccccccchHHHHHHHHHHHHH
Confidence 235677788888888888766433 4456666666655432 11111 223334677788888887888
Q ss_pred HHHHHHHHHHHHH
Q 041515 407 LQLESNSIQERLH 419 (762)
Q Consensus 407 lqkein~~~~~l~ 419 (762)
=|+.|-+++-+|.
T Consensus 745 CQeTI~sLGkQLk 757 (769)
T PF05911_consen 745 CQETIASLGKQLK 757 (769)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887775
No 195
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=85.35 E-value=33 Score=35.93 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhh-----HHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 041515 340 REVELERQSVLSEIRKR-----EDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSI 414 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k-----~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~ 414 (762)
+++..++++...+.+.+ .+-...|+.++++...+..+.. +-.+|.|+++|..++++|+|..-++-+.-
T Consensus 74 ~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~-------~~~ei~k~r~e~~~ml~evK~~~E~y~k~ 146 (230)
T PF03904_consen 74 KEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNI-------AQNEIKKVREENKSMLQEVKQSHEKYQKR 146 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444 4445558888888877643333 66789999999999999988865555544
Q ss_pred HHHHHHHH
Q 041515 415 QERLHRTY 422 (762)
Q Consensus 415 ~~~l~Rtf 422 (762)
...+-..|
T Consensus 147 ~k~~~~gi 154 (230)
T PF03904_consen 147 QKSMYKGI 154 (230)
T ss_pred HHHHHHhH
Confidence 44443333
No 196
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.31 E-value=56 Score=35.65 Aligned_cols=28 Identities=4% Similarity=-0.084 Sum_probs=16.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 524 KICGPVVAMTFNFVVSVGIILTNKLVMG 551 (762)
Q Consensus 524 ~~~~~~~ai~~~~v~Sv~ii~~NK~vl~ 551 (762)
+++.+..|..+-.+......++..|++.
T Consensus 101 ~i~~tF~~ssIlLl~~Siss~iG~YiLa 128 (299)
T PF05884_consen 101 SIVETFSWSSILLLGFSISSFIGGYILA 128 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555567777765
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.30 E-value=58 Score=40.09 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhhhcccCcHHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515 244 DESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFD-DSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESL 314 (762)
Q Consensus 244 ~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e~l~d-~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl 314 (762)
.+.+.+++.+.+.++++-|.+++..++...++.. ...-.+..+..|+..+.....++...+.+++..+.-+
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666667777777777777765443322 1111235566666666666555555555555544433
No 198
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.27 E-value=24 Score=34.79 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=62.9
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CccchhHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 041515 545 TNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPA--ITTPFSSLFALGVVMSFATGLANTSLKHNSVGFY 622 (762)
Q Consensus 545 ~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~--~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~ 622 (762)
+|-.+-.. -..|+.-+++-++++++++.+.... ....+++. .+.||..++ -|++-+..+..+.....-+.....
T Consensus 23 iN~qL~~~--~~spl~As~isf~vGt~~L~~l~l~-~~~~~~~a~~~~~pwW~~~-GG~lGa~~vt~s~~l~p~lGa~~t 98 (150)
T COG3238 23 INGRLARY--LGSPLLASLISFLVGTVLLLILLLI-KQGHPGLAAVASAPWWAWI-GGLLGAIFVTSSILLAPRLGAATT 98 (150)
T ss_pred HHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhccCCchHHHH-ccchhhhhhhhhHHhccchhHHHH
Confidence 45554443 3459999999999988777665433 12222221 334554333 232222333333333344444444
Q ss_pred HHHHhhhHHHH-HHHHHH-Hhc---ccccHHHHHHHHHHHHhhhee
Q 041515 623 QMSKIAVTPTI-VLAEFI-LFS---KTISYKKVLALAIVSVGVAVA 663 (762)
Q Consensus 623 qmlKsas~P~~-vll~~l-~lg---ek~s~~~~lsLlli~~GV~la 663 (762)
+++--+.--+. ++++.+ ++| +.+++.++++++++++|+.++
T Consensus 99 ~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 99 IALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 44432222233 455544 444 678999999999999996654
No 199
>PRK00106 hypothetical protein; Provisional
Probab=85.27 E-value=56 Score=38.73 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 041515 562 TVIHYAVAWILLAIF 576 (762)
Q Consensus 562 t~~q~l~a~ill~i~ 576 (762)
++-|.+.++.++..+
T Consensus 351 l~~HSv~VA~lA~~l 365 (535)
T PRK00106 351 VLRHSVEVGKLAGIL 365 (535)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666555555443
No 200
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.96 E-value=79 Score=36.29 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH-HHH--------------HHHHHHhhhhhhHHhHHHHH
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS-YIE--------------RIKEITKNSRKVDTDIERIL 401 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~-Yt~--------------RI~Eiv~nirKQ~~eI~Kil 401 (762)
.+|+++-.-++...++|.+=-+.-.+|+++..+.....+|+. ||+ +-++....|+-==.+|.-.+
T Consensus 389 qrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i 468 (521)
T KOG1937|consen 389 QRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMI 468 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666667777777766677765 443 33333333443344555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 041515 402 KETRELQLESNSIQER 417 (762)
Q Consensus 402 ~dtr~lqkein~~~~~ 417 (762)
.||-.+.+|+--+..+
T Consensus 469 ~~tg~~~revrdlE~q 484 (521)
T KOG1937|consen 469 RETGALKREVRDLESQ 484 (521)
T ss_pred HHcchHHHHHHHHHHH
Confidence 5555555444444433
No 201
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=84.92 E-value=27 Score=38.33 Aligned_cols=121 Identities=15% Similarity=0.240 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAV 424 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v 424 (762)
+.++..++...--.-..++..+++.|+- .++-.+|.|.++.|...-.++.+++++++.++..+.. |..
T Consensus 42 ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~-----------~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~-y~~ 109 (301)
T PF06120_consen 42 NAEQARQEAIEFADSLDELKEKLKEMSS-----------TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN-YQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3444444444444555556666666543 3455666666666666666666677777766666652 221
Q ss_pred HHHHHHhhcCccc------hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHH
Q 041515 425 VDDMIFREAKKDQ------SFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVD 481 (762)
Q Consensus 425 ~delif~~akkd~------~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~ 481 (762)
...+-...+ +++.+-+..++.-...+++...+.+++...+|..+..+..+|..
T Consensus 110 ----~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~ 168 (301)
T PF06120_consen 110 ----QLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLT 168 (301)
T ss_pred ----HHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111211111 23344445555555666666666666666665555555555543
No 202
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.71 E-value=1.1e+02 Score=37.87 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041515 355 KREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAK 434 (762)
Q Consensus 355 ~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~ak 434 (762)
+.+++..+|...++.+.....| ....--++-+.+++=+.|...-+.+...+|..+.+.. .+.=+-.-++-=....
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~--~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~---qs~~~~~~~l~~~l~~ 537 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGR--AETKTESQAKALESLRQELALLLIELEELQRTLSNLA---QSHNNQLAQLEDLLKQ 537 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHh
Confidence 4455555555555554432222 2233345556666667777777777777777733322 2222333333333455
Q ss_pred ccchHHHHHHHHHHh
Q 041515 435 KDQSFEQVSEKILAT 449 (762)
Q Consensus 435 kd~~~~~l~~~i~~t 449 (762)
||.-+..+....++.
T Consensus 538 KD~~~~~~~~~~~e~ 552 (980)
T KOG0980|consen 538 KDRLAAELVAREEER 552 (980)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666555555444333
No 203
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.37 E-value=12 Score=37.69 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhh
Q 041515 286 LEQLDEQVGAKKHNLVELELQWDALK 311 (762)
Q Consensus 286 ~~kL~~~~~~~~~~l~~L~~qWe~~r 311 (762)
+.+++..+......+..+...|...+
T Consensus 97 l~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 97 LDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444444445555555554444
No 204
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=84.11 E-value=56 Score=37.62 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=11.5
Q ss_pred cchhhhhhhHHHHHHHhh
Q 041515 471 LNVDKLQADVDVIMKENE 488 (762)
Q Consensus 471 ~nle~i~~D~~~i~~en~ 488 (762)
..||+...||+-..++..
T Consensus 410 ~slek~~~~~~sl~~~i~ 427 (622)
T COG5185 410 KSLEKTLRQYDSLIQNIT 427 (622)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456667777776666554
No 205
>PRK12705 hypothetical protein; Provisional
Probab=83.90 E-value=59 Score=38.33 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515 300 LVELELQWDALKESLEEKKRSLEESLY 326 (762)
Q Consensus 300 l~~L~~qWe~~r~pl~~~~~~l~~~~~ 326 (762)
+.+-..++.++|....+++++.+.++.
T Consensus 54 ~~~~~~~~~~~~~~~e~e~~~~~~~~~ 80 (508)
T PRK12705 54 LLEAKELLLRERNQQRQEARREREELQ 80 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544433
No 206
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.68 E-value=27 Score=38.75 Aligned_cols=93 Identities=22% Similarity=0.309 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchHHHH--------HHHHHHhhHHHHHHHHHHHHHHHHhccc----cchhhhhh
Q 041515 411 SNSIQERLHRTYAVVDDMIFREAKKDQSFEQV--------SEKILATDRVRREIAEYEKKLAAVASRS----LNVDKLQA 478 (762)
Q Consensus 411 in~~~~~l~Rtf~v~delif~~akkd~~~~~l--------~~~i~~tg~~~rei~~le~qi~~~~~k~----~nle~i~~ 478 (762)
.++-....-|.-+.-.+++|+.|.+..-.-+| +++.+-+..+-.|.|+||+..+....+. -....+..
T Consensus 108 sdsaaaaaarid~~ee~l~~~~aq~erlvgeiaenerqhavemaelsekia~emr~lede~~r~~mrtkaaavatkpled 187 (637)
T KOG4421|consen 108 SDSAAAAAARIDAAEEALIFEEAQKERLVGEIAENERQHAVEMAELSEKIADEMRDLEDETERIAMRTKAAAVATKPLED 187 (637)
T ss_pred CCcccccccccchHHHHHHHHHHHhhHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchh
Confidence 34556667788888899999999997754433 6778889999999999999999888866 22334444
Q ss_pred hHHHHHHHhhhhhhhccCCCchhHH
Q 041515 479 DVDVIMKENEFLEQQFHRDGRALEE 503 (762)
Q Consensus 479 D~~~i~~en~~~~s~~g~~~~~~~~ 503 (762)
.+.+|.+....+-.|.++-.-+.++
T Consensus 188 elekieekkeeli~~~peppesqee 212 (637)
T KOG4421|consen 188 ELEKIEEKKEELIGDQPEPPESQEE 212 (637)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHH
Confidence 5556666555444444433333333
No 207
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.56 E-value=34 Score=38.49 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=55.3
Q ss_pred ChhHHHHHHhhhhhhhcCCCC--C--CCCC-ChhHHHHHHhhHHHHHHHHhcCCCCCCcccccccCChHHHHHHHHHHHH
Q 041515 70 TSETLVSICGQSLNLIFNTMT--F--GTSL-PHSMAEKFKICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVE 144 (762)
Q Consensus 70 tte~~v~~~~~cl~~I~p~~~--l--~~~l-P~~msaRfr~~~~lA~a~k~~Gy~~digy~tfLY~~~~dlr~l~~fLie 144 (762)
+-|+++-++.-|-|+|. ..| + |.-+ .|+ .+++.|-.+|+++|.+-|.+=+.+==|..+.+=.++-.|..
T Consensus 38 p~eQF~~F~~L~~WL~~-~~g~~f~~p~e~DDPn-----~~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad 111 (359)
T PF10498_consen 38 PGEQFYYFTSLCAWLIS-KAGRKFEQPQEYDDPN-----ATISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLAD 111 (359)
T ss_pred chHHHHHHHHHHHHHHH-hcCCCCCCCcccCCHH-----HHHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHH
Confidence 56899999999999998 333 2 2222 234 35789999999999999999898988999988888888876
Q ss_pred H
Q 041515 145 R 145 (762)
Q Consensus 145 k 145 (762)
+
T Consensus 112 ~ 112 (359)
T PF10498_consen 112 E 112 (359)
T ss_pred H
Confidence 4
No 208
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=83.56 E-value=18 Score=35.62 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhcCCCccChHH----------H-----HHHHHHHHhhhhhhHHhH
Q 041515 334 AKLLKLREVELERQSVLSEIRKREDE-YSKLSADLEKQPKVASRRS----------Y-----IERIKEITKNSRKVDTDI 397 (762)
Q Consensus 334 ~k~~~ik~~~~~~~~~~~e~~~k~e~-~~~L~~~~~~~~k~~~R~~----------Y-----t~RI~Eiv~nirKQ~~eI 397 (762)
+.-..|++++..++....+.+...+. +.-|...-........... + =.-|..++++++ ..+
T Consensus 59 ~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~---~hl 135 (160)
T PF13094_consen 59 RDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPELPQKSLLEASESRFAPTLCDEELLPLLKQLN---KHL 135 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccccccccccccccccccccCcccchHHHHHHHHHHH---HHH
Confidence 33456677777777777777666555 3333332222222211211 1 223444444444 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 398 ERILKETRELQLESNSIQERLHRTYAVVD 426 (762)
Q Consensus 398 ~Kil~dtr~lqkein~~~~~l~Rtf~v~d 426 (762)
+.|...+ .++..+...++|+++.+|
T Consensus 136 ~s~~~n~----~~l~~~~~~ie~~~~~Ld 160 (160)
T PF13094_consen 136 ESMQNNL----QQLKGLLEAIERSYAALD 160 (160)
T ss_pred HHHHccH----HHHHHHHHHHHHHHHhcC
Confidence 3333333 336677788888887654
No 209
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.50 E-value=15 Score=45.64 Aligned_cols=14 Identities=21% Similarity=-0.021 Sum_probs=7.6
Q ss_pred CCCCcccceeeccc
Q 041515 5 PPSKRWRLTWFPLH 18 (762)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (762)
|+++|.-..+.|+.
T Consensus 25 ~~Gk~~l~~l~P~~ 38 (782)
T PRK00409 25 ELGKEKVLQLDPET 38 (782)
T ss_pred HHHHHHHHcCCCCC
Confidence 44555555566654
No 210
>PRK09343 prefoldin subunit beta; Provisional
Probab=83.44 E-value=35 Score=32.32 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHhcCCCccC------hHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 041515 333 QAKLLKLREVELERQSVLSEIRKREDEYSK---LSADLEKQPKVAS------RRSYIERIKEITKNSRKVDTDIERILKE 403 (762)
Q Consensus 333 ~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~---L~~~~~~~~k~~~------R~~Yt~RI~Eiv~nirKQ~~eI~Kil~d 403 (762)
+..+.+++.++++++.+....+..+..+.. -..+++.+|.|.. |-..-.=.-|+++|+.|..+-|. .+
T Consensus 10 q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie---~~ 86 (121)
T PRK09343 10 QAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE---LR 86 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH---HH
Confidence 334555666666666666666655555444 4556777776532 11122233467777777777666 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041515 404 TRELQLESNSIQERLHRTYAVVDDMIFREAK 434 (762)
Q Consensus 404 tr~lqkein~~~~~l~Rtf~v~delif~~ak 434 (762)
++.+.|+...+..++...-.-+.+++=...+
T Consensus 87 ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 87 SRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8889999999988888888877777765554
No 211
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=83.35 E-value=1.9 Score=39.12 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 041515 683 IPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPG 729 (762)
Q Consensus 683 l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~ 729 (762)
++||.+.++.++..++ +++....++...++.+ ++++.++.+..+
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 44 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP 44 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc
Confidence 4678889998888764 9999999999999988 766666665543
No 212
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.64 E-value=18 Score=38.39 Aligned_cols=46 Identities=22% Similarity=0.138 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYAN 328 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~ 328 (762)
-..+.+......+..++..+...+|.+-+..|.++|+.++.+...-
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777788899999999999999999999999876544
No 213
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=82.42 E-value=88 Score=34.85 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCccchHHHHHHHHHHhhHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIF--REAKKDQSFEQVSEKILATDRVRREI 456 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif--~~akkd~~~~~l~~~i~~tg~~~rei 456 (762)
..+.+++=+..|++++..+...|.+... -..+..++-......+. +| .--|.|+....|-+.+.....+..+|
T Consensus 196 ~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~----~DDI~~~ll~~~~~~e~-lF~~eL~kf~~~~~~v~~~~~~Q~~ll~~i 270 (339)
T cd09238 196 TLRSNLEELEALGNERAGIEDMMKALKR----NDNILAKVMATTGSYDA-LFKEELKKYDSVREAVSKNISSQDDLLSRL 270 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCcHHHHHHhhhhhHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888898888888877555 23445555555434344 45 33456888999999999999999999
Q ss_pred HHHHHHHHH
Q 041515 457 AEYEKKLAA 465 (762)
Q Consensus 457 ~~le~qi~~ 465 (762)
++...+...
T Consensus 271 ~~~n~~f~~ 279 (339)
T cd09238 271 RALNEKFSQ 279 (339)
T ss_pred HHHHHHHHH
Confidence 988877654
No 214
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.37 E-value=1.2e+02 Score=36.24 Aligned_cols=168 Identities=17% Similarity=0.097 Sum_probs=97.6
Q ss_pred HHHhhhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 041515 249 EAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYAN 328 (762)
Q Consensus 249 ~~~~~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~ 328 (762)
+++...+.+..|..++...++-.++.+.. .+|.+.--+.|+......+ +..+|...|.....-|..+-.. ......
T Consensus 171 ~~l~~~~~~~~e~~~~~d~L~fq~~Ele~-~~l~~gE~e~L~~e~~rLs-n~ekl~~~~~~a~~~L~ge~~~--~~~~~~ 246 (557)
T COG0497 171 RELEDLQEKERERAQRADLLQFQLEELEE-LNLQPGEDEELEEERKRLS-NSEKLAEAIQNALELLSGEDDT--VSALSL 246 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhCCCCc--hhHHHH
Confidence 44444444555566666666655665555 2222333445544333322 3455666665555555421000 001111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhcCCCccChHHHH-HHHHHHHhhhhhhHHhHHHHHHH
Q 041515 329 ELEAQAKLLKLREVELERQSVLSEIR----KREDEYSKLSADLEKQPKVASRRSYI-ERIKEITKNSRKVDTDIERILKE 403 (762)
Q Consensus 329 ~~e~~~k~~~ik~~~~~~~~~~~e~~----~k~e~~~~L~~~~~~~~k~~~R~~Yt-~RI~Eiv~nirKQ~~eI~Kil~d 403 (762)
...+...+..+.++..+.+.+.+.+. .-++...+|...++.++-|.+|=.++ .|+..+-.-.||=...++-++.-
T Consensus 247 l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~ 326 (557)
T COG0497 247 LGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEY 326 (557)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 12222333334444444444433333 23566777888888999998888855 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041515 404 TRELQLESNSIQERLHR 420 (762)
Q Consensus 404 tr~lqkein~~~~~l~R 420 (762)
...++.|++.+.+.-+.
T Consensus 327 ~~~~~~el~~L~~~~~~ 343 (557)
T COG0497 327 LDKIKEELAQLDNSEES 343 (557)
T ss_pred HHHHHHHHHHhhhhhhH
Confidence 99999888887765443
No 215
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.33 E-value=1.2e+02 Score=36.61 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDAL 310 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~ 310 (762)
+.|..+|++......+|+.+|..+-...
T Consensus 14 d~ya~~lk~e~a~~qqr~~qmseev~~L 41 (617)
T PF15070_consen 14 DQYAQQLKEESAQWQQRMQQMSEEVRTL 41 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444333
No 216
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.31 E-value=18 Score=38.94 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=31.0
Q ss_pred hcCCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515 115 NLGYIGDISYYKFLYPSEEDLYKLIRFLVERL 146 (762)
Q Consensus 115 ~~Gy~~digy~tfLY~~~~dlr~l~~fLiekL 146 (762)
.|||+.-|+-.+|==||=.=+-.++.||+.+.
T Consensus 2 ~LGypr~iSmenFrtPNF~LVAeiL~WLv~ry 33 (267)
T PF10234_consen 2 ALGYPRLISMENFRTPNFELVAEILRWLVKRY 33 (267)
T ss_pred CCCCCCCCcHHHcCCCChHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999
No 217
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.83 E-value=16 Score=41.14 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=56.5
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 041515 271 AAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVL 350 (762)
Q Consensus 271 ~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~ 350 (762)
.-+.+++ ....+.+|...+..+-.||..-.+.-..-=.|++.+||+.+++++.-..+++.- ...+.+..
T Consensus 232 I~~~~~~----~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~-------s~~V~~~t 300 (359)
T PF10498_consen 232 IESALPE----TKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQA-------SEGVSERT 300 (359)
T ss_pred HHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHH
Confidence 4456677 889999999999888888887766666666788888888888766543333322 22333333
Q ss_pred HHHHhhHHHHHHHHHHHhcCCC
Q 041515 351 SEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 351 ~e~~~k~e~~~~L~~~~~~~~k 372 (762)
.++..=.+..++.+.+++....
T Consensus 301 ~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3333334444444445544433
No 218
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.73 E-value=12 Score=38.97 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 041515 344 LERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQE 416 (762)
Q Consensus 344 ~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~ 416 (762)
++.+.+.+|++++....++..++.+ ++.|.++.=..|+++.++|-..||++++.-++
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~----------------al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~~ 214 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVD----------------ALKKQSEGLQDEYDRLLEEYSKLQEQIESGGK 214 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHcccHHHHHHHHHHHHHHHHhccCC
Confidence 3444455555555555555544443 44555566677889999999999999886543
No 219
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=81.29 E-value=11 Score=46.41 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhhhhcccCcHHHHHHHHHHHH
Q 041515 242 NRDESLMEAVTAKTSELCDPEEEYQLLKAAAE 273 (762)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e 273 (762)
.+.+.+.+++...+.++++.|++++..++...
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~ 298 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKLNVYRQQRD 298 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33555567777777777778888777776543
No 220
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=81.16 E-value=1.3e+02 Score=37.57 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=6.7
Q ss_pred CchhHHHHHHHHHH
Q 041515 555 FNFPIFLTVIHYAV 568 (762)
Q Consensus 555 F~~Pl~Lt~~q~l~ 568 (762)
.+.|++++.+.+++
T Consensus 38 Ls~~~v~Ll~Giil 51 (810)
T TIGR00844 38 IGESMVASIFGLIV 51 (810)
T ss_pred CcHHHHHHHHHHHh
Confidence 44555555444443
No 221
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.06 E-value=1.3e+02 Score=35.77 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=55.0
Q ss_pred HHHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCCCCCCCCChhHHHHHHhhHHHHHHHHhcCCC--CCCc
Q 041515 46 VILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYI--GDIS 123 (762)
Q Consensus 46 ~ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~~l~~~lP~~msaRfr~~~~lA~a~k~~Gy~--~dig 123 (762)
+.|..=|-.-|.+=|-.+..+..=++..+..+--=...-.||++++| + |.=..+.+..|++||+ +.++
T Consensus 77 ~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~--------~--r~EeEV~~ilK~L~YPf~~siS 146 (581)
T KOG0995|consen 77 RQIYNFLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFP--------E--RIEEEVVQILKNLKYPFLLSIS 146 (581)
T ss_pred HHHHHHHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccc--------h--hHHHHHHHHHHhCCCCcccchh
Confidence 45667777778774433344433333333332223334568888887 2 4567899999999998 5555
Q ss_pred ccc-cccC-ChHHHHHHHHHHHHHh
Q 041515 124 YYK-FLYP-SEEDLYKLIRFLVERL 146 (762)
Q Consensus 124 y~t-fLY~-~~~dlr~l~~fLiekL 146 (762)
|+. ---| |=+-+=..+-|||+-.
T Consensus 147 s~~a~gspH~WP~iL~mlhWlvdlI 171 (581)
T KOG0995|consen 147 SLQAAGSPHNWPHILGMLHWLVDLI 171 (581)
T ss_pred hhccCCCCCccHHHHHHHHHHHHHH
Confidence 322 1111 2266777888888755
No 222
>PRK09039 hypothetical protein; Validated
Probab=81.02 E-value=99 Score=34.56 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=52.7
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYE 460 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le 460 (762)
.|.-+.-..+.-++..+..-..++.-|+.||..+.+++.+.=+.+|+.-=++ ......|.+|+
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~-----------------~~~~~~i~~L~ 178 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD-----------------RESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 4455555778888888888888999999999999888665544444432222 22334455555
Q ss_pred HHHHHHhcc-ccchhhhhhhH
Q 041515 461 KKLAAVASR-SLNVDKLQADV 480 (762)
Q Consensus 461 ~qi~~~~~k-~~nle~i~~D~ 480 (762)
..|...-.+ ..+|++...++
T Consensus 179 ~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 179 RRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 555555433 35666666666
No 223
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.84 E-value=39 Score=37.32 Aligned_cols=133 Identities=17% Similarity=0.251 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH---HHHHHHHHhh----------c--hHHHHHHHHHHHHHHHHHHHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWDALKESLEEK---KRSLEESLYA----------N--ELEAQAKLLKLREVELERQSV 349 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~---~~~l~~~~~~----------~--~~e~~~k~~~ik~~~~~~~~~ 349 (762)
+=..|...+..+.++...|..+-+..|..+-+- ..-|++.+.. + ..|-..-+.+++.++.+.+++
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555444221 1112222221 1 134444577888888899999
Q ss_pred HHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHH-------HHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH-------
Q 041515 350 LSEIRKREDEYSKLSADLEKQPKVASRRSYIERI-------KEITKNSRKVDTDIERILKETRELQLESNSIQ------- 415 (762)
Q Consensus 350 ~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI-------~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~------- 415 (762)
..+++.-.++.+.+..| |..|-.+. .-+++.=..-=-||+..+.|.|.|+..++.++
T Consensus 146 e~d~qs~lDEkeEl~~E---------RD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTE---------RDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777777665 44443221 12222222222356666666666555554444
Q ss_pred HHHHHHHHHHH
Q 041515 416 ERLHRTYAVVD 426 (762)
Q Consensus 416 ~~l~Rtf~v~d 426 (762)
..+.+..+.+|
T Consensus 217 ~~i~KYK~~le 227 (319)
T PF09789_consen 217 QTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHH
Confidence 44555555555
No 224
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=80.83 E-value=9 Score=33.00 Aligned_cols=54 Identities=9% Similarity=0.319 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHH
Q 041515 344 LERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIE 398 (762)
Q Consensus 344 ~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~ 398 (762)
..++.+...+..-++++.++.-|+..+|. ..|..|..|+.+.-..+.+=+.++.
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPP-SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777888888999999999999977 5589999998887777776666654
No 225
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.68 E-value=1.7e+02 Score=37.13 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 341 EVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 341 ~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R 420 (762)
.++.++..++.++..+++...+ +.+|=+.+. ++..=-+|+-++-++|..-+.+..+--++...++||+..++++=.+
T Consensus 266 ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke--~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~ 342 (1141)
T KOG0018|consen 266 KIRRELQKVDKKISEKEEKLAE-RPELIKVKE--NASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEE 342 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhHHhhcch--hhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666656555555 222222222 2333446788888888888888888888888888888777766544
Q ss_pred HHH
Q 041515 421 TYA 423 (762)
Q Consensus 421 tf~ 423 (762)
--.
T Consensus 343 fek 345 (1141)
T KOG0018|consen 343 FEK 345 (1141)
T ss_pred HHH
Confidence 333
No 226
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.54 E-value=1.8e+02 Score=37.12 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 041515 316 EKKRSLEESLY 326 (762)
Q Consensus 316 ~~~~~l~~~~~ 326 (762)
++++.+++.+.
T Consensus 483 ~~~~~~k~~L~ 493 (1041)
T KOG0243|consen 483 EEKEKLKSKLQ 493 (1041)
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 227
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.39 E-value=1.5e+02 Score=36.06 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 404 TRELQLESNSIQERLHRTYAVVDD 427 (762)
Q Consensus 404 tr~lqkein~~~~~l~Rtf~v~de 427 (762)
..-||-|.+.++.++.|--...+.
T Consensus 277 v~~LqeE~e~Lqskl~~~~~l~~~ 300 (716)
T KOG4593|consen 277 VGLLQEELEGLQSKLGRLEKLQST 300 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777776555443
No 228
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.33 E-value=1.5e+02 Score=37.67 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESL 314 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl 314 (762)
.+.-++++...+.+.++.+..+....++.-..+
T Consensus 225 vE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei 257 (1141)
T KOG0018|consen 225 VEACIEKANDELSRLNAEIPKLKERMDKKEREI 257 (1141)
T ss_pred hhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 355566666666555555555555544444333
No 229
>PF09762 KOG2701: Coiled-coil domain-containing protein (DUF2037); InterPro: IPR019159 This entry represents a family of coiled-coil-containing proteins conserved from plants to vertebrates. It includes Drosophila fidipidine, whose function is unknown.
Probab=80.18 E-value=7.5 Score=39.49 Aligned_cols=96 Identities=15% Similarity=0.250 Sum_probs=82.4
Q ss_pred HHHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCCC----CCCCCChhHHHHHHhhHHHHHHHHhcCCCCC
Q 041515 46 VILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMT----FGTSLPHSMAEKFKICTDISSAIKNLGYIGD 121 (762)
Q Consensus 46 ~ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~~----l~~~lP~~msaRfr~~~~lA~a~k~~Gy~~d 121 (762)
..|++.|--+||==+ =|.+|+.| +.||-+++-||..++.+.+ +.-.. +|-+|...|..|..+++++|.+-.
T Consensus 3 ~~I~~~L~~aGY~Ra-Rv~~Ls~f--DkivGGi~W~i~~~~~~v~~dllf~E~~--~i~~Ki~~~ekIv~~L~~m~CP~~ 77 (182)
T PF09762_consen 3 QEILDLLSAAGYHRA-RVKSLSPF--DKIVGGITWCITRCNVDVDVDLLFQENS--TIGQKIALCEKIVEALPKMKCPHR 77 (182)
T ss_pred HHHHHHHHHcCccHH-HhcCCChH--HHHHhHHHHHHHhcCCCCCccchhcccc--cHHHHHHHHHHHHHHHHhCCCCCC
Confidence 357888888998774 46788777 4799999999999976655 22223 999999999999999999999999
Q ss_pred CcccccccCChHHHHHHHHHHHHHh
Q 041515 122 ISYYKFLYPSEEDLYKLIRFLVERL 146 (762)
Q Consensus 122 igy~tfLY~~~~dlr~l~~fLiekL 146 (762)
+.=|.++==+-.-+..++-||+++.
T Consensus 78 l~phQi~glDf~~i~PVvqWLvkr~ 102 (182)
T PF09762_consen 78 LEPHQIQGLDFIHIFPVVQWLVKRV 102 (182)
T ss_pred CCHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999888899999999999998
No 230
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.16 E-value=20 Score=44.34 Aligned_cols=6 Identities=17% Similarity=0.263 Sum_probs=2.3
Q ss_pred hcCCCC
Q 041515 115 NLGYIG 120 (762)
Q Consensus 115 ~~Gy~~ 120 (762)
+-|...
T Consensus 136 ~~g~i~ 141 (771)
T TIGR01069 136 DDGKVK 141 (771)
T ss_pred CCCEEC
Confidence 334333
No 231
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.14 E-value=65 Score=34.40 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK 317 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~ 317 (762)
.....+++..+...+.++..|..+.+..+..+.++
T Consensus 55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQK 89 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665555555544
No 232
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=79.98 E-value=91 Score=33.48 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh--------cCCCcc-----ChHH---HHHHHHHHHhhhhhhHHh
Q 041515 333 QAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE--------KQPKVA-----SRRS---YIERIKEITKNSRKVDTD 396 (762)
Q Consensus 333 ~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~--------~~~k~~-----~R~~---Yt~RI~Eiv~nirKQ~~e 396 (762)
..++.++++.-.+.+.....++.+-+.+.....-|. .+|... .-.. =.+++++=+..+++|+++
T Consensus 83 ~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~ 162 (296)
T PF13949_consen 83 RKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREE 162 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555666666666555554433332 244421 1111 235666666777777777
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc--CccchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041515 397 IERILKETRELQLES-NSIQERLHRTYAVVDDMIFREA--KKDQSFEQVSEKILATDRVRREIAEYEKKLAA 465 (762)
Q Consensus 397 I~Kil~dtr~lqkei-n~~~~~l~Rtf~v~delif~~a--kkd~~~~~l~~~i~~tg~~~rei~~le~qi~~ 465 (762)
+..-+.+ + ++.++ ..+-..++|.=....+.||.+. |.++....|-+.+...+.+.++|.+...+...
T Consensus 163 ~~~~lk~-~-~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~ 232 (296)
T PF13949_consen 163 LLEQLKE-K-LQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQ 232 (296)
T ss_dssp HHHHHHH-------HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-H-HhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555554 1 22222 2222223332113345666553 33677888888889999998888888777743
No 233
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=79.82 E-value=1.3e+02 Score=35.32 Aligned_cols=128 Identities=22% Similarity=0.328 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~ 417 (762)
+|+++++...++.+.+...+.-|+.|+..++ ++.+.+.-=+.+..++....++|+|+.-.-.+.
T Consensus 355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~----------------~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~ 418 (570)
T COG4477 355 ELKELESVLDEILENIEAQEVAYSELQDNLE----------------EIEKALTDIEDEQEKVQEHLTSLRKDELEAREN 418 (570)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHH----------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777666 344444444556677788888888888777777
Q ss_pred HHHHHHHHHHHHHhhcCcc-ch-HHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHh
Q 041515 418 LHRTYAVVDDMIFREAKKD-QS-FEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKEN 487 (762)
Q Consensus 418 l~Rtf~v~delif~~akkd-~~-~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en 487 (762)
++|-=.-+-++-..--|.. |+ =+..+.+..++|.- +++|..|+. .++-|.+.+.++++....--
T Consensus 419 l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~---i~~l~~eLs---e~pinm~~v~~~v~~a~~~m 484 (570)
T COG4477 419 LERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHE---IQDLMKELS---EVPINMEAVSALVDIATEDM 484 (570)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhH---HHHHHHHHh---hcCCcHHHHHHHHHHHHHHH
Confidence 7775444333322222221 12 35667777777754 777776654 45688888888887554433
No 234
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.79 E-value=1.3e+02 Score=37.07 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc--cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515 340 REVELERQSVLSEIRKREDEYSKLSADLEKQPKV--ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~--~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~ 417 (762)
+++..+.+++.++++..-..|+||...+..+.-. .-|+. -+-..+--...+-|.+++..-+.+.+.+-.+-+.++.+
T Consensus 681 ~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~-~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~ 759 (970)
T KOG0946|consen 681 KELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSK-QRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKE 759 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555444433111 00100 11112233445556666666666666666666666665
Q ss_pred HHH
Q 041515 418 LHR 420 (762)
Q Consensus 418 l~R 420 (762)
++.
T Consensus 760 L~k 762 (970)
T KOG0946|consen 760 LNK 762 (970)
T ss_pred HHh
Confidence 543
No 235
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.26 E-value=58 Score=31.76 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 041515 341 EVELERQSVLSEIRKREDEYSKLSADLEK 369 (762)
Q Consensus 341 ~~~~~~~~~~~e~~~k~e~~~~L~~~~~~ 369 (762)
+++.+++.+..+...-++.|..|...|..
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666654
No 236
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=79.10 E-value=8.6 Score=40.18 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc--CCCCC---CCCCCccchhHHHHHHHHHH
Q 041515 530 VAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF--SIIPV---SPPAITTPFSSLFALGVVMS 604 (762)
Q Consensus 530 ~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~--~~~~~---~~~~~~~~~~~l~plgl~~~ 604 (762)
+|+..+++.+...++..|-...--+|. -.--.++.-+.+..++..+..+ .+-|. ..+ +......++.-|++..
T Consensus 158 ~Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl-~~d~l~am~ISgl~sv 235 (309)
T COG5070 158 LWMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNL-SVDSLMAMFISGLCSV 235 (309)
T ss_pred EEEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCC-ChHHHHHHHHHHHHHh
Confidence 477788888888888888776644554 3344556666665554444321 11111 011 1223446777788777
Q ss_pred HHHHHHHhhhhcchhHHHHHHHhhhHHH-HHHHHHHHhcccccHHHHHHHHHHHH
Q 041515 605 FATGLANTSLKHNSVGFYQMSKIAVTPT-IVLAEFILFSKTISYKKVLALAIVSV 658 (762)
Q Consensus 605 l~i~l~N~SL~yvsVs~~qmlKsas~P~-~vll~~l~lgek~s~~~~lsLlli~~ 658 (762)
+....+-|++.-.|...|.|+.. ..-. .++...++|++..++..+.++++.++
T Consensus 236 giSy~saWcvrVtSSTtySMvGA-LNKlp~alaGlvffdap~nf~si~sillGfl 289 (309)
T COG5070 236 GISYCSAWCVRVTSSTTYSMVGA-LNKLPIALAGLVFFDAPVNFLSIFSILLGFL 289 (309)
T ss_pred hhhhccceeEeehhhhHHHHHHH-hhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence 88888899999999999999984 4333 35566788888888888777666553
No 237
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=78.98 E-value=30 Score=42.07 Aligned_cols=94 Identities=21% Similarity=0.282 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHhhhhh-------hHHhHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHH
Q 041515 375 SRRSYIERIKEITKNSRK-------VDTDIE---RILKETR---ELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQ 441 (762)
Q Consensus 375 ~R~~Yt~RI~Eiv~nirK-------Q~~eI~---Kil~dtr---~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~ 441 (762)
-|+.+-.+|.|+.||||= +..++. +-..++- +++-.......+..+.=...|-...-++..|+-|.+
T Consensus 301 ~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e 380 (670)
T KOG0239|consen 301 ERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE 380 (670)
T ss_pred HHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH
Confidence 377777899999999983 344444 2233333 355555555555555523344444555566665544
Q ss_pred HH----------------------------H--HHHHhhHHHHHHHHHHHHHHHHhc
Q 041515 442 VS----------------------------E--KILATDRVRREIAEYEKKLAAVAS 468 (762)
Q Consensus 442 l~----------------------------~--~i~~tg~~~rei~~le~qi~~~~~ 468 (762)
+- + ..++-|.+-|.+++|-..+...++
T Consensus 381 ~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~ 437 (670)
T KOG0239|consen 381 VSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKS 437 (670)
T ss_pred HHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhcc
Confidence 31 1 245778888888888888877766
No 238
>PRK11519 tyrosine kinase; Provisional
Probab=78.93 E-value=1.6e+02 Score=36.24 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHH
Q 041515 524 KICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFL 561 (762)
Q Consensus 524 ~~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~L 561 (762)
+.+-.++++++-+++++++.++--++-. ++..|--+
T Consensus 424 ~~l~l~~~~~~Gl~lg~~~~~~~e~~d~--~i~~~~~l 459 (719)
T PRK11519 424 KALIILGAIILGLMLSIVGVLLRSLFNR--GIESPQVL 459 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcCCHHHH
Confidence 3344455666667777777776444333 35555544
No 239
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=78.31 E-value=1.5e+02 Score=35.07 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=24.8
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041515 389 NSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAK 434 (762)
Q Consensus 389 nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~ak 434 (762)
-+..-+.++.++-.|...|+..+.++...|+|.=..+..+-=+...
T Consensus 289 ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 289 ELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555566666666666666666555555555444433
No 240
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.86 E-value=1.5e+02 Score=35.35 Aligned_cols=9 Identities=0% Similarity=-0.130 Sum_probs=4.9
Q ss_pred HHHHHhhhh
Q 041515 74 LVSICGQSL 82 (762)
Q Consensus 74 ~v~~~~~cl 82 (762)
+++|+.-|+
T Consensus 38 ll~al~~~~ 46 (563)
T TIGR00634 38 IIDALSLLG 46 (563)
T ss_pred HHHHHHHHh
Confidence 556555554
No 241
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.84 E-value=82 Score=37.53 Aligned_cols=95 Identities=22% Similarity=0.367 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHH
Q 041515 377 RSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREI 456 (762)
Q Consensus 377 ~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei 456 (762)
..|.+||.++-+.++++++|+.-.-....+++++|..+..+|+|-=.-++ .+.+++.... ...++|
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~----------~~~~~I 483 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIR----------ARDRRI 483 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHH----------HHHHHH
Confidence 35999999999999999999999999999999999999999887543333 3333332221 223445
Q ss_pred HHHHHHHHHHhccccchhhhhhhHHHHHHHhh
Q 041515 457 AEYEKKLAAVASRSLNVDKLQADVDVIMKENE 488 (762)
Q Consensus 457 ~~le~qi~~~~~k~~nle~i~~D~~~i~~en~ 488 (762)
..|+.++..+.. -.|.+.+.+.++++-+.
T Consensus 484 ~~L~~~L~e~~~---~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 484 ERLEKELEEKKK---RVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 555555554433 34455555555555444
No 242
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.45 E-value=8.8 Score=42.03 Aligned_cols=134 Identities=11% Similarity=0.040 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcCCCC---C-CCCCCccchhHHHHHHH-H
Q 041515 529 VVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFSIIP---V-SPPAITTPFSSLFALGV-V 602 (762)
Q Consensus 529 ~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~~~~---~-~~~~~~~~~~~l~plgl-~ 602 (762)
-.|+..++++.....++.|.....-++. -+-+.++.-+.+...+.+.. .++-.+ . .+.....++...+.++- +
T Consensus 159 Y~w~~~n~~~~a~~~v~~kk~vd~~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~ 237 (314)
T KOG1444|consen 159 YSWALANCLTTAAFVVYVKKSVDSANLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVM 237 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHH
Confidence 3566777777777777777776653332 11122333333333332222 112111 0 00000111222233333 3
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheee
Q 041515 603 MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVAT 664 (762)
Q Consensus 603 ~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~ 664 (762)
-.+...++.++..++|...++++- +..-+. .+...++.++.++|.-.+|+.+.++|.++.+
T Consensus 238 gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 238 GFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHh
Confidence 334456666777777777666665 444443 3444444456666666666666665555443
No 243
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.26 E-value=19 Score=41.07 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=85.4
Q ss_pred HhhccCCchhHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCccchhHHH--HHHHHHHHHHHHHHhhhhcchhHHHH-H
Q 041515 549 VMGQVGFNFPIFLTVIHYAVAWILLAIFKAF-SIIPVSPPAITTPFSSLF--ALGVVMSFATGLANTSLKHNSVGFYQ-M 624 (762)
Q Consensus 549 vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~~~~~~~~~~~~~~~~l~--plgl~~~l~i~l~N~SL~yvsVs~~q-m 624 (762)
++...|+.-|..+.++=++....+....... +.-+. ......++++++ |.-.+.++.+.+.|.++.++...... |
T Consensus 219 lYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~-~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm 297 (464)
T KOG3764|consen 219 LYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD-STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWM 297 (464)
T ss_pred hHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc-ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHH
Confidence 3444577778887777666655544433211 11110 111334455554 44555678888999999888654433 3
Q ss_pred HHhhhHHH------------H-HHHHHHH--hccccc--HHHHHHHHHHHHhhheeeecCcc----ccHHHHHHHHHHHH
Q 041515 625 SKIAVTPT------------I-VLAEFIL--FSKTIS--YKKVLALAIVSVGVAVATVTDLE----FNIFGAIIAVAWII 683 (762)
Q Consensus 625 lKsas~P~------------~-vll~~l~--lgek~s--~~~~lsLlli~~GV~la~~~d~~----fs~~G~ilalls~l 683 (762)
.++..+|- . ++...++ +..|++ .+......++++|+.+....-.+ .-.-+..++++...
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~ 377 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGL 377 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHH
Confidence 33322221 1 1222222 224555 44556666777786655442211 11123333333333
Q ss_pred HHHHHHHHHHHhhhcC---CCCHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 041515 684 PSAINKILWSNLQQQG---NWTALALMWKTTPVTVFFLLALMPWLDPP 728 (762)
Q Consensus 684 ~~Al~~V~~kkllk~~---~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~ 728 (762)
.++...-....+...- +.+.+..+|...-.+..+-..++|.+.+.
T Consensus 378 ~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~ 425 (464)
T KOG3764|consen 378 ADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGS 425 (464)
T ss_pred HHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccch
Confidence 4444433334444322 23344455544444444445555666554
No 244
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.25 E-value=75 Score=31.02 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWD 308 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe 308 (762)
|.+.+....+.+.+-+..|..+-+
T Consensus 39 ~~e~~~~daEn~k~eie~L~~el~ 62 (140)
T PF10473_consen 39 NKECLILDAENSKAEIETLEEELE 62 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 245
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=76.79 E-value=56 Score=30.21 Aligned_cols=89 Identities=17% Similarity=0.300 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHhcCCCccChHHHH--------HHHHHHHhhhhhhHHhHHHHHHH
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSK---LSADLEKQPKVASRRSYI--------ERIKEITKNSRKVDTDIERILKE 403 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~---L~~~~~~~~k~~~R~~Yt--------~RI~Eiv~nirKQ~~eI~Kil~d 403 (762)
.+.+.+.++++++.+...++..+..... -..+++.+|.+ +.-|- +=.-|++.++++..+.|+ ..
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d--~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie---~~ 82 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDD--TPVYKSVGNLLVKTDKEEAIQELKEKKETLE---LR 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--chhHHHhchhhheecHHHHHHHHHHHHHHHH---HH
Confidence 4455566666666666666555544444 44566666643 33332 334467777777766663 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 404 TRELQLESNSIQERLHRTYAVVDDM 428 (762)
Q Consensus 404 tr~lqkein~~~~~l~Rtf~v~del 428 (762)
.+.+.+++..+..++...-.-+.++
T Consensus 83 i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 83 VKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666655555544444433
No 246
>PF13166 AAA_13: AAA domain
Probab=76.61 E-value=1.9e+02 Score=35.27 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 359 EYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYA 423 (762)
Q Consensus 359 ~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~ 423 (762)
....|.++.+.....+.=..+...+-.+..-+..-.+.|...=..+..+.++.+.+..++.+.+.
T Consensus 341 l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~ 405 (712)
T PF13166_consen 341 LKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLI 405 (712)
T ss_pred HHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333334445555555555555555655555666777777777777777654
No 247
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=76.59 E-value=14 Score=38.66 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 041515 673 FGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWL 725 (762)
Q Consensus 673 ~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~ 725 (762)
.|++++++++++|+...+..|.+ . +++|.++.++-..++++++++.....
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~--~~~~~~i~~~R~~~a~~~l~~~~~~~ 51 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K--PLPATDILGHRMIWSFPFMLLSVTLF 51 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999998863 2 49999999999999988876655443
No 248
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=76.58 E-value=0.81 Score=55.94 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccccchhhhhhhHHHHHHHhhhhhhhccC
Q 041515 456 IAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHR 496 (762)
Q Consensus 456 i~~le~qi~~~~~k~~nle~i~~D~~~i~~en~~~~s~~g~ 496 (762)
+++||............|-...++..-++.+|..|++-...
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~ 299 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLER 299 (722)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44455444444444466666666777777777666555443
No 249
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.57 E-value=18 Score=38.77 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515 357 EDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN 412 (762)
Q Consensus 357 ~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein 412 (762)
..+++||++-+|.|-- . +---+..|+|-+.|+..--|-++
T Consensus 123 RkEIkQLkQvieTmrs-----s-----------L~ekDkGiQKYFvDINiQN~KLE 162 (305)
T PF15290_consen 123 RKEIKQLKQVIETMRS-----S-----------LAEKDKGIQKYFVDINIQNKKLE 162 (305)
T ss_pred HHHHHHHHHHHHHHHh-----h-----------hchhhhhHHHHHhhhhhhHhHHH
Confidence 4567777777775422 1 11126778888877765444443
No 250
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=76.25 E-value=5.3 Score=44.01 Aligned_cols=138 Identities=18% Similarity=0.246 Sum_probs=72.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh--ccCCchhHHHHHHHHHHHHHHHH-HHHHc--CCCC---CCCCCCccchhHH
Q 041515 525 ICGPVVAMTFNFVVSVGIILTNKLVMG--QVGFNFPIFLTVIHYAVAWILLA-IFKAF--SIIP---VSPPAITTPFSSL 596 (762)
Q Consensus 525 ~~~~~~ai~~~~v~Sv~ii~~NK~vl~--~~gF~~Pl~Lt~~q~l~a~ill~-i~~~~--~~~~---~~~~~~~~~~~~l 596 (762)
..|...++...+.++.-.++. |.++. ..++. |+.+..++--++.+.+. ++... +..- .... +......+
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~-~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~-~~~~~~~~ 238 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILS-KKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAP-WFVTFLIL 238 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccc-cchhhHHH
Confidence 456666665555555555444 55553 35566 77777777777777666 43211 1110 0000 11112222
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheeee
Q 041515 597 FALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 597 ~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~~ 665 (762)
+..+++..+........+..+|.=+|+++-..-.-+++++++++|+++.++...++.++.++|+++.+.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 223333223333444455555555555554221222344567778888888888888888888877643
No 251
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.15 E-value=78 Score=36.12 Aligned_cols=93 Identities=17% Similarity=0.289 Sum_probs=50.5
Q ss_pred hhHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHH-----HHHhhHHHHHHHHH
Q 041515 392 KVDTDIERILKETRELQL-------ESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEK-----ILATDRVRREIAEY 459 (762)
Q Consensus 392 KQ~~eI~Kil~dtr~lqk-------ein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~-----i~~tg~~~rei~~l 459 (762)
-+...+.+++++.++++. ++..+.+.+.+-+.+.-+-+..+.-+.+--++-+.. -.|+-.+++|+.+.
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445556666555555544 444455555555555555555554444433322222 23567888888888
Q ss_pred HHHHHHHhccc-----cchhhhhhhHHHHH
Q 041515 460 EKKLAAVASRS-----LNVDKLQADVDVIM 484 (762)
Q Consensus 460 e~qi~~~~~k~-----~nle~i~~D~~~i~ 484 (762)
|++++-..-.. .++|....=+.+|+
T Consensus 289 EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 289 EEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88887554422 44555444444444
No 252
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.12 E-value=10 Score=39.52 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 341 EVELERQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 341 ~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
.++.+.+++..|...--|.|++|+++++.-
T Consensus 183 al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 183 ALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 344455555555555566666666666543
No 253
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=76.04 E-value=1.1e+02 Score=32.45 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc----cchhhh
Q 041515 401 LKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRS----LNVDKL 476 (762)
Q Consensus 401 l~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~----~nle~i 476 (762)
...-......+..+..++.|+.. |.-|+|+.=...=......+..|.+||.+|...+... .|||+|
T Consensus 148 ~~~~~~ae~~v~~Lek~lkr~I~----------KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~I 217 (239)
T PF05276_consen 148 ARIYNEAEQRVQQLEKKLKRAIK----------KSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQI 217 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555432 4455655333333334446888999999999999876 899999
Q ss_pred hhhHHHHHHHhhhhhhhccCCCch
Q 041515 477 QADVDVIMKENEFLEQQFHRDGRA 500 (762)
Q Consensus 477 ~~D~~~i~~en~~~~s~~g~~~~~ 500 (762)
-..+.+=+.... .+.|+++++
T Consensus 218 SeeIH~~R~~~~---~~~g~~~~~ 238 (239)
T PF05276_consen 218 SEEIHEQRRRRS---AESGPREPG 238 (239)
T ss_pred HHHHHHHHhhCC---CCCCCCCCC
Confidence 999987776655 455555543
No 254
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.79 E-value=2.7e+02 Score=37.00 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
++....+++...++....+.++++.+
T Consensus 298 ~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 298 EERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344444444444444444
No 255
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=75.65 E-value=72 Score=38.59 Aligned_cols=10 Identities=30% Similarity=0.275 Sum_probs=4.5
Q ss_pred hhHHHHHHHH
Q 041515 282 TEFYLEQLDE 291 (762)
Q Consensus 282 ~~~n~~kL~~ 291 (762)
.++-+.||..
T Consensus 161 ~eer~~kl~~ 170 (916)
T KOG0249|consen 161 IEERTRKLEE 170 (916)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 256
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.64 E-value=26 Score=35.78 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALK 311 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r 311 (762)
..-++.|+..+.....++..|..++++.+
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444333
No 257
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=75.53 E-value=67 Score=37.87 Aligned_cols=74 Identities=15% Similarity=0.300 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSI 414 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~ 414 (762)
++-.|+.-..=...+.+.++.|.....+++.. +....+|+.|....+.+-+-.++.++..||+|||+++..
T Consensus 423 ~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~---------~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ 493 (507)
T PF05600_consen 423 HLFMIKSSPRYVDRLVESLQQKLKQEEKLRRK---------REDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEAD 493 (507)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665566677777787777777776554 557889999999999999999999999999999999885
Q ss_pred HHH
Q 041515 415 QER 417 (762)
Q Consensus 415 ~~~ 417 (762)
-.+
T Consensus 494 ISk 496 (507)
T PF05600_consen 494 ISK 496 (507)
T ss_pred HHH
Confidence 444
No 258
>PRK12704 phosphodiesterase; Provisional
Probab=74.88 E-value=1.9e+02 Score=34.37 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhccc------cchhhhhhhHH
Q 041515 438 SFEQVSEKILATD--RVRREIAEYEKKLAAVASRS------LNVDKLQADVD 481 (762)
Q Consensus 438 ~~~~l~~~i~~tg--~~~rei~~le~qi~~~~~k~------~nle~i~~D~~ 481 (762)
.-++|++.+++-- ...+-|++.|++-..+..+. .-.++..+|+.
T Consensus 155 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~~~~ 206 (520)
T PRK12704 155 AKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAADHV 206 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 3445555554322 22233555565555554443 33556666654
No 259
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.84 E-value=22 Score=36.25 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~ 417 (762)
++-.+-.+++....++..+...+..|..++. ....+|.+....|+..+..++-+..+.-.||-+.|.+.++
T Consensus 96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~---------~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 96 QLVELNDELQELEKELSEKERRLAELEAELA---------QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp ------------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666666666655543 5566777888888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 041515 418 LHRTYAVVDDMIFR 431 (762)
Q Consensus 418 l~Rtf~v~delif~ 431 (762)
+.+.=..-+++|=|
T Consensus 167 ~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 167 LRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887777744
No 260
>PRK10869 recombination and repair protein; Provisional
Probab=74.76 E-value=1.9e+02 Score=34.48 Aligned_cols=26 Identities=4% Similarity=-0.013 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhcCC
Q 041515 346 RQSVLSEIRKREDEYSKLSADLEKQP 371 (762)
Q Consensus 346 ~~~~~~e~~~k~e~~~~L~~~~~~~~ 371 (762)
+++-...+...++..+.+..-++.+.
T Consensus 210 L~~e~~~L~n~e~i~~~~~~~~~~L~ 235 (553)
T PRK10869 210 IDEEYKRLANSGQLLTTSQNALQLLA 235 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444555566666666656553
No 261
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=74.46 E-value=1.3e+02 Score=35.51 Aligned_cols=68 Identities=24% Similarity=0.356 Sum_probs=38.7
Q ss_pred HHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhh-hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 350 LSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNS-RKVDTDIERILKETRELQLESNSIQERLHRTYAVV 425 (762)
Q Consensus 350 ~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~ni-rKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~ 425 (762)
...+..|+.++.+|...+...++..+.+.|-.|+.....++ .|| ..++ .|-.|-|.+.-.++|-....
T Consensus 361 ~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ-~~lE-------~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 361 QLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQ-TQLE-------SLGSEKNALRLQLERLETQL 429 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHH-HHHH-------HHHhhhhhccccHHHHHHHH
Confidence 33445677777777777777775555666777777766443 333 2333 33334444444555544433
No 262
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.36 E-value=81 Score=39.23 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=5.9
Q ss_pred hHHHHHHhhHHHHH
Q 041515 98 SMAEKFKICTDISS 111 (762)
Q Consensus 98 ~msaRfr~~~~lA~ 111 (762)
.+..++.-...+.+
T Consensus 120 ~~~~~l~~~~~l~~ 133 (782)
T PRK00409 120 EWVAKIRTLPELEQ 133 (782)
T ss_pred HHHHcCcCcHHHHH
Confidence 34444443444443
No 263
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=74.32 E-value=2.2e+02 Score=35.00 Aligned_cols=87 Identities=23% Similarity=0.260 Sum_probs=52.5
Q ss_pred ccCcHHHHHHHHHHHHHhcC-CCCCh----hHHHHHHHHHHHH----------HhhHHHHHHHHHHHhhH-------HHH
Q 041515 258 LCDPEEEYQLLKAAAEMAFD-DSHPT----EFYLEQLDEQVGA----------KKHNLVELELQWDALKE-------SLE 315 (762)
Q Consensus 258 ~~e~e~~~~~~~~~~e~l~d-~~~~~----~~n~~kL~~~~~~----------~~~~l~~L~~qWe~~r~-------pl~ 315 (762)
..++++++..++.-+-...+ ..+|+ .+-|+||+..++. .+.|+..|..+.-+... .|.
T Consensus 431 ~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~ 510 (762)
T PLN03229 431 VRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLM 510 (762)
T ss_pred CccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHH
Confidence 55667777766654333321 22333 3667777777764 35567777766666642 267
Q ss_pred HHHHHHHHHHhhc------hHHHHHHHHHHHHHHH
Q 041515 316 EKKRSLEESLYAN------ELEAQAKLLKLREVEL 344 (762)
Q Consensus 316 ~~~~~l~~~~~~~------~~e~~~k~~~ik~~~~ 344 (762)
++...|+++...+ .++.+.|++.+++...
T Consensus 511 eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 511 EKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH
Confidence 7777777776643 3456677777766554
No 264
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.88 E-value=1.1e+02 Score=31.47 Aligned_cols=85 Identities=22% Similarity=0.229 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYA-NELEAQAKLLKLREVELERQSVLSEIRKREDEYS 361 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~-~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~ 361 (762)
+..+.+++.-+......-..+..+.++++....+-....+.++.. +++=+..=+.+...++..+..+...+..-.....
T Consensus 36 e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~ 115 (221)
T PF04012_consen 36 EEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVE 115 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555444444444444444432 2222333333444444444444444444444444
Q ss_pred HHHHHH
Q 041515 362 KLSADL 367 (762)
Q Consensus 362 ~L~~~~ 367 (762)
+|...+
T Consensus 116 ~l~~~l 121 (221)
T PF04012_consen 116 KLKEQL 121 (221)
T ss_pred HHHHHH
Confidence 443333
No 265
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=73.78 E-value=91 Score=30.29 Aligned_cols=76 Identities=29% Similarity=0.418 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLR-EVELERQSVLSEIRKREDEYSKL 363 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik-~~~~~~~~~~~e~~~k~e~~~~L 363 (762)
.+++|+..++..+.++... +..-..+..+.+.+...+.....|.+ +++ .+.+...+...|+++|+.++.+|
T Consensus 74 ~~~rL~~~~~~~ere~~~~----~~~~~~l~~~~~~~~~~~k~~kee~~----klk~~~~~~~tq~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 74 DVERLKEQLEELERELASA----EEKERQLQKQLKSLEAKLKQEKEELQ----KLKNQLQQRKTQYEHELRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554433 22333333444444444333333322 222 23334446778999999999999
Q ss_pred HHHHh
Q 041515 364 SADLE 368 (762)
Q Consensus 364 ~~~~~ 368 (762)
+..+.
T Consensus 146 k~rL~ 150 (151)
T PF11559_consen 146 KERLN 150 (151)
T ss_pred HHHhc
Confidence 88764
No 266
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=73.56 E-value=45 Score=35.77 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHH-HHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HH
Q 041515 558 PIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFA-LGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VL 635 (762)
Q Consensus 558 Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~p-lgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vl 635 (762)
|+++.++++...++...++......|. +..+.. -|++.+.+..+.--..+.+.++....+=+++..++ -+
T Consensus 27 g~~fQw~~~~~i~~~g~~v~~~~~~p~--------f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~ 98 (254)
T PF07857_consen 27 GFFFQWVMCSGIFLVGLVVNLILGFPP--------FYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWA 98 (254)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCc--------ceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 777888877777777666654433321 112222 33556666666667778888888888876555554 22
Q ss_pred HHHH-Hhcc-----cccHHHHHHHHHHHHhhheeee
Q 041515 636 AEFI-LFSK-----TISYKKVLALAIVSVGVAVATV 665 (762)
Q Consensus 636 l~~l-~lge-----k~s~~~~lsLlli~~GV~la~~ 665 (762)
.+.+ +||. +-++..+++++++++|++++..
T Consensus 99 ~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 99 SGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred HhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 3333 5662 3467788999999999888765
No 267
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.48 E-value=85 Score=35.21 Aligned_cols=51 Identities=10% Similarity=0.249 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 376 RRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVD 426 (762)
Q Consensus 376 R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~d 426 (762)
+..|-.++-.+-..+..-+.+|...-.+...++.+++..+..++|.-...+
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666667777777777777777777777777777776666544333
No 268
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=73.45 E-value=1.1 Score=54.84 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHhhhhhhhccC
Q 041515 475 KLQADVDVIMKENEFLEQQFHR 496 (762)
Q Consensus 475 ~i~~D~~~i~~en~~~~s~~g~ 496 (762)
.|...+...++++..|-...|.
T Consensus 340 ~l~~~l~~lq~~~~~L~ek~g~ 361 (722)
T PF05557_consen 340 DLARALVQLQQENASLTEKLGS 361 (722)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4444455555555544444444
No 269
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.27 E-value=28 Score=32.27 Aligned_cols=61 Identities=5% Similarity=0.034 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHHhh-hHHHHHHHHHHHhcccccHHHHHHHHHHHHhhhee
Q 041515 603 MSFATGLANTSLKHNSVGFYQMSKIA-VTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVA 663 (762)
Q Consensus 603 ~~l~i~l~N~SL~yvsVs~~qmlKsa-s~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la 663 (762)
|++.+..+-++...-|.+---++.=. +..+++.++.+++||+++|....|-+.++++|.++
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 44444444555554444333333322 22334788888999999999999999998777654
No 270
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.22 E-value=68 Score=33.52 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
+++|+++-+...+.++.+.....+.+|++.++.+
T Consensus 170 erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 3455555555555555555555555555555555
No 271
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=73.17 E-value=30 Score=41.24 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 340 REVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
++..++.+++..|++...+.++.++.+++
T Consensus 215 ~~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 215 QKIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555554
No 272
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.00 E-value=53 Score=34.66 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
|..+++.+..++..-.+.++..+..++++.++.+
T Consensus 9 K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~ 42 (230)
T PF10146_consen 9 KTLELEKLKNEILQEVESLENEEKCLEEYRKEME 42 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433333333333
No 273
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.00 E-value=84 Score=33.44 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 377 RSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDM 428 (762)
Q Consensus 377 ~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~del 428 (762)
..--.++-+.-.-|....++..+=-.++..+|.++........++=.-..++
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555556666666666666666555554444333
No 274
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.73 E-value=15 Score=38.12 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
++.+++.+..++.++++.-+...++|...+.++|.
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 33444444444445555555555555555555544
No 275
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=72.23 E-value=1.1e+02 Score=36.23 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 395 TDIERILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 395 ~eI~Kil~dtr~lqkein~~~~~l~R 420 (762)
-||.++|-|..+-..-+=-+++.+.=
T Consensus 399 vEMaRVLMeRNqYKErLMELqEavrW 424 (832)
T KOG2077|consen 399 VEMARVLMERNQYKERLMELQEAVRW 424 (832)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 58888888877665555555544443
No 276
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=72.06 E-value=2.1e+02 Score=33.71 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=45.8
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhcCccch-HHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQ----------ERLHRTYAVVDDMIFREAKKDQS-FEQVSEKI 446 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~----------~~l~Rtf~v~delif~~akkd~~-~~~l~~~i 446 (762)
+.+.+-+..+.++=++|.+|++-+..+=+|.|-+. |.--|=|+|+=+=|-+-|.+... ..+|-+.|
T Consensus 343 ~~~~~~~~~l~~~~~~I~~i~~~I~~Ia~QTNLLALNAaIEAARAGE~GrGFAVVA~EVr~LA~~t~~st~~I~~~i 419 (553)
T PRK15048 343 DGVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALI 419 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777788888888888888888653 44568999998888888877443 33443333
No 277
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.02 E-value=53 Score=33.65 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=30.3
Q ss_pred hhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 041515 255 TSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALK 311 (762)
Q Consensus 255 ~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r 311 (762)
..+++.-.+.+..+.+++..|.. -..|+.-|+..++. |..++..+.++-
T Consensus 61 ~l~idd~~~~f~~~~~tl~~LE~----~GFnV~~l~~RL~k----LL~lk~~~~~~~ 109 (190)
T PF05266_consen 61 KLQIDDSRSSFESLMKTLSELEE----HGFNVKFLRSRLNK----LLSLKDDQEKLL 109 (190)
T ss_pred HcccCCcHHHHHHHHHHHHHHHH----cCCccHHHHHHHHH----HHHHHHhHHHHH
Confidence 35566667777777776655555 37788888774443 555555544443
No 278
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=71.59 E-value=26 Score=33.85 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHHHHHHHHHHHHHHH
Q 041515 674 GAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLGFLL 753 (762)
Q Consensus 674 G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~~~i~lsgvlgf~l 753 (762)
.+++++++.++.+++..+..++-+..+ |++.-.+.+...+++.++++..+.+....... .+.+.|.+ ++|++|.+.
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~-~~~p~w~~--lGG~lG~~~ 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRPSLASL-SSVPWWAY--LGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhcccccchh-ccCChHHh--ccHHHHHHH
Confidence 356777888888888888777765433 58888888888888888877777766422111 12222332 277777776
Q ss_pred HHHHHhh
Q 041515 754 QWSGALA 760 (762)
Q Consensus 754 n~s~fl~ 760 (762)
.++..++
T Consensus 78 V~~~~~~ 84 (138)
T PF04657_consen 78 VLSNIIL 84 (138)
T ss_pred HHHHHHH
Confidence 6665554
No 279
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=71.46 E-value=85 Score=33.23 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 041515 534 FNFVVSVGIILTNKLVMGQV 553 (762)
Q Consensus 534 ~~~v~Sv~ii~~NK~vl~~~ 553 (762)
+|...++...+..++++..+
T Consensus 11 ~~l~lTl~~y~~~~~l~~r~ 30 (232)
T PRK04288 11 FGILVSLIAFGIGTILFKKS 30 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67777788888889988874
No 280
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.43 E-value=1.3e+02 Score=31.13 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=37.1
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 318 KRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 318 ~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
+--||..+..-..|...|..+|-.++..+++...+++.++.....|...+.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~ 62 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLR 62 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334555555555666778888888888888888888888888888765543
No 281
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.40 E-value=45 Score=36.80 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 041515 397 IERILKETRELQ 408 (762)
Q Consensus 397 I~Kil~dtr~lq 408 (762)
+.-.......|+
T Consensus 122 ~~~~~~~L~~L~ 133 (314)
T PF04111_consen 122 YEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHCHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 282
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=70.96 E-value=55 Score=30.23 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 343 ELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 343 ~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
+.++..+.+.+...+.-..+++.+++.+|.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt 63 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPT 63 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345566667777778888899999999998
No 283
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.80 E-value=2.1e+02 Score=35.35 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHHHHH
Q 041515 288 QLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLY-----ANELEAQAKLLKLREVELERQSV 349 (762)
Q Consensus 288 kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~-----~~~~e~~~k~~~ik~~~~~~~~~ 349 (762)
.++..-+++.+-+.-|.+|.++.+..|.+-.+++++=.. .-..|++..++++.+++.++.++
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l 323 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNEL 323 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555444444332111 12345555666666666655443
No 284
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=70.69 E-value=83 Score=29.37 Aligned_cols=101 Identities=12% Similarity=0.158 Sum_probs=74.7
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cchHHHHHHHHHHhhHHHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKK-DQSFEQVSEKILATDRVRREIAEY 459 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akk-d~~~~~l~~~i~~tg~~~rei~~l 459 (762)
+.+.++-..+.-++++|.+.-.....-.++++.-...|..++.-.|..+=.+-.+ ..+-...-+.....-....||..|
T Consensus 7 re~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l 86 (126)
T PF13863_consen 7 REMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKL 86 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788889999999999999999999999999999999999999888654333 444445555555566666777777
Q ss_pred HHHHHHHhccccchhhhhhhHH
Q 041515 460 EKKLAAVASRSLNVDKLQADVD 481 (762)
Q Consensus 460 e~qi~~~~~k~~nle~i~~D~~ 481 (762)
..+|+...+....++...+.++
T Consensus 87 ~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 87 KAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766665544444444444
No 285
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.47 E-value=1.6e+02 Score=37.54 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041515 401 LKETRELQLESNSIQERLHRTYA 423 (762)
Q Consensus 401 l~dtr~lqkein~~~~~l~Rtf~ 423 (762)
......-|+++..+-.+++|...
T Consensus 538 ~~~~~~s~~d~s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 538 RRSLEESQDDLSSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 33444445555555555555443
No 286
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.33 E-value=46 Score=39.56 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSK 362 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~ 362 (762)
+.-+.++...++.......+|...-++.+..+.+=..+|.+....-..+ -.+-.+++.++.++..+..+++.++...++
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~-~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK-VRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555443322222222111111111 113346666677788888888888888888
Q ss_pred HHHHHhc
Q 041515 363 LSADLEK 369 (762)
Q Consensus 363 L~~~~~~ 369 (762)
|+.+++.
T Consensus 500 L~~~l~~ 506 (652)
T COG2433 500 LERKLAE 506 (652)
T ss_pred HHHHHHH
Confidence 8777763
No 287
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=70.27 E-value=86 Score=35.77 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=32.1
Q ss_pred HHHHHHHHHH-HhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 377 RSYIERIKEI-TKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAV 424 (762)
Q Consensus 377 ~~Yt~RI~Ei-v~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v 424 (762)
+.+.++..|. +++..||+++-+|.+..-++-=.-|..-.+.|-=||-+
T Consensus 338 Q~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~v 386 (575)
T KOG4403|consen 338 QKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHV 386 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeee
Confidence 3466777776 67888888888888888877555555555554445544
No 288
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=70.04 E-value=51 Score=37.40 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=96.6
Q ss_pred HhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhcC
Q 041515 296 KKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRK-----REDEYSKLSADLEKQ 370 (762)
Q Consensus 296 ~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~-----k~e~~~~L~~~~~~~ 370 (762)
+......|..-|.-|+..|...+..|.+ +.+|+++.+-+++.+.+.+|+-..|-+. -++++.+|...-
T Consensus 256 s~hevkal~~~~k~hksqls~al~~lsd----rak~a~e~l~~lr~m~~~iq~n~~ef~a~l~~q~d~lid~l~~rk--- 328 (699)
T KOG4367|consen 256 SSHEVKALGAMWKLHKSQLSQALNGLSD----RAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRK--- 328 (699)
T ss_pred cchhhhhHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH---
Confidence 4556889999999999999998877776 4567777888899999988876665432 355555554332
Q ss_pred CCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccch-HHHHHHHHHHh
Q 041515 371 PKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQS-FEQVSEKILAT 449 (762)
Q Consensus 371 ~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~-~~~l~~~i~~t 449 (762)
-.+..-+.||-+.--||+ +.+|-.-++||..|=..++=-|=---.-|++ |.||..
T Consensus 329 -------------~qll~~v~~e~e~k~kv~------r~qi~~ct~kl~qtt~lme~cle~ike~dps~~lqis~----- 384 (699)
T KOG4367|consen 329 -------------AQLLARVNKEHEHKLKVV------RDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISD----- 384 (699)
T ss_pred -------------HHHHHHhhhhhhhHHHHH------HHHhhheeeeeeehhhHHHHHHHHhccCCCcceeehhh-----
Confidence 234455666766655555 4589999999988877665333211122553 677654
Q ss_pred hHHHHHHHHHHHHHHHHhccc
Q 041515 450 DRVRREIAEYEKKLAAVASRS 470 (762)
Q Consensus 450 g~~~rei~~le~qi~~~~~k~ 470 (762)
++.|.+..+|+|-..+....
T Consensus 385 -ali~r~~~~e~~w~k~~~tp 404 (699)
T KOG4367|consen 385 -ALIRRVHLTEDQWGKGTLTP 404 (699)
T ss_pred -HHHHHhhhhHHhhcccccCC
Confidence 56677888999887665533
No 289
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.92 E-value=1.2e+02 Score=37.86 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=9.4
Q ss_pred HHHHHhhHHHHHHHHHHHhhHHHH
Q 041515 292 QVGAKKHNLVELELQWDALKESLE 315 (762)
Q Consensus 292 ~~~~~~~~l~~L~~qWe~~r~pl~ 315 (762)
.++.+++.+.+...++++.=..|.
T Consensus 498 ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 498 IIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444443333333
No 290
>PRK11519 tyrosine kinase; Provisional
Probab=69.55 E-value=72 Score=39.21 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhhhhcccCcHHHHHHHHHH
Q 041515 242 NRDESLMEAVTAKTSELCDPEEEYQLLKAA 271 (762)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~e~e~~~~~~~~~ 271 (762)
...+.+.+++...+.++++.|++++..++.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666777777777766654
No 291
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.46 E-value=3.2e+02 Score=34.74 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYS 361 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~ 361 (762)
-.++-..|+.-++...+.+..|.+.=++.+.. .+.+|+- .++..+|+-++++.+-+ +-++.++.|.
T Consensus 186 lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kd-VE~~rer-----------~~~~~~Ie~l~~k~~~v--~y~~~~~ey~ 251 (1072)
T KOG0979|consen 186 LREDEKSLEDKLTTKTEKLNRLEDEIDKLEKD-VERVRER-----------ERKKSKIELLEKKKKWV--EYKKHDREYN 251 (1072)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHH-----------HHHHHHHHHHHHhcccc--chHhhhHHHH
Confidence 45555666666666666666665554443322 2222222 22344555444433221 1222333333
Q ss_pred HHHHHHhcCCCccChHH--HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCcc
Q 041515 362 KLSADLEKQPKVASRRS--YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDD---MIFREAKKD 436 (762)
Q Consensus 362 ~L~~~~~~~~k~~~R~~--Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~de---lif~~akkd 436 (762)
+....++++-++. |.- =.+-|.+-.++++++ +.+--++....+.++|....++.-.|...++ .+..--++.
T Consensus 252 ~~k~~~~r~k~~~-r~l~k~~~pi~~~~eeLe~~---~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~l 327 (1072)
T KOG0979|consen 252 AYKQAKDRAKKEL-RKLEKEIKPIEDKKEELESE---KKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKL 327 (1072)
T ss_pred HHHHHHHHHHHHH-HHHHHhhhhhhhhhhhHHhH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222211 000 012233333334442 2333455566777777777777666665333 233222222
Q ss_pred ch-HHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhhhhhhhccCCCchhHH
Q 041515 437 QS-FEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQQFHRDGRALEE 503 (762)
Q Consensus 437 ~~-~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~~~~s~~g~~~~~~~~ 503 (762)
++ -.+--..-.+.+..+..|.+++..+... .+.++...-.+++.++--...+....+.+...+
T Consensus 328 e~lk~~~~~rq~~i~~~~k~i~~~q~el~~~----~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id 391 (1072)
T KOG0979|consen 328 ESLKKAAEKRQKRIEKAKKMILDAQAELQET----EDPENPVEEDQEIMKEVLQKKSSKLRDSRQEID 391 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----CCccccchhHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 22 1233334445555566666666554422 334444444444444433333333333333333
No 292
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=69.39 E-value=33 Score=38.18 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhh-HHHHHHHHHHH-------hcccccHHHHHHHHHHHHhhheee
Q 041515 593 FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAV-TPTIVLAEFIL-------FSKTISYKKVLALAIVSVGVAVAT 664 (762)
Q Consensus 593 ~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas-~P~~vll~~l~-------lgek~s~~~~lsLlli~~GV~la~ 664 (762)
+...+..|++..++-...-.+..|+.+|+-+-+---+ ..+-.++--++ +...-.....++++++++|+++.+
T Consensus 73 l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g 152 (344)
T PF06379_consen 73 LFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICG 152 (344)
T ss_pred HHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHh
Confidence 3345557777766666667788998887755443111 11112222222 223345578899999999999876
Q ss_pred ecC-----------cccc-HHHHHHHHHHHHHHHHHHHHHHH
Q 041515 665 VTD-----------LEFN-IFGAIIAVAWIIPSAINKILWSN 694 (762)
Q Consensus 665 ~~d-----------~~fs-~~G~ilalls~l~~Al~~V~~kk 694 (762)
.-. .+|| ..|.++++++.+++|..++-...
T Consensus 153 ~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a 194 (344)
T PF06379_consen 153 KAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA 194 (344)
T ss_pred HHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 521 1355 47999999999999999886543
No 293
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=68.68 E-value=2.1e+02 Score=33.04 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHhhhhhcccCcHHHHHHHHHHHHHhc-CC-CCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 041515 249 EAVTAKTSELCDPEEEYQLLKAAAEMAF-DD-SHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK 317 (762)
Q Consensus 249 ~~~~~~~~~~~e~e~~~~~~~~~~e~l~-d~-~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~ 317 (762)
++++..+.++.+-|.+.+..+....+.. +. ..-.+.+...++..+.....+.....+.|...+..+...
T Consensus 202 ~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~ 272 (458)
T COG3206 202 ERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLG 272 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444444555555555555555444444 32 122277788888888888888888888887766655443
No 294
>PF14772 NYD-SP28: Sperm tail
Probab=68.47 E-value=31 Score=31.48 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKE 312 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~ 312 (762)
..-.++|+..-..+..+...++.+|...-.
T Consensus 20 ~~~~~kl~~E~~~s~~~~~~I~~~W~~i~~ 49 (104)
T PF14772_consen 20 QERREKLEEEEKESRANFEKINERWREILR 49 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888888999999999999987543
No 295
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=68.37 E-value=1.9e+02 Score=31.84 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhccc-cchhhhhhhHHHHHHHhhhhh
Q 041515 451 RVRREIAEYEKKLAAVASRS-LNVDKLQADVDVIMKENEFLE 491 (762)
Q Consensus 451 ~~~rei~~le~qi~~~~~k~-~nle~i~~D~~~i~~en~~~~ 491 (762)
.+..|+.-|-.|+..-.... .+......|.+.|+.||..|+
T Consensus 233 ~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLq 274 (310)
T PF09755_consen 233 SLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQ 274 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777766666 788899999999999998664
No 296
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=67.92 E-value=1.5e+02 Score=30.51 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhHHHH---HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041515 286 LEQLDEQVGAKKHNLVELELQWDALKESLE---EKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSK 362 (762)
Q Consensus 286 ~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~---~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~ 362 (762)
|+.+...-+.....|.++..+=...+.||. .+..+|+..+..-+.+ -..++.++..++.+..+++.-+..++-
T Consensus 36 i~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd----K~~L~~~k~rl~~~ek~l~~Lk~e~ev 111 (201)
T PF13851_consen 36 IAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD----KQSLQNLKARLKELEKELKDLKWEHEV 111 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555556666663 3344444444332222 224455555666666666666666666
Q ss_pred HHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccch-HHH
Q 041515 363 LSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQS-FEQ 441 (762)
Q Consensus 363 L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~-~~~ 441 (762)
|...++++-++ |...-+|.-..|--+ .|+.+-. .--|++-+..+++.++..-+-+.+.+-. +.=||. ...
T Consensus 112 L~qr~~kle~E--rdeL~~kf~~~i~ev-qQk~~~k-----n~lLEkKl~~l~~~lE~keaqL~evl~~-~nldp~~~~~ 182 (201)
T PF13851_consen 112 LEQRFEKLEQE--RDELYRKFESAIQEV-QQKTGLK-----NLLLEKKLQALSEQLEKKEAQLNEVLAA-ANLDPAALSQ 182 (201)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 66666655442 333333333333222 2444443 3347788899999999999999888754 444554 444
Q ss_pred HHHHHHHh
Q 041515 442 VSEKILAT 449 (762)
Q Consensus 442 l~~~i~~t 449 (762)
+...|++.
T Consensus 183 v~~~l~~~ 190 (201)
T PF13851_consen 183 VSKKLEDV 190 (201)
T ss_pred HHHHHHHH
Confidence 44444443
No 297
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=67.79 E-value=1.8e+02 Score=31.21 Aligned_cols=120 Identities=23% Similarity=0.291 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHH---HHHHHHHHHHhhc-----------hHHHHHHHHHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLE---EKKRSLEESLYAN-----------ELEAQAKLLKLREVELERQS 348 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~---~~~~~l~~~~~~~-----------~~e~~~k~~~ik~~~~~~~~ 348 (762)
-..+.++++.++.+.+-=..+...|+.++..+. .-..+|...+-.. ..+.+..+.++++|+.+.+.
T Consensus 83 ~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~ 162 (296)
T PF13949_consen 83 RKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREE 162 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888888888888888877651 1122333322211 12223456666777777777
Q ss_pred HHHHHHhh--HHHHHHHHHHHhcCCCccChHH-------HHHHHHHHHhhhhhhHHhHHHHHH
Q 041515 349 VLSEIRKR--EDEYSKLSADLEKQPKVASRRS-------YIERIKEITKNSRKVDTDIERILK 402 (762)
Q Consensus 349 ~~~e~~~k--~e~~~~L~~~~~~~~k~~~R~~-------Yt~RI~Eiv~nirKQ~~eI~Kil~ 402 (762)
+..+++.+ .+...++...+.+.+....-.. |-.-+-.|-.|+.+|.+=|..|-.
T Consensus 163 ~~~~lk~~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~ 225 (296)
T PF13949_consen 163 LLEQLKEKLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQE 225 (296)
T ss_dssp HHHHHHH-----HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666653 4444555555555433211111 444455555566666555544443
No 298
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=67.67 E-value=1.8e+02 Score=33.87 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHH
Q 041515 300 LVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSY 379 (762)
Q Consensus 300 l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Y 379 (762)
+..+...|+.|+..+..-..++...+. +..+.-..+.+.+|....++..++...+-...=..+
T Consensus 350 ~~~~~~lwd~h~~~l~~~e~~l~~~l~-----------------~~r~~~~~~~q~~E~~Ld~~~d~lRq~s~ee~L~~~ 412 (473)
T PF14643_consen 350 FQEAAQLWDEHRKKLSKQEEELEKRLE-----------------QCREKHDQENQEKEAKLDIALDRLRQASSEEKLKEH 412 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 445566667776666655555544322 233334455555666666666666666665555566
Q ss_pred HHHHHHHHhhhhhh----HHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 041515 380 IERIKEITKNSRKV----DTDIERILK-ETRELQLESNSIQERLHRTYAVV 425 (762)
Q Consensus 380 t~RI~Eiv~nirKQ----~~eI~Kil~-dtr~lqkein~~~~~l~Rtf~v~ 425 (762)
..+.++...+|++- -.+..+|.. =--.+.++.++.+..|-+.|-|.
T Consensus 413 l~~~~~~Ld~Ie~~Y~~fh~~~~~~~~~yP~~i~~e~~~Y~~~l~~~f~v~ 463 (473)
T PF14643_consen 413 LEKALDLLDQIEEEYEDFHKKQTAIVMEYPEMILKELESYSESLCQFFGVR 463 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 66666666655543 333333332 34567889999999999988664
No 299
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=67.41 E-value=1.7e+02 Score=34.46 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHH
Q 041515 266 QLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKL-REVEL 344 (762)
Q Consensus 266 ~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~i-k~~~~ 344 (762)
+-....++++.+..+-.+.+++.|...+.....++..|.....-.+..|-.++.+++.+..+.+.+.-.++... +++..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH---HHHHHHHHHhhhhhhHHhHHHHHHHHHHH-----HHHHHHHHH
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS---YIERIKEITKNSRKVDTDIERILKETREL-----QLESNSIQE 416 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~---Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~l-----qkein~~~~ 416 (762)
.++++.+.+..--..++.+......+.-+.+=.. --.|++||-.+ ++|+..+++++--+ .+-|+.++|
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~v----RqELa~lLssvQ~~~e~~~~rkiaeiqg 488 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAV----RQELATLLSSVQLLKEDNPGRKIAEIQG 488 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCChhhhHHHHHH
Q ss_pred HHH
Q 041515 417 RLH 419 (762)
Q Consensus 417 ~l~ 419 (762)
+|.
T Consensus 489 ~l~ 491 (531)
T PF15450_consen 489 KLA 491 (531)
T ss_pred HHH
No 300
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=67.22 E-value=2.7e+02 Score=33.03 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhccc------cchhhhhhhHH
Q 041515 438 SFEQVSEKILATD--RVRREIAEYEKKLAAVASRS------LNVDKLQADVD 481 (762)
Q Consensus 438 ~~~~l~~~i~~tg--~~~rei~~le~qi~~~~~k~------~nle~i~~D~~ 481 (762)
.-.+|++.+++-- ...+-+++.|++...+..+. .-.++...|+-
T Consensus 149 ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr~a~~~~ 200 (514)
T TIGR03319 149 AKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGDHV 200 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 3445555554322 22333555555555544443 33555555554
No 301
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=66.79 E-value=88 Score=28.00 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCc--c-----------ChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 359 EYSKLSADLEKQPKV--A-----------SRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 359 ~~~~L~~~~~~~~k~--~-----------~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
.+.--..+++.+|.+ + ++..+... +.+.+++=+.+|.++-...+.++++++.+.+++.
T Consensus 30 ~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~---L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 30 ELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEE---LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888776 1 22223333 3333333444555555566666666666666554
No 302
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.62 E-value=90 Score=35.86 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHH
Q 041515 452 VRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKE 486 (762)
Q Consensus 452 ~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~e 486 (762)
+.-++|||=-.|++.+ ++.+|-++|++.
T Consensus 440 LqEQlrDlmf~le~qq-------klk~dt~eIqeg 467 (493)
T KOG0804|consen 440 LQEQLRDLMFFLEAQQ-------KLKSDTDEIQEG 467 (493)
T ss_pred HHHHHHhHheehhhhh-------hhhcchhhhcCc
Confidence 4556788877777543 233555555554
No 303
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=66.40 E-value=4.1e+02 Score=34.87 Aligned_cols=89 Identities=15% Similarity=0.270 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh------hchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLY------ANELEAQAKLLKLREVELERQSVLSEIRK 355 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~------~~~~e~~~k~~~ik~~~~~~~~~~~e~~~ 355 (762)
+.-.+..++........++.++.++-|.-+...++..+....... .........+.+++.++.++.++.+++..
T Consensus 817 ~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~ 896 (1294)
T KOG0962|consen 817 GIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITR 896 (1294)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466777777777777777888888887777776666554443322 11122222344445555555555555555
Q ss_pred hHHHHHHHHHHHhcC
Q 041515 356 REDEYSKLSADLEKQ 370 (762)
Q Consensus 356 k~e~~~~L~~~~~~~ 370 (762)
.....+.+...+...
T Consensus 897 ~~s~~~e~~~~~~~~ 911 (1294)
T KOG0962|consen 897 LDSKVKELLERIQPL 911 (1294)
T ss_pred HHHHHHhhHhhhcch
Confidence 544444444444433
No 304
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=66.27 E-value=1.3e+02 Score=31.96 Aligned_cols=124 Identities=11% Similarity=0.021 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HcC-CCCC--CCCCCccchhHHHHHHHHHH
Q 041515 529 VVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFK-AFS-IIPV--SPPAITTPFSSLFALGVVMS 604 (762)
Q Consensus 529 ~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~-~~~-~~~~--~~~~~~~~~~~l~plgl~~~ 604 (762)
++++++..++|..-.+++.+++...+ .|+.+.-+|+.+..++..+.. ... ..+. ..+.....+..++ +-+..+
T Consensus 116 ~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~-~i~~~a 192 (244)
T PF04142_consen 116 LLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWI-VIFLQA 192 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHH-HHHHHH
Confidence 44556666666666667777777644 466677777665555544332 111 1111 1110111111222 222344
Q ss_pred HHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHH
Q 041515 605 FATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAI 655 (762)
Q Consensus 605 l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLll 655 (762)
++-.+-.+.++|.+-=.-...-+.++.+++++++++|+.+++....++..+
T Consensus 193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 444445667888876444444444556668889999999999988776543
No 305
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=65.94 E-value=1e+02 Score=35.44 Aligned_cols=114 Identities=16% Similarity=0.265 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHH---HHHHHHHHHHHHHHhh---HHHHHHHHHHHhcCCC
Q 041515 299 NLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLR---EVELERQSVLSEIRKR---EDEYSKLSADLEKQPK 372 (762)
Q Consensus 299 ~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik---~~~~~~~~~~~e~~~k---~e~~~~L~~~~~~~~k 372 (762)
.+.++=..|=++|.....+-.+..-+ +.+.+++.++ .+-.+++.+.+-++.. .+-.+.|.+++..
T Consensus 304 ~~~eIL~~f~~~R~~~~~kR~~~~l~------kl~~~l~il~gl~~~~~~idfIi~vI~~s~~~~~~k~~L~~~L~~--- 374 (426)
T PF00521_consen 304 SLKEILKEFYEFRLEYYQKRKQYLLE------KLEERLHILEGLIKALNKIDFIIEVIRGSIDKNKAKKDLIEELSE--- 374 (426)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHHHHHHHHHHHHCH---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHhccccchHHHHHHHhhchH---
Confidence 46667778999999888774443321 1111222221 1113444444444433 4444555555443
Q ss_pred ccChHHHHHHHHHH-HhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 373 VASRRSYIERIKEI-TKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFRE 432 (762)
Q Consensus 373 ~~~R~~Yt~RI~Ei-v~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~ 432 (762)
...+-|+++ +.++ -+++++|+.+|.+++++|++.+...+.. +++++-+|
T Consensus 375 -----~q~~yLL~m~L~~L--T~~e~~kL~~e~~~l~~ei~~l~~~~~~----~~~l~~~d 424 (426)
T PF00521_consen 375 -----EQADYLLSMPLRRL--TKEEIEKLQKEIKELEKEIEELEKILPK----IKDLWKKD 424 (426)
T ss_dssp -----HHHHHHHTSBGGGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHH
T ss_pred -----HHHHHHHhchHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 333444444 2222 3589999999999999999999999888 45554443
No 306
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=65.85 E-value=3e+02 Score=33.13 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh-hchHHHH
Q 041515 287 EQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLY-ANELEAQ 333 (762)
Q Consensus 287 ~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~-~~~~e~~ 333 (762)
.=|.++|++-.+||.+|.---|.||..|-.....|.+++- ....|+|
T Consensus 128 svLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETq 175 (861)
T KOG1899|consen 128 SVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQ 175 (861)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHH
Confidence 3455555566666666666666666666555555555433 3344544
No 307
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.84 E-value=3.6e+02 Score=33.97 Aligned_cols=240 Identities=17% Similarity=0.215 Sum_probs=115.8
Q ss_pred hhhhhHHHHHHHHHhhhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 041515 238 DNLQNRDESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK 317 (762)
Q Consensus 238 ~~l~~~~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~ 317 (762)
.+|+.++..|.|+++..+.+-.|=...+. |+-. ---.+++|++.....+++...|+.+-...|.+..+-
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR~EDk~Kl~------Elek-----mkiqleqlqEfkSkim~qqa~Lqrel~raR~e~kea 295 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKRAEDKAKLK------ELEK-----MKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEA 295 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHH------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777787777777643322222111111 1111 122345566666666666666666666666554332
Q ss_pred ---HHHHHHHHhhc---------hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcc-ChHHH-----
Q 041515 318 ---KRSLEESLYAN---------ELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVA-SRRSY----- 379 (762)
Q Consensus 318 ---~~~l~~~~~~~---------~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~-~R~~Y----- 379 (762)
..++++++... .+|-- -++...++.+...+.+.+..-+-..+-|+.|.++-..+. +-++|
T Consensus 296 qe~ke~~k~emad~ad~iEmaTldKEmA--EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkql 373 (1243)
T KOG0971|consen 296 QEAKERYKEEMADTADAIEMATLDKEMA--EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQL 373 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHH
Confidence 22233332221 11100 013344455666666666666666777888888887765 55555
Q ss_pred ---HHHHHHHHhhhh----hhHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-----------------HHHHhh
Q 041515 380 ---IERIKEITKNSR----KVDTDIERILKETRELQLESNS---IQERLHRTYAVVD-----------------DMIFRE 432 (762)
Q Consensus 380 ---t~RI~Eiv~nir----KQ~~eI~Kil~dtr~lqkein~---~~~~l~Rtf~v~d-----------------elif~~ 432 (762)
..|..|-+=-+| --|.|+.|-.++.-....|++- +.++|.|--...+ +|+-+-
T Consensus 374 EqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qL 453 (1243)
T KOG0971|consen 374 EQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQL 453 (1243)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 455555543333 2344555555555544444443 3344444333322 222222
Q ss_pred cCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc-----cchhhhhhhHHHHHHHhhhh
Q 041515 433 AKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRS-----LNVDKLQADVDVIMKENEFL 490 (762)
Q Consensus 433 akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~-----~nle~i~~D~~~i~~en~~~ 490 (762)
+.+.--.++=|..+++|=.=.-+.+++.+|+..-+... ..+|+..+-.+++.++.++-
T Consensus 454 tdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aa 516 (1243)
T KOG0971|consen 454 TDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAA 516 (1243)
T ss_pred HhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222222223334444333444455555554333322 55777777777777765533
No 308
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=65.52 E-value=1.4e+02 Score=29.14 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
.+|..+..+++.+..++..-++.+......++..
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555555566666666555555555555555443
No 309
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.26 E-value=1.2e+02 Score=28.29 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 376 RRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRT 421 (762)
Q Consensus 376 R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rt 421 (762)
|..=.+|.-+=.+....=..+|.+.-.+...|+.++..+..+|.+.
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555667777777777777777777766654
No 310
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=64.88 E-value=3.4e+02 Score=33.44 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=33.3
Q ss_pred hHHHHHHHHH------HhhHHHHHHHHHHHHHHHHhccc--c----chhhhhhhHHHHHHHhhhh
Q 041515 438 SFEQVSEKIL------ATDRVRREIAEYEKKLAAVASRS--L----NVDKLQADVDVIMKENEFL 490 (762)
Q Consensus 438 ~~~~l~~~i~------~tg~~~rei~~le~qi~~~~~k~--~----nle~i~~D~~~i~~en~~~ 490 (762)
.|.++-..|+ -.....+++.+++.+++....++ . +|..+...++.|...-..+
T Consensus 277 a~~~la~ai~~~~~~~~~~~~~~~~~~l~~sl~~l~~~~~~~~~~~~l~~l~~nl~~i~~~l~~~ 341 (701)
T TIGR01667 277 ACQVLARDILLRQPYYHRLRTERALEKQIAALEKIRQNQAPDDLLGQLGYLLDNLQSIDWQLARI 341 (701)
T ss_pred HHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777777776 33357788888888888877655 2 3444444565555544433
No 311
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.82 E-value=2.7e+02 Score=34.29 Aligned_cols=63 Identities=29% Similarity=0.300 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQE 416 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~ 416 (762)
++..+..|+...-...+.++-.+|...| ..-|+.|. +|--++||.|.-+=||.||..+-.+-.
T Consensus 495 e~~rik~ev~eal~~~k~~q~kLe~sek-------EN~iL~it--lrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 495 ETTRIKIEVEEALVNVKSLQFKLEASEK-------ENQILGIT--LRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHh-------hhhHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444455555554444 23455554 566688999999999999988766543
No 312
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=64.35 E-value=2.2 Score=45.63 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHhcccc-cHHHHHHHHHHHHhhheeeecCc--cccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q 041515 635 LAEFILFSKTI-SYKKVLALAIVSVGVAVATVTDL--EFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKT 710 (762)
Q Consensus 635 ll~~l~lgek~-s~~~~lsLlli~~GV~la~~~d~--~fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~ 710 (762)
++-.++|+++. -..-.++++++++-..++..-.+ +.-+.|+++.++.++..-.-|+|.- +++++.-+-|+++.+.
T Consensus 66 IiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~GAs~WtiLaFc 143 (381)
T PF05297_consen 66 IIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYMW-LLRELGASFWTILAFC 143 (381)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHH
Confidence 33445666554 33333444444444433333222 3346788888777777666667743 6677888888877654
No 313
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=64.13 E-value=1.6e+02 Score=29.40 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 343 ELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTY 422 (762)
Q Consensus 343 ~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf 422 (762)
+-+-+...+.|..+.+...+|...+.+--. .-+.|-.+...+......-+.+|...-.....+++++......-++.-
T Consensus 48 kien~~l~~kIeERn~eL~~Lk~~~~~~v~--~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 48 KIENQQLNEKIEERNKELLKLKKKIGKTVQ--ILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666666666655542211 123466777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhcCc-cchHH-HHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 041515 423 AVVDDMIFREAKK-DQSFE-QVSEKILATDRVRREIAEYEKKLAAVAS 468 (762)
Q Consensus 423 ~v~delif~~akk-d~~~~-~l~~~i~~tg~~~rei~~le~qi~~~~~ 468 (762)
.-..++-.+..-. .|... ....++.+......+|..|+.+++..+.
T Consensus 126 ~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 126 KQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666663 56766 5888999999999999999999987765
No 314
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=64.03 E-value=2.2 Score=52.06 Aligned_cols=93 Identities=14% Similarity=0.213 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcc-ChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 041515 329 ELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVA-SRRSYIERIKEITKNSRKVDTDIERILKETREL 407 (762)
Q Consensus 329 ~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~-~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~l 407 (762)
...++.|++++..++.+++.+.++.+.--+....|+.++++.+..- .=-.|.+.|.++-.-.......+++...|.+.|
T Consensus 317 ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L 396 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQL 396 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888999999888888877778888888888765521 112388888888877777666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 041515 408 QLESNSIQERLHRT 421 (762)
Q Consensus 408 qkein~~~~~l~Rt 421 (762)
+.++..+...-+|-
T Consensus 397 ~ek~~~l~~eke~l 410 (713)
T PF05622_consen 397 EEKLEALEEEKERL 410 (713)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555444443
No 315
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=63.96 E-value=3.8e+02 Score=33.62 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=87.9
Q ss_pred HHHhhhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 041515 249 EAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYAN 328 (762)
Q Consensus 249 ~~~~~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~ 328 (762)
+++.+.+.++++-+.++.-+.++++- -+.-..-++.|+..+.+....+..+...|+.+ |..++.+.|++++...
T Consensus 188 ~klkq~~~ei~e~eke~a~yh~lLe~----r~~~~~rl~~l~~elr~~~~~i~~~~~~v~l~--~~lqE~k~Leqel~~~ 261 (984)
T COG4717 188 EKLKQERNEIDEAEKEYATYHKLLES----RRAEHARLAELRSELRADRDHIRALRDAVELW--PRLQEWKQLEQELTRR 261 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhccc
Confidence 33334444455554444444443332 22357778888888888999999999999876 4566666888877632
Q ss_pred hHHHH---H-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHH-HHHHHhhhhhhHHhHHHHHHH
Q 041515 329 ELEAQ---A-KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIER-IKEITKNSRKVDTDIERILKE 403 (762)
Q Consensus 329 ~~e~~---~-k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~R-I~Eiv~nirKQ~~eI~Kil~d 403 (762)
..|.- + =+.+++ ...+.++.++..+.-|..+++.+|+..++..=.++ .+.....+.-|+.+|.+.-.+
T Consensus 262 ~~e~~~fP~DGvlrlE-------k~~ahL~~~ea~i~~~~vrlae~~d~~~~LiP~ke~vl~~~~~l~q~~s~i~~~~~E 334 (984)
T COG4717 262 REELATFPRDGVLRLE-------KREAHLQKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKASAFE 334 (984)
T ss_pred hhhhccCCchhHHHHH-------HHHHhhhhhhhhhHHHHHHHHhhhHHHHhccchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 11100 0 011222 23345555555555555566666655555554444 122222334455555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 041515 404 TRELQLESNSIQERLHRTYAVVDDMIFREAKKDQ 437 (762)
Q Consensus 404 tr~lqkein~~~~~l~Rtf~v~delif~~akkd~ 437 (762)
--+.-+.|.... .=+-...++.+++.-++|.
T Consensus 335 ~te~~~~i~~~~---R~k~~~~~~~~~~er~~~~ 365 (984)
T COG4717 335 LTETLAGIEADL---RDKEEAAGNGFEAERVHDL 365 (984)
T ss_pred HHHHHHhHHHHH---HHHHHHhchhHHHHhhhhH
Confidence 333333332222 1122233444555555544
No 316
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=63.91 E-value=33 Score=29.38 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH-HHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK-KRSLEES 324 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~-~~~l~~~ 324 (762)
..|++|||..|+.+-+++.+-..-.+.+- .|..+ .+.++++
T Consensus 7 sDNVEkLQ~mi~nTieN~~eAee~l~~~~-el~~~~~~~i~eK 48 (70)
T TIGR03090 7 SDNVEKLQQMIDNTIENMEEANEYIEAHA-ELSEEEKQRIEEK 48 (70)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 67999999999999998877655555454 33322 3335554
No 317
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=63.79 E-value=46 Score=32.67 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc--cChHHHHHHHHHHHhh
Q 041515 312 ESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV--ASRRSYIERIKEITKN 389 (762)
Q Consensus 312 ~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~--~~R~~Yt~RI~Eiv~n 389 (762)
.|++++...+.+++..... .+++.+.+.++ .-++|..++.+...- -.+..|+++|.++-+.
T Consensus 47 ~P~i~eI~~~~~eld~~~~-------------ee~e~L~~~L~----~g~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~ 109 (147)
T PF05659_consen 47 IPIIKEIDKLNVELDRPRQ-------------EEIERLKELLE----KGKELVEKCSKVRRWNLYKKPRYARKIEELEES 109 (147)
T ss_pred hhHHHHHHHHhhhcCCchh-------------HHHHHHHHHHH----HHHHHHHHhccccHHHHHhhHhHHHHHHHHHHH
Confidence 4666666666665553311 12322333333 334566666666652 2244599998888877
Q ss_pred hhhhHH-hHH-HHHHHHHHHHHHHHHHHHHHH
Q 041515 390 SRKVDT-DIE-RILKETRELQLESNSIQERLH 419 (762)
Q Consensus 390 irKQ~~-eI~-Kil~dtr~lqkein~~~~~l~ 419 (762)
|++==. ++. -++.|.+++.-+.+....+|+
T Consensus 110 l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~ 141 (147)
T PF05659_consen 110 LRRFIQVDLQLHQLRDIKELLAKMSEMNTKLD 141 (147)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775221 111 123355555544444444444
No 318
>COG5293 Predicted ATPase [General function prediction only]
Probab=63.57 E-value=2.9e+02 Score=32.11 Aligned_cols=183 Identities=15% Similarity=0.193 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcCCCCC---hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH-----------------------HH
Q 041515 266 QLLKAAAEMAFDDSHP---TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK-----------------------KR 319 (762)
Q Consensus 266 ~~~~~~~e~l~d~~~~---~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~-----------------------~~ 319 (762)
..+++++.-...+++. .++-+.+++..|.+..++-...+.+|+-+...+.++ ++
T Consensus 241 ~~k~~tln~f~~~a~~y~e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk 320 (591)
T COG5293 241 NKKQATLNTFDFHAQDYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKK 320 (591)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHH
Confidence 3334444444323333 377888999999999999999999999998887654 11
Q ss_pred HHHHH--HhhchHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHH
Q 041515 320 SLEES--LYANELEAQA--KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDT 395 (762)
Q Consensus 320 ~l~~~--~~~~~~e~~~--k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~ 395 (762)
.+++- -.+..-|.++ --++|++++..++++..+++.+.+....+..-+++ |... +
T Consensus 321 ~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~------~g~~---------------e 379 (591)
T COG5293 321 DFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKN------RGVF---------------E 379 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCcH---------------H
Confidence 22110 1111111111 23466666667777766666665555555444432 1111 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc-cchh
Q 041515 396 DIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRS-LNVD 474 (762)
Q Consensus 396 eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~-~nle 474 (762)
+|+-+.++.+.+.-|++-+.-+.+ ...+.=..-.-.|+++-|+-+++.-+.++-+.+ +=.+
T Consensus 380 ~y~~l~ee~~~~~~elae~~~rie------------------~l~k~~~~~~~i~~lkhe~l~~~~r~y~e~q~q~~~~~ 441 (591)
T COG5293 380 KYQTLCEEIIALRGELAELEYRIE------------------PLRKLHALDQYIGTLKHECLDLEERIYTEVQQQCSLFA 441 (591)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhh------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333322211 011111222345788888888999888888877 5456
Q ss_pred hhhhhHHHHHHHh
Q 041515 475 KLQADVDVIMKEN 487 (762)
Q Consensus 475 ~i~~D~~~i~~en 487 (762)
++..=++.+..+.
T Consensus 442 ~~~~lF~~~~r~~ 454 (591)
T COG5293 442 SIGRLFKEMIREV 454 (591)
T ss_pred HHHHHHHHHHHHH
Confidence 6665565555554
No 319
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=62.67 E-value=1.4e+02 Score=28.31 Aligned_cols=83 Identities=24% Similarity=0.335 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLS 364 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~ 364 (762)
.|..+++.+.+...++..|.++=+..+..+..=..+..+. .....+...--.++++++.+...+-+-+=.|.|...+|+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4455555555555566666555444444443322222211 111111111112445555555555556666677777776
Q ss_pred HHHh
Q 041515 365 ADLE 368 (762)
Q Consensus 365 ~~~~ 368 (762)
.+++
T Consensus 103 ~Dv~ 106 (120)
T PF12325_consen 103 ADVQ 106 (120)
T ss_pred HHHH
Confidence 6665
No 320
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=62.40 E-value=1.7e+02 Score=30.81 Aligned_cols=32 Identities=13% Similarity=0.324 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCch--hHHHHHH
Q 041515 533 TFNFVVSVGIILTNKLVMGQVGFNF--PIFLTVI 564 (762)
Q Consensus 533 ~~~~v~Sv~ii~~NK~vl~~~gF~~--Pl~Lt~~ 564 (762)
..|...++...+..++++...+.|+ |++++..
T Consensus 5 ~~~l~lTl~~y~~~~~l~~r~~~~~lnPvl~~~~ 38 (226)
T TIGR00659 5 IVSLFLTLLVFFGAKKLYQRFKRPYLNPLLLTPL 38 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHH
Confidence 3456667777788888887644432 6666544
No 321
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=61.83 E-value=2e+02 Score=29.71 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=12.4
Q ss_pred cChHHHHHHHHHHHhhhhhh
Q 041515 374 ASRRSYIERIKEITKNSRKV 393 (762)
Q Consensus 374 ~~R~~Yt~RI~Eiv~nirKQ 393 (762)
.-|-+|..||.|+=..+..|
T Consensus 132 ~e~~~YesRI~dLE~~L~~~ 151 (196)
T PF15272_consen 132 RERIAYESRIADLERQLNSR 151 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566777777765555433
No 322
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=61.82 E-value=89 Score=29.04 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=52.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 041515 290 DEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEK 369 (762)
Q Consensus 290 ~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~ 369 (762)
...++...++..++++|.|.+=...-.. | +...+|. -+++++.++.+|++.|+++..+....+.
T Consensus 3 rt~vEq~~~~FlD~aRq~e~~FlqKr~~---L----S~~kpe~--------~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~- 66 (106)
T PF11594_consen 3 RTYVEQLIQSFLDVARQMEAFFLQKRFE---L----SAYKPEQ--------VLKEEINELKEELQRKEQLLQKHYEKID- 66 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HhcCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3456777888888888887764332222 2 2333442 2444666666888888888877655443
Q ss_pred CCCccChHHHHHHHHHHHhhhhhhHHhH
Q 041515 370 QPKVASRRSYIERIKEITKNSRKVDTDI 397 (762)
Q Consensus 370 ~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI 397 (762)
|.+.++.=+.|..|-.+++
T Consensus 67 ---------~w~~lL~d~~~~~k~~~ev 85 (106)
T PF11594_consen 67 ---------YWEKLLSDAQNQHKVPDEV 85 (106)
T ss_pred ---------HHHHHHHHHHhhccCchhc
Confidence 6666676667766666664
No 323
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=61.25 E-value=2.7e+02 Score=34.02 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=5.6
Q ss_pred hHHHHHHHHHH
Q 041515 450 DRVRREIAEYE 460 (762)
Q Consensus 450 g~~~rei~~le 460 (762)
|.+..|||..+
T Consensus 374 dain~eirliq 384 (916)
T KOG0249|consen 374 DAINKEIRLIQ 384 (916)
T ss_pred CcccchhhHhH
Confidence 45555555544
No 324
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=61.13 E-value=4.2e+02 Score=33.23 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHH-H--HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLE-E--KKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDE 359 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~-~--~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~ 359 (762)
+...+.|++...+.+..+.+..++|+..-..+= . .-.+.-........+.++++..+.++..+...+.++...-++-
T Consensus 570 eaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~ 649 (984)
T COG4717 570 EAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEER 649 (984)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777788888888888888888766551 1 0111111112223444556667778888888888888888888
Q ss_pred HHHHHHHHhcCCCccChHHHHHHHH-HHHhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515 360 YSKLSADLEKQPKVASRRSYIERIK-EITKNSRKVDTDIERILKETRELQLESN 412 (762)
Q Consensus 360 ~~~L~~~~~~~~k~~~R~~Yt~RI~-Eiv~nirKQ~~eI~Kil~dtr~lqkein 412 (762)
...|-..++...-+.+=..-+.|-+ +-=....|++-++++...=|+++-.+++
T Consensus 650 v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ 703 (984)
T COG4717 650 VEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELR 703 (984)
T ss_pred HHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Confidence 8888888876666655555555433 2223344444444444444444433333
No 325
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=61.09 E-value=1.1e+02 Score=34.46 Aligned_cols=40 Identities=8% Similarity=0.247 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhccccc--HHHHHHHHHHHHhhheeeecCc
Q 041515 629 VTPTIVLAEFILFSKTIS--YKKVLALAIVSVGVAVATVTDL 668 (762)
Q Consensus 629 s~P~~vll~~l~lgek~s--~~~~lsLlli~~GV~la~~~d~ 668 (762)
.+|+.+++.++.++++.+ ....++++++.+++.+....+.
T Consensus 168 ~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll~~~v~~G~~~p~ 209 (376)
T PF02554_consen 168 FIPIAILFGLLVYKRGGNLGPATIIGVVLLLLAVWLGMYFPI 209 (376)
T ss_pred HHHHHHHHhHhheecCCchHhhHHHHHHHHHHHHHhhhhccc
Confidence 577777778888877655 4456777777777766655453
No 326
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.95 E-value=1.2e+02 Score=31.45 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=24.1
Q ss_pred hhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHH
Q 041515 254 KTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVE 302 (762)
Q Consensus 254 ~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~ 302 (762)
.+..+.++|.++...+.-+.-+.+ .-+...++++..++++.+.+.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~---~~~~~~~~l~~~~~~~~~~~~~ 136 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDN---TWNQRTAEMQQKVAQSDSVING 136 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777766643333322 1334455555555555444444
No 327
>PRK11281 hypothetical protein; Provisional
Probab=60.92 E-value=4.9e+02 Score=33.92 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 361 SKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFRE 432 (762)
Q Consensus 361 ~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~ 432 (762)
+-|.+...++|+..+- +++.+-..|.|-=|=|+|...+++.-.=.+++++.=.+
T Consensus 340 ~~l~~q~~~LP~~~~~------------------~~l~~~iAdlrl~~f~~~q~~~~l~~~~~y~~~l~~~~ 393 (1113)
T PRK11281 340 RILYQQQQALPSADLI------------------EGLADRIADLRLEQFEINQQRDALFQPDAYIDKLEAGH 393 (1113)
T ss_pred HHHHHHHHhCCCCccc------------------chHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHhcc
Confidence 3466666777775422 22444445666555666666666666666677665433
No 328
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=60.68 E-value=2.1e+02 Score=29.54 Aligned_cols=23 Identities=9% Similarity=0.424 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKE 403 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~d 403 (762)
+++-.+-..+.+.++++.-++.=
T Consensus 150 kKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 150 KKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666553
No 329
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=60.58 E-value=2.7e+02 Score=30.89 Aligned_cols=136 Identities=17% Similarity=0.236 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHh----------hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 287 EQLDEQVGAKKHNLVELELQWDAL----------KESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKR 356 (762)
Q Consensus 287 ~kL~~~~~~~~~~l~~L~~qWe~~----------r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k 356 (762)
++|+...++.+.+..++..+|... ...|..-..+.++... .--.+++++++++.++..+++.-
T Consensus 33 EqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk-------~L~~Ev~~Lrqkl~E~qGD~KlL 105 (319)
T PF09789_consen 33 EQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNK-------KLKEEVEELRQKLNEAQGDIKLL 105 (319)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhchHHHH
Confidence 355555555555666665555432 2333333333333321 12236778888888888887666
Q ss_pred HHHHHHHHHHHhcCCCc---cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 357 EDEYSKLSADLEKQPKV---ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMI 429 (762)
Q Consensus 357 ~e~~~~L~~~~~~~~k~---~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~deli 429 (762)
.+...+.+.....++-. ..|..++.-+=.+-+.++-=+-|+.-++.|.-++-.|-.....|++|-=...--++
T Consensus 106 R~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L 181 (319)
T PF09789_consen 106 REKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYIL 181 (319)
T ss_pred HHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555554444444221 34555666655555555555566777777777788888888888888755554444
No 330
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=60.23 E-value=40 Score=39.58 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=14.4
Q ss_pred cChHHHHHHHHHHHhhhh
Q 041515 374 ASRRSYIERIKEITKNSR 391 (762)
Q Consensus 374 ~~R~~Yt~RI~Eiv~nir 391 (762)
+.|++|-.|.+|+-.-||
T Consensus 406 MeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 406 MERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 458889999999877666
No 331
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.19 E-value=2.8e+02 Score=30.87 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV 373 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~ 373 (762)
-|-+++.+.+++--|++.--++-.-.+ +++|..
T Consensus 202 yI~~LEsKVqDLm~EirnLLQle~~~~---e~~p~~ 234 (401)
T PF06785_consen 202 YIGKLESKVQDLMYEIRNLLQLESDMK---ESMPST 234 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh---hcCCCC
Confidence 445555666666666665555554333 455554
No 332
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.16 E-value=50 Score=38.28 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=9.9
Q ss_pred cccHHHHHHH--HHHHHhhhee
Q 041515 644 TISYKKVLAL--AIVSVGVAVA 663 (762)
Q Consensus 644 k~s~~~~lsL--lli~~GV~la 663 (762)
+-+-..|++- ++...|+..+
T Consensus 363 ~SNA~~YL~t~~lltaaga~~a 384 (472)
T TIGR03752 363 RTNAPQYLGTQALITAAGAGAA 384 (472)
T ss_pred ccCHHHHHHHHHHHHhhhhhhh
Confidence 3455666665 4444444433
No 333
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=60.05 E-value=2.1e+02 Score=29.41 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=36.4
Q ss_pred HHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 041515 384 KEITKNSRKVDTDIERILKETRELQLESNSI---QERLHRTYAVVDDMIF 430 (762)
Q Consensus 384 ~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~---~~~l~Rtf~v~delif 430 (762)
--++..|..=.++=.|++.++.-+++.++.+ ...|.|.--+.+.++.
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~ 147 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLIC 147 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999998888 3456666555555553
No 334
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=59.73 E-value=1.8e+02 Score=29.65 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041515 400 ILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 400 il~dtr~lqkein~~~~~l~R 420 (762)
--+++..|+++.+.+...+++
T Consensus 168 ~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334445566666666655543
No 335
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.72 E-value=2.8e+02 Score=30.64 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAV 424 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v 424 (762)
...++..++.....-+.-+.+++. +++| |+.....++.+.-..
T Consensus 140 L~eKlK~l~eQye~rE~~~~~~~k-~keL--E~Ql~~AKl~q~~~~ 182 (309)
T PF09728_consen 140 LREKLKSLIEQYELREEHFEKLLK-QKEL--EVQLAEAKLEQQQEE 182 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HHHH--HHHHHHHHHHHHHHH
Confidence 456666677766666666666653 3333 344444555554443
No 336
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=59.71 E-value=11 Score=40.39 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHH
Q 041515 593 FSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSV 658 (762)
Q Consensus 593 ~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~ 658 (762)
+.-+..+|++..+.-.+-..+++---.+-..+.+ ++-.++ ++...+|||+.+++..|.+.++++.
T Consensus 253 r~l~~~lGvfgfigQIllTm~lQiErAGpvaim~-~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvs 318 (346)
T KOG4510|consen 253 RWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMT-YTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVS 318 (346)
T ss_pred eEEEEEehhhhhHHHHHHHHHhhhhccCCeehhh-HHHHHHHHHHHHHHhcCCChHHHhhceeeeeh
Confidence 3345667887777778888899876666666677 344444 6778999999999999876655543
No 337
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=59.70 E-value=2e+02 Score=29.10 Aligned_cols=114 Identities=12% Similarity=0.201 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041515 284 FYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAK-LLKLREVELERQSVLSEIRKREDEYSK 362 (762)
Q Consensus 284 ~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k-~~~ik~~~~~~~~~~~e~~~k~e~~~~ 362 (762)
..+..++-.+-...+.+.+-..+...|-..|.+-. . .+.+.+ ...|..++.++.....+++.--....+
T Consensus 66 ~w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~i-------d---~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~ 135 (184)
T PF05791_consen 66 EWLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAI-------D---QKDKEDLKEIIEDLQDQIQKNQDKVQALINELND 135 (184)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------C---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666666666555555443 1 111111 112333333333333333333333333
Q ss_pred HHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515 363 LSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN 412 (762)
Q Consensus 363 L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein 412 (762)
++..+. ..-+....+.-++.+-+..+.++|.+.-.+...++.+|+
T Consensus 136 f~~~l~-----~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 136 FKDKLQ-----KDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHH-----HHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 333222 223446666677777777777877666666665555554
No 338
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=59.62 E-value=81 Score=32.47 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLS 364 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~ 364 (762)
+.|+.++++...++.=++.|++..++|+
T Consensus 167 ~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666666666666666666666654
No 339
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.24 E-value=2.1e+02 Score=34.82 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHH---HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC--
Q 041515 298 HNLVELELQWDALKESLEEKKRS---LEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK-- 372 (762)
Q Consensus 298 ~~l~~L~~qWe~~r~pl~~~~~~---l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k-- 372 (762)
+.+.+|+.=|++...+--+.+.- |++++.. -+.+++++. ....+++..+|..-+.....|-..+...+.
T Consensus 18 ~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~---~y~~kve~a---~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~ 91 (660)
T KOG4302|consen 18 NLLNELQKIWDEIGESETERDKKLLRLEQECLE---IYKRKVEEA---SESKARLLQEIAVIEAELNDLCSALGEPSIIG 91 (660)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence 34556888999988887766543 4444432 223344333 334444444444444444444444443332
Q ss_pred ------ccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 373 ------VASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRT 421 (762)
Q Consensus 373 ------~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rt 421 (762)
..+=..-..+|..-+.-+|||+++=. .+.++++.||..+.+-+.=.
T Consensus 92 ~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~---~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 92 EISDKIEGTLKEQLESLKPYLEGLRKQKDERR---AEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred ccccccCccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCC
Confidence 12334466778888888888887764 45566777888877777655
No 340
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=59.19 E-value=81 Score=34.47 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhhhHHh----HHHHHHHHHHHHHHHHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTD----IERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~e----I~Kil~dtr~lqkein~~~~~l~ 419 (762)
|..|+--.|.|==|-..| +..-|++.|-||-|++++.+||-
T Consensus 88 ~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLA 132 (351)
T PF07058_consen 88 SANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLA 132 (351)
T ss_pred hhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788886666555 45568899999999999999983
No 341
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=58.98 E-value=2.1e+02 Score=35.61 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHhhHHHH----HHHHHHHhhHHHHHHHHHHHHHHhh
Q 041515 283 EFYLEQLDEQVGAKKHNLVE----LELQWDALKESLEEKKRSLEESLYA 327 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~----L~~qWe~~r~pl~~~~~~l~~~~~~ 327 (762)
-+.+.+|-..-+.-++++.+ -..|||+.|..|+.++.++...+..
T Consensus 55 kec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~ 103 (769)
T PF05911_consen 55 KECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAE 103 (769)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666654 4789999999999999888877653
No 342
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=58.78 E-value=78 Score=28.86 Aligned_cols=74 Identities=22% Similarity=0.388 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQ 415 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~ 415 (762)
+++|-++.++.+.+..++..-....+++.+++. ..+++.+|......+.+.+.+++..+.
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~--------------------~~~~~~~~~~~l~~e~~~lk~~i~~le 87 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIG--------------------KLKKAGEDAEELKAEVKELKEEIKELE 87 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHCHTTCCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------------------HHhhCcccHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444444444433 333333555555555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 041515 416 ERLHRTYAVVDDMI 429 (762)
Q Consensus 416 ~~l~Rtf~v~deli 429 (762)
.++.....-+++++
T Consensus 88 ~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 88 EQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444443
No 343
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.77 E-value=1.2e+02 Score=30.92 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHH
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQ 408 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lq 408 (762)
+.....+++..-++..++|+++++...+..+ .+|-++...+..-++.+++.-..+-.|+
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp-----~~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDP-----EKIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444555555566666666666663333211 3444444445555555555444444433
No 344
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=58.71 E-value=2.2e+02 Score=32.93 Aligned_cols=85 Identities=11% Similarity=0.131 Sum_probs=44.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHH
Q 041515 555 FNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIV 634 (762)
Q Consensus 555 F~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~v 634 (762)
||+|.++..+|.++-++...++.++...... . -+.-+.+++.+.++-++.+.. -..|+-.. ..+|+++
T Consensus 56 ~Ps~~tLli~Qal~la~~~~pl~~lar~~~~----~--~~~a~~~~~~ylL~p~~~~~~----~~dFH~~~--~avPll~ 123 (449)
T PF09852_consen 56 FPSPLTLLIVQALLLALGAIPLYRLARRRLL----S--RRLALLIALAYLLSPGLQGAN----LFDFHPVA--FAVPLLL 123 (449)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C--cHHHHHHHHHHHHhHHHHhhh----hCCCcHHH--HHHHHHH
Confidence 7899999999999877766655432211110 0 112344566665555444332 23344443 3468775
Q ss_pred HHHHHHhcccccHHHHH
Q 041515 635 LAEFILFSKTISYKKVL 651 (762)
Q Consensus 635 ll~~l~lgek~s~~~~l 651 (762)
+..+.+.+++.-.....
T Consensus 124 ~~~~~~~~~r~~~~~~~ 140 (449)
T PF09852_consen 124 WALYALERRRWRLFILW 140 (449)
T ss_pred HHHHHHHhCcHHHHHHH
Confidence 55555555554444333
No 345
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=58.70 E-value=2.7e+02 Score=30.19 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHH
Q 041515 300 LVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSY 379 (762)
Q Consensus 300 l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Y 379 (762)
...|..+-+.+..-|.....+-. +.--.-+.++++++.++......+++-.+..+...+. -
T Consensus 37 ~ekLs~~ldvVe~~L~~~I~~~s-------~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~------------~ 97 (291)
T PF10475_consen 37 QEKLSHYLDVVEKKLSREISEKS-------DSFFQAMSSVQELQDELEEALVICKNLRRNLKSADEN------------L 97 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------h
Confidence 34444444444444444433333 3333346677777777777777766555544444333 3
Q ss_pred HHHHHHHHhhhhhhHH--hHHHHHHHHHHHHHHHHHHHHHH
Q 041515 380 IERIKEITKNSRKVDT--DIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 380 t~RI~Eiv~nirKQ~~--eI~Kil~dtr~lqkein~~~~~l 418 (762)
++.-++|+.+-||.+. ++...|...+.++.--..+++-|
T Consensus 98 ~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll 138 (291)
T PF10475_consen 98 TKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELL 138 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888888887765 56666666666665555554443
No 346
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=58.33 E-value=63 Score=27.95 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQW 307 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qW 307 (762)
..|++|||..|+.+-+++.+-..-.
T Consensus 8 sDNVEkLQ~mi~nTieNi~eAee~l 32 (73)
T PRK03830 8 SDNVEKLQEMIQNTIENIEEAEETI 32 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999988876654433
No 347
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=58.28 E-value=2.9e+02 Score=33.41 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHH----------HHHHHhhhhhhHHhHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIER----------IKEITKNSRKVDTDIERILKETREL 407 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~R----------I~Eiv~nirKQ~~eI~Kil~dtr~l 407 (762)
+|..+-.+++.+..+++..+..+.++. +.-.+| |..+++. +-...+.-++-.+.+.++..+.+.+
T Consensus 272 ~id~Lv~~lr~~~~rIr~~Er~i~~~~-~~~~m~----R~~Fi~~f~gnEt~~~w~~~~~~~~~~~a~~l~~~~~~I~~l 346 (619)
T PRK05658 272 QIDELVEQLRDINKRVRGQERELLRLV-ERLKMP----RKDFLKLFQGNELDITWLEKEIASGKPWSEFLVRVYDEIKKL 346 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCC----HHHHHHHccCCcCCHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 455556667777777777766666532 333333 3333322 2222333344556666777777777
Q ss_pred HHHHHHHHHHH
Q 041515 408 QLESNSIQERL 418 (762)
Q Consensus 408 qkein~~~~~l 418 (762)
|+.++.+....
T Consensus 347 q~~L~~ie~~~ 357 (619)
T PRK05658 347 QQELEAIEEET 357 (619)
T ss_pred HHHHHHHHHHh
Confidence 77777766544
No 348
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=58.27 E-value=5.2e+02 Score=33.40 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWDALKESL 314 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl 314 (762)
.++.++.........+..+..+|......+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (1047)
T PRK10246 559 QLQRDESEAQSLRQEEQALTQQWQAVCASL 588 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555666666777777666655
No 349
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=58.19 E-value=2.3e+02 Score=29.18 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041515 404 TRELQLESNSIQERLHR 420 (762)
Q Consensus 404 tr~lqkein~~~~~l~R 420 (762)
.-.|+.++..+..++..
T Consensus 120 ReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQE 136 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 350
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=57.83 E-value=63 Score=27.96 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=34.8
Q ss_pred HHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 041515 349 VLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKET 404 (762)
Q Consensus 349 ~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dt 404 (762)
+...++.|++.+.+|..+-+++.+.. ..-..+|+.+|++..|-++-+.+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e------l~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE------LKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999887743 233456677777666665544443
No 351
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.61 E-value=1.2e+02 Score=28.97 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQ 415 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~ 415 (762)
+.+|+-.+.+++++-++++.++-+....++..++.+.
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444444444444444433
No 352
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=57.36 E-value=3.1e+02 Score=30.41 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHH----HHHHHHHh-----------hchHHHHHHHHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKK----RSLEESLY-----------ANELEAQAKLLKLREVELERQ 347 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~----~~l~~~~~-----------~~~~e~~~k~~~ik~~~~~~~ 347 (762)
-..+.++.+.++++.+-=..+...|+.|+. .++-+ +++...+- .....-+..+.++..|+.+.+
T Consensus 132 ~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~-~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~ 210 (342)
T cd08915 132 YEKVTKLRGYLEQASNSDNEVLQCYESIDP-NLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERE 210 (342)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777787777888888888744 33332 22222111 111223334556666666666
Q ss_pred HHHHHHHhh---HHHHHHHHHHHhc
Q 041515 348 SVLSEIRKR---EDEYSKLSADLEK 369 (762)
Q Consensus 348 ~~~~e~~~k---~e~~~~L~~~~~~ 369 (762)
.++++++.+ ++...+|...+.+
T Consensus 211 ~~~~~lk~~~~~ddI~~~ll~~~~~ 235 (342)
T cd08915 211 RFISELEIKSRNNDILPKLITEYKK 235 (342)
T ss_pred HHHHHHHHHhhhcCCcHHHHHHhhc
Confidence 666666554 2333345455443
No 353
>PRK00106 hypothetical protein; Provisional
Probab=57.34 E-value=4e+02 Score=31.77 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHHHHHhccc------cchhhhhhhHH
Q 041515 439 FEQVSEKILATD--RVRREIAEYEKKLAAVASRS------LNVDKLQADVD 481 (762)
Q Consensus 439 ~~~l~~~i~~tg--~~~rei~~le~qi~~~~~k~------~nle~i~~D~~ 481 (762)
-.+|++.+++-- ...+-+++.|++...+..+. .-.++...|+-
T Consensus 171 k~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~~~~ 221 (535)
T PRK00106 171 REIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAGEYV 221 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 445555444322 22333666666666655544 33556666653
No 354
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=57.03 E-value=1.8e+02 Score=31.50 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=18.2
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYA 423 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~ 423 (762)
++++|+-.|+.|.++ |+..|.-.=.-++|.+.|+|++...
T Consensus 70 q~l~e~c~~lek~rq---Klshdlq~Ke~qv~~lEgQl~s~Kk 109 (307)
T PF10481_consen 70 QSLMESCENLEKTRQ---KLSHDLQVKESQVNFLEGQLNSCKK 109 (307)
T ss_pred hhHHHHHHHHHHHHH---HhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 345555555555443 3333433334444555555544433
No 355
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.02 E-value=2.9e+02 Score=32.70 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=17.4
Q ss_pred HhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515 296 KKHNLVELELQWDALKESLEEKKRSLEESLY 326 (762)
Q Consensus 296 ~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~ 326 (762)
.++++..|-+.--.+..++....|+-+.++.
T Consensus 635 L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq 665 (741)
T KOG4460|consen 635 LMNRMKKLLHSFHSELPVLSDAERDFKKELQ 665 (741)
T ss_pred HHHHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 3344555555555566666666666666553
No 356
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=56.56 E-value=3.1e+02 Score=30.31 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc--------CCC-------ccChH-HHHHHHHHHHhhhhhhH
Q 041515 331 EAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEK--------QPK-------VASRR-SYIERIKEITKNSRKVD 394 (762)
Q Consensus 331 e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~--------~~k-------~~~R~-~Yt~RI~Eiv~nirKQ~ 394 (762)
+...++.+++..-.+....+..++.+-+.+......+.. +|. .+.+. ...+.+++=+..+++|+
T Consensus 130 ~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR 209 (342)
T cd08915 130 ELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKER 209 (342)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777888888888887777665555533 230 11111 14555666666666666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhc--CccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 041515 395 TDIERILKETRELQLESNSIQERLHRTYA-----VVDDMIFREA--KKDQSFEQVSEKILATDRVRREIAEYEKKLAAVA 467 (762)
Q Consensus 395 ~eI~Kil~dtr~lqkein~~~~~l~Rtf~-----v~delif~~a--kkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~ 467 (762)
+.+.+-|.+- ..-..++.+|--.+. .. +-||..- |.|+.-.+|-+.+.....+..+|++...+.....
T Consensus 210 ~~~~~~lk~~----~~~ddI~~~ll~~~~~~~~~~~-e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~ 284 (342)
T cd08915 210 ERFISELEIK----SRNNDILPKLITEYKKNGTTEF-EDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVK 284 (342)
T ss_pred HHHHHHHHHH----hhhcCCcHHHHHHhhccccchh-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665444331 111222233322221 12 3355443 4477777888888888888888888888775544
No 357
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=56.02 E-value=45 Score=37.06 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=43.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHH
Q 041515 555 FNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIV 634 (762)
Q Consensus 555 F~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~v 634 (762)
++|.++-..++++..|..+.+..+-....... ++ ++.|.. .=+-++++++.+.|..-.-+.|+.++...+-|.+
T Consensus 145 ~~~r~~d~~~~f~lvwyY~tLtiRE~IL~~NG--S~--Ik~WW~--~HHy~s~~~s~v~Ltwp~~~~~~~fr~~fl~f~~ 218 (330)
T PF07851_consen 145 LNYRVLDQLFNFLLVWYYCTLTIRESILIVNG--SR--IKGWWV--FHHYISTFLSGVMLTWPDGEAYQKFRPQFLLFSL 218 (330)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhccCC--Cc--chHHHH--HHHHHHHHHHhccccCCCcHHHHHHHHHHHHHHH
Confidence 45688888999999888887765544333221 11 111110 0133455555666667677888888864444443
Q ss_pred H
Q 041515 635 L 635 (762)
Q Consensus 635 l 635 (762)
.
T Consensus 219 ~ 219 (330)
T PF07851_consen 219 Y 219 (330)
T ss_pred H
Confidence 3
No 358
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=55.92 E-value=3.1e+02 Score=30.07 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC-CccChH
Q 041515 299 NLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQP-KVASRR 377 (762)
Q Consensus 299 ~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~-k~~~R~ 377 (762)
.+.+-...|-.-|..+-.+.+++.++......+-...++++++++.+..++-..++..-..+.++.....-.. ...+..
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~ 110 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIK 110 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHH
Confidence 4445555677777788888888877666444444446667777777777777777766556666555544221 112222
Q ss_pred HHHHHHHHHHhhhhhhHH------hHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhcCccchHHHHHHH
Q 041515 378 SYIERIKEITKNSRKVDT------DIERILKETRELQLESNS------IQERLHRTYAVVDDMIFREAKKDQSFEQVSEK 445 (762)
Q Consensus 378 ~Yt~RI~Eiv~nirKQ~~------eI~Kil~dtr~lqkein~------~~~~l~Rtf~v~delif~~akkd~~~~~l~~~ 445 (762)
+--+.|-++. .+|.+ +=.++++.+..|+++++. ..+++..-++-+|++-- +.++.-+.|.+.
T Consensus 111 ~ler~i~~Le---~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~---~~~e~~eki~~l 184 (294)
T COG1340 111 SLEREIERLE---KKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKK---KAREIHEKIQEL 184 (294)
T ss_pred HHHHHHHHHH---HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 2222222221 12221 112344444445555544 44556666666666532 223333344444
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 041515 446 ILATDRVRREIAEYEKKLA 464 (762)
Q Consensus 446 i~~tg~~~rei~~le~qi~ 464 (762)
..+.+.+..++-.+=..+|
T Consensus 185 a~eaqe~he~m~k~~~~~D 203 (294)
T COG1340 185 ANEAQEYHEEMIKLFEEAD 203 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333333
No 359
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=55.66 E-value=4.1e+02 Score=31.37 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=20.8
Q ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHHH
Q 041515 548 LVMGQVGFNFPIFLTVIHYAVAWILLAIFK 577 (762)
Q Consensus 548 ~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~ 577 (762)
|+-..++++.-..++.+.++.+.+.-.+++
T Consensus 177 ~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 177 LLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444456677677788888888777766664
No 360
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=55.65 E-value=4.1e+02 Score=31.41 Aligned_cols=76 Identities=11% Similarity=0.002 Sum_probs=36.5
Q ss_pred chhHHHHHHHhhhHHHHHHHHHHH---hcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHHHHHHHHHH
Q 041515 617 NSVGFYQMSKIAVTPTIVLAEFIL---FSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWS 693 (762)
Q Consensus 617 vsVs~~qmlKsas~P~~vll~~l~---lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~Al~~V~~k 693 (762)
.+...|.++-+ ..-+-+++..++ ++++++...++.+..+..|++++..+-....+..++..+++.+++.+.++...
T Consensus 251 ~~a~~yGll~a-~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 251 GGASGYGLLLA-AFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred CcHHHHHHHHH-HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666654 233333333333 34677777666666666665554443222223333333444444444444433
No 361
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=55.64 E-value=3.4e+02 Score=30.47 Aligned_cols=136 Identities=12% Similarity=0.046 Sum_probs=68.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHc-C---CCCCCCCCCccchhHHHHHH
Q 041515 525 ICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAF-S---IIPVSPPAITTPFSSLFALG 600 (762)
Q Consensus 525 ~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~-~---~~~~~~~~~~~~~~~l~plg 600 (762)
+++. .+++..|.+|.---++..+++..-+ -++-+-=+|+-+-.++..+.... . ......+-....+..|+ +-
T Consensus 182 ~~G~-~avl~~c~~SgfAgvYfEkiLK~s~--~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~-vV 257 (345)
T KOG2234|consen 182 FLGL-VAVLVACFLSGFAGVYFEKILKGSN--VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWL-VV 257 (345)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHH-HH
Confidence 3444 4555555666655566677776522 35555555554444333322211 1 11000010111111222 22
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhheee
Q 041515 601 VVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVAT 664 (762)
Q Consensus 601 l~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la~ 664 (762)
+..+++-.+..+-++|.+-=+-...-+.++.++++.++++++-+++..-.+++.++++.+.+..
T Consensus 258 l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 258 LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 2333333444555677654343333333455566777888888888888888877777777765
No 362
>PRK10263 DNA translocase FtsK; Provisional
Probab=55.46 E-value=50 Score=42.85 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=5.9
Q ss_pred hHHHH-HHHHHHHhc
Q 041515 629 VTPTI-VLAEFILFS 642 (762)
Q Consensus 629 s~P~~-vll~~l~lg 642 (762)
.+|++ ++..++++.
T Consensus 85 LLP~LL~~~a~~l~R 99 (1355)
T PRK10263 85 TIPVIIVGGCWFAWR 99 (1355)
T ss_pred HHHHHHHHHHHHHHh
Confidence 34543 333444443
No 363
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.28 E-value=70 Score=30.71 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=41.2
Q ss_pred hhHHHHHHHhhhHHHH-H-HHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHH
Q 041515 618 SVGFYQMSKIAVTPTI-V-LAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWII 683 (762)
Q Consensus 618 sVs~~qmlKsas~P~~-v-ll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l 683 (762)
|+-...+-|- ..|++ . .=+++=|.-..+...+++++++.+|+.+++..-.-....|+++.+++.+
T Consensus 41 PlivW~~kK~-~sp~vD~qGKe~lNFqIs~ti~~ivs~vLil~g~~la~t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 41 PLIVWLLKKD-SSPFVDAQGKEALNFQISYTIYSIVSFVLILAGVFLAATDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHhc-cchhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 6667777773 56776 2 2344445555666667888899999987654444446677777644433
No 364
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=55.21 E-value=4.3 Score=42.97 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHH-HHHHHHHHhcccccHHHH----HHHHHHHHhhheeeecCc---
Q 041515 597 FALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPT-IVLAEFILFSKTISYKKV----LALAIVSVGVAVATVTDL--- 668 (762)
Q Consensus 597 ~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~-~vll~~l~lgek~s~~~~----lsLlli~~GV~la~~~d~--- 668 (762)
+.-|++.+++-....-|+++..||-..=+-+.+-.+ +.++..++|+|-.+.... ++++++++|+.+.++.|-
T Consensus 63 ~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk 142 (288)
T COG4975 63 FISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK 142 (288)
T ss_pred HHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc
Confidence 334555566666677788888776433332211111 246677788886655543 688999999999999773
Q ss_pred -----cccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 041515 669 -----EFNIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPW 724 (762)
Q Consensus 669 -----~fs~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~ 724 (762)
++.-.|+...+.|.+.+..|.++.+ ..+++.+...+-++.-+++.-+++...
T Consensus 143 ~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~----~f~v~g~saiLPqAiGMv~~ali~~~~ 199 (288)
T COG4975 143 EEENPSNLKKGIVILLISTLGYVGYVVLFQ----LFDVDGLSAILPQAIGMVIGALILGFF 199 (288)
T ss_pred cccChHhhhhheeeeeeeccceeeeEeeec----cccccchhhhhHHHHHHHHHHHHHhhc
Confidence 2235788888889999888888754 345788877776655444444444443
No 365
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=54.82 E-value=80 Score=35.85 Aligned_cols=144 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred cccCcHHHHHHHH--HHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHH
Q 041515 257 ELCDPEEEYQLLK--AAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQA 334 (762)
Q Consensus 257 ~~~e~e~~~~~~~--~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~ 334 (762)
+..|.|++..+.| +-++.+.++......++++|-. .+++|...-|.-...|.+++-..=+++.....-.+.
T Consensus 150 q~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRr-------e~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~ 222 (552)
T KOG2129|consen 150 QLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRR-------EAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQK 222 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHhcCCCccChHH--HHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 041515 335 KLLKLREVELERQSVL-------SEIRKREDEYSKLSADLEKQPKVASRRS--YIERIKEITKNSRKVDTDIERILKETR 405 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~-------~e~~~k~e~~~~L~~~~~~~~k~~~R~~--Yt~RI~Eiv~nirKQ~~eI~Kil~dtr 405 (762)
|+++=-......+.+. .+...-.-.+.+|+.|++++-++..|.. |+ +++..-..+-+
T Consensus 223 KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~--------------ek~~qy~~Ee~ 288 (552)
T KOG2129|consen 223 KLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQ--------------EKLMQYRAEEV 288 (552)
T ss_pred HhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHH
Q 041515 406 ELQLESNSIQERLHRT 421 (762)
Q Consensus 406 ~lqkein~~~~~l~Rt 421 (762)
..+.|..+++.+|.|+
T Consensus 289 ~~reen~rlQrkL~~e 304 (552)
T KOG2129|consen 289 DHREENERLQRKLINE 304 (552)
T ss_pred hHHHHHHHHHHHHHHH
No 366
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=54.78 E-value=2.6e+02 Score=28.74 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=6.2
Q ss_pred HHHHHHhccccc
Q 041515 635 LAEFILFSKTIS 646 (762)
Q Consensus 635 ll~~l~lgek~s 646 (762)
++.++++++|++
T Consensus 191 ~~~~~~lkkk~~ 202 (206)
T PF06570_consen 191 FALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHhC
Confidence 344555555554
No 367
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=54.67 E-value=4.9e+02 Score=31.99 Aligned_cols=206 Identities=18% Similarity=0.292 Sum_probs=109.8
Q ss_pred ChhHHHH----HHHHHHHHHhhHHHHHH-HHHHHhh-HHHHHHHH------HHHHHHhhchHHHHHHHHH-------HHH
Q 041515 281 PTEFYLE----QLDEQVGAKKHNLVELE-LQWDALK-ESLEEKKR------SLEESLYANELEAQAKLLK-------LRE 341 (762)
Q Consensus 281 ~~~~n~~----kL~~~~~~~~~~l~~L~-~qWe~~r-~pl~~~~~------~l~~~~~~~~~e~~~k~~~-------ik~ 341 (762)
.+++... |+...+++..+++..+. .+|.+-| ..+.+-.| ++.+++.......+.-+.+ ..+
T Consensus 386 ~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed 465 (698)
T KOG0978|consen 386 LLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED 465 (698)
T ss_pred CCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 55566677777766654 4666666 33333333 2222222222222211112 244
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc--cChHHHH---HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 041515 342 VELERQSVLSEIRKREDEYSKLSADLEKQPKV--ASRRSYI---ERIKEITKNSRKVDTDIERILKETRELQLESNSIQE 416 (762)
Q Consensus 342 ~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~--~~R~~Yt---~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~ 416 (762)
++..+..+.++++.+++.+-+|-.+-.++.+- .-|..|. .-|...-...+++...|-|.-+--+-+|...+.+..
T Consensus 466 ~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~ 545 (698)
T KOG0978|consen 466 MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIK 545 (698)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHH
Confidence 45556667777777777777776666655542 2222222 445555566667777777777777777777766665
Q ss_pred HHHHHHHHHHHHHHhhcCc-cchHH----HHHHHHHHhhHHHHHHHHHHHHHHHHhccc----cchhhhhhhHHHHHHHh
Q 041515 417 RLHRTYAVVDDMIFREAKK-DQSFE----QVSEKILATDRVRREIAEYEKKLAAVASRS----LNVDKLQADVDVIMKEN 487 (762)
Q Consensus 417 ~l~Rtf~v~delif~~akk-d~~~~----~l~~~i~~tg~~~rei~~le~qi~~~~~k~----~nle~i~~D~~~i~~en 487 (762)
.+ +++++.-|+.-+.+-. ....+ ++-+.....-.+.+.+.+++..++.+..|. .-++++..=+..+++++
T Consensus 546 el-~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 546 EL-TTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55 3455555554443322 11222 223333344456677777777787777764 33444444444444433
No 368
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=54.56 E-value=3.5e+02 Score=30.26 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH----HHHHHHHHhh------------chHHHHHHHHHHHHHHHHHH
Q 041515 284 FYLEQLDEQVGAKKHNLVELELQWDALKESLEEK----KRSLEESLYA------------NELEAQAKLLKLREVELERQ 347 (762)
Q Consensus 284 ~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~----~~~l~~~~~~------------~~~e~~~k~~~ik~~~~~~~ 347 (762)
..+.++.+.++++.+-=..+...|+.|+.- ++. .++|+..+-. ....-+..+.++..|+.+.+
T Consensus 134 ~~~~~~~~~L~~A~~sD~~v~~k~~~~~~~-l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~ 212 (353)
T cd09236 134 TQAAEYEGYLKQAGASDELVRRKLDEWEDL-IQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRR 212 (353)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889999999899999999999864 333 2334433221 11122223445555555666
Q ss_pred HHHHHHHhh
Q 041515 348 SVLSEIRKR 356 (762)
Q Consensus 348 ~~~~e~~~k 356 (762)
.+.++++.|
T Consensus 213 ~~~~~Lk~k 221 (353)
T cd09236 213 RKVERARTK 221 (353)
T ss_pred HHHHHHHHH
Confidence 666666444
No 369
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=54.54 E-value=2.2e+02 Score=27.82 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 041515 456 IAEYEKKL 463 (762)
Q Consensus 456 i~~le~qi 463 (762)
+.++...+
T Consensus 168 ~~~l~~~l 175 (202)
T PF01442_consen 168 AEELKETL 175 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 370
>PRK09793 methyl-accepting protein IV; Provisional
Probab=54.49 E-value=4.2e+02 Score=31.15 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH--H--------HHHHHHHHHHHHHHHhhcCccc
Q 041515 382 RIKEITKNSRKVDTDIERILKETRELQLESNSI--Q--------ERLHRTYAVVDDMIFREAKKDQ 437 (762)
Q Consensus 382 RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~--~--------~~l~Rtf~v~delif~~akkd~ 437 (762)
.+.+-+..|.++=++|.+|..-+..+=.|.|-+ . |.--|-|+|+=+=|-+-|.+..
T Consensus 342 ~~~~~~~~l~~~s~~I~~i~~~I~~IA~QTNLLALNAAIEAARAGE~GrGFAVVA~EVR~LAe~t~ 407 (533)
T PRK09793 342 TMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSA 407 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhhHHHHHHHHHHHH
Confidence 344445556666677888888888887777743 1 2234889999887887777644
No 371
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=54.20 E-value=2.4e+02 Score=28.29 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 041515 358 DEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERIL--KETRELQLESNSIQERLHRTYAVVDDMIFREAKK 435 (762)
Q Consensus 358 e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil--~dtr~lqkein~~~~~l~Rtf~v~delif~~akk 435 (762)
+.+.++..++++..++ +..+...+-+++.|.| .+-..|...||-.+++++--=+=++++.+.-+|.
T Consensus 44 d~itk~veeLe~~~~q------------~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks 111 (165)
T PF09602_consen 44 DWITKQVEELEKELKQ------------FKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQELLLSPSKS 111 (165)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Confidence 3466666666654432 2444444555555555 4555566666666666666666668888877776
No 372
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=54.13 E-value=6.4e+02 Score=33.18 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=13.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 041515 441 QVSEKILATDRVRREIAEYEKKLAAVAS 468 (762)
Q Consensus 441 ~l~~~i~~tg~~~rei~~le~qi~~~~~ 468 (762)
++.+....--.+++++.+++.++..+-.
T Consensus 1002 r~l~dnl~~~~l~~q~~e~~re~~~ld~ 1029 (1294)
T KOG0962|consen 1002 RNLKDNLTLRNLERKLKELERELSELDK 1029 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555554444
No 373
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=54.07 E-value=57 Score=36.74 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHH
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQL 409 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqk 409 (762)
..+++++.++...+..+-...+..+.-++.+|.=|.++|.+.|.+|--+ |+.++--=.|+.+.+.|.-.-+|
T Consensus 2 ~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~-v~~~~~Ki~elkr~lAd~v~~~k 73 (428)
T PF00846_consen 2 STLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSV-VSALQDKIAELKRQLADRVAAGK 73 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc
Confidence 3456666677777777766667777778889999999999999999654 45566555666666666544443
No 374
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=53.96 E-value=1.4e+02 Score=29.06 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 395 TDIERILKETRELQLESNSIQERLHRTYAV 424 (762)
Q Consensus 395 ~eI~Kil~dtr~lqkein~~~~~l~Rtf~v 424 (762)
+++.+++.|........+-+++.+...+..
T Consensus 104 ~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~ 133 (171)
T PF03357_consen 104 DKVEKLMDDFQEEMEDQDEISEALSDSMDQ 133 (171)
T ss_dssp CCHHHHHHHHHHHHHHHTS-----------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 467788888888877777778888777743
No 375
>COG4682 Predicted membrane protein [Function unknown]
Probab=53.73 E-value=53 Score=31.13 Aligned_cols=38 Identities=24% Similarity=0.140 Sum_probs=22.1
Q ss_pred HHHHHHHHhhheeee----cCccccHHHHHHHHHHHHHHHHH
Q 041515 651 LALAIVSVGVAVATV----TDLEFNIFGAIIAVAWIIPSAIN 688 (762)
Q Consensus 651 lsLlli~~GV~la~~----~d~~fs~~G~ilalls~l~~Al~ 688 (762)
+|....++|+++... .+.+.|=.||.++++=...++.+
T Consensus 15 va~~~lv~G~vvyLiGLWna~~qLnEKGYyfaVlvl~~F~a~ 56 (128)
T COG4682 15 VAWLALVVGAVVYLVGLWNACMQLNEKGYYFAVLVLGLFGAY 56 (128)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhccCceeehhHHHHhhHHH
Confidence 334444455544333 35677778998887755555544
No 376
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=53.65 E-value=3e+02 Score=33.00 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhcchhHHHHHHHhhhHHHH-HHHHHHHh-cc
Q 041515 603 MSFATGLANTSLKHNSVGFYQMSKIAVTPTI-VLAEFILF-SK 643 (762)
Q Consensus 603 ~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~-vll~~l~l-ge 643 (762)
-++.++.+.+++...|+...-++...-.|++ ..+..+|+ +|
T Consensus 60 p~i~~~ig~~~f~~~p~~liklfygve~pi~~i~l~~lflire 102 (952)
T TIGR02921 60 PAICIGIGGTCFLKNPTALIKLFYGVEAPIFFICLLRLFLIRE 102 (952)
T ss_pred HHHHhhhcchhhhcCcHHHHHHHHcccchHHHHHHHHHHHHHh
Confidence 4567788889999999998888876668865 34444444 54
No 377
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=53.42 E-value=24 Score=39.76 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l 418 (762)
-..||-|+=..|..-++.+..+-.....++|++..+.+++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl 181 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKL 181 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666665555443
No 378
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=53.34 E-value=3.3e+02 Score=29.52 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 041515 411 SNSIQERLHRTYA 423 (762)
Q Consensus 411 in~~~~~l~Rtf~ 423 (762)
...+.+-|+-+|-
T Consensus 174 l~~LgeFLeeHfP 186 (268)
T PF11802_consen 174 LSFLGEFLEEHFP 186 (268)
T ss_pred HHHHHHHHHhcCC
Confidence 3445555555555
No 379
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=53.16 E-value=5.1e+02 Score=31.68 Aligned_cols=233 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhh------hcccCcHHHHHHHHH-HHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHH
Q 041515 244 DESLMEAVTAKT------SELCDPEEEYQLLKA-AAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEE 316 (762)
Q Consensus 244 ~~~l~~~~~~~~------~~~~e~e~~~~~~~~-~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~ 316 (762)
++.|.+.+.... .+.+...++++.... +..+|.- .+.-+..|+..+.+....-.+-..|-++.+..|.+
T Consensus 407 leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~----~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~ 482 (786)
T PF05483_consen 407 LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQI----REKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQ 482 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred H---HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhh
Q 041515 317 K---KRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKV 393 (762)
Q Consensus 317 ~---~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ 393 (762)
+ +.+|-..+..-..|-.....+...+-.+++...+++...+..-.++.+..+++.....+- -.-.-.+-.-++++
T Consensus 483 EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~L--rneles~~eel~~k 560 (786)
T PF05483_consen 483 EKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQL--RNELESVKEELKQK 560 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccch---------------HHHHHHHHHHhhHHHHHHHH
Q 041515 394 DTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQS---------------FEQVSEKILATDRVRREIAE 458 (762)
Q Consensus 394 ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~---------------~~~l~~~i~~tg~~~rei~~ 458 (762)
.+|+..-+.+...-...+..--.+-+..+..+++.+..--|.=+. -+++..-..-.....-.|-.
T Consensus 561 ~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~ 640 (786)
T PF05483_consen 561 GEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNK 640 (786)
T ss_pred HHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhccc-cchhhhhhhHHH
Q 041515 459 YEKKLAAVASRS-LNVDKLQADVDV 482 (762)
Q Consensus 459 le~qi~~~~~k~-~nle~i~~D~~~ 482 (762)
|+..++...++. .-.+++..|+..
T Consensus 641 L~~E~e~~kk~~eE~~~~~~keie~ 665 (786)
T PF05483_consen 641 LQEELENLKKKHEEETDKYQKEIES 665 (786)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
No 380
>PTZ00121 MAEBL; Provisional
Probab=53.06 E-value=6.8e+02 Score=33.49 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhh
Q 041515 286 LEQLDEQVGAKKHNLVELELQWDALK 311 (762)
Q Consensus 286 ~~kL~~~~~~~~~~l~~L~~qWe~~r 311 (762)
+++|+..=+.-.+++..+..+||+-+
T Consensus 1635 ~Eelkk~eeE~kkk~Ea~kK~EEE~k 1660 (2084)
T PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENK 1660 (2084)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566666665444
No 381
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=52.97 E-value=1.5e+02 Score=28.48 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 376 RRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 376 R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
|..-++||=.+.+++.+|.+=..-|-+|.-+++.++..+.+.++
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44445666666666666665555555555555555555444433
No 382
>PTZ00121 MAEBL; Provisional
Probab=52.92 E-value=7.1e+02 Score=33.31 Aligned_cols=24 Identities=21% Similarity=0.172 Sum_probs=18.1
Q ss_pred HHHhhHHHHHHHHHHHhhHHHHHH
Q 041515 294 GAKKHNLVELELQWDALKESLEEK 317 (762)
Q Consensus 294 ~~~~~~l~~L~~qWe~~r~pl~~~ 317 (762)
+.-.+|+++|+.+||++....++.
T Consensus 1629 eeekKk~Eelkk~eeE~kkk~Ea~ 1652 (2084)
T PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEEL 1652 (2084)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344567889999999988877664
No 383
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=52.90 E-value=1.4e+02 Score=34.48 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
+...-+...++.++..|++.+...|+++...++
T Consensus 365 ~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~q 397 (458)
T COG3206 365 LSKLPKLQVQLRELEREAEAARSLYETLLQRYQ 397 (458)
T ss_pred HhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555555554444
No 384
>PRK10865 protein disaggregation chaperone; Provisional
Probab=52.88 E-value=1.9e+02 Score=36.44 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=36.6
Q ss_pred ccCcHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515 258 LCDPEEEYQLLKAAAEMAFDDS-HPTEFYLEQLDEQVGAKKHNLVELELQWDALKESL 314 (762)
Q Consensus 258 ~~e~e~~~~~~~~~~e~l~d~~-~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl 314 (762)
++.++..+..+++.++.+.... .....-+++++..++...+++..|..+|+..+.++
T Consensus 412 L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el 469 (857)
T PRK10865 412 LDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASL 469 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444443311 11233457888888899999999999999888766
No 385
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ. Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.
Probab=52.77 E-value=2e+02 Score=29.26 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcchhH
Q 041515 594 SSLFALGVVMSFATGLANTSLKHNSVG 620 (762)
Q Consensus 594 ~~l~plgl~~~l~i~l~N~SL~yvsVs 620 (762)
+++.-++++.++.++++...+-+.|.+
T Consensus 2 r~l~~~al~~Ala~vL~~i~~~~~P~~ 28 (183)
T TIGR02357 2 RLLIEIAIMAALAMVLSMIPLTMYPQG 28 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 345566777777777776655555543
No 386
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=52.42 E-value=2.3e+02 Score=32.51 Aligned_cols=64 Identities=14% Similarity=0.313 Sum_probs=40.5
Q ss_pred chhHHHHHHHhhhHHHH---HHHHHHHhcccccHHHHHHHHHHHHhhheeeecC-ccccHHHHHHHHH
Q 041515 617 NSVGFYQMSKIAVTPTI---VLAEFILFSKTISYKKVLALAIVSVGVAVATVTD-LEFNIFGAIIAVA 680 (762)
Q Consensus 617 vsVs~~qmlKsas~P~~---vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d-~~fs~~G~ilall 680 (762)
.++|+..++-+-..|-+ .+.-+++.+-.+..+.+++++++++|..++++.+ ....+.|++++=+
T Consensus 57 ~~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ 124 (402)
T PF02487_consen 57 KSVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASL 124 (402)
T ss_pred CcccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhh
Confidence 45555555554456743 2333444456778889999999999988887743 3445666665543
No 387
>PRK10869 recombination and repair protein; Provisional
Probab=52.30 E-value=4.8e+02 Score=31.16 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 351 SEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 351 ~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
++++.+-..+.+|+.+|..-+ .=|++--+.++++-++++..-.+...|++++..+..++.
T Consensus 299 ~~ie~Rl~~l~~L~rKyg~~~---------~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~ 358 (553)
T PRK10869 299 AELEQRLSKQISLARKHHVSP---------EELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQAL 358 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666655211 122333333333333444444455555555555555443
No 388
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=52.11 E-value=3.2e+02 Score=29.08 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 376 RRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTY 422 (762)
Q Consensus 376 R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf 422 (762)
...|+..|-.+..-.++...|-.+.-.+....|........+|....
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~ 130 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVM 130 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777888888888888888888887777777764433
No 389
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=51.58 E-value=1.9e+02 Score=26.21 Aligned_cols=51 Identities=10% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 378 SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDM 428 (762)
Q Consensus 378 ~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~del 428 (762)
.+..++.-+...+.|.++++.-+-.+.+.+.-|+..+...++++=.+++.+
T Consensus 28 ~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L 78 (96)
T PF08647_consen 28 ILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQL 78 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456777788888888888888888888888888888888888876666554
No 390
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=51.51 E-value=2.2e+02 Score=28.69 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 378 SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDD 427 (762)
Q Consensus 378 ~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~de 427 (762)
.|.+|..++|...+.+=+. ..-. |--.+|++|..+.+++.|+=.-++.
T Consensus 116 e~erRL~~mi~~~e~~l~~-~~~~-~~~~lq~ei~a~e~RL~RCr~Ai~~ 163 (173)
T PF07445_consen 116 EYERRLLAMIQEREQQLEQ-AQSF-EQQQLQQEILALEQRLQRCRQAIEK 163 (173)
T ss_pred HHHHHHHHHHHHHHHHHHh-CChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999874433221 1223 6778999999999999997554443
No 391
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=51.50 E-value=1.4e+02 Score=33.97 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=7.8
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 041515 308 DALKESLEEKKRSLEESL 325 (762)
Q Consensus 308 e~~r~pl~~~~~~l~~~~ 325 (762)
-.-+..+..+++.++..+
T Consensus 33 ~aq~~~~~a~~~ai~a~~ 50 (459)
T KOG0288|consen 33 SAQLVILRAESRAIKAKL 50 (459)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 392
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.41 E-value=2.3e+02 Score=27.21 Aligned_cols=77 Identities=10% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 041515 293 VGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEK 369 (762)
Q Consensus 293 ~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~ 369 (762)
|..-.+.|.++..--...|..|..++..+-.+++....=++.--+++-+++.++..+..++..=......|+.++..
T Consensus 45 ~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555554444443332211111112244444555555555555545555555544443
No 393
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=51.03 E-value=3.8e+02 Score=29.59 Aligned_cols=73 Identities=16% Similarity=0.367 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhhhhh-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHh
Q 041515 377 RSYIERIKEITKNSRKV-------DTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILAT 449 (762)
Q Consensus 377 ~~Yt~RI~Eiv~nirKQ-------~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~t 449 (762)
+.|+.+.-|+-.-+.|= +.||.|+-.-++.|.||......+-+.+=. .|++++++.
T Consensus 219 ~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~-----------------~l~~m~eer 281 (309)
T PF09728_consen 219 NLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNK-----------------ALIEMAEER 281 (309)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------------HHHHHHHHH
Confidence 46888887777766654 579999999999999998888777665544 566677776
Q ss_pred hHHHHHHHHHHHHHHHH
Q 041515 450 DRVRREIAEYEKKLAAV 466 (762)
Q Consensus 450 g~~~rei~~le~qi~~~ 466 (762)
.....++..+..|++.+
T Consensus 282 ~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 282 QKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666677777666643
No 394
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=50.45 E-value=2.9e+02 Score=28.06 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhc--ccccHHHHH-HHHHHHHhhhe
Q 041515 600 GVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFS--KTISYKKVL-ALAIVSVGVAV 662 (762)
Q Consensus 600 gl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lg--ek~s~~~~l-sLlli~~GV~l 662 (762)
=+.|+++.+..-+++.....-.+.-.- .++|....++.++-+ +|+++.+++ +.++..+|+-+
T Consensus 116 DlvfSlDSV~a~~~it~~~~iv~~g~i-~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig~~l 180 (183)
T PF03741_consen 116 DLVFSLDSVLAAVGITDDFFIVITGNI-ISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIGVKL 180 (183)
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777778777777644443333332 345555455555544 677777664 44555556544
No 395
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=50.32 E-value=2.3e+02 Score=26.97 Aligned_cols=127 Identities=17% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHH
Q 041515 321 LEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERI 400 (762)
Q Consensus 321 l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Ki 400 (762)
++.++..-..+.+....++.....+++.+.++++.-.+........|+ ......--. ++.+.+=+++....
T Consensus 1 ~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE--------~El~~Ha~~-~~~L~~lr~e~~~~ 71 (132)
T PF07926_consen 1 FESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE--------RELVKHAED-IKELQQLREELQEL 71 (132)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHHH-HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc----cchhhh
Q 041515 401 LKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRS----LNVDKL 476 (762)
Q Consensus 401 l~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~----~nle~i 476 (762)
-.++.+++.+.+.....|+..-.--.+ .-+.+..|+.+++..++.....| .+||.+
T Consensus 72 ~~~~~~l~~~~~~a~~~l~~~e~sw~~--------------------qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 72 QQEINELKAEAESAKAELEESEASWEE--------------------QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 396
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.86 E-value=3.7e+02 Score=29.11 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIK 384 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~ 384 (762)
+|++++.+|..+.+.|+.+.+.+++ +...|-.+..=+.|+.=|+
T Consensus 81 eik~l~~eI~~~~~~I~~r~~~l~~---raRAmq~nG~~t~Yidvil 124 (265)
T COG3883 81 EIKKLQKEIAELKENIVERQELLKK---RARAMQVNGTATSYIDVIL 124 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCChhHHHHHHH
Confidence 5567777888888888777665543 3333333333344554443
No 397
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=49.75 E-value=2.5e+02 Score=28.35 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHHHHHHHHHHHH
Q 041515 671 NIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSAIFISALLG 750 (762)
Q Consensus 671 s~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~~~i~lsgvlg 750 (762)
-+.|..++-++.++|..--..-+... .+.++.-.+.+++-+++..+-+.|. .|-...+.+++++.++.
T Consensus 95 RlyGgAL~s~aLi~w~~l~t~ek~iI------rwtLL~ea~y~~vq~~vtt~t~~e~------~~~s~~~~llLisr~lf 162 (179)
T PF14936_consen 95 RLYGGALLSIALIFWNALYTAEKAII------RWTLLSEACYFGVQFLVTTATLAEM------GWLSNAALLLLISRLLF 162 (179)
T ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHh------cCcchhHHHHHHHHHHH
Confidence 36677777777776643322211111 2344444444444444322222222 12223457888899999
Q ss_pred HHHHHHHHhhcC
Q 041515 751 FLLQWSGALALG 762 (762)
Q Consensus 751 f~ln~s~fl~Ig 762 (762)
.++++.-|..+|
T Consensus 163 ~liS~yyYy~~g 174 (179)
T PF14936_consen 163 ALISMYYYYQLG 174 (179)
T ss_pred HHHHHHHHHHhc
Confidence 999998888776
No 398
>PLN02320 seryl-tRNA synthetase
Probab=49.65 E-value=83 Score=37.01 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhH--HHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHH
Q 041515 284 FYLEQLDEQVGAKKHN--LVELELQWDALKESLEEKKRSLEESLYANELEAQAKLL--KLREVELERQSVLSEIRKREDE 359 (762)
Q Consensus 284 ~n~~kL~~~~~~~~~~--l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~--~ik~~~~~~~~~~~e~~~k~e~ 359 (762)
+|.+.+.+-+....-. +.++-..|++.|. +..++.+|+.+......+...+.. +.+++.++++++.+++...++.
T Consensus 74 ~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~-~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~ 152 (502)
T PLN02320 74 DNKEAVAINIRNRNSNANLELVLELYENMLA-LQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEED 152 (502)
T ss_pred hCHHHHHHHHHhcCCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhcC
Q 041515 360 YSKLSADLEKQ 370 (762)
Q Consensus 360 ~~~L~~~~~~~ 370 (762)
..+++.++..+
T Consensus 153 ~~~~~~~l~~~ 163 (502)
T PLN02320 153 LVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHH
No 399
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=49.53 E-value=8.7e+02 Score=33.37 Aligned_cols=167 Identities=21% Similarity=0.258 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-----hHHHHHHHHHH----------------HHHHHHHHHHHHHHHh
Q 041515 297 KHNLVELELQWDALKESLEEKKRSLEESLYAN-----ELEAQAKLLKL----------------REVELERQSVLSEIRK 355 (762)
Q Consensus 297 ~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~-----~~e~~~k~~~i----------------k~~~~~~~~~~~e~~~ 355 (762)
+.++.+|.++|++....-.+|=+.|.++.+.. -.+++++++++ +.+-++.+.++.|...
T Consensus 1347 ~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~~~~l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~ 1426 (2473)
T KOG0517|consen 1347 EKKLRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADAKKKLDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEV 1426 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999988888764421 23344444433 3444566677777777
Q ss_pred hHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 041515 356 REDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKK 435 (762)
Q Consensus 356 k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akk 435 (762)
+.+....|...-..|+.+.+ =..+|.+-+.-+-..=+++ +.=+..=++.+....+...=.|.|-||+..=.-+.
T Consensus 1427 ~~~kv~el~s~~~~ma~~~~---~a~~I~~~~~~v~~Rf~~L---~~Pl~~R~~~Le~S~e~hQf~~dvddE~~WV~Erl 1500 (2473)
T KOG0517|consen 1427 RAQKVAELQSQAKAMAEEGH---SAENIEETTLAVLERFEDL---LGPLQERRKQLEASKELHQFVRDVDDELLWVAERL 1500 (2473)
T ss_pred HHHHHHHHHHhhHhhhccCc---chhhHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhC
Confidence 77777777777777777665 3455555555444433333 33333334555555666666788888888765544
Q ss_pred cch--------HHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Q 041515 436 DQS--------FEQVSEKILATDRVRREIAEYEKKLAAVASR 469 (762)
Q Consensus 436 d~~--------~~~l~~~i~~tg~~~rei~~le~qi~~~~~k 469 (762)
.-+ ....-..+...-++..||.-.+-+|+..-.+
T Consensus 1501 P~A~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl~~ 1542 (2473)
T KOG0517|consen 1501 PLASSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVLER 1542 (2473)
T ss_pred ccCCchhhccChHHHHHHHHHhHHHHHHHHhcchHHHHHHHH
Confidence 321 2333445556667888888888888766554
No 400
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=48.97 E-value=5.3e+02 Score=30.71 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDAL 310 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~ 310 (762)
.+.-+......+++...++.++...+++.
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~~~~~~ 277 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKEEEEEE 277 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777766543
No 401
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=48.86 E-value=2e+02 Score=35.40 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHH
Q 041515 286 LEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLY--ANELEAQAKLLKLREVELERQSVLSEIRK---REDEY 360 (762)
Q Consensus 286 ~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~--~~~~e~~~k~~~ik~~~~~~~~~~~e~~~---k~e~~ 360 (762)
-+|++++-++.+++|++.-+ -..|.+++..|+.++. ++.++...| ++|+.++++||+-+.+.-. -.|.|
T Consensus 648 k~KIe~L~~eIkkkIe~av~-----ss~LK~k~E~Lk~Evaka~~~pd~~~k-~kieal~~qik~~~~~a~~~~~lkek~ 721 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIR-----SSDLKSKIELLKLEVAKASKTPDVTEK-EKIEALEQQIKQKIAEALNSSELKEKF 721 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHhcCCCCCcchH-HHHHHHHHHHHHHHHHHhccHhHHHHH
Confidence 33444444444444444322 2346777777887543 444444444 6788888888877776633 25556
Q ss_pred HHHHHHHh
Q 041515 361 SKLSADLE 368 (762)
Q Consensus 361 ~~L~~~~~ 368 (762)
+.|+.++.
T Consensus 722 e~l~~e~~ 729 (762)
T PLN03229 722 EELEAELA 729 (762)
T ss_pred HHHHHHHH
Confidence 66777764
No 402
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=48.86 E-value=3.8e+02 Score=28.96 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIR 354 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~ 354 (762)
+.-++.|+..-+-+.--.-++..+|..+.....+++.+...-..+ ..|.+...++|-+...++++.++++.
T Consensus 195 eF~L~ELESFKEinTtwfNgmksEWA~V~~AwkneLsEINSI~~g-vEeLkKLAqEIss~Sn~lk~TIseLE 265 (353)
T PF01540_consen 195 EFVLNELESFKEINTTWFNGMKSEWARVQEAWKNELSEINSIIKG-VEELKKLAQEISSHSNKLKATISELE 265 (353)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889998888888888899999999999999987777743221 12223333344444444544444443
No 403
>PRK09577 multidrug efflux protein; Reviewed
Probab=48.75 E-value=2.7e+02 Score=35.86 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=26.1
Q ss_pred hhhhcchhHHHHHHHhhhHHHH---HHHHHHHhcccccHHHHHHHHHHHHhhh
Q 041515 612 TSLKHNSVGFYQMSKIAVTPTI---VLAEFILFSKTISYKKVLALAIVSVGVA 661 (762)
Q Consensus 612 ~SL~yvsVs~~qmlKsas~P~~---vll~~l~lgek~s~~~~lsLlli~~GV~ 661 (762)
+++.|.|.-.--++- +++|+. +++..+++|..++...+++++ +.+|++
T Consensus 882 l~~~F~S~~~plii~-~~iPl~l~G~~~~l~l~g~~l~~~s~~G~i-~L~Giv 932 (1032)
T PRK09577 882 LAALYESWSIPFAVM-LVVPLGVIGAVLGVTLRGMPNDIYFKVGLI-ATIGLS 932 (1032)
T ss_pred HHHHHHhHHhHHHHH-HHhhHHHHHHHHHHHHhCCCccHHHHHHHH-HHHHHH
Confidence 344444443333333 256764 345555667777777777666 445554
No 404
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=48.63 E-value=4.1e+02 Score=29.34 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=33.2
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 041515 385 EITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLA 464 (762)
Q Consensus 385 Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~ 464 (762)
++-.-+-+..+|..+..+++-.|+.++-.++.++.=.-+..+++ -..+...-+..+.+.-|+.||+++-.
T Consensus 217 ~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL----------~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 217 SLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEEL----------QQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444333333333 23444455555566666666666544
No 405
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=48.62 E-value=2.1e+02 Score=25.98 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
.+++|-.++.+..++++-+..-++--++|+.+++++
T Consensus 64 ~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 64 YLQQIDQIEEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455666666677777766676777777777776653
No 406
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=48.62 E-value=1.4e+02 Score=38.14 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=23.8
Q ss_pred HHHHhhhhcchhHHHHHHHhhhHHHH---HHHHHHHhcccccHHHHHHHHH
Q 041515 608 GLANTSLKHNSVGFYQMSKIAVTPTI---VLAEFILFSKTISYKKVLALAI 655 (762)
Q Consensus 608 ~l~N~SL~yvsVs~~qmlKsas~P~~---vll~~l~lgek~s~~~~lsLll 655 (762)
++.-.+..|.|+..--++- +++|+. ++++.+++|..++....+|++.
T Consensus 875 iyliL~~~F~S~~~PliIm-~~IPla~~G~~~~l~i~g~~l~~~s~iG~i~ 924 (1021)
T PF00873_consen 875 IYLILAAQFESFRQPLIIM-LTIPLALIGVLLGLFITGQPLSFMSLIGIIA 924 (1021)
T ss_dssp HHHHHHHHTTSSSTHHHHH-TTHHHHHHHHHHHHHHTTBEBSHHHHHHHHH
T ss_pred HHHHHHHHhcceeeeEEEE-eccchhhHHHHHHHhhccccccccceehHHH
Confidence 3334445555554444444 356653 3445555566666655554443
No 407
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=48.36 E-value=2.6e+02 Score=26.88 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhcCCCc
Q 041515 346 RQSVLSEIRKREDEYSKLSADLEKQPKV 373 (762)
Q Consensus 346 ~~~~~~e~~~k~e~~~~L~~~~~~~~k~ 373 (762)
...+..++....+.+.+....+++++.+
T Consensus 54 ae~a~~~L~~~~~~~~~i~e~~~kl~~~ 81 (126)
T PF09403_consen 54 AEAAEAELAELKELYAEIEEKIEKLKQD 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 408
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=48.23 E-value=1.4e+02 Score=27.23 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=16.7
Q ss_pred hhHHHHHHHHH--HHHHhhHHHHHHHHHHHhhHHH
Q 041515 282 TEFYLEQLDEQ--VGAKKHNLVELELQWDALKESL 314 (762)
Q Consensus 282 ~~~n~~kL~~~--~~~~~~~l~~L~~qWe~~r~pl 314 (762)
++...+.|... ....-.++.+|..+|-+....+
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~ 45 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQEL 45 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHH
Confidence 44444444443 2333445667766665554444
No 409
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=48.18 E-value=2.1e+02 Score=28.94 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYS 361 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~ 361 (762)
.++-+++|...+.+..+++..|++.--.+ ..|+++|... -.+.+|+.+++++..|++...+.++
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~s~v----eaEik~L~s~------------Lt~eemQe~i~~L~kev~~~~erl~ 140 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTCSYV----EAEIKELSSA------------LTTEEMQEEIQELKKEVAGYRERLK 140 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh------------cChHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888776666666665554432222 2223333322 2345556667777777777666666
Q ss_pred HHHHHHhcC
Q 041515 362 KLSADLEKQ 370 (762)
Q Consensus 362 ~L~~~~~~~ 370 (762)
.++.--.-+
T Consensus 141 ~~k~g~~~v 149 (201)
T KOG4603|consen 141 NIKAGTNHV 149 (201)
T ss_pred HHHHhcccC
Confidence 665544333
No 410
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.12 E-value=1.5e+02 Score=35.54 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV 373 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~ 373 (762)
+++..+++++.+..++....+..++...+++++|+.
T Consensus 227 e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~ 262 (555)
T TIGR03545 227 EGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQN 262 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHh
Confidence 334445556666666666666677777777777774
No 411
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=48.03 E-value=1.3e+02 Score=31.77 Aligned_cols=52 Identities=4% Similarity=0.194 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREA 433 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~a 433 (762)
|.++.-.. +.+|+++|..+-.+..++++.-..+..-+.+.....++.|=.|-
T Consensus 71 ~~~~l~~~---v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 71 YNEQLERQ---VASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444443 44667777777777777777777777777777777776664443
No 412
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.93 E-value=1.2e+02 Score=28.20 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNS 413 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~ 413 (762)
+.+|+-.+.+++++-+++|.++-.....++.+++.
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666665555555555555544
No 413
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=47.72 E-value=2.7e+02 Score=32.88 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc--cChHHHHHHHHHHHhhhhhhHHhHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV--ASRRSYIERIKEITKNSRKVDTDIER 399 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~--~~R~~Yt~RI~Eiv~nirKQ~~eI~K 399 (762)
++...+++.+.+.+|++...+.+..|+.|++.--++ ..=+.-+..+-.+-..+-||+++|+.
T Consensus 449 rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 449 RLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666776777777777777732221 22222356667777788888888864
No 414
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=47.69 E-value=5.4e+02 Score=30.45 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=39.0
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhcCccc
Q 041515 382 RIKEITKNSRKVDTDIERILKETRELQLESNSIQ----------ERLHRTYAVVDDMIFREAKKDQ 437 (762)
Q Consensus 382 RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~----------~~l~Rtf~v~delif~~akkd~ 437 (762)
.+.+-++.|.++=++|.+|+.-+..+=.|.|-+. |.--|=|+|+=+=|-+-|.+..
T Consensus 346 ~~~~~~~~l~~~~~~I~~i~~~I~~IA~QTNLLALNAAIEAARAGE~GrGFAVVA~EVR~LA~~s~ 411 (554)
T PRK15041 346 NVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSA 411 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHH
Confidence 3444555566677788888888888887777653 2234889998888888877744
No 415
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.46 E-value=2.2e+02 Score=26.25 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHhhhee
Q 041515 631 PTIVLAEFILFSKTISYKKVLALAIVSVGVAVA 663 (762)
Q Consensus 631 P~~vll~~l~lgek~s~~~~lsLlli~~GV~la 663 (762)
.+++.++.++++|.+.|..+.+.+.+.+||.++
T Consensus 81 ~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 81 AIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999888887654
No 416
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=47.35 E-value=4.4e+02 Score=29.30 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH--H-HHHHHHHHHHhh-----------chHHHHHHHHHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESL--E-EKKRSLEESLYA-----------NELEAQAKLLKLREVELERQS 348 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl--~-~~~~~l~~~~~~-----------~~~e~~~k~~~ik~~~~~~~~ 348 (762)
-..++|..+.++.+.+-=..+...|+.|+.-+ . .-.++|...+-. ...+-+..+.++..|+.+.+.
T Consensus 130 ~~~~~kyr~~L~~A~~sD~~v~~k~~~~~~~l~lLs~~~~~l~~~lPss~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~ 209 (339)
T cd09235 130 RAEGSKYRTILDNAVQADKIVREKYESHREGIELLSKPEEELANAIPSASPAKTLQGSEAVQELRQLMEQVETIKAEREV 209 (339)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999988899999999998833 1 112334433211 112334456667777777777
Q ss_pred HHHHHHhhH-HHHHHHHHHH
Q 041515 349 VLSEIRKRE-DEYSKLSADL 367 (762)
Q Consensus 349 ~~~e~~~k~-e~~~~L~~~~ 367 (762)
+.++++.++ +...+|...+
T Consensus 210 ~~~~Lk~~~dDI~~~ll~~~ 229 (339)
T cd09235 210 IESELKSATFDMKSKFLSAL 229 (339)
T ss_pred HHHHHHhcccccHHHHHHHH
Confidence 777776553 3334455555
No 417
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.33 E-value=4.4e+02 Score=29.30 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 041515 527 GPVVAMTFNFVVSVGIILT 545 (762)
Q Consensus 527 ~~~~ai~~~~v~Sv~ii~~ 545 (762)
+.++..++|.+.++.+.++
T Consensus 339 ~~~~gl~l~~~~~l~~~~i 357 (362)
T TIGR01010 339 TFVILLILYGVLSLLLASI 357 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455566665555444
No 418
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=47.29 E-value=6.5e+02 Score=31.25 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSK 362 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~ 362 (762)
..+.+-|+..-+..-.-++.++.+-.+.+..+.++-.+|.+--..=..|+.+--.++.+.-.+++...-.+..-|.+..-
T Consensus 447 ~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~i 526 (861)
T PF15254_consen 447 LKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQI 526 (861)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhH
Confidence 33444444444444444444444444455555444444443211111222211112222223333333333333333333
Q ss_pred HHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 041515 363 LSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKET 404 (762)
Q Consensus 363 L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dt 404 (762)
|.-.+. .|.+=+.|..|++.++. .-|.|.|.|.
T Consensus 527 L~itlr------QrDaEi~RL~eLtR~LQ---~Sma~lL~dl 559 (861)
T PF15254_consen 527 LGITLR------QRDAEIERLRELTRTLQ---NSMAKLLSDL 559 (861)
T ss_pred hhhHHH------HHHHHHHHHHHHHHHHH---HHHHHHhhhc
Confidence 333332 36667788888887775 4677777764
No 419
>KOG2607 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=47.12 E-value=3.8e+02 Score=30.82 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515 375 SRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417 (762)
Q Consensus 375 ~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~ 417 (762)
+|...++|-.|--..-++-+-...-+++|||.|||+|+..-.|
T Consensus 453 ~~elm~q~q~ealEe~~~levkL~elle~tr~lqk~IEadISk 495 (505)
T KOG2607|consen 453 NSELMLQRQVEALEEKKHLEVKLRELLEDTRRLQKEIEADISK 495 (505)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777888899999999999999876544
No 420
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=46.89 E-value=1.8e+02 Score=31.81 Aligned_cols=137 Identities=13% Similarity=0.140 Sum_probs=73.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH-HHcCCCCCC-CCC---Cc--cchh---
Q 041515 525 ICGPVVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIF-KAFSIIPVS-PPA---IT--TPFS--- 594 (762)
Q Consensus 525 ~~~~~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~-~~~~~~~~~-~~~---~~--~~~~--- 594 (762)
..+....+..-++..+-++.=-|++-. ++.+ |+....++-+++.+.+.++ ..+..+|.. +++ +. ..|.
T Consensus 175 itGdllIiiaqiivaiQ~v~Eek~l~~-~nV~-pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~ 252 (372)
T KOG3912|consen 175 ITGDLLIIIAQIIVAIQMVCEEKQLKK-SNVA-PLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAF 252 (372)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhh-ccCC-HHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHH
Confidence 445566677778888888887777754 4666 9999999999996554433 334444432 110 00 1111
Q ss_pred -------HHHHHHHHHHHHHHHHHhhh----hcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhhee
Q 041515 595 -------SLFALGVVMSFATGLANTSL----KHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAVA 663 (762)
Q Consensus 595 -------~l~plgl~~~l~i~l~N~SL----~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~la 663 (762)
.+......+..++.+.|++= ++.|...-.++-++-+-++-+++..+..|.+....+++.++...|.++.
T Consensus 253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223445555555543 3333333333332212222123333444777777777776666666554
No 421
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=46.87 E-value=6.4 Score=49.19 Aligned_cols=129 Identities=18% Similarity=0.301 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHH----HHHHHHhh
Q 041515 375 SRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQV----SEKILATD 450 (762)
Q Consensus 375 ~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l----~~~i~~tg 450 (762)
.|..+.+++-+.-.-+.-.+..+.+.-.--+.|+-|+..+...|++.-+...++==+--+-|....+. -+...+.+
T Consensus 322 aKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d 401 (859)
T PF01576_consen 322 AKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERD 401 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666555555555555556666666666666666555444322221112221111 22334456
Q ss_pred HHHHHHHHHHHHHHHHhccc----cchhhhhhhHHHHHHHhhhhhhhccCCCchhHH
Q 041515 451 RVRREIAEYEKKLAAVASRS----LNVDKLQADVDVIMKENEFLEQQFHRDGRALEE 503 (762)
Q Consensus 451 ~~~rei~~le~qi~~~~~k~----~nle~i~~D~~~i~~en~~~~s~~g~~~~~~~~ 503 (762)
+..++.+.++.++....... ..++.+..-.+.+..|.+.+.+..+..|+++.+
T Consensus 402 ~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~e 458 (859)
T PF01576_consen 402 AAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHE 458 (859)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHH
Confidence 66777777777776665533 333333333344444444444444444444443
No 422
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=46.56 E-value=65 Score=37.31 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 041515 741 SAIFISALLGFLLQWS 756 (762)
Q Consensus 741 ~~i~lsgvlgf~ln~s 756 (762)
..++.+..+|+++++.
T Consensus 192 ~~ll~P~~ig~ai~~~ 207 (459)
T PF10337_consen 192 KTLLKPFLIGIAIALV 207 (459)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555444
No 423
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=46.38 E-value=1.8e+02 Score=28.23 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDI 397 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI 397 (762)
+|.++++.+++....+..+.+..++|-.+-. ...+.=+|++-|..+++-=+.|
T Consensus 87 ~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~-------~~~~mi~iL~~Ie~l~~vP~ki 139 (142)
T PF04048_consen 87 RIRELKESLQEAKSLLGCRREELKELWQRSQ-------EYKEMIEILDQIEELRQVPDKI 139 (142)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHH
Confidence 4566677888888888888887777755433 3334455555555555443333
No 424
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.26 E-value=5.8e+02 Score=30.40 Aligned_cols=92 Identities=15% Similarity=0.367 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcCccchHHHH--------
Q 041515 378 SYIERIKEITKNSRKVDTDIERILKETRELQLESNS-------IQERLHRTYAVVDDMIFREAKKDQSFEQV-------- 442 (762)
Q Consensus 378 ~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~-------~~~~l~Rtf~v~delif~~akkd~~~~~l-------- 442 (762)
.|.+||+|+-.-+++-+.+...+..+...+-+.-.. +...=-|-=+.+.|.-||+++-=..++++
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 488999999888888888887777776655443221 12222345567778888888762222211
Q ss_pred --HHHHHHh----hHHHHHHHHHHHHHHHHhcc
Q 041515 443 --SEKILAT----DRVRREIAEYEKKLAAVASR 469 (762)
Q Consensus 443 --~~~i~~t----g~~~rei~~le~qi~~~~~k 469 (762)
|..++-. --++-||+-||+.++-.++.
T Consensus 184 KqVs~LR~sQVEyEglkheikRleEe~elln~q 216 (772)
T KOG0999|consen 184 KQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQ 216 (772)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222211 23567777788777777763
No 425
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=46.20 E-value=4.7e+02 Score=29.27 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=29.8
Q ss_pred HHHHHhhc-CccchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 041515 426 DDMIFREA-KKDQSFEQVSEKILATDRVRREIAEYEKKLAAV 466 (762)
Q Consensus 426 delif~~a-kkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~ 466 (762)
+++.-++- |.|+....|-+.+.....+..+|++...+....
T Consensus 253 e~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~ 294 (353)
T cd09236 253 EDLFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAFLQS 294 (353)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344 447778889999999999999999888877543
No 426
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=46.07 E-value=2e+02 Score=29.54 Aligned_cols=8 Identities=25% Similarity=0.085 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 041515 739 NSSAIFIS 746 (762)
Q Consensus 739 ~~~~i~ls 746 (762)
.|..++++
T Consensus 180 ~~~~iiig 187 (206)
T PF06570_consen 180 PWVYIIIG 187 (206)
T ss_pred HHHHHHHH
Confidence 34444433
No 427
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=46.06 E-value=2.8e+02 Score=26.64 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHh
Q 041515 333 QAKLLKLREVELERQSVLSEIRK------REDEYSKLSADLE 368 (762)
Q Consensus 333 ~~k~~~ik~~~~~~~~~~~e~~~------k~e~~~~L~~~~~ 368 (762)
...+.+.+++..++.+..+.++. ..+.|++|.++|+
T Consensus 58 ~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~ 99 (126)
T PF09403_consen 58 EAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYK 99 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 33455555555555554444432 3677788777766
No 428
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=45.38 E-value=6.1e+02 Score=30.37 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhh
Q 041515 341 EVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNS 390 (762)
Q Consensus 341 ~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~ni 390 (762)
.+..++.++.++.+..++..++.-+.++.+ +..|.+++-+.+++.
T Consensus 467 ~~q~e~~~~Q~~~e~~~~e~~e~~~al~el-----~~~~~~~~~~~~~~~ 511 (607)
T KOG0240|consen 467 DIQQELSEIQEENEAAKDEVKEVLTALEEL-----AVNYDQKSEEKESKL 511 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHhhhh
Confidence 334444455555554444444444444422 344555555554433
No 429
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=45.29 E-value=4.5e+02 Score=28.82 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 041515 265 YQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVEL 344 (762)
Q Consensus 265 ~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~ 344 (762)
+.++.....-........+.++.||...+.-.-+|+..=.+--..--.||+.++|++...++.- +++-.+ ...
T Consensus 229 ~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~----~e~y~q---~~~ 301 (384)
T KOG0972|consen 229 LEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSEL----REKYKQ---ASV 301 (384)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---hcc
Confidence 3333344444555566667777788777777777776555444455567777777776654422 111111 111
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHH-----HHHHHHH
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESN-----SIQERLH 419 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein-----~~~~~l~ 419 (762)
.+.+--+++..--+.++++++++|+....++--+=...| |+-|.|.-+||-++--+|- -++..|.
T Consensus 302 gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkI----------kqavsKLk~et~~mnv~igv~ehs~lq~~l~ 371 (384)
T KOG0972|consen 302 GVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKI----------KQAVSKLKEETQTMNVQIGVFEHSILQTYLR 371 (384)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHH----------HHHHHHHHHHHHhhhhheehhhHHHHHHHHH
Confidence 111112222222344455555555554433333333333 3445555566665555443 3445555
Q ss_pred HHHHH
Q 041515 420 RTYAV 424 (762)
Q Consensus 420 Rtf~v 424 (762)
|+|+-
T Consensus 372 ~~~N~ 376 (384)
T KOG0972|consen 372 DHFNF 376 (384)
T ss_pred HHhcc
Confidence 55543
No 430
>PRK13499 rhamnose-proton symporter; Provisional
Probab=45.25 E-value=3.1e+02 Score=30.84 Aligned_cols=28 Identities=4% Similarity=0.103 Sum_probs=20.5
Q ss_pred HHhccccc------HHHHHHHHHHHHhhheeeec
Q 041515 639 ILFSKTIS------YKKVLALAIVSVGVAVATVT 666 (762)
Q Consensus 639 l~lgek~s------~~~~lsLlli~~GV~la~~~ 666 (762)
+++||.-+ ...+++++++++|+++..++
T Consensus 309 i~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 309 LVLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 46887555 66678888888888877654
No 431
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=45.03 E-value=1.7e+02 Score=32.21 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH-HHHHHHHHcCCCCCCC------CCC--ccchhHHHHHHH
Q 041515 531 AMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAW-ILLAIFKAFSIIPVSP------PAI--TTPFSSLFALGV 601 (762)
Q Consensus 531 ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~-ill~i~~~~~~~~~~~------~~~--~~~~~~l~plgl 601 (762)
.+..|..+=.-+.-....++..++ ++.+|+.++. ++..+......++... +-+ ...+..++..++
T Consensus 176 Ll~~~L~fDgfTn~tQd~lf~~~k------~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 176 LLFGYLLFDGFTNATQDSLFKKYK------VSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred HHHHHHHHHhhHHhHHHHHhccCC------ccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 455566665556666777777533 3445555443 2222222222222110 001 123456676666
Q ss_pred HHHHHHHHHHhhh-hcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhhhe
Q 041515 602 VMSFATGLANTSL-KHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVGVAV 662 (762)
Q Consensus 602 ~~~l~i~l~N~SL-~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~GV~l 662 (762)
+.+++-.+-..-+ ++-|+.+.++.- .=--+..+++.+++|.+.++..|+++.+++.|..+
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~t-tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMT-TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHH-HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 6554433322222 445555554432 11234467788999999999999988887776543
No 432
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.97 E-value=4.7e+02 Score=28.93 Aligned_cols=168 Identities=16% Similarity=0.158 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-----------hHHHHHHHHHHHHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYAN-----------ELEAQAKLLKLREVELERQSVLS 351 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~-----------~~e~~~k~~~ik~~~~~~~~~~~ 351 (762)
.+-.+.|++.+.++...+.+|..+-- .|..|+.-|-.-.+.-... ......+...+..++.+++.+.+
T Consensus 96 ~~~~~~le~~L~~~~e~v~qLrHeL~-~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEe 174 (306)
T PF04849_consen 96 SERNEALEEQLGAALEQVEQLRHELS-MKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEE 174 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHH
Confidence 45556666666666666766654432 2233333232222211100 00111233456677778888888
Q ss_pred HHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041515 352 EIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFR 431 (762)
Q Consensus 352 e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~ 431 (762)
|...-.....+|..+-...-.. ..+=|.|+|+++.-=...| ..|+.|+..-++-..|.--.|..++-+
T Consensus 175 EN~~LR~Ea~~L~~et~~~Eek-----EqqLv~dcv~QL~~An~qi-------a~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 175 ENEQLRSEASQLKTETDTYEEK-----EQQLVLDCVKQLSEANQQI-------ASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHhhHHHhhccHH-----HHHHHHHHHHHhhhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665533221 3334666766665544444 344445555555555555555555555
Q ss_pred hcCccchHHHHHHHHHHhhHHHHHHHHHHHHH
Q 041515 432 EAKKDQSFEQVSEKILATDRVRREIAEYEKKL 463 (762)
Q Consensus 432 ~akkd~~~~~l~~~i~~tg~~~rei~~le~qi 463 (762)
=++....|+++..--++.+....+..+-+.++
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQL 274 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55555566666555555554444444444333
No 433
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=44.96 E-value=3.5e+02 Score=33.01 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=14.1
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHH
Q 041515 551 GQVGFNFPIFLTVIHYAVAWILLAIF 576 (762)
Q Consensus 551 ~~~gF~~Pl~Lt~~q~l~a~ill~i~ 576 (762)
+..|...=+.++.+|..+.+.+.+++
T Consensus 153 ~~~Gl~HLlAISGlHi~l~~~~~~~l 178 (662)
T TIGR00361 153 QKTGTAHLLAISGLHIGLAAGLFYIL 178 (662)
T ss_pred HHhCHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344445567777776555444444
No 434
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.82 E-value=1.4e+02 Score=25.81 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhh
Q 041515 315 EEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSR 391 (762)
Q Consensus 315 ~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nir 391 (762)
.+-...|+.++..- ++.|..++.++.++.++-....+...+|+.+.+++- ..|+....||--+++.++
T Consensus 3 ~E~l~~LE~ki~~a-------veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~--~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 3 LELLEQLEEKIQQA-------VETIALLQMENEELKEKNNELKEENEELKEENEQLK--QERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh
No 435
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=44.75 E-value=2.2e+02 Score=26.57 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSK 362 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~ 362 (762)
.+-++.|+.-++..+-...+| -+-|..|..-.+.|+.+... ...++.+++.++-++...+......+-+
T Consensus 15 ~n~La~Le~slE~~K~S~~eL----~kqkd~L~~~l~~L~~q~~s-------~~qr~~eLqaki~ea~~~le~eK~ak~~ 83 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGEL----AKQKDQLRNALQSLQAQNAS-------RNQRIAELQAKIDEARRNLEDEKQAKLE 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH----HHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666555555444444 44444455555556554222 2346667777776666666653333337
Q ss_pred HHHHHhcCC
Q 041515 363 LSADLEKQP 371 (762)
Q Consensus 363 L~~~~~~~~ 371 (762)
|+..+.+.-
T Consensus 84 l~~r~~k~~ 92 (107)
T PF09304_consen 84 LESRLLKAQ 92 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666443
No 436
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=44.71 E-value=2e+02 Score=32.87 Aligned_cols=30 Identities=7% Similarity=0.173 Sum_probs=20.7
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 390 SRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 390 irKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
+-++..++.....|...-++.-+.+-.+++
T Consensus 337 l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 337 LNRQRDEMSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466677777788877777777776654
No 437
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=44.58 E-value=2.8e+02 Score=31.45 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=44.3
Q ss_pred HhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHhcCCCccChHHHHHHHH
Q 041515 309 ALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYS----KLSADLEKQPKVASRRSYIERIK 384 (762)
Q Consensus 309 ~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~----~L~~~~~~~~k~~~R~~Yt~RI~ 384 (762)
++..-|.+.|..||+... .|++--++.++|=|=+...+++.+-...|+++ .|+.++..|-..+.=++| .|-.
T Consensus 274 ~~q~~Leesye~Lke~~k---rdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsy-ERaR 349 (455)
T KOG3850|consen 274 ETQALLEESYERLKEQIK---RDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSY-ERAR 349 (455)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344455566666665433 23333334444444444445555544444443 488888888775545555 3555
Q ss_pred HHHhhhhhhHHhHHH
Q 041515 385 EITKNSRKVDTDIER 399 (762)
Q Consensus 385 Eiv~nirKQ~~eI~K 399 (762)
+|=.+.+-=+.-|.|
T Consensus 350 dIqEalEscqtrisK 364 (455)
T KOG3850|consen 350 DIQEALESCQTRISK 364 (455)
T ss_pred HHHHHHHHHHHHHHH
Confidence 554444444444433
No 438
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.54 E-value=4.6e+02 Score=30.08 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=51.9
Q ss_pred HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 293 VGAKKHNLVELELQWDALKESLEEKKRSLEESLYANE--LEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 293 ~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~--~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
.++...|...|..|-.++..--.+|.-.||.++..-+ -+++. -++.+++.+-++.....+-+-|+...|-...+|-+
T Consensus 253 LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs-~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~ 331 (395)
T PF10267_consen 253 LQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQS-YERARDIWEVMESCQTRISKLEQQQQQQVVQLEGT 331 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 3445567777777888888777888888887766432 22332 24666666667666666665553333344456666
Q ss_pred CCccChHH
Q 041515 371 PKVASRRS 378 (762)
Q Consensus 371 ~k~~~R~~ 378 (762)
+....|..
T Consensus 332 ~n~~~r~~ 339 (395)
T PF10267_consen 332 ENSRARAL 339 (395)
T ss_pred ccccHHHH
Confidence 66555644
No 439
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=44.41 E-value=31 Score=32.33 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=28.2
Q ss_pred HHHHHhhhhhhHHhHHHH------HHHHHHHHHHHHHHH
Q 041515 383 IKEITKNSRKVDTDIERI------LKETRELQLESNSIQ 415 (762)
Q Consensus 383 I~Eiv~nirKQ~~eI~Ki------l~dtr~lqkein~~~ 415 (762)
.+||.+|=.+|.+=|.-+ +.|.+.||||+|.+-
T Consensus 2 vme~t~NKerQreIIsyl~n~dl~~~~~k~LqkeLn~Lm 40 (126)
T PF10654_consen 2 VMEITENKERQREIISYLVNNDLSFSKRKELQKELNQLM 40 (126)
T ss_pred hhhhhhhHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 478999999999888877 468999999999873
No 440
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=44.35 E-value=3.7e+02 Score=29.64 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=13.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHh
Q 041515 305 LQWDALKESLEEKKRSLEESLY 326 (762)
Q Consensus 305 ~qWe~~r~pl~~~~~~l~~~~~ 326 (762)
.||-+-|.-|.-|.++|++++.
T Consensus 111 KqWLEERR~lQgEmQ~LrDKLA 132 (351)
T PF07058_consen 111 KQWLEERRFLQGEMQQLRDKLA 132 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666554
No 441
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=44.33 E-value=2.7e+02 Score=32.31 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=48.1
Q ss_pred chhHHHHHHHhhh---HHHH--HHHHHHHh----cccccHHHHH--HHHHHHHhhheeeecCccccHHHHHHHHHHHHHH
Q 041515 617 NSVGFYQMSKIAV---TPTI--VLAEFILF----SKTISYKKVL--ALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPS 685 (762)
Q Consensus 617 vsVs~~qmlKsas---~P~~--vll~~l~l----gek~s~~~~l--sLlli~~GV~la~~~d~~fs~~G~ilalls~l~~ 685 (762)
.||..|+..-.++ +-|+ ++++++++ |.++++-.|+ ++.++++=+.+.+..|- --++..++++|..|.
T Consensus 286 ~Pvd~Y~~~~Ra~KYgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEh--i~F~~AYliAa~a~i 363 (430)
T PF06123_consen 286 EPVDHYQKSERAVKYGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEH--IGFNLAYLIAALACI 363 (430)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHHHHHH
Confidence 4777777665542 2232 23333333 4677887774 44444444444444332 125667788888888
Q ss_pred HHHHHHHHHhhhcC
Q 041515 686 AINKILWSNLQQQG 699 (762)
Q Consensus 686 Al~~V~~kkllk~~ 699 (762)
++-..|....++..
T Consensus 364 ~Li~~Y~~~vl~~~ 377 (430)
T PF06123_consen 364 GLISLYLSSVLKSW 377 (430)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999988887643
No 442
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=43.94 E-value=1.5e+02 Score=29.85 Aligned_cols=53 Identities=26% Similarity=0.291 Sum_probs=25.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 041515 302 ELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRED 358 (762)
Q Consensus 302 ~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e 358 (762)
.|.++=+..+..|.+|.++|.+++..-+ +.+ .+.|.+|.+...+..|+..=++
T Consensus 113 rL~~~Vd~~~~eL~~eI~~L~~~i~~le-~~~---~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 113 RLCQQVDQTKNELEDEIKQLEKEIQRLE-EIQ---SKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666544221 111 1334445555555555544333
No 443
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=43.80 E-value=4e+02 Score=27.81 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDT 395 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~ 395 (762)
+++.++.+++....++..-+..|.....++... |..|.+..-++-......++
T Consensus 151 e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~-----~~~~~~~~~~~~~~~Q~lEe 203 (236)
T cd07651 151 ELEKNNAKLNKAQSSINSSRRDYQNAVKALREL-----NEIWNREWKAALDDFQDLEE 203 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777777633 44577766666555544333
No 444
>PF14992 TMCO5: TMCO5 family
Probab=43.67 E-value=4.7e+02 Score=28.55 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHH-------HH
Q 041515 340 REVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLE-------SN 412 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqke-------in 412 (762)
+++...-+..-..|+.+|+.++.|..|+.++...+.|+.=...|. ...++|....-.+|..|.++ +.
T Consensus 14 Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~------~~~e~~l~~le~e~~~LE~~ne~l~~~~~ 87 (280)
T PF14992_consen 14 QRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS------EERETDLQELELETAKLEKENEHLSKSVQ 87 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh------hchHHHHHHHHhhhHHHhhhhHhhhhhhh
Confidence 455567777788889999999999999999998888884333332 22233344444444444443 34
Q ss_pred HHHHHHHHHHHH
Q 041515 413 SIQERLHRTYAV 424 (762)
Q Consensus 413 ~~~~~l~Rtf~v 424 (762)
-++.+++|.|+-
T Consensus 88 elq~k~~e~~~~ 99 (280)
T PF14992_consen 88 ELQRKQDEQETN 99 (280)
T ss_pred hhhhhhccccCC
Confidence 446666666543
No 445
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=43.66 E-value=2.6e+02 Score=25.89 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHhcC----CCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH--HHHHHHHHhhchHHHHH
Q 041515 261 PEEEYQLLKAAAEMAFD----DSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK--KRSLEESLYANELEAQA 334 (762)
Q Consensus 261 ~e~~~~~~~~~~e~l~d----~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~--~~~l~~~~~~~~~e~~~ 334 (762)
++++........+++.. ........+..+-...+....++..+.++|..+-..+-.+ -..+.+-+.
T Consensus 10 L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~-------- 81 (143)
T PF05130_consen 10 LEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIE-------- 81 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHh--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhh
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKV 393 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ 393 (762)
.-.+++.+..+++....+++...+....|-...- .+++.++.++...+++
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~---------~~~~~~l~~l~~~~~~ 131 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQLLEQAL---------EFVQQLLNLLQPARKQ 131 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------HHHHHHHHHCCH----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhcCCCC
No 446
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=43.51 E-value=98 Score=27.32 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 395 TDIERILKETRELQLESNSIQERLHRTYAVVDD 427 (762)
Q Consensus 395 ~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~de 427 (762)
.|+.+++.+++++..++|...++++..|.-+.+
T Consensus 47 ~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~ 79 (90)
T PF06103_consen 47 KEINDLLHNTNELLEDVNEKLEKVDPVFEAVAD 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344455555555555555555555555544433
No 447
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.47 E-value=2.4e+02 Score=32.97 Aligned_cols=85 Identities=20% Similarity=0.165 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLL-KLREVELERQSVLSEIRKREDEY 360 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~-~ik~~~~~~~~~~~e~~~k~e~~ 360 (762)
|...|+-|-+.+.+.+.++.+|.+|=+..+.+.. +|++...+.....+..++ +-++++++.+++.++.+.-..+.
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~----~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENE----RLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888776655554433 333322211111111121 22455556666666666666666
Q ss_pred HHHHHHHhcC
Q 041515 361 SKLSADLEKQ 370 (762)
Q Consensus 361 ~~L~~~~~~~ 370 (762)
.+|...++.+
T Consensus 133 ~~l~~~l~~~ 142 (472)
T TIGR03752 133 DQLQRRLAGV 142 (472)
T ss_pred HHHHHHHhhc
Confidence 6676666543
No 448
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.46 E-value=2e+02 Score=28.43 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhHHHHH
Q 041515 286 LEQLDEQVGAKKHNLVEL 303 (762)
Q Consensus 286 ~~kL~~~~~~~~~~l~~L 303 (762)
+..|...+....+++.+|
T Consensus 74 l~~ld~ei~~L~~el~~l 91 (169)
T PF07106_consen 74 LAELDAEIKELREELAEL 91 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 449
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=43.43 E-value=75 Score=31.47 Aligned_cols=97 Identities=25% Similarity=0.281 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHhhhhcCC-cccccccccccCChhHHHHHHhhhhhhhcCCCCCCCCCChhHHHHHHhhHHHHHHHHhc
Q 041515 38 QSKMEESEVILLNSLKSGGV-SIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNL 116 (762)
Q Consensus 38 ~~~MeE~D~ii~~sl~~~g~-~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~~l~~~lP~~msaRfr~~~~lA~a~k~~ 116 (762)
+..+.+.=+=|.+=|...|+ +-+=....|+.-|...+++..-=.++.|||++++ --++-..+....|.+
T Consensus 35 k~~q~~~~~~I~~fL~~~~~~~~~is~k~l~~Pt~kdf~~I~~fL~~~idp~~~~----------~~k~eeev~~~lK~L 104 (157)
T PF03801_consen 35 KSYQQECIRKIYEFLSEHGFESHPISPKTLKSPTQKDFVEIFNFLFRQIDPNFKF----------GKKFEEEVPFLLKAL 104 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SS---TTTTSS--HHHHHHHHHHHHHTTSTT-------------SSTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccccCCCCHHHHHHHHHHHHHHhCCCCCc----------CcCHHHHHHHHHHHh
Q ss_pred CCCC-CCcccccccCChHH----HHHHHHHHHH
Q 041515 117 GYIG-DISYYKFLYPSEED----LYKLIRFLVE 144 (762)
Q Consensus 117 Gy~~-digy~tfLY~~~~d----lr~l~~fLie 144 (762)
||+. .|.=-++--++... +=.++-||+|
T Consensus 105 ~YP~~~isKS~L~a~gs~hsWP~lL~~L~WLv~ 137 (157)
T PF03801_consen 105 GYPFATISKSSLQAPGSPHSWPHLLGALHWLVE 137 (157)
T ss_dssp T-SS----HHHHHSTTSTTTHHHHHHHHHHHHH
T ss_pred CCCccccCHHHccCCCCcccHHHHHHHHHHHHH
No 450
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=43.34 E-value=44 Score=32.37 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=51.6
Q ss_pred HHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhh---cCCCC-CC-------CCCCh---hHHHHHHhhHHHHHH
Q 041515 47 ILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLI---FNTMT-FG-------TSLPH---SMAEKFKICTDISSA 112 (762)
Q Consensus 47 ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I---~p~~~-l~-------~~lP~---~msaRfr~~~~lA~a 112 (762)
=|...|+++|..+-+ +.|+.=||+.+...-.+||..+ +++.- -| ...|. ....-.++-..+..-
T Consensus 16 eIv~~L~~~~~~~t~--~dl~kPt~e~v~~ly~~~L~~~~g~~~e~~~~~~~~~~~~~~~pe~~~~~i~~l~l~~~~~~~ 93 (146)
T PF03800_consen 16 EIVNCLQECGIPVTE--EDLKKPTPEFVQKLYERFLETFLGISPEDIEQPMFEALESLEYPELHEESIPLLNLFRHLQKF 93 (146)
T ss_dssp HHHHHHHHHT--HHH--HC--G--HHHHHHHHHHHHHHHHT--CGGG--C---TT---S-GGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcCH--HHHcCCCHHHHHHHHHHHHHHHHCcCHHHHhhhhHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence 467889998888743 5888889999877777777644 22210 00 11222 122223333444444
Q ss_pred HHhcCCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515 113 IKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERL 146 (762)
Q Consensus 113 ~k~~Gy~~digy~tfLY~~~~dlr~l~~fLiekL 146 (762)
++..|+. |.++..++-|...-+|+++-.||--+
T Consensus 94 ~~~~gv~-DF~l~Dl~~P~~~R~~~~LSalINF~ 126 (146)
T PF03800_consen 94 LKDCGVP-DFSLSDLLKPDPKRTRRILSALINFA 126 (146)
T ss_dssp HHHTT------HHHHHS--HHHHHHHHHHHHHHH
T ss_pred HHHcCCC-CCCHHHhcCCcHHHHHHHHHHHHHHH
Confidence 5566888 89999999999999999998887543
No 451
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=43.31 E-value=2e+02 Score=37.02 Aligned_cols=28 Identities=18% Similarity=-0.011 Sum_probs=15.7
Q ss_pred hHHHH---HHHHHHHhcccccHHHHHHHHHH
Q 041515 629 VTPTI---VLAEFILFSKTISYKKVLALAIV 656 (762)
Q Consensus 629 s~P~~---vll~~l~lgek~s~~~~lsLlli 656 (762)
++|+. +++..+++|..++....+++++.
T Consensus 903 ~iPlsl~G~~~~l~~~g~~l~~~sl~G~i~l 933 (1044)
T TIGR00915 903 VVPLGIIGALLATSLRGLSNDVYFQVGLLTT 933 (1044)
T ss_pred HHHHHHHHHHHHHHHHCCCccHHHHHHHHHH
Confidence 46653 34455556666666665555443
No 452
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=43.27 E-value=2.3e+02 Score=36.52 Aligned_cols=13 Identities=8% Similarity=-0.061 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHh
Q 041515 712 PVTVFFLLALMPW 724 (762)
Q Consensus 712 p~s~i~Ll~~~~~ 724 (762)
..+++.++|+++.
T Consensus 986 ltti~g~lPl~~~ 998 (1051)
T TIGR00914 986 LVASLGFVPMAIA 998 (1051)
T ss_pred HHHHHHHHHHHhc
Confidence 3344445554443
No 453
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=43.21 E-value=5.9e+02 Score=30.39 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=31.3
Q ss_pred hcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHHHHHHHHHH
Q 041515 641 FSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKILWS 693 (762)
Q Consensus 641 lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~Al~~V~~k 693 (762)
+|--+++....|+..+.+=+.++..+-.++. .|+.+.+++++.+++..+...
T Consensus 180 ~g~~lt~l~~SS~A~i~i~~~l~~~glis~~-~~~alvLGaNlGt~i~a~laa 231 (533)
T COG1283 180 IGALLTALIQSSLAAIGILLSLTSQGLISLE-AALALVLGANLGTTITAVLAA 231 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccchh-HHHHHHHHHhhhchhHHHHHh
Confidence 3444455555555544444444444433433 788889999999888877743
No 454
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.04 E-value=6.2e+02 Score=29.77 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=18.1
Q ss_pred hhhhhhHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 388 KNSRKVDTDIERI-LKETRELQLESNSIQERLHRTYAVVDD 427 (762)
Q Consensus 388 ~nirKQ~~eI~Ki-l~dtr~lqkein~~~~~l~Rtf~v~de 427 (762)
+..+||=+++.+- ..+.-.|..+|.++.+.=.+--..+.+
T Consensus 150 ~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~n 190 (475)
T PRK10361 150 DGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAIN 190 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332 344455666666665544444333333
No 455
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=42.94 E-value=4.3e+02 Score=27.89 Aligned_cols=29 Identities=7% Similarity=0.231 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhccc-cchhhhhhhHHHHH
Q 041515 456 IAEYEKKLAAVASRS-LNVDKLQADVDVIM 484 (762)
Q Consensus 456 i~~le~qi~~~~~k~-~nle~i~~D~~~i~ 484 (762)
..-++.+|+.|.... ..+..+..++.++.
T Consensus 159 ~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 159 ENRLQEKIEKEKNTRESKLSELRSELEEVK 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555533 44444555554444
No 456
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.88 E-value=6.5e+02 Score=30.01 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHH-HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRS-YIERIKEITKNSRKVDTDIERILKETRELQLESNSI 414 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~-Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~ 414 (762)
+.+|-+++.++|+...++..+.+....+.+.......+..-.. --.|..+=++- =|.-=.+.++|--+|..|-=++
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe---~KfRE~RllseYSELEEENIsL 182 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKE---YKFREARLLSEYSELEEENISL 182 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcchH
Confidence 4466666777777777776666666665555554433221111 12233333332 2333345555555544443333
Q ss_pred HHHHH--HHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHH--HHHHHHHHhc
Q 041515 415 QERLH--RTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAE--YEKKLAAVAS 468 (762)
Q Consensus 415 ~~~l~--Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~--le~qi~~~~~ 468 (762)
+-.+. |.=.|-+|=+--+.|+=+---+++..-.+-....++|.| ||+-+++.++
T Consensus 183 QKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ 240 (772)
T KOG0999|consen 183 QKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQ 240 (772)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322 444444444444444433333444444444555566655 4555555555
No 457
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=42.83 E-value=3.4e+02 Score=26.64 Aligned_cols=107 Identities=10% Similarity=0.125 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC---CccC
Q 041515 299 NLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQP---KVAS 375 (762)
Q Consensus 299 ~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~---k~~~ 375 (762)
+|+.+=.+++..=..-+++++..-..+.+...++...+ +.+...++.-....+.++-.+.+..++++++= ....
T Consensus 22 ~i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v---~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~ 98 (146)
T PF08702_consen 22 GIQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYV---KNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETK 98 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hHHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333344444555555443 33344444443333444444445555544321 0000
Q ss_pred hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHH
Q 041515 376 RRSYIERIKEITKNSRKVDTDIERILKETRELQ 408 (762)
Q Consensus 376 R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lq 408 (762)
=..+..+|..+=++++.|..+|.|.-.|+-.++
T Consensus 99 i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~ 131 (146)
T PF08702_consen 99 IINQPSNIRVLQNILRSNRQKIQRLEQDIDQQE 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112445556666666666666666655555443
No 458
>PF14992 TMCO5: TMCO5 family
Probab=42.78 E-value=4.8e+02 Score=28.45 Aligned_cols=27 Identities=4% Similarity=0.373 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETREL 407 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~l 407 (762)
-+.--+..+.-+|+.+|.|+.+|-.++
T Consensus 116 ~~lqql~~~~~~qE~ei~kve~d~~~v 142 (280)
T PF14992_consen 116 NKLQQLLESCASQEKEIAKVEDDYQQV 142 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556777889999999998866554
No 459
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=42.68 E-value=4.3e+02 Score=27.86 Aligned_cols=111 Identities=13% Similarity=0.067 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHH----HHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHH--HHH
Q 041515 563 VIHYAVAWILLAIF----KAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTI--VLA 636 (762)
Q Consensus 563 ~~q~l~a~ill~i~----~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~--vll 636 (762)
.+|.+++.++.+.. +.++.... ..+++..+.-.+||.++++.....--......++|...+-+-....|+ +++
T Consensus 69 ~~h~imal~li~~Gi~ti~~W~~~~~-~~s~~t~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~il~ 147 (224)
T PF09930_consen 69 VIHLIMALLLIYAGIYTIKKWKKSGK-DSSRRTFLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILILL 147 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCcccchhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 45666665554433 22221222 223455666788998887655555555556667777666664333332 344
Q ss_pred HHHHhc-ccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHHHHHH
Q 041515 637 EFILFS-KTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINK 689 (762)
Q Consensus 637 ~~l~lg-ek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~Al~~ 689 (762)
+..+++ .+.+....++-++++ .|..+.+.+.+.-+.-.
T Consensus 148 ss~i~r~~~~~~p~~LG~~Mi~---------------~GlyfLl~aliiPn~~~ 186 (224)
T PF09930_consen 148 SSFIFRRLKKPYPIILGNFMIF---------------LGLYFLLSALIIPNYIQ 186 (224)
T ss_pred HHHHHHHhcCCCchHHHHHHHH---------------HHHHHHHHHHHHhhHHH
Confidence 444444 343444455555544 46666666666555443
No 460
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.59 E-value=1.5e+02 Score=30.02 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADL 367 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~ 367 (762)
++++++.+++..+.|+..-.++.+.|.+||
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445555555555554455555555544
No 461
>COG4485 Predicted membrane protein [Function unknown]
Probab=42.41 E-value=1.1e+02 Score=37.33 Aligned_cols=17 Identities=18% Similarity=0.587 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 041515 535 NFVVSVGIILTNKLVMG 551 (762)
Q Consensus 535 ~~v~Sv~ii~~NK~vl~ 551 (762)
||++|+++.+++.+-|+
T Consensus 183 ~y~vsisllfiqNyYFg 199 (858)
T COG4485 183 LYIVSISLLFIQNYYFG 199 (858)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 78888888888877655
No 462
>PRK12705 hypothetical protein; Provisional
Probab=42.41 E-value=6.5e+02 Score=29.85 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHHHHHhccc------cchhhhhhhHH
Q 041515 439 FEQVSEKILATD--RVRREIAEYEKKLAAVASRS------LNVDKLQADVD 481 (762)
Q Consensus 439 ~~~l~~~i~~tg--~~~rei~~le~qi~~~~~k~------~nle~i~~D~~ 481 (762)
-++|++.+++-- ...+-+++.|++...+..+. .-.++...|+.
T Consensus 144 k~~l~~~~~~~~~~e~~~~i~~~e~~~~~~a~~~A~~ii~~aiqr~a~~~~ 194 (508)
T PRK12705 144 RKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASETA 194 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 344554444321 22333555555555544433 23555555553
No 463
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=42.21 E-value=5.2e+02 Score=28.70 Aligned_cols=132 Identities=12% Similarity=0.111 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------hcCCCccC--------hHHHHHHHHHHHhhhhhhH
Q 041515 331 EAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADL--------EKQPKVAS--------RRSYIERIKEITKNSRKVD 394 (762)
Q Consensus 331 e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~--------~~~~k~~~--------R~~Yt~RI~Eiv~nirKQ~ 394 (762)
+...++.++++.-......+..++.|-+.++..-..| ..+|.... --...+.+++=+..|++++
T Consensus 128 ~l~~~~~kyr~~L~~A~~sD~~v~~k~~~~~~~l~lLs~~~~~l~~~lPss~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR 207 (339)
T cd09235 128 PLRAEGSKYRTILDNAVQADKIVREKYESHREGIELLSKPEEELANAIPSASPAKTLQGSEAVQELRQLMEQVETIKAER 207 (339)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777888888888877776643333 23455311 0125566666667777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhc-C-ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 041515 395 TDIERILKETRELQLESNSIQERLHRTYA-----VVDDMIFREA-K-KDQSFEQVSEKILATDRVRREIAEYEKKLAAVA 467 (762)
Q Consensus 395 ~eI~Kil~dtr~lqkein~~~~~l~Rtf~-----v~delif~~a-k-kd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~ 467 (762)
+.+.+-| |.-.. .++.++-..+. .-+++..++- | .|+...+|-+.+.....+..+|++...+.....
T Consensus 208 ~~~~~~L---k~~~d---DI~~~ll~~~~~~~~~~~e~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~ 281 (339)
T cd09235 208 EVIESEL---KSATF---DMKSKFLSALAQDGAINEEAISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFSKEK 281 (339)
T ss_pred HHHHHHH---Hhccc---ccHHHHHHHHHhcCCccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7664444 33322 23333332221 1133334444 3 377788888888899999888888887775443
Q ss_pred c
Q 041515 468 S 468 (762)
Q Consensus 468 ~ 468 (762)
+
T Consensus 282 ~ 282 (339)
T cd09235 282 Q 282 (339)
T ss_pred c
Confidence 3
No 464
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=42.16 E-value=2.3e+02 Score=29.99 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCc--hhHHHH
Q 041515 531 AMTFNFVVSVGIILTNKLVMGQVGFN--FPIFLT 562 (762)
Q Consensus 531 ai~~~~v~Sv~ii~~NK~vl~~~gF~--~Pl~Lt 562 (762)
.-.+|.+.++...+..|+++++.+.+ .|++++
T Consensus 6 ~~~f~l~lTl~~y~~a~~l~~r~~~~~l~PlLv~ 39 (230)
T COG1346 6 SPLFGLLLTLLAYFAAKRLYKRTKSPFLNPLLVA 39 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence 34678888999999999999984433 255554
No 465
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=41.77 E-value=2.2e+02 Score=31.87 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=16.6
Q ss_pred HHHHHhhHHHHHHHHHHHhcC--CCccC
Q 041515 350 LSEIRKREDEYSKLSADLEKQ--PKVAS 375 (762)
Q Consensus 350 ~~e~~~k~e~~~~L~~~~~~~--~k~~~ 375 (762)
.+|+..-+..+.+|+++++.+ |||.|
T Consensus 82 ~~Ei~~~~~~~~~le~~L~~lLlPkDpn 109 (363)
T COG0216 82 EEEIKELEAKIEELEEELKILLLPKDPN 109 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 455555566666666776665 88754
No 466
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=41.75 E-value=4.5e+02 Score=27.81 Aligned_cols=93 Identities=10% Similarity=-0.014 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhhcchhH----HHHHHHhhhHHHHHHHHHHHhcccccHHH-HHHHHHHHHhhheeeecC--ccccHHHHH
Q 041515 604 SFATGLANTSLKHNSVG----FYQMSKIAVTPTIVLAEFILFSKTISYKK-VLALAIVSVGVAVATVTD--LEFNIFGAI 676 (762)
Q Consensus 604 ~l~i~l~N~SL~yvsVs----~~qmlKsas~P~~vll~~l~lgek~s~~~-~lsLlli~~GV~la~~~d--~~fs~~G~i 676 (762)
..+..++.....|...+ ..+.+-.+...|.+ .+.+-+..|-+... .-.+.+...|+++++.-. ...+..+.+
T Consensus 96 l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~-ls~~g~~tk~Dls~l~~~l~~aligLiiasvvn~Fl~s~~l~~~ 174 (233)
T COG0670 96 LVGLTLSPILLVYAAISGGDAIAAAFGITALVFGA-LSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFLGSSALHLA 174 (233)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 34444555555665555 55555432222332 22222222222221 122333344444433211 233467777
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 041515 677 IAVAWIIPSAINKILWSNLQQ 697 (762)
Q Consensus 677 lalls~l~~Al~~V~~kkllk 697 (762)
...++++.++.+..+--...+
T Consensus 175 IS~lgvlifsgli~yDtq~I~ 195 (233)
T COG0670 175 ISVLGVLIFSGLIAYDTQNIK 195 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877776544333
No 467
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=41.72 E-value=26 Score=23.66 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=15.4
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 041515 448 ATDRVRREIAEYEKKLAA 465 (762)
Q Consensus 448 ~tg~~~rei~~le~qi~~ 465 (762)
+....++.|+|||.|+..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567889999999999875
No 468
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=41.49 E-value=99 Score=35.59 Aligned_cols=71 Identities=25% Similarity=0.286 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 041515 298 HNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEK 369 (762)
Q Consensus 298 ~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~ 369 (762)
.++.+|..+|.+.+..+ +..|.-+.+++........+-++.+++.++.+++.++++..++...++++++..
T Consensus 28 d~i~~ld~~~r~l~~~~-~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 28 DELLELDEERRELQTEL-EELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.40 E-value=5.2e+02 Score=28.43 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHH
Q 041515 298 HNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELE-RQSVLSEIRKREDEYSKLSA 365 (762)
Q Consensus 298 ~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~-~~~~~~e~~~k~e~~~~L~~ 365 (762)
+-+.+|+.+=|+.|.--.++..+-+.+++..+.|...|.+++++.+++ .+.++++.+.-+|....+..
T Consensus 330 e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~ 398 (406)
T KOG3859|consen 330 EFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQR 398 (406)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666676666666665556666666777777788877764 33444445545555544433
No 470
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.36 E-value=2.1e+02 Score=30.24 Aligned_cols=32 Identities=6% Similarity=0.193 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhh
Q 041515 357 EDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKV 393 (762)
Q Consensus 357 ~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ 393 (762)
++.+++....|++ .|..|..+-..+-......
T Consensus 167 ~~e~~~~ve~y~~-----~r~~we~~m~~~~~~~Q~~ 198 (233)
T cd07649 167 GDDLMRCVDLYNQ-----AQSKWFEEMVTTSLELERL 198 (233)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3444444444442 4566665554444444333
No 471
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.33 E-value=3.2e+02 Score=25.98 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 041515 338 KLREVELERQSV 349 (762)
Q Consensus 338 ~ik~~~~~~~~~ 349 (762)
++.+++.++.++
T Consensus 97 ~veEL~~Dv~Dl 108 (120)
T PF12325_consen 97 EVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 472
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=41.22 E-value=4.4e+02 Score=32.62 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=44.5
Q ss_pred HhhhhhhhcCCCCCCCCCChhHHHH--------HHhhHHHHHHHHhc------------CCCCCCcccc--cccCChHHH
Q 041515 78 CGQSLNLIFNTMTFGTSLPHSMAEK--------FKICTDISSAIKNL------------GYIGDISYYK--FLYPSEEDL 135 (762)
Q Consensus 78 ~~~cl~~I~p~~~l~~~lP~~msaR--------fr~~~~lA~a~k~~------------Gy~~digy~t--fLY~~~~dl 135 (762)
.+..+.++|...+||..=-...++| ||+++-=-+.+|.. +|-|-+-|.| |.=-|-+-|
T Consensus 523 ~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~L 602 (1259)
T KOG0163|consen 523 SNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDAL 602 (1259)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHH
Confidence 3455566677777877654555555 45554444444332 4667777777 888888888
Q ss_pred HHHHHHHHHHh
Q 041515 136 YKLIRFLVERL 146 (762)
Q Consensus 136 r~l~~fLiekL 146 (762)
++-+=-|||.-
T Consensus 603 H~SLe~Li~es 613 (1259)
T KOG0163|consen 603 HNSLEGLIEES 613 (1259)
T ss_pred HHHHHHHHHhc
Confidence 88887777753
No 473
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=41.07 E-value=1.8e+02 Score=33.34 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041515 740 SSAIFISALLGFLLQWSG 757 (762)
Q Consensus 740 ~~~i~lsgvlgf~ln~s~ 757 (762)
+..+++++++++++++.-
T Consensus 152 ~~~I~iGv~i~l~vsi~I 169 (406)
T PF11744_consen 152 LLTIVIGVAICLLVSIFI 169 (406)
T ss_pred HHHHHHHHHHHHHHHHhe
Confidence 445556666666665543
No 474
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=40.90 E-value=5e+02 Score=28.10 Aligned_cols=21 Identities=24% Similarity=0.060 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041515 405 RELQLESNSIQERLHRTYAVV 425 (762)
Q Consensus 405 r~lqkein~~~~~l~Rtf~v~ 425 (762)
.+.|.+++...|=+.|.-+.-
T Consensus 232 a~~~~~~~~~~G~l~R~~Al~ 252 (301)
T PF14362_consen 232 AEFQAIISANDGFLARLEALW 252 (301)
T ss_pred HHHhHhhccCCCHHHHHHHHH
Confidence 344555577788888876543
No 475
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=40.67 E-value=5.6e+02 Score=28.63 Aligned_cols=24 Identities=4% Similarity=0.099 Sum_probs=12.4
Q ss_pred HHhhhhhhHHhHHHHHHHHHHHHH
Q 041515 386 ITKNSRKVDTDIERILKETRELQL 409 (762)
Q Consensus 386 iv~nirKQ~~eI~Kil~dtr~lqk 409 (762)
..+.|.+|+..+..+....+.+++
T Consensus 37 C~ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 37 CSSSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566666655444444444443
No 476
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=40.52 E-value=2.5e+02 Score=26.97 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKR 356 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k 356 (762)
-..++++|+..++..+..+..|.+.|-++|=-=.++.++|--.++.+- |.++++...+-+|+..+
T Consensus 58 Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQP----------K~IEkQte~LteEL~kk 122 (126)
T PF07028_consen 58 QRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQP----------KFIEKQTEALTEELTKK 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999998876444666777776555332 44666666666666654
No 477
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=40.47 E-value=6.6e+02 Score=29.33 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHH
Q 041515 593 FSSLFALGVVMSFAT 607 (762)
Q Consensus 593 ~~~l~plgl~~~l~i 607 (762)
.+.+..+|++.++++
T Consensus 55 tr~It~~AMLIALsV 69 (477)
T PRK12821 55 VINITTIAMIIAVAV 69 (477)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666777666664
No 478
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=40.45 E-value=5e+02 Score=30.30 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred hhhcchhHHHHHHHhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecCccccHHHHHHHHHHHHHHHHHHHH
Q 041515 613 SLKHNSVGFYQMSKIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTDLEFNIFGAIIAVAWIIPSAINKIL 691 (762)
Q Consensus 613 SL~yvsVs~~qmlKsas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d~~fs~~G~ilalls~l~~Al~~V~ 691 (762)
|+--...+...++-..+.|++ .+.+ .-+.|-.+..+.+++.++....+...++.+. +.|.++.+++++++....++
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD--~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~-~~~~~l~iia~v~~~~~~vf 146 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIAD--YGGRRKRFLLIFTLLGVLATALLWFVSPGQW-WLALVLFIIANVGYEASNVF 146 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--ccccchHHHHHHHHHHHHHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhh-------hc--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChh
Q 041515 692 WSNLQ-------QQ--------------------------GNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLN 738 (762)
Q Consensus 692 ~kkll-------k~--------------------------~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~ 738 (762)
..-.+ +. .+++++...+-..--.+++++.+.++.......+..++..
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 041515 739 NSSAIFISALLGFLLQWSGALAL 761 (762)
Q Consensus 739 ~~~~i~lsgvlgf~ln~s~fl~I 761 (762)
..+.++|+.=.+..+-.|+.+
T Consensus 227 --~~~~~~a~ww~vfsiP~~~~~ 247 (477)
T PF11700_consen 227 --VAFLIVALWWLVFSIPLFLWL 247 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHhC
No 479
>PRK07668 hypothetical protein; Validated
Probab=40.38 E-value=1.1e+02 Score=32.82 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhccccchhhhhh-hHHHHHHHhh
Q 041515 457 AEYEKKLAAVASRSLNVDKLQA-DVDVIMKENE 488 (762)
Q Consensus 457 ~~le~qi~~~~~k~~nle~i~~-D~~~i~~en~ 488 (762)
.|+++.+-+.+++.++-+.+-+ |-++.-+|-.
T Consensus 32 ~Ei~~hLlEgQk~GkTA~~IfG~sPk~yA~EL~ 64 (254)
T PRK07668 32 EDAELHLIEGEKDGKTVEDIFGDSPKEYANELV 64 (254)
T ss_pred HHHHHHHHHHHHcCCcHHHHhCCCHHHHHHHHh
Confidence 3444455444444477777766 5666555543
No 480
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.37 E-value=6.4e+02 Score=29.15 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=13.5
Q ss_pred cchhhhhhhHHHHHHHhhhhh
Q 041515 471 LNVDKLQADVDVIMKENEFLE 491 (762)
Q Consensus 471 ~nle~i~~D~~~i~~en~~~~ 491 (762)
.-..-+.+.++.+++.|..|.
T Consensus 403 aRe~eleqevkrLrq~nr~l~ 423 (502)
T KOG0982|consen 403 AREIELEQEVKRLRQPNRILS 423 (502)
T ss_pred HHHHHHHHHHHHhccccchhh
Confidence 445556667777777776553
No 481
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.25 E-value=1.3e+02 Score=29.65 Aligned_cols=57 Identities=12% Similarity=-0.009 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 041515 672 IFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPG 729 (762)
Q Consensus 672 ~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~ 729 (762)
++.+++++++.++..++.....++-+..+ +|.--.+.+..++.+.++++..+.++.+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~ 60 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHP 60 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677788888888888887777755333 6777777777787888877776666543
No 482
>PLN02678 seryl-tRNA synthetase
Probab=40.10 E-value=1.3e+02 Score=34.97 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHHh--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 041515 280 HPTEFYLEQLDEQVGAKK--HNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKRE 357 (762)
Q Consensus 280 ~~~~~n~~kL~~~~~~~~--~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~ 357 (762)
..++...+.|...-.... .++.+|..+|.+....+ ++.+.-+.+++......+..-++..++.++++++.+++...+
T Consensus 13 ~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~-e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le 91 (448)
T PLN02678 13 GDPELIRESQRRRFASVELVDEVIALDKEWRQRQFEL-DSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKE 91 (448)
T ss_pred cCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhcC
Q 041515 358 DEYSKLSADLEKQ 370 (762)
Q Consensus 358 e~~~~L~~~~~~~ 370 (762)
+..+++++++..+
T Consensus 92 ~~~~~~~~~l~~~ 104 (448)
T PLN02678 92 AEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHH
No 483
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=39.89 E-value=4.6e+02 Score=27.49 Aligned_cols=50 Identities=12% Similarity=0.243 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHcCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Q 041515 560 FLTVIHYAVAWILLAIF--KAFSIIPVSPPAITTPFSSLFALGVVMSFATGLANTS 613 (762)
Q Consensus 560 ~Lt~~q~l~a~ill~i~--~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~l~N~S 613 (762)
....++..++.++..+. ...+..|. ++..++..+|-+++.++........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~y~~~p~----~~~~~~~~~~Ga~~~~~~~~~~~~~ 211 (260)
T PF03631_consen 160 LWNLIRWLVSFLLLFLLFFLLYRFLPN----RRVRWRAALPGALFAAVLWFLLSYG 211 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCCCcchHHHHHHHHHHHHHHHHH
Confidence 46667776544443322 12233443 2334556666666655444433333
No 484
>PRK04654 sec-independent translocase; Provisional
Probab=39.60 E-value=1.3e+02 Score=31.28 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=15.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 041515 289 LDEQVGAKKHNLVELELQWDALKESLEEK 317 (762)
Q Consensus 289 L~~~~~~~~~~l~~L~~qWe~~r~pl~~~ 317 (762)
|=+......+-+.++.+.|...+..+.++
T Consensus 25 LPe~aRtlGk~irk~R~~~~~vk~El~~E 53 (214)
T PRK04654 25 LPKAARFAGLWVRRARMQWDSVKQELERE 53 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444555556677766666555
No 485
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=39.49 E-value=76 Score=29.25 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhhhhhh
Q 041515 436 DQSFEQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENEFLEQ 492 (762)
Q Consensus 436 d~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~~~~s 492 (762)
.+...++.+.|+..|.- |.+|+.++. ...+.|+.|.+-+..|.++-+.+||
T Consensus 52 geqI~kL~e~V~~QGEq---Ikel~~e~k---~qgktL~~I~~~L~~inkRLD~~E~ 102 (102)
T PF01519_consen 52 GEQINKLTEKVDKQGEQ---IKELQVEQK---AQGKTLQLILKTLQSINKRLDKMES 102 (102)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33455666777776654 777777777 2227789999999999998886654
No 486
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.31 E-value=3.3e+02 Score=26.89 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 339 LREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 339 ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
+..+..++.++.++++.-+...+.|..++..+.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444444433
No 487
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=39.22 E-value=6.7e+02 Score=29.11 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhccc------cchhhhhhhHHHHHHHhh
Q 041515 451 RVRREIAEYEKKLAAVASRS------LNVDKLQADVDVIMKENE 488 (762)
Q Consensus 451 ~~~rei~~le~qi~~~~~k~------~nle~i~~D~~~i~~en~ 488 (762)
.++++|.-||.||+.+..|- .++....++|..+.-|.+
T Consensus 318 ~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~e 361 (434)
T PRK15178 318 RLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSE 361 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Confidence 34566777777777766544 145556666666555444
No 488
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=39.17 E-value=1.9e+02 Score=26.93 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHH
Q 041515 385 EITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRV 452 (762)
Q Consensus 385 Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~ 452 (762)
|+++|++||-.=|+=. . +...+++.++++.--.++|++..+-.+..-+ ++.+.+.|.-
T Consensus 27 eqik~~ql~s~vi~G~----n--~~l~k~L~eki~~Fh~ILDd~~~~l~~sk~~----v~~m~e~~q~ 84 (105)
T PF11214_consen 27 EQIKNNQLQSNVITGF----N--NQLQKQLSEKIHKFHSILDDTESKLNDSKWY----VDTMVELKQK 84 (105)
T ss_pred HHHHHHhhhhhhhccc----c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 8999999997655322 1 1227888999999999999998766554433 4444444544
No 489
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=39.12 E-value=5.4e+02 Score=27.98 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
++....++...+.+..|++.|+....=|+..+.
T Consensus 73 ~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~ 105 (307)
T PF10481_consen 73 MESCENLEKTRQKLSHDLQVKESQVNFLEGQLN 105 (307)
T ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 334445555666778888888888877777666
No 490
>PRK09579 multidrug efflux protein; Reviewed
Probab=39.11 E-value=2.1e+02 Score=36.87 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=15.1
Q ss_pred CChhHHHHHHhh-HHHHHHHHhc
Q 041515 95 LPHSMAEKFKIC-TDISSAIKNL 116 (762)
Q Consensus 95 lP~~msaRfr~~-~~lA~a~k~~ 116 (762)
+-|.-.+++.+. .+++++++..
T Consensus 188 vd~~kl~~~gls~~dV~~al~~~ 210 (1017)
T PRK09579 188 LDPVKLAGFGLSAGDVTQAVRRY 210 (1017)
T ss_pred eCHHHHHHcCCCHHHHHHHHHHh
Confidence 455666777766 6788888764
No 491
>PRK11539 ComEC family competence protein; Provisional
Probab=39.11 E-value=4.8e+02 Score=32.40 Aligned_cols=27 Identities=19% Similarity=0.157 Sum_probs=15.7
Q ss_pred HHhhccCCchhHHHHHHHHHHHHHHHH
Q 041515 548 LVMGQVGFNFPIFLTVIHYAVAWILLA 574 (762)
Q Consensus 548 ~vl~~~gF~~Pl~Lt~~q~l~a~ill~ 574 (762)
-.|...|-..=+.++.+|..+.+.+.+
T Consensus 218 ~~~~~tGl~HLlAISGlHi~lv~~~~~ 244 (755)
T PRK11539 218 NLLRDTGTAHLMAISGLHIAFAALLGW 244 (755)
T ss_pred HHHHHhCHHHHHHHhhHHHHHHHHHHH
Confidence 334444555566677777777554444
No 492
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=38.91 E-value=2.8e+02 Score=31.94 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhHHH
Q 041515 299 NLVELELQWDALKESL 314 (762)
Q Consensus 299 ~l~~L~~qWe~~r~pl 314 (762)
....+.++|+.|.+=+
T Consensus 151 e~~~~~~e~~~Y~~~l 166 (447)
T KOG2751|consen 151 EVEDAEDEVDTYKACL 166 (447)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666777666544
No 493
>PLN02400 cellulose synthase
Probab=38.91 E-value=3.7e+02 Score=34.59 Aligned_cols=9 Identities=11% Similarity=0.630 Sum_probs=5.1
Q ss_pred HHHHHHHHh
Q 041515 138 LIRFLVERL 146 (762)
Q Consensus 138 l~~fLiekL 146 (762)
.|+||+..+
T Consensus 319 af~Wll~q~ 327 (1085)
T PLN02400 319 ALSWLLDQF 327 (1085)
T ss_pred HHHHHHccC
Confidence 455565555
No 494
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=38.72 E-value=8.3e+02 Score=30.00 Aligned_cols=178 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 041515 529 VVAMTFNFVVSVGIILTNKLVMGQVGFNFPIFLTVIHYAVAWILLAIFKAFSIIPVSPPAITTPFSSLFALGVVMSFATG 608 (762)
Q Consensus 529 ~~ai~~~~v~Sv~ii~~NK~vl~~~gF~~Pl~Lt~~q~l~a~ill~i~~~~~~~~~~~~~~~~~~~~l~plgl~~~l~i~ 608 (762)
...-.+|++..+.++|. +.....+-+ +-.---...+...+....+..++.++ .........++|..+...+.+.
T Consensus 276 ~~~~~~~~v~~li~lf~--~y~~~~~~~-~~~~~~~l~~~~~l~i~~l~l~~iv~---~~~~~~~~~l~p~a~~~~l~~~ 349 (700)
T COG1480 276 PLLGLLILVIFLILLFA--LYERRTKSP-LKLRNSLLLLYLSLAILTLSLLRIVG---YFNYSASGLLVPPALGPMLLIL 349 (700)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhccC-HHhhhhHHHHHHHHHHHHHHHHhccc---cccchhhhhccchHHHHHHHHH
Q ss_pred HHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHh-hheeeecC----ccccHHHHHHHHHHHH
Q 041515 609 LANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYKKVLALAIVSVG-VAVATVTD----LEFNIFGAIIAVAWII 683 (762)
Q Consensus 609 l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~~~lsLlli~~G-V~la~~~d----~~fs~~G~ilalls~l 683 (762)
+-+..+...+.++..+.-. +.+| -+...++++...+.| .+++..+. ...-+.|+++++++.+
T Consensus 350 lv~~r~~i~~s~~~~i~~~-----------~~~~--~~~~~~~~~~~l~s~~~~~~~l~~~s~rs~i~~~g~~~~~~~m~ 416 (700)
T COG1480 350 LVFLRIAIFSSSMIAIALL-----------YLFG--GSYNSEIALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNML 416 (700)
T ss_pred HHHhhHHHHHHHHHHHHHH-----------HHhc--cchhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Q 041515 684 PSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLD 726 (762)
Q Consensus 684 ~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e 726 (762)
..+.- ++.--...-...-.....+...+++.++.+-++|++|
T Consensus 417 ~~l~l-~~~~~~~~~~~~~~~~~~flsGl~s~il~iGllP~fE 458 (700)
T COG1480 417 LLLSL-IFAFTLSWYDALQDAIFAFLSGLLSGILVLGLLPYFE 458 (700)
T ss_pred HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=38.71 E-value=2.2e+02 Score=25.06 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHH
Q 041515 386 ITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREI 456 (762)
Q Consensus 386 iv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei 456 (762)
++..++|-+.-+..+-.-.+.+++|+..+...++.+-.-+.++.=.=-.|.+....+++.+.++|..-+++
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 496
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=38.71 E-value=5.3e+02 Score=27.76 Aligned_cols=149 Identities=11% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhhhHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhhheeeec
Q 041515 589 ITTPFSSLFALGVVMSFATGLANTSLKHNSVGFYQMSKIAVTPTIVLAEFILFS--KTISYKKVLALAIVSVGVAVATVT 666 (762)
Q Consensus 589 ~~~~~~~l~plgl~~~l~i~l~N~SL~yvsVs~~qmlKsas~P~~vll~~l~lg--ek~s~~~~lsLlli~~GV~la~~~ 666 (762)
++..++-++|+++-...++.+...-+.|.=-.......++..=+++.-...+++ ++.++..++.+++.++-+.+.+..
T Consensus 50 ~~~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~~~ 129 (257)
T PF04018_consen 50 KKINLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLSFL 129 (257)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHc
Q ss_pred Ccc-c---cHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCChhHHHH
Q 041515 667 DLE-F---NIFGAIIAVAWIIPSAINKILWSNLQQQGNWTALALMWKTTPVTVFFLLALMPWLDPPGVLFYKWNLNNSSA 742 (762)
Q Consensus 667 d~~-f---s~~G~ilalls~l~~Al~~V~~kkllk~~~lns~~Ll~y~~p~s~i~Ll~~~~~~e~~~v~~~~w~~~~~~~ 742 (762)
... . +...+.+.+++.+..+.-.++ =++|+--++.......-+.-.+-.... -+...+..
T Consensus 130 ~~~~~~~~~~~~~~~lf~~G~ia~~AMIl-------PGiSGS~iLlilG~Y~~vl~ai~~~~~---------~~~~~L~~ 193 (257)
T PF04018_consen 130 SSATQSSLSNPSYLYLFLAGAIAACAMIL-------PGISGSFILLILGLYEPVLSAISDLID---------SNIPVLIP 193 (257)
T ss_pred cccchhccCcchHHHHHHHHHHHHHHHhc-------CCCcHHHHHHHHHhHHHHHHHHHHhhh---------hhhHHHHH
Q ss_pred HHHHHHHHHHH
Q 041515 743 IFISALLGFLL 753 (762)
Q Consensus 743 i~lsgvlgf~l 753 (762)
+++++++|.+.
T Consensus 194 f~~G~~~Gi~~ 204 (257)
T PF04018_consen 194 FGIGVVIGILL 204 (257)
T ss_pred HHHHHHHHHHH
No 497
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=38.50 E-value=5.4e+02 Score=27.74 Aligned_cols=148 Identities=20% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhcccCcHHHHHHHHH--------HHHHhcCCCCChhHHHH--HHHHHHHHHhhHHHHHHHHHHHhh--
Q 041515 244 DESLMEAVTAKTSELCDPEEEYQLLKA--------AAEMAFDDSHPTEFYLE--QLDEQVGAKKHNLVELELQWDALK-- 311 (762)
Q Consensus 244 ~~~l~~~~~~~~~~~~e~e~~~~~~~~--------~~e~l~d~~~~~~~n~~--kL~~~~~~~~~~l~~L~~qWe~~r-- 311 (762)
...+.-.+..++.+.+|...+++-++. +-..|.| |.-|+. +|+..+++.+.++.+++++--..+
T Consensus 131 E~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD----PAinl~F~rlK~ele~tk~Klee~QnelsAwkFT 206 (330)
T KOG2991|consen 131 ENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD----PAINLFFLRLKGELEQTKDKLEEAQNELSAWKFT 206 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC----hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeec
Q ss_pred ------HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 041515 312 ------ESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKE 385 (762)
Q Consensus 312 ------~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~E 385 (762)
.-|+.+-|.|.++...--.-++.= ++-+++-|+..-+-.-++|+...+ |
T Consensus 207 PdS~tGK~LMAKCR~L~qENeElG~q~s~G---------ria~Le~eLAmQKs~seElkssq~----------------e 261 (330)
T KOG2991|consen 207 PDSKTGKMLMAKCRTLQQENEELGHQASEG---------RIAELEIELAMQKSQSEELKSSQE----------------E 261 (330)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhcc---------cHHHHHHHHHHHHhhHHHHHHhHH----------------H
Q ss_pred HHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 386 ITKNSRKVDTDIERILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 386 iv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R 420 (762)
+-+.+..-++|.+.+.+-+--||.++......+.|
T Consensus 262 L~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 262 LYDFMEELDEDVEGMQSTILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
No 498
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=38.22 E-value=2e+02 Score=31.19 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 041515 265 YQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVEL 344 (762)
Q Consensus 265 ~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~ 344 (762)
+|+|+-++.-|...++..++-+..=+..|+..+..|..+...|-+-.=-=.|--..|||+ -.+||.+++
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEA-----------RkEIkQLkQ 131 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEA-----------RKEIKQLKQ 131 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 041515 345 ERQSVLSEIRKREDEYSK 362 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~ 362 (762)
-++-+..-+-.|+.=++|
T Consensus 132 vieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 132 VIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHhhhchhhhhHHH
No 499
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=38.11 E-value=4.1e+02 Score=29.33 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHH-----------hhhhhhHH
Q 041515 333 QAKLLKLREVEL------ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEIT-----------KNSRKVDT 395 (762)
Q Consensus 333 ~~k~~~ik~~~~------~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv-----------~nirKQ~~ 395 (762)
..++.++-+.|. +++-..+.++.--..+..|..++...|. =..--+||.++- ....-++-
T Consensus 139 ~~~v~eVI~~RN~~MHS~emkvs~~wm~~~~~~i~nll~~f~~ipe---~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~ 215 (307)
T PF15112_consen 139 RKKVREVIKCRNEIMHSSEMKVSSQWMRDFQMKIQNLLNEFRNIPE---IVAAGSRIEQLLTSDWAVHIPEEDQRDGCES 215 (307)
T ss_pred HHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHhccChH---HHHHHHHHHHHHhhhhhhcCchhhccchhhh
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc----c
Q 041515 396 DIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILATDRVRREIAEYEKKLAAVASRS----L 471 (762)
Q Consensus 396 eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~k~----~ 471 (762)
++.-+++.-..+|-|..-++++|.+-+.-.++-.--. +++.+.++..+.+.+.=.||......+-++- .
T Consensus 216 ~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~-------ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~ 288 (307)
T PF15112_consen 216 ETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLP-------EEDSKRLEVLKEFLRNNKDLRSNLQEELQKLDSLQT 288 (307)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------hhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhhHHHHHHHhhhh
Q 041515 472 NVDKLQADVDVIMKENEFL 490 (762)
Q Consensus 472 nle~i~~D~~~i~~en~~~ 490 (762)
.+++...|+++++.+...|
T Consensus 289 k~~~~~~~v~~~~~~~~ql 307 (307)
T PF15112_consen 289 KHQKLESDVKELKSQMPQL 307 (307)
T ss_pred HhcchhhhhhHHHhhccCC
No 500
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=38.08 E-value=4.5e+02 Score=28.07 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhh--HHHHHHHHHHHHHHhhchHHHHHHHHHH----HHHHHHHHHHHHHHHhhHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWDALK--ESLEEKKRSLEESLYANELEAQAKLLKL----REVELERQSVLSEIRKRED 358 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe~~r--~pl~~~~~~l~~~~~~~~~e~~~k~~~i----k~~~~~~~~~~~e~~~k~e 358 (762)
++.+|..+|-.... .|..||..|| ..-.+|-..|++++.++-+|-++|-.+. -=++.++-.+....+.+.-
T Consensus 17 ~v~~LhHQvlTLqc---QLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~ 93 (277)
T PF15030_consen 17 RVQQLHHQVLTLQC---QLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNR 93 (277)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhc
Q 041515 359 EYSKLSADLEK 369 (762)
Q Consensus 359 ~~~~L~~~~~~ 369 (762)
++..|.+|+-+
T Consensus 94 Li~~llqel~R 104 (277)
T PF15030_consen 94 LITHLLQELHR 104 (277)
T ss_pred HHHHHHHHHHH
Done!