Citrus Sinensis ID: 041516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MEGGGCCSTSTSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAK
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHccccccccccccEEEEcccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccHHccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
megggccstststkspekrkprqqRQHQqqqekpykgirmrkwGKWVAEIRepnkrsriwlgsyTTPIAAARAYDTAVFylrgpsarlnfpelifqeddlrDVSAASIRKKATEVGAK
Flexible Loop (DISEMBL)
megggccstststkspekrkprqqrqhqqqqekpykgirmrkwGKWVAEirepnkrsriwlgSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRkkatevgak
Low Complexity Region (SEG)
MEgggccstststKSpekrkprqqrqhqqqqekpYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAK
Disordered region (IsUnstruct)
************************************GIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQED********************
Disordered Region (DISOPRED)
*************************************IRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL******************A******
Disordered Region (DISEMBL)
***********************************KGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIR*********
Disordered Region (DISPRO)
******************************QEKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDD***VS*ASI*KKATEVG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGGCCSTSTSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q9FH94	184	Ethylene-responsive trans	yes	no	0.855	0.548	0.647	1e-36
Q8LC30	153	Ethylene-responsive trans	no	no	0.906	0.699	0.637	7e-35
Q9SNE1	153	Ethylene-responsive trans	no	no	0.762	0.588	0.758	2e-34
Q9SW63	196	Ethylene-responsive trans	no	no	0.762	0.459	0.71	5e-34
Q8W3M3	150	Ethylene-responsive trans	no	no	0.805	0.633	0.7	2e-33
O22174	176	Ethylene-responsive trans	no	no	0.771	0.517	0.742	2e-33
Q9C9I2	183	Ethylene-responsive trans	no	no	0.677	0.437	0.575	6e-20
Q9SFE4	230	Ethylene-responsive trans	no	no	0.483	0.247	0.684	2e-19
Q9SUK8	179	Ethylene-responsive trans	no	no	0.525	0.346	0.612	3e-19
Q9LYD3	236	Dehydration-responsive el	no	no	0.728	0.364	0.505	5e-19

>sp|Q9FH94|ERF10_ARATH Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 92/122 (75%), Gaps = 21/122 (17%)

Query: 1   MEGGGCCSTSTSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIW 60
           MEGGG    +     P  RK          +++PYKGIRMRKWGKWVAEIREPNKRSR+W
Sbjct: 1   MEGGGVADVAV----PGTRK----------RDRPYKGIRMRKWGKWVAEIREPNKRSRLW 46

Query: 61  LGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI----FQEDDLRDVSAASIRKKATEVG 116
           LGSY+TP AAARAYDTAVFYLRGP+ARLNFPEL+    F ++D+   SAA+IRKKATEVG
Sbjct: 47  LGSYSTPEAAARAYDTAVFYLRGPTARLNFPELLPGEKFSDEDM---SAATIRKKATEVG 103

Query: 117 AK 118
           A+
Sbjct: 104 AQ 105

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC30|RAP21_ARATH Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1

 Score =  145 bits (366), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 86/113 (76%), Gaps = 6/113 (5%)

Query: 12  STKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAA 71
           ST    ++ P+++  +     KPY+GIR RKWGKWVAEIREPNKRSR+WLGSYTT IAAA
Sbjct: 8   STMRKRRQPPQEEVPNHVATRKPYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAA 67

Query: 72  RAYDTAVFYLRGPSARLNFPELIFQEDD------LRDVSAASIRKKATEVGAK 118
           RAYD AVFYLRGPSARLNFP+L+ QE+D        D+ AA IR+KA EVGA+
Sbjct: 68  RAYDVAVFYLRGPSARLNFPDLLLQEEDHLSAATTADMPAALIREKAAEVGAR 120

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNE1|ERF11_ARATH Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 81/91 (89%), Gaps = 1/91 (1%)

Query: 28  QQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSAR 87
           + ++E+P+KGIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+A 
Sbjct: 14  KMKRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTAT 73

Query: 88  LNFPELIFQEDDLRDVSAASIRKKATEVGAK 118
           LNFPEL+       D+SAA+IRKKATEVGA+
Sbjct: 74  LNFPELL-PCTSAEDMSAATIRKKATEVGAQ 103

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW63|RA210_ARATH Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 81/100 (81%), Gaps = 10/100 (10%)

Query: 29  QQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARL 88
           ++++KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSY+TP AAARAYDTAVFYLRGPSARL
Sbjct: 24  RKRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARL 83

Query: 89  NFPELI----------FQEDDLRDVSAASIRKKATEVGAK 118
           NFPEL+             +   D+SAA IR+KA EVGA+
Sbjct: 84  NFPELLAGVTVTGGGGGGVNGGGDMSAAYIRRKAAEVGAQ 123

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3M3|RAP29_ARATH Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 77/100 (77%), Gaps = 5/100 (5%)

Query: 24  QRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRG 83
           +R      EK YKGIRMRKWGKWVAEIREPNKRSRIWLGSY T +AAARAYDTAVFYLRG
Sbjct: 25  KRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRG 84

Query: 84  PSARLNFPELIFQE-----DDLRDVSAASIRKKATEVGAK 118
           PSARLNFPE +F++         D+S   IRKKA EVGA+
Sbjct: 85  PSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGAR 124

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O22174|ERF08_ARATH Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 79/97 (81%), Gaps = 6/97 (6%)

Query: 28  QQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSAR 87
           +++  KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSY TP AAARAYDTAVFYLRGPSAR
Sbjct: 21  RKRDLKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSAR 80

Query: 88  LNFPELI----FQEDDLR--DVSAASIRKKATEVGAK 118
           LNFPEL+          R  D+SAA IR+KA EVGA+
Sbjct: 81  LNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQ 117

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9I2|ERF21_ARATH Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 54/80 (67%)

Query: 35  YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
           Y+G+R RKWGKWV+EIREP  ++RIWLGS+ TP  AA AYD A F+ RG  ARLNFPEL 
Sbjct: 24  YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELA 83

Query: 95  FQEDDLRDVSAASIRKKATE 114
                  D S+ SIR    E
Sbjct: 84  SSLPRPADSSSDSIRMAVHE 103

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFE4|ERF12_ARATH Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 47/57 (82%)

Query: 35  YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 91
           YKG+RMR WG WV+EIR PN+++RIWLGSY+T  AAARAYD A+  L+GP A LNFP
Sbjct: 50  YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFP 106

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 51/62 (82%)

Query: 35  YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
           ++G+RMR+WGKWV+EIREP K+SRIWLG+++TP  AARA+D A   ++G SA LNFPEL 
Sbjct: 40  FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELA 99

Query: 95  FQ 96
           + 
Sbjct: 100 YH 101

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 8   STSTSTKSPEKRKPRQQRQHQQQQEKP-YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTT 66
           S S S KS  ++  ++ ++ +   + P Y+G+RMR WGKWV+EIREP K+SRIWLG++ T
Sbjct: 23  SDSVSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPT 82

Query: 67  PIAAARAYDTAVFYLRGPSARLNFPEL 93
           P  AARA+D A   ++G +A LNFPEL
Sbjct: 83  PEMAARAHDVAALSIKGTAAILNFPEL 109

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
33324520	153	dehydration responsive element binding p	0.957	0.738	0.813	5e-47
224137608	155	AP2/ERF domain-containing transcription	0.974	0.741	0.820	6e-47
449447039	149	PREDICTED: ethylene-responsive transcrip	0.957	0.758	0.745	7e-44
224063489	158	AP2/ERF domain-containing transcription	0.805	0.601	0.876	3e-42
351738963	138	dehydration-responsive element binding p	0.932	0.797	0.719	4e-42
292668961	160	AP2 domain class transcription factor [M	0.983	0.725	0.75	4e-42
351738967	138	dehydration-responsive element binding p	0.932	0.797	0.719	8e-42
351738969	138	dehydration-responsive element binding p	0.932	0.797	0.710	8e-42
351738965	138	dehydration-responsive element binding p	0.932	0.797	0.719	9e-42
356510467	160	PREDICTED: ethylene-responsive transcrip	0.932	0.687	0.719	1e-41

>gi|33324520|gb|AAQ08000.1| dehydration responsive element binding protein [Gossypium hirsutum] gi|37727988|gb|AAO43165.1| DRE binding protein 1 [Gossypium hirsutum]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 103/118 (87%), Gaps = 5/118 (4%)

Query: 1   MEGGGCCSTSTSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIW 60
           ME G CC TS S  S EKRK        QQ+EKP++GIRMRKWGKWVAEIREPNKRSRIW
Sbjct: 1   MELGDCCLTS-SPASGEKRK----LHRTQQKEKPFRGIRMRKWGKWVAEIREPNKRSRIW 55

Query: 61  LGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAK 118
           LGSYTTP+AAARAYDTAVFYLRGPSARLNFP+LIFQED+LRD+SAASIRKKATEVGAK
Sbjct: 56  LGSYTTPVAAARAYDTAVFYLRGPSARLNFPDLIFQEDELRDISAASIRKKATEVGAK 113

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137608|ref|XP_002327168.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372120|gb|ABQ62991.1| RAP2.4-like protein [Populus trichocarpa] gi|222835483|gb|EEE73918.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 96/117 (82%), Positives = 106/117 (90%), Gaps = 2/117 (1%)

Query: 4   GGCCSTSTSTKSPEKRKPRQQRQH--QQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWL 61
           GGCC++STST S       ++R+H  QQ QEKPY+GIRMRKWGKWVAEIREPNKRSRIWL
Sbjct: 3   GGCCTSSTSTPSSTSTATTEKRKHSRQQNQEKPYRGIRMRKWGKWVAEIREPNKRSRIWL 62

Query: 62  GSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAK 118
           GSY+TPIAAARAYDTAVFYLRGPSARLNFP+LI+QED+LRDVSAASIRKKATEVGAK
Sbjct: 63  GSYSTPIAAARAYDTAVFYLRGPSARLNFPDLIYQEDELRDVSAASIRKKATEVGAK 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447039|ref|XP_004141277.1| PREDICTED: ethylene-responsive transcription factor ERF011-like [Cucumis sativus]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 99/118 (83%), Gaps = 5/118 (4%)

Query: 1   MEGGGCCSTSTSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIW 60
           MEG  C   S+S K    RK R  + H QQQ KPY+GIRMRKWGKWVAEIREPNKRSRIW
Sbjct: 1   MEGEVCSVNSSSPK----RKQRHDQNHLQQQ-KPYRGIRMRKWGKWVAEIREPNKRSRIW 55

Query: 61  LGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAK 118
           LGSYTTP+AAARAYDTAVFYLRGP+ARLNFP+L+F+ D L D+SAASIRK+ATEVGA+
Sbjct: 56  LGSYTTPVAAARAYDTAVFYLRGPTARLNFPDLMFETDQLHDMSAASIRKRATEVGAR 113

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063489|ref|XP_002301169.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372122|gb|ABQ62992.1| RAP2-like protein [Populus trichocarpa] gi|222842895|gb|EEE80442.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/97 (87%), Positives = 91/97 (93%), Gaps = 2/97 (2%)

Query: 24  QRQH--QQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYL 81
           +R+H  QQ QEKPY+GIRMRKWGKWVAEIREPNKRSRIWLGSY+TPIAAARAYDTAVFYL
Sbjct: 23  KRKHGRQQNQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYL 82

Query: 82  RGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAK 118
           RGPS RLNFP+LI QED+L DVSAASIRKKATEVGAK
Sbjct: 83  RGPSVRLNFPDLIHQEDELCDVSAASIRKKATEVGAK 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351738963|gb|AEQ61578.1| dehydration-responsive element binding protein 2 [Glycine max]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 100/121 (82%), Gaps = 11/121 (9%)

Query: 4   GGCCST-STSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLG 62
           G CCS+ ST T+  +KRK     Q  QQQEKPY+GIRMRKWGKWVAEIREPNKRSRIWLG
Sbjct: 7   GDCCSSNSTITRKSDKRK-----QQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLG 61

Query: 63  SYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLR-----DVSAASIRKKATEVGA 117
           SY TP+AAARAYDTAVF+LRGPSARLNFPEL+ Q+DD+      ++SA SIRKKAT+VGA
Sbjct: 62  SYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGNMSADSIRKKATQVGA 121

Query: 118 K 118
           +
Sbjct: 122 R 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668961|gb|ADE41135.1| AP2 domain class transcription factor [Malus x domestica] gi|325534107|gb|ADZ28108.1| ethylene response factor 5 [Malus x domestica] gi|392856155|gb|AFM84627.1| dehydration-responsive element binding protein [Malus sieversii]

 Score =  174 bits (442), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 102/120 (85%), Gaps = 4/120 (3%)

Query: 1   MEGGGCCSTSTSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIW 60
           MEG  CCS+S+S+ +    + R+   H+Q  EK Y+GIRMRKWGKWVAEIREPNKRSRIW
Sbjct: 1   MEGDYCCSSSSSSSTSTSMEKRKHPDHRQ--EKQYRGIRMRKWGKWVAEIREPNKRSRIW 58

Query: 61  LGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQED--DLRDVSAASIRKKATEVGAK 118
           LGSYTTP+AAARAYDTAVFYLRGPSARLNFPEL+FQ+D   L D+SAASIRKKATEVGAK
Sbjct: 59  LGSYTTPMAAARAYDTAVFYLRGPSARLNFPELVFQDDGQQLHDMSAASIRKKATEVGAK 118

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351738967|gb|AEQ61580.1| dehydration-responsive element binding protein 2 [Glycine max]

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 99/121 (81%), Gaps = 11/121 (9%)

Query: 4   GGCCST-STSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLG 62
           G CCS+ ST T+  EKRK     Q  QQQEKPY+GIRMRKWGKWVAEIREPNK SRIWLG
Sbjct: 7   GDCCSSKSTITRKSEKRK-----QQHQQQEKPYRGIRMRKWGKWVAEIREPNKSSRIWLG 61

Query: 63  SYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLR-----DVSAASIRKKATEVGA 117
           SY TP+AAARAYDTAVF+LRGPSARLNFPEL+ Q+DD+      ++SA SIRKKAT+VGA
Sbjct: 62  SYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGNMSADSIRKKATQVGA 121

Query: 118 K 118
           +
Sbjct: 122 R 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351738969|gb|AEQ61581.1| dehydration-responsive element binding protein 2 [Glycine max] gi|351738971|gb|AEQ61582.1| dehydration-responsive element binding protein 2 [Glycine max]

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 100/121 (82%), Gaps = 11/121 (9%)

Query: 4   GGCCST-STSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLG 62
           G CCS+ ST T+  +KRK     Q  QQQEKPY+GIRMRKWGKWVAEIREPNKRSRIWLG
Sbjct: 7   GDCCSSNSTITRKSDKRK-----QQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLG 61

Query: 63  SYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLR-----DVSAASIRKKATEVGA 117
           SY TP+AAARAYDTAVF+LRGPSARLNFPEL+ Q+DD+      ++SA SIR+KAT+VGA
Sbjct: 62  SYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGNMSADSIRQKATQVGA 121

Query: 118 K 118
           +
Sbjct: 122 R 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351738965|gb|AEQ61579.1| dehydration-responsive element binding protein 2 [Glycine max] gi|351738973|gb|AEQ61583.1| dehydration-responsive element binding protein 2 [Glycine max]

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 99/121 (81%), Gaps = 11/121 (9%)

Query: 4   GGCCST-STSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLG 62
           G CCS+ ST T+  EKRK     Q  QQQEKPY+GIRMRKWGKWVAEIREPNKRSRIWLG
Sbjct: 7   GDCCSSNSTITRKSEKRK-----QQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLG 61

Query: 63  SYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRD-----VSAASIRKKATEVGA 117
           SY TP+AAARAYDTAVF+LRGPSARLNFPEL+ Q+DD+       +SA SIR+KAT+VGA
Sbjct: 62  SYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGKMSADSIRQKATQVGA 121

Query: 118 K 118
           +
Sbjct: 122 R 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510467|ref|XP_003523959.1| PREDICTED: ethylene-responsive transcription factor RAP2-1-like [Glycine max]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 100/121 (82%), Gaps = 11/121 (9%)

Query: 4   GGCCST-STSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRKWGKWVAEIREPNKRSRIWLG 62
           G CCS+ ST T+  +KRK     Q  QQQEKPY+GIRMRKWGKWVAEIREPNKRSRIWLG
Sbjct: 7   GDCCSSNSTITRKSDKRK-----QQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLG 61

Query: 63  SYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLR-----DVSAASIRKKATEVGA 117
           SY TP+AAARAYDTAVF+LRGPSARLNFPEL+ Q+DD+      ++SA SIRKKAT+VGA
Sbjct: 62  SYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGNMSADSIRKKATQVGA 121

Query: 118 K 118
           +
Sbjct: 122 R 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2155498	184	DEAR2 "DREB and EAR motif prot	0.711	0.456	0.823	1.1e-32
TAIR|locus:2074765	153	CEJ1 "cooperatively regulated	0.703	0.542	0.797	1.6e-31
TAIR|locus:2825842	153	RAP2.1 "related to AP2 1" [Ara	0.711	0.549	0.744	4.2e-31
TAIR|locus:1005716457	150	RAP2.9 "related to AP2 9" [Ara	0.711	0.56	0.764	8.8e-31
TAIR|locus:2058641	176	DEAR3 "DREB and EAR motif prot	0.711	0.477	0.777	1.4e-30
TAIR|locus:2115005	196	RAP2.10 "related to AP2 10" [A	0.711	0.428	0.734	1.6e-29
TAIR|locus:2825329	183	AT1G71450 [Arabidopsis thalian	0.677	0.437	0.575	7.2e-20
TAIR|locus:2204730	244	AT1G77640 [Arabidopsis thalian	0.677	0.327	0.523	5.1e-19
TAIR|locus:2202200	185	AT1G19210 [Arabidopsis thalian	0.661	0.421	0.564	6.5e-19
TAIR|locus:2194819	211	AT1G44830 [Arabidopsis thalian	0.703	0.393	0.527	8.3e-19

TAIR|locus:2155498 DEAR2 "DREB and EAR motif protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 70/85 (82%), Positives = 77/85 (90%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
             YKGIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+ARLNFPEL+
Sbjct:    21 YKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELL 80

Query:    95 FQED-DLRDVSAASIRKKATEVGAK 118
               E     D+SAA+IRKKATEVGA+
Sbjct:    81 PGEKFSDEDMSAATIRKKATEVGAQ 105

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2074765 CEJ1 "cooperatively regulated by ethylene and jasmonate 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 67/84 (79%), Positives = 75/84 (89%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
             +KGIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAYDTAVFYLRGP+A LNFPEL+
Sbjct:    21 FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELL 80

Query:    95 FQEDDLRDVSAASIRKKATEVGAK 118
                    D+SAA+IRKKATEVGA+
Sbjct:    81 -PCTSAEDMSAATIRKKATEVGAQ 103

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0010941 "regulation of cell death" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2825842 RAP2.1 "related to AP2 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 67/90 (74%), Positives = 75/90 (83%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
             Y+GIR RKWGKWVAEIREPNKRSR+WLGSYTT IAAARAYD AVFYLRGPSARLNFP+L+
Sbjct:    31 YRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLL 90

Query:    95 FQEDD------LRDVSAASIRKKATEVGAK 118
              QE+D        D+ AA IR+KA EVGA+
Sbjct:    91 LQEEDHLSAATTADMPAALIREKAAEVGAR 120

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:1005716457 RAP2.9 "related to AP2 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 68/89 (76%), Positives = 75/89 (84%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
             YKGIRMRKWGKWVAEIREPNKRSRIWLGSY T +AAARAYDTAVFYLRGPSARLNFPE +
Sbjct:    36 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEV 95

Query:    95 FQE----DDLR-DVSAASIRKKATEVGAK 118
             F++    + L  D+S   IRKKA EVGA+
Sbjct:    96 FKDGNGGEGLGGDMSPTLIRKKAAEVGAR 124

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2058641 DEAR3 "DREB and EAR motif protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 70/90 (77%), Positives = 74/90 (82%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
             YKGIRMRKWGKWVAEIREPNKRSRIWLGSY TP AAARAYDTAVFYLRGPSARLNFPEL+
Sbjct:    28 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELL 87

Query:    95 ----FQEDDLR--DVSAASIRKKATEVGAK 118
                       R  D+SAA IR+KA EVGA+
Sbjct:    88 AGLTVSNGGGRGGDLSAAYIRRKAAEVGAQ 117

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2115005 RAP2.10 "related to AP2 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 69/94 (73%), Positives = 75/94 (79%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
             YKGIRMRKWGKWVAEIREPNKRSRIWLGSY+TP AAARAYDTAVFYLRGPSARLNFPEL+
Sbjct:    30 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELL 89

Query:    95 FQE----------DDLRDVSAASIRKKATEVGAK 118
                          +   D+SAA IR+KA EVGA+
Sbjct:    90 AGVTVTGGGGGGVNGGGDMSAAYIRRKAAEVGAQ 123

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2825329 AT1G71450 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 46/80 (57%), Positives = 54/80 (67%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
             Y+G+R RKWGKWV+EIREP  ++RIWLGS+ TP  AA AYD A F+ RG  ARLNFPEL 
Sbjct:    24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELA 83

Query:    95 FQEDDLRDVSAASIRKKATE 114
                    D S+ SIR    E
Sbjct:    84 SSLPRPADSSSDSIRMAVHE 103

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2204730 AT1G77640 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 45/86 (52%), Positives = 58/86 (67%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL- 93
             YKG+RMR WG WV EIR PN+++RIWLGSY+T  AAARAYD A+  L+GP A LNFP + 
Sbjct:    43 YKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNIT 102

Query:    94 -----IFQEDDLRDVSAASIRKKATE 114
                  +   D+   +S  SI+K A +
Sbjct:   103 TTSPFLMNIDEKTLLSPKSIQKVAAQ 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2202200 AT1G19210 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 44/78 (56%), Positives = 56/78 (71%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 94
             YKG+R RKWGKWV+EIR PN R RIWLGSY TP  AARA+D A++ LRG +A+ NFP+  
Sbjct:    12 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNP 71

Query:    95 FQEDDLRDVSAASIRKKA 112
                   R++S + IR+ A
Sbjct:    72 PVISGGRNLSRSEIREAA 89

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2194819 AT1G44830 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 48/91 (52%), Positives = 61/91 (67%)

Query:    35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSAR-LNFPEL 93
             YKG+RMR WG WV+EIR PN+++RIWLGSY+T  AAARAYD A+  L+G SA  LNFPE+
Sbjct:    35 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPEI 94

Query:    94 -------IFQEDDLRDVSAASIRKKATEVGA 117
                    I   D+  D+S  SI++ A    A
Sbjct:    95 STSLYHIINNGDNNNDMSPKSIQRVAAAAAA 125

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:1900030 "regulation of pectin biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-30
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-25
pfam00847	53	pfam00847, AP2, AP2 domain	1e-08

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  102 bits (256), Expect = 3e-30
 Identities = 37/59 (62%), Positives = 44/59 (74%)

Query: 35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 93
          Y+G+R R WGKWVAEIR+P+K  R+WLG++ T   AARAYD A F  RG SARLNFP  
Sbjct: 2  YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 90.0 bits (224), Expect = 2e-25
 Identities = 36/59 (61%), Positives = 43/59 (72%)

Query: 35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 93
          Y+G+R R WGKWVAEIR+P+   RIWLG++ T   AARAYD A   LRG SA LNFP+ 
Sbjct: 3  YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 46.9 bits (112), Expect = 1e-08
 Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 35 YKGIRMRK-WGKWVAEIREPNKRS--RIWLGSYTTPIAAARAYDTAVFYLRG 83
          YKG+R  K WG+WVAEIR+P ++   R  LG++ T   AARA   A   LRG
Sbjct: 3  YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.87
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.86
PHA00280	121	putative NHN endonuclease	99.6
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.3
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	87.87

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.87  E-value=2.6e-22  Score=126.14  Aligned_cols=61  Identities=59%  Similarity=1.096  Sum_probs=57.2

Q ss_pred             CCeeeeEEcCCCcEEEEEecCCCCeeeeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 041516           33 KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL   93 (118)
Q Consensus        33 S~yrGV~~~~~gkw~A~I~~~~~~k~~~LG~f~t~eeAA~AYd~aa~~~~G~~a~~Nfp~~   93 (118)
                      |+|+||+++++|+|+|+|+++..+++++||+|+|+|||+.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899999988899999999975578899999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.86  E-value=1.5e-21  Score=124.06  Aligned_cols=63  Identities=59%  Similarity=1.162  Sum_probs=59.5

Q ss_pred             CeeeeEEcCCCcEEEEEecCCCCeeeeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCccCC
Q 041516           34 PYKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQ   96 (118)
Q Consensus        34 ~yrGV~~~~~gkw~A~I~~~~~~k~~~LG~f~t~eeAA~AYd~aa~~~~G~~a~~Nfp~~~~~   96 (118)
                      +|+||+++++|+|+|+|+++..+++++||+|+|+|||+.|||.++++++|.++.+|||.+.|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            489999988899999999977778899999999999999999999999999999999998886

>PHA00280 putative NHN endonuclease

Probab=99.60  E-value=2.2e-15  Score=107.27  Aligned_cols=71  Identities=17%  Similarity=0.137  Sum_probs=57.0

Q ss_pred             CCCCCCCCCCcccccccCCCCCCCeeeeEEcC-CCcEEEEEecCCCCeeeeccCCCCHHHHHHHHHHHHHhhcCCCCC
Q 041516           11 TSTKSPEKRKPRQQRQHQQQQEKPYKGIRMRK-WGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSAR   87 (118)
Q Consensus        11 ~~~~~~~~~~~r~~~~~~~~~~S~yrGV~~~~-~gkw~A~I~~~~~~k~~~LG~f~t~eeAA~AYd~aa~~~~G~~a~   87 (118)
                      .-++...+...++   ....|+|||+||+|.+ .|||+|+|.+  ++++++||.|+++|+|+.||+ ++.+|||+++.
T Consensus        48 r~~T~~eN~~N~~---~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         48 RLALPKENSWNMK---TPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hhcCHHHHhcccC---CCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            3344444444432   3568899999999885 7999999999  667899999999999999997 67789999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.30  E-value=6.8e-12  Score=76.86  Aligned_cols=52  Identities=37%  Similarity=0.469  Sum_probs=45.3

Q ss_pred             CCeeeeEEcC-CCcEEEEEecCC---CCeeeeccCCCCHHHHHHHHHHHHHhhcCC
Q 041516           33 KPYKGIRMRK-WGKWVAEIREPN---KRSRIWLGSYTTPIAAARAYDTAVFYLRGP   84 (118)
Q Consensus        33 S~yrGV~~~~-~gkw~A~I~~~~---~~k~~~LG~f~t~eeAA~AYd~aa~~~~G~   84 (118)
                      |+|+||++++ .++|+|+|++..   .++.++||.|++++||+++|+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899999886 799999998831   148899999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=87.87  E-value=2.3  Score=24.71  Aligned_cols=38  Identities=18%  Similarity=0.231  Sum_probs=30.1

Q ss_pred             cEEEEEe--c--CCCCeeeeccCCCCHHHHHHHHHHHHHhhc
Q 041516           45 KWVAEIR--E--PNKRSRIWLGSYTTPIAAARAYDTAVFYLR   82 (118)
Q Consensus        45 kw~A~I~--~--~~~~k~~~LG~f~t~eeAA~AYd~aa~~~~   82 (118)
                      +|..+|.  .  +|+.++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  2  455688999999999999999988777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		4e-12
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		5e-12

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 35 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 91
          Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 35 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 91
          Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-27

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 95.5 bits (238), Expect = 1e-27
 Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 33 KPYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 91
          K Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 92 ELI 94
            +
Sbjct: 61 LRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	95.46
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	87.66
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	87.15
3ju0_A	108	Phage integrase; four stranded beta-sheet, DNA bin	81.11

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=3.6e-25  Score=140.28  Aligned_cols=61  Identities=52%  Similarity=0.991  Sum_probs=57.1

Q ss_pred             CeeeeEEcCCCcEEEEEecCCC-CeeeeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 041516           34 PYKGIRMRKWGKWVAEIREPNK-RSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI   94 (118)
Q Consensus        34 ~yrGV~~~~~gkw~A~I~~~~~-~k~~~LG~f~t~eeAA~AYd~aa~~~~G~~a~~Nfp~~~   94 (118)
                      +|+||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||.++++++|.++.+|||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            6999999889999999999864 589999999999999999999999999999999999863

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=95.46  E-value=0.012  Score=37.89  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=21.7

Q ss_pred             CCCCCeeeeEEcC-CCcEEEEEecCCCC
Q 041516           30 QQEKPYKGIRMRK-WGKWVAEIREPNKR   56 (118)
Q Consensus        30 ~~~S~yrGV~~~~-~gkw~A~I~~~~~~   56 (118)
                      ..+|+|.||+|++ .+.|.|+-..+++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeE
Confidence            4689999999986 69999998885433

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=87.66  E-value=1.3  Score=28.42  Aligned_cols=45  Identities=27%  Similarity=0.374  Sum_probs=34.6

Q ss_pred             eEEcCCC--cEEEEEecCCCCeeeeccCCC--CHHHHHHHHHHHHHhhc
Q 041516           38 IRMRKWG--KWVAEIREPNKRSRIWLGSYT--TPIAAARAYDTAVFYLR   82 (118)
Q Consensus        38 V~~~~~g--kw~A~I~~~~~~k~~~LG~f~--t~eeAA~AYd~aa~~~~   82 (118)
                      |...++|  .|+-+.+.+++.+++.||.|.  |+.+|....+.+...+-
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~   76 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA   76 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence            3445544  699998888888999999997  78888888877766653

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=87.15  E-value=0.11  Score=37.01  Aligned_cols=38  Identities=13%  Similarity=-0.009  Sum_probs=29.0

Q ss_pred             eeeeEEcCCCcEEEEEecCCCCeeeeccCCCCHHHHHHHHH
Q 041516           35 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYD   75 (118)
Q Consensus        35 yrGV~~~~~gkw~A~I~~~~~~k~~~LG~f~t~eeAA~AYd   75 (118)
                      .+||.+...++|.+.|...   +.++||.|+|.+||+++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence            4566553346688999884   3478999999999999964

>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}

Probab=81.11  E-value=3.1  Score=27.75  Aligned_cols=44  Identities=25%  Similarity=0.295  Sum_probs=33.4

Q ss_pred             eEEcCCC--cEEEEEecCCCCeeeeccCCC--CHHHHHHHHHHHHHhh
Q 041516           38 IRMRKWG--KWVAEIREPNKRSRIWLGSYT--TPIAAARAYDTAVFYL   81 (118)
Q Consensus        38 V~~~~~g--kw~A~I~~~~~~k~~~LG~f~--t~eeAA~AYd~aa~~~   81 (118)
                      |...++|  .|+-+.+.+++.+++.||.|.  |+.+|....+.+...+
T Consensus        28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l   75 (108)
T 3ju0_A           28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL   75 (108)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            3445544  599998888888999999997  6788887777766655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-26

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.9 bits (226), Expect = 2e-26
 Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 33 KPYKGIRMRKWGKWVAEIREPNK-RSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 91
          K Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 92 ELI 94
            +
Sbjct: 61 LRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.5e-25  Score=140.80  Aligned_cols=60  Identities=52%  Similarity=0.977  Sum_probs=55.5

Q ss_pred             CeeeeEEcCCCcEEEEEecCC-CCeeeeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 041516           34 PYKGIRMRKWGKWVAEIREPN-KRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL   93 (118)
Q Consensus        34 ~yrGV~~~~~gkw~A~I~~~~-~~k~~~LG~f~t~eeAA~AYd~aa~~~~G~~a~~Nfp~~   93 (118)
                      +||||+++++|||.|+|+++. +++++|||+|+|+||||+|||.+++.++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999988999999999864 448899999999999999999999999999999999975