Query 041515
Match_columns 762
No_of_seqs 268 out of 1427
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:18:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 97.2 0.00042 1.4E-08 65.5 6.7 66 600-666 37-104 (137)
2 3b5d_A Multidrug transporter E 97.2 0.00083 2.8E-08 61.0 8.4 68 599-667 36-105 (110)
3 1i84_S Smooth muscle myosin he 96.8 0.0012 4E-08 82.7 7.0 10 117-126 584-593 (1184)
4 1i84_S Smooth muscle myosin he 95.9 0.0057 2E-07 76.6 5.7 29 286-314 873-901 (1184)
5 1c1g_A Tropomyosin; contractIl 95.8 1.7 5.8E-05 43.2 23.9 17 287-303 79-95 (284)
6 3oja_B Anopheles plasmodium-re 94.5 0.29 1E-05 56.1 13.8 43 381-423 544-586 (597)
7 2dfs_A Myosin-5A; myosin-V, in 94.0 0.44 1.5E-05 59.0 14.7 25 381-405 1019-1043(1080)
8 3ghg_A Fibrinogen alpha chain; 93.6 0.2 6.7E-06 56.0 9.3 103 385-493 50-153 (562)
9 3na7_A HP0958; flagellar bioge 93.5 1.5 5.2E-05 45.2 15.5 32 402-433 157-188 (256)
10 3oja_B Anopheles plasmodium-re 93.4 0.36 1.2E-05 55.4 11.8 26 387-412 557-582 (597)
11 3vkg_A Dynein heavy chain, cyt 92.7 1.9 6.3E-05 58.8 18.2 50 379-428 2033-2082(3245)
12 2dfs_A Myosin-5A; myosin-V, in 92.6 2.6 8.9E-05 52.2 18.4 31 115-146 695-735 (1080)
13 1deq_A Fibrinogen (alpha chain 92.4 1.8 6E-05 46.8 14.2 69 338-418 89-157 (390)
14 3na7_A HP0958; flagellar bioge 92.2 11 0.00039 38.5 20.3 104 316-419 32-135 (256)
15 3oja_A Leucine-rich immune mol 91.7 0.51 1.8E-05 52.8 9.9 54 379-432 411-465 (487)
16 3vkg_A Dynein heavy chain, cyt 90.2 6 0.0002 54.1 19.1 66 312-377 2010-2075(3245)
17 2k48_A Nucleoprotein; viral pr 86.7 3.5 0.00012 36.5 9.0 70 336-406 34-103 (107)
18 3ghg_A Fibrinogen alpha chain; 85.8 1.7 6E-05 48.5 8.3 8 621-628 435-442 (562)
19 1deq_A Fibrinogen (alpha chain 85.6 8 0.00027 41.7 13.0 95 283-389 87-181 (390)
20 3zx6_A HAMP, methyl-accepting 84.2 46 0.0016 35.3 22.0 58 380-437 131-198 (341)
21 2v71_A Nuclear distribution pr 82.8 38 0.0013 33.3 18.2 33 455-488 145-178 (189)
22 1vcs_A Vesicle transport throu 82.6 4.1 0.00014 36.1 8.0 55 345-400 39-93 (102)
23 2ch7_A Methyl-accepting chemot 81.8 50 0.0017 33.9 21.6 82 381-462 110-209 (309)
24 3i00_A HIP-I, huntingtin-inter 81.2 11 0.00039 34.3 10.5 25 346-370 94-118 (120)
25 3u59_A Tropomyosin beta chain; 80.9 10 0.00035 33.4 9.9 73 294-370 5-77 (101)
26 2qyw_A Vesicle transport throu 80.5 11 0.00037 33.3 9.9 51 345-396 50-100 (102)
27 3hnw_A Uncharacterized protein 80.5 27 0.00093 32.5 13.1 34 282-315 26-61 (138)
28 3mq7_A Bone marrow stromal ant 80.1 22 0.00074 32.1 11.5 75 289-370 30-104 (121)
29 3u1c_A Tropomyosin alpha-1 cha 79.3 12 0.00043 32.9 9.9 73 293-369 4-76 (101)
30 2ic6_A Nucleocapsid protein; h 79.1 7.2 0.00025 32.9 7.6 70 336-406 4-73 (78)
31 1m1j_A Fibrinogen alpha subuni 77.6 16 0.00055 40.3 11.9 68 298-368 50-117 (491)
32 3nmd_A CGMP dependent protein 76.6 7.1 0.00024 32.4 6.8 46 318-370 21-66 (72)
33 2xs1_A Programmed cell death 6 76.2 1.3E+02 0.0043 35.3 27.3 130 333-468 495-647 (704)
34 3onj_A T-snare VTI1; helix, HA 75.1 13 0.00046 32.4 8.8 58 345-403 35-95 (97)
35 1m1j_A Fibrinogen alpha subuni 74.8 38 0.0013 37.4 13.9 24 381-404 132-155 (491)
36 3o0z_A RHO-associated protein 74.5 63 0.0022 31.1 18.7 24 340-363 93-116 (168)
37 3mq9_A Bone marrow stromal ant 73.1 38 0.0013 37.3 14.1 57 268-325 357-413 (471)
38 2ic9_A Nucleocapsid protein; h 72.7 12 0.00039 32.8 7.5 73 336-409 4-76 (96)
39 2igp_A Retinoblastoma-associat 72.1 9.9 0.00034 34.7 7.4 91 47-146 22-116 (120)
40 4fi5_A Nucleoprotein; structur 71.8 14 0.00047 33.1 7.9 73 338-411 23-95 (113)
41 2zqm_A Prefoldin beta subunit 71.5 53 0.0018 28.9 13.8 43 331-373 7-52 (117)
42 3haj_A Human pacsin2 F-BAR; pa 69.2 1.3E+02 0.0045 33.3 17.6 55 338-397 186-240 (486)
43 1m1j_B Fibrinogen beta chain; 68.7 78 0.0027 35.3 15.1 27 342-368 126-152 (464)
44 3hhm_B NISH2 P85alpha; PI3KCA, 67.5 89 0.003 33.8 15.0 40 379-418 210-249 (373)
45 2xs1_A Programmed cell death 6 65.8 2E+02 0.0068 33.6 18.8 32 283-314 495-526 (704)
46 3oja_A Leucine-rich immune mol 65.7 58 0.002 35.9 13.7 21 283-303 338-358 (487)
47 1m1j_C Fibrinogen gamma chain; 65.4 60 0.002 35.7 13.2 13 456-468 121-133 (409)
48 3etw_A Adhesin A; antiparallel 64.4 33 0.0011 31.3 9.0 36 346-381 36-71 (119)
49 1m1j_B Fibrinogen beta chain; 63.3 37 0.0013 37.9 11.2 40 283-322 120-159 (464)
50 3ghg_C Fibrinogen gamma chain; 61.4 1.6E+02 0.0055 32.3 15.6 78 338-415 39-118 (411)
51 3etw_A Adhesin A; antiparallel 61.1 82 0.0028 28.6 11.0 37 333-369 40-82 (119)
52 1ic2_A Tropomyosin alpha chain 60.0 69 0.0024 26.8 9.9 73 296-372 4-76 (81)
53 1ik9_A DNA repair protein XRCC 59.6 65 0.0022 32.2 11.2 23 330-352 185-208 (213)
54 1l8d_A DNA double-strand break 58.8 90 0.0031 27.3 11.0 46 374-419 57-102 (112)
55 1fxk_A Prefoldin; archaeal pro 58.0 89 0.003 26.9 10.8 80 336-418 7-95 (107)
56 3s9g_A Protein hexim1; cyclin 56.1 67 0.0023 28.1 9.0 58 311-368 32-89 (104)
57 3htk_A Structural maintenance 55.7 48 0.0016 25.9 7.7 16 348-363 37-52 (60)
58 2v4h_A NF-kappa-B essential mo 54.6 1.2E+02 0.0041 27.1 11.7 18 285-302 25-42 (110)
59 3uul_A Utrophin; spectrin repe 54.4 49 0.0017 28.6 8.5 29 298-326 85-113 (118)
60 2i1j_A Moesin; FERM, coiled-co 53.9 13 0.00046 42.6 5.8 39 382-420 413-451 (575)
61 3ajm_A Programmed cell death p 53.6 1.3E+02 0.0046 29.8 12.0 105 354-458 94-203 (213)
62 2avr_X Adhesion A; antiparalle 53.3 1.3E+02 0.0045 27.2 14.8 23 388-410 85-107 (119)
63 3caz_A BAR protein; thermo-aci 51.9 1.8E+02 0.0061 28.4 15.6 119 286-404 27-190 (294)
64 2jee_A YIIU; FTSZ, septum, coi 51.5 1.1E+02 0.0038 25.9 11.3 22 284-305 6-27 (81)
65 3uun_A Dystrophin; triple heli 51.3 46 0.0016 28.7 7.8 30 297-326 84-113 (119)
66 1x79_B RAB GTPase binding effe 51.0 1.4E+02 0.0047 26.8 10.9 35 289-323 18-52 (112)
67 1fio_A SSO1 protein; four heli 50.4 1.8E+02 0.006 27.8 12.9 12 453-464 168-179 (196)
68 3o0z_A RHO-associated protein 50.1 1.8E+02 0.0062 27.9 17.6 32 382-413 98-129 (168)
69 1d7m_A Cortexillin I; coiled-c 50.0 1.1E+02 0.0037 26.3 9.2 40 311-350 20-59 (101)
70 1pw4_A Glycerol-3-phosphate tr 50.0 2.4E+02 0.0082 29.3 20.3 27 545-571 174-201 (451)
71 1wle_A Seryl-tRNA synthetase; 49.3 1E+02 0.0035 34.7 11.9 42 331-372 117-158 (501)
72 3s84_A Apolipoprotein A-IV; fo 48.8 2.4E+02 0.0083 29.0 22.1 10 472-481 224-233 (273)
73 2l5g_B Putative uncharacterize 48.8 33 0.0011 25.4 5.0 34 385-418 6-39 (42)
74 3a7p_A Autophagy protein 16; c 46.6 1.9E+02 0.0066 27.2 11.8 25 285-309 69-93 (152)
75 2ocy_A RAB guanine nucleotide 46.3 2E+02 0.0068 27.3 15.5 126 309-468 13-143 (154)
76 1lq7_A Alpha3W; three helix bu 46.2 34 0.0012 26.5 5.0 30 285-314 10-41 (67)
77 1u4q_A Spectrin alpha chain, b 45.8 2.5E+02 0.0087 28.4 16.9 151 244-406 144-315 (322)
78 2efl_A Formin-binding protein 45.0 2.6E+02 0.0088 28.2 16.9 12 477-488 267-278 (305)
79 2i1j_A Moesin; FERM, coiled-co 44.1 47 0.0016 38.1 8.3 44 440-488 504-547 (575)
80 3qne_A Seryl-tRNA synthetase, 43.7 72 0.0025 35.8 9.5 40 391-430 67-106 (485)
81 3qh9_A Liprin-beta-2; coiled-c 43.7 1.3E+02 0.0044 25.4 8.6 56 313-368 23-78 (81)
82 2ke4_A CDC42-interacting prote 43.4 1.2E+02 0.0041 26.5 8.9 67 340-407 18-88 (98)
83 1ses_A Seryl-tRNA synthetase; 43.0 1.1E+02 0.0038 33.5 10.8 41 332-372 66-106 (421)
84 2efr_A General control protein 43.0 2.2E+02 0.0076 26.9 18.9 40 379-418 75-114 (155)
85 2dq0_A Seryl-tRNA synthetase; 42.6 75 0.0026 35.3 9.4 27 396-422 70-96 (455)
86 2dq0_A Seryl-tRNA synthetase; 42.1 54 0.0019 36.4 8.2 38 335-372 74-111 (455)
87 3bas_A Myosin heavy chain, str 41.9 1E+02 0.0036 26.2 8.2 27 380-406 58-84 (89)
88 3nmd_A CGMP dependent protein 41.8 79 0.0027 26.2 6.9 31 338-368 20-50 (72)
89 3hd6_A Ammonium transporter RH 41.6 4.2E+02 0.014 29.7 20.3 89 634-723 270-365 (490)
90 1fxk_C Protein (prefoldin); ar 41.4 1.2E+02 0.004 27.4 9.1 43 376-418 90-132 (133)
91 2ve7_A Kinetochore protein HEC 39.8 74 0.0025 33.5 8.4 88 48-144 21-112 (315)
92 3hnw_A Uncharacterized protein 39.6 1.7E+02 0.0057 27.1 9.8 29 340-368 106-134 (138)
93 1wt6_A Myotonin-protein kinase 39.3 1E+02 0.0034 26.1 7.3 27 338-364 46-72 (81)
94 4dnd_A Syntaxin-10, SYN10; str 38.9 1.4E+02 0.0046 27.5 9.0 25 289-313 32-56 (130)
95 1sig_A Sigma70, RNA polymerase 38.6 59 0.002 34.2 7.6 77 338-418 156-242 (339)
96 2avr_X Adhesion A; antiparalle 38.4 2.3E+02 0.0078 25.7 10.3 42 345-386 35-76 (119)
97 3tnu_B Keratin, type II cytosk 37.7 69 0.0024 29.2 6.9 67 338-404 37-105 (129)
98 1nfn_A Apolipoprotein E3; lipi 37.2 61 0.0021 31.7 6.8 15 300-314 108-122 (191)
99 1gs9_A Apolipoprotein E, APOE4 37.1 51 0.0017 31.6 6.0 12 342-353 133-144 (165)
100 3htk_A Structural maintenance 36.8 1.3E+02 0.0044 23.3 7.4 32 382-413 27-58 (60)
101 3qne_A Seryl-tRNA synthetase, 36.4 77 0.0026 35.6 8.2 38 335-372 76-113 (485)
102 3tnu_A Keratin, type I cytoske 36.3 56 0.0019 29.9 6.0 67 338-404 39-107 (131)
103 1m1j_C Fibrinogen gamma chain; 35.8 1.5E+02 0.0053 32.4 10.3 45 386-430 25-69 (409)
104 3abh_A Pacsin2, protein kinase 35.5 2.7E+02 0.0092 28.5 12.0 24 345-368 200-223 (312)
105 2efr_A General control protein 35.1 3E+02 0.01 26.1 17.9 31 338-368 78-108 (155)
106 2igp_A Retinoblastoma-associat 35.0 43 0.0015 30.4 4.9 43 104-146 18-60 (120)
107 3mq9_A Bone marrow stromal ant 35.0 2.6E+02 0.0088 30.5 12.3 74 283-363 396-469 (471)
108 3g67_A Methyl-accepting chemot 34.9 3.4E+02 0.012 26.8 21.1 43 395-437 77-129 (213)
109 2pih_A Protein YMCA; regulate 34.6 2.8E+02 0.0095 25.8 10.7 20 385-404 86-105 (151)
110 2p22_C Protein SRN2; endosome, 33.7 3.4E+02 0.012 26.4 11.5 34 285-325 87-120 (192)
111 3a7p_A Autophagy protein 16; c 33.7 1.3E+02 0.0043 28.5 7.9 57 308-364 74-130 (152)
112 1xaw_A Occludin; coiled-coil, 33.7 2.6E+02 0.009 26.0 10.0 36 288-323 63-104 (140)
113 3mtu_E Head morphogenesis prot 33.6 26 0.00088 29.4 2.8 32 441-472 30-62 (77)
114 2p22_A Suppressor protein STP2 33.1 3.4E+02 0.012 26.1 13.2 46 283-328 11-57 (174)
115 1ses_A Seryl-tRNA synthetase; 33.1 1.4E+02 0.0047 32.8 9.5 19 452-470 83-101 (421)
116 2ve7_C Kinetochore protein NUF 32.8 89 0.003 31.9 7.4 94 47-144 18-131 (250)
117 4etp_A Kinesin-like protein KA 32.0 56 0.0019 35.7 6.1 21 449-469 163-183 (403)
118 3vp9_A General transcriptional 31.8 1.3E+02 0.0044 26.1 7.0 81 282-372 5-89 (92)
119 3lay_A Zinc resistance-associa 31.8 2.7E+02 0.0091 26.8 10.2 38 282-326 69-106 (175)
120 3q8t_A Beclin-1; autophagy, AT 31.5 2.5E+02 0.0087 24.2 13.4 70 335-420 23-92 (96)
121 3trt_A Vimentin; cytoskeleton, 31.1 2.1E+02 0.0073 23.2 9.2 42 378-419 32-73 (77)
122 2dq3_A Seryl-tRNA synthetase; 31.0 95 0.0033 34.1 7.8 33 336-368 29-61 (425)
123 1wle_A Seryl-tRNA synthetase; 30.6 2.3E+02 0.008 31.8 11.0 31 338-368 117-147 (501)
124 1f5n_A Interferon-induced guan 30.0 4.4E+02 0.015 30.1 13.4 15 403-417 568-582 (592)
125 3s4r_A Vimentin; alpha-helix, 29.4 1.7E+02 0.0057 25.3 7.5 40 377-416 52-91 (93)
126 2lw1_A ABC transporter ATP-bin 29.4 33 0.0011 29.3 2.9 27 283-309 55-81 (89)
127 2inr_A DNA topoisomerase 4 sub 28.9 4.1E+02 0.014 30.0 12.4 107 300-420 366-479 (514)
128 1lq7_A Alpha3W; three helix bu 28.9 2E+02 0.0069 22.2 7.3 13 314-326 7-19 (67)
129 2efk_A CDC42-interacting prote 28.9 4.6E+02 0.016 26.3 20.9 12 477-488 260-271 (301)
130 3aco_A Pacsin2, protein kinase 28.7 5.2E+02 0.018 26.9 17.4 49 338-391 193-241 (350)
131 2fxo_A Myosin heavy chain, car 28.3 3.3E+02 0.011 24.5 14.9 6 286-291 22-27 (129)
132 4dve_A Biotin transporter BIOY 27.8 2.5E+02 0.0084 27.6 9.3 87 588-680 12-107 (198)
133 2nrj_A HBL B protein; enteroto 27.7 5.7E+02 0.019 27.0 16.0 17 471-487 304-320 (346)
134 3ghg_B Fibrinogen beta chain; 27.2 1.8E+02 0.006 32.4 8.9 12 404-415 165-176 (461)
135 3pe0_A Plectin; cytoskeleton, 26.5 5.3E+02 0.018 26.3 12.9 77 297-373 86-186 (283)
136 1fxk_A Prefoldin; archaeal pro 26.3 3E+02 0.01 23.4 9.1 60 250-309 16-90 (107)
137 3mov_A Lamin-B1; LMNB1, B-type 25.9 2.5E+02 0.0087 24.2 8.0 16 288-303 16-31 (95)
138 4etp_A Kinesin-like protein KA 25.8 32 0.0011 37.6 2.8 32 337-368 24-55 (403)
139 1x79_B RAB GTPase binding effe 25.7 3.6E+02 0.012 24.1 11.7 20 284-303 6-25 (112)
140 3u06_A Protein claret segregat 25.6 57 0.002 35.8 4.8 21 448-468 162-182 (412)
141 2dq3_A Seryl-tRNA synthetase; 25.6 1E+02 0.0036 33.8 6.9 37 336-372 74-110 (425)
142 3cvf_A Homer-3, homer protein 25.5 3E+02 0.01 23.1 9.2 69 289-368 4-72 (79)
143 3swf_A CGMP-gated cation chann 25.1 2.4E+02 0.0083 23.4 7.2 44 281-324 4-47 (74)
144 3swy_A Cyclic nucleotide-gated 25.0 2.2E+02 0.0076 21.5 6.4 42 282-323 3-44 (46)
145 3lss_A Seryl-tRNA synthetase; 24.6 2.4E+02 0.0081 31.6 9.5 37 336-372 109-146 (484)
146 3ghg_B Fibrinogen beta chain; 24.5 5.9E+02 0.02 28.2 12.4 40 378-417 151-192 (461)
147 2jee_A YIIU; FTSZ, septum, coi 24.5 3.2E+02 0.011 23.1 9.9 13 377-389 65-77 (81)
148 2zqm_A Prefoldin beta subunit 24.4 3.4E+02 0.012 23.4 10.5 70 245-314 16-100 (117)
149 2xzr_A Immunoglobulin-binding 24.3 3.5E+02 0.012 23.5 12.1 40 283-322 33-72 (114)
150 3vjf_A WA20; protein design, d 24.3 3.1E+02 0.01 22.8 11.0 72 288-360 4-82 (102)
151 3ryc_E Stathmin-4; alpha-tubul 24.2 4.4E+02 0.015 24.6 12.7 28 334-361 101-129 (143)
152 3plt_A Sphingolipid long chain 24.2 5.6E+02 0.019 25.8 11.8 32 285-316 67-98 (234)
153 1l8d_A DNA double-strand break 24.1 3.5E+02 0.012 23.3 12.7 31 338-368 72-102 (112)
154 4dx5_A Acriflavine resistance 24.0 3.9E+02 0.013 32.6 12.3 15 132-146 151-166 (1057)
155 3r2p_A Apolipoprotein A-I; amp 23.7 3.2E+02 0.011 26.0 9.4 30 340-369 147-181 (185)
156 2a01_A Apolipoprotein A-I; fou 22.8 1.5E+02 0.0051 29.8 7.0 132 287-423 62-208 (243)
157 2xhe_B Syntaxin1; exocytosis, 22.2 5.4E+02 0.019 26.0 11.3 26 338-363 139-164 (279)
158 2l5g_B Putative uncharacterize 21.8 90 0.0031 23.1 3.5 32 444-475 6-37 (42)
159 2kke_A Uncharacterized protein 21.7 85 0.0029 23.3 3.4 17 368-384 30-46 (53)
160 4gkw_A Spindle assembly abnorm 21.7 4.7E+02 0.016 24.0 13.3 104 260-368 26-129 (167)
161 1sjj_A Actinin; 3-helix bundle 21.6 1E+03 0.035 27.8 26.0 32 295-326 447-478 (863)
162 3ne5_A Cation efflux system pr 21.5 6.5E+02 0.022 30.6 13.6 20 131-150 159-179 (1054)
163 2b5u_A Colicin E3; high resolu 21.4 8.9E+02 0.03 27.1 18.4 29 442-470 425-453 (551)
164 3edv_A Spectrin beta chain, br 20.8 6.5E+02 0.022 25.3 15.2 153 249-407 145-320 (323)
165 3abh_A Pacsin2, protein kinase 20.6 6.7E+02 0.023 25.4 11.9 24 345-368 151-174 (312)
166 3fpp_A Macrolide-specific effl 20.5 2.9E+02 0.0099 28.4 8.9 28 345-372 122-149 (341)
167 1qu7_A Methyl-accepting chemot 20.3 6.3E+02 0.021 24.9 12.7 63 385-447 56-129 (227)
168 1ic2_A Tropomyosin alpha chain 20.3 3.7E+02 0.013 22.2 8.5 18 289-306 11-28 (81)
169 1s35_A Beta-I spectrin, spectr 20.1 5.5E+02 0.019 24.1 17.5 59 256-317 47-106 (214)
170 2b9c_A Striated-muscle alpha t 20.1 5.3E+02 0.018 24.0 11.8 35 283-317 37-71 (147)
171 2l7b_A Apolipoprotein E, APO-E 20.0 7.5E+02 0.026 25.7 13.8 20 298-317 114-133 (307)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.24 E-value=0.00042 Score=65.50 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHHH-HhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeec
Q 041515 600 GVVMSFATGLANTSLKHNSVGFYQMS-KIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVT 666 (762)
Q Consensus 600 gl~~~l~i~l~N~SL~yvsVs~~qml-Ksas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~ 666 (762)
.++++++..+.+.++++++++....+ . ...|++ +++++++|||++++.++++++++++||++....
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~-~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWS-GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHH-HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34577888999999999999976666 6 468875 788999999999999999999999999987653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.23 E-value=0.00083 Score=60.96 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHHH-HhhhHHHH-HHHHHHHhcccccHHHHHHHHHHHHhhheeeecC
Q 041515 599 LGVVMSFATGLANTSLKHNSVGFYQMS-KIAVTPTI-VLAEFILFSKTISYKKVLALAIVSVGVAVATVTD 667 (762)
Q Consensus 599 lgl~~~l~i~l~N~SL~yvsVs~~qml-Ksas~P~~-vll~~l~lgek~s~~~~lsLlli~~GV~la~~~d 667 (762)
..++++++..+.+.++++.|+|..-.+ .+ ..|+. +++++++|||++++.++++++++++|+++....+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g-~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSG-VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhh-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344577888899999999999998777 64 67865 7889999999999999999999999999876543
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.80 E-value=0.0012 Score=82.72 Aligned_cols=10 Identities=30% Similarity=0.776 Sum_probs=4.5
Q ss_pred CCCCCCcccc
Q 041515 117 GYIGDISYYK 126 (762)
Q Consensus 117 Gy~~digy~t 126 (762)
||-|++-|.+
T Consensus 584 Hyag~V~Y~~ 593 (1184)
T 1i84_S 584 HYAGKVTYNA 593 (1184)
T ss_dssp CSSCEEEEEC
T ss_pred CCCceEEecc
Confidence 3444444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.90 E-value=0.0057 Score=76.57 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515 286 LEQLDEQVGAKKHNLVELELQWDALKESL 314 (762)
Q Consensus 286 ~~kL~~~~~~~~~~l~~L~~qWe~~r~pl 314 (762)
+++++..+.....++..|..+.++.+..+
T Consensus 873 L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 873 QQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444333
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.83 E-value=1.7 Score=43.24 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhHHHHH
Q 041515 287 EQLDEQVGAKKHNLVEL 303 (762)
Q Consensus 287 ~kL~~~~~~~~~~l~~L 303 (762)
.+++..+.....++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~ 95 (284)
T 1c1g_A 79 TDAEADVASLNRRIQLF 95 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.48 E-value=0.29 Score=56.11 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYA 423 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~ 423 (762)
+.+.++-+.+++|++.+..+-+|+-.+..|+..+.++++|.|.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3455666777778888888888888888888888888888875
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.02 E-value=0.44 Score=58.97 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETR 405 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr 405 (762)
.+.-|-+++++|+++.....+.|..
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777777777766666666655
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.56 E-value=0.2 Score=56.01 Aligned_cols=103 Identities=12% Similarity=0.169 Sum_probs=60.7
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHH-hhHHHHHHHHHHHHH
Q 041515 385 EITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQSFEQVSEKILA-TDRVRREIAEYEKKL 463 (762)
Q Consensus 385 Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~~~~l~~~i~~-tg~~~rei~~le~qi 463 (762)
+|-+.|-||+.|+.++++|.|..=.+++......+..|..+.|.+-++.+....-.. .+-+ +..++|.|..|+.+|
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN---tynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN---TYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH---HHHHTTHHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch---hHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999988888777777777777777776555443221111 1111 113344444444444
Q ss_pred HHHhccccchhhhhhhHHHHHHHhhhhhhh
Q 041515 464 AAVASRSLNVDKLQADVDVIMKENEFLEQQ 493 (762)
Q Consensus 464 ~~~~~k~~nle~i~~D~~~i~~en~~~~s~ 493 (762)
+..- .|+.-|++.++.++.+..+||.|
T Consensus 127 dnQl---snIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 127 IEKV---QHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 33444444444444555555554
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.46 E-value=1.5 Score=45.17 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041515 402 KETRELQLESNSIQERLHRTYAVVDDMIFREA 433 (762)
Q Consensus 402 ~dtr~lqkein~~~~~l~Rtf~v~delif~~a 433 (762)
.+...+.++.+.+.+.++-.---.++.+.+..
T Consensus 157 ~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~ 188 (256)
T 3na7_A 157 ETQQIIFKKKEDLVEKTEPKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Confidence 34445556666666666666666666666544
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.40 E-value=0.36 Score=55.37 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=11.5
Q ss_pred HhhhhhhHHhHHHHHHHHHHHHHHHH
Q 041515 387 TKNSRKVDTDIERILKETRELQLESN 412 (762)
Q Consensus 387 v~nirKQ~~eI~Kil~dtr~lqkein 412 (762)
-+.+...++|+++.-.|.++++.+++
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444444444444443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.65 E-value=1.9 Score=58.83 Aligned_cols=50 Identities=18% Similarity=0.466 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDM 428 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~del 428 (762)
--..+-++-+.|.+-+++.++...|...|+.|++..+.||+|.-..++.+
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667788888888999999999999999999999999999998887655
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.65 E-value=2.6 Score=52.17 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=16.4
Q ss_pred hcCCCCCCcccccc------cC----ChHHHHHHHHHHHHHh
Q 041515 115 NLGYIGDISYYKFL------YP----SEEDLYKLIRFLVERL 146 (762)
Q Consensus 115 ~~Gy~~digy~tfL------Y~----~~~dlr~l~~fLiekL 146 (762)
..||+--+.|+-|+ -| .. |-+...--|++.+
T Consensus 695 r~Gyp~R~~~~eF~~RY~~L~~~~~~~~-d~k~~~~~il~~~ 735 (1080)
T 2dfs_A 695 AAGFPSRWTYQEFFSRYRVLMKQKDVLS-DRKQTCKNVLEKL 735 (1080)
T ss_dssp TTSCCEEEEHHHHHHHHTTTSCGGGCCS-SHHHHHHHHHTTT
T ss_pred hcCCCchhhHHHHHHHHHHHCCccCCCC-ChHHHHHHHHHHh
Confidence 44666666665542 12 12 5566666666666
No 13
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=92.40 E-value=1.8 Score=46.75 Aligned_cols=69 Identities=10% Similarity=0.243 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~ 417 (762)
-++.+-+.+++....+..++..|.++..+|+ +||..|-.+|+-|=..|.-...+++.+..+|.++...
T Consensus 89 y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe------------~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 89 LTKNIVELMRGDFAKANNNDNTFKQINEDLR------------SRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHH------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777888888888888888887 4555555566655555555555555555555555554
Q ss_pred H
Q 041515 418 L 418 (762)
Q Consensus 418 l 418 (762)
+
T Consensus 157 I 157 (390)
T 1deq_A 157 I 157 (390)
T ss_pred H
Confidence 4
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.22 E-value=11 Score=38.48 Aligned_cols=104 Identities=8% Similarity=0.058 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHH
Q 041515 316 EKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDT 395 (762)
Q Consensus 316 ~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~ 395 (762)
.++..+++++..........-.++++++.+++....++....+.+++.+..+......--.+++.+.|-..-..+..-++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333345566666666667777666666666666666544323334455555555555555556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 396 DIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 396 eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
+|..+......+++++....+.+.
T Consensus 112 eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 112 EIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555555555443
No 15
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.67 E-value=0.51 Score=52.85 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=31.3
Q ss_pred HHHHHHHHHh-hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041515 379 YIERIKEITK-NSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFRE 432 (762)
Q Consensus 379 Yt~RI~Eiv~-nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~ 432 (762)
|.+++.+=.. ...+.+.|++++-.|.+..|.+++.+.+.=+|.--+++|+--+=
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 4444444333 33334445566677777777777777777677666666654433
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.21 E-value=6 Score=54.08 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChH
Q 041515 312 ESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRR 377 (762)
Q Consensus 312 ~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~ 377 (762)
.|+.++.+++++++...+.+..++.++|++++++++++.++.+....+.++|+.+.+...+...|.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777766555555555556677777777777776666666666777666554444443
No 17
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=86.70 E-value=3.5 Score=36.52 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRE 406 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~ 406 (762)
+..|++++.++...+..+-.-.+..+.-.+.++.=|.++|.+.|.+|--+ |+.++--=+|+.+.+.|...
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~-Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAA-VSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55778888888888888887888888888899999999999999999754 56666666777777777655
No 18
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.82 E-value=1.7 Score=48.55 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=0.0
Q ss_pred HHHHHHhh
Q 041515 621 FYQMSKIA 628 (762)
Q Consensus 621 ~~qmlKsa 628 (762)
+.++=++|
T Consensus 435 ttttr~sC 442 (562)
T 3ghg_A 435 TTTTRRSC 442 (562)
T ss_dssp --------
T ss_pred cceeeccc
Confidence 33444443
No 19
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.56 E-value=8 Score=41.73 Aligned_cols=95 Identities=9% Similarity=0.142 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSK 362 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~ 362 (762)
..|+..+..++....+...+...---++-.+|...+.-|++.+.++.. .|+.|+.-++....++++-|..+
T Consensus 87 ~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-------~ir~Lq~~l~~q~~kiqRLE~~I-- 157 (390)
T 1deq_A 87 NTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-------RINLLQKNVRDQLVDMKRLEVDI-- 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 334444444333333344444444444555555555556655554432 33334444444444443333333
Q ss_pred HHHHHhcCCCccChHHHHHHHHHHHhh
Q 041515 363 LSADLEKQPKVASRRSYIERIKEITKN 389 (762)
Q Consensus 363 L~~~~~~~~k~~~R~~Yt~RI~Eiv~n 389 (762)
++.+-|=..+=+.|+.|..+.-.+
T Consensus 158 ---d~c~~~C~~sC~~~l~~~vD~e~y 181 (390)
T 1deq_A 158 ---DIKIRSCKGSCSRALEHKVDLEDY 181 (390)
T ss_pred ---HHHhcccccccchhhhhhccHHHH
Confidence 666666667777788888765444
No 20
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=84.20 E-value=46 Score=35.27 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhcCccc
Q 041515 380 IERIKEITKNSRKVDTDIERILKETRELQLESNSIQ----------ERLHRTYAVVDDMIFREAKKDQ 437 (762)
Q Consensus 380 t~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~----------~~l~Rtf~v~delif~~akkd~ 437 (762)
++.+.+-+..+.++=++|.+|+.-+..+=.+.|-|. |..-|-|+|+=+=|-+-|.+..
T Consensus 131 ~~~~~~~~~~l~~~~~~I~~i~~~I~~IA~QTNLLALNAaIEAARAGE~GrGFAVVAdEVRkLAe~t~ 198 (341)
T 3zx6_A 131 VDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSA 198 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence 344555666677777889999999999988988853 5566999999999998887644
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.82 E-value=38 Score=33.26 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhccc-cchhhhhhhHHHHHHHhh
Q 041515 455 EIAEYEKKLAAVASRS-LNVDKLQADVDVIMKENE 488 (762)
Q Consensus 455 ei~~le~qi~~~~~k~-~nle~i~~D~~~i~~en~ 488 (762)
...-||..++. +..- .-++++..+++.+++|.+
T Consensus 145 r~alLE~El~E-Ke~l~~~~QRLkdE~rDLk~El~ 178 (189)
T 2v71_A 145 RNAFLESELDE-KESLLVSVQRLKDEARDLRQELA 178 (189)
T ss_dssp HHHHHHHHHHH-HHHHHCCC---------------
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555553 1111 445555555555555554
No 22
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=82.61 E-value=4.1 Score=36.07 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHH
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERI 400 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Ki 400 (762)
.++++...+..-++++.|+.-|..++|- ..|+.|..|+.+--..+.+=+.|+.++
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~p~-~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREIPP-QSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788889999999999999985 559999999988877776666665553
No 23
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=81.83 E-value=50 Score=33.89 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=49.5
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhcCccch--------HHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKETRELQLESNSIQ----------ERLHRTYAVVDDMIFREAKKDQS--------FEQV 442 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~----------~~l~Rtf~v~delif~~akkd~~--------~~~l 442 (762)
+.+.+.+..+.+.-++|.++...++.+-.+.|-+. |.--|-|+|+=+-|-+-|..-.. ..++
T Consensus 110 ~~~~~~~~~l~~~~~~i~~i~~~I~~Ia~qtnllALNAaIEAArAGe~GrGFaVVA~eIr~LA~~t~~~~~~i~~v~~~i 189 (309)
T 2ch7_A 110 KDVERVVESFQKGAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEI 189 (309)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777777777777777664 44568888877777776665331 2233
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 041515 443 SEKILATDRVRREIAEYEKK 462 (762)
Q Consensus 443 ~~~i~~tg~~~rei~~le~q 462 (762)
-+..+.++....+++++=++
T Consensus 190 ~~~a~~~~~~~~~i~~~~~~ 209 (309)
T 2ch7_A 190 RSIAEDAGKVSSEITARVEE 209 (309)
T ss_dssp HHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544333
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.20 E-value=11 Score=34.32 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 346 RQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 346 ~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
+.++....+..++-|.||+..|..+
T Consensus 94 ~~e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 94 LSEIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556678888887777643
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.89 E-value=10 Score=33.39 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=39.2
Q ss_pred HHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 294 GAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 294 ~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
++.+.+|..|..+=+ ...++...++..+...+.+....-.+|..+..+++.+..++...++.+......++..
T Consensus 5 d~iKkKm~~lk~e~e----~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 5 EAIKKKMQMLKLDKE----NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556665544332 2333444444444433344444445667777777777777766666666655555543
No 26
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=80.54 E-value=11 Score=33.33 Aligned_cols=51 Identities=10% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHh
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTD 396 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~e 396 (762)
.++++...+..-++++.|+.-|..++|- ..|+.|..|+.+--..+.+=|.|
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~p~-s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYAPL-TFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777888889999999999999984 55999999998877666554444
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.47 E-value=27 Score=32.54 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHhhHHHHH--HHHHHHhhHHHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVEL--ELQWDALKESLE 315 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L--~~qWe~~r~pl~ 315 (762)
.++++.++-..++.....+..- .......|...+
T Consensus 26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVL 61 (138)
T 3hnw_A 26 SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDM 61 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 4788888888888777666644 454555555443
No 28
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.07 E-value=22 Score=32.11 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 289 LDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 289 L~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
|+..+..+.+-+.+-..||-..-...+.=..+|+++... ...++++++.+++.+.+++++..+..++|+.+.+
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq-------~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-------GQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 444445555555555555555554444444444443221 1346788888999999999999999999988887
Q ss_pred cC
Q 041515 369 KQ 370 (762)
Q Consensus 369 ~~ 370 (762)
-+
T Consensus 103 ~~ 104 (121)
T 3mq7_A 103 VL 104 (121)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.25 E-value=12 Score=32.90 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=37.8
Q ss_pred HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 041515 293 VGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEK 369 (762)
Q Consensus 293 ~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~ 369 (762)
+++.+.+|..|..+=+.. .+++..++..+...+.+....-.+|..+..+++.+..++..-++.+......++.
T Consensus 4 MdaIKkKm~~lk~e~e~a----~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENA----LDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665543333 3333334433333333334344566666667777777766655555555444443
No 30
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=79.13 E-value=7.2 Score=32.86 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRE 406 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~ 406 (762)
+..|++++.++...+..+-.--+..+.-...++.=|.++|.+.|.+|--+ |+.++--=.|+.+.+.|-..
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~-V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAA-VSALETKLGELKRELADLIA 73 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888877777788888899999999999999999754 56666666677777776655
No 31
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=77.62 E-value=16 Score=40.32 Aligned_cols=68 Identities=10% Similarity=0.023 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 298 HNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 298 ~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
++|..+--+||+.=.+-+++++..-..+......+.. -++.+-+.+++....+..++..+.++..+++
T Consensus 50 CrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~---y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 50 CRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNR---VIVETINILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHH---HHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 4667776777766666666666666555544444333 3355566777777888888888888888888
No 32
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.60 E-value=7.1 Score=32.44 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=34.1
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Q 041515 318 KRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQ 370 (762)
Q Consensus 318 ~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~ 370 (762)
+++|++.+.. |.++|+.-+..+++.+.+++.|++++.+|+.++.+.
T Consensus 21 i~eLq~~L~~-------K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQE-------KIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566655443 344566666678888899999999999999998765
No 33
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=76.20 E-value=1.3e+02 Score=35.34 Aligned_cols=130 Identities=10% Similarity=0.105 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------h-cCCCcc--------ChHHHHHHHHHHHhhhhhhHHh
Q 041515 333 QAKLLKLREVELERQSVLSEIRKREDEYSKLSADL-------E-KQPKVA--------SRRSYIERIKEITKNSRKVDTD 396 (762)
Q Consensus 333 ~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~-------~-~~~k~~--------~R~~Yt~RI~Eiv~nirKQ~~e 396 (762)
..++.++++.-++....+..++.+-+.++..-+.+ . .+|... ..-...+++++=+..|++|++.
T Consensus 495 ~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~~~~~~l~~~~p~~~~~~~~~~~~~~~~L~~~l~~l~~l~~~R~~ 574 (704)
T 2xs1_A 495 RAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREG 574 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHTSCHHHHHHTSCCCCCCGGGSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHhhCccCCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666667777777777655554433222 2 334421 0123557777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhc---CccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 041515 397 IERILKETRELQLESNSIQERLHRTYA----VVDDMIFREA---KKDQSFEQVSEKILATDRVRREIAEYEKKLAAVAS 468 (762)
Q Consensus 397 I~Kil~dtr~lqkein~~~~~l~Rtf~----v~delif~~a---kkd~~~~~l~~~i~~tg~~~rei~~le~qi~~~~~ 468 (762)
+.+-+.+ .. ..++.+|-...+ +-++.+|.+- |.|+...+|-+.+.....+.++|++...+.....+
T Consensus 575 ~~~~lk~---~~---ddI~~~ll~~~~~~~~~~~e~lf~~eL~k~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~ 647 (704)
T 2xs1_A 575 LENDLKS---VN---FDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQ 647 (704)
T ss_dssp HHHHHHH---CC---CCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHh---hc---cCccHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6555543 22 223333333221 1146667543 36888899999999999999999998888876654
No 34
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=75.05 E-value=13 Score=32.41 Aligned_cols=58 Identities=10% Similarity=0.263 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcC--CCccChHHHHHHHHHHHhhhhh-hHHhHHHHHHH
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQ--PKVASRRSYIERIKEITKNSRK-VDTDIERILKE 403 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~--~k~~~R~~Yt~RI~Eiv~nirK-Q~~eI~Kil~d 403 (762)
.++++...+..-++++.|+.-|..++ |- ..|+.|..|+.+--+.+.+ =|.+..++..|
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~-~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d~ 95 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDA-SERATYKAKLREWKKTIQSDIKRPLQSLVDS 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56667777778889999999999999 75 4599999999999999988 88888887665
No 35
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=74.77 E-value=38 Score=37.39 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=13.3
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHH
Q 041515 381 ERIKEITKNSRKVDTDIERILKET 404 (762)
Q Consensus 381 ~RI~Eiv~nirKQ~~eI~Kil~dt 404 (762)
++|.=+-+||+.|..+|.|.-.|+
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666665555554444
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=74.49 E-value=63 Score=31.08 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q 041515 340 REVELERQSVLSEIRKREDEYSKL 363 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k~e~~~~L 363 (762)
.++..++..+..|+..-.+-+.+.
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333
No 37
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.10 E-value=38 Score=37.31 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 041515 268 LKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESL 325 (762)
Q Consensus 268 ~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~ 325 (762)
....+..+.....++++.+++++..+++.-++...-. |++.++..|.+++.+.++..
T Consensus 357 ~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~ 413 (471)
T 3mq9_A 357 VRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhH
Confidence 3334444433344678888888887777665554333 56777777777766666543
No 38
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=72.75 E-value=12 Score=32.79 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHH
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQL 409 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqk 409 (762)
+..|++++.++...+..+-.--+..+.-...++.=|.++|.+.|.+|--+ |+.++--=.|+.+.+.|...-++
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~-V~~lq~Ki~elkr~lAd~v~~~k 76 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAA-VSALETKLGELKRELADLIAAQK 76 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc
Confidence 34567777777777777777777777788899999999999999999754 56676666777777777766444
No 39
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=72.11 E-value=9.9 Score=34.68 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=64.7
Q ss_pred HHHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCCCCCCCCChhHHHHHHhhHHHHHHHHhcCCCCCCcccc
Q 041515 47 ILLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYIGDISYYK 126 (762)
Q Consensus 47 ii~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~~l~~~lP~~msaRfr~~~~lA~a~k~~Gy~~digy~t 126 (762)
-|.+=|..-|++-+=...+|+.-|+..++...-=.++.|||++.++. -+.--.+....|++||+..|.=-+
T Consensus 22 ~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~~~~~~---------~~~eeev~~~lK~L~YP~~isKS~ 92 (120)
T 2igp_A 22 QLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPD---------TKFEEEVPRIFKDLGYPFALSKSS 92 (120)
T ss_dssp HHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTTCCCCC---------TTHHHHHHHHHHHTTCCSCCCHHH
T ss_pred HHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCCCccCC---------CChHHHHHHHHHHcCCCceeCHHH
Confidence 45566777787644344678888888888888888888999987751 134567889999999999875544
Q ss_pred cccCC----hHHHHHHHHHHHHHh
Q 041515 127 FLYPS----EEDLYKLIRFLVERL 146 (762)
Q Consensus 127 fLY~~----~~dlr~l~~fLiekL 146 (762)
+--++ -.-+=.++-||+|-+
T Consensus 93 L~a~g~pHsWp~~L~~L~WLvel~ 116 (120)
T 2igp_A 93 MYTVGAPHTWPHIVAALVWLIDCI 116 (120)
T ss_dssp HHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred hcCCCCCccHHHHHHHHHHHHHHH
Confidence 43332 345777778888743
No 40
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=71.80 E-value=14 Score=33.13 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLES 411 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkei 411 (762)
.|++++.++...+..+-.--+..+.-...++.=|.++|.+.|.+|--+ |+.++--=.|+.+.+.|...-+|..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~-Vs~lq~KiaeLKrqLAd~va~~k~~ 95 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGV-AVSIQAKIDELKRQLADRIATGKNL 95 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456667777777777777777777778899999999999999999754 5667766777778887777655543
No 41
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.46 E-value=53 Score=28.88 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHhcCCCc
Q 041515 331 EAQAKLLKLREVELERQSVLSEIRKREDEYSK---LSADLEKQPKV 373 (762)
Q Consensus 331 e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~---L~~~~~~~~k~ 373 (762)
+.+.++.+...++++++.+...++..+..... ...+++.+|.+
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d 52 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDD 52 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34445556666666666666666655544444 44577777764
No 42
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=69.22 E-value=1.3e+02 Score=33.35 Aligned_cols=55 Identities=13% Similarity=0.372 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDI 397 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI 397 (762)
+++.++.+.+....++..-++.|.....++... |..|..-.-.+...+...+++-
T Consensus 186 ~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~-----~~~y~~~~~~~~~~lQ~lEeeR 240 (486)
T 3haj_A 186 QLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQG-----TPQYMENMEQVFEQCQQFEEKR 240 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777788888887777743 5678888888877777776654
No 43
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=68.74 E-value=78 Score=35.30 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 342 VELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 342 ~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
|...++..+..+...++..++...++|
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e 152 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEME 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHH
Confidence 333444444444444444444444444
No 44
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=67.49 E-value=89 Score=33.83 Aligned_cols=40 Identities=33% Similarity=0.502 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l 418 (762)
--.|+.+|..+-.|.++++..-..|.|++.+++|++.--+
T Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 210 LKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 4579999999999999999999999999999999987644
No 45
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=65.80 E-value=2e+02 Score=33.65 Aligned_cols=32 Identities=0% Similarity=-0.017 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESL 314 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl 314 (762)
-..+.++++.++++.+-=..+...|+.|+.-+
T Consensus 495 ~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l 526 (704)
T 2xs1_A 495 RAEGTNFRTVLDKAVQADGQVKECYQSHRDTI 526 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566777888888888888888898886655
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.69 E-value=58 Score=35.93 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVEL 303 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L 303 (762)
+.|+-.|-+.+.+...++..+
T Consensus 338 HrNLV~L~gyC~s~~~~~~~~ 358 (487)
T 3oja_A 338 QREIDALKEQYRTVIDQVTLR 358 (487)
T ss_dssp HHHHHHHHHHTCCCCCHHHHH
T ss_pred ccchhhHHHHhcChHHHHHHH
Confidence 566777777666665555554
No 47
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=65.44 E-value=60 Score=35.67 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhc
Q 041515 456 IAEYEKKLAAVAS 468 (762)
Q Consensus 456 i~~le~qi~~~~~ 468 (762)
|..|+.+|.....
T Consensus 121 i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 121 ITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 48
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=64.40 E-value=33 Score=31.26 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHH
Q 041515 346 RQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIE 381 (762)
Q Consensus 346 ~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~ 381 (762)
.+.....+....+++.++...++.+.+..+.+.|-.
T Consensus 36 AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~ 71 (119)
T 3etw_A 36 ADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKS 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 333344444445555555555555544444444433
No 49
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.31 E-value=37 Score=37.86 Aligned_cols=40 Identities=8% Similarity=0.166 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLE 322 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~ 322 (762)
..++..|+........++.++...-.+++..+++....++
T Consensus 120 ~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 120 YQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444444444444444443
No 50
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=61.38 E-value=1.6e+02 Score=32.26 Aligned_cols=78 Identities=13% Similarity=0.030 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCc--cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKV--ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQ 415 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~--~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~ 415 (762)
.|++|+..+.++..--..-++..+.++..+....+. .+-..||+....++.-+++=+.-|.+.-..++.||..+++..
T Consensus 39 ~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 118 (411)
T 3ghg_C 39 DLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNN 118 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456666677666666666777777777777766554 444667777766555555556666665566666666544443
No 51
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=61.07 E-value=82 Score=28.63 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhc
Q 041515 333 QAKLLKLREVELERQSVLSEIRKR------EDEYSKLSADLEK 369 (762)
Q Consensus 333 ~~k~~~ik~~~~~~~~~~~e~~~k------~e~~~~L~~~~~~ 369 (762)
++.+.+.++++.++.+-.++|+.- +..|.+|.++|++
T Consensus 40 ~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~ 82 (119)
T 3etw_A 40 RQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYED 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 344444455555444444444322 6677777776663
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=59.96 E-value=69 Score=26.78 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=43.5
Q ss_pred HhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 296 KKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 296 ~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
.+.||..|..+-+.....+..-...+++. +......-.+|..+..+++.+.+++..-++........++...+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~----e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAA----EERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666555555544444433333332 22222233567778888888888888888888887777765443
No 53
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=59.55 E-value=65 Score=32.18 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHH
Q 041515 330 LEAQAKLLKLR-EVELERQSVLSE 352 (762)
Q Consensus 330 ~e~~~k~~~ik-~~~~~~~~~~~e 352 (762)
.|.+.|+.+++ ++-++.++...+
T Consensus 185 NeKK~KIR~lq~~Ll~~~~~~~~~ 208 (213)
T 1ik9_A 185 NEKKTKIRSLHNKLLNAAQEREKD 208 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhh
Confidence 44444444333 333333333333
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=58.77 E-value=90 Score=27.29 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=27.4
Q ss_pred cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 374 ASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 374 ~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
.....+...|-++-..++.-+++|..+-.....+..++..+...+.
T Consensus 57 l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 57 LTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555566666666666666666666666655
No 55
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=58.01 E-value=89 Score=26.94 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHhcCCCcc--ChHH---HH-HHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515 336 LLKLREVELERQSVLSEIRKREDEY---SKLSADLEKQPKVA--SRRS---YI-ERIKEITKNSRKVDTDIERILKETRE 406 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~---~~L~~~~~~~~k~~--~R~~---Yt-~RI~Eiv~nirKQ~~eI~Kil~dtr~ 406 (762)
+.+...++++++.+...++..+... .....+++.+|.|. .|.. ++ +-.-|+..++.+..+.|. .+++.
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~---~~i~~ 83 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQ---LREKT 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHH---HHHHH
Confidence 3344444444444444444443333 33445777777642 2211 11 223455555555555544 33333
Q ss_pred HHHHHHHHHHHH
Q 041515 407 LQLESNSIQERL 418 (762)
Q Consensus 407 lqkein~~~~~l 418 (762)
|+++++.+..++
T Consensus 84 le~~~~~~~~~l 95 (107)
T 1fxk_A 84 IERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 56
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.15 E-value=67 Score=28.10 Aligned_cols=58 Identities=22% Similarity=0.199 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 311 KESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 311 r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
+..|+.+|..|+..+..-+.|..+--..-+..-.+++++..|++.-......|..+.+
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888777655554432112223334556666666655555555555544
No 57
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=55.69 E-value=48 Score=25.87 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=5.7
Q ss_pred HHHHHHHhhHHHHHHH
Q 041515 348 SVLSEIRKREDEYSKL 363 (762)
Q Consensus 348 ~~~~e~~~k~e~~~~L 363 (762)
++.+++..-.+.+.++
T Consensus 37 ~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 37 EIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.65 E-value=1.2e+02 Score=27.13 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 041515 285 YLEQLDEQVGAKKHNLVE 302 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~ 302 (762)
-+..|+..+..+++-+..
T Consensus 25 ei~~L~~~L~~AEeaL~~ 42 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA 42 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455544444444444
No 59
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=54.43 E-value=49 Score=28.57 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515 298 HNLVELELQWDALKESLEEKKRSLEESLY 326 (762)
Q Consensus 298 ~~l~~L~~qWe~~r~pl~~~~~~l~~~~~ 326 (762)
.++.+|...|+.......++.+.|.+++.
T Consensus 85 ~~l~~l~~rw~~L~~~~~~R~~~L~~aL~ 113 (118)
T 3uul_A 85 EQMTLLNARWEALRVESMERQSRLHDALM 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999999999888888888877643
No 60
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.93 E-value=13 Score=42.64 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=5.1
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 382 RIKEITKNSRKVDTDIERILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 382 RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~R 420 (762)
.+-|...-+.+..++..+=-.+++.+|.+.........+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~ 451 (575)
T 2i1j_A 413 EIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDE 451 (575)
T ss_dssp -----------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555566666655555555444
No 61
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=53.63 E-value=1.3e+02 Score=29.80 Aligned_cols=105 Identities=13% Similarity=0.225 Sum_probs=76.5
Q ss_pred HhhHHHHHHHHHHHhcCCCc-cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 041515 354 RKREDEYSKLSADLEKQPKV-ASRRSYIERIKEITKNSRKVDTDIERILKETRELQL----ESNSIQERLHRTYAVVDDM 428 (762)
Q Consensus 354 ~~k~e~~~~L~~~~~~~~k~-~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqk----ein~~~~~l~Rtf~v~del 428 (762)
+.-......|+.-+.++|.. ..|+.++.=|.||-+.|||==+-++.+..-....+| +-...=-+-.+.|.-+=--
T Consensus 94 qel~~rA~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~~k~~le~~KreFVkySKrFS~TLKe 173 (213)
T 3ajm_A 94 QDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKT 173 (213)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhHhhHHHHH
Confidence 33444556688889999997 789999999999999999877666666443321111 1112223455678888888
Q ss_pred HHhhcCccchHHHHHHHHHHhhHHHHHHHH
Q 041515 429 IFREAKKDQSFEQVSEKILATDRVRREIAE 458 (762)
Q Consensus 429 if~~akkd~~~~~l~~~i~~tg~~~rei~~ 458 (762)
.|||-+..--|...-..|..|..+++.+++
T Consensus 174 YFkd~~~~~Vf~SAn~LI~QTn~il~Tvk~ 203 (213)
T 3ajm_A 174 YFKDGKAINVFVSANRLIHQTNLILQTFKT 203 (213)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcceehHHHHHHHHHHHHHHHHHHH
Confidence 999988877788888888899999888876
No 62
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=53.27 E-value=1.3e+02 Score=27.25 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=10.3
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHH
Q 041515 388 KNSRKVDTDIERILKETRELQLE 410 (762)
Q Consensus 388 ~nirKQ~~eI~Kil~dtr~lqke 410 (762)
+-|.|+=++-.+|+++-..+|.+
T Consensus 85 ~~Ld~eI~~qe~iI~nFe~Iq~~ 107 (119)
T 2avr_X 85 KKLEAEMEQQKAVISDFEKIQAL 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455555555443
No 63
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=51.90 E-value=1.8e+02 Score=28.38 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHH--------------HHHH-------------hhchHHHHHHHHH
Q 041515 286 LEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSL--------------EESL-------------YANELEAQAKLLK 338 (762)
Q Consensus 286 ~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l--------------~~~~-------------~~~~~e~~~k~~~ 338 (762)
+...+..+++.+-++-.-...|.-+-.-+.+--..| ..-. ...-.|.-+-+++
T Consensus 27 lkevekvldsvepkltssgtkwrvvaqhikdicsdlnqifnkedpryevvqagasaahdfdvryldihkhgreiarllek 106 (294)
T 3caz_A 27 LKEVEKVLDSVEPKLTSSGTKWRVVAQHIKDICSDLNQIFNKEDPRYEVVQAGASAAHDFDVRYLDIHKHGREIARLLEK 106 (294)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSSCCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhccCccccCCCcchhHHHHHHHHHHHHHHHHhcccCcchHHHHcccccccccchhhhhHHhhhHHHHHHHHH
Confidence 344556666666677777777765544443321111 1000 0112344445667
Q ss_pred HHHHHHHHHHHHHHH------HhhHHHHHHHHHHHhcCCCc---cChH---------HHHHHHHHHHhhhhhhHHhHHHH
Q 041515 339 LREVELERQSVLSEI------RKREDEYSKLSADLEKQPKV---ASRR---------SYIERIKEITKNSRKVDTDIERI 400 (762)
Q Consensus 339 ik~~~~~~~~~~~e~------~~k~e~~~~L~~~~~~~~k~---~~R~---------~Yt~RI~Eiv~nirKQ~~eI~Ki 400 (762)
|+..++.++.+..++ |...+.|+-...++++-.|+ ++|+ .|-+++-||++|..|-=....+|
T Consensus 107 iqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaYkqvcsDiInkMnkll~n~~ri 186 (294)
T 3caz_A 107 IQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSSVCADLIQKMETVWKKHVSI 186 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766665443 44556666677777775554 4443 38888888888776655555555
Q ss_pred HHHH
Q 041515 401 LKET 404 (762)
Q Consensus 401 l~dt 404 (762)
+.+.
T Consensus 187 inea 190 (294)
T 3caz_A 187 FAEA 190 (294)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=51.54 E-value=1.1e+02 Score=25.89 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 041515 284 FYLEQLDEQVGAKKHNLVELEL 305 (762)
Q Consensus 284 ~n~~kL~~~~~~~~~~l~~L~~ 305 (762)
+-+.+|+..|+++-..+.-|..
T Consensus 6 ElleqLE~KIq~avdtI~lLqm 27 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQM 27 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567787777777666655543
No 65
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=51.26 E-value=46 Score=28.66 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515 297 KHNLVELELQWDALKESLEEKKRSLEESLY 326 (762)
Q Consensus 297 ~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~ 326 (762)
..++.+|...|+.......++.+.|.+.+.
T Consensus 84 ~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~ 113 (119)
T 3uun_A 84 QEQMNLLNSRWECLRVASMEKQSNLHRVLM 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888999999999888888888877654
No 66
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=51.02 E-value=1.4e+02 Score=26.83 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=15.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 041515 289 LDEQVGAKKHNLVELELQWDALKESLEEKKRSLEE 323 (762)
Q Consensus 289 L~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~ 323 (762)
|++.+........+|..+|...+..=..+...|.+
T Consensus 18 l~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~ 52 (112)
T 1x79_B 18 ANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVL 52 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555555544444444444443
No 67
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=50.35 E-value=1.8e+02 Score=27.82 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 041515 453 RREIAEYEKKLA 464 (762)
Q Consensus 453 ~rei~~le~qi~ 464 (762)
.+||+.+|..|.
T Consensus 168 ~~eI~~IE~sI~ 179 (196)
T 1fio_A 168 HQELLKLEKSMA 179 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455554444
No 68
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=50.11 E-value=1.8e+02 Score=27.91 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHH
Q 041515 382 RIKEITKNSRKVDTDIERILKETRELQLESNS 413 (762)
Q Consensus 382 RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~ 413 (762)
||--+..-++--+.-..|+..|.+.||..++.
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444433
No 69
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=50.02 E-value=1.1e+02 Score=26.28 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 041515 311 KESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVL 350 (762)
Q Consensus 311 r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~ 350 (762)
|..|+..+.+|+..+..-+.+....-.+|.+++.++.++-
T Consensus 20 ~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~L 59 (101)
T 1d7m_A 20 REQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETL 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666555444444444456666666554433
No 70
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=49.98 E-value=2.4e+02 Score=29.32 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=12.6
Q ss_pred HHHHHhhccC-CchhHHHHHHHHHHHHH
Q 041515 545 TNKLVMGQVG-FNFPIFLTVIHYAVAWI 571 (762)
Q Consensus 545 ~NK~vl~~~g-F~~Pl~Lt~~q~l~a~i 571 (762)
+.-+++...+ +..++.+.++=.++..+
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~ 201 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVAL 201 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3334444455 66565555443333333
No 71
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.26 E-value=1e+02 Score=34.70 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 331 EAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 331 e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
+.+.-+.+.++++++++.++++++..++....+...+=++|-
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~ 158 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTH 158 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 333445667777778877777777766666666555555553
No 72
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=48.79 E-value=2.4e+02 Score=28.98 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=4.5
Q ss_pred chhhhhhhHH
Q 041515 472 NVDKLQADVD 481 (762)
Q Consensus 472 nle~i~~D~~ 481 (762)
+++...+|++
T Consensus 224 ~~~p~~e~~~ 233 (273)
T 3s84_A 224 RVEPYGENFN 233 (273)
T ss_dssp HHTTHHHHHH
T ss_pred HhHhhHHHHH
Confidence 3444444443
No 73
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.78 E-value=33 Score=25.40 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=28.2
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515 385 EITKNSRKVDTDIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 385 Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l 418 (762)
|++-+|.|-+.||.|.-+-+..+|+....+.+..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6778899999999999998888888887776543
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=46.59 E-value=1.9e+02 Score=27.24 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWDA 309 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe~ 309 (762)
.++.|+..+.+...++..|..+++.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIAL 93 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444433
No 75
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.30 E-value=2e+02 Score=27.26 Aligned_cols=126 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHh
Q 041515 309 ALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITK 388 (762)
Q Consensus 309 ~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~ 388 (762)
.+...|.+++..++..+... +.++..+...+.++..+..+....+..+.+|..++.
T Consensus 13 n~qs~LeD~L~~~R~el~~~----~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~-------------------- 68 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQ----KAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIA-------------------- 68 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------------------
T ss_pred HhhccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------------------
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccch-----HHHHHHHHHHhhHHHHHHHHHHHHH
Q 041515 389 NSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIFREAKKDQS-----FEQVSEKILATDRVRREIAEYEKKL 463 (762)
Q Consensus 389 nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif~~akkd~~-----~~~l~~~i~~tg~~~rei~~le~qi 463 (762)
..++-=...-...+.+.+|+..++..| |...-+||- +|++..+ -.++-+.+.++..+ +..++.|+
T Consensus 69 ---~E~~~R~~aE~~~~~ie~ElEeLTasL---FeEAN~MVa-~ar~~~~~~e~r~~~L~~ql~e~~~~---l~~lq~ql 138 (154)
T 2ocy_A 69 ---KENELRTKAEEEADKLNKEVEDLTASL---FDEANNMVA-DARKEKYAIEILNKRLTEQLREKDTL---LDTLTLQL 138 (154)
T ss_dssp ---HHHHHHHHHHTHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHhc
Q 041515 464 AAVAS 468 (762)
Q Consensus 464 ~~~~~ 468 (762)
...+.
T Consensus 139 ~~LK~ 143 (154)
T 2ocy_A 139 KNLKK 143 (154)
T ss_dssp HHHHH
T ss_pred HHHHH
No 76
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=46.19 E-value=34 Score=26.50 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHhhHHH
Q 041515 285 YLEQLDEQVGAK--KHNLVELELQWDALKESL 314 (762)
Q Consensus 285 n~~kL~~~~~~~--~~~l~~L~~qWe~~r~pl 314 (762)
-+..|++.+.+. .-|+.+|...||+.+..+
T Consensus 10 kvkaleekvkalggggrieelkkkweelkkki 41 (67)
T 1lq7_A 10 KVKALEEKVKALGGGGRIEELKKKWEELKKKI 41 (67)
T ss_dssp HHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 334444444432 347888888998765543
No 77
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=45.76 E-value=2.5e+02 Score=28.37 Aligned_cols=151 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 041515 244 DESLMEAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEE 323 (762)
Q Consensus 244 ~~~l~~~~~~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~ 323 (762)
++.+.++...-..++...+..+.......+.|.+..+++ .+....++.+|..+|........+....|++
T Consensus 144 v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~~~~~~----------~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~~ 213 (322)
T 1u4q_A 144 VQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIG----------KEEIQQRLAQFVDHWKELKQLAAARGQRLEE 213 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhchHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHH
Q 041515 324 SLYANELEAQAK---------------------LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIER 382 (762)
Q Consensus 324 ~~~~~~~e~~~k---------------------~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~R 382 (762)
.+.-........ +..++.+-.+.+....++...+..+.+|....+.+-...+-.+ ..
T Consensus 214 ~~~~~qf~~~~~~~~~Wl~~~e~~l~~~~~g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~--~~ 291 (322)
T 1u4q_A 214 SLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHV--EN 291 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh--HH
Q ss_pred HHHHHhhhhhhHHhHHHHHHHHHH
Q 041515 383 IKEITKNSRKVDTDIERILKETRE 406 (762)
Q Consensus 383 I~Eiv~nirKQ~~eI~Kil~dtr~ 406 (762)
|.+-+..+.+.=+++.....+.+.
T Consensus 292 i~~~~~~l~~rw~~l~~~~~~R~~ 315 (322)
T 1u4q_A 292 ITAKMKGLKGKVSDLEKAAAQRKA 315 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 78
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=45.00 E-value=2.6e+02 Score=28.22 Aligned_cols=12 Identities=8% Similarity=0.396 Sum_probs=7.5
Q ss_pred hhhHHHHHHHhh
Q 041515 477 QADVDVIMKENE 488 (762)
Q Consensus 477 ~~D~~~i~~en~ 488 (762)
..|++.+-+.+.
T Consensus 267 ~~D~~~fi~~~~ 278 (305)
T 2efl_A 267 KNDSQLVIEAYK 278 (305)
T ss_dssp HHHHHHHHHHHC
T ss_pred hhhHHHHHHHcC
Confidence 466766666664
No 79
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=44.10 E-value=47 Score=38.09 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHhh
Q 041515 440 EQVSEKILATDRVRREIAEYEKKLAAVASRSLNVDKLQADVDVIMKENE 488 (762)
Q Consensus 440 ~~l~~~i~~tg~~~rei~~le~qi~~~~~k~~nle~i~~D~~~i~~en~ 488 (762)
++=++-.+.+-.+.....+|-..|+...-.+ -..+++.|-.||.
T Consensus 504 ~eR~~~~ekn~~lq~qL~~L~~el~~~r~~~-----k~t~~D~lh~en~ 547 (575)
T 2i1j_A 504 ADRRTLAERNERLHNQLKALKQDLARSCDET-----KETAMDKIHRENV 547 (575)
T ss_dssp GGCCCHHHHCHHHHHHHHHHHHHHHTTBCGG-----GCCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhh-----hcchhHHHHHHhh
Confidence 4445556666677777777776666544322 2333555556664
No 80
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=43.72 E-value=72 Score=35.81 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=19.7
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 391 RKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIF 430 (762)
Q Consensus 391 rKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif 430 (762)
+|+++|......+.++|.+++..+..++...-.-+++++.
T Consensus 67 k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 67 FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666655555555544443333333333
No 81
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=43.66 E-value=1.3e+02 Score=25.44 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 313 SLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 313 pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
-|+.|.+.|+-.+..-+.|-.+=-.+++....++..+...+..|+..++.|..++-
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 46666666665555433332222235666667777777778888888888777664
No 82
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=43.39 E-value=1.2e+02 Score=26.52 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhh---HHHHHHHHHHHhcCCCc-cChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 041515 340 REVELERQSVLSEIRKR---EDEYSKLSADLEKQPKV-ASRRSYIERIKEITKNSRKVDTDIERILKETREL 407 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k---~e~~~~L~~~~~~~~k~-~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~l 407 (762)
+.+.+++.++..+|++. .+=..++..-|+.=|+- .+.+. ...+.|..++|.+.+.|+.|...=..++
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444332 44567788899999985 44444 9999999999999999998876544444
No 83
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.97 E-value=1.1e+02 Score=33.55 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 332 AQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 332 ~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
.++...+.++++.+++.++++++..++....+...+=++|-
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~ 106 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPW 106 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33445667777777777777777777666666555555554
No 84
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=42.97 E-value=2.2e+02 Score=26.91 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515 379 YIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 379 Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l 418 (762)
|..+|..+...++--+.-..=.-.-...||++|..+.+.|
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444433333333333344444444444443
No 85
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.56 E-value=75 Score=35.30 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 396 DIERILKETRELQLESNSIQERLHRTY 422 (762)
Q Consensus 396 eI~Kil~dtr~lqkein~~~~~l~Rtf 422 (762)
|...+..+.++|.+++..+..++...-
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELK 96 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 86
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.07 E-value=54 Score=36.45 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
.+.+.++++.+++.++++++..++....+...+=++|-
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~ 111 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITH 111 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34566777777777777777777766666666655553
No 87
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=41.92 E-value=1e+02 Score=26.23 Aligned_cols=27 Identities=4% Similarity=0.188 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 041515 380 IERIKEITKNSRKVDTDIERILKETRE 406 (762)
Q Consensus 380 t~RI~Eiv~nirKQ~~eI~Kil~dtr~ 406 (762)
..-+-|....+-+++.|+..++.|...
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667778888888888888754
No 88
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.75 E-value=79 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
.|++++..++.-.+||+.|++.++.|+.++.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777888888887777766655
No 89
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=41.62 E-value=4.2e+02 Score=29.68 Aligned_cols=89 Identities=16% Similarity=0.040 Sum_probs=40.4
Q ss_pred HHHHHHHh-cccccHHHHHHHHHHHHhhheeeecCccccHH-HHHHHHHHHHHHH-HHHH---HHHHhhh-cCCCCHHHH
Q 041515 634 VLAEFILF-SKTISYKKVLALAIVSVGVAVATVTDLEFNIF-GAIIAVAWIIPSA-INKI---LWSNLQQ-QGNWTALAL 706 (762)
Q Consensus 634 vll~~l~l-gek~s~~~~lsLlli~~GV~la~~~d~~fs~~-G~ilalls~l~~A-l~~V---~~kkllk-~~~lns~~L 706 (762)
+++++++. +.|++...... ..+..+|++.+..+.-.+++ .++.++++.+..- .+.. ..++.++ +..++...+
T Consensus 270 ~~~s~l~~~~gK~s~~~~~n-G~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~v 348 (490)
T 3hd6_A 270 VAISSALHKKGKLDMVHIQN-ATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNL 348 (490)
T ss_dssp HHHHHHTSTTCCCCHHHHHH-GGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHH
T ss_pred HHHHHHHHhcCCCCHHHhhh-ceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccchHH
Confidence 44444443 35677644332 33444455544434323333 3333333333222 2121 1222222 234677777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041515 707 MWKTTPVTVFFLLALMP 723 (762)
Q Consensus 707 l~y~~p~s~i~Ll~~~~ 723 (762)
-.....++.+...+++.
T Consensus 349 HGv~Gi~G~l~~glfa~ 365 (490)
T 3hd6_A 349 HGIPGIIGGIVGAVTAA 365 (490)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 77777777777655443
No 90
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=41.38 E-value=1.2e+02 Score=27.41 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041515 376 RRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERL 418 (762)
Q Consensus 376 R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l 418 (762)
...+.+|+-.+-+++++-++++.++-...+.++.+++...+++
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3448899999999999999999999999999999988876653
No 91
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.76 E-value=74 Score=33.54 Aligned_cols=88 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHhhhhcCCcccccccccccCChhHHHHHHhhhhhhhcCCCCCCCCCChhHHHHHHhhHHHHHHHHhcCCCCCCccccc
Q 041515 48 LLNSLKSGGVSIPADVSSIKDLTSETLVSICGQSLNLIFNTMTFGTSLPHSMAEKFKICTDISSAIKNLGYIGDISYYKF 127 (762)
Q Consensus 48 i~~sl~~~g~~~~~~~~sl~~ftte~~v~~~~~cl~~I~p~~~l~~~lP~~msaRfr~~~~lA~a~k~~Gy~~digy~tf 127 (762)
|.+=|..-|++-+=...+|+.-|+-.++.+.-=.++.|||++.++.. +.--.+....|.+||+..|.=-++
T Consensus 21 i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~idp~~~~~~~---------k~eeev~~~lK~L~YP~~isKS~L 91 (315)
T 2ve7_A 21 LCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDT---------KFEEEVPRIFKDLGYPFALSKSSM 91 (315)
T ss_dssp HHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTSTTCCCCSS---------CHHHHHHHHHHHTTCSSCCCHHHH
T ss_pred HHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcCCCCccCCC---------ChHHHHHHHHHHcCCCceeCHHHh
Q ss_pred ccCChHH----HHHHHHHHHH
Q 041515 128 LYPSEED----LYKLIRFLVE 144 (762)
Q Consensus 128 LY~~~~d----lr~l~~fLie 144 (762)
--++..- +=-++-||++
T Consensus 92 ~a~g~pHsWp~~Lg~L~WLve 112 (315)
T 2ve7_A 92 YTVGAPHTWPHIVAALVWLID 112 (315)
T ss_dssp HTTTSTTTHHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHH
No 92
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.62 E-value=1.7e+02 Score=27.14 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 340 REVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
++++.++.++.+++..-++...+|+.+++
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555556665555
No 93
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.29 E-value=1e+02 Score=26.09 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLS 364 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~ 364 (762)
++++.+.+-+++..|++.+++..+.|+
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777776666666654
No 94
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=38.88 E-value=1.4e+02 Score=27.46 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=18.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHH
Q 041515 289 LDEQVGAKKHNLVELELQWDALKES 313 (762)
Q Consensus 289 L~~~~~~~~~~l~~L~~qWe~~r~p 313 (762)
.+..|+.+-+++..+-.+|...+.+
T Consensus 32 Vk~EVq~sl~~l~~l~~~w~~l~~~ 56 (130)
T 4dnd_A 32 VRGEVQKAVNTARGLYQRWCELLQE 56 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4667888888999999999876643
No 95
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=38.57 E-value=59 Score=34.25 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHH----------HHHHhhhhhhHHhHHHHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERI----------KEITKNSRKVDTDIERILKETREL 407 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI----------~Eiv~nirKQ~~eI~Kil~dtr~l 407 (762)
+|..+-..++.+..+++..+..+.+|-.+..+||+ ..+.+.. -.+.+.-++=.+.+.+...+++.+
T Consensus 156 ~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr----~~fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~~~~~~i~~~ 231 (339)
T 1sig_A 156 QFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK----KNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRA 231 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCH----HHHHHHHTTTCSSGGGTHHHHTTCSHHHHHGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH----HHHHHHcccccCcHHHHHHHhhccchHHHHHHHhHHHHHHH
Confidence 45666677888888888888888888766666654 3333321 222222223334444445555555
Q ss_pred HHHHHHHHHHH
Q 041515 408 QLESNSIQERL 418 (762)
Q Consensus 408 qkein~~~~~l 418 (762)
|..+..+....
T Consensus 232 q~kl~~ie~~~ 242 (339)
T 1sig_A 232 LQKLQQIEEET 242 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 96
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=38.37 E-value=2.3e+02 Score=25.69 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHH
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEI 386 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Ei 386 (762)
..+....++..+.+++.++...+.+++...+.+.|-.--.++
T Consensus 35 ~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L 76 (119)
T 2avr_X 35 QADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQEL 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344444555555555555555555554444444443333333
No 97
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.74 E-value=69 Score=29.16 Aligned_cols=67 Identities=16% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC--ccChHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPK--VASRRSYIERIKEITKNSRKVDTDIERILKET 404 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k--~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dt 404 (762)
+|.+++..++.+..|+..-......|+..+...-. ......|-..|.++-..+.+=+.||.+.+.|-
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555555555555444444444444332211 13344566666666666666666666655443
No 98
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=37.23 E-value=61 Score=31.67 Aligned_cols=15 Identities=0% Similarity=-0.006 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhHHH
Q 041515 300 LVELELQWDALKESL 314 (762)
Q Consensus 300 l~~L~~qWe~~r~pl 314 (762)
|.+|..+-+.|+..|
T Consensus 108 lEelr~kL~P~~eEL 122 (191)
T 1nfn_A 108 MEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHH
Confidence 333333333333333
No 99
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=37.12 E-value=51 Score=31.57 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 041515 342 VELERQSVLSEI 353 (762)
Q Consensus 342 ~~~~~~~~~~e~ 353 (762)
+|+++.-..+++
T Consensus 133 lR~kl~P~~eeL 144 (165)
T 1gs9_A 133 LRVRLASHLRKL 144 (165)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 100
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.75 E-value=1.3e+02 Score=23.29 Aligned_cols=32 Identities=6% Similarity=0.072 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHH
Q 041515 382 RIKEITKNSRKVDTDIERILKETRELQLESNS 413 (762)
Q Consensus 382 RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~ 413 (762)
++-+...++++..+++.++.+++..++.++++
T Consensus 27 ~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 27 EFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555566666666666666654
No 101
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=36.41 E-value=77 Score=35.57 Aligned_cols=38 Identities=3% Similarity=0.101 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
.+.+.++++++++.++++++..++....+...+=++|-
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~ 113 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVH 113 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 44566777777777777777666666655555545543
No 102
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.34 E-value=56 Score=29.90 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC--ccChHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPK--VASRRSYIERIKEITKNSRKVDTDIERILKET 404 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k--~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dt 404 (762)
+|.+++..++.+..|+..-......|+..+..+-. ......|-..|.++-..+.+=+.||.+.+.|-
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444444433332211 13345566667777667777677776665543
No 103
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.84 E-value=1.5e+02 Score=32.39 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=26.7
Q ss_pred HHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 386 ITKNSRKVDTDIERILKETRELQLESNSIQERLHRTYAVVDDMIF 430 (762)
Q Consensus 386 iv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~Rtf~v~delif 430 (762)
|-..+-||+..+.|-+.+...+.+|+.+++..+.+--..+.+...
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~ 69 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYP 69 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334555666666666666666666666666666655555555533
No 104
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=35.47 E-value=2.7e+02 Score=28.49 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
+.+....++..-++.|......+.
T Consensus 200 k~~k~~~~~~~a~~~Y~~~v~~~n 223 (312)
T 3abh_A 200 KIEKCKQDVLKTKEKYEKSLKELD 223 (312)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 105
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=35.12 E-value=3e+02 Score=26.06 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
+|+.+..++++......--+-...+|+.++.
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id 108 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSID 108 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 106
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=35.04 E-value=43 Score=30.37 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=39.9
Q ss_pred HhhHHHHHHHHhcCCCCCCcccccccCChHHHHHHHHHHHHHh
Q 041515 104 KICTDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVERL 146 (762)
Q Consensus 104 r~~~~lA~a~k~~Gy~~digy~tfLY~~~~dlr~l~~fLiekL 146 (762)
.+...|.+++.+.||...++=.++=.|+.+|...+|.||..++
T Consensus 18 ~~~~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~i 60 (120)
T 2igp_A 18 QCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL 60 (120)
T ss_dssp HHHHHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhc
Confidence 4566889999999999999999999999999999999999999
No 107
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=34.96 E-value=2.6e+02 Score=30.46 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSK 362 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~ 362 (762)
.+.-.-||..++....++.++..|=-..-.....=-.+|+.+.+ | ...+|++++.++..+..+|+..+.+.++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA------Q-GQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567777777766666666554444333332233333221 1 2236666666666666666655555554
Q ss_pred H
Q 041515 363 L 363 (762)
Q Consensus 363 L 363 (762)
+
T Consensus 469 ~ 469 (471)
T 3mq9_A 469 L 469 (471)
T ss_dssp H
T ss_pred h
Confidence 4
No 108
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=34.88 E-value=3.4e+02 Score=26.76 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhcCccc
Q 041515 395 TDIERILKETRELQLESNSIQ----------ERLHRTYAVVDDMIFREAKKDQ 437 (762)
Q Consensus 395 ~eI~Kil~dtr~lqkein~~~----------~~l~Rtf~v~delif~~akkd~ 437 (762)
.+|.+|+..++.+=++.|-+. |.--|-|+|+=+-|-+-|.+..
T Consensus 77 ~~i~~i~~~I~~Ia~qtnlLALNAaIEAAraGe~GrGFaVVA~Evr~La~~t~ 129 (213)
T 3g67_A 77 RSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETN 129 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 456666666666666666542 4566999999998888887744
No 109
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=34.60 E-value=2.8e+02 Score=25.79 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=11.7
Q ss_pred HHHhhhhhhHHhHHHHHHHH
Q 041515 385 EITKNSRKVDTDIERILKET 404 (762)
Q Consensus 385 Eiv~nirKQ~~eI~Kil~dt 404 (762)
++|...+.-+.+...++.|+
T Consensus 86 p~V~~y~~Ae~~l~~LL~~I 105 (151)
T 2pih_A 86 PVIQEFRDSQMEVNDLLQLV 105 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666554
No 110
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=33.71 E-value=3.4e+02 Score=26.44 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESL 325 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~ 325 (762)
-++.+...+.+.-..+..|..+| .+++.++.+++
T Consensus 87 ~Le~~r~~l~~~l~~~~~L~~~~-------~~k~q~~~~~l 120 (192)
T 2p22_C 87 DLHEQKDKVQALLENARILESKY-------VASWQDYHSEF 120 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 34444444444444566677777 44455554444
No 111
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.68 E-value=1.3e+02 Score=28.49 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=28.8
Q ss_pred HHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 041515 308 DALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLS 364 (762)
Q Consensus 308 e~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~ 364 (762)
+..+..+.++++.|++++..+......-.+++..++.+...+.+.++.-++++++|.
T Consensus 74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666655544433333334444555555555555555555454443
No 112
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=33.65 E-value=2.6e+02 Score=25.98 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhH------HHHHHHHHHHH
Q 041515 288 QLDEQVGAKKHNLVELELQWDALKE------SLEEKKRSLEE 323 (762)
Q Consensus 288 kL~~~~~~~~~~l~~L~~qWe~~r~------pl~~~~~~l~~ 323 (762)
.|.+.|++..+++.+|..++..++. -+.+||..+++
T Consensus 63 ~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~ 104 (140)
T 1xaw_A 63 SLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQ 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 5666777777777777776655331 12445555554
No 113
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=33.60 E-value=26 Score=29.43 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=25.3
Q ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHHhccccc
Q 041515 441 QVSEKIL-ATDRVRREIAEYEKKLAAVASRSLN 472 (762)
Q Consensus 441 ~l~~~i~-~tg~~~rei~~le~qi~~~~~k~~n 472 (762)
++++.++ +-|++.++|.|||+++..++.|+.+
T Consensus 30 ~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~ 62 (77)
T 3mtu_E 30 EALQQLRVNYGSFVSEYNDLEEKVAHAKEENLN 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4444444 6799999999999999999888733
No 114
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.14 E-value=3.4e+02 Score=26.15 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHhhHHH-HHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 041515 283 EFYLEQLDEQVGAKKHNLV-ELELQWDALKESLEEKKRSLEESLYAN 328 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~-~L~~qWe~~r~pl~~~~~~l~~~~~~~ 328 (762)
.+-+++||..+.+...+.. .....|-.+...+.+.++.-++.+..-
T Consensus 11 ~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g 57 (174)
T 2p22_A 11 HEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAID 57 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999888776 888888888888888877777766533
No 115
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=33.05 E-value=1.4e+02 Score=32.81 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 041515 452 VRREIAEYEKKLAAVASRS 470 (762)
Q Consensus 452 ~~rei~~le~qi~~~~~k~ 470 (762)
+..+..++|+++...-.+-
T Consensus 83 ~~~~~~~~~~~~~~~~~~i 101 (421)
T 1ses_A 83 LEEALREKEARLEALLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3344455555555444433
No 116
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=32.77 E-value=89 Score=31.88 Aligned_cols=94 Identities=10% Similarity=0.176 Sum_probs=60.9
Q ss_pred HHHHhhhhcCCccccc----cccc-ccCChhHHHHHHhhhhhhhcC---C-C-CCCC----CCCh------hHHHHHHhh
Q 041515 47 ILLNSLKSGGVSIPAD----VSSI-KDLTSETLVSICGQSLNLIFN---T-M-TFGT----SLPH------SMAEKFKIC 106 (762)
Q Consensus 47 ii~~sl~~~g~~~~~~----~~sl-~~ftte~~v~~~~~cl~~I~p---~-~-~l~~----~lP~------~msaRfr~~ 106 (762)
=|+..|+++|+.+.++ .+.| +.=||+.+-..-.+||..+-. . . .+|. ..|. +...=||.|
T Consensus 18 eIv~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~~~~g~~~e~~~~~~~~~~~~~pel~~~si~~l~~~r~l 97 (250)
T 2ve7_C 18 EIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSNLVTHL 97 (250)
T ss_dssp HHHHHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHHHHHCCCSGGGSCCCSSCCCSCGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHhccchhhcccChhhHHHHHHHHHHHHHH
Confidence 3678899999874211 1345 556788877777777774422 1 1 1211 0121 233456666
Q ss_pred HHHHHHHHhcCCCCCCcccccccCChHHHHHHHHHHHH
Q 041515 107 TDISSAIKNLGYIGDISYYKFLYPSEEDLYKLIRFLVE 144 (762)
Q Consensus 107 ~~lA~a~k~~Gy~~digy~tfLY~~~~dlr~l~~fLie 144 (762)
..+... +|+. |-+|.-++-|..+-+|++|-.||-
T Consensus 98 ~~~l~~---~gv~-DFtl~DL~kP~~~Rt~~iLSalIN 131 (250)
T 2ve7_C 98 DSFLPI---CRVN-DFETADILCPKAKRTSRFLSGIIN 131 (250)
T ss_dssp HHHHHH---TTCC-CCCHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHH---cCCC-CCcHhHhcCCchHHHHHHHHHHHH
Confidence 666554 5886 999999999999999999888874
No 117
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.96 E-value=56 Score=35.74 Aligned_cols=21 Identities=5% Similarity=0.090 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcc
Q 041515 449 TDRVRREIAEYEKKLAAVASR 469 (762)
Q Consensus 449 tg~~~rei~~le~qi~~~~~k 469 (762)
-|-+-|-+.+|=..|+....+
T Consensus 163 ~Giipr~~~~lF~~i~~~~~~ 183 (403)
T 4etp_A 163 DGIIPSTISHIFNWINKLKTK 183 (403)
T ss_dssp TSHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhHHHHHHHHHHhhhcc
Confidence 377888888888888765543
No 118
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=31.81 E-value=1.3e+02 Score=26.09 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH---H-HhhH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSE---I-RKRE 357 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e---~-~~k~ 357 (762)
|..+-.+|.+++|+.++....+.++-..+|.--.++|.. + ....+.++..||+.+-+++.. + +..|
T Consensus 5 ~~~~~~Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~---k-------i~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YE 74 (92)
T 3vp9_A 5 VSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDF---K-------MNQQLAEMQQIRNTVYERELTHRKMKDAYE 74 (92)
T ss_dssp ------------CCTTTTTTTTHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556888888888888888777665555433333211 1 222345555555554443332 2 2347
Q ss_pred HHHHHHHHHHhcCCC
Q 041515 358 DEYSKLSADLEKQPK 372 (762)
Q Consensus 358 e~~~~L~~~~~~~~k 372 (762)
+.+..|+.+++..+.
T Consensus 75 eEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 75 EEIKHLKLGLEQRDH 89 (92)
T ss_dssp HHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHcCC
Confidence 788889999887654
No 119
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.75 E-value=2.7e+02 Score=26.83 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLY 326 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~ 326 (762)
.++.-+|++++.++...++..| |..+.++..+|++.+.
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~L-------r~ql~akr~EL~aL~~ 106 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSAL-------RQQLISKRYEYNALLT 106 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 4667777777777666666655 3344455555555544
No 120
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=31.52 E-value=2.5e+02 Score=24.21 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 041515 335 KLLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILKETRELQLESNSI 414 (762)
Q Consensus 335 k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~ 414 (762)
-+.+|++++.+-..+..+|...+....+|..+-+.. ...|. +-+-+..-...|.++|..+..+.
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~-----w~eyn-----------~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQY-----QREYS-----------EFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666555554443311 11121 12222333445666666666666
Q ss_pred HHHHHH
Q 041515 415 QERLHR 420 (762)
Q Consensus 415 ~~~l~R 420 (762)
+.+|+|
T Consensus 87 ~~qLdk 92 (96)
T 3q8t_A 87 QMQLDK 92 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 121
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=31.08 E-value=2.1e+02 Score=23.21 Aligned_cols=42 Identities=10% Similarity=0.285 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 378 SYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQERLH 419 (762)
Q Consensus 378 ~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~l~ 419 (762)
-|..++-|+-..+.++.+++..--.+..+++..+++++..|+
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888877888888888888877664
No 122
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.98 E-value=95 Score=34.09 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
++++.++.++.+++..+++......+++.+++.
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 61 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIG 61 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444444444444
No 123
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=30.63 E-value=2.3e+02 Score=31.75 Aligned_cols=31 Identities=3% Similarity=0.093 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
+..++.++++++.++++..++...++++++.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777666666555553
No 124
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.01 E-value=4.4e+02 Score=30.14 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 041515 403 ETRELQLESNSIQER 417 (762)
Q Consensus 403 dtr~lqkein~~~~~ 417 (762)
..+.+|+||+.+...
T Consensus 568 ~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 568 ESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 345566666665554
No 125
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=29.45 E-value=1.7e+02 Score=25.26 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 041515 377 RSYIERIKEITKNSRKVDTDIERILKETRELQLESNSIQE 416 (762)
Q Consensus 377 ~~Yt~RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~ 416 (762)
+.|-.=|-++-..|..-..|=.++..+...++.++..+..
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455444444333333334444444444445554444443
No 126
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.39 E-value=33 Score=29.30 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDA 309 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~ 309 (762)
..-+.+|....++..+.+.++-.+|+.
T Consensus 55 ~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 55 HEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556889999999999999999999974
No 127
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=28.95 E-value=4.1e+02 Score=29.97 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH---HHHHHHHHHHh---hHHHHHHHHHHHhcCCCc
Q 041515 300 LVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVEL---ERQSVLSEIRK---REDEYSKLSADLEKQPKV 373 (762)
Q Consensus 300 l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~---~~~~~~~e~~~---k~e~~~~L~~~~~~~~k~ 373 (762)
+.++=..|-+||.....+-.+..-+ +++++++-++.+.. .+.++++-++. +++..+.|.+.+.
T Consensus 366 l~~iL~~f~~~R~~v~~rR~~~~L~------k~~~r~hilegl~~a~~~id~vI~iIr~s~~~~~a~~~L~~~f~----- 434 (514)
T 2inr_A 366 IRQIIDSYLNHQIEVVANRTKFELD------NAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYE----- 434 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSHHHHHHHHHTTSS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC-----
Confidence 5666678999999888773332211 11112222222211 23333433342 3455555554332
Q ss_pred cChHHHHHHHHHHHhhhhh-hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041515 374 ASRRSYIERIKEITKNSRK-VDTDIERILKETRELQLESNSIQERLHR 420 (762)
Q Consensus 374 ~~R~~Yt~RI~Eiv~nirK-Q~~eI~Kil~dtr~lqkein~~~~~l~R 420 (762)
.+.. ..+.|+++ .++. -+.|++|+.+|.++++++|..+..-|.-
T Consensus 435 lse~-qa~~IL~m--~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~ 479 (514)
T 2inr_A 435 FTEE-QAEAIVML--QLYRLTNTDIVALEGEHKELEALIKQLRHILDN 479 (514)
T ss_dssp CCHH-HHHHHHTC--CGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHH-HHHHHHhc--hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2222 23456665 2222 2568889999999999999988887763
No 128
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=28.93 E-value=2e+02 Score=22.23 Aligned_cols=13 Identities=54% Similarity=0.705 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 041515 314 LEEKKRSLEESLY 326 (762)
Q Consensus 314 l~~~~~~l~~~~~ 326 (762)
|.++...|+++..
T Consensus 7 leekvkaleekvk 19 (67)
T 1lq7_A 7 LEEKVKALEEKVK 19 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 129
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=28.88 E-value=4.6e+02 Score=26.32 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=7.9
Q ss_pred hhhHHHHHHHhh
Q 041515 477 QADVDVIMKENE 488 (762)
Q Consensus 477 ~~D~~~i~~en~ 488 (762)
..|++.+-+.+.
T Consensus 260 ~~D~~~fi~~~~ 271 (301)
T 2efk_A 260 KNDSHVLIELHK 271 (301)
T ss_dssp HHHHHHHHHHTG
T ss_pred hhhHHHHHHHcC
Confidence 467777776664
No 130
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=28.68 E-value=5.2e+02 Score=26.88 Aligned_cols=49 Identities=14% Similarity=0.411 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhh
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKEITKNSR 391 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nir 391 (762)
+++.++.+.+....++..-++.|......+.. .|..|...+-++.....
T Consensus 193 ~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~-----~~~~~~~~~~~~~~~~Q 241 (350)
T 3aco_A 193 QLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQ-----GTPQYMENMEQVFEQCQ 241 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 44555667777777777777777777777763 36667654444444333
No 131
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.26 E-value=3.3e+02 Score=24.54 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.2
Q ss_pred HHHHHH
Q 041515 286 LEQLDE 291 (762)
Q Consensus 286 ~~kL~~ 291 (762)
+.+|+.
T Consensus 22 l~~lke 27 (129)
T 2fxo_A 22 FTRLKE 27 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 132
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.82 E-value=2.5e+02 Score=27.61 Aligned_cols=87 Identities=15% Similarity=-0.007 Sum_probs=47.9
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhh---hhcchhHHHHHHHhhhHHHHHHHHHHHhcccccHH-HHHHHHHHHHhhhee
Q 041515 588 AITTPFSSLFALGVVMSFATGLANTS---LKHNSVGFYQMSKIAVTPTIVLAEFILFSKTISYK-KVLALAIVSVGVAVA 663 (762)
Q Consensus 588 ~~~~~~~~l~plgl~~~l~i~l~N~S---L~yvsVs~~qmlKsas~P~~vll~~l~lgek~s~~-~~lsLlli~~GV~la 663 (762)
+++...+.+..++++.++..+++..+ +-+.|||+. .-.+.+++...++|.|.... ..+=+++..+|+=++
T Consensus 12 ~~~~k~r~l~~~alfaAliavla~i~~Ipip~~pVPiT------lQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVF 85 (198)
T 4dve_A 12 TNNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPII------LQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVL 85 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCBC------STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCB
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCcc------HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccc
Confidence 34445677787887777776666543 334444421 12334456667777554433 334455566666666
Q ss_pred eecCccc-----cHHHHHHHHH
Q 041515 664 TVTDLEF-----NIFGAIIAVA 680 (762)
Q Consensus 664 ~~~d~~f-----s~~G~ilall 680 (762)
+.+...+ ...||++++.
T Consensus 86 agg~gG~~~l~gPTgGYLiGF~ 107 (198)
T 4dve_A 86 TGGNGGAASFLGPSGGYRIAWL 107 (198)
T ss_dssp TTTBCCSGGGGSTTHHHHHHHH
T ss_pred cCCCCchhHHhcchhHHHHHHH
Confidence 5543222 2467777664
No 133
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=27.74 E-value=5.7e+02 Score=27.04 Aligned_cols=17 Identities=6% Similarity=0.044 Sum_probs=8.9
Q ss_pred cchhhhhhhHHHHHHHh
Q 041515 471 LNVDKLQADVDVIMKEN 487 (762)
Q Consensus 471 ~nle~i~~D~~~i~~en 487 (762)
.++..|..|++.+..+=
T Consensus 304 ~~~~~i~~~L~~a~~~W 320 (346)
T 2nrj_A 304 NKFKFLKPNLNAAKDSW 320 (346)
T ss_dssp TTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 44555555555554443
No 134
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=27.19 E-value=1.8e+02 Score=32.37 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 041515 404 TRELQLESNSIQ 415 (762)
Q Consensus 404 tr~lqkein~~~ 415 (762)
++.||.-++.+.
T Consensus 165 i~~l~~~~~~~~ 176 (461)
T 3ghg_B 165 LRVLRSILENLR 176 (461)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333443333333
No 135
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=26.51 E-value=5.3e+02 Score=26.29 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-----hHHHHHHHHH-------------------HHHHHHHHHHHHHH
Q 041515 297 KHNLVELELQWDALKESLEEKKRSLEESLYAN-----ELEAQAKLLK-------------------LREVELERQSVLSE 352 (762)
Q Consensus 297 ~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~-----~~e~~~k~~~-------------------ik~~~~~~~~~~~e 352 (762)
.+++.+|..+|+..+.........|++...-. ..|+..-+.. ++.+-.+-+.+..+
T Consensus 86 ~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~qF~~da~e~e~Wl~~~~e~~~~~~s~d~g~d~~s~~~LLkkh~~le~~ 165 (283)
T 3pe0_A 86 ESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQ 165 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 34788899999888888888877777654321 2222221111 11122234455566
Q ss_pred HHhhHHHHHHHHHHHhcCCCc
Q 041515 353 IRKREDEYSKLSADLEKQPKV 373 (762)
Q Consensus 353 ~~~k~e~~~~L~~~~~~~~k~ 373 (762)
+...+.....|...-+.+...
T Consensus 166 l~~~~~~i~~L~~~a~~l~~l 186 (283)
T 3pe0_A 166 LNEYKGHLSGLAKRAKAVVQL 186 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 666666677777766666543
No 136
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.27 E-value=3e+02 Score=23.40 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=33.2
Q ss_pred HHhhhhhcccCcHHHHHHHHHH---HHHhcCC------------CCChhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 250 AVTAKTSELCDPEEEYQLLKAA---AEMAFDD------------SHPTEFYLEQLDEQVGAKKHNLVELELQWDA 309 (762)
Q Consensus 250 ~~~~~~~~~~e~e~~~~~~~~~---~e~l~d~------------~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~ 309 (762)
++.....+...++.+++....+ ++.++++ ..+.++....|+...+....++..|..+-+.
T Consensus 16 ~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~ 90 (107)
T 1fxk_A 16 QAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEER 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555443 4455554 2234777888888777776666666544333
No 137
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.93 E-value=2.5e+02 Score=24.22 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhHHHHH
Q 041515 288 QLDEQVGAKKHNLVEL 303 (762)
Q Consensus 288 kL~~~~~~~~~~l~~L 303 (762)
.|+....+....+.++
T Consensus 16 ~Lq~~~~~LE~~l~e~ 31 (95)
T 3mov_A 16 QGQKESRACLERIQEL 31 (95)
T ss_dssp --CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 138
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.77 E-value=32 Score=37.62 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 337 LKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 337 ~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
++|++++.+++++.++++..+.+.++|..++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 24 EKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666555555555544433
No 139
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.66 E-value=3.6e+02 Score=24.10 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 041515 284 FYLEQLDEQVGAKKHNLVEL 303 (762)
Q Consensus 284 ~n~~kL~~~~~~~~~~l~~L 303 (762)
.-.++|+....+....|..+
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~ 25 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKT 25 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666554444444333
No 140
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.64 E-value=57 Score=35.80 Aligned_cols=21 Identities=5% Similarity=0.075 Sum_probs=15.5
Q ss_pred HhhHHHHHHHHHHHHHHHHhc
Q 041515 448 ATDRVRREIAEYEKKLAAVAS 468 (762)
Q Consensus 448 ~tg~~~rei~~le~qi~~~~~ 468 (762)
+-|-+-|-+.+|=..|+....
T Consensus 162 ~~Giipr~~~~lF~~i~~~~~ 182 (412)
T 3u06_A 162 SVGVIPRTVDLLFDSIRGYRN 182 (412)
T ss_dssp EECHHHHHHHHHHHHHHHHGG
T ss_pred CCccHHHHHHHHHHhhhhhcc
Confidence 347888888888888876544
No 141
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.62 E-value=1e+02 Score=33.79 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 336 LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 336 ~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
+.+.++++.++++++++++..++....+...+=++|-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~ 110 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPH 110 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4577888888888888888888777777777766654
No 142
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.48 E-value=3e+02 Score=23.10 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=29.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 289 LDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 289 L~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
|+..++...+|+..+ |.--..|.++++.++..+.....+ - ..++.+++.+.+-+..|-.....|...+.
T Consensus 4 l~~e~e~~~~klq~~----E~rN~~Le~~v~~le~~Le~s~~~----q---~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 4 MAAEREETQQKVQDL----ETRNAELEHQLRAMERSLEEARAE----R---ERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp ------CTTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555666666665 333444566666666554422111 1 12233444455555555444444444443
No 143
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=25.07 E-value=2.4e+02 Score=23.39 Aligned_cols=44 Identities=9% Similarity=0.257 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 041515 281 PTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEES 324 (762)
Q Consensus 281 ~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~ 324 (762)
+.|+.+++|+.-++...-|+..|-.+++.....|...+-.|+..
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888777777788888777777776666665555543
No 144
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.96 E-value=2.2e+02 Score=21.48 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 041515 282 TEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEE 323 (762)
Q Consensus 282 ~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~ 323 (762)
.|+-+++|+.-++...-|+..|-.+++.....|....-.|+.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777778888877777776666665555543
No 145
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.56 E-value=2.4e+02 Score=31.61 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 336 LLK-LREVELERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 336 ~~~-ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
+.+ .++++++++.+++++...++....+...+=++|-
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~ 146 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILH 146 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 345 6667777777777777666666665555555544
No 146
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.50 E-value=5.9e+02 Score=28.23 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=20.7
Q ss_pred HHHH--HHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 041515 378 SYIE--RIKEITKNSRKVDTDIERILKETRELQLESNSIQER 417 (762)
Q Consensus 378 ~Yt~--RI~Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~~~ 417 (762)
.|++ =|.-+-.|||--+.-++++-+.+-.|...++.+.++
T Consensus 151 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 151 LYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp THHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3555 333455556555555555555555555555555443
No 147
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.48 E-value=3.2e+02 Score=23.07 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhh
Q 041515 377 RSYIERIKEITKN 389 (762)
Q Consensus 377 ~~Yt~RI~Eiv~n 389 (762)
+..-.||-.++|.
T Consensus 65 ~~wq~Rl~~LLgk 77 (81)
T 2jee_A 65 NGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444555555444
No 148
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.41 E-value=3.4e+02 Score=23.41 Aligned_cols=70 Identities=24% Similarity=0.191 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhcccCcHHHHHHHHHH---HHHhcCC------------CCChhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 245 ESLMEAVTAKTSELCDPEEEYQLLKAA---AEMAFDD------------SHPTEFYLEQLDEQVGAKKHNLVELELQWDA 309 (762)
Q Consensus 245 ~~l~~~~~~~~~~~~e~e~~~~~~~~~---~e~l~d~------------~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~ 309 (762)
..+..++.....++..++.+++....+ ++.++++ ..+.++.+..|+..++.....+..|..+-+.
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~ 95 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKK 95 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555554 4445543 2344778888888777776666666554444
Q ss_pred hhHHH
Q 041515 310 LKESL 314 (762)
Q Consensus 310 ~r~pl 314 (762)
.+..+
T Consensus 96 l~~~l 100 (117)
T 2zqm_A 96 LNEKL 100 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 149
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.33 E-value=3.5e+02 Score=23.49 Aligned_cols=40 Identities=5% Similarity=0.127 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLE 322 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~ 322 (762)
+..++.=..-++..+..+...+.+|.+|...|-.--|+.+
T Consensus 33 d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ 72 (114)
T 2xzr_A 33 DGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQIN 72 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 4455555555666667777888888888777655544443
No 150
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=24.30 E-value=3.1e+02 Score=22.77 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHH-------HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 041515 288 QLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEES-------LYANELEAQAKLLKLREVELERQSVLSEIRKREDEY 360 (762)
Q Consensus 288 kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~-------~~~~~~e~~~k~~~ik~~~~~~~~~~~e~~~k~e~~ 360 (762)
||+++++-.++-+..|.+-|-.|.-.|-+--.+.+.- +.+..++-+- ...|-++.+=+.+++.-+++..+..
T Consensus 4 klnklvehikellqqlnknwhrhqgnlhdmnqqmeqlfqefqhfmqgnqddgkl-qnmihemqqfmnqvdnhlqsesdtv 82 (102)
T 3vjf_A 4 KLNKLVEHIKELLQQLNKNWHRHQGNLHDMNQQMEQLFQEFQHFMQGNQDDGKL-QNMIHEMQQFMNQVDNHLQSESDTV 82 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHhcCccchHH-HHHHHHHHHHHHHHHHHhhccchHH
Confidence 7888899999999999999999998886654444432 2233333221 1256777777777777777665543
No 151
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=24.24 E-value=4.4e+02 Score=24.57 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=13.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhHHHHH
Q 041515 334 AKLLKLREVEL-ERQSVLSEIRKREDEYS 361 (762)
Q Consensus 334 ~k~~~ik~~~~-~~~~~~~e~~~k~e~~~ 361 (762)
.||+.+++-|. .+..+.+.++.|+....
T Consensus 101 ~KME~~kEnReA~laal~erLkek~kha~ 129 (143)
T 3ryc_E 101 QKMESNKENREAHLAAMLERLQEKDKHAE 129 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555443 34455555555544333
No 152
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=24.19 E-value=5.6e+02 Score=25.79 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHH
Q 041515 285 YLEQLDEQVGAKKHNLVELELQWDALKESLEE 316 (762)
Q Consensus 285 n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~ 316 (762)
...||--++....+--..++...+++|..|..
T Consensus 67 IsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~ 98 (234)
T 3plt_A 67 VTDKLGVLIYELGELQDQFIDKYDQYRVTLKS 98 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666777777888877743
No 153
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.07 E-value=3.5e+02 Score=23.34 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
++++++.++..+..++..-+...+.|..++.
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555566655555
No 154
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=24.02 E-value=3.9e+02 Score=32.55 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=7.1
Q ss_pred hHHHHHHH-HHHHHHh
Q 041515 132 EEDLYKLI-RFLVERL 146 (762)
Q Consensus 132 ~~dlr~l~-~fLiekL 146 (762)
..++|+.. -.+.++|
T Consensus 151 ~~~L~~~a~~~i~~~l 166 (1057)
T 4dx5_A 151 QEDISDYVAANMKDAI 166 (1057)
T ss_dssp HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 34555544 3444444
No 155
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=23.73 E-value=3.2e+02 Score=26.03 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhh-----HHHHHHHHHHHhc
Q 041515 340 REVELERQSVLSEIRKR-----EDEYSKLSADLEK 369 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k-----~e~~~~L~~~~~~ 369 (762)
+++|.++..-.++++.. ++...++...++.
T Consensus 147 e~lr~~l~~~~e~lk~~l~Py~ee~k~kl~~~lee 181 (185)
T 3r2p_A 147 EEMRDRARAHVDALRTHLAPYSDELRQRLAARLEA 181 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444555555555544 4444444444443
No 156
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=22.78 E-value=1.5e+02 Score=29.84 Aligned_cols=132 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHH--------HHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHHHHHHhh-
Q 041515 287 EQLDEQVGAKKHNLVE--------LELQWDALKESLEEKKRSLEESLYANELEAQAKLL-KLREVELERQSVLSEIRKR- 356 (762)
Q Consensus 287 ~kL~~~~~~~~~~l~~--------L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~-~ik~~~~~~~~~~~e~~~k- 356 (762)
++|.-..+....++.. |...+|++|.-|.--..++++.+..+..+.+.++. -.++++.+.+.-.++++.+
T Consensus 62 ~~l~p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L 141 (243)
T 2a01_A 62 EQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKL 141 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred ----HHHHHHHHHHHhcCCCccChHHHHHHHHHHHhhhhhhHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 041515 357 ----EDEYSKLSADLEKQPKVASRRSYIERIKEITKNSRKVDTDIERILK-ETRELQLESNSIQERLHRTYA 423 (762)
Q Consensus 357 ----~e~~~~L~~~~~~~~k~~~R~~Yt~RI~Eiv~nirKQ~~eI~Kil~-dtr~lqkein~~~~~l~Rtf~ 423 (762)
+++..++...++ .-|..-+--.=|+-..+...=+++...+. ...++|.+++..-+.|....+
T Consensus 142 ~p~~eelr~kl~~~ve-----elk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~ 208 (243)
T 2a01_A 142 SPLGEEMRDRARAHVD-----ALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAK 208 (243)
T ss_dssp CSSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhH
No 157
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=22.16 E-value=5.4e+02 Score=26.00 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 041515 338 KLREVELERQSVLSEIRKREDEYSKL 363 (762)
Q Consensus 338 ~ik~~~~~~~~~~~e~~~k~e~~~~L 363 (762)
....+..+.+.+..+-+.....|.+-
T Consensus 139 ~~~~L~~~f~~~~~~Fq~~Q~~y~e~ 164 (279)
T 2xhe_B 139 QHSSLSRKFVKVMTRYNDVQAENKRR 164 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655555443
No 158
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.85 E-value=90 Score=23.12 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=25.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccccchhh
Q 041515 444 EKILATDRVRREIAEYEKKLAAVASRSLNVDK 475 (762)
Q Consensus 444 ~~i~~tg~~~rei~~le~qi~~~~~k~~nle~ 475 (762)
+.|+..+++-|||.--|.||.....|...||.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999988776665554
No 159
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=21.72 E-value=85 Score=23.30 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=14.7
Q ss_pred hcCCCccChHHHHHHHH
Q 041515 368 EKQPKVASRRSYIERIK 384 (762)
Q Consensus 368 ~~~~k~~~R~~Yt~RI~ 384 (762)
.+.|-+.+.++|++||.
T Consensus 30 srvpantsmsayirrii 46 (53)
T 2kke_A 30 SRVPANTSMSAYIRRII 46 (53)
T ss_dssp TTCCSSSCHHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHH
Confidence 46799999999999984
No 160
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=21.69 E-value=4.7e+02 Score=23.97 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 041515 260 DPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEKKRSLEESLYANELEAQAKLLKL 339 (762)
Q Consensus 260 e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~~~~~e~~~k~~~i 339 (762)
++++.-..+.-...||.. ...-+.+|+..-..-...+..|..+.+.....+..--..|+..-..+...+- .+.++
T Consensus 26 eleEnqeEL~iVgkML~E----EqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSl-DiRKL 100 (167)
T 4gkw_A 26 QLEENQEELEIVGNMLRE----EQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSL-DMRKL 100 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHHHHHHH----HHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhh-hHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 340 REVELERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 340 k~~~~~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
++++..+|+-+.....-.+.+--|+++++
T Consensus 101 rELEADLKEKDsMVe~LT~TiG~LrKELE 129 (167)
T 4gkw_A 101 GELEADLKEKDSMVESLTETIGILRKELE 129 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHHHHHHHHHHHHHHH
No 161
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=21.58 E-value=1e+03 Score=27.82 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.0
Q ss_pred HHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515 295 AKKHNLVELELQWDALKESLEEKKRSLEESLY 326 (762)
Q Consensus 295 ~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~ 326 (762)
...+++.+|..+|+..+....++.+.|.+.+.
T Consensus 447 ~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~ 478 (863)
T 1sjj_A 447 SVNARCQKICDQWDNLGALTQKRREALERTEK 478 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999988888888887643
No 162
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=21.52 E-value=6.5e+02 Score=30.55 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=12.6
Q ss_pred ChHHHHHHHHH-HHHHhcCCC
Q 041515 131 SEEDLYKLIRF-LVERLSELP 150 (762)
Q Consensus 131 ~~~dlr~l~~f-LiekLp~~p 150 (762)
+..++|++--. +..+|-+.|
T Consensus 159 ~~~~L~~~a~~~~~~~l~~~p 179 (1054)
T 3ne5_A 159 DLADLRSLQDWFLKYELKTIP 179 (1054)
T ss_dssp CHHHHHHHHHHTHHHHHTTST
T ss_pred CHHHHHHHHHHHHHHHHhcCC
Confidence 66788888775 444673334
No 163
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.37 E-value=8.9e+02 Score=27.09 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=14.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccc
Q 041515 442 VSEKILATDRVRREIAEYEKKLAAVASRS 470 (762)
Q Consensus 442 l~~~i~~tg~~~rei~~le~qi~~~~~k~ 470 (762)
|.-.++.-=.-..+-+|-|.+++.|..|.
T Consensus 425 ls~~me~Rkq~e~k~k~ae~kl~~e~~kp 453 (551)
T 2b5u_A 425 LSSAMESRKKKEDKKRSAENNLNDEKNKP 453 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhhhhcccchhhhhhhhhhccchhhhCc
Confidence 33333333334444556666666665544
No 164
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=20.79 E-value=6.5e+02 Score=25.28 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHhhhhhcccCcHHHHHHHHHHHHHhcCCCCChhHHHHHHHH--HHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 041515 249 EAVTAKTSELCDPEEEYQLLKAAAEMAFDDSHPTEFYLEQLDE--QVGAKKHNLVELELQWDALKESLEEKKRSLEESLY 326 (762)
Q Consensus 249 ~~~~~~~~~~~e~e~~~~~~~~~~e~l~d~~~~~~~n~~kL~~--~~~~~~~~l~~L~~qWe~~r~pl~~~~~~l~~~~~ 326 (762)
..+.......+..+.++...+..++.+.+ .-..+..... ......+++.+|...|+.......+....|++...
T Consensus 145 ~~v~~l~~~h~~~~~~l~~~~~~v~~l~~----~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~~ 220 (323)
T 3edv_A 145 NTVETLQRMHTTFEHDIQALGTQVRQLQE----DAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGD 220 (323)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHH----HHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hchHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccChHHHHHHHHH
Q 041515 327 ANELEAQAK---------------------LLKLREVELERQSVLSEIRKREDEYSKLSADLEKQPKVASRRSYIERIKE 385 (762)
Q Consensus 327 ~~~~e~~~k---------------------~~~ik~~~~~~~~~~~e~~~k~e~~~~L~~~~~~~~k~~~R~~Yt~RI~E 385 (762)
-.......+ +..++.+-.+-+.+..||..+++.+..+...=+.+-......+ .-|.+
T Consensus 221 ~~~F~~~~~~l~~Wl~~~~~~l~~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~--~~i~~ 298 (323)
T 3edv_A 221 KFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYAS--EEIKE 298 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch--HHHHH
Q ss_pred HHhhhhhhHHhHHHHHHHHHHH
Q 041515 386 ITKNSRKVDTDIERILKETREL 407 (762)
Q Consensus 386 iv~nirKQ~~eI~Kil~dtr~l 407 (762)
-+..+...-+++.....+.+..
T Consensus 299 ~l~~L~~~w~~l~~~w~~R~~~ 320 (323)
T 3edv_A 299 KLLQLTEKRKEMIDKWEDRWEW 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 165
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=20.63 E-value=6.7e+02 Score=25.38 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHh
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLE 368 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~ 368 (762)
.......++.+-...|.++-.+++
T Consensus 151 ~~~~~~~~l~KaK~~Y~~~c~e~e 174 (312)
T 3abh_A 151 PWAKKLKEVEAAKKAHHAACKEEK 174 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444
No 166
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.50 E-value=2.9e+02 Score=28.45 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCCC
Q 041515 345 ERQSVLSEIRKREDEYSKLSADLEKQPK 372 (762)
Q Consensus 345 ~~~~~~~e~~~k~e~~~~L~~~~~~~~k 372 (762)
+.+....+++..+...++++..++....
T Consensus 122 ~~~~~~a~l~~~~a~l~~a~a~l~~a~~ 149 (341)
T 3fpp_A 122 EMAVKQAQIGTIDAQIKRNQASLDTAKT 149 (341)
T ss_dssp HHHHTHHHHHHHHHHHHHTHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444555555554433
No 167
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=20.27 E-value=6.3e+02 Score=24.87 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=43.9
Q ss_pred HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhcCccch-HHHHHHHHH
Q 041515 385 EITKNSRKVDTDIERILKETRELQLESNSIQ----------ERLHRTYAVVDDMIFREAKKDQS-FEQVSEKIL 447 (762)
Q Consensus 385 Eiv~nirKQ~~eI~Kil~dtr~lqkein~~~----------~~l~Rtf~v~delif~~akkd~~-~~~l~~~i~ 447 (762)
+-+..+.+.=++|.+|+.-++.+=.+.|-|. |---|-|+|+=+=|-+-|.+... ..+|-+.|.
T Consensus 56 ~~~~~l~~~s~~I~~i~~~I~~IA~QTNLLALNAaIEAARAGE~GrGFAVVA~EVRkLA~~t~~at~~I~~~i~ 129 (227)
T 1qu7_A 56 QTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIE 129 (227)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566678888888888888888653 55689999999999998887543 344444443
No 168
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.26 E-value=3.7e+02 Score=22.20 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=7.1
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 041515 289 LDEQVGAKKHNLVELELQ 306 (762)
Q Consensus 289 L~~~~~~~~~~l~~L~~q 306 (762)
|+...+....+...+..+
T Consensus 11 lk~e~d~a~~~~~~~e~~ 28 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEAD 28 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 169
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=20.09 E-value=5.5e+02 Score=24.12 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=31.7
Q ss_pred hcccCcHHHHHHHHHHH-HHhcCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 041515 256 SELCDPEEEYQLLKAAA-EMAFDDSHPTEFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK 317 (762)
Q Consensus 256 ~~~~e~e~~~~~~~~~~-e~l~d~~~~~~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~ 317 (762)
.++...+..+......- +++.+. +......++..++...++-..|...|+..+.-|.+-
T Consensus 47 ~ei~~~~~~~~~~~~~g~~L~~~~---~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~ 106 (214)
T 1s35_A 47 DEIDGHQDSYQRVKESGEKVIQGQ---TDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQC 106 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 333331 122456667666666666677777777777766543
No 170
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=20.07 E-value=5.3e+02 Score=23.96 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHH
Q 041515 283 EFYLEQLDEQVGAKKHNLVELELQWDALKESLEEK 317 (762)
Q Consensus 283 ~~n~~kL~~~~~~~~~~l~~L~~qWe~~r~pl~~~ 317 (762)
+....-|+..-.....+|..|..|+...+.-..+-
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeea 71 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 71 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566667777777776666555443
No 171
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=20.05 E-value=7.5e+02 Score=25.71 Aligned_cols=20 Identities=0% Similarity=0.024 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHhhHHHHHH
Q 041515 298 HNLVELELQWDALKESLEEK 317 (762)
Q Consensus 298 ~~l~~L~~qWe~~r~pl~~~ 317 (762)
..+.++..+-+.|+..+.+.
T Consensus 114 ~dlEelR~~L~Py~~el~~~ 133 (307)
T 2l7b_A 114 ADMEDVCGRLVQYRGEVQAM 133 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555443
Done!