BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041517
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q50457|RNMT_MYCTU Rhamnosyl O-methyltransferase OS=Mycobacterium tuberculosis
GN=Rv2959c PE=1 SV=1
Length = 245
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD 191
+ ++ +++P ++IE G+ G SA++ AN+ RQ+G ++L +D+
Sbjct: 71 YQEILSELQPSLVIEFGTRYGGSAVYFANIMRQIGQPFKVLTVDN 115
>sp|A5U6W7|RNMT_MYCTA Rhamnosyl O-methyltransferase OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=MRA_2986 PE=3 SV=1
Length = 245
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD 191
+ ++ +++P ++IE G+ G SA++ AN+ RQ+G ++L +D+
Sbjct: 71 YQEILSELQPSLVIEFGTRYGGSAVYFANIMRQIGQPFKVLTVDN 115
>sp|A1KMV3|RNMT_MYCBP Rhamnosyl O-methyltransferase OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=BCG_2980c PE=3 SV=1
Length = 245
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD 191
+ ++ +++P ++IE G+ G SA++ AN+ RQ+G ++L +D+
Sbjct: 71 YQEILSELQPSLVIEFGTRYGGSAVYFANIMRQIGQPFKVLTVDN 115
>sp|Q7TXJ7|RNMT_MYCBO Rhamnosyl O-methyltransferase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2983c PE=3 SV=1
Length = 245
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD 191
+ ++ +++P ++IE G+ G SA++ AN+ RQ+G ++L +D+
Sbjct: 71 YQEILSELQPSLVIEFGTRYGGSAVYFANIMRQIGQPFKVLTVDN 115
>sp|Q83CU5|BIOB_COXBU Biotin synthase OS=Coxiella burnetii (strain RSA 493 / Nine Mile
phase I) GN=bioB PE=3 SV=1
Length = 321
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285
AID P F A+T+L +I + AG + A +D +AW + IF
Sbjct: 235 KAID---PFEFIKTIAITRLL---FPTSVIRLSAGRE---AMSDELQAWCFMAGANSIFY 285
Query: 286 HDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWVIH 322
D A N G R VNL K+ GLKV + + + +
Sbjct: 286 GDKLLTAKNPGQNRDVNLLKKL-GLKVPVLTEEYACY 321
>sp|A9NCS0|BIOB_COXBR Biotin synthase OS=Coxiella burnetii (strain RSA 331 / Henzerling
II) GN=bioB PE=3 SV=1
Length = 321
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285
AID P F A+T+L +I + AG + A +D +AW + IF
Sbjct: 235 KAID---PFEFIKTIAITRLL---FPTSVIRLSAGRE---AMSDELQAWCFMAGANSIFY 285
Query: 286 HDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWVIH 322
D A N G R VNL K+ GLKV + + + +
Sbjct: 286 GDKLLTAKNPGQNRDVNLLKKL-GLKVPVLTEEYACY 321
>sp|A9KG71|BIOB_COXBN Biotin synthase OS=Coxiella burnetii (strain Dugway 5J108-111)
GN=bioB PE=3 SV=1
Length = 321
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285
AID P F A+T+L +I + AG + A +D +AW + IF
Sbjct: 235 KAID---PFEFIKTIAITRLL---FPTSVIRLSAGRE---AMSDELQAWCFMAGANSIFY 285
Query: 286 HDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWVIH 322
D A N G R VNL K+ GLKV + + + +
Sbjct: 286 GDKLLTAKNPGQNRDVNLLKKL-GLKVPVLTEEYACY 321
>sp|B6J074|BIOB_COXB2 Biotin synthase OS=Coxiella burnetii (strain CbuG_Q212) GN=bioB
PE=3 SV=1
Length = 321
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285
AID P F A+T+L +I + AG + A +D +AW + IF
Sbjct: 235 KAID---PFEFIKTIAITRLL---FPTSVIRLSAGRE---AMSDELQAWCFMAGANSIFY 285
Query: 286 HDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWVIH 322
D A N G R VNL K+ GLKV + + + +
Sbjct: 286 GDKLLTAKNPGQNRDVNLLKKL-GLKVPVLTEEYACY 321
>sp|B6J725|BIOB_COXB1 Biotin synthase OS=Coxiella burnetii (strain CbuK_Q154) GN=bioB
PE=3 SV=1
Length = 321
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285
AID P F A+T+L +I + AG + A +D +AW + IF
Sbjct: 235 KAID---PFEFIKTIAITRLL---FPTSVIRLSAGRE---AMSDELQAWCFMAGANSIFY 285
Query: 286 HDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWVIH 322
D A N G R VNL K+ GLKV + + + +
Sbjct: 286 GDKLLTAKNPGQNRDVNLLKKL-GLKVPVLTEEYACY 321
>sp|Q9CD89|RNMT_MYCLE Rhamnosyl O-methyltransferase OS=Mycobacterium leprae (strain TN)
GN=ML0127 PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCID 190
+ ++ ++ P ++IE GS G SAL AN+ +G ++L +D
Sbjct: 56 YQEILIELEPSLVIEFGSRFGGSALFFANVMMHIGQPFKVLSVD 99
>sp|P55465|Y4GI_RHISN Uncharacterized protein y4gI OS=Rhizobium sp. (strain NGR234)
GN=NGR_a03550 PE=4 SV=1
Length = 909
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 19/152 (12%)
Query: 139 GWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG--WP 196
W +G L+ +RPR I+E+G+ G S L ++ +D ++G
Sbjct: 33 AWLRHGPFGMWLVHALRPRRIVELGTHYGFSYFCFCQAVAAGDLATECFAVDTWQGDEHA 92
Query: 197 GFR-DKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLI 255
GF ++ M + + F L + A+D + S++ DL+
Sbjct: 93 GFYGEEIYHRVMAHNQQYVRFSRLLRKTFTEALDDI------EDSSV----------DLL 136
Query: 256 EIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287
+D H ++ AD L P V+ HD
Sbjct: 137 HVDGRHFYHDVKADFENWIPKLSPRSVVLFHD 168
>sp|Q9HC84|MUC5B_HUMAN Mucin-5B OS=Homo sapiens GN=MUC5B PE=1 SV=3
Length = 5762
Score = 33.1 bits (74), Expect = 3.2, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 42 LSSPKP-----HTPPPPPPSRPRAGAGAGAATATATATSNSTIQLPPSLLDNFRVTT 93
LSSP P +PP P + P G TATAT + T L PS + +TT
Sbjct: 3509 LSSPHPSSRTTESPPSPGTTTPGHTRGTSRTTATATPSKTRTSTLLPSSPTSAPITT 3565
>sp|A1Z9P3|SHRM_DROME Protein Shroom OS=Drosophila melanogaster GN=Shroom PE=1 SV=2
Length = 1576
Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 51 PPPPPSRP-RAGAGAGAATATATATSNSTIQLPPSLLDNFRVTTRCAADSVPPQLVRQTI 109
P PP +P + G + A + +T N Q P + +D++R R S T
Sbjct: 446 PQPPAGKPSKLQLSLGKSEALSCSTPNMGEQSPTNSIDSYRSNHRLFPVS--------TY 497
Query: 110 IDRIFNGTSPYVNFPPPHISHLLRR 134
+ + + TS YV P P S L +
Sbjct: 498 TEPVHSNTSQYVQHPKPQFSSGLHK 522
>sp|Q00719|MDMC_STRMY O-methyltransferase MdmC OS=Streptomyces mycarofaciens GN=mdmC PE=3
SV=1
Length = 221
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIP 206
G LI V R ++E+G+F G S L MA R L +I+ D WPG F +
Sbjct: 52 LGLLIRLVGARRVLEIGTFTGYSTLCMA---RALPAGGRIVTCDISDKWPGIGAPFWQRA 108
Query: 207 MVNGNVLL 214
V+G + L
Sbjct: 109 GVDGLIDL 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,191,192
Number of Sequences: 539616
Number of extensions: 5843169
Number of successful extensions: 41958
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 40127
Number of HSP's gapped (non-prelim): 1448
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)