BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041517
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BM8|A Chain A, Cmci-N160 Apo-Structure
pdb|2BM8|B Chain B, Cmci-N160 Apo-Structure
pdb|2BM8|C Chain C, Cmci-N160 Apo-Structure
pdb|2BM8|D Chain D, Cmci-N160 Apo-Structure
pdb|2BM8|E Chain E, Cmci-N160 Apo-Structure
pdb|2BM8|F Chain F, Cmci-N160 Apo-Structure
pdb|2BM8|G Chain G, Cmci-N160 Apo-Structure
pdb|2BM8|H Chain H, Cmci-N160 Apo-Structure
pdb|2BM8|I Chain I, Cmci-N160 Apo-Structure
pdb|2BM8|J Chain J, Cmci-N160 Apo-Structure
pdb|2BM8|K Chain K, Cmci-N160 Apo-Structure
pdb|2BM8|L Chain L, Cmci-N160 Apo-Structure
pdb|2BM9|A Chain A, Cmci-N160 In Complex With Sam
pdb|2BM9|B Chain B, Cmci-N160 In Complex With Sam
pdb|2BM9|C Chain C, Cmci-N160 In Complex With Sam
pdb|2BM9|D Chain D, Cmci-N160 In Complex With Sam
pdb|2BM9|E Chain E, Cmci-N160 In Complex With Sam
pdb|2BM9|F Chain F, Cmci-N160 In Complex With Sam
pdb|2BR5|A Chain A, Cmci-N160 Sah
pdb|2BR5|B Chain B, Cmci-N160 Sah
pdb|2BR5|C Chain C, Cmci-N160 Sah
pdb|2BR5|D Chain D, Cmci-N160 Sah
pdb|2BR5|E Chain E, Cmci-N160 Sah
pdb|2BR5|F Chain F, Cmci-N160 Sah
Length = 236
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCID 190
AV+ +++ ++RPR I+E+G + G S +LT+ +G+D Q++ ID
Sbjct: 71 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGID 116
>pdb|2BR3|A Chain A, Cmci-D160 Mg
pdb|2BR3|B Chain B, Cmci-D160 Mg
pdb|2BR3|C Chain C, Cmci-D160 Mg
pdb|2BR3|D Chain D, Cmci-D160 Mg
pdb|2BR3|E Chain E, Cmci-D160 Mg
pdb|2BR3|F Chain F, Cmci-D160 Mg
pdb|2BR4|A Chain A, Cmci-D160 Mg-Sam
pdb|2BR4|B Chain B, Cmci-D160 Mg-Sam
pdb|2BR4|C Chain C, Cmci-D160 Mg-Sam
pdb|2BR4|D Chain D, Cmci-D160 Mg-Sam
pdb|2BR4|E Chain E, Cmci-D160 Mg-Sam
pdb|2BR4|F Chain F, Cmci-D160 Mg-Sam
Length = 236
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCID 190
AV+ +++ ++RPR I+E+G + G S +LT+ +G+D Q++ ID
Sbjct: 71 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGID 116
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 147 FGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202
F N++ K+ + IIE+G+F G S+L A+ L D +ILC D W K+
Sbjct: 51 FLNILTKISGAKRIIEIGTFTGYSSLCFAS---ALPEDGKILCCDVSEEWTNVARKY 104
>pdb|1TEL|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Chlorobium Tepidum
pdb|1TEL|B Chain B, Crystal Structure Of A Rubisco-Like Protein From
Chlorobium Tepidum
Length = 435
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 40/132 (30%)
Query: 173 MANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY----QNAI 228
M L R GLD+ I+ PGF D+ + + L+NVI I
Sbjct: 307 MTKLQRLAGLDAVIM--------PGFGDRM---------MTPEEEVLENVIECTKPMGRI 349
Query: 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288
LPVP S SALT + VG++ DF PG +FGH
Sbjct: 350 KPCLPVPGGSDSALTLQTVYEKVGNV-------DFG------------FVPGRGVFGHPM 390
Query: 289 FTAADNRGVRRA 300
A + +R+A
Sbjct: 391 GPKAGAKSIRQA 402
>pdb|1YKW|A Chain A, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
pdb|1YKW|B Chain B, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
Length = 435
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 40/132 (30%)
Query: 173 MANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY----QNAI 228
M L R GLD+ I+ PGF D+ + + L+NVI I
Sbjct: 307 MTKLQRLAGLDAVIM--------PGFGDRV---------MTPEEEVLENVIECTKPMGRI 349
Query: 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288
LPVP S SALT + VG++ DF PG +FGH
Sbjct: 350 KPCLPVPGGSDSALTLQTVYEKVGNV-------DFG------------FVPGRGVFGHPM 390
Query: 289 FTAADNRGVRRA 300
A + +R+A
Sbjct: 391 GPKAGAKSIRQA 402
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGW 195
LI R + ++E+G+F G SAL M + L D Q++ D GW
Sbjct: 55 LIRLTRAKKVLELGTFTGYSALAM---SLALPDDGQVITCDINEGW 97
>pdb|1E1E|A Chain A, Crystal Structure Of A Monocot (Maize Zmglu1)
Beta-Glucosidase
pdb|1E1E|B Chain B, Crystal Structure Of A Monocot (Maize Zmglu1)
Beta-Glucosidase
pdb|1E1F|A Chain A, Crystal Structure Of A Monocot (Maize Zmglu1)
Beta-Glucosidase In Complex With
P-Nitrophenyl-Beta-D-Thioglucoside
pdb|1E1F|B Chain B, Crystal Structure Of A Monocot (Maize Zmglu1)
Beta-Glucosidase In Complex With
P-Nitrophenyl-Beta-D-Thioglucoside
Length = 512
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 157 RVIIEVGSFLGASALHM----ANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNV 212
R++ S +GA++ HM L +++G+D+ I WP K + +N +
Sbjct: 63 RILDGSNSDIGANSYHMYKTDVRLLKEMGMDAYRFSI----SWPRILPKGTKEGGINPDG 118
Query: 213 LLYFQFLQNVIYQNAIDSVLPV 234
+ Y++ L N++ +N I+ + +
Sbjct: 119 IKYYRNLINLLLENGIEPYVTI 140
>pdb|1E4L|A Chain A, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zm Glu191asp
pdb|1E4L|B Chain B, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zm Glu191asp
pdb|1E4N|A Chain A, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglu E191d In Complex With The
Natural Aglycone Dimboa
pdb|1E4N|B Chain B, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglu E191d In Complex With The
Natural Aglycone Dimboa
pdb|1E55|A Chain A, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglue191d In Complex With The
Competitive Inhibitor Dhurrin
pdb|1E55|B Chain B, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglue191d In Complex With The
Competitive Inhibitor Dhurrin
pdb|1E56|A Chain A, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglue191d In Complex With The
Natural Substrate Dimboa-Beta-D-Glucoside
pdb|1E56|B Chain B, Crystal Structure Of The Inactive Mutant Monocot (Maize
Zmglu1) Beta-Glucosidase Zmglue191d In Complex With The
Natural Substrate Dimboa-Beta-D-Glucoside
pdb|1V08|A Chain A, Crystal Structure Of The Zea Maze Beta-Glucosidase-1 In
Complex With Gluco-Tetrazole
pdb|1V08|B Chain B, Crystal Structure Of The Zea Maze Beta-Glucosidase-1 In
Complex With Gluco-Tetrazole
Length = 512
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 157 RVIIEVGSFLGASALHM----ANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNV 212
R++ S +GA++ HM L +++G+D+ I WP K + +N +
Sbjct: 63 RILDGSNSDIGANSYHMYKTDVRLLKEMGMDAYRFSI----SWPRILPKGTKEGGINPDG 118
Query: 213 LLYFQFLQNVIYQNAIDSVLPV 234
+ Y++ L N++ +N I+ + +
Sbjct: 119 IKYYRNLINLLLENGIEPYVTI 140
>pdb|1HXJ|A Chain A, Crystal Structure Of The Maize Zm-P60.1 Beta-Glucosidase
pdb|1HXJ|B Chain B, Crystal Structure Of The Maize Zm-P60.1 Beta-Glucosidase
Length = 507
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 157 RVIIEVGSFLGASALHM----ANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNV 212
R++ S +GA++ HM L +++G+D+ I WP K + +N +
Sbjct: 58 RILDGSNSDIGANSYHMYKTDVRLLKEMGMDAYRFSI----SWPRILPKGTKEGGINPDG 113
Query: 213 LLYFQFLQNVIYQNAIDSVLPV 234
+ Y++ L N++ +N I+ + +
Sbjct: 114 IKYYRNLINLLLENGIEPYVTI 135
>pdb|1H49|A Chain A, Crystal Structure Of The Inactive Double Mutant Of The
Maize Beta-Glucosidase Zmglu1-E191d-F198v In Complex
With Dimboa-Glucoside
pdb|1H49|B Chain B, Crystal Structure Of The Inactive Double Mutant Of The
Maize Beta-Glucosidase Zmglu1-E191d-F198v In Complex
With Dimboa-Glucoside
Length = 512
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 157 RVIIEVGSFLGASALHM----ANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNV 212
R++ S +GA++ HM L +++G+D+ I WP K + +N +
Sbjct: 63 RILDGSNSDIGANSYHMYKTDVRLLKEMGMDAYRFSI----SWPRILPKGTKEGGINPDG 118
Query: 213 LLYFQFLQNVIYQNAIDSVLPV 234
+ Y++ L N++ +N I+ + +
Sbjct: 119 IKYYRNLINLLLENGIEPYVTI 140
>pdb|3AK5|A Chain A, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|B Chain B, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|C Chain C, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|D Chain D, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
Length = 975
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 106 RQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSF 165
R I+DR +P ++F P + L+ + GAV G +DK R V +GS
Sbjct: 88 RYNIVDR---NNAPSLDFHAPRLDKLVTEVAPTAVTAQGAVAGAYLDKERYPVFYRLGS- 143
Query: 166 LGASALHMAN--LTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV- 222
G + +N LT+ G S + G G ++ M++ + L F + N
Sbjct: 144 -GTQYIKDSNGQLTKMGGAYSWLTG-----GTVGSLSSYQNGEMISTSSGLVFDYKLNGA 197
Query: 223 --IYQNAIDSVLPV 234
IY A DS P+
Sbjct: 198 MPIYGEAGDSGSPL 211
>pdb|1WXR|A Chain A, Crystal Structure Of Heme Binding Protein, An
Autotransporter Hemoglobine Protease From Pathogenic
Escherichia Coli
Length = 1048
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 19/170 (11%)
Query: 106 RQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSF 165
R I+DR +P ++F P + L+ + GAV G +DK R V +GS
Sbjct: 88 RYNIVDR---NNAPSLDFHAPRLDKLVTEVAPTAVTAQGAVAGAYLDKERYPVFYRLGS- 143
Query: 166 LGASALHMAN--LTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN-- 221
G + +N LT+ G S + G G ++ M++ + L F + N
Sbjct: 144 -GTQYIKDSNGQLTKMGGAYSWLT-----GGTVGSLSSYQNGEMISTSSGLVFDYKLNGA 197
Query: 222 -VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADI 270
IY A DS P+ F+ + K W +VG L + + WA I
Sbjct: 198 MPIYGEAGDSGSPL-FAFDTVQNK---WVLVGVLTAGNGAGGRGNNWAVI 243
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCID 190
G LI + ++E+G F G SAL MA QL D QI+ D
Sbjct: 64 LGLLISLTGAKQVLEIGVFRGYSALAMA---LQLPPDGQIIACD 104
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 125 PPHISHLLRRRRIKGW-----GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQ 179
PP + + R+ GW G GA+F ++ PR I G+ LGA L L +
Sbjct: 27 PPKVVLVESSERLGGWIRSVRGPNGAIF-----ELGPRGIRPAGA-LGARTLL---LVSE 77
Query: 180 LGLDSQILCI 189
LGLDS++L +
Sbjct: 78 LGLDSEVLPV 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,090,102
Number of Sequences: 62578
Number of extensions: 365620
Number of successful extensions: 1244
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 16
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)