Query 041517
Match_columns 327
No_of_seqs 214 out of 1416
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4122 Predicted O-methyltran 99.9 7.6E-24 1.7E-28 193.1 15.1 152 141-319 45-212 (219)
2 PLN02589 caffeoyl-CoA O-methyl 99.9 7.9E-24 1.7E-28 196.9 15.3 164 81-291 24-194 (247)
3 PF01596 Methyltransf_3: O-met 99.9 5.9E-24 1.3E-28 192.8 13.1 153 142-321 32-201 (205)
4 PLN02476 O-methyltransferase 99.9 3.3E-23 7.1E-28 195.4 15.6 193 80-321 65-274 (278)
5 PLN02781 Probable caffeoyl-CoA 99.9 1.7E-21 3.6E-26 180.0 16.3 166 81-290 11-181 (234)
6 KOG1663 O-methyltransferase [S 99.8 2.4E-20 5.2E-25 169.5 11.4 123 141-290 59-186 (237)
7 PF13578 Methyltransf_24: Meth 99.7 2E-18 4.3E-23 139.5 4.7 105 160-288 1-106 (106)
8 PF05711 TylF: Macrocin-O-meth 99.7 1.7E-17 3.7E-22 154.3 11.5 149 155-311 74-232 (248)
9 PF12847 Methyltransf_18: Meth 99.5 1.1E-13 2.4E-18 111.6 7.6 106 155-287 1-111 (112)
10 PF01209 Ubie_methyltran: ubiE 99.4 5.5E-13 1.2E-17 123.3 8.6 166 106-306 5-171 (233)
11 PF04989 CmcI: Cephalosporin h 99.4 1.7E-12 3.6E-17 117.6 10.8 149 142-315 19-186 (206)
12 PLN03075 nicotianamine synthas 99.4 2E-12 4.3E-17 123.2 11.3 120 143-288 112-234 (296)
13 COG2226 UbiE Methylase involve 99.4 5E-12 1.1E-16 117.1 13.0 124 155-307 51-175 (238)
14 PRK00377 cbiT cobalt-precorrin 99.4 1.3E-11 2.9E-16 110.7 13.6 126 154-311 39-164 (198)
15 PRK04457 spermidine synthase; 99.3 1.1E-11 2.5E-16 116.4 13.4 119 146-290 57-180 (262)
16 PRK00107 gidB 16S rRNA methylt 99.3 3E-11 6.5E-16 108.3 14.7 120 156-313 46-165 (187)
17 PLN02396 hexaprenyldihydroxybe 99.3 1E-11 2.2E-16 120.1 12.1 107 155-290 131-238 (322)
18 COG2519 GCD14 tRNA(1-methylade 99.3 2.1E-11 4.5E-16 113.0 13.1 140 146-321 85-228 (256)
19 PRK00121 trmB tRNA (guanine-N( 99.3 2.1E-11 4.5E-16 110.1 12.2 149 144-326 31-190 (202)
20 TIGR00138 gidB 16S rRNA methyl 99.3 5.4E-11 1.2E-15 105.9 13.8 126 152-312 39-164 (181)
21 PRK13942 protein-L-isoaspartat 99.3 1.6E-11 3.4E-16 111.7 10.5 103 152-286 73-175 (212)
22 COG2242 CobL Precorrin-6B meth 99.3 7.5E-11 1.6E-15 105.0 14.2 123 152-310 31-153 (187)
23 PRK13944 protein-L-isoaspartat 99.3 2E-11 4.4E-16 110.4 10.7 102 155-287 72-173 (205)
24 PF08704 GCD14: tRNA methyltra 99.3 3.3E-11 7.1E-16 112.4 11.8 146 144-323 29-181 (247)
25 COG2518 Pcm Protein-L-isoaspar 99.3 2.6E-11 5.7E-16 109.9 9.5 109 142-286 60-168 (209)
26 PRK07402 precorrin-6B methylas 99.3 9.1E-11 2E-15 105.0 13.0 115 146-290 31-145 (196)
27 TIGR00080 pimt protein-L-isoas 99.2 4E-11 8.7E-16 109.0 10.6 103 152-286 74-176 (215)
28 PRK11036 putative S-adenosyl-L 99.2 3.4E-11 7.3E-16 112.1 9.9 107 155-289 44-151 (255)
29 PRK08287 cobalt-precorrin-6Y C 99.2 1.8E-10 3.8E-15 102.3 13.7 122 152-310 28-149 (187)
30 PF01135 PCMT: Protein-L-isoas 99.2 2.6E-11 5.7E-16 110.5 8.5 109 144-285 62-170 (209)
31 PLN02233 ubiquinone biosynthes 99.2 2.2E-10 4.8E-15 107.4 14.3 115 152-290 70-185 (261)
32 TIGR02752 MenG_heptapren 2-hep 99.2 2.3E-10 5E-15 104.3 13.7 109 155-290 45-154 (231)
33 TIGR02469 CbiT precorrin-6Y C5 99.2 1.3E-10 2.8E-15 94.6 10.2 104 155-287 19-122 (124)
34 PLN02244 tocopherol O-methyltr 99.2 1.7E-10 3.7E-15 112.2 11.8 108 155-290 118-226 (340)
35 PF13847 Methyltransf_31: Meth 99.1 1.7E-10 3.6E-15 98.9 8.9 109 155-290 3-113 (152)
36 PRK00312 pcm protein-L-isoaspa 99.1 3.3E-10 7.2E-15 102.5 10.1 103 151-288 74-176 (212)
37 PRK01581 speE spermidine synth 99.1 1.5E-09 3.3E-14 106.0 14.2 140 152-313 147-293 (374)
38 PTZ00098 phosphoethanolamine N 99.1 1.2E-09 2.5E-14 102.7 12.3 105 155-290 52-159 (263)
39 PRK00811 spermidine synthase; 99.1 1.7E-09 3.8E-14 102.7 13.5 111 154-287 75-191 (283)
40 PRK15128 23S rRNA m(5)C1962 me 99.1 4.3E-09 9.3E-14 104.5 16.5 137 153-316 218-368 (396)
41 PF05175 MTS: Methyltransferas 99.1 2.7E-09 5.9E-14 93.6 12.9 139 146-320 22-167 (170)
42 PRK00517 prmA ribosomal protei 99.1 3.1E-09 6.8E-14 98.9 14.0 135 144-321 107-244 (250)
43 PRK04266 fibrillarin; Provisio 99.1 2.8E-09 6E-14 98.3 13.3 139 143-313 58-206 (226)
44 PF08241 Methyltransf_11: Meth 99.0 3.3E-10 7.2E-15 87.5 5.8 94 160-285 1-95 (95)
45 TIGR00477 tehB tellurite resis 99.0 1.1E-09 2.4E-14 98.3 10.0 110 146-288 22-134 (195)
46 TIGR00537 hemK_rel_arch HemK-r 99.0 4.6E-09 9.9E-14 92.6 13.7 132 145-314 9-162 (179)
47 PRK14903 16S rRNA methyltransf 99.0 3.1E-09 6.8E-14 106.6 14.1 140 145-312 227-390 (431)
48 PRK11873 arsM arsenite S-adeno 99.0 3.1E-09 6.7E-14 99.6 12.9 109 155-290 77-186 (272)
49 TIGR00740 methyltransferase, p 99.0 6E-09 1.3E-13 95.9 14.5 109 155-290 53-164 (239)
50 smart00828 PKS_MT Methyltransf 99.0 2.3E-09 5.1E-14 97.2 10.7 128 157-313 1-140 (224)
51 PRK11207 tellurite resistance 99.0 1.8E-09 3.8E-14 97.1 9.7 107 151-288 26-136 (197)
52 PRK15451 tRNA cmo(5)U34 methyl 99.0 5.7E-09 1.2E-13 96.9 13.3 109 155-290 56-167 (247)
53 PRK14902 16S rRNA methyltransf 99.0 5.1E-09 1.1E-13 105.3 13.8 141 145-313 240-404 (444)
54 COG2227 UbiG 2-polyprenyl-3-me 99.0 1.4E-09 3E-14 100.3 8.6 107 154-291 58-165 (243)
55 TIGR03533 L3_gln_methyl protei 99.0 7.7E-09 1.7E-13 98.3 13.8 122 155-311 121-268 (284)
56 PRK10258 biotin biosynthesis p 99.0 3.2E-09 6.9E-14 98.3 11.0 101 155-290 42-143 (251)
57 PLN02366 spermidine synthase 99.0 7.7E-09 1.7E-13 99.5 13.2 110 154-287 90-206 (308)
58 PRK01683 trans-aconitate 2-met 99.0 2.6E-09 5.7E-14 99.1 9.7 99 154-286 30-129 (258)
59 TIGR00406 prmA ribosomal prote 99.0 1E-08 2.2E-13 97.5 13.9 104 155-290 159-262 (288)
60 PRK11783 rlmL 23S rRNA m(2)G24 99.0 1.2E-08 2.7E-13 108.0 15.8 132 150-314 533-677 (702)
61 TIGR00091 tRNA (guanine-N(7)-) 99.0 4.1E-09 8.8E-14 94.5 10.4 105 155-286 16-131 (194)
62 PRK14103 trans-aconitate 2-met 99.0 2.4E-09 5.3E-14 99.5 9.0 98 154-287 28-126 (255)
63 PRK14904 16S rRNA methyltransf 99.0 1.3E-08 2.8E-13 102.4 14.8 137 146-312 241-401 (445)
64 PRK14901 16S rRNA methyltransf 98.9 1.2E-08 2.6E-13 102.4 14.0 141 145-313 242-409 (434)
65 TIGR00417 speE spermidine synt 98.9 7.7E-09 1.7E-13 97.5 10.9 109 154-286 71-185 (270)
66 PF13659 Methyltransf_26: Meth 98.9 6.1E-09 1.3E-13 84.5 8.6 102 157-285 2-113 (117)
67 KOG1661 Protein-L-isoaspartate 98.9 3E-09 6.4E-14 96.2 7.3 175 81-285 9-191 (237)
68 PRK13943 protein-L-isoaspartat 98.9 6.6E-09 1.4E-13 100.6 10.0 110 145-286 67-179 (322)
69 PRK12335 tellurite resistance 98.9 7.6E-09 1.7E-13 98.2 10.0 102 152-285 117-221 (287)
70 TIGR00446 nop2p NOL1/NOP2/sun 98.9 3.8E-08 8.2E-13 92.5 14.4 131 149-308 65-218 (264)
71 PRK08317 hypothetical protein; 98.9 1.8E-08 3.9E-13 90.8 11.8 112 151-290 15-127 (241)
72 PF13649 Methyltransf_25: Meth 98.9 2.3E-09 5.1E-14 85.5 5.2 97 159-281 1-101 (101)
73 PRK03612 spermidine synthase; 98.9 3.7E-08 8.1E-13 101.1 15.0 136 154-311 296-438 (521)
74 TIGR00563 rsmB ribosomal RNA s 98.9 2.3E-08 5E-13 100.1 13.1 121 145-291 228-372 (426)
75 PF08242 Methyltransf_12: Meth 98.9 3.3E-09 7.1E-14 84.1 5.5 98 160-283 1-99 (99)
76 COG3510 CmcI Cephalosporin hyd 98.9 2.7E-08 5.8E-13 88.9 11.8 136 145-309 59-211 (237)
77 PLN02336 phosphoethanolamine N 98.9 2.2E-08 4.9E-13 101.1 12.9 107 155-291 266-373 (475)
78 PRK00216 ubiE ubiquinone/menaq 98.9 4.4E-08 9.4E-13 88.8 13.5 110 155-290 51-161 (239)
79 PRK11805 N5-glutamine S-adenos 98.9 3.6E-08 7.7E-13 94.8 13.3 119 157-310 135-279 (307)
80 TIGR02072 BioC biotin biosynth 98.9 2.6E-08 5.6E-13 90.0 11.7 104 155-290 34-138 (240)
81 PRK15068 tRNA mo(5)U34 methylt 98.8 1.6E-08 3.5E-13 97.8 10.7 108 153-289 120-228 (322)
82 PRK05134 bifunctional 3-demeth 98.8 6.9E-08 1.5E-12 88.2 14.1 114 146-289 39-153 (233)
83 COG2230 Cfa Cyclopropane fatty 98.8 2.4E-08 5.2E-13 94.6 11.1 114 146-290 60-179 (283)
84 TIGR00536 hemK_fam HemK family 98.8 5.7E-08 1.2E-12 92.1 12.9 120 157-310 116-262 (284)
85 PRK14968 putative methyltransf 98.8 9.8E-08 2.1E-12 83.6 13.5 130 150-313 18-169 (188)
86 PF13489 Methyltransf_23: Meth 98.8 1.8E-08 3.9E-13 85.5 8.5 106 145-290 11-118 (161)
87 PRK15001 SAM-dependent 23S rib 98.8 7.3E-08 1.6E-12 95.2 13.7 138 156-325 229-372 (378)
88 PLN02823 spermine synthase 98.8 3.1E-08 6.8E-13 96.4 11.0 109 154-286 102-219 (336)
89 TIGR03534 RF_mod_PrmC protein- 98.8 1.1E-07 2.4E-12 87.2 14.1 135 142-311 72-235 (251)
90 COG1092 Predicted SAM-dependen 98.8 6.8E-08 1.5E-12 95.6 13.4 142 146-314 208-363 (393)
91 PF02353 CMAS: Mycolic acid cy 98.8 2.2E-08 4.8E-13 94.8 9.6 117 143-290 47-169 (273)
92 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 1.1E-07 2.3E-12 85.3 13.5 107 155-290 39-146 (223)
93 PRK14967 putative methyltransf 98.8 1.4E-07 3.1E-12 86.1 14.6 129 156-320 37-187 (223)
94 TIGR03587 Pse_Me-ase pseudamin 98.8 6.8E-08 1.5E-12 87.6 12.3 101 154-290 42-145 (204)
95 COG4123 Predicted O-methyltran 98.8 2.3E-08 4.9E-13 93.2 9.1 120 140-285 29-168 (248)
96 TIGR02716 C20_methyl_CrtF C-20 98.8 6.9E-08 1.5E-12 92.2 12.6 107 154-290 148-257 (306)
97 PRK10901 16S rRNA methyltransf 98.8 8.9E-08 1.9E-12 95.9 13.4 138 146-313 235-397 (427)
98 COG4106 Tam Trans-aconitate me 98.8 8.3E-09 1.8E-13 93.8 5.1 103 153-289 28-131 (257)
99 PF05401 NodS: Nodulation prot 98.8 3.3E-08 7.1E-13 89.0 8.9 170 106-323 5-193 (201)
100 PRK10909 rsmD 16S rRNA m(2)G96 98.8 1.1E-07 2.5E-12 86.0 12.4 116 146-289 44-161 (199)
101 PLN02490 MPBQ/MSBQ methyltrans 98.7 1.4E-07 3E-12 92.0 13.3 102 155-287 113-215 (340)
102 PTZ00146 fibrillarin; Provisio 98.7 1.3E-07 2.9E-12 90.1 12.5 105 156-290 133-239 (293)
103 PRK09489 rsmC 16S ribosomal RN 98.7 1.2E-07 2.7E-12 92.5 12.4 142 146-325 188-335 (342)
104 COG2264 PrmA Ribosomal protein 98.7 1.3E-07 2.8E-12 90.4 12.0 139 146-320 152-293 (300)
105 PF03848 TehB: Tellurite resis 98.7 6.4E-08 1.4E-12 87.1 9.4 116 148-295 23-141 (192)
106 PRK09328 N5-glutamine S-adenos 98.7 1.8E-07 4E-12 87.2 12.8 134 143-311 93-256 (275)
107 PRK06922 hypothetical protein; 98.7 1E-07 2.3E-12 99.2 11.9 114 148-290 411-540 (677)
108 PRK01544 bifunctional N5-gluta 98.7 2.1E-07 4.6E-12 95.2 13.4 122 156-311 139-287 (506)
109 KOG1270 Methyltransferases [Co 98.7 8.7E-09 1.9E-13 96.0 2.6 107 157-290 91-198 (282)
110 TIGR03704 PrmC_rel_meth putati 98.7 5.4E-07 1.2E-11 84.2 14.6 122 156-313 87-236 (251)
111 PRK14121 tRNA (guanine-N(7)-)- 98.7 4.2E-07 9E-12 89.9 14.4 113 145-285 113-233 (390)
112 PLN02336 phosphoethanolamine N 98.7 1.9E-07 4.1E-12 94.4 12.2 105 155-290 37-145 (475)
113 PRK11188 rrmJ 23S rRNA methylt 98.7 2.3E-07 5E-12 84.4 11.6 99 155-290 51-168 (209)
114 PRK06202 hypothetical protein; 98.6 1.4E-07 3E-12 86.5 9.7 114 148-290 53-169 (232)
115 TIGR00452 methyltransferase, p 98.6 2E-07 4.4E-12 90.0 11.1 107 154-289 120-227 (314)
116 PRK14966 unknown domain/N5-glu 98.6 4.5E-07 9.8E-12 90.4 13.5 135 142-311 237-399 (423)
117 PRK07580 Mg-protoporphyrin IX 98.6 2.3E-07 4.9E-12 84.2 10.4 100 154-285 62-164 (230)
118 TIGR01983 UbiG ubiquinone bios 98.6 2.4E-07 5.3E-12 83.8 10.5 106 155-289 45-151 (224)
119 COG2521 Predicted archaeal met 98.6 2.1E-07 4.5E-12 85.7 9.7 159 128-317 108-277 (287)
120 PRK11705 cyclopropane fatty ac 98.6 1.9E-07 4E-12 92.5 10.2 101 155-290 167-270 (383)
121 TIGR00438 rrmJ cell division p 98.6 5.9E-07 1.3E-11 79.8 12.5 99 154-289 31-148 (188)
122 TIGR03438 probable methyltrans 98.6 2.8E-07 6E-12 88.3 11.0 105 156-285 64-175 (301)
123 PRK11088 rrmA 23S rRNA methylt 98.6 1.5E-07 3.2E-12 88.6 9.0 98 155-288 85-182 (272)
124 TIGR03840 TMPT_Se_Te thiopurin 98.6 2.6E-07 5.7E-12 84.4 10.0 117 155-288 34-153 (213)
125 PRK03522 rumB 23S rRNA methylu 98.6 4.5E-07 9.9E-12 87.3 11.9 101 154-285 172-272 (315)
126 KOG4300 Predicted methyltransf 98.6 2E-07 4.4E-12 84.4 8.7 104 156-290 77-185 (252)
127 cd02440 AdoMet_MTases S-adenos 98.6 4.2E-07 9E-12 69.3 9.2 101 158-286 1-103 (107)
128 TIGR00095 RNA methyltransferas 98.6 9.5E-07 2.1E-11 79.2 12.8 117 146-289 40-161 (189)
129 PRK05785 hypothetical protein; 98.6 8.2E-07 1.8E-11 81.7 12.0 100 145-281 40-141 (226)
130 TIGR02021 BchM-ChlM magnesium 98.5 4.2E-07 9E-12 82.5 9.8 112 145-288 44-159 (219)
131 TIGR01177 conserved hypothetic 98.5 3.6E-07 7.8E-12 88.4 9.8 107 150-286 177-293 (329)
132 PF06325 PrmA: Ribosomal prote 98.5 3.5E-07 7.6E-12 87.6 9.4 137 144-320 149-288 (295)
133 KOG1540 Ubiquinone biosynthesi 98.5 6.2E-07 1.3E-11 83.5 10.5 132 156-314 101-236 (296)
134 COG0421 SpeE Spermidine syntha 98.5 9.2E-07 2E-11 84.2 10.4 109 155-286 76-189 (282)
135 PF01564 Spermine_synth: Sperm 98.4 2.5E-06 5.3E-11 79.7 12.2 135 155-313 76-216 (246)
136 PRK13255 thiopurine S-methyltr 98.4 1.6E-06 3.5E-11 79.5 9.4 115 155-289 37-159 (218)
137 PRK11933 yebU rRNA (cytosine-C 98.4 6.8E-06 1.5E-10 83.5 14.8 127 154-308 112-261 (470)
138 smart00138 MeTrc Methyltransfe 98.4 9.4E-07 2E-11 83.2 8.0 130 155-288 99-243 (264)
139 PF10672 Methyltrans_SAM: S-ad 98.4 3.8E-06 8.3E-11 80.1 11.7 114 150-290 118-241 (286)
140 PLN02585 magnesium protoporphy 98.4 7.7E-06 1.7E-10 79.1 13.7 130 155-314 144-296 (315)
141 TIGR00479 rumA 23S rRNA (uraci 98.3 3.9E-06 8.4E-11 84.1 11.7 99 156-285 293-394 (431)
142 COG2890 HemK Methylase of poly 98.3 5.4E-06 1.2E-10 78.8 12.1 132 142-309 95-254 (280)
143 COG2813 RsmC 16S RNA G1207 met 98.3 4.2E-06 9E-11 79.9 11.0 143 146-326 150-299 (300)
144 TIGR02085 meth_trns_rumB 23S r 98.3 3.9E-06 8.4E-11 82.9 11.2 101 155-286 233-333 (374)
145 PF08003 Methyltransf_9: Prote 98.3 8.2E-06 1.8E-10 78.1 12.6 147 133-311 95-261 (315)
146 KOG2904 Predicted methyltransf 98.3 3.3E-06 7.3E-11 79.4 9.7 126 142-290 129-288 (328)
147 smart00650 rADc Ribosomal RNA 98.3 4.8E-06 1E-10 72.8 10.3 100 155-288 13-114 (169)
148 KOG1271 Methyltransferases [Ge 98.3 3.3E-06 7.2E-11 75.3 9.0 124 156-312 68-200 (227)
149 PRK13168 rumA 23S rRNA m(5)U19 98.3 5.4E-06 1.2E-10 83.5 11.5 108 146-285 285-398 (443)
150 PLN02672 methionine S-methyltr 98.3 4.9E-06 1.1E-10 91.4 11.8 141 156-315 119-301 (1082)
151 PF02390 Methyltransf_4: Putat 98.2 5.3E-06 1.2E-10 74.8 8.8 101 158-285 20-131 (195)
152 COG0220 Predicted S-adenosylme 98.2 1.2E-05 2.5E-10 74.4 11.0 103 156-285 49-162 (227)
153 KOG2361 Predicted methyltransf 98.2 1.2E-06 2.6E-11 81.0 4.2 112 156-290 72-186 (264)
154 PF03602 Cons_hypoth95: Conser 98.2 1E-05 2.2E-10 72.4 9.9 119 144-289 30-155 (183)
155 PHA03412 putative methyltransf 98.2 1.6E-05 3.4E-10 73.9 10.7 128 154-313 48-198 (241)
156 PF10294 Methyltransf_16: Puta 98.1 2E-05 4.2E-10 69.6 10.2 110 153-287 43-156 (173)
157 KOG3010 Methyltransferase [Gen 98.1 9.9E-06 2.1E-10 75.0 7.9 131 146-306 23-157 (261)
158 PHA03411 putative methyltransf 98.1 3.9E-05 8.4E-10 72.8 11.9 124 155-313 64-210 (279)
159 PRK05031 tRNA (uracil-5-)-meth 98.1 3.4E-05 7.3E-10 75.9 11.6 87 145-260 194-297 (362)
160 PRK04338 N(2),N(2)-dimethylgua 98.1 2.1E-05 4.6E-10 78.0 10.0 99 157-286 59-157 (382)
161 KOG2915 tRNA(1-methyladenosine 98.1 4.3E-05 9.2E-10 72.0 11.2 133 142-307 92-226 (314)
162 KOG2899 Predicted methyltransf 98.0 1.4E-05 3E-10 74.2 7.5 125 154-290 57-212 (288)
163 TIGR02143 trmA_only tRNA (urac 98.0 4.8E-05 1E-09 74.6 11.7 108 145-285 185-309 (353)
164 PF05185 PRMT5: PRMT5 arginine 98.0 1.8E-05 3.9E-10 80.0 8.0 109 156-288 187-298 (448)
165 TIGR02081 metW methionine bios 98.0 2.2E-05 4.7E-10 70.1 7.7 90 155-279 13-104 (194)
166 PF07279 DUF1442: Protein of u 98.0 8.9E-05 1.9E-09 67.7 11.2 121 143-290 29-152 (218)
167 COG0742 N6-adenine-specific me 98.0 0.00013 2.8E-09 65.4 12.0 118 144-288 31-155 (187)
168 TIGR00308 TRM1 tRNA(guanine-26 98.0 6.2E-05 1.3E-09 74.5 11.0 101 157-286 46-146 (374)
169 PF06080 DUF938: Protein of un 97.9 8.6E-05 1.9E-09 67.5 10.2 146 144-313 12-188 (204)
170 PF05724 TPMT: Thiopurine S-me 97.9 5.6E-05 1.2E-09 69.4 8.9 139 155-313 37-186 (218)
171 PF09445 Methyltransf_15: RNA 97.9 2.8E-05 6E-10 68.4 5.9 74 157-258 1-76 (163)
172 PRK00536 speE spermidine synth 97.8 9.3E-05 2E-09 69.8 9.6 105 153-290 70-174 (262)
173 COG2263 Predicted RNA methylas 97.8 0.00025 5.5E-09 63.6 11.7 117 155-313 45-164 (198)
174 PRK13256 thiopurine S-methyltr 97.8 6.7E-05 1.4E-09 69.4 8.3 113 156-287 44-163 (226)
175 PTZ00338 dimethyladenosine tra 97.8 0.00018 3.9E-09 69.0 11.1 96 146-274 24-122 (294)
176 PF02475 Met_10: Met-10+ like- 97.8 5E-05 1.1E-09 68.9 6.5 100 155-285 101-200 (200)
177 KOG1541 Predicted protein carb 97.7 0.00011 2.3E-09 67.5 7.8 102 155-290 50-163 (270)
178 COG2520 Predicted methyltransf 97.7 0.0004 8.6E-09 67.8 11.6 127 155-312 188-315 (341)
179 COG4976 Predicted methyltransf 97.7 3.2E-05 7E-10 71.3 3.8 139 145-317 112-265 (287)
180 PF00891 Methyltransf_2: O-met 97.7 0.00013 2.9E-09 67.0 8.0 99 155-291 100-203 (241)
181 PRK11727 23S rRNA mA1618 methy 97.7 0.00065 1.4E-08 66.0 12.5 77 156-258 115-196 (321)
182 KOG1499 Protein arginine N-met 97.6 0.00011 2.5E-09 71.2 6.6 105 153-287 58-167 (346)
183 PLN02232 ubiquinone biosynthes 97.6 0.00011 2.4E-09 63.8 5.6 83 187-290 1-84 (160)
184 PF12147 Methyltransf_20: Puta 97.6 0.0014 3E-08 62.6 13.2 136 154-323 134-276 (311)
185 PF07021 MetW: Methionine bios 97.5 0.00027 5.8E-09 63.6 7.5 122 156-313 14-163 (193)
186 COG0144 Sun tRNA and rRNA cyto 97.5 0.0019 4.1E-08 63.5 13.8 143 145-314 146-314 (355)
187 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00029 6.4E-09 67.6 7.7 78 155-260 19-99 (296)
188 PF02527 GidB: rRNA small subu 97.5 0.00036 7.7E-09 62.6 7.8 96 158-286 51-147 (184)
189 TIGR00755 ksgA dimethyladenosi 97.5 0.00065 1.4E-08 63.3 9.3 41 155-201 29-69 (253)
190 PRK01544 bifunctional N5-gluta 97.4 0.00078 1.7E-08 69.2 10.3 103 156-285 348-460 (506)
191 PF05148 Methyltransf_8: Hypot 97.4 0.00071 1.5E-08 61.8 8.4 130 135-313 50-181 (219)
192 PRK04148 hypothetical protein; 97.4 0.00038 8.2E-09 59.3 5.7 41 155-201 16-57 (134)
193 KOG1500 Protein arginine N-met 97.3 0.00053 1.1E-08 66.5 7.1 106 155-290 177-287 (517)
194 PRK00274 ksgA 16S ribosomal RN 97.3 0.00049 1.1E-08 65.0 6.3 86 155-276 42-128 (272)
195 PF03059 NAS: Nicotianamine sy 97.3 0.00083 1.8E-08 63.8 7.8 106 156-286 121-229 (276)
196 KOG1709 Guanidinoacetate methy 97.3 0.00096 2.1E-08 61.2 7.7 124 137-290 83-209 (271)
197 TIGR00478 tly hemolysin TlyA f 97.3 0.00078 1.7E-08 62.4 7.3 38 155-197 75-112 (228)
198 PF03141 Methyltransf_29: Puta 97.3 0.00055 1.2E-08 69.4 6.6 135 156-326 118-263 (506)
199 PF04816 DUF633: Family of unk 97.2 0.0017 3.8E-08 59.1 9.2 120 159-313 1-120 (205)
200 PF01739 CheR: CheR methyltran 97.2 0.00051 1.1E-08 62.1 5.2 132 155-287 31-175 (196)
201 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.0036 7.9E-08 59.6 11.3 140 146-313 76-244 (283)
202 PF06962 rRNA_methylase: Putat 97.2 0.0012 2.6E-08 56.6 7.2 103 185-309 1-114 (140)
203 PF08123 DOT1: Histone methyla 97.2 0.0026 5.6E-08 58.0 9.7 115 155-287 42-158 (205)
204 PRK14896 ksgA 16S ribosomal RN 97.2 0.00081 1.8E-08 63.0 6.3 41 155-201 29-69 (258)
205 PF01728 FtsJ: FtsJ-like methy 97.1 0.0012 2.6E-08 58.1 6.8 121 156-306 24-157 (181)
206 PRK01747 mnmC bifunctional tRN 97.1 0.0066 1.4E-07 64.2 13.1 147 156-313 58-223 (662)
207 KOG1975 mRNA cap methyltransfe 97.1 0.0021 4.6E-08 62.1 8.3 126 136-286 101-236 (389)
208 COG0357 GidB Predicted S-adeno 97.0 0.0041 8.9E-08 57.1 9.5 122 156-312 68-190 (215)
209 KOG3045 Predicted RNA methylas 97.0 0.004 8.6E-08 58.7 9.4 127 136-313 159-287 (325)
210 PF03291 Pox_MCEL: mRNA cappin 97.0 0.0013 2.7E-08 64.2 6.3 134 136-288 40-187 (331)
211 PF13679 Methyltransf_32: Meth 97.0 0.002 4.3E-08 54.8 6.7 57 145-201 11-71 (141)
212 PF01170 UPF0020: Putative RNA 96.9 0.0089 1.9E-07 53.0 10.6 123 144-289 17-153 (179)
213 COG3963 Phospholipid N-methylt 96.9 0.007 1.5E-07 53.6 9.5 105 155-290 48-159 (194)
214 TIGR03439 methyl_EasF probable 96.9 0.011 2.4E-07 57.4 11.3 121 150-291 70-202 (319)
215 COG1041 Predicted DNA modifica 96.8 0.0045 9.8E-08 60.4 8.4 138 142-319 184-332 (347)
216 PRK10611 chemotaxis methyltran 96.8 0.0056 1.2E-07 58.6 8.8 129 155-287 115-262 (287)
217 KOG2730 Methylase [General fun 96.8 0.0029 6.2E-08 58.2 6.3 102 155-284 94-199 (263)
218 COG0030 KsgA Dimethyladenosine 96.8 0.01 2.3E-07 55.9 10.0 97 145-275 17-117 (259)
219 PF01269 Fibrillarin: Fibrilla 96.8 0.0088 1.9E-07 55.2 9.1 101 156-285 74-176 (229)
220 KOG3191 Predicted N6-DNA-methy 96.7 0.049 1.1E-06 49.0 13.1 44 155-201 43-86 (209)
221 PF05891 Methyltransf_PK: AdoM 96.7 0.0023 4.9E-08 58.8 4.9 141 144-314 39-198 (218)
222 PF12692 Methyltransf_17: S-ad 96.7 0.012 2.7E-07 50.9 9.0 115 142-290 13-137 (160)
223 COG0500 SmtA SAM-dependent met 96.6 0.024 5.1E-07 44.2 9.3 105 159-290 52-158 (257)
224 COG4262 Predicted spermidine s 96.5 0.023 5.1E-07 56.0 10.8 115 155-289 289-409 (508)
225 COG1352 CheR Methylase of chem 96.5 0.0048 1E-07 58.5 6.0 142 145-287 84-241 (268)
226 PF05958 tRNA_U5-meth_tr: tRNA 96.5 0.004 8.7E-08 61.1 5.5 129 145-313 184-329 (352)
227 COG2265 TrmA SAM-dependent met 96.4 0.024 5.3E-07 57.3 10.4 100 155-285 293-394 (432)
228 PRK10742 putative methyltransf 96.2 0.016 3.5E-07 54.3 7.5 107 144-275 75-192 (250)
229 TIGR01444 fkbM_fam methyltrans 96.2 0.0047 1E-07 51.7 3.4 41 158-202 1-41 (143)
230 KOG3420 Predicted RNA methylas 96.1 0.008 1.7E-07 52.2 4.6 85 145-259 35-122 (185)
231 PRK11760 putative 23S rRNA C24 96.1 0.073 1.6E-06 52.2 11.6 110 155-304 211-323 (357)
232 PF02384 N6_Mtase: N-6 DNA Met 96.0 0.018 3.9E-07 54.9 6.9 118 145-283 36-179 (311)
233 COG0293 FtsJ 23S rRNA methylas 95.9 0.056 1.2E-06 49.3 9.4 103 156-290 46-162 (205)
234 PRK11783 rlmL 23S rRNA m(2)G24 95.7 0.051 1.1E-06 58.1 9.7 81 156-258 191-310 (702)
235 PF05219 DREV: DREV methyltran 95.6 0.062 1.3E-06 50.7 8.6 94 155-290 94-191 (265)
236 PF09243 Rsm22: Mitochondrial 95.6 0.063 1.4E-06 50.9 8.8 56 144-202 19-77 (274)
237 PF03141 Methyltransf_29: Puta 95.6 0.042 9.2E-07 56.0 7.8 121 154-314 364-488 (506)
238 COG1189 Predicted rRNA methyla 95.4 0.12 2.6E-06 48.2 9.5 126 154-313 78-220 (245)
239 KOG1122 tRNA and rRNA cytosine 95.4 0.16 3.4E-06 51.0 10.8 135 156-319 242-402 (460)
240 KOG0820 Ribosomal RNA adenine 95.2 0.066 1.4E-06 50.9 7.4 41 155-201 58-98 (315)
241 PF02005 TRM: N2,N2-dimethylgu 95.1 0.062 1.3E-06 53.4 7.4 107 155-289 49-156 (377)
242 COG4076 Predicted RNA methylas 95.0 0.038 8.1E-07 50.0 4.8 112 146-289 23-137 (252)
243 COG2384 Predicted SAM-dependen 94.9 0.66 1.4E-05 42.8 12.7 122 157-313 18-139 (226)
244 PF05430 Methyltransf_30: S-ad 94.7 0.085 1.8E-06 44.3 6.0 72 233-313 32-107 (124)
245 PF07942 N2227: N2227-like pro 94.4 0.07 1.5E-06 50.7 5.4 147 156-314 57-239 (270)
246 KOG1562 Spermidine synthase [A 94.3 0.13 2.8E-06 49.4 6.8 117 151-290 117-240 (337)
247 COG1064 AdhP Zn-dependent alco 94.2 0.11 2.5E-06 50.8 6.5 94 156-289 167-261 (339)
248 KOG2187 tRNA uracil-5-methyltr 93.7 0.089 1.9E-06 53.8 4.9 87 144-259 368-463 (534)
249 PHA01634 hypothetical protein 93.5 0.16 3.5E-06 43.2 5.3 43 154-201 27-69 (156)
250 PF04672 Methyltransf_19: S-ad 93.5 0.79 1.7E-05 43.5 10.5 137 148-311 61-213 (267)
251 TIGR02987 met_A_Alw26 type II 93.4 0.33 7.1E-06 50.0 8.6 46 156-201 32-81 (524)
252 PF00398 RrnaAD: Ribosomal RNA 93.4 0.15 3.2E-06 47.9 5.4 100 146-279 18-123 (262)
253 KOG1269 SAM-dependent methyltr 93.4 0.089 1.9E-06 52.1 4.1 108 155-290 110-218 (364)
254 COG1889 NOP1 Fibrillarin-like 93.3 0.68 1.5E-05 42.4 9.3 99 155-283 76-176 (231)
255 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.1 0.097 2.1E-06 49.4 3.8 154 155-316 56-238 (256)
256 PF01861 DUF43: Protein of unk 92.9 1.4 3E-05 41.3 11.0 132 154-314 43-175 (243)
257 KOG1253 tRNA methyltransferase 92.5 0.082 1.8E-06 53.9 2.5 115 146-288 100-217 (525)
258 COG3897 Predicted methyltransf 92.5 0.18 4E-06 45.8 4.4 36 154-194 78-113 (218)
259 PRK13699 putative methylase; P 91.8 0.64 1.4E-05 42.9 7.4 73 234-313 2-92 (227)
260 KOG1501 Arginine N-methyltrans 91.5 0.19 4.1E-06 50.8 3.7 40 158-202 69-108 (636)
261 KOG2793 Putative N2,N2-dimethy 91.4 1 2.2E-05 42.3 8.3 116 155-290 86-202 (248)
262 TIGR00006 S-adenosyl-methyltra 91.2 0.76 1.6E-05 44.5 7.4 43 155-201 20-62 (305)
263 KOG3178 Hydroxyindole-O-methyl 90.8 0.87 1.9E-05 44.6 7.5 98 156-290 178-278 (342)
264 KOG2940 Predicted methyltransf 90.7 0.25 5.3E-06 46.2 3.4 100 156-286 73-173 (325)
265 COG4798 Predicted methyltransf 90.7 0.63 1.4E-05 42.4 5.9 36 156-194 49-84 (238)
266 PF04445 SAM_MT: Putative SAM- 90.7 0.27 5.8E-06 45.8 3.7 83 158-262 78-162 (234)
267 KOG1098 Putative SAM-dependent 90.2 1.3 2.8E-05 46.6 8.4 120 155-305 44-175 (780)
268 PF03721 UDPG_MGDP_dh_N: UDP-g 89.4 4 8.8E-05 36.3 10.2 129 158-309 2-139 (185)
269 PF02636 Methyltransf_28: Puta 88.8 0.95 2.1E-05 42.0 5.9 47 156-202 19-69 (252)
270 COG1063 Tdh Threonine dehydrog 88.6 2.1 4.5E-05 41.8 8.4 100 156-290 169-272 (350)
271 COG5459 Predicted rRNA methyla 88.5 0.9 1.9E-05 44.9 5.6 57 250-306 184-244 (484)
272 PLN02353 probable UDP-glucose 88.2 5.7 0.00012 40.8 11.5 128 158-307 3-143 (473)
273 PRK09424 pntA NAD(P) transhydr 88.1 1.9 4.1E-05 44.6 8.0 118 154-288 163-286 (509)
274 KOG4589 Cell division protein 88.1 6.4 0.00014 35.9 10.2 106 156-290 70-187 (232)
275 PF00107 ADH_zinc_N: Zinc-bind 87.5 0.91 2E-05 36.9 4.4 89 166-290 2-92 (130)
276 KOG1331 Predicted methyltransf 86.8 0.57 1.2E-05 44.8 3.1 111 135-286 28-142 (293)
277 KOG3115 Methyltransferase-like 86.7 1.2 2.6E-05 40.9 5.0 41 156-200 61-101 (249)
278 PF05971 Methyltransf_10: Prot 86.5 2.4 5.1E-05 41.0 7.2 75 157-259 104-185 (299)
279 COG1867 TRM1 N2,N2-dimethylgua 86.0 4.1 8.9E-05 40.4 8.6 105 156-290 53-157 (380)
280 KOG2352 Predicted spermine/spe 85.5 2.9 6.2E-05 42.8 7.5 110 156-292 296-421 (482)
281 COG0116 Predicted N6-adenine-s 85.3 1.8 3.8E-05 43.2 5.8 80 156-258 192-306 (381)
282 PRK11524 putative methyltransf 85.2 1.6 3.5E-05 41.3 5.4 53 234-286 9-79 (284)
283 KOG0822 Protein kinase inhibit 84.8 2.7 5.8E-05 43.6 6.9 120 145-290 351-481 (649)
284 COG4121 Uncharacterized conser 84.7 6.6 0.00014 37.0 9.0 147 155-314 58-226 (252)
285 cd08283 FDH_like_1 Glutathione 84.5 5.7 0.00012 38.9 9.0 44 154-201 183-227 (386)
286 PF11968 DUF3321: Putative met 84.2 1.2 2.6E-05 41.1 3.8 113 157-313 53-177 (219)
287 TIGR01627 A_thal_3515 uncharac 83.6 17 0.00037 33.5 10.9 137 145-290 29-186 (225)
288 KOG2798 Putative trehalase [Ca 81.8 0.99 2.2E-05 43.9 2.3 63 250-315 258-335 (369)
289 PF08351 DUF1726: Domain of un 81.4 1.4 3E-05 35.0 2.8 37 248-286 8-44 (92)
290 PF01795 Methyltransf_5: MraW 81.2 3.3 7.2E-05 40.2 5.7 52 145-201 11-62 (310)
291 PRK09880 L-idonate 5-dehydroge 81.1 7.5 0.00016 37.2 8.3 99 155-288 169-267 (343)
292 KOG3201 Uncharacterized conser 80.8 3 6.5E-05 37.1 4.8 124 139-285 10-138 (201)
293 PF01555 N6_N4_Mtase: DNA meth 80.6 2.1 4.6E-05 37.8 4.0 51 144-200 178-230 (231)
294 COG1565 Uncharacterized conser 80.3 3.1 6.7E-05 41.2 5.2 46 156-201 78-127 (370)
295 PF07091 FmrO: Ribosomal RNA m 78.9 1.6 3.4E-05 41.1 2.6 53 145-201 94-147 (251)
296 KOG2651 rRNA adenine N-6-methy 78.9 3.8 8.3E-05 40.9 5.4 51 146-201 144-194 (476)
297 COG4301 Uncharacterized conser 78.8 28 0.0006 33.2 10.7 120 148-290 71-197 (321)
298 cd08237 ribitol-5-phosphate_DH 78.5 13 0.00028 35.7 9.0 93 156-287 164-256 (341)
299 TIGR01007 eps_fam capsular exo 78.1 48 0.001 29.2 12.2 59 247-311 123-181 (204)
300 COG1004 Ugd Predicted UDP-gluc 77.9 16 0.00034 36.8 9.3 122 158-303 2-132 (414)
301 COG0275 Predicted S-adenosylme 77.8 12 0.00027 36.2 8.4 45 155-202 23-67 (314)
302 KOG2198 tRNA cytosine-5-methyl 77.7 23 0.00051 35.2 10.4 138 155-310 155-321 (375)
303 PF11599 AviRa: RRNA methyltra 77.2 12 0.00025 34.9 7.6 130 155-290 51-217 (246)
304 PF05206 TRM13: Methyltransfer 76.8 6.3 0.00014 37.3 6.0 51 143-193 3-57 (259)
305 PRK15182 Vi polysaccharide bio 76.6 16 0.00035 36.9 9.3 127 155-310 5-141 (425)
306 COG0287 TyrA Prephenate dehydr 75.6 8.5 0.00018 36.7 6.7 40 157-198 4-43 (279)
307 TIGR03029 EpsG chain length de 74.8 25 0.00054 32.7 9.6 61 246-312 207-267 (274)
308 cd08254 hydroxyacyl_CoA_DH 6-h 74.7 17 0.00036 34.1 8.4 97 155-287 165-263 (338)
309 TIGR03451 mycoS_dep_FDH mycoth 74.5 17 0.00037 34.9 8.7 99 155-287 176-276 (358)
310 PRK11524 putative methyltransf 73.9 4.8 0.0001 38.1 4.5 53 144-202 195-249 (284)
311 KOG1596 Fibrillarin and relate 73.4 8.5 0.00018 36.4 5.8 100 156-284 157-258 (317)
312 PF10237 N6-adenineMlase: Prob 73.0 39 0.00084 29.7 9.7 94 155-285 25-121 (162)
313 cd02037 MRP-like MRP (Multiple 72.5 30 0.00065 29.6 8.9 53 250-306 66-118 (169)
314 PF02153 PDH: Prephenate dehyd 71.8 6.2 0.00013 36.8 4.7 28 173-200 1-28 (258)
315 PF03686 UPF0146: Uncharacteri 71.6 12 0.00026 31.7 5.8 43 146-194 4-47 (127)
316 PRK11064 wecC UDP-N-acetyl-D-m 71.5 34 0.00074 34.3 10.2 125 157-308 4-136 (415)
317 cd05188 MDR Medium chain reduc 71.3 29 0.00062 30.9 8.8 99 154-288 133-233 (271)
318 TIGR00561 pntA NAD(P) transhyd 71.1 13 0.00027 38.7 7.1 43 155-201 163-205 (511)
319 COG0541 Ffh Signal recognition 70.5 8.9 0.00019 38.9 5.6 136 156-309 100-243 (451)
320 PRK04296 thymidine kinase; Pro 69.8 13 0.00028 32.9 6.1 32 158-189 4-36 (190)
321 KOG0780 Signal recognition par 69.5 36 0.00079 34.4 9.5 110 156-290 101-225 (483)
322 cd00401 AdoHcyase S-adenosyl-L 69.2 36 0.00079 34.4 9.7 51 146-200 188-242 (413)
323 PF05050 Methyltransf_21: Meth 68.8 4 8.6E-05 34.2 2.5 39 161-201 1-41 (167)
324 cd00315 Cyt_C5_DNA_methylase C 68.1 56 0.0012 30.8 10.3 39 158-201 2-40 (275)
325 COG1255 Uncharacterized protei 67.8 11 0.00024 31.6 4.7 43 147-194 5-47 (129)
326 PLN03154 putative allyl alcoho 67.6 32 0.00068 33.2 8.8 95 155-285 158-256 (348)
327 cd03115 SRP The signal recogni 67.6 78 0.0017 27.0 10.7 58 249-309 80-140 (173)
328 cd08281 liver_ADH_like1 Zinc-d 65.9 28 0.0006 33.7 8.1 98 156-287 192-290 (371)
329 cd08294 leukotriene_B4_DH_like 65.2 50 0.0011 30.8 9.5 94 155-285 143-239 (329)
330 TIGR03018 pepcterm_TyrKin exop 65.2 40 0.00087 30.0 8.4 51 250-305 145-197 (207)
331 COG2109 BtuR ATP:corrinoid ade 65.1 76 0.0017 28.9 9.9 41 155-195 28-68 (198)
332 KOG0024 Sorbitol dehydrogenase 64.5 28 0.00061 34.2 7.5 100 156-290 170-276 (354)
333 PRK10309 galactitol-1-phosphat 64.2 36 0.00078 32.4 8.4 34 250-287 227-260 (347)
334 PRK13512 coenzyme A disulfide 64.1 56 0.0012 32.7 10.0 39 152-194 144-182 (438)
335 PRK15001 SAM-dependent 23S rib 64.0 19 0.00041 35.9 6.5 117 136-287 24-142 (378)
336 cd08293 PTGR2 Prostaglandin re 62.8 53 0.0011 31.0 9.2 93 157-285 156-252 (345)
337 TIGR02717 AcCoA-syn-alpha acet 62.7 95 0.0021 31.5 11.4 118 153-313 4-125 (447)
338 PF02254 TrkA_N: TrkA-N domain 62.4 15 0.00033 29.1 4.7 89 164-286 4-95 (116)
339 PF02826 2-Hacid_dh_C: D-isome 61.9 24 0.00052 30.8 6.2 39 153-195 33-71 (178)
340 PRK15057 UDP-glucose 6-dehydro 60.8 55 0.0012 32.6 9.2 124 159-309 3-135 (388)
341 PRK13699 putative methylase; P 60.2 14 0.0003 34.0 4.5 51 145-201 151-203 (227)
342 TIGR02825 B4_12hDH leukotriene 60.1 72 0.0016 29.9 9.6 94 155-285 138-235 (325)
343 PRK07502 cyclohexadienyl dehyd 59.9 31 0.00066 32.8 7.0 39 157-197 7-45 (307)
344 KOG1099 SAM-dependent methyltr 59.1 21 0.00046 33.6 5.4 102 156-286 42-162 (294)
345 PRK09841 cryptic autophosphory 58.4 72 0.0016 34.4 10.2 59 248-312 637-695 (726)
346 KOG0257 Kynurenine aminotransf 58.3 1.9E+02 0.0041 29.3 12.2 106 157-288 95-212 (420)
347 PRK05225 ketol-acid reductoiso 58.1 42 0.00091 34.6 7.8 38 251-290 97-134 (487)
348 TIGR01005 eps_transp_fam exopo 57.1 78 0.0017 34.1 10.2 57 245-306 649-705 (754)
349 PF01041 DegT_DnrJ_EryC1: DegT 56.8 1.7E+02 0.0038 28.3 11.8 46 144-191 28-73 (363)
350 PLN02494 adenosylhomocysteinas 56.4 91 0.002 32.2 9.9 46 146-195 240-289 (477)
351 PTZ00357 methyltransferase; Pr 56.4 36 0.00077 37.0 7.1 109 158-282 703-830 (1072)
352 TIGR03201 dearomat_had 6-hydro 56.2 39 0.00085 32.3 7.1 43 155-201 166-208 (349)
353 TIGR01202 bchC 2-desacetyl-2-h 56.2 40 0.00086 31.8 7.1 32 250-286 199-230 (308)
354 PF14740 DUF4471: Domain of un 55.9 20 0.00044 34.4 5.0 75 234-313 202-285 (289)
355 PRK13403 ketol-acid reductoiso 55.6 1.3E+02 0.0028 29.7 10.4 96 153-290 13-109 (335)
356 PLN02827 Alcohol dehydrogenase 55.5 65 0.0014 31.5 8.6 97 155-285 193-293 (378)
357 KOG1227 Putative methyltransfe 55.5 14 0.0003 36.0 3.7 123 155-309 194-324 (351)
358 cd08295 double_bond_reductase_ 54.9 85 0.0018 29.7 9.2 95 155-285 151-249 (338)
359 PLN02586 probable cinnamyl alc 54.7 1.4E+02 0.003 28.9 10.7 31 251-286 247-277 (360)
360 cd01492 Aos1_SUMO Ubiquitin ac 54.2 1.1E+02 0.0023 27.5 9.1 49 136-193 7-55 (197)
361 TIGR00936 ahcY adenosylhomocys 54.2 1.3E+02 0.0029 30.3 10.6 37 154-194 193-229 (406)
362 PF07015 VirC1: VirC1 protein; 54.0 27 0.00059 32.5 5.3 32 165-196 12-43 (231)
363 cd08239 THR_DH_like L-threonin 53.7 55 0.0012 30.9 7.6 96 155-286 163-261 (339)
364 cd08230 glucose_DH Glucose deh 52.9 49 0.0011 31.7 7.2 33 250-287 237-269 (355)
365 PF00448 SRP54: SRP54-type pro 52.5 96 0.0021 27.7 8.5 58 250-310 82-142 (196)
366 cd08243 quinone_oxidoreductase 52.3 1.1E+02 0.0023 28.1 9.2 93 155-285 142-236 (320)
367 TIGR02764 spore_ybaN_pdaB poly 51.8 49 0.0011 28.9 6.5 50 264-316 136-188 (191)
368 KOG1252 Cystathionine beta-syn 51.4 30 0.00066 34.1 5.3 42 154-195 210-251 (362)
369 cd08286 FDH_like_ADH2 formalde 51.2 90 0.0019 29.5 8.6 31 250-285 234-264 (345)
370 cd00757 ThiF_MoeB_HesA_family 51.0 1.3E+02 0.0029 27.2 9.4 38 153-193 18-55 (228)
371 TIGR03366 HpnZ_proposed putati 50.9 82 0.0018 29.1 8.2 33 250-287 186-218 (280)
372 KOG2978 Dolichol-phosphate man 50.5 1.6E+02 0.0036 27.0 9.4 39 249-290 88-128 (238)
373 PLN02740 Alcohol dehydrogenase 49.6 1.2E+02 0.0025 29.6 9.4 44 155-201 198-241 (381)
374 TIGR00518 alaDH alanine dehydr 49.2 54 0.0012 32.4 6.9 37 154-194 165-201 (370)
375 PRK08306 dipicolinate synthase 48.9 76 0.0016 30.3 7.7 36 155-194 151-186 (296)
376 PRK05476 S-adenosyl-L-homocyst 48.6 1.2E+02 0.0025 30.9 9.3 37 155-195 211-247 (425)
377 KOG3924 Putative protein methy 48.6 94 0.002 31.4 8.3 136 155-308 192-331 (419)
378 PF13709 DUF4159: Domain of un 48.4 29 0.00063 31.5 4.6 55 252-306 54-110 (207)
379 TIGR00064 ftsY signal recognit 47.6 2.5E+02 0.0054 26.5 11.7 54 250-306 153-215 (272)
380 cd05278 FDH_like Formaldehyde 47.4 1E+02 0.0022 29.0 8.4 31 250-285 235-265 (347)
381 TIGR01425 SRP54_euk signal rec 47.3 1.9E+02 0.0041 29.5 10.5 41 250-290 181-224 (429)
382 PRK11889 flhF flagellar biosyn 47.3 1.8E+02 0.0039 29.7 10.2 53 251-305 320-375 (436)
383 KOG0022 Alcohol dehydrogenase, 47.3 91 0.002 30.8 7.8 48 152-202 189-236 (375)
384 PRK12727 flagellar biosynthesi 47.2 3.5E+02 0.0076 28.6 12.6 38 156-193 350-390 (559)
385 PRK14045 1-aminocyclopropane-1 47.1 44 0.00095 32.3 5.8 36 158-193 186-221 (329)
386 PRK09489 rsmC 16S ribosomal RN 46.9 41 0.00089 33.0 5.6 54 250-307 75-128 (342)
387 PF02558 ApbA: Ketopantoate re 46.3 40 0.00087 28.0 4.8 38 249-288 65-103 (151)
388 cd08285 NADP_ADH NADP(H)-depen 45.8 1.1E+02 0.0024 29.1 8.3 100 155-288 166-267 (351)
389 cd03768 SR_ResInv Serine Recom 45.8 98 0.0021 24.8 7.0 70 251-320 26-95 (126)
390 TIGR02822 adh_fam_2 zinc-bindi 45.7 1.2E+02 0.0026 28.9 8.6 90 155-287 165-254 (329)
391 cd08301 alcohol_DH_plants Plan 45.3 1.3E+02 0.0028 29.0 8.8 45 154-201 186-230 (369)
392 TIGR03385 CoA_CoA_reduc CoA-di 45.3 2E+02 0.0043 28.4 10.4 38 153-194 134-171 (427)
393 PF01408 GFO_IDH_MocA: Oxidore 45.2 1.5E+02 0.0032 23.3 9.6 57 250-313 61-117 (120)
394 PF07757 AdoMet_MTase: Predict 45.2 31 0.00068 28.5 3.7 30 156-191 59-88 (112)
395 PRK10867 signal recognition pa 44.9 2.7E+02 0.0059 28.3 11.3 40 250-289 182-224 (433)
396 cd08238 sorbose_phosphate_red 44.6 90 0.0019 30.8 7.7 43 156-201 176-221 (410)
397 cd08261 Zn_ADH7 Alcohol dehydr 43.9 1.3E+02 0.0027 28.4 8.4 38 154-196 158-196 (337)
398 KOG2671 Putative RNA methylase 43.7 51 0.0011 32.8 5.6 45 146-196 199-243 (421)
399 PRK05703 flhF flagellar biosyn 43.2 2.3E+02 0.0051 28.6 10.5 38 157-194 222-262 (424)
400 COG0399 WecE Predicted pyridox 43.1 3.6E+02 0.0077 27.0 12.7 114 145-314 38-154 (374)
401 PRK12726 flagellar biosynthesi 42.4 1.1E+02 0.0024 30.9 7.9 35 250-284 284-321 (407)
402 PRK10083 putative oxidoreducta 42.3 1.4E+02 0.003 28.1 8.4 43 155-200 160-203 (339)
403 COG0604 Qor NADPH:quinone redu 42.2 1.5E+02 0.0033 28.6 8.8 96 156-288 143-242 (326)
404 COG0552 FtsY Signal recognitio 42.1 2E+02 0.0043 28.5 9.3 111 154-290 137-269 (340)
405 COG1062 AdhC Zn-dependent alco 41.7 1E+02 0.0022 30.6 7.3 55 144-203 175-230 (366)
406 PRK05690 molybdopterin biosynt 41.3 2.9E+02 0.0063 25.5 10.6 38 153-193 29-66 (245)
407 PRK11519 tyrosine kinase; Prov 41.1 2E+02 0.0044 31.0 10.3 59 248-312 632-690 (719)
408 KOG0023 Alcohol dehydrogenase, 40.6 1E+02 0.0022 30.5 7.1 33 157-194 183-216 (360)
409 KOG3987 Uncharacterized conser 40.6 3.3 7.1E-05 38.3 -2.9 36 156-197 113-148 (288)
410 PLN02668 indole-3-acetate carb 40.2 30 0.00064 34.7 3.5 20 156-175 64-83 (386)
411 PF12242 Eno-Rase_NADH_b: NAD( 40.1 89 0.0019 24.2 5.3 36 154-192 37-73 (78)
412 KOG2920 Predicted methyltransf 40.0 40 0.00087 32.3 4.2 56 136-196 91-152 (282)
413 PHA02518 ParA-like protein; Pr 40.0 1.1E+02 0.0023 26.6 6.8 31 163-195 11-41 (211)
414 PRK05939 hypothetical protein; 39.9 3.2E+02 0.007 27.1 10.9 41 249-289 129-170 (397)
415 PRK00299 sulfur transfer prote 39.4 1.7E+02 0.0037 22.3 7.8 62 256-322 11-76 (81)
416 PRK09422 ethanol-active dehydr 39.4 2E+02 0.0043 26.9 8.9 30 251-285 230-259 (338)
417 PTZ00075 Adenosylhomocysteinas 39.3 1.3E+02 0.0029 31.0 8.1 37 154-194 252-288 (476)
418 PF06612 DUF1146: Protein of u 39.3 16 0.00034 25.6 1.0 21 24-44 24-44 (48)
419 COG1362 LAP4 Aspartyl aminopep 39.1 70 0.0015 32.5 5.9 66 246-314 306-375 (437)
420 PRK06141 ornithine cyclodeamin 39.0 1.9E+02 0.0041 27.7 8.8 40 153-194 122-161 (314)
421 cd00338 Ser_Recombinase Serine 38.8 1.6E+02 0.0035 23.7 7.3 66 251-316 33-102 (137)
422 PF04378 RsmJ: Ribosomal RNA s 38.2 1.7E+02 0.0036 27.5 8.0 114 162-307 62-182 (245)
423 PRK05808 3-hydroxybutyryl-CoA 38.1 2E+02 0.0043 26.8 8.7 38 158-199 5-42 (282)
424 PRK06731 flhF flagellar biosyn 38.1 2E+02 0.0044 27.2 8.7 38 250-287 153-193 (270)
425 KOG1209 1-Acyl dihydroxyaceton 38.0 3.5E+02 0.0076 25.5 10.2 37 155-193 6-42 (289)
426 PLN02970 serine racemase 37.9 73 0.0016 30.8 5.8 37 158-194 177-213 (328)
427 TIGR00027 mthyl_TIGR00027 meth 37.7 1.1E+02 0.0024 28.7 6.8 39 252-290 159-200 (260)
428 cd08300 alcohol_DH_class_III c 37.7 2.3E+02 0.005 27.3 9.3 43 155-200 186-228 (368)
429 PRK13243 glyoxylate reductase; 37.4 1.8E+02 0.0039 28.2 8.4 38 153-194 147-184 (333)
430 PRK06382 threonine dehydratase 37.3 73 0.0016 31.8 5.8 49 146-194 163-211 (406)
431 TIGR02884 spore_pdaA delta-lac 36.7 1.2E+02 0.0025 27.6 6.7 49 266-316 173-221 (224)
432 PF01210 NAD_Gly3P_dh_N: NAD-d 36.3 1.3E+02 0.0029 25.5 6.6 123 158-309 1-126 (157)
433 PRK11761 cysM cysteine synthas 36.3 81 0.0018 30.0 5.7 37 158-194 169-205 (296)
434 PRK05600 thiamine biosynthesis 36.2 68 0.0015 31.8 5.3 49 136-193 27-75 (370)
435 cd05213 NAD_bind_Glutamyl_tRNA 36.0 3.5E+02 0.0076 25.8 10.1 38 154-194 176-213 (311)
436 COG2813 RsmC 16S RNA G1207 met 35.9 92 0.002 30.2 6.0 56 250-309 36-91 (300)
437 COG5379 BtaA S-adenosylmethion 35.7 32 0.00069 33.6 2.8 38 155-198 63-100 (414)
438 PRK01294 lipase chaperone; Pro 35.5 99 0.0021 30.4 6.3 27 81-109 66-92 (336)
439 TIGR01138 cysM cysteine syntha 35.4 92 0.002 29.5 6.0 37 158-194 165-201 (290)
440 PRK06815 hypothetical protein; 35.2 85 0.0018 30.1 5.8 48 146-193 158-205 (317)
441 TIGR01127 ilvA_1Cterm threonin 34.9 83 0.0018 30.9 5.7 47 148-194 140-186 (380)
442 cd03420 SirA_RHOD_Pry_redox Si 34.8 1.8E+02 0.0039 21.2 7.2 52 266-322 12-66 (69)
443 cd08232 idonate-5-DH L-idonate 34.8 2.1E+02 0.0046 26.7 8.4 31 250-285 230-260 (339)
444 PLN02545 3-hydroxybutyryl-CoA 34.7 2.2E+02 0.0048 26.6 8.5 39 157-199 5-43 (295)
445 COG0286 HsdM Type I restrictio 34.6 92 0.002 32.1 6.2 56 146-201 174-232 (489)
446 PF12048 DUF3530: Protein of u 34.5 64 0.0014 31.1 4.7 41 273-313 81-121 (310)
447 KOG2539 Mitochondrial/chloropl 34.5 2.1E+02 0.0045 29.6 8.4 127 154-304 199-332 (491)
448 COG0771 MurD UDP-N-acetylmuram 34.5 3.9E+02 0.0084 27.4 10.5 123 156-314 7-141 (448)
449 PRK08223 hypothetical protein; 34.4 3E+02 0.0065 26.5 9.2 36 153-193 24-61 (287)
450 cd05285 sorbitol_DH Sorbitol d 34.3 1.9E+02 0.0041 27.3 8.0 32 250-286 233-264 (343)
451 PRK06110 hypothetical protein; 34.3 66 0.0014 30.9 4.9 45 149-193 162-206 (322)
452 PRK07476 eutB threonine dehydr 34.3 93 0.002 29.9 5.9 49 146-194 157-205 (322)
453 PRK10669 putative cation:proto 34.3 1E+02 0.0022 32.1 6.5 39 157-199 418-456 (558)
454 PLN02178 cinnamyl-alcohol dehy 34.2 3.1E+02 0.0067 26.8 9.6 32 251-287 242-273 (375)
455 PLN03139 formate dehydrogenase 34.1 2.1E+02 0.0046 28.6 8.5 37 154-194 197-233 (386)
456 PF00070 Pyr_redox: Pyridine n 33.9 1.9E+02 0.0042 21.2 8.2 35 158-196 1-35 (80)
457 COG0031 CysK Cysteine synthase 33.9 57 0.0012 31.6 4.2 38 157-194 170-207 (300)
458 TIGR02818 adh_III_F_hyde S-(hy 33.6 2.7E+02 0.0059 26.8 9.1 44 155-201 185-228 (368)
459 PRK05993 short chain dehydroge 33.6 1.5E+02 0.0032 27.2 6.9 36 156-194 4-39 (277)
460 COG0079 HisC Histidinol-phosph 33.5 4.7E+02 0.01 25.6 12.0 119 146-290 62-187 (356)
461 PLN02356 phosphateglycerate ki 33.3 74 0.0016 32.3 5.1 36 157-192 251-286 (423)
462 cd08233 butanediol_DH_like (2R 33.3 2.8E+02 0.0061 26.2 9.0 32 251-287 241-272 (351)
463 PRK00771 signal recognition pa 33.2 5.4E+02 0.012 26.2 12.5 40 251-290 175-217 (437)
464 cd06449 ACCD Aminocyclopropane 33.1 83 0.0018 29.9 5.3 37 158-194 176-212 (307)
465 PRK07066 3-hydroxybutyryl-CoA 33.1 2.2E+02 0.0047 27.7 8.2 39 157-199 8-46 (321)
466 PRK08410 2-hydroxyacid dehydro 33.0 1.9E+02 0.0041 27.8 7.8 37 153-193 142-178 (311)
467 cd01562 Thr-dehyd Threonine de 33.0 1E+02 0.0022 28.9 5.8 47 148-194 157-203 (304)
468 COG1444 Predicted P-loop ATPas 33.0 40 0.00087 36.7 3.3 36 248-285 89-124 (758)
469 TIGR03026 NDP-sugDHase nucleot 32.9 5E+02 0.011 25.7 12.6 127 158-307 2-137 (411)
470 PRK07819 3-hydroxybutyryl-CoA 32.9 2E+02 0.0043 27.2 7.8 41 157-201 6-46 (286)
471 cd00640 Trp-synth-beta_II Tryp 32.9 1.1E+02 0.0024 27.7 5.9 35 157-191 154-188 (244)
472 PRK08507 prephenate dehydrogen 32.8 1.3E+02 0.0027 28.1 6.4 37 158-196 2-38 (275)
473 PRK07810 O-succinylhomoserine 32.8 2.7E+02 0.0058 27.7 9.0 119 145-290 74-195 (403)
474 PF11899 DUF3419: Protein of u 32.7 56 0.0012 32.7 4.1 50 139-195 20-69 (380)
475 KOG4058 Uncharacterized conser 32.6 1.7E+02 0.0037 25.9 6.5 48 146-199 64-111 (199)
476 PLN02256 arogenate dehydrogena 32.5 3.2E+02 0.0068 26.2 9.2 35 155-193 35-69 (304)
477 KOG0609 Calcium/calmodulin-dep 32.4 86 0.0019 32.7 5.4 91 105-199 352-446 (542)
478 PRK09260 3-hydroxybutyryl-CoA 32.3 1.7E+02 0.0036 27.4 7.2 40 157-200 2-41 (288)
479 cd08296 CAD_like Cinnamyl alco 32.2 2.3E+02 0.0051 26.6 8.2 95 155-285 163-257 (333)
480 PRK06234 methionine gamma-lyas 32.2 3.5E+02 0.0076 26.7 9.7 42 249-290 147-191 (400)
481 TIGR02991 ectoine_eutB ectoine 32.1 1.1E+02 0.0024 29.3 6.0 49 146-194 157-205 (317)
482 KOG1251 Serine racemase [Signa 31.8 1.8E+02 0.0039 27.9 6.9 52 143-194 160-211 (323)
483 TIGR02356 adenyl_thiF thiazole 31.7 86 0.0019 28.0 4.9 47 138-193 9-55 (202)
484 TIGR03169 Nterm_to_SelD pyridi 31.7 3.4E+02 0.0073 25.9 9.3 130 144-297 133-274 (364)
485 cd03767 SR_Res_par Serine reco 31.5 2.2E+02 0.0047 24.0 7.1 66 252-317 32-98 (146)
486 PRK12480 D-lactate dehydrogena 31.3 2E+02 0.0042 28.0 7.6 38 153-194 143-180 (330)
487 PRK08010 pyridine nucleotide-d 31.3 1.4E+02 0.0029 29.8 6.7 36 155-194 157-192 (441)
488 PF14597 Lactamase_B_5: Metall 31.2 58 0.0013 29.5 3.5 48 275-323 139-186 (199)
489 cd08245 CAD Cinnamyl alcohol d 31.1 3.7E+02 0.0079 25.0 9.3 38 155-197 162-200 (330)
490 PLN02556 cysteine synthase/L-3 31.0 1.2E+02 0.0027 29.9 6.2 38 157-194 217-254 (368)
491 PLN02565 cysteine synthase 30.9 1.3E+02 0.0029 29.0 6.4 38 157-194 173-210 (322)
492 PRK03814 oxaloacetate decarbox 30.7 54 0.0012 25.7 2.9 23 26-48 20-42 (85)
493 COG0677 WecC UDP-N-acetyl-D-ma 30.7 2.5E+02 0.0055 28.5 8.2 132 157-312 10-151 (436)
494 PRK07574 formate dehydrogenase 30.6 2.8E+02 0.0061 27.7 8.7 37 154-194 190-226 (385)
495 PRK06608 threonine dehydratase 30.5 1.2E+02 0.0025 29.6 5.9 47 148-194 162-209 (338)
496 cd05286 QOR2 Quinone oxidoredu 30.5 3.5E+02 0.0076 24.3 8.9 37 154-195 135-173 (320)
497 PF03446 NAD_binding_2: NAD bi 30.4 3.4E+02 0.0074 23.0 9.1 111 158-312 3-115 (163)
498 COG3315 O-Methyltransferase in 30.3 1.7E+02 0.0037 28.1 6.9 110 156-287 93-209 (297)
499 PRK08198 threonine dehydratase 30.3 1.1E+02 0.0024 30.3 5.8 47 148-194 162-208 (404)
500 cd08236 sugar_DH NAD(P)-depend 30.2 2.1E+02 0.0045 26.8 7.5 36 155-195 159-196 (343)
No 1
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.91 E-value=7.6e-24 Score=193.13 Aligned_cols=152 Identities=26% Similarity=0.302 Sum_probs=128.4
Q ss_pred chHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 141 ~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
+++|++|..|++..++++||||||+.||||+|||.+ ++.++++++||.++++.+.|++
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~---l~~~g~l~tiE~~~e~~~~A~~------------------- 102 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALA---LPDDGRLTTIERDEERAEIARE------------------- 102 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhh---CCCCCeEEEEeCCHHHHHHHHH-------------------
Confidence 488999999999999999999999999999999996 6668999999999999999887
Q ss_pred HHhhhccCCcccceEeee-cchhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC----C-
Q 041517 221 NVIYQNAIDSVLPVPFSS-GSALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA----D- 293 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~-gda~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~----~- 293 (327)
|+..+|..++ |.+.. |++.+.|.. ..++|||||||+++..++ .+++.++++|+|||+|++||+.+.. .
T Consensus 103 n~~~ag~~~~---i~~~~~gdal~~l~~~~~~~fDliFIDadK~~yp--~~le~~~~lLr~GGliv~DNvl~~G~v~~~~ 177 (219)
T COG4122 103 NLAEAGVDDR---IELLLGGDALDVLSRLLDGSFDLVFIDADKADYP--EYLERALPLLRPGGLIVADNVLFGGRVADPS 177 (219)
T ss_pred HHHHcCCcce---EEEEecCcHHHHHHhccCCCccEEEEeCChhhCH--HHHHHHHHHhCCCcEEEEeecccCCccCCcc
Confidence 6667788777 66666 699999986 579999999999998888 9999999999999999999999942 1
Q ss_pred -------chhHHHHHHHHHHHcCCe--EEEccceE
Q 041517 294 -------NRGVRRAVNLFAKINGLK--VQIDGQHW 319 (327)
Q Consensus 294 -------~~GV~~Av~~f~~~~gl~--v~~~gq~w 319 (327)
..+++++.+...++++++ +.+.|...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl 212 (219)
T COG4122 178 IRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGL 212 (219)
T ss_pred chhHHHHHHHHHHHHHHHhhCcCceeEEEecCCce
Confidence 123677777777777776 35544433
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.91 E-value=7.9e-24 Score=196.91 Aligned_cols=164 Identities=20% Similarity=0.148 Sum_probs=130.0
Q ss_pred CCCCcCCCccccccccC-cCCCChHHHHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcCCCEE
Q 041517 81 LPPSLLDNFRVTTRCAA-DSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVI 159 (327)
Q Consensus 81 ~~~~~~d~~~~~~~~~~-~~~~~~~v~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~V 159 (327)
..|..+++|. ... ...+.+.+++.+.+..- -...|...+. .++++||..|++..+|++|
T Consensus 24 ~~~~~i~~Y~----~~~~~~~~~~~~L~~l~~~a~-----~~~~~~~~~~-----------~~~g~lL~~l~~~~~ak~i 83 (247)
T PLN02589 24 LQSDALYQYI----LETSVYPREPESMKELRELTA-----KHPWNIMTTS-----------ADEGQFLNMLLKLINAKNT 83 (247)
T ss_pred cCcHHHHHHH----HHhccCCCCCHHHHHHHHHHH-----hcCCCCCccC-----------HHHHHHHHHHHHHhCCCEE
Confidence 5578888888 220 23355566666655321 1122322222 2679999999999999999
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
|||||++||||++||++ ++++++|++||.++++.+.|++ ++..+|+.++ |++..|
T Consensus 84 LEiGT~~GySal~la~a---l~~~g~v~tiE~~~~~~~~Ar~-------------------~~~~ag~~~~---I~~~~G 138 (247)
T PLN02589 84 MEIGVYTGYSLLATALA---LPEDGKILAMDINRENYELGLP-------------------VIQKAGVAHK---IDFREG 138 (247)
T ss_pred EEEeChhhHHHHHHHhh---CCCCCEEEEEeCCHHHHHHHHH-------------------HHHHCCCCCc---eEEEec
Confidence 99999999999999996 6779999999999998888877 4555677667 999999
Q ss_pred chhhhhhhc------CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 240 SALTKLCEW------GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 240 da~~~L~~l------~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
++.+.|+.+ .++|||||||+++..+. .+++.++++|+|||+|++||+.|.
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~--~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDADKDNYI--NYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCCHHHhH--HHHHHHHHhcCCCeEEEEcCCCCC
Confidence 999999875 26999999999997665 999999999999999999999984
No 3
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.91 E-value=5.9e-24 Score=192.76 Aligned_cols=153 Identities=25% Similarity=0.313 Sum_probs=123.9
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
++|++|..|++..+|++||||||++||||++||++ ++++++|++||.++++.+.|++ +
T Consensus 32 ~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~---l~~~g~i~tiE~~~~~~~~A~~-------------------~ 89 (205)
T PF01596_consen 32 ETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEA---LPEDGKITTIEIDPERAEIARE-------------------N 89 (205)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHT---STTTSEEEEEESSHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHHhcCCceEEEeccccccHHHHHHHh---hcccceEEEecCcHHHHHHHHH-------------------H
Confidence 68999999999999999999999999999999995 6789999999999999988877 4
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC----
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA---- 292 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~---- 292 (327)
+..+|+.++ |++..|++.+.|+.+ .++|||||||+++..+. .+++.+.++|+|||+||+||+.|..
T Consensus 90 ~~~ag~~~~---I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~--~y~~~~~~ll~~ggvii~DN~l~~G~V~~ 164 (205)
T PF01596_consen 90 FRKAGLDDR---IEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYL--EYFEKALPLLRPGGVIIADNVLWRGSVAD 164 (205)
T ss_dssp HHHTTGGGG---EEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHH--HHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred HHhcCCCCc---EEEEEeccHhhHHHHHhccCCCceeEEEEcccccchh--hHHHHHhhhccCCeEEEEccccccceecC
Confidence 455666666 999999999988875 24899999999986544 8999999999999999999999821
Q ss_pred ---Cch---hHHHHHHHHHHHcCCe--EEEccceEEE
Q 041517 293 ---DNR---GVRRAVNLFAKINGLK--VQIDGQHWVI 321 (327)
Q Consensus 293 ---~~~---GV~~Av~~f~~~~gl~--v~~~gq~w~i 321 (327)
..+ .++++.+.+.+..+++ +.+.|..-.|
T Consensus 165 ~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l 201 (205)
T PF01596_consen 165 PDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTL 201 (205)
T ss_dssp TTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEE
T ss_pred ccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEE
Confidence 112 2566777777777765 5567766554
No 4
>PLN02476 O-methyltransferase
Probab=99.90 E-value=3.3e-23 Score=195.41 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=145.7
Q ss_pred CCCCCcCCCccccccccCcCCCChHHHHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcCCCEE
Q 041517 80 QLPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVI 159 (327)
Q Consensus 80 ~~~~~~~d~~~~~~~~~~~~~~~~~v~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~V 159 (327)
...+..+++|. -. ..+.+.+.+++.+.... . ..+...+. ++++++|..|++..++++|
T Consensus 65 ~~~~~~i~~Y~----~~--~~~~~~~L~~l~e~a~~--~---~~~~~~v~-----------~~~g~lL~~L~~~~~ak~V 122 (278)
T PLN02476 65 ISLTPRLYDYV----LS--NVREPKILRQLREETSK--M---RGSQMQVS-----------PDQAQLLAMLVQILGAERC 122 (278)
T ss_pred ccchHHHHHHH----Hh--cCCCCHHHHHHHHHHHh--c---cCCccccC-----------HHHHHHHHHHHHhcCCCeE
Confidence 35567777787 22 24566666666653211 1 11111222 3789999999999999999
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
|||||++|+||++||++ ++++++|+++|.++++.+.|++ |+..+|..++ |++..|
T Consensus 123 LEIGT~tGySal~lA~a---l~~~G~V~TiE~d~e~~~~Ar~-------------------n~~~aGl~~~---I~li~G 177 (278)
T PLN02476 123 IEVGVYTGYSSLAVALV---LPESGCLVACERDSNSLEVAKR-------------------YYELAGVSHK---VNVKHG 177 (278)
T ss_pred EEecCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---EEEEEc
Confidence 99999999999999996 6778999999999999988877 5556677666 999999
Q ss_pred chhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCc----------hhHHHHHHHH
Q 041517 240 SALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN----------RGVRRAVNLF 304 (327)
Q Consensus 240 da~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~----------~GV~~Av~~f 304 (327)
++.+.|+.+ .++||+||||+++..+ ..+++.++++|+|||+|++||+.|...+ .+++++.+.+
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y--~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v 255 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVDADKRMY--QDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKL 255 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEECCCHHHH--HHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHH
Confidence 999998775 3689999999998554 4899999999999999999999994322 2356666667
Q ss_pred HHHcCCe--EEEccceEEE
Q 041517 305 AKINGLK--VQIDGQHWVI 321 (327)
Q Consensus 305 ~~~~gl~--v~~~gq~w~i 321 (327)
.++.++. +.+.|..-.|
T Consensus 256 ~~d~~~~~~llPigDGl~i 274 (278)
T PLN02476 256 MDDKRVSISMVPIGDGMTI 274 (278)
T ss_pred hhCCCEEEEEEEeCCeeEE
Confidence 7777765 5566655444
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.87 E-value=1.7e-21 Score=180.01 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=125.9
Q ss_pred CCCCcCCCccccccccCcCCCChHHHHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcCCCEEE
Q 041517 81 LPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVII 160 (327)
Q Consensus 81 ~~~~~~d~~~~~~~~~~~~~~~~~v~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~VL 160 (327)
..|..++.|... +. ...+.+...+.+.+... ..+...+...+. .+++++|..|++..++++||
T Consensus 11 ~~~~~~~~y~~~--~~-~~~~~~~~l~~~~~~a~---~~~~~~~~~~v~-----------~~~g~~L~~l~~~~~~~~vL 73 (234)
T PLN02781 11 LKSEALKQYIME--TS-AYPREHELLKELREATV---QKYGNLSEMEVP-----------VDEGLFLSMLVKIMNAKNTL 73 (234)
T ss_pred CCcHHHHHHHHH--hc-cCCCCCHHHHHHHHHHH---hccccCcccccC-----------HHHHHHHHHHHHHhCCCEEE
Confidence 445678888711 11 23456666666655321 111111212222 26789999999999999999
Q ss_pred EEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecc
Q 041517 161 EVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGS 240 (327)
Q Consensus 161 EIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gd 240 (327)
|||||+|+|+++||++ ++++++|+++|.++++.+.|++ |+...|+.++ |++..|+
T Consensus 74 EiGt~~G~s~l~la~~---~~~~g~v~tiD~d~~~~~~A~~-------------------n~~~~gl~~~---i~~~~gd 128 (234)
T PLN02781 74 EIGVFTGYSLLTTALA---LPEDGRITAIDIDKEAYEVGLE-------------------FIKKAGVDHK---INFIQSD 128 (234)
T ss_pred EecCcccHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---EEEEEcc
Confidence 9999999999999996 5668999999999999888877 5555666666 8999999
Q ss_pred hhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 241 ALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 241 a~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+.|+.+ .++||+||+|+++..+ ..+++.+.++|+|||+|++||+.|
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~k~~y--~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDADKPNY--VHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCCHHHH--HHHHHHHHHhcCCCeEEEEEcCCc
Confidence 99988765 3689999999998544 489999999999999999999998
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2.4e-20 Score=169.51 Aligned_cols=123 Identities=28% Similarity=0.288 Sum_probs=108.2
Q ss_pred chHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 141 ~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
+++++|+.+|++..+|+++||||+++|||++.+|.+ ++++|+|+++|+++...+.+.++
T Consensus 59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Ala---lp~dGrv~a~eid~~~~~~~~~~------------------ 117 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALA---LPEDGRVVAIEIDADAYEIGLEL------------------ 117 (237)
T ss_pred hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHh---cCCCceEEEEecChHHHHHhHHH------------------
Confidence 467899999999999999999999999999999996 89999999999999887766543
Q ss_pred HHhhhccCCcccceEeeecchhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..+|...+ |.++.|.+.+.|.++ .+.|||+|+|++++++. .+++++++++|+||+|++|++.|
T Consensus 118 -~k~agv~~K---I~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~--~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 118 -VKLAGVDHK---ITFIEGPALESLDELLADGESGTFDFAFVDADKDNYS--NYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred -HHhccccce---eeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHH--HHHHHHHhhcccccEEEEecccc
Confidence 334555555 999999999988765 37999999999998766 99999999999999999999988
No 7
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.73 E-value=2e-18 Score=139.46 Aligned_cols=105 Identities=30% Similarity=0.447 Sum_probs=52.8
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
|||||+.|+|+++|+++++... .+++++||.+++ .+..++ .+...+..++ +++..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~-~~~~~~-------------------~~~~~~~~~~---~~~~~g 56 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPG-DEQAQE-------------------IIKKAGLSDR---VEFIQG 56 (106)
T ss_dssp ---------------------------EEEESS--------------------------------GGG-BT---EEEEES
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCc-ccccch-------------------hhhhcCCCCe---EEEEEc
Confidence 7999999999999999865322 258999999996 111111 1222334444 899999
Q ss_pred chhhhhhhcC-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 240 SALTKLCEWG-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 240 da~~~L~~l~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
++.+.++.+. ++||+|||||+|.++.+..+++.++++|+|||+|++|||
T Consensus 57 ~s~~~l~~~~~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 57 DSPDFLPSLPDGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp -THHHHHHHHH--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CcHHHHHHcCCCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 9999888875 899999999999999999999999999999999999997
No 8
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=99.73 E-value=1.7e-17 Score=154.27 Aligned_cols=149 Identities=26% Similarity=0.346 Sum_probs=105.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCC-CCcEEEEEeCCCCChhhhhhhcc----cCc--ccc-chHHHHHHHHHHhhhc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLG-LDSQILCIDDFRGWPGFRDKFKE----IPM--VNG-NVLLYFQFLQNVIYQN 226 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~-~~~~V~~ID~~~~~~~~A~~~~~----~~~--~~g-~~~~~~~Fl~nv~~~g 226 (327)
-|+.|+|+||+.|.|++.|+..++.++ ++.+++++|.|+|+++...+... ... ..+ .....+++.+|+...|
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 489999999999999999888776655 47789999999999886532111 111 111 1233556777776655
Q ss_pred c-CCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 227 A-IDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 227 ~-~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+ .++ +.+.+|...++|+.. .+++.+++||+|. |+++...|+.++++|.|||+||+|||.. +|.++||++|
T Consensus 154 l~~~~---v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-YesT~~aLe~lyprl~~GGiIi~DDY~~----~gcr~AvdeF 225 (248)
T PF05711_consen 154 LLDDN---VRFVKGWFPDTLPDAPIERIALLHLDCDL-YESTKDALEFLYPRLSPGGIIIFDDYGH----PGCRKAVDEF 225 (248)
T ss_dssp TSSTT---EEEEES-HHHHCCC-TT--EEEEEE---S-HHHHHHHHHHHGGGEEEEEEEEESSTTT----HHHHHHHHHH
T ss_pred CCccc---EEEECCcchhhhccCCCccEEEEEEeccc-hHHHHHHHHHHHhhcCCCeEEEEeCCCC----hHHHHHHHHH
Confidence 4 234 899999999999875 4799999999999 8999999999999999999999999987 8999999999
Q ss_pred HHHcCCe
Q 041517 305 AKINGLK 311 (327)
Q Consensus 305 ~~~~gl~ 311 (327)
.+++|++
T Consensus 226 ~~~~gi~ 232 (248)
T PF05711_consen 226 RAEHGIT 232 (248)
T ss_dssp HHHTT--
T ss_pred HHHcCCC
Confidence 9999986
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.47 E-value=1.1e-13 Score=111.56 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=82.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.+++. .++.++++||.++.+.+.+++. ....+..++ |
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~~~---i 54 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARL----FPGARVVGVDISPEMLEIARER-------------------AAEEGLSDR---I 54 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHH----HTTSEEEEEESSHHHHHHHHHH-------------------HHHTTTTTT---E
T ss_pred CCCEEEEEcCcCCHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHH-------------------HHhcCCCCC---e
Confidence 3579999999999999999993 3489999999999999888763 322334445 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCC-C---CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHD-F---NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~-~---~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+..++. ........+||+|++++ ... + +.....++.+.++|+|||++++++
T Consensus 55 ~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 55 TFVQGDA-EFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEESCC-HGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECcc-ccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8999988 43345567899999998 321 2 233566999999999999999875
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.41 E-value=5.5e-13 Score=123.31 Aligned_cols=166 Identities=17% Similarity=0.256 Sum_probs=87.2
Q ss_pred HHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcE
Q 041517 106 RQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQ 185 (327)
Q Consensus 106 ~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~ 185 (327)
.++.+.+.|+.-++..+.-. .++..-.-..|.. .++. ++...++.+|||+|||+|..+..+++. ++++++
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n----~~ls~g~~~~wr~--~~~~-~~~~~~g~~vLDv~~GtG~~~~~l~~~---~~~~~~ 74 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMN----DLLSFGQDRRWRR--KLIK-LLGLRPGDRVLDVACGTGDVTRELARR---VGPNGK 74 (233)
T ss_dssp ------------------------------------S--HHHH-HHT--S--EEEEET-TTSHHHHHHGGG---SS---E
T ss_pred HHHHHHHHHHHHHHHhCCCc----cccCCcHHHHHHH--HHHh-ccCCCCCCEEEEeCCChHHHHHHHHHH---CCCccE
Confidence 34456677766665333321 1222223345522 2333 334456789999999999999999884 677899
Q ss_pred EEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCC
Q 041517 186 ILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFN 264 (327)
Q Consensus 186 V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~ 264 (327)
|+++|++++|.+.+++. +...+.. .|++..+++.+ |+..+.+||.|.+--. +..+
T Consensus 75 v~~vD~s~~ML~~a~~k-------------------~~~~~~~----~i~~v~~da~~-lp~~d~sfD~v~~~fglrn~~ 130 (233)
T PF01209_consen 75 VVGVDISPGMLEVARKK-------------------LKREGLQ----NIEFVQGDAED-LPFPDNSFDAVTCSFGLRNFP 130 (233)
T ss_dssp EEEEES-HHHHHHHHHH-------------------HHHTT------SEEEEE-BTTB---S-TT-EEEEEEES-GGG-S
T ss_pred EEEecCCHHHHHHHHHH-------------------HHhhCCC----CeeEEEcCHHH-hcCCCCceeEEEHHhhHHhhC
Confidence 99999999999988763 2222221 28999999877 4665799999998754 4446
Q ss_pred cHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 265 SAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 265 ~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
+....+++++++|||||.+++-|+.. |..+-.+.+...+.+
T Consensus 131 d~~~~l~E~~RVLkPGG~l~ile~~~-p~~~~~~~~~~~y~~ 171 (233)
T PF01209_consen 131 DRERALREMYRVLKPGGRLVILEFSK-PRNPLLRALYKFYFK 171 (233)
T ss_dssp SHHHHHHHHHHHEEEEEEEEEEEEEB--SSHHHHHHHHH---
T ss_pred CHHHHHHHHHHHcCCCeEEEEeeccC-CCCchhhceeeeeec
Confidence 67789999999999999999999987 555556555554443
No 11
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.40 E-value=1.7e-12 Score=117.55 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..-..++.|+..++|+.|+|+|+..|.|++++|.+++.++..++|++||++-.-.. ++.
T Consensus 19 ~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a------------------- 77 (206)
T PF04989_consen 19 QDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKA------------------- 77 (206)
T ss_dssp HHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-G-------------------
T ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHH-------------------
Confidence 34457788888999999999999999999999999988888999999999543221 110
Q ss_pred HhhhccCCcccceEeeecchhh--hhhh---c--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC---
Q 041517 222 VIYQNAIDSVLPVPFSSGSALT--KLCE---W--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA--- 291 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~--~L~~---l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~--- 291 (327)
+..-.+..+ |.+..|++.+ .+.. + .....+|+.|++|.+..+.+.|+.+.+++++|+++|+-|...+
T Consensus 78 ~e~hp~~~r---I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~ 154 (206)
T PF04989_consen 78 IESHPMSPR---ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWP 154 (206)
T ss_dssp GGG----TT---EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHH
T ss_pred HhhccccCc---eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccc
Confidence 000011223 8888887653 2221 2 2345599999999999999999999999999999999887651
Q ss_pred ------CCc-h--hHHHHHHHHHHHcCCeEEEc
Q 041517 292 ------ADN-R--GVRRAVNLFAKINGLKVQID 315 (327)
Q Consensus 292 ------~~~-~--GV~~Av~~f~~~~gl~v~~~ 315 (327)
+.| + +.+.|+.+|..++.- ..+|
T Consensus 155 ~~~~~~~~w~~g~~p~~av~~fL~~~~~-f~iD 186 (206)
T PF04989_consen 155 ESWFPDRPWGPGNNPKTAVKEFLAEHPD-FEID 186 (206)
T ss_dssp HS-------------HHHHHHHHHTTTT-EEEE
T ss_pred cccccccchhhhhHHHHHHHHHHHHCCC-cEec
Confidence 111 2 279999999998873 4443
No 12
>PLN03075 nicotianamine synthase; Provisional
Probab=99.39 E-value=2e-12 Score=123.19 Aligned_cols=120 Identities=11% Similarity=0.025 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 143 YGAVFGNLIDKVRPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 143 ~g~lL~~L~~~~~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
++.+|..+... +|++|+||||| .|++++++++. +.++++++++|.++.+.+.|++...
T Consensus 112 E~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~---~~p~~~~~giD~d~~ai~~Ar~~~~----------------- 170 (296)
T PLN03075 112 EFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKH---HLPTTSFHNFDIDPSANDVARRLVS----------------- 170 (296)
T ss_pred HHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHh---cCCCCEEEEEeCCHHHHHHHHHHhh-----------------
Confidence 35666666555 89999999999 66788888763 5779999999999999998877321
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC--CcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF--NSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
...++.++ |.|..+|+.+..+. .+.||+||+++-|.+ ....+.++.+.+.|+|||++++--+
T Consensus 171 -~~~gL~~r---V~F~~~Da~~~~~~-l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 171 -SDPDLSKR---MFFHTADVMDVTES-LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -hccCccCC---cEEEECchhhcccc-cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 12345555 99999998875322 368999999987765 5667899999999999999998653
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=5e-12 Score=117.13 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=99.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..|+.+++. .+ .++|+++|++++|.+.+++.. ...+.. .+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~---~g-~g~v~~~D~s~~ML~~a~~k~-------------------~~~~~~----~i 103 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKS---VG-TGEVVGLDISESMLEVAREKL-------------------KKKGVQ----NV 103 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHh---cC-CceEEEEECCHHHHHHHHHHh-------------------hccCcc----ce
Confidence 6889999999999999999996 45 899999999999999987732 112221 18
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKI 307 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~ 307 (327)
++..++|.+ ||..+.+||+|.+.-..++ .+....|++++|.|+|||++++-+... |..+.++.+...+...
T Consensus 104 ~fv~~dAe~-LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~-p~~~~~~~~~~~~~~~ 175 (238)
T COG2226 104 EFVVGDAEN-LPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK-PDNPVLRKAYILYYFK 175 (238)
T ss_pred EEEEechhh-CCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC-CCchhhHHHHHHHHHH
Confidence 899999877 6777899999999865443 667789999999999999999999987 5556666666655443
No 14
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.35 E-value=1.3e-11 Score=110.71 Aligned_cols=126 Identities=18% Similarity=0.263 Sum_probs=93.7
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||+|||+|..++.+|+. +++.++|+++|.++.+.+.+++ |+...+..+.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~---~~~~~~v~avD~~~~~~~~a~~-------------------n~~~~g~~~~--- 93 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLL---VGETGKVYAVDKDEKAINLTRR-------------------NAEKFGVLNN--- 93 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHH-------------------HHHHhCCCCC---
Confidence 34579999999999999999885 4567899999999999888776 3333343233
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+.+..++..+.++.+...||+||+.+.. ......++.+.++|+|||+++++-... ..+.++...+ ++.|+.
T Consensus 94 v~~~~~d~~~~l~~~~~~~D~V~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l-~~~g~~ 164 (198)
T PRK00377 94 IVLIKGEAPEILFTINEKFDRIFIGGGS--EKLKEIISASWEIIKKGGRIVIDAILL----ETVNNALSAL-ENIGFN 164 (198)
T ss_pred eEEEEechhhhHhhcCCCCCEEEECCCc--ccHHHHHHHHHHHcCCCcEEEEEeecH----HHHHHHHHHH-HHcCCC
Confidence 7777888877666666789999998754 334578999999999999999855432 3455555555 556653
No 15
>PRK04457 spermidine synthase; Provisional
Probab=99.35 E-value=1.1e-11 Score=116.36 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=90.8
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+....++++|||||||.|.++.++++. .++.++++||+++.+.+.+++++.. .
T Consensus 57 m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~-------------------~ 113 (262)
T PRK04457 57 MMGFLLFNPRPQHILQIGLGGGSLAKFIYTY----LPDTRQTAVEINPQVIAVARNHFEL-------------------P 113 (262)
T ss_pred HHHHHhcCCCCCEEEEECCCHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHcCC-------------------C
Confidence 3344443446899999999999999999984 3588999999999999988875421 1
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCC-----cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN-----SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~-----~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..++ +++..+|+.+.+.....+||+|++|+.+... ...+.++.+.++|+|||++++.-+..
T Consensus 114 ~~~~r---v~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 114 ENGER---FEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCc---eEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 11223 8888999998887766789999999855321 12578899999999999999965544
No 16
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.34 E-value=3e-11 Score=108.27 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=91.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||||||+|..++.+++. .++++|++||.++.+.+.+++ |+...+.. . ++
T Consensus 46 g~~VLDiGcGtG~~al~la~~----~~~~~V~giD~s~~~l~~A~~-------------------~~~~~~l~-~---i~ 98 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIA----RPELKVTLVDSLGKKIAFLRE-------------------VAAELGLK-N---VT 98 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHH----CCCCeEEEEeCcHHHHHHHHH-------------------HHHHcCCC-C---EE
Confidence 689999999999999999984 347899999999999988876 33333332 2 78
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+..+++.+. .. .++||+|+.++.. .....++.+.+.|+|||++++-+..+ ....+.+....+|+.+.
T Consensus 99 ~~~~d~~~~-~~-~~~fDlV~~~~~~---~~~~~l~~~~~~LkpGG~lv~~~~~~------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 99 VVHGRAEEF-GQ-EEKFDVVTSRAVA---SLSDLVELCLPLLKPGGRFLALKGRD------PEEEIAELPKALGGKVE 165 (187)
T ss_pred EEeccHhhC-CC-CCCccEEEEcccc---CHHHHHHHHHHhcCCCeEEEEEeCCC------hHHHHHHHHHhcCceEe
Confidence 888887773 33 6799999998743 34467899999999999999876443 34556666676788754
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.33 E-value=1e-11 Score=120.06 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=79.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++. +.+|++||.++.+.+.+++... ..+.... +
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~-------------------~~~~~~~---i 182 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHAD-------------------MDPVTST---I 182 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH-------------------hcCcccc---e
Confidence 3468999999999999999873 6799999999999988875321 1111112 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+++.+ ++..+++||+|+.-.. +-..+....++.+.++|+|||.+++.++..
T Consensus 183 ~~~~~dae~-l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 183 EYLCTTAEK-LADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred eEEecCHHH-hhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 788888765 3444578999996432 324456688999999999999999987654
No 18
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.1e-11 Score=113.04 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=107.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++-..+......+|+|.|+|+|..|..||++ +++.|+|+++|..+++.+.|++ |+...
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~---vg~~G~v~tyE~r~d~~k~A~~-------------------Nl~~~ 142 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARA---VGPEGHVTTYEIREDFAKTARE-------------------NLSEF 142 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHh---hCCCceEEEEEecHHHHHHHHH-------------------HHHHh
Confidence 3444445667789999999999999999996 7889999999999999998877 66666
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFA 305 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~ 305 (327)
++.++ |.+..+|..+... +..||.||+|- +.+|+.++.+...|+|||++++ |. |....|++.++.+.
T Consensus 143 ~l~d~---v~~~~~Dv~~~~~--~~~vDav~LDm----p~PW~~le~~~~~Lkpgg~~~~--y~--P~veQv~kt~~~l~ 209 (256)
T COG2519 143 GLGDR---VTLKLGDVREGID--EEDVDAVFLDL----PDPWNVLEHVSDALKPGGVVVV--YS--PTVEQVEKTVEALR 209 (256)
T ss_pred ccccc---eEEEecccccccc--ccccCEEEEcC----CChHHHHHHHHHHhCCCcEEEE--Ec--CCHHHHHHHHHHHH
Confidence 77776 7777788777543 34899999995 5688999999999999999887 33 55677888777775
Q ss_pred HHcCCe----EEEccceEEE
Q 041517 306 KINGLK----VQIDGQHWVI 321 (327)
Q Consensus 306 ~~~gl~----v~~~gq~w~i 321 (327)
+. |+. +.+...+|-.
T Consensus 210 ~~-g~~~ie~~E~l~R~~~v 228 (256)
T COG2519 210 ER-GFVDIEAVETLVRRWEV 228 (256)
T ss_pred hc-Cccchhhheeeeheeee
Confidence 54 442 3344445543
No 19
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.31 E-value=2.1e-11 Score=110.14 Aligned_cols=149 Identities=15% Similarity=0.057 Sum_probs=105.6
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
+.++..+.+ ...+|||||||+|..+..+++. .++.+|++||+++.+.+.+++. +.
T Consensus 31 ~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~----~p~~~v~gVD~s~~~i~~a~~~-------------------~~ 85 (202)
T PRK00121 31 LDWAELFGN--DAPIHLEIGFGKGEFLVEMAKA----NPDINFIGIEVHEPGVGKALKK-------------------IE 85 (202)
T ss_pred CCHHHHcCC--CCCeEEEEccCCCHHHHHHHHH----CCCccEEEEEechHHHHHHHHH-------------------HH
Confidence 345555544 5789999999999999999884 3478999999999999877653 22
Q ss_pred hhccCCcccceEeeecchhhhhhh-c-CCcEeEEEEcCCCCCC---------cHHHHHHHHHccCCCCeEEEEEcCCCCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCE-W-GVVGDLIEIDAGHDFN---------SAWADINRAWRILRPGGVIFGHDYFTAA 292 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~-l-~~~fDLIfIDa~h~~~---------~v~~dl~~~~~lL~pGGvIi~dD~~~~~ 292 (327)
..+. .+ +.+..+++.+.++. + ++.||+|++.....+. .....++.+.++|+|||++++...
T Consensus 86 ~~~~-~~---v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~---- 157 (202)
T PRK00121 86 EEGL-TN---LRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD---- 157 (202)
T ss_pred HcCC-CC---EEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----
Confidence 2222 22 78888888444542 2 4789999985321110 123578999999999999987532
Q ss_pred CchhHHHHHHHHHHHcCCeEEEccceEEEecccC
Q 041517 293 DNRGVRRAVNLFAKINGLKVQIDGQHWVIHSAVN 326 (327)
Q Consensus 293 ~~~GV~~Av~~f~~~~gl~v~~~gq~w~i~~~~~ 326 (327)
..+....+.+.++..|+.+.....+|++.++-+
T Consensus 158 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 190 (202)
T PRK00121 158 -WEGYAEYMLEVLSAEGGFLVSEAGDYVPRPEGR 190 (202)
T ss_pred -CHHHHHHHHHHHHhCcccccccchhhcccCccC
Confidence 245666677777888998887777888776643
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.29 E-value=5.4e-11 Score=105.90 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=88.1
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...++.+|||||||+|..++.+|.. .++++|++||.++.+.+.++++ +...+.. .
T Consensus 39 ~~~~~~~vLDiGcGtG~~s~~la~~----~~~~~V~~iD~s~~~~~~a~~~-------------------~~~~~~~-~- 93 (181)
T TIGR00138 39 EYLDGKKVIDIGSGAGFPGIPLAIA----RPELKLTLLESNHKKVAFLREV-------------------KAELGLN-N- 93 (181)
T ss_pred HhcCCCeEEEecCCCCccHHHHHHH----CCCCeEEEEeCcHHHHHHHHHH-------------------HHHhCCC-C-
Confidence 3456889999999999999999874 4578999999999998877653 2222331 2
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+++..+++.+. . ..++||+|+.++-+ .....++.+.++|+|||++++..... ....+..++ +-|...|++
T Consensus 94 --i~~i~~d~~~~-~-~~~~fD~I~s~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~~--~~~~~~~~~-e~~~~~~~~ 163 (181)
T TIGR00138 94 --VEIVNGRAEDF-Q-HEEQFDVITSRALA---SLNVLLELTLNLLKVGGYFLAYKGKK--YLDEIEEAK-RKCQVLGVE 163 (181)
T ss_pred --eEEEecchhhc-c-ccCCccEEEehhhh---CHHHHHHHHHHhcCCCCEEEEEcCCC--cHHHHHHHH-HhhhhcCce
Confidence 78888887763 2 25789999998833 34467788899999999999864322 112233333 334445665
Q ss_pred E
Q 041517 312 V 312 (327)
Q Consensus 312 v 312 (327)
.
T Consensus 164 ~ 164 (181)
T TIGR00138 164 P 164 (181)
T ss_pred E
Confidence 4
No 21
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=1.6e-11 Score=111.73 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=78.1
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|+.+..+++. .+++++|+++|.++++.+.++++ +...+. ++
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~---~~~~~~V~~vE~~~~~~~~a~~~-------------------l~~~g~-~~- 128 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEI---VGKSGKVVTIERIPELAEKAKKT-------------------LKKLGY-DN- 128 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHh---cCCCCEEEEEeCCHHHHHHHHHH-------------------HHHcCC-CC-
Confidence 3445689999999999999999985 45678999999999999888763 332232 12
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+..+|+.+.++. ..+||+|++++..... .+.+++.|+|||++++-
T Consensus 129 --v~~~~gd~~~~~~~-~~~fD~I~~~~~~~~~-----~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 129 --VEVIVGDGTLGYEE-NAPYDRIYVTAAGPDI-----PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred --eEEEECCcccCCCc-CCCcCEEEECCCcccc-----hHHHHHhhCCCcEEEEE
Confidence 78888887664432 4789999999875332 35678899999998873
No 22
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.29 E-value=7.5e-11 Score=104.99 Aligned_cols=123 Identities=18% Similarity=0.240 Sum_probs=98.6
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
+..+..+++|||||+|..++.+|. +++.+++|+||-+++..+..++ |....|. ++
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~----~~p~~~v~AIe~~~~a~~~~~~-------------------N~~~fg~-~n- 85 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWAL----AGPSGRVIAIERDEEALELIER-------------------NAARFGV-DN- 85 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHH----hCCCceEEEEecCHHHHHHHHH-------------------HHHHhCC-Cc-
Confidence 344567999999999999999996 4789999999999998877665 6666663 33
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl 310 (327)
+.+..|++.+.|+.+. .+|.|||.|.. ..+ .-++.++.+|+|||.||+.-+.. .....+++.+.+ .|.
T Consensus 86 --~~vv~g~Ap~~L~~~~-~~daiFIGGg~-~i~--~ile~~~~~l~~ggrlV~naitl----E~~~~a~~~~~~-~g~ 153 (187)
T COG2242 86 --LEVVEGDAPEALPDLP-SPDAIFIGGGG-NIE--EILEAAWERLKPGGRLVANAITL----ETLAKALEALEQ-LGG 153 (187)
T ss_pred --EEEEeccchHhhcCCC-CCCEEEECCCC-CHH--HHHHHHHHHcCcCCeEEEEeecH----HHHHHHHHHHHH-cCC
Confidence 8999999999998765 89999999994 333 68899999999999999977765 446666666654 444
No 23
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=2e-11 Score=110.36 Aligned_cols=102 Identities=19% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|+.+..+++. +++.++|+++|.++++.+.+++ |+...+..++ +
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~---~~~~g~V~~iD~~~~~~~~a~~-------------------~l~~~~~~~~---v 126 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEA---IERRGKVYTVEIVKELAIYAAQ-------------------NIERLGYWGV---V 126 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHh---cCCCCEEEEEeCCHHHHHHHHH-------------------HHHHcCCCCc---E
Confidence 3469999999999999999985 4557899999999998887765 3333343333 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+..+++.+.++. ..+||.|++++....- .+.+++.|+|||+|++..
T Consensus 127 ~~~~~d~~~~~~~-~~~fD~Ii~~~~~~~~-----~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 127 EVYHGDGKRGLEK-HAPFDAIIVTAAASTI-----PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEECCcccCCcc-CCCccEEEEccCcchh-----hHHHHHhcCcCcEEEEEE
Confidence 7888887765543 4689999999875322 267889999999998854
No 24
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.27 E-value=3.3e-11 Score=112.40 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=103.8
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
..++-..+...+..+|||.|+|+|..|.+|+++ +++.|+|+++|..++..+.|++ |+.
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~---v~p~G~v~t~E~~~~~~~~A~~-------------------n~~ 86 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARA---VGPTGHVYTYEFREDRAEKARK-------------------NFE 86 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHH---HTTTSEEEEEESSHHHHHHHHH-------------------HHH
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHH---hCCCeEEEccccCHHHHHHHHH-------------------HHH
Confidence 334444556666789999999999999999997 6789999999999988888876 555
Q ss_pred hhccCCcccceEeeecchh-hhhh-hcCCcEeEEEEcCCCCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCCCchhHHHH
Q 041517 224 YQNAIDSVLPVPFSSGSAL-TKLC-EWGVVGDLIEIDAGHDFNSAWADINRAWRIL-RPGGVIFGHDYFTAADNRGVRRA 300 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~-~~L~-~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL-~pGGvIi~dD~~~~~~~~GV~~A 300 (327)
..|+.++ |.+...|.. +.+. .++..+|.||+|- +.+|..+..+.+.| ++||+|++- .|....|.+.
T Consensus 87 ~~gl~~~---v~~~~~Dv~~~g~~~~~~~~~DavfLDl----p~Pw~~i~~~~~~L~~~gG~i~~f----sP~ieQv~~~ 155 (247)
T PF08704_consen 87 RHGLDDN---VTVHHRDVCEEGFDEELESDFDAVFLDL----PDPWEAIPHAKRALKKPGGRICCF----SPCIEQVQKT 155 (247)
T ss_dssp HTTCCTT---EEEEES-GGCG--STT-TTSEEEEEEES----SSGGGGHHHHHHHE-EEEEEEEEE----ESSHHHHHHH
T ss_pred HcCCCCC---ceeEecceecccccccccCcccEEEEeC----CCHHHHHHHHHHHHhcCCceEEEE----CCCHHHHHHH
Confidence 5566655 888888764 3332 2346899999996 44678899999999 899999872 3667788888
Q ss_pred HHHHHHHcCCe----EEEccceEEEec
Q 041517 301 VNLFAKINGLK----VQIDGQHWVIHS 323 (327)
Q Consensus 301 v~~f~~~~gl~----v~~~gq~w~i~~ 323 (327)
++.+.+ .|+. +......|-+.+
T Consensus 156 ~~~L~~-~gf~~i~~~Evl~R~~~v~~ 181 (247)
T PF08704_consen 156 VEALRE-HGFTDIETVEVLLREWEVRP 181 (247)
T ss_dssp HHHHHH-TTEEEEEEEEEEEEEEEEET
T ss_pred HHHHHH-CCCeeeEEEEEEeeEEEEEe
Confidence 888866 4543 344566666543
No 25
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.6e-11 Score=109.86 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
+.+.+++.| ...+..+|||||||+||.|..||+. .++|++||..++..+.|++ |
T Consensus 60 ~vA~m~~~L-~~~~g~~VLEIGtGsGY~aAvla~l------~~~V~siEr~~~L~~~A~~-------------------~ 113 (209)
T COG2518 60 MVARMLQLL-ELKPGDRVLEIGTGSGYQAAVLARL------VGRVVSIERIEELAEQARR-------------------N 113 (209)
T ss_pred HHHHHHHHh-CCCCCCeEEEECCCchHHHHHHHHH------hCeEEEEEEcHHHHHHHHH-------------------H
Confidence 344455444 4446789999999999999999996 4599999999998888876 5
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+...|..+ |.+.+||+...++. ..+||.|++.|.-+.-+ +.+++.|++||++++=
T Consensus 114 L~~lg~~n----V~v~~gDG~~G~~~-~aPyD~I~Vtaaa~~vP-----~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 114 LETLGYEN----VTVRHGDGSKGWPE-EAPYDRIIVTAAAPEVP-----EALLDQLKPGGRLVIP 168 (209)
T ss_pred HHHcCCCc----eEEEECCcccCCCC-CCCcCEEEEeeccCCCC-----HHHHHhcccCCEEEEE
Confidence 55555432 78888988776554 37999999999887777 7889999999998873
No 26
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.25 E-value=9.1e-11 Score=104.98 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++...+...+..+|||+|||+|..++.+++. .++++|++||.++.+.+.+++ |+...
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~----~~~~~V~~vD~s~~~~~~a~~-------------------n~~~~ 87 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLL----CPKGRVIAIERDEEVVNLIRR-------------------NCDRF 87 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHh
Confidence 3333334445679999999999999999874 457899999999999887766 33333
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+. ++ +++..+++.+.+..+...+|.+++|+.. .....++.+.++|+|||.+++..+..
T Consensus 88 ~~-~~---v~~~~~d~~~~~~~~~~~~d~v~~~~~~---~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 88 GV-KN---VEVIEGSAPECLAQLAPAPDRVCIEGGR---PIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CC-CC---eEEEECchHHHHhhCCCCCCEEEEECCc---CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 33 12 7788888877555544557899998753 33478899999999999999987754
No 27
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.25 E-value=4e-11 Score=108.95 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=78.0
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|+.+..|++. .+++++|+++|.++++.+.+++ |+...+. ++
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~---~~~~g~V~~vD~~~~~~~~A~~-------------------~~~~~g~-~~- 129 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEI---VGRDGLVVSIERIPELAEKAER-------------------RLRKLGL-DN- 129 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHH---hCCCCEEEEEeCCHHHHHHHHH-------------------HHHHCCC-CC-
Confidence 4445689999999999999999985 4557889999999999888876 3333333 22
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+..+++.+.++. ..+||+|++++.... ..+.+.+.|+|||++++.
T Consensus 130 --v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~~-----~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 130 --VIVIVGDGTQGWEP-LAPYDRIYVTAAGPK-----IPEALIDQLKEGGILVMP 176 (215)
T ss_pred --eEEEECCcccCCcc-cCCCCEEEEcCCccc-----ccHHHHHhcCcCcEEEEE
Confidence 77888887765433 368999999976533 235678899999998873
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=3.4e-11 Score=112.10 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=81.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. +.+|+++|+++++.+.|++. +...+..++ +
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~-------------------~~~~g~~~~---v 95 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQA-------------------AEAKGVSDN---M 95 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHH-------------------HHhcCCccc---e
Confidence 4689999999999999999984 68999999999999888763 333333333 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..++..+..+..+++||+|++..... ..+....++.+.++|+|||++++..+.
T Consensus 96 ~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 96 QFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred EEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 7888887764334457899999876532 244567899999999999999876544
No 29
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.23 E-value=1.8e-10 Score=102.26 Aligned_cols=122 Identities=18% Similarity=0.119 Sum_probs=86.6
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|..++.+++. .++.+++++|.++.+.+.+++ |+...+.. +
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~-------------------n~~~~~~~-~- 82 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQ----FPSLQVTAIERNPDALRLIKE-------------------NRQRFGCG-N- 82 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH-------------------HHHHhCCC-C-
Confidence 3345789999999999999999984 457899999999998887766 33322321 2
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl 310 (327)
+.+..++.... +..+||+|++++.... ....++.+.+.|+|||++++++... ....+.. .+.++.|+
T Consensus 83 --i~~~~~d~~~~---~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~lv~~~~~~----~~~~~~~-~~l~~~g~ 149 (187)
T PRK08287 83 --IDIIPGEAPIE---LPGKADAIFIGGSGGN--LTAIIDWSLAHLHPGGRLVLTFILL----ENLHSAL-AHLEKCGV 149 (187)
T ss_pred --eEEEecCchhh---cCcCCCEEEECCCccC--HHHHHHHHHHhcCCCeEEEEEEecH----hhHHHHH-HHHHHCCC
Confidence 67777765432 2467999999876433 3467889999999999999977543 2233333 34555564
No 30
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.23 E-value=2.6e-11 Score=110.47 Aligned_cols=109 Identities=18% Similarity=0.177 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
+.+|+.| +..+..+|||||||+||+|..||.. .++.++|++||.++...+.|++ |+.
T Consensus 62 a~~l~~L-~l~pg~~VLeIGtGsGY~aAlla~l---vg~~g~Vv~vE~~~~l~~~A~~-------------------~l~ 118 (209)
T PF01135_consen 62 ARMLEAL-DLKPGDRVLEIGTGSGYQAALLAHL---VGPVGRVVSVERDPELAERARR-------------------NLA 118 (209)
T ss_dssp HHHHHHT-TC-TT-EEEEES-TTSHHHHHHHHH---HSTTEEEEEEESBHHHHHHHHH-------------------HHH
T ss_pred HHHHHHH-hcCCCCEEEEecCCCcHHHHHHHHh---cCccceEEEECccHHHHHHHHH-------------------HHH
Confidence 4455544 3445679999999999999999996 4678899999999988887766 333
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
..+.. .|.+..+|+...++. ..+||.|++.+.-+..+ +.|++.|++||+||+
T Consensus 119 ~~~~~----nv~~~~gdg~~g~~~-~apfD~I~v~~a~~~ip-----~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 119 RLGID----NVEVVVGDGSEGWPE-EAPFDRIIVTAAVPEIP-----EALLEQLKPGGRLVA 170 (209)
T ss_dssp HHTTH----SEEEEES-GGGTTGG-G-SEEEEEESSBBSS-------HHHHHTEEEEEEEEE
T ss_pred HhccC----ceeEEEcchhhcccc-CCCcCEEEEeeccchHH-----HHHHHhcCCCcEEEE
Confidence 33332 288899998776655 46899999999876555 678999999999987
No 31
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=2.2e-10 Score=107.45 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=85.7
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|..+..+++. .++.++|+++|++++|.+.|++... ....+...+
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~---~~~~~~V~gvD~S~~ml~~A~~r~~-----------------~~~~~~~~~- 128 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEK---VGSDGKVMGLDFSSEQLAVAASRQE-----------------LKAKSCYKN- 128 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHHHhh-----------------hhhhccCCC-
Confidence 3335679999999999999998874 4567899999999999998865321 000011112
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..+++.+ ++..+++||+|++. +-|..+.....+.++.+.|+|||.+++.|+..
T Consensus 129 --i~~~~~d~~~-lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 129 --IEWIEGDATD-LPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred --eEEEEccccc-CCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 7788888655 34445789999875 44555667789999999999999999999876
No 32
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.21 E-value=2.3e-10 Score=104.29 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=81.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .+++++|+++|+++.+.+.+++. +...+. ++ +
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~-~~---v 98 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEA---VGPEGHVIGLDFSENMLSVGRQK-------------------VKDAGL-HN---V 98 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHHH-------------------HHhcCC-Cc---e
Confidence 4579999999999999999985 56678999999999988877652 222222 12 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+++.+. +..+++||+|++... |..+.....++++.++|+|||++++.+...
T Consensus 99 ~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 99 ELVHGNAMEL-PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred EEEEechhcC-CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 7777777652 333578999998754 333556678999999999999998876543
No 33
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.20 E-value=1.3e-10 Score=94.64 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||.|..+..+++. . ++++++++|.++.+.+.++++ +...+.. + +
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~---~-~~~~v~~vD~s~~~~~~a~~~-------------------~~~~~~~-~---~ 71 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARL---V-PNGRVYAIERNPEALRLIERN-------------------ARRFGVS-N---I 71 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---C-CCceEEEEcCCHHHHHHHHHH-------------------HHHhCCC-c---e
Confidence 3569999999999999999984 3 358999999999988877653 2222221 2 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+..++..+.+.....+||.|++++... .....++.+.+.|+|||.+++.=
T Consensus 72 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 72 VIVEGDAPEALEDSLPEPDRVFIGGSGG--LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEeccccccChhhcCCCCEEEECCcch--hHHHHHHHHHHHcCCCCEEEEEe
Confidence 6666765543333446899999987542 23478999999999999998853
No 34
>PLN02244 tocopherol O-methyltransferase
Probab=99.18 E-value=1.7e-10 Score=112.20 Aligned_cols=108 Identities=21% Similarity=0.205 Sum_probs=82.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|.++..+++. . +.+|++||+++.+.+.+++. ....+..++ +
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~---~--g~~v~gvD~s~~~i~~a~~~-------------------~~~~g~~~~---v 170 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARK---Y--GANVKGITLSPVQAARANAL-------------------AAAQGLSDK---V 170 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHh---c--CCEEEEEECCHHHHHHHHHH-------------------HHhcCCCCc---e
Confidence 4579999999999999999984 2 67999999999988777652 222333333 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+|+.+ ++..++.||+|+. ++.+...+....++++.++|+|||.+++.++..
T Consensus 171 ~~~~~D~~~-~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 171 SFQVADALN-QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred EEEEcCccc-CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 888888765 3434578999997 444445666789999999999999999887653
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.14 E-value=1.7e-10 Score=98.91 Aligned_cols=109 Identities=19% Similarity=0.229 Sum_probs=85.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..+..|+.. ++++.++++||.++.+.+.+++.. ...+.. + +
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~---~~~~~~i~gvD~s~~~i~~a~~~~-------------------~~~~~~-n---i 56 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKE---LNPGAKIIGVDISEEMIEYAKKRA-------------------KELGLD-N---I 56 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHH---STTTSEEEEEESSHHHHHHHHHHH-------------------HHTTST-T---E
T ss_pred CCCEEEEecCcCcHHHHHHHHh---cCCCCEEEEEECcHHHHHHhhccc-------------------cccccc-c---c
Confidence 4679999999999999999952 567899999999999998887632 222332 2 8
Q ss_pred Eeeecchhhhhhh-cCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCE-WGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~-l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ ++. +...||+|+..+. |........++.+.+.|++||++++.++.+
T Consensus 57 ~~~~~d~~~-l~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~ 113 (152)
T PF13847_consen 57 EFIQGDIED-LPQELEEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNH 113 (152)
T ss_dssp EEEESBTTC-GCGCSSTTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEH
T ss_pred ceEEeehhc-cccccCCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECCh
Confidence 899999888 553 2378999999864 334455578999999999999999999985
No 36
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.12 E-value=3.3e-10 Score=102.46 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=74.7
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
++..+..+|||||||+|+++..+++. .++++++|.++.+.+.++++ +...+..
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~------~~~v~~vd~~~~~~~~a~~~-------------------~~~~~~~-- 126 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHL------VRRVFSVERIKTLQWEAKRR-------------------LKQLGLH-- 126 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHH------hCEEEEEeCCHHHHHHHHHH-------------------HHHCCCC--
Confidence 33445689999999999999988875 25899999998888777653 3222321
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.+.+..+++.+.++. .++||+|++++.... ..+.+.+.|+|||++++.-.
T Consensus 127 --~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~~-----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 127 --NVSVRHGDGWKGWPA-YAPFDRILVTAAAPE-----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred --ceEEEECCcccCCCc-CCCcCEEEEccCchh-----hhHHHHHhcCCCcEEEEEEc
Confidence 177778876654432 368999999976532 24677899999999888543
No 37
>PRK01581 speE spermidine synthase; Validated
Probab=99.09 E-value=1.5e-09 Score=106.03 Aligned_cols=140 Identities=15% Similarity=0.060 Sum_probs=94.6
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDS 230 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~ 230 (327)
....|++||+||||.|+++..+++ .++..+|++||+++.+.+.|+++... ..+....+ ..+
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk----~~~v~~It~VEIDpeVIelAr~~~~L--------------~~~~~~~~~DpR 208 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLK----YETVLHVDLVDLDGSMINMARNVPEL--------------VSLNKSAFFDNR 208 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhcccc--------------chhccccCCCCc
Confidence 345799999999999998777666 35568999999999999999864221 11111111 223
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+++..+|+.+.+....+.||+|++|....... ..+.++.+.+.|+|||+++...-... ..+-+-..+...
T Consensus 209 ---V~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~-~~~~~~~~i~~t 284 (374)
T PRK01581 209 ---VNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA-DAPLVYWSIGNT 284 (374)
T ss_pred ---eEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh-hhHHHHHHHHHH
Confidence 88899999998877778999999996542211 23568899999999999988744321 112222334444
Q ss_pred HHHcCCeEE
Q 041517 305 AKINGLKVQ 313 (327)
Q Consensus 305 ~~~~gl~v~ 313 (327)
++..+..+.
T Consensus 285 L~~af~~v~ 293 (374)
T PRK01581 285 IEHAGLTVK 293 (374)
T ss_pred HHHhCCceE
Confidence 455555544
No 38
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.08 E-value=1.2e-09 Score=102.67 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=77.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .+.+|+++|+++.+.+.+++... . .++ +
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~-----~~~~v~giD~s~~~~~~a~~~~~-------------------~---~~~---i 101 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEK-----YGAHVHGVDICEKMVNIAKLRNS-------------------D---KNK---I 101 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhh-----cCCEEEEEECCHHHHHHHHHHcC-------------------c---CCc---e
Confidence 4579999999999999998863 25799999999998887765321 1 112 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEE-cCCCCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI-DAGHDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI-Da~h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ ++..+++||+|+. ++.+.. ......++.+.++|+|||.+++.|+..
T Consensus 102 ~~~~~D~~~-~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 102 EFEANDILK-KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEEECCccc-CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 777776554 2222478999998 554322 255678999999999999999999865
No 39
>PRK00811 spermidine synthase; Provisional
Probab=99.08 E-value=1.7e-09 Score=102.67 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=83.3
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc-cCCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN-AIDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g-~~~~v~ 232 (327)
-+|++||+||||.|..+..+++ .+...+|++||+++.+.+.++++.. .+.... ...+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~----~~~~~~V~~VEid~~vv~~a~~~~~----------------~~~~~~~~d~r-- 132 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK----HPSVEKITLVEIDERVVEVCRKYLP----------------EIAGGAYDDPR-- 132 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc----CCCCCEEEEEeCCHHHHHHHHHHhH----------------HhccccccCCc--
Confidence 3689999999999999999886 3446799999999999998887532 111000 0223
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+++..+|+.+.+...+++||+|++|....+.+ ..+.++.+.++|+|||++++.-
T Consensus 133 -v~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 133 -VELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred -eEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 88899999988766567999999997543322 1355788999999999999853
No 40
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.07 E-value=4.3e-09 Score=104.54 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=97.4
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-Ccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI-DSV 231 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~-~~v 231 (327)
..+.++|||+|||+|.+++.++. +...+|++||.++.+.+.+++ |+...++. ++
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~-----~ga~~V~~VD~s~~al~~a~~-------------------N~~~Ngl~~~~- 272 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALM-----GGCSQVVSVDTSQEALDIARQ-------------------NVELNKLDLSK- 272 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHh-----CCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCCc-
Confidence 34578999999999999887654 224599999999999988876 44444443 23
Q ss_pred cceEeeecchhhhhhhc---CCcEeEEEEcCCCCCC----------cHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHH
Q 041517 232 LPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDFN----------SAWADINRAWRILRPGGVIFGHDYFTAADNRGVR 298 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~----------~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~ 298 (327)
+++..+|+.+.+..+ +++||+|++|...-.. .....++.+.++|+|||+++...+...-...--.
T Consensus 273 --v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~ 350 (396)
T PRK15128 273 --AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQ 350 (396)
T ss_pred --EEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHH
Confidence 889999998877654 4689999999543111 1122345678999999999987765433333466
Q ss_pred HHHHHHHHHcCCeEEEcc
Q 041517 299 RAVNLFAKINGLKVQIDG 316 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~~~g 316 (327)
+.+.+.+...|.+++..+
T Consensus 351 ~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 351 KIIADAAIDAGRDVQFIE 368 (396)
T ss_pred HHHHHHHHHcCCeEEEEE
Confidence 777777888887776543
No 41
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.06 E-value=2.7e-09 Score=93.64 Aligned_cols=139 Identities=18% Similarity=0.187 Sum_probs=89.9
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+|...+...+.++|||+|||+|..++.+++. .+..+|+++|+++.+.+.+++ |+...
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~----~~~~~v~~vDi~~~a~~~a~~-------------------n~~~n 78 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKR----GPDAKVTAVDINPDALELAKR-------------------NAERN 78 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHT----STCEEEEEEESBHHHHHHHHH-------------------HHHHT
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHh----CCCCEEEEEcCCHHHHHHHHH-------------------HHHhc
Confidence 4433334447889999999999999999983 557789999999988887766 44443
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CC-----CcHHHHHHHHHccCCCCeEEEE-EcCCCCCCchhHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DF-----NSAWADINRAWRILRPGGVIFG-HDYFTAADNRGVR 298 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~-----~~v~~dl~~~~~lL~pGGvIi~-dD~~~~~~~~GV~ 298 (327)
+..+ +.+...|..+.++ +.+||+|+.+--. .. ......++.+.++|+|||.+++ .... .+.+
T Consensus 79 ~~~~----v~~~~~d~~~~~~--~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~-----~~~~ 147 (170)
T PF05175_consen 79 GLEN----VEVVQSDLFEALP--DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH-----LGYE 147 (170)
T ss_dssp TCTT----EEEEESSTTTTCC--TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT-----SCHH
T ss_pred Cccc----ccccccccccccc--ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC-----CChH
Confidence 4322 6677777666443 4799999997421 11 1235568899999999997744 2222 2456
Q ss_pred HHHHHHHHHcCCeEEEccceEE
Q 041517 299 RAVNLFAKINGLKVQIDGQHWV 320 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~~~gq~w~ 320 (327)
+.+++.+. ..++......|.
T Consensus 148 ~~l~~~f~--~~~~~~~~~~~~ 167 (170)
T PF05175_consen 148 RLLKELFG--DVEVVAKNKGFR 167 (170)
T ss_dssp HHHHHHHS----EEEEEESSEE
T ss_pred HHHHHhcC--CEEEEEECCCEE
Confidence 66666655 444444333333
No 42
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.06 E-value=3.1e-09 Score=98.92 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=90.2
Q ss_pred HHHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 144 GAVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 144 g~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
...+..|.+.. +..+|||||||+|..++.+++ .+ ..+|+++|+++.+.+.+++ |+
T Consensus 107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~----~g-~~~v~giDis~~~l~~A~~-------------------n~ 162 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAK----LG-AKKVLAVDIDPQAVEAARE-------------------NA 162 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHH----cC-CCeEEEEECCHHHHHHHHH-------------------HH
Confidence 34455554433 578999999999999887765 34 3469999999999888876 33
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHH
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN 302 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~ 302 (327)
...+..+. +.+..++ .+||+|+.+... +.....+..+.++|+|||++++.++... -...+.
T Consensus 163 ~~~~~~~~---~~~~~~~---------~~fD~Vvani~~--~~~~~l~~~~~~~LkpgG~lilsgi~~~-----~~~~v~ 223 (250)
T PRK00517 163 ELNGVELN---VYLPQGD---------LKADVIVANILA--NPLLELAPDLARLLKPGGRLILSGILEE-----QADEVL 223 (250)
T ss_pred HHcCCCce---EEEccCC---------CCcCEEEEcCcH--HHHHHHHHHHHHhcCCCcEEEEEECcHh-----hHHHHH
Confidence 33333222 3333221 269999986543 3345678899999999999999887752 234555
Q ss_pred HHHHHcCCeEE--EccceEEE
Q 041517 303 LFAKINGLKVQ--IDGQHWVI 321 (327)
Q Consensus 303 ~f~~~~gl~v~--~~gq~w~i 321 (327)
..+...|+++. .....|+.
T Consensus 224 ~~l~~~Gf~~~~~~~~~~W~~ 244 (250)
T PRK00517 224 EAYEEAGFTLDEVLERGEWVA 244 (250)
T ss_pred HHHHHCCCEEEEEEEeCCEEE
Confidence 66677887754 23445653
No 43
>PRK04266 fibrillarin; Provisional
Probab=99.05 E-value=2.8e-09 Score=98.28 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=88.7
Q ss_pred HHHHHHHH--HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 143 YGAVFGNL--IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 143 ~g~lL~~L--~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
...+|..+ +...+..+|||+|||+|..+..+++. .+ .++|+++|.+++|.+...+.
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~---v~-~g~V~avD~~~~ml~~l~~~------------------ 115 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDI---VE-EGVVYAVEFAPRPMRELLEV------------------ 115 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHh---cC-CCeEEEEECCHHHHHHHHHH------------------
Confidence 34455544 33334569999999999999999985 44 78999999999887644331
Q ss_pred HHhhhccCCcccceEeeecchhhhh--hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE------EcCCCCC
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKL--CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG------HDYFTAA 292 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L--~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~------dD~~~~~ 292 (327)
.... .. |.+..+++.+.. ..+..+||+||.|..... .....++++.+.|+|||.+++ .|+...+
T Consensus 116 -a~~~---~n---v~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~-~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~ 187 (226)
T PRK04266 116 -AEER---KN---IIPILADARKPERYAHVVEKVDVIYQDVAQPN-QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP 187 (226)
T ss_pred -hhhc---CC---cEEEECCCCCcchhhhccccCCEEEECCCChh-HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH
Confidence 1110 11 555566654311 122356999999865421 222358999999999999998 6665532
Q ss_pred CchhHHHHHHHHHHHcCCeEE
Q 041517 293 DNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 293 ~~~GV~~Av~~f~~~~gl~v~ 313 (327)
....+-....++..|+++.
T Consensus 188 --~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 188 --KEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred --HHHHHHHHHHHHHcCCeEE
Confidence 1112223355666787754
No 44
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.04 E-value=3.3e-10 Score=87.50 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=69.6
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
||||||+|..+..+++. +..+++++|+++++.+.+++... .. . +.+..+
T Consensus 1 LdiG~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~~~~~~~-------------------~~----~---~~~~~~ 49 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----GGASVTGIDISEEMLEQARKRLK-------------------NE----G---VSFRQG 49 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----TTCEEEEEES-HHHHHHHHHHTT-------------------TS----T---EEEEES
T ss_pred CEecCcCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHhccc-------------------cc----C---chheee
Confidence 79999999999999983 58999999999998877665321 11 1 446667
Q ss_pred chhhhhhhcCCcEeEEEEcCCCCC-CcHHHHHHHHHccCCCCeEEEE
Q 041517 240 SALTKLCEWGVVGDLIEIDAGHDF-NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 240 da~~~L~~l~~~fDLIfIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..+ ++..+++||+|+.-....+ +.....++++.+.|||||++++
T Consensus 50 d~~~-l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 50 DAED-LPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp BTTS-SSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred hHHh-CccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 6555 3555789999997765433 5777899999999999999986
No 45
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.04 E-value=1.1e-09 Score=98.28 Aligned_cols=110 Identities=15% Similarity=0.033 Sum_probs=73.3
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++.. +....+++|||+|||+|..++++|+. +.+|+++|+++.+.+.+++.. ...
T Consensus 22 l~~~-~~~~~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~-------------------~~~ 75 (195)
T TIGR00477 22 VREA-VKTVAPCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMK-------------------ARE 75 (195)
T ss_pred HHHH-hccCCCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHH-------------------HHh
Confidence 4443 34556899999999999999999973 579999999999888765522 111
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+. ++.....+... + .++.+||+|+.-.. |.. +.....++.+.++|+|||++++-++
T Consensus 76 ~~-----~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 76 NL-----PLRTDAYDINA-A-ALNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CC-----CceeEeccchh-c-cccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 22 13333343322 1 12457999986432 322 2345788999999999998554433
No 46
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.04 E-value=4.6e-09 Score=92.55 Aligned_cols=132 Identities=15% Similarity=0.081 Sum_probs=88.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.+|...+...++++|||+|||+|..+..+++. + .+|+++|.++.+.+.+++ |+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~-------------------~~~~ 63 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGK----G--KCILTTDINPFAVKELRE-------------------NAKL 63 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc----C--CEEEEEECCHHHHHHHHH-------------------HHHH
Confidence 45555555667889999999999999999973 2 389999999999887766 3322
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-CC---------------------cHHHHHHHHHccCCCCeE
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-FN---------------------SAWADINRAWRILRPGGV 282 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~---------------------~v~~dl~~~~~lL~pGGv 282 (327)
.+. .+++..++..+.+ .++||+|+.+...- .. .....++.+.++|+|||.
T Consensus 64 ~~~-----~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 64 NNV-----GLDVVMTDLFKGV---RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred cCC-----ceEEEEccccccc---CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 222 1666667655432 35899999874321 00 023468888999999998
Q ss_pred EEEEcCCCCCCchhHHHHHHHHHHHcCCeEEE
Q 041517 283 IFGHDYFTAADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 283 Ii~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
+++-+... .+..+. .+++++.|+++..
T Consensus 136 ~~~~~~~~----~~~~~~-~~~l~~~gf~~~~ 162 (179)
T TIGR00537 136 VQLIQSSL----NGEPDT-FDKLDERGFRYEI 162 (179)
T ss_pred EEEEEecc----CChHHH-HHHHHhCCCeEEE
Confidence 88765443 233333 4444666777654
No 47
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=3.1e-09 Score=106.60 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+++..++...+..+|||+|||.|..|+++++. ++++++|+++|+++.+.+.+++ |+..
T Consensus 227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~---~~~~g~V~a~Dis~~rl~~~~~-------------------n~~r 284 (431)
T PRK14903 227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAEL---MKDQGKILAVDISREKIQLVEK-------------------HAKR 284 (431)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH---cCCCCEEEEEECCHHHHHHHHH-------------------HHHH
Confidence 44454555555679999999999999999985 5567899999999998887765 4444
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCCCe
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRPGG 281 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~pGG 281 (327)
.|.. . +.+..+|+.+......++||.|++|+--.... ..+.|+.++++|+|||
T Consensus 285 ~g~~-~---v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG 360 (431)
T PRK14903 285 LKLS-S---IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGG 360 (431)
T ss_pred cCCC-e---EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4442 2 77778887653223357899999996542211 1345789999999999
Q ss_pred EEEEEcCCCCCCchhHHHHHHHHHHH-cCCeE
Q 041517 282 VIFGHDYFTAADNRGVRRAVNLFAKI-NGLKV 312 (327)
Q Consensus 282 vIi~dD~~~~~~~~GV~~Av~~f~~~-~gl~v 312 (327)
+++...+...+ ..-.+.|+.|.+. +++.+
T Consensus 361 ~LvYsTCs~~~--eEne~vv~~fl~~~~~~~~ 390 (431)
T PRK14903 361 ILLYSTCTVTK--EENTEVVKRFVYEQKDAEV 390 (431)
T ss_pred EEEEEECCCCh--hhCHHHHHHHHHhCCCcEE
Confidence 99999998742 2233555556553 34543
No 48
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.03 E-value=3.1e-09 Score=99.59 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=81.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..++.+++. .++.++|+++|.++.+.+.++++ ....+. ++ +
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~---~g~~~~v~gvD~s~~~l~~A~~~-------------------~~~~g~-~~---v 130 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARR---VGPTGKVIGVDMTPEMLAKARAN-------------------ARKAGY-TN---V 130 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---hCCCCEEEEECCCHHHHHHHHHH-------------------HHHcCC-CC---E
Confidence 4679999999999998887774 56678999999999999888763 222222 12 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ ++..++.||+|+.... |..+.....+++++++|+|||++++.|+..
T Consensus 131 ~~~~~d~~~-l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 131 EFRLGEIEA-LPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EEEEcchhh-CCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 777777644 3433468999998754 323445678999999999999999988764
No 49
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.03 E-value=6e-09 Score=95.91 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=78.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++.+ ..++.+++++|+++.|.+.+++. +...+...+ +
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~--~~p~~~v~gvD~s~~ml~~a~~~-------------------~~~~~~~~~---v 108 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI--NQPNVKIIGIDNSQPMVERCRQH-------------------IAAYHSEIP---V 108 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc--CCCCCeEEEEeCCHHHHHHHHHH-------------------HHhcCCCCC---e
Confidence 35689999999999999999852 13589999999999999888763 222222222 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..++..+. +. ..+|+|++... |-. ......++.+.+.|+|||++++.|...
T Consensus 109 ~~~~~d~~~~-~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 109 EILCNDIRHV-EI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred EEEECChhhC-CC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 7778877653 21 35788876543 212 123567899999999999999999876
No 50
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.00 E-value=2.3e-09 Score=97.20 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=87.9
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
++|||||||+|..+..+++. . ++.+++++|+++++.+.+++ ++...++.++ +.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~---~-~~~~v~gid~s~~~~~~a~~-------------------~~~~~gl~~~---i~~ 54 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAER---H-PHLQLHGYTISPEQAEVGRE-------------------RIRALGLQGR---IRI 54 (224)
T ss_pred CeEEEECCCCCHHHHHHHHH---C-CCCEEEEEECCHHHHHHHHH-------------------HHHhcCCCcc---eEE
Confidence 47999999999999999884 2 46799999999888777665 3333344444 677
Q ss_pred eecchhhhhhhcCCcEeEEEEcC-CCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC---C--------chhHHHHHHHH
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDA-GHDFNSAWADINRAWRILRPGGVIFGHDYFTAA---D--------NRGVRRAVNLF 304 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~---~--------~~GV~~Av~~f 304 (327)
..+|..+. + ..++||+|+.-. .+........++.+.++|+|||.+++.++.... . .+. ..-+..+
T Consensus 55 ~~~d~~~~-~-~~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~ 131 (224)
T smart00828 55 FYRDSAKD-P-FPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVT-REEWAEL 131 (224)
T ss_pred EecccccC-C-CCCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCC-HHHHHHH
Confidence 77665432 1 245899999643 222344568899999999999999998875310 0 111 2335556
Q ss_pred HHHcCCeEE
Q 041517 305 AKINGLKVQ 313 (327)
Q Consensus 305 ~~~~gl~v~ 313 (327)
+...|+++.
T Consensus 132 l~~~Gf~~~ 140 (224)
T smart00828 132 LARNNLRVV 140 (224)
T ss_pred HHHCCCeEE
Confidence 677888764
No 51
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.00 E-value=1.8e-09 Score=97.13 Aligned_cols=107 Identities=14% Similarity=0.030 Sum_probs=73.9
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+....+++|||+|||+|..+++||+. +.+|+++|+++.+.+.+++. +...+..
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~-------------------~~~~~~~-- 78 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERI-------------------KAAENLD-- 78 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHH-------------------HHHcCCC--
Confidence 34556789999999999999999983 57999999999998877653 2222221
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCC-CC--CCcHHHHHHHHHccCCCCeEEE-EEcC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HD--FNSAWADINRAWRILRPGGVIF-GHDY 288 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~--~~~v~~dl~~~~~lL~pGGvIi-~dD~ 288 (327)
.+.+..++..+. .++++||+|+.-.. |- .......++.+.++|+|||+++ +..+
T Consensus 79 --~v~~~~~d~~~~--~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 79 --NLHTAVVDLNNL--TFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred --cceEEecChhhC--CcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 145555554332 23467999986543 21 1234577899999999999854 4433
No 52
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.00 E-value=5.7e-09 Score=96.91 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=78.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++.+ ..++.++++||+++.|.+.+++. +...+...+ +
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~--~~~~~~v~gvD~S~~ml~~A~~~-------------------~~~~~~~~~---v 111 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNI--HHDNCKIIAIDNSPAMIERCRRH-------------------IDAYKAPTP---V 111 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhc--CCCCCeEEEEeCCHHHHHHHHHH-------------------HHhcCCCCC---e
Confidence 45799999999999999988742 24688999999999999988763 322233223 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +. ..+|+|+.... |-. ......++.+.+.|+|||.+++.|...
T Consensus 112 ~~~~~d~~~~-~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 112 DVIEGDIRDI-AI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred EEEeCChhhC-CC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 7788876653 21 35888886532 211 123467899999999999999988664
No 53
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=5.1e-09 Score=105.27 Aligned_cols=141 Identities=12% Similarity=0.111 Sum_probs=96.3
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..++...+..+|||+|||.|..++.+++. +++.++|+++|+++.+.+.+++ |+..
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~---~~~~~~v~avDi~~~~l~~~~~-------------------n~~~ 297 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAEL---LKNTGKVVALDIHEHKLKLIEE-------------------NAKR 297 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHH---hCCCCEEEEEeCCHHHHHHHHH-------------------HHHH
Confidence 45555555545679999999999999999985 4557899999999988877765 4444
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCCCe
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRPGG 281 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~pGG 281 (327)
.|.. . |.+..+|+.+....+.+.||+|++|+...... ....++.+.++|+|||
T Consensus 298 ~g~~-~---v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG 373 (444)
T PRK14902 298 LGLT-N---IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGG 373 (444)
T ss_pred cCCC-e---EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4442 1 77888887664333346899999997522111 1245888999999999
Q ss_pred EEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEE
Q 041517 282 VIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQ 313 (327)
Q Consensus 282 vIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~ 313 (327)
.++...+...+ ..-...+..|.+.+ .+++.
T Consensus 374 ~lvystcs~~~--~Ene~vv~~~l~~~~~~~~~ 404 (444)
T PRK14902 374 ILVYSTCTIEK--EENEEVIEAFLEEHPEFELV 404 (444)
T ss_pred EEEEEcCCCCh--hhhHHHHHHHHHhCCCcEEe
Confidence 99987766522 11223455555554 35543
No 54
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.99 E-value=1.4e-09 Score=100.28 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=82.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+...+|||||||.|..+..||+. +..|+++|..+...+.|+..+. ..+. .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~-------------------e~gv-----~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHAL-------------------ESGV-----N 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhh-------------------hccc-----c
Confidence 45789999999999999999995 6999999999999999886432 1111 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
++.....+.+ |...+++||+|.+ +--.-.+.+...+..+.+++||||++++..++++
T Consensus 108 i~y~~~~~ed-l~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 108 IDYRQATVED-LASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred ccchhhhHHH-HHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 4444444444 3444589999985 4433356677889999999999999999999873
No 55
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.99 E-value=7.7e-09 Score=98.31 Aligned_cols=122 Identities=15% Similarity=0.043 Sum_probs=84.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||+|||+|..++.+++. .++.+++++|+++.+.+.|++ |+...+..++ +
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~----~~~~~v~avDis~~al~~A~~-------------------n~~~~~~~~~---i 174 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYA----FPEAEVDAVDISPDALAVAEI-------------------NIERHGLEDR---V 174 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---E
Confidence 3579999999999999999984 347899999999999988877 4433344334 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCC-------------CCCc-------------HHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGH-------------DFNS-------------AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h-------------~~~~-------------v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.+..+|..+.++ +.+||+|+.|--. .+++ ...-++.+.++|+|||++++.-.
T Consensus 175 ~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 175 TLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 888888765443 3579999986210 0111 13346788899999999987543
Q ss_pred CCCCCchhHHHHHHHHHHHcCCe
Q 041517 289 FTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 289 ~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
.. . ..+.+.+...++.
T Consensus 253 ~~------~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 253 NS------M-EALEEAYPDVPFT 268 (284)
T ss_pred cC------H-HHHHHHHHhCCCc
Confidence 22 1 3555565655543
No 56
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.99 E-value=3.2e-09 Score=98.27 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=74.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.+.+|||||||+|..+..++.. +.+++++|+++.+.+.+++... . +
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~-------------------~---------~ 87 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA-------------------A---------D 87 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC-------------------C---------C
Confidence 4689999999999998888762 6899999999998887655211 0 2
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+|..+ ++..+++||+|+...... .+.....+.++.+.|+|||++++.....
T Consensus 88 ~~~~~d~~~-~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 88 HYLAGDIES-LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CEEEcCccc-CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 334455433 333356899999875433 2456678999999999999999987664
No 57
>PLN02366 spermidine synthase
Probab=98.97 E-value=7.7e-09 Score=99.51 Aligned_cols=110 Identities=20% Similarity=0.148 Sum_probs=83.9
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
-+|++||+||||.|..+..+++ .+...+|+.||+++.+.+.+++++. .+. .++ +.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk----~~~v~~V~~VEiD~~Vi~~ar~~f~----------------~~~-~~~~dpR-- 146 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIAR----HSSVEQIDICEIDKMVIDVSKKFFP----------------DLA-VGFDDPR-- 146 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHh----CCCCCeEEEEECCHHHHHHHHHhhh----------------hhc-cccCCCc--
Confidence 4689999999999999998887 3446799999999999998887542 111 112 224
Q ss_pred ceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+++..+|+.+.+... +++||+|++|+.....+ ....++.+.++|+|||+++..-
T Consensus 147 -v~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 147 -VNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred -eEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 889999998877665 57899999998654322 2356889999999999998753
No 58
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.97 E-value=2.6e-09 Score=99.10 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=75.3
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++. .++.+|++||+++.+.+.+++... .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~gvD~s~~~i~~a~~~~~-------------------------~--- 77 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVER----WPAARITGIDSSPAMLAEARSRLP-------------------------D--- 77 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhCC-------------------------C---
Confidence 35689999999999999999984 347899999999998887765211 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+..++..+.. ...+||+|+...... .......++.+.+.|+|||++++.
T Consensus 78 ~~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 78 CQFVEADIASWQ--PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CeEEECchhccC--CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 556666654432 235899999886643 345567899999999999999885
No 59
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.97 E-value=1e-08 Score=97.53 Aligned_cols=104 Identities=15% Similarity=0.077 Sum_probs=74.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++.+++ ++ ..+|+++|+++.+.+.++++ +...+..++ +
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~----~g-~~~V~avDid~~al~~a~~n-------------------~~~n~~~~~---~ 211 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK----LG-AAKVVGIDIDPLAVESARKN-------------------AELNQVSDR---L 211 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH----cC-CCeEEEEECCHHHHHHHHHH-------------------HHHcCCCcc---e
Confidence 468999999999999988776 33 46999999999999888763 333333333 3
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++.. ....++||+|+.+... ......+..+.+.|+|||.+++..+..
T Consensus 212 ~~~~~~~~---~~~~~~fDlVvan~~~--~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 212 QVKLIYLE---QPIEGKADVIVANILA--EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred EEEecccc---cccCCCceEEEEecCH--HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 44333311 1224689999987543 334567889999999999999988875
No 60
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.96 E-value=1.2e-08 Score=108.03 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=92.6
Q ss_pred HHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-
Q 041517 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI- 228 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~- 228 (327)
+.+..+.++|||+|||+|.+++++|.. + ..+|++||.++.+.+.+++ |+...++.
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~----G-a~~V~~vD~s~~al~~a~~-------------------N~~~ng~~~ 588 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALG----G-AKSTTTVDMSNTYLEWAER-------------------NFALNGLSG 588 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHH-------------------HHHHhCCCc
Confidence 344456789999999999999999973 2 3479999999999998877 44444443
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCCCC---C---------CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD---F---------NSAWADINRAWRILRPGGVIFGHDYFTAADNRG 296 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~---~---------~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G 296 (327)
++ +++..+|..+.+..++++||+|++|-..- . ......++.+.++|+|||++++..... .
T Consensus 589 ~~---v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-----~ 660 (702)
T PRK11783 589 RQ---HRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-----G 660 (702)
T ss_pred cc---eEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-----c
Confidence 34 89999999887766678999999995310 0 012234667788999999998865543 1
Q ss_pred HHHHHHHHHHHcCCeEEE
Q 041517 297 VRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 297 V~~Av~~f~~~~gl~v~~ 314 (327)
+... ...+...|++++.
T Consensus 661 ~~~~-~~~~~~~g~~~~~ 677 (702)
T PRK11783 661 FKMD-EEGLAKLGLKAEE 677 (702)
T ss_pred CChh-HHHHHhCCCeEEE
Confidence 2222 3344455666554
No 61
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.96 E-value=4.1e-09 Score=94.45 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=77.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|.+++.+|+. .++..++++|.++.+.+.+++ ++...++. + +
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~----~p~~~v~gvD~~~~~l~~a~~-------------------~~~~~~l~-n---i 68 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQ----NPDKNFLGIEIHTPIVLAANN-------------------KANKLGLK-N---L 68 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHH-------------------HHHHhCCC-C---E
Confidence 4579999999999999999984 458899999999998887765 23333332 2 8
Q ss_pred Eeeecchhhhhhhc--CCcEeEEEEcCCCCCCcH---------HHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSA---------WADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v---------~~dl~~~~~lL~pGGvIi~d 286 (327)
++..+++.+.+... ++.+|.|+++-...+... ...++.+.+.|+|||.+++.
T Consensus 69 ~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 69 HVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred EEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 88899988755432 358999999753222111 25689999999999988763
No 62
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.95 E-value=2.4e-09 Score=99.54 Aligned_cols=98 Identities=16% Similarity=0.021 Sum_probs=74.8
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++.+|||||||+|..+..+++. .++.+|+++|+++.|.+.+++. +
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~----~p~~~v~gvD~s~~~~~~a~~~------------------~------------ 73 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARR----WPGAVIEALDSSPEMVAAARER------------------G------------ 73 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHhc------------------C------------
Confidence 35689999999999999999884 3578999999999888766431 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+++..+++.+. . ..++||+|+.... |-.+.....++.+.+.|+|||.+++..
T Consensus 74 ~~~~~~d~~~~-~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 74 VDARTGDVRDW-K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CcEEEcChhhC-C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 45566776543 2 2468999998764 323455678999999999999998853
No 63
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=1.3e-08 Score=102.41 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++...+..+|||+|||+|..|+++++. ++..++|+++|.++.+.+.+++ |+...
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~---~~~~~~V~avD~s~~~l~~~~~-------------------~~~~~ 298 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAEL---MQNRGQITAVDRYPQKLEKIRS-------------------HASAL 298 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHH---hCCCcEEEEEECCHHHHHHHHH-------------------HHHHh
Confidence 3334444445579999999999999999986 3456899999999999887766 44444
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCCCeE
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRPGGV 282 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~pGGv 282 (327)
|.. . |.+..+|+.+..+ +.+||.|++|+-..... ....++.+.++|+|||+
T Consensus 299 g~~-~---v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 299 GIT-I---IETIEGDARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred CCC-e---EEEEeCccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 432 2 7777888766432 36899999995321111 12358899999999999
Q ss_pred EEEEcCCCCCCchhHHHHHHHHHHHc-CCeE
Q 041517 283 IFGHDYFTAADNRGVRRAVNLFAKIN-GLKV 312 (327)
Q Consensus 283 Ii~dD~~~~~~~~GV~~Av~~f~~~~-gl~v 312 (327)
+++..+...+. .=..-|+.|.+.+ ++.+
T Consensus 373 lvystcs~~~~--Ene~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 373 LVYATCSIEPE--ENELQIEAFLQRHPEFSA 401 (445)
T ss_pred EEEEeCCCChh--hHHHHHHHHHHhCCCCEE
Confidence 99999887431 1123345555544 3443
No 64
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=1.2e-08 Score=102.41 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=96.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+++..++...+..+|||+|||.|..|+.|++. ++..++|+++|.++.+.+.+++ |+..
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~---~~~~g~v~a~D~~~~rl~~~~~-------------------n~~r 299 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAEL---MGDQGEIWAVDRSASRLKKLQE-------------------NAQR 299 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHH---hCCCceEEEEcCCHHHHHHHHH-------------------HHHH
Confidence 34444444445679999999999999999985 4557899999999988877665 4444
Q ss_pred hccCCcccceEeeecchhhhhh---hcCCcEeEEEEcCCCCC-------Cc----------------HHHHHHHHHccCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLC---EWGVVGDLIEIDAGHDF-------NS----------------AWADINRAWRILR 278 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~---~l~~~fDLIfIDa~h~~-------~~----------------v~~dl~~~~~lL~ 278 (327)
.|.. .|.+..+|+.+... ...+.||.|++|+..+. +. -.+-++.++++|+
T Consensus 300 ~g~~----~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk 375 (434)
T PRK14901 300 LGLK----SIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK 375 (434)
T ss_pred cCCC----eEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4542 27777888766421 22468999999964221 11 1345889999999
Q ss_pred CCeEEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEE
Q 041517 279 PGGVIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQ 313 (327)
Q Consensus 279 pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~ 313 (327)
|||.|+...+...+ ..-..-|..|++++ ++++.
T Consensus 376 pgG~lvystcsi~~--~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 376 PGGTLVYATCTLHP--AENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred CCCEEEEEeCCCCh--hhHHHHHHHHHHhCCCcEec
Confidence 99999998877633 12234455565554 55544
No 65
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.92 E-value=7.7e-09 Score=97.45 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=81.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
.+|++|||||||.|..+..+++. ++..+++++|+++.+.+.++++.. ... ... ..+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~----~~~~~v~~veid~~vi~~a~~~~~----------------~~~-~~~~~~~-- 127 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKH----KSVEKATLVDIDEKVIELSKKFLP----------------SLA-GSYDDPR-- 127 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhC----CCcceEEEEeCCHHHHHHHHHHhH----------------hhc-ccccCCc--
Confidence 45789999999999998887763 346789999999999888876431 111 001 112
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~d 286 (327)
+++..+|+.+.+....++||+|++|......+ ..+.++.+.++|+|||++++.
T Consensus 128 -v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 128 -VDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred -eEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 67778888887766678999999998633221 346688999999999999986
No 66
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.91 E-value=6.1e-09 Score=84.53 Aligned_cols=102 Identities=20% Similarity=0.107 Sum_probs=77.0
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||+|||+|..++.+++. + ..+++++|+++...+.+++ |+...+..++ +++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~----~-~~~~~gvdi~~~~~~~a~~-------------------~~~~~~~~~~---~~~ 54 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRR----G-AARVTGVDIDPEAVELARR-------------------NLPRNGLDDR---VEV 54 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHH----C-TCEEEEEESSHHHHHHHHH-------------------HCHHCTTTTT---EEE
T ss_pred CEEEEcCcchHHHHHHHHHH----C-CCeEEEEEECHHHHHHHHH-------------------HHHHccCCce---EEE
Confidence 58999999999999999985 3 6899999999998888776 3344444445 889
Q ss_pred eecchhhhhhhc-CCcEeEEEEcCCCCC---------CcHHHHHHHHHccCCCCeEEEE
Q 041517 237 SSGSALTKLCEW-GVVGDLIEIDAGHDF---------NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 237 ~~gda~~~L~~l-~~~fDLIfIDa~h~~---------~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
..+|..+....+ .++||+|+.|-.... ......++.+.++|+|||++++
T Consensus 55 ~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 55 IVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 999988876333 589999999844221 1234568999999999998876
No 67
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3e-09 Score=96.19 Aligned_cols=175 Identities=17% Similarity=0.195 Sum_probs=116.0
Q ss_pred CCCCcCCCccccccccCcCCCChHHHHHHHH---HhhcCC----CCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhh
Q 041517 81 LPPSLLDNFRVTTRCAADSVPPQLVRQTIID---RIFNGT----SPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDK 153 (327)
Q Consensus 81 ~~~~~~d~~~~~~~~~~~~~~~~~v~~~~l~---~~f~~~----s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~ 153 (327)
.+-.-+|+-+ .. ..|..+.+.+++.+ ..|.-. |||.+.|....- ...+....+...+|+.|-..
T Consensus 9 ~n~~LId~L~----~~-~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~----n~~iSAp~mha~~le~L~~~ 79 (237)
T KOG1661|consen 9 DNDDLIDNLR----EN-KIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGY----NLTISAPHMHATALEYLDDH 79 (237)
T ss_pred chHHHHHHHH----hc-chhHHHHHHHHHHhhchhhccccccccCCCCCCccccCC----ceEEcchHHHHHHHHHHHHh
Confidence 3344566666 55 77888888888765 223333 677777755421 11222334567788888666
Q ss_pred cCC-CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 154 VRP-RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 154 ~~p-~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+.| .+.|+||+|+||.+.++|+++ .++++..++||.-++..+.++++.+....+.+. . . .+ ..+ +
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mv--g~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~--~-~---~~-~~~---~-- 145 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMV--GATGGNVHGIEHIPELVEYSKKNLDKDITTSES--S-S---KL-KRG---E-- 145 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHh--cCCCccccchhhhHHHHHHHHHHHHhhccCchh--h-h---hh-ccC---c--
Confidence 655 589999999999999999884 244555599999999888887754322211111 0 0 01 111 1
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+.+..||.....++ ..+||-||+.|+-+..+ +.++..|++||.|++
T Consensus 146 -l~ivvGDgr~g~~e-~a~YDaIhvGAaa~~~p-----q~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 146 -LSIVVGDGRKGYAE-QAPYDAIHVGAAASELP-----QELLDQLKPGGRLLI 191 (237)
T ss_pred -eEEEeCCccccCCc-cCCcceEEEccCccccH-----HHHHHhhccCCeEEE
Confidence 67778888775444 47999999998865544 889999999998877
No 68
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.90 E-value=6.6e-09 Score=100.55 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=78.7
Q ss_pred HHHHHHHhh---cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDK---VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~---~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+++. .+..+|||||||+|+.++.+++. .+..++|+++|.++++.+.|++ +
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~---~~~~g~VvgVDis~~~l~~Ar~-------------------~ 124 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRV---VGEKGLVVSVEYSRKICEIAKR-------------------N 124 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHh---cCCCCEEEEEECCHHHHHHHHH-------------------H
Confidence 344444443 24579999999999999999985 4445789999999999888776 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+...+. ++ +.+..+|+.+.++.. .+||+|++++.... -.+.+.+.|+|||.+++.
T Consensus 125 l~~~g~-~n---V~~i~gD~~~~~~~~-~~fD~Ii~~~g~~~-----ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 125 VRRLGI-EN---VIFVCGDGYYGVPEF-APYDVIFVTVGVDE-----VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred HHHcCC-Cc---EEEEeCChhhccccc-CCccEEEECCchHH-----hHHHHHHhcCCCCEEEEE
Confidence 333333 22 677788876654432 57999999876432 235678899999988774
No 69
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.89 E-value=7.6e-09 Score=98.19 Aligned_cols=102 Identities=16% Similarity=0.053 Sum_probs=72.5
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...++++|||||||+|..++.+++. +.+|+++|.++.+.+.+++. ....++
T Consensus 117 ~~~~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~-------------------~~~~~l---- 167 (287)
T PRK12335 117 QTVKPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEI-------------------AEKENL---- 167 (287)
T ss_pred hccCCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHH-------------------HHHcCC----
Confidence 4457889999999999999999973 67999999999988877652 222222
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCC-C--CCCcHHHHHHHHHccCCCCeEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAG-H--DFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h--~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.+++...|..+. .++++||+|+.-.. | ..+.....++.+.++|+|||++++
T Consensus 168 -~v~~~~~D~~~~--~~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 168 -NIRTGLYDINSA--SIQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred -ceEEEEechhcc--cccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 155555554331 23578999987643 2 112345678999999999998554
No 70
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.89 E-value=3.8e-08 Score=92.54 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=89.7
Q ss_pred HHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 149 NLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 149 ~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
.++...+..+|||+|||.|..|+.+|+. ++..+.|+++|.++.+.+.+++ |+...+..
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~---~~~~g~v~a~D~~~~~l~~~~~-------------------n~~~~g~~ 122 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISAL---MKNEGAIVANEFSKSRTKVLIA-------------------NINRCGVL 122 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHH---cCCCCEEEEEcCCHHHHHHHHH-------------------HHHHcCCC
Confidence 3334334578999999999999999986 4556899999999998877665 44444432
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCC-----------------------cHHHHHHHHHccCCCCeEEEE
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN-----------------------SAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~-----------------------~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.|.+..+|+.+. ......||.|++|+-.... .....|+.++++|+|||+|+.
T Consensus 123 ----~v~~~~~D~~~~-~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 123 ----NVAVTNFDGRVF-GAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred ----cEEEecCCHHHh-hhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 267777777653 3334569999999643321 113468889999999999998
Q ss_pred EcCCCCCCchhHHHHHHHHHHHc
Q 041517 286 HDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 286 dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
..+-..+ ..=.+.++.|.+.+
T Consensus 198 stcs~~~--~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 198 STCSLEP--EENEAVVDYLLEKR 218 (264)
T ss_pred EeCCCCh--HHHHHHHHHHHHhC
Confidence 8776532 11133445555543
No 71
>PRK08317 hypothetical protein; Provisional
Probab=98.89 E-value=1.8e-08 Score=90.78 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=80.0
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+...++.+|||+|||+|..+..+++. .++.++++++|+++.+.+.+++... .....
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~---~~~~~~v~~~d~~~~~~~~a~~~~~---------------------~~~~~ 70 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARR---VGPEGRVVGIDRSEAMLALAKERAA---------------------GLGPN 70 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHHHHhh---------------------CCCCc
Confidence 34445689999999999999999985 4567899999999988877665210 01111
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+ ++..+..||+|+..... ........++.+.+.|+|||.|++.++.+
T Consensus 71 ---~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 71 ---VEFVRGDADG-LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred ---eEEEeccccc-CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 6666665443 22224789999987543 22445678999999999999999887653
No 72
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.88 E-value=2.3e-09 Score=85.55 Aligned_cols=97 Identities=24% Similarity=0.185 Sum_probs=68.4
Q ss_pred EEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeee
Q 041517 159 IIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSS 238 (327)
Q Consensus 159 VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~ 238 (327)
|||+|||+|..+..+++.+ ..++..+++++|+++.+.+.+++... ..+. ++++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~-------------------~~~~-----~~~~~~ 55 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFS-------------------EDGP-----KVRFVQ 55 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSH-------------------HTTT-----TSEEEE
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhch-------------------hcCC-----ceEEEE
Confidence 7999999999999999964 22445899999999999988876431 1122 278888
Q ss_pred cchhhhhhhcCCcEeEEEE-cC--CCCC-CcHHHHHHHHHccCCCCe
Q 041517 239 GSALTKLCEWGVVGDLIEI-DA--GHDF-NSAWADINRAWRILRPGG 281 (327)
Q Consensus 239 gda~~~L~~l~~~fDLIfI-Da--~h~~-~~v~~dl~~~~~lL~pGG 281 (327)
+|..+ ++..+++||+|+. .. .|-. +.....++.+.++|+|||
T Consensus 56 ~D~~~-l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 56 ADARD-LPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SCTTC-HHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHhH-CcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 88876 5666789999999 44 2311 335667899999999998
No 73
>PRK03612 spermidine synthase; Provisional
Probab=98.87 E-value=3.7e-08 Score=101.08 Aligned_cols=136 Identities=15% Similarity=0.058 Sum_probs=92.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-Cccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI-DSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~-~~v~ 232 (327)
.++++||+||||.|..+..+++ .+...++++||+++++.+.++++... ..+...... .+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~----~~~v~~v~~VEid~~vi~~ar~~~~l--------------~~~~~~~~~dpr-- 355 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK----YPDVEQVTLVDLDPAMTELARTSPAL--------------RALNGGALDDPR-- 355 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh----CCCcCeEEEEECCHHHHHHHHhCCcc--------------hhhhccccCCCc--
Confidence 4689999999999999988886 24347999999999999998874211 111111111 23
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
+++..+|+.+.+...+++||+|++|......+ ..+.++.+.++|+|||++++........ +..-..+.+.++
T Consensus 356 -v~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~-~~~~~~i~~~l~ 433 (521)
T PRK03612 356 -VTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA-PKAFWSIEATLE 433 (521)
T ss_pred -eEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc-hHHHHHHHHHHH
Confidence 88889999988776678999999997543321 1246789999999999999865432111 222233444445
Q ss_pred HcCCe
Q 041517 307 INGLK 311 (327)
Q Consensus 307 ~~gl~ 311 (327)
+.|+.
T Consensus 434 ~~gf~ 438 (521)
T PRK03612 434 AAGLA 438 (521)
T ss_pred HcCCE
Confidence 55553
No 74
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.87 E-value=2.3e-08 Score=100.09 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=84.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+++..++...+..+|||+|||.|..|+.+++. ++ .++|+++|.++.+.+.+++ |+..
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~---~~-~~~v~a~D~~~~~l~~~~~-------------------n~~r 284 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILEL---AP-QAQVVALDIHEHRLKRVYE-------------------NLKR 284 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHH---cC-CCeEEEEeCCHHHHHHHHH-------------------HHHH
Confidence 34444444445689999999999999999985 34 7899999999998887765 4444
Q ss_pred hccCCcccceEeeecchhhhhhh-cCCcEeEEEEcCCCCC-------Cc----------------HHHHHHHHHccCCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCE-WGVVGDLIEIDAGHDF-------NS----------------AWADINRAWRILRPG 280 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~-l~~~fDLIfIDa~h~~-------~~----------------v~~dl~~~~~lL~pG 280 (327)
.|... .+.+..+++...... ..++||.|++|+.-.. +. ...-|+.++++|+||
T Consensus 285 ~g~~~---~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 285 LGLTI---KAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred cCCCe---EEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44431 144455554332110 2467999999964221 11 135688999999999
Q ss_pred eEEEEEcCCCC
Q 041517 281 GVIFGHDYFTA 291 (327)
Q Consensus 281 GvIi~dD~~~~ 291 (327)
|.++...+-..
T Consensus 362 G~lvystcs~~ 372 (426)
T TIGR00563 362 GTLVYATCSVL 372 (426)
T ss_pred cEEEEEeCCCC
Confidence 99999988773
No 75
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.87 E-value=3.3e-09 Score=84.07 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=56.6
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
||||||+|..+..+++. . +..+++++|+++.+.+.+++... ..+. .....+.+...
T Consensus 1 LdiGcG~G~~~~~l~~~---~-~~~~~~~~D~s~~~l~~a~~~~~-------------------~~~~-~~~~~~~~~~~ 56 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE---L-PDARYTGVDISPSMLERARERLA-------------------ELGN-DNFERLRFDVL 56 (99)
T ss_dssp -EESTTTS-TTTTHHHH---C--EEEEEEEESSSSTTSTTCCCHH-------------------HCT----EEEEE--SS
T ss_pred CEeCccChHHHHHHHHh---C-CCCEEEEEECCHHHHHHHHHHhh-------------------hcCC-cceeEEEeecC
Confidence 79999999999999985 2 68999999999999987766321 1010 00001333222
Q ss_pred chhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEE
Q 041517 240 SALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVI 283 (327)
Q Consensus 240 da~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvI 283 (327)
+..+. ...++||+|+.- .-|..+.....++.+.++|+|||+|
T Consensus 57 ~~~~~--~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 57 DLFDY--DPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---C--CC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred Chhhc--ccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 22211 112589999954 4444467778899999999999986
No 76
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.87 E-value=2.7e-08 Score=88.90 Aligned_cols=136 Identities=21% Similarity=0.210 Sum_probs=101.3
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
..+++|+-..+|..|+|+|+-.|.|+++.|..+...|...+|+++|++-.-.+.+-. .
T Consensus 59 ~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-------------------e--- 116 (237)
T COG3510 59 WNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-------------------E--- 116 (237)
T ss_pred HHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-------------------c---
Confidence 467788888899999999999999999999998888888999999997543221110 0
Q ss_pred hccCCcccceEeeecchhhh--------hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC----C
Q 041517 225 QNAIDSVLPVPFSSGSALTK--------LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA----A 292 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~--------L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~----~ 292 (327)
+..|.|..|++.+. ++....++ ||..|++|..+.+++.++.+.|+|.-|-++++-|.+-+ +
T Consensus 117 ------~p~i~f~egss~dpai~eqi~~~~~~y~kI-fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~ 189 (237)
T COG3510 117 ------VPDILFIEGSSTDPAIAEQIRRLKNEYPKI-FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGP 189 (237)
T ss_pred ------CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE-EEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCc
Confidence 01155665554331 11112344 88899999999999999999999999999998887652 1
Q ss_pred Cc-----hhHHHHHHHHHHHcC
Q 041517 293 DN-----RGVRRAVNLFAKING 309 (327)
Q Consensus 293 ~~-----~GV~~Av~~f~~~~g 309 (327)
.. .|.++||.++.++.+
T Consensus 190 ~~p~~~g~gP~~AVe~ylr~~p 211 (237)
T COG3510 190 VLPWRFGGGPYEAVEAYLREFP 211 (237)
T ss_pred ccchhcCCChHHHHHHHHHhCC
Confidence 22 258999999988765
No 77
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.87 E-value=2.2e-08 Score=101.08 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=79.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.++.. . +.+++++|+++.+.+.|++. .. +...+ +
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~---~--~~~v~gvDiS~~~l~~A~~~-------------------~~--~~~~~---v 316 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAEN---F--DVHVVGIDLSVNMISFALER-------------------AI--GRKCS---V 316 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHh---c--CCEEEEEECCHHHHHHHHHH-------------------hh--cCCCc---e
Confidence 4679999999999999999874 2 67999999999988877652 11 12122 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
.+..++..+. +..+++||+|+.... +........++++.+.|+|||.+++.|+...
T Consensus 317 ~~~~~d~~~~-~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 317 EFEVADCTKK-TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EEEEcCcccC-CCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 7777776542 222468999998643 3234566889999999999999999988753
No 78
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.86 E-value=4.4e-08 Score=88.76 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=79.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .+...+++++|.++.+.+.+++... ..+.... +
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~~-------------------~~~~~~~---~ 105 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKA---VGKTGEVVGLDFSEGMLAVGREKLR-------------------DLGLSGN---V 105 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHH---cCCCCeEEEEeCCHHHHHHHHHhhc-------------------ccccccC---e
Confidence 4579999999999999999985 3346899999999988887766321 1111112 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +...+.||+|++... |........++.+.+.|+|||++++-+...
T Consensus 106 ~~~~~d~~~~-~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 106 EFVQGDAEAL-PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred EEEecccccC-CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 6666666542 222468999998643 445566788999999999999998876543
No 79
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=3.6e-08 Score=94.84 Aligned_cols=119 Identities=15% Similarity=0.029 Sum_probs=83.2
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||+|||+|..++.++.. .++.+++++|+++.+.+.|++ |+...+..++ |.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~----~p~~~V~avDis~~al~~A~~-------------------n~~~~~l~~~---i~~ 188 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA----FPDAEVDAVDISPDALAVAEI-------------------NIERHGLEDR---VTL 188 (307)
T ss_pred CEEEEEechhhHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHhCCCCc---EEE
Confidence 78999999999999999984 347899999999999998877 4433344344 788
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCC-------------CCCc-------------HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGH-------------DFNS-------------AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h-------------~~~~-------------v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+|..+.++ +.+||+|+.+--. .+++ ...-++.+.++|+|||.+++. +..
T Consensus 189 ~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E-~g~ 265 (307)
T PRK11805 189 IESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE-VGN 265 (307)
T ss_pred EECchhhhCC--CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE-ECc
Confidence 8888766543 3579999986210 0111 234578888999999999985 332
Q ss_pred CCCchhHHHHHHHHHHHcCC
Q 041517 291 AADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~~~gl 310 (327)
+ .. .+.+.+...++
T Consensus 266 ~-----~~-~~~~~~~~~~~ 279 (307)
T PRK11805 266 S-----RV-HLEEAYPDVPF 279 (307)
T ss_pred C-----HH-HHHHHHhhCCC
Confidence 1 12 35555555554
No 80
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.86 E-value=2.6e-08 Score=90.05 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=77.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. .+..+++++|.++.+...+++.. . .+ +
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~-------------------~-----~~---~ 82 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKR----FPQAEFIALDISAGMLAQAKTKL-------------------S-----EN---V 82 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHh----CCCCcEEEEeChHHHHHHHHHhc-------------------C-----CC---C
Confidence 4679999999999999999884 45778999999988776554421 0 11 5
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +..+++||+|+...... .......++.+.+.|+|||++++.....
T Consensus 83 ~~~~~d~~~~-~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 83 QFICGDAEKL-PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred eEEecchhhC-CCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 5666665543 33357899999876432 2355678999999999999999987655
No 81
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.85 E-value=1.6e-08 Score=97.78 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=75.1
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.++|||||||+|+.++.|+.. + ...|++||+++.+...++. .++. .+...+
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~----g-~~~V~GiD~S~~~l~q~~a-----------------~~~~--~~~~~~-- 173 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGA----G-AKLVVGIDPSQLFLCQFEA-----------------VRKL--LGNDQR-- 173 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc----C-CCEEEEEcCCHHHHHHHHH-----------------HHHh--cCCCCC--
Confidence 345789999999999999999884 3 3469999998776542211 0011 111112
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcC-CCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+..++..+ ++. +..||+|+.-+ -|-.......++.+.+.|+|||.++++++.
T Consensus 174 -i~~~~~d~e~-lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 174 -AHLLPLGIEQ-LPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred -eEEEeCCHHH-CCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 7777776554 344 67899999743 332355678899999999999999988654
No 82
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.84 E-value=6.9e-08 Score=88.17 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=78.6
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++.......+..+|||||||+|..+..+++. +.+++++|.++++.+.+++. +...
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~-------------------~~~~ 93 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLH-------------------ALES 93 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHH-------------------HHHc
Confidence 3333333445679999999999999988873 46899999999887766542 2111
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+. .+.+..++..+.....++.||+|++.... ........++.+.+.|+|||++++.+..
T Consensus 94 ~~-----~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 94 GL-----KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CC-----ceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 21 15566666555433345789999886432 1234456789999999999999987653
No 83
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=2.4e-08 Score=94.64 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=82.1
Q ss_pred HHHHHHhh---cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDK---VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~---~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
-+..+++. .+..+|||||||.|..++.+|+. . +.+|++++++++..+.+++ .+
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~---y--~v~V~GvTlS~~Q~~~~~~-------------------r~ 115 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE---Y--GVTVVGVTLSEEQLAYAEK-------------------RI 115 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHH---c--CCEEEEeeCCHHHHHHHHH-------------------HH
Confidence 34444443 34679999999999999999984 2 7999999999988877765 34
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC---CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD---FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~---~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...|+.++ |++...|= +...++||-|..=+..+ .+....+++.+.+.|+|||++++|++..
T Consensus 116 ~~~gl~~~---v~v~l~d~----rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 116 AARGLEDN---VEVRLQDY----RDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred HHcCCCcc---cEEEeccc----cccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 45566544 55543332 33356799988543322 1224478999999999999999999986
No 84
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.81 E-value=5.7e-08 Score=92.15 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=82.8
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||+|||+|..++.++.. .++.+++++|+++.+.+.+++ |+...+..++ +.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~----~~~~~v~avDis~~al~~a~~-------------------n~~~~~~~~~---v~~ 169 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE----FPNAEVIAVDISPDALAVAEE-------------------NAEKNQLEHR---VEF 169 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---EEE
Confidence 68999999999999999985 346899999999999988876 4433344333 778
Q ss_pred eecchhhhhhhcCCcEeEEEEcCC-------------CCCC-------------cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAG-------------HDFN-------------SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~-------------h~~~-------------~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..++..+.++ +.+||+|+.+-- ..++ .....++.+.++|+|||++++.-..+
T Consensus 170 ~~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 170 IQSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred EECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 8887665432 237999997510 0111 13345778888999999998854443
Q ss_pred CCCchhHHHHHHHHHH-HcCC
Q 041517 291 AADNRGVRRAVNLFAK-INGL 310 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~-~~gl 310 (327)
-..++.++.. ..++
T Consensus 248 ------q~~~~~~~~~~~~~~ 262 (284)
T TIGR00536 248 ------QQKSLKELLRIKFTW 262 (284)
T ss_pred ------HHHHHHHHHHhcCCC
Confidence 2445666555 3443
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=98.81 E-value=9.8e-08 Score=83.56 Aligned_cols=130 Identities=16% Similarity=0.076 Sum_probs=83.4
Q ss_pred HHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC
Q 041517 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID 229 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~ 229 (327)
.+...+.++|||+|||+|..+..+++. +.+++++|.++.+.+.+++. +...+..+
T Consensus 18 ~~~~~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~-------------------~~~~~~~~ 72 (188)
T PRK14968 18 NAVDKKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCN-------------------AKLNNIRN 72 (188)
T ss_pred hhhccCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHH-------------------HHHcCCCC
Confidence 333456789999999999999999873 68999999999988877653 22222221
Q ss_pred cccceEeeecchhhhhhhcCCcEeEEEEcCCCCC----------------------CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 230 SVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF----------------------NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 230 ~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~----------------------~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+ .+.+..++..+.+. ...||+|+.+..... ......++.+.++|+|||.+++--
T Consensus 73 ~--~~~~~~~d~~~~~~--~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 73 N--GVEVIRSDLFEPFR--GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred c--ceEEEecccccccc--ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 1 14555666555332 247999987643210 002345789999999999776643
Q ss_pred CCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 288 YFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 288 ~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
... .+ .+.+..++.+.|+++.
T Consensus 149 ~~~----~~-~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 149 SSL----TG-EDEVLEYLEKLGFEAE 169 (188)
T ss_pred ccc----CC-HHHHHHHHHHCCCeee
Confidence 222 12 2345566677787754
No 86
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.81 E-value=1.8e-08 Score=85.48 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=74.0
Q ss_pred HHHHHHHh-hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLID-KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~-~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.++..+.. ..+..+|||||||.|..+..|+.. +.+++++|+++.+.+. . +
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~--~-------------------~-- 61 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK--R-------------------N-- 61 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH--T-------------------T--
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh--h-------------------h--
Confidence 35555554 446789999999999999998763 4599999998876543 1 0
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.....+..+ ....++.||+|+.-.. +........++.+.++|+|||++++.+...
T Consensus 62 ----------~~~~~~~~~~-~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 62 ----------VVFDNFDAQD-PPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ----------SEEEEEECHT-HHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ----------hhhhhhhhhh-hhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1111111111 1223579999996543 434567889999999999999999998874
No 87
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.80 E-value=7.3e-08 Score=95.20 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
.++|||+|||+|..++.+++. .+..+|+++|.++.+.+.++++. ...+... ...++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~----~P~~~V~~vD~S~~Av~~A~~N~-------------------~~n~~~~-~~~v~ 284 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDK----NPQAKVVFVDESPMAVASSRLNV-------------------ETNMPEA-LDRCE 284 (378)
T ss_pred CCeEEEEeccccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHH-------------------HHcCccc-CceEE
Confidence 469999999999999999984 56889999999999988887633 2212110 11267
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCC-CCC-----CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAG-HDF-----NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~-h~~-----~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
+..++..+.+. +.+||+|+.+-. |.. +..++-++.+.+.|+|||.+.+.- .. .-+....+++.+. +
T Consensus 285 ~~~~D~l~~~~--~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~-nr---~l~y~~~L~~~fg--~ 356 (378)
T PRK15001 285 FMINNALSGVE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA-NR---HLDYFHKLKKIFG--N 356 (378)
T ss_pred EEEccccccCC--CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE-ec---CcCHHHHHHHHcC--C
Confidence 77776654332 358999999733 221 224566888999999999777653 22 1234444444332 3
Q ss_pred CeEEEccceEEEeccc
Q 041517 310 LKVQIDGQHWVIHSAV 325 (327)
Q Consensus 310 l~v~~~gq~w~i~~~~ 325 (327)
.++.-...+++|.+++
T Consensus 357 ~~~va~~~kf~vl~a~ 372 (378)
T PRK15001 357 CTTIATNNKFVVLKAV 372 (378)
T ss_pred ceEEccCCCEEEEEEE
Confidence 4444455566666554
No 88
>PLN02823 spermine synthase
Probab=98.80 E-value=3.1e-08 Score=96.39 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=82.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
.+|++||.||+|.|.++..+++ .++..+|++||+++...+.+++++... ..++ ..+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~----~~~~~~v~~VEiD~~vv~lar~~~~~~-----------------~~~~~dpr-- 158 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLR----HKTVEKVVMCDIDQEVVDFCRKHLTVN-----------------REAFCDKR-- 158 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHh----CCCCCeEEEEECCHHHHHHHHHhcccc-----------------cccccCCc--
Confidence 3689999999999999988876 344678999999999999998865310 0011 223
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCC---Cc----HHHHHH-HHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NS----AWADIN-RAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~----v~~dl~-~~~~lL~pGGvIi~d 286 (327)
+++..+|+.+.|...+++||+|++|..... .+ ..+.++ .+.++|+|||++++.
T Consensus 159 -v~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 159 -LELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred -eEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 889999999988776789999999964321 11 235676 789999999999875
No 89
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.80 E-value=1.1e-07 Score=87.20 Aligned_cols=135 Identities=21% Similarity=0.202 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 142 SYGAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 142 ~~g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
.+..++..+.+.. .+.+|||+|||+|..++.++.. .++.+++++|.++.+.+.+++
T Consensus 72 ~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~----~~~~~v~~iD~~~~~~~~a~~------------------ 129 (251)
T TIGR03534 72 DTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKE----RPDARVTAVDISPEALAVARK------------------ 129 (251)
T ss_pred ChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH------------------
Confidence 3344555554443 3469999999999999999984 346799999999998887766
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC--------------CCc-------------HHHHHHH
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD--------------FNS-------------AWADINR 272 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~--------------~~~-------------v~~dl~~ 272 (327)
|+...+.. + +.+..++..+.++ .++||+|+.+-... +++ ...-++.
T Consensus 130 -~~~~~~~~-~---~~~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~ 202 (251)
T TIGR03534 130 -NAARLGLD-N---VTFLQSDWFEPLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ 202 (251)
T ss_pred -HHHHcCCC-e---EEEEECchhccCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH
Confidence 33322331 2 7777887766432 47899999853210 000 1234678
Q ss_pred HHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 273 AWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 273 ~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+.+.|+|||++++..-.. -.+.+.+++.+.|++
T Consensus 203 ~~~~L~~gG~~~~~~~~~------~~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 203 APRLLKPGGWLLLEIGYD------QGEAVRALFEAAGFA 235 (251)
T ss_pred HHHhcccCCEEEEEECcc------HHHHHHHHHHhCCCC
Confidence 899999999998853221 134556666667764
No 90
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.80 E-value=6.8e-08 Score=95.61 Aligned_cols=142 Identities=18% Similarity=0.119 Sum_probs=100.7
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCc-EEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDS-QILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~-~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.-..+.+..+.++||.+=|+||.++++.|.+ +. ++++||.+....+.|++ |+..
T Consensus 208 ~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~-------------------N~~L 262 (393)
T COG1092 208 NRRALGELAAGKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARE-------------------NAEL 262 (393)
T ss_pred HHHHHhhhccCCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHH-------------------HHHh
Confidence 3344555566889999999999999999985 55 99999999999998887 5555
Q ss_pred hccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCC------CCCCcHH----HHHHHHHccCCCCeEEEEEcCCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAG------HDFNSAW----ADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~------h~~~~v~----~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
.|+... +++++.+|+.+.|... +.+||+|++|-- .....+. .-+..+.++|+|||++++-.+...
T Consensus 263 Ng~~~~--~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 263 NGLDGD--RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred cCCCcc--ceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 555322 2889999999988765 459999999932 1111122 235678999999999999888764
Q ss_pred CCchhHHHHHHHHHHHcCCeEEE
Q 041517 292 ADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 292 ~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
..-..-.+.+.+-+...+..++.
T Consensus 341 ~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 341 FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred cCHHHHHHHHHHHHHhcCCcEEE
Confidence 33333445555555555555443
No 91
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.80 E-value=2.2e-08 Score=94.81 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 143 YGAVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 143 ~g~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
|...+..+++.+ +..+|||||||.|..++.+|+. . +.+|++|.+++...+.+++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~---~--g~~v~gitlS~~Q~~~a~~------------------ 103 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER---Y--GCHVTGITLSEEQAEYARE------------------ 103 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH---H----EEEEEES-HHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH---c--CcEEEEEECCHHHHHHHHH------------------
Confidence 334566666654 3578999999999999999994 2 6899999998877666654
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+...|+.++ +.+...|-.+ +..+||-|+.=+..+. ......++.+.++|+|||+++++.+..
T Consensus 104 -~~~~~gl~~~---v~v~~~D~~~----~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 104 -RIREAGLEDR---VEVRLQDYRD----LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp -HHHCSTSSST---EEEEES-GGG-------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred -HHHhcCCCCc---eEEEEeeccc----cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 4455566666 7777776544 3458999874322211 223478999999999999999998765
No 92
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.80 E-value=1.1e-07 Score=85.34 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=77.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||+|||.|..+..+++. .+...+++++|+++.+.+.+++. .. ...+ +
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~---~~~~~~~~~iD~~~~~~~~~~~~-------------------~~---~~~~---i 90 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKS---APDRGKVTGVDFSSEMLEVAKKK-------------------SE---LPLN---I 90 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHh---cCCCceEEEEECCHHHHHHHHHH-------------------hc---cCCC---c
Confidence 5789999999999999999985 34347999999998877655442 11 1112 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +...++||+|++.. .|........++.+.++|+|||.+++.++..
T Consensus 91 ~~~~~d~~~~-~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 91 EFIQADAEAL-PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eEEecchhcC-CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 6666766553 22246899998753 3445566788999999999999999877643
No 93
>PRK14967 putative methyltransferase; Provisional
Probab=98.80 E-value=1.4e-07 Score=86.14 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=83.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||+|..++.+++. + ..+++++|.++.+.+.+++ |+...+. .+.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~----~-~~~v~~vD~s~~~l~~a~~-------------------n~~~~~~-----~~~ 87 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA----G-AGSVTAVDISRRAVRSARL-------------------NALLAGV-----DVD 87 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc----C-CCeEEEEECCHHHHHHHHH-------------------HHHHhCC-----eeE
Confidence 469999999999999998873 2 3599999999998887765 3333232 156
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCC----------------------cHHHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFN----------------------SAWADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~----------------------~v~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
+..++..+.++ +..||+|+.+...... .....++.+.++|+|||++++-.-..
T Consensus 88 ~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--- 162 (223)
T PRK14967 88 VRRGDWARAVE--FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--- 162 (223)
T ss_pred EEECchhhhcc--CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc---
Confidence 66777665432 4689999998421110 01234677889999999988732221
Q ss_pred chhHHHHHHHHHHHcCCeEEEccceEE
Q 041517 294 NRGVRRAVNLFAKINGLKVQIDGQHWV 320 (327)
Q Consensus 294 ~~GV~~Av~~f~~~~gl~v~~~gq~w~ 320 (327)
....++++.+ +..++.+.....+|+
T Consensus 163 -~~~~~~~~~l-~~~g~~~~~~~~~~~ 187 (223)
T PRK14967 163 -SGVERTLTRL-SEAGLDAEVVASQWI 187 (223)
T ss_pred -cCHHHHHHHH-HHCCCCeEEEEeecc
Confidence 1234444444 556776665544443
No 94
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.79 E-value=6.8e-08 Score=87.61 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=71.5
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++.+|||||||+|..+..+++. + ++.++++||+++.+.+.|++... +
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~---~-~~~~v~giDiS~~~l~~A~~~~~----------------~------------ 89 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRL---L-PFKHIYGVEINEYAVEKAKAYLP----------------N------------ 89 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHh---C-CCCeEEEEECCHHHHHHHHhhCC----------------C------------
Confidence 35678999999999999999874 2 47899999999999987765211 0
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+ +..+++||+|+..+...+ ......++++.+.+ ++++++.++..
T Consensus 90 ~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 90 INIIQGSLFD--PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred CcEEEeeccC--CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 3445555544 333578999998775322 22456677778876 56777777754
No 95
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.79 E-value=2.3e-08 Score=93.21 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=92.0
Q ss_pred CchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 140 WGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 140 w~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
++..+.+|..++.....++|||+|||+|..++.+|.- .. ..+|++||+.+.+.++|++
T Consensus 29 ~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r---~~-~a~I~~VEiq~~~a~~A~~------------------ 86 (248)
T COG4123 29 YGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQR---TE-KAKIVGVEIQEEAAEMAQR------------------ 86 (248)
T ss_pred cccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhcc---CC-CCcEEEEEeCHHHHHHHHH------------------
Confidence 3677889999988878999999999999999999972 33 5999999999999999877
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcC-CcEeEEEEcCC------------------CCCCc-HHHHHHHHHccCCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWG-VVGDLIEIDAG------------------HDFNS-AWADINRAWRILRP 279 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~-~~fDLIfIDa~------------------h~~~~-v~~dl~~~~~lL~p 279 (327)
|+...++.++ |.+..+|..+..+... .+||+|+..-- |+-.. ..+-++.+..+|+|
T Consensus 87 -nv~ln~l~~r---i~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~ 162 (248)
T COG4123 87 -NVALNPLEER---IQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP 162 (248)
T ss_pred -HHHhCcchhc---eeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC
Confidence 5666666667 8898998877665544 45999986411 11111 12335677889999
Q ss_pred CeEEEE
Q 041517 280 GGVIFG 285 (327)
Q Consensus 280 GGvIi~ 285 (327)
||.+.+
T Consensus 163 ~G~l~~ 168 (248)
T COG4123 163 GGRLAF 168 (248)
T ss_pred CCEEEE
Confidence 998887
No 96
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.78 E-value=6.9e-08 Score=92.21 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=79.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..++.+++. .|+.+++++|. +++.+.+++ |+...++.++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~----~p~~~~~~~D~-~~~~~~a~~-------------------~~~~~gl~~r--- 200 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH----FPELDSTILNL-PGAIDLVNE-------------------NAAEKGVADR--- 200 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH----CCCCEEEEEec-HHHHHHHHH-------------------HHHhCCccce---
Confidence 34689999999999999999985 45789999997 566666554 4555566566
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcC-CCCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDA-GHDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
|++..+|..+. .+ ..+|+|++-. .|.+.+ ....++.+.+.|+|||.+++.|+.+
T Consensus 201 v~~~~~d~~~~--~~-~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 201 MRGIAVDIYKE--SY-PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EEEEecCccCC--CC-CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 88888886542 12 2369887653 454433 3467999999999999999999866
No 97
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=8.9e-08 Score=95.93 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=90.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++...+..+|||+|||+|..++.+++. . ++++|+++|.++.+.+.+++ |+...
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~---~-~~~~v~a~D~s~~~l~~~~~-------------------n~~~~ 291 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILEL---A-PQAQVVALDIDAQRLERVRE-------------------NLQRL 291 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHH---c-CCCEEEEEeCCHHHHHHHHH-------------------HHHHc
Confidence 3344444445679999999999999999985 2 34899999999998887765 44333
Q ss_pred ccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCC--------------c---------HHHHHHHHHccCCCCe
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFN--------------S---------AWADINRAWRILRPGG 281 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~--------------~---------v~~dl~~~~~lL~pGG 281 (327)
|.. +.+..+|+.+..... +.+||.|++|+.-... . ....++.+.++|+|||
T Consensus 292 g~~-----~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG 366 (427)
T PRK10901 292 GLK-----ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGG 366 (427)
T ss_pred CCC-----eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 431 556677765532211 4679999999742210 0 1246889999999999
Q ss_pred EEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEE
Q 041517 282 VIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQ 313 (327)
Q Consensus 282 vIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~ 313 (327)
.++.-.+...+. .+. .-+..|.+.+ ++++.
T Consensus 367 ~lvystcs~~~~-Ene-~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 367 TLLYATCSILPE-ENE-QQIKAFLARHPDAELL 397 (427)
T ss_pred EEEEEeCCCChh-hCH-HHHHHHHHhCCCCEEe
Confidence 999888765321 112 3444555443 45543
No 98
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.76 E-value=8.3e-09 Score=93.82 Aligned_cols=103 Identities=21% Similarity=0.099 Sum_probs=79.0
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+.+|+|+|||.|-||-.+++- -|+..|++||.++.|.+.|++.. .
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~R----wP~A~i~GiDsS~~Mla~Aa~rl----------------------------p 75 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARR----WPDAVITGIDSSPAMLAKAAQRL----------------------------P 75 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHh----CCCCeEeeccCCHHHHHHHHHhC----------------------------C
Confidence 446899999999999999999983 45999999999999998775421 1
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCC-CcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.++|..+|..+.-+ ..+.|+||..+...+ ++.-+-|..++..|.|||+|.+.=-.
T Consensus 76 ~~~f~~aDl~~w~p--~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 76 DATFEEADLRTWKP--EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred CCceecccHhhcCC--CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 15565666444212 368999999987655 44457789999999999999986433
No 99
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.76 E-value=3.3e-08 Score=89.00 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=99.4
Q ss_pred HHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHH---HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCC
Q 041517 106 RQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGA---VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGL 182 (327)
Q Consensus 106 ~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~---lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~ 182 (327)
...++++.+...+||.-.. .|.++.+ +|...+..-+-++++|+||+.|..|..||..
T Consensus 5 ~~~~l~~~la~~DPW~~~~--------------~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r------ 64 (201)
T PF05401_consen 5 NYQLLNRELANDDPWGFET--------------SWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR------ 64 (201)
T ss_dssp HHHHHHHHHTSSSGGGTTT---------------HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG------
T ss_pred HHHHHHHHhCCCCCCCCCC--------------CHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh------
Confidence 4556777776666654332 3445433 3332122223478999999999999999985
Q ss_pred CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC
Q 041517 183 DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD 262 (327)
Q Consensus 183 ~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~ 262 (327)
-.+++++|+++...+.|++. +. +. . .|++...+-.+..+ .+.||||++-.-..
T Consensus 65 Cd~LlavDis~~Al~~Ar~R-------------------l~--~~-~---~V~~~~~dvp~~~P--~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 65 CDRLLAVDISPRALARARER-------------------LA--GL-P---HVEWIQADVPEFWP--EGRFDLIVLSEVLY 117 (201)
T ss_dssp EEEEEEEES-HHHHHHHHHH-------------------TT--T--S---SEEEEES-TTT-----SS-EEEEEEES-GG
T ss_pred hCceEEEeCCHHHHHHHHHh-------------------cC--CC-C---CeEEEECcCCCCCC--CCCeeEEEEehHhH
Confidence 46899999999888877652 11 11 1 17887777655433 48999999875443
Q ss_pred CC----cHHHHHHHHHccCCCCeEEEEEcCCCC-----CCchhHHHHHHHHHHHcCCeEE-------EccceEEEec
Q 041517 263 FN----SAWADINRAWRILRPGGVIFGHDYFTA-----ADNRGVRRAVNLFAKINGLKVQ-------IDGQHWVIHS 323 (327)
Q Consensus 263 ~~----~v~~dl~~~~~lL~pGGvIi~dD~~~~-----~~~~GV~~Av~~f~~~~gl~v~-------~~gq~w~i~~ 323 (327)
|- .....++.+...|+|||.+|+-.+... ...-|. +.+.+++++.=.+|. ..++.|+|-+
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga-~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGA-ETVLEMLQEHLTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--H-HHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccch-HHHHHHHHHHhhheeEEEEcCCCCCCceEeee
Confidence 32 234467888999999999998777541 122244 445555555433333 2566676643
No 100
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.76 E-value=1.1e-07 Score=85.99 Aligned_cols=116 Identities=16% Similarity=0.022 Sum_probs=78.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+.......+|||+|||+|..++.++.. + ..+|++||.++...+.+++ |+...
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr----~-a~~V~~vE~~~~a~~~a~~-------------------Nl~~~ 99 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSR----Y-AAGATLLEMDRAVAQQLIK-------------------NLATL 99 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHc----C-CCEEEEEECCHHHHHHHHH-------------------HHHHh
Confidence 4555544345679999999999999864431 2 4699999999988877765 44443
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHc--cCCCCeEEEEEcCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWR--ILRPGGVIFGHDYF 289 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~--lL~pGGvIi~dD~~ 289 (327)
+.. + +.+..+|..+.++....+||+||+|--....-....++.+.+ +|+|+++|++.-..
T Consensus 100 ~~~-~---v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 100 KAG-N---ARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC-c---EEEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 432 2 788889988766544567999999976322222233444433 47999999887444
No 101
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.74 E-value=1.4e-07 Score=92.04 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=75.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..++.+++. . ++.+++++|.++++.+.+++.. .. .. +
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~---~-~~~~VtgVD~S~~mL~~A~~k~-------------------~~----~~---i 162 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKH---V-DAKNVTILDQSPHQLAKAKQKE-------------------PL----KE---C 162 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHH---C-CCCEEEEEECCHHHHHHHHHhh-------------------hc----cC---C
Confidence 3569999999999999998874 3 3579999999999888776521 10 11 5
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
++..++..+ ++..++.||+|+.... |........++++.+.|+|||.+++-+
T Consensus 163 ~~i~gD~e~-lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 163 KIIEGDAED-LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred eEEeccHHh-CCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 667777655 3433578999987543 334556678999999999999987643
No 102
>PTZ00146 fibrillarin; Provisional
Probab=98.73 E-value=1.3e-07 Score=90.07 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=69.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+||++|+.+..+|.. +++.++||+||+++.+.+... ++... ... |.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdi---VG~~G~VyAVD~s~r~~~dLl--------------------~~ak~--r~N---I~ 184 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDL---VGPEGVVYAVEFSHRSGRDLT--------------------NMAKK--RPN---IV 184 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHH---hCCCCEEEEEECcHHHHHHHH--------------------HHhhh--cCC---CE
Confidence 458999999999999999995 677899999999865432111 11000 011 45
Q ss_pred eeecchhhh--hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTK--LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~--L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++.+|+... +....+.||+||+|.... +.....+.++.++|+|||.+++ .+.+
T Consensus 185 ~I~~Da~~p~~y~~~~~~vDvV~~Dva~p-dq~~il~~na~r~LKpGG~~vI-~ika 239 (293)
T PTZ00146 185 PIIEDARYPQKYRMLVPMVDVIFADVAQP-DQARIVALNAQYFLKNGGHFII-SIKA 239 (293)
T ss_pred EEECCccChhhhhcccCCCCEEEEeCCCc-chHHHHHHHHHHhccCCCEEEE-EEec
Confidence 555665431 222235799999998642 2333345678899999999888 4444
No 103
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.72 E-value=1.2e-07 Score=92.48 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..|. ....++|||+|||+|..++.+++. .+..+|+++|+++.+.+.+++ |+...
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~----~p~~~v~~vDis~~Al~~A~~-------------------nl~~n 243 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARH----SPKIRLTLSDVSAAALESSRA-------------------TLAAN 243 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHH-------------------HHHHc
Confidence 444443 233578999999999999999984 457799999999998887766 33322
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CC-----CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HD-----FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRR 299 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~-----~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~ 299 (327)
+.. .++..++..+ ...++||+|+.+-. |. +......++.+.++|+|||.+++---.. ..++ .
T Consensus 244 ~l~-----~~~~~~D~~~---~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~-l~y~---~ 311 (342)
T PRK09489 244 GLE-----GEVFASNVFS---DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF-LPYP---D 311 (342)
T ss_pred CCC-----CEEEEccccc---ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC-CChH---H
Confidence 322 2333344333 23578999998742 22 2334567889999999999765432221 2233 4
Q ss_pred HHHHHHHHcCCeEEEccceEEEeccc
Q 041517 300 AVNLFAKINGLKVQIDGQHWVIHSAV 325 (327)
Q Consensus 300 Av~~f~~~~gl~v~~~gq~w~i~~~~ 325 (327)
.+++... ..++......|.|.++.
T Consensus 312 ~l~~~Fg--~~~~la~~~~f~v~~a~ 335 (342)
T PRK09489 312 LLDETFG--SHEVLAQTGRFKVYRAI 335 (342)
T ss_pred HHHHHcC--CeEEEEeCCCEEEEEEE
Confidence 4444433 35666677788877665
No 104
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.3e-07 Score=90.41 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=92.3
Q ss_pred HHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
-|+.|-+.. ++++|||+|||+|-.++.++. +| -.+++++|+++...+.++++. ..
T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~k----LG-A~~v~g~DiDp~AV~aa~eNa-------------------~~ 207 (300)
T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAK----LG-AKKVVGVDIDPQAVEAARENA-------------------RL 207 (300)
T ss_pred HHHHHHHhhcCCCEEEEecCChhHHHHHHHH----cC-CceEEEecCCHHHHHHHHHHH-------------------HH
Confidence 334443332 578999999999999999888 44 567999999999888887743 33
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
.+.... +........+. +. +++||+|+-.-- -+....-...+.++|+|||++|+.-+..+ -.+.|.+.
T Consensus 208 N~v~~~---~~~~~~~~~~~-~~-~~~~DvIVANIL--A~vl~~La~~~~~~lkpgg~lIlSGIl~~-----q~~~V~~a 275 (300)
T COG2264 208 NGVELL---VQAKGFLLLEV-PE-NGPFDVIVANIL--AEVLVELAPDIKRLLKPGGRLILSGILED-----QAESVAEA 275 (300)
T ss_pred cCCchh---hhcccccchhh-cc-cCcccEEEehhh--HHHHHHHHHHHHHHcCCCceEEEEeehHh-----HHHHHHHH
Confidence 232110 11111222221 11 369999997642 23444567788999999999999988762 35667777
Q ss_pred HHHcCCeEEE--ccceEE
Q 041517 305 AKINGLKVQI--DGQHWV 320 (327)
Q Consensus 305 ~~~~gl~v~~--~gq~w~ 320 (327)
....|+.+.. ....|+
T Consensus 276 ~~~~gf~v~~~~~~~eW~ 293 (300)
T COG2264 276 YEQAGFEVVEVLEREEWV 293 (300)
T ss_pred HHhCCCeEeEEEecCCEE
Confidence 7777887654 345565
No 105
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.72 E-value=6.4e-08 Score=87.14 Aligned_cols=116 Identities=13% Similarity=0.073 Sum_probs=72.1
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
...++..+++++|++|||.|..++++|+. +-.|+++|.++...+..++.. ...++
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a-------------------~~~~l 77 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLA-------------------EEEGL 77 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHH-------------------HHTT-
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHH-------------------hhcCc
Confidence 33456778999999999999999999995 789999999987666443321 11122
Q ss_pred CCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC--Cc-HHHHHHHHHccCCCCeEEEEEcCCCCCCch
Q 041517 228 IDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF--NS-AWADINRAWRILRPGGVIFGHDYFTAADNR 295 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~~-v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~ 295 (327)
+|+....|-.+ ..+++.||+|+...-..+ .+ ...-++.+...++|||+.++......+++|
T Consensus 78 -----~i~~~~~Dl~~--~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p 141 (192)
T PF03848_consen 78 -----DIRTRVADLND--FDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP 141 (192)
T ss_dssp -----TEEEEE-BGCC--BS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS-
T ss_pred -----eeEEEEecchh--ccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC
Confidence 25555555333 123568999986533222 22 234578888899999998875544433333
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.71 E-value=1.8e-07 Score=87.24 Aligned_cols=134 Identities=20% Similarity=0.148 Sum_probs=85.6
Q ss_pred HHHHHHHHHh---hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 143 YGAVFGNLID---KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 143 ~g~lL~~L~~---~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
+..++..+.. ..++.+|||+|||+|..++.++.. .+..+++++|+++.+.+.++++
T Consensus 93 te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~----~~~~~v~~iDis~~~l~~a~~n----------------- 151 (275)
T PRK09328 93 TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKE----RPDAEVTAVDISPEALAVARRN----------------- 151 (275)
T ss_pred cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH-----------------
Confidence 3344444432 235679999999999999999985 3478999999999988877663
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC--------------CC-------------cHHHHHHH
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD--------------FN-------------SAWADINR 272 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~--------------~~-------------~v~~dl~~ 272 (327)
+. .+...+ +.+..++..+.++ .++||+|+.+-..- ++ .....++.
T Consensus 152 --~~-~~~~~~---i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~ 223 (275)
T PRK09328 152 --AK-HGLGAR---VEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ 223 (275)
T ss_pred --HH-hCCCCc---EEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH
Confidence 22 111122 7777776644332 36899998752100 00 12344667
Q ss_pred HHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 273 AWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 273 ~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+.++|+|||++++. +.+ .-.+.+..++...|+.
T Consensus 224 ~~~~Lk~gG~l~~e-~g~-----~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 224 APRYLKPGGWLLLE-IGY-----DQGEAVRALLAAAGFA 256 (275)
T ss_pred HHHhcccCCEEEEE-ECc-----hHHHHHHHHHHhCCCc
Confidence 77999999999883 222 1224456666667754
No 107
>PRK06922 hypothetical protein; Provisional
Probab=98.71 E-value=1e-07 Score=99.16 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=81.2
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
..+....++.+|||||||+|..+..+++. .++.+++++|.++.|.+.+++. ....+
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~----~P~~kVtGIDIS~~MLe~Arar-------------------l~~~g- 466 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEE----TEDKRIYGIDISENVIDTLKKK-------------------KQNEG- 466 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH-------------------hhhcC-
Confidence 44455557899999999999999888874 3589999999999999877652 11111
Q ss_pred CCcccceEeeecchhhhhhh--cCCcEeEEEEcC-CCC-------------CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 228 IDSVLPVPFSSGSALTKLCE--WGVVGDLIEIDA-GHD-------------FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~--l~~~fDLIfIDa-~h~-------------~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+.+..+++.+ ++. .+++||+|+... -|. .......++.+.+.|+|||.+++.|...
T Consensus 467 ----~~ie~I~gDa~d-Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 467 ----RSWNVIKGDAIN-LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred ----CCeEEEEcchHh-CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 126667777665 332 247899998642 111 1234578899999999999999877643
No 108
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.69 E-value=2.1e-07 Score=95.24 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=83.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||+|||+|..++.++.. . ++.+++++|+++.+.+.|++ |+...++.++ +.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~---~-p~~~v~avDis~~al~~A~~-------------------N~~~~~l~~~---v~ 192 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCE---L-PNANVIATDISLDAIEVAKS-------------------NAIKYEVTDR---IQ 192 (506)
T ss_pred CCEEEEccCchhHHHHHHHHH---C-CCCeEEEEECCHHHHHHHHH-------------------HHHHcCCccc---ee
Confidence 468999999999999999874 2 47899999999999988876 3333344444 77
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCC--------------CCCCc-------------HHHHHHHHHccCCCCeEEEEEcC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAG--------------HDFNS-------------AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~--------------h~~~~-------------v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+..++..+.++ +++||+|+.+-- ..+++ ...-++.+.++|+|||.+++. +
T Consensus 193 ~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-i 269 (506)
T PRK01544 193 IIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-I 269 (506)
T ss_pred eeecchhhhCc--CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-E
Confidence 77887665432 357999997521 00111 122356677899999999884 3
Q ss_pred CCCCCchhHHHHHHHHHHHcCCe
Q 041517 289 FTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 289 ~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
.. .-.+++..++...|+.
T Consensus 270 g~-----~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 270 GF-----KQEEAVTQIFLDHGYN 287 (506)
T ss_pred CC-----chHHHHHHHHHhcCCC
Confidence 32 2345666666666654
No 109
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.67 E-value=8.7e-09 Score=96.00 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=76.0
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
++|||+|||+|..+..||+. +..|++||..+.+.+.|++...+++. ..+. ....+++
T Consensus 91 ~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~---------------~~~~--~~y~l~~ 147 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPV---------------LEGA--IAYRLEY 147 (282)
T ss_pred ceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCch---------------hccc--cceeeeh
Confidence 57999999999999999996 79999999999999999876433320 0010 0011444
Q ss_pred eecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 237 SSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...+..+ ..++||.|.. +.-+-.......++.+.++|+|||.+++.++++
T Consensus 148 ~~~~~E~----~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 148 EDTDVEG----LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred hhcchhh----cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 3333332 2356999875 333334445577899999999999999999987
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.67 E-value=5.4e-07 Score=84.24 Aligned_cols=122 Identities=14% Similarity=0.005 Sum_probs=80.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||+|||+|..++.+++. .++.+++++|.++.+.+.+++ |+...+ ++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~----~~~~~v~~vDis~~al~~A~~-------------------N~~~~~-------~~ 136 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAA----LDGIELHAADIDPAAVRCARR-------------------NLADAG-------GT 136 (251)
T ss_pred CCEEEEecCchHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHH-------------------HHHHcC-------CE
Confidence 358999999999999999974 235799999999999988876 332222 24
Q ss_pred eeecchhhhhhh-cCCcEeEEEEcCCCC--------------CCc-------------HHHHHHHHHccCCCCeEEEEEc
Q 041517 236 FSSGSALTKLCE-WGVVGDLIEIDAGHD--------------FNS-------------AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 236 ~~~gda~~~L~~-l~~~fDLIfIDa~h~--------------~~~-------------v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+..+|..+.++. +.++||+|+.|---- +++ ...-++.+.++|+|||++++.-
T Consensus 137 ~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 137 VHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred EEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 556665554432 235799999884210 010 1234556679999999888752
Q ss_pred CCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 288 YFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 288 ~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
-.. . ...+..+++.+|+...
T Consensus 217 ~~~----~--~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 217 SER----Q--APLAVEAFARAGLIAR 236 (251)
T ss_pred Ccc----h--HHHHHHHHHHCCCCce
Confidence 221 1 2356666677777644
No 111
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.67 E-value=4.2e-07 Score=89.94 Aligned_cols=113 Identities=18% Similarity=0.096 Sum_probs=79.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..+- ......+||||||+|..++.+|+. .|+..++|||+.+.+.+.+.+ ++..
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~----~P~~~~iGIEI~~~~i~~a~~-------------------ka~~ 168 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKN----NPNKLFIGIEIHTPSIEQVLK-------------------QIEL 168 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHh----CCCCCEEEEECCHHHHHHHHH-------------------HHHH
Confidence 4444442 223468999999999999999984 468999999999988876654 2333
Q ss_pred hccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCc-------HHHHHHHHHccCCCCeEEEE
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNS-------AWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~-------v~~dl~~~~~lL~pGGvIi~ 285 (327)
.++. . |.+..+|+.+.+..+ ++.+|.|++--.-+++. ....++.+.++|+|||.+.+
T Consensus 169 ~gL~-N---V~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 169 LNLK-N---LLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred cCCC-c---EEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 3332 2 788889987654333 47899999853211110 13578999999999997765
No 112
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.67 E-value=1.9e-07 Score=94.39 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=74.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||||+|..+..+++. ..+|++||.++.+.+.+++. .+.... +
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~------~~~v~giD~s~~~l~~a~~~----------------------~~~~~~---i 85 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK------AGQVIALDFIESVIKKNESI----------------------NGHYKN---V 85 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHH----------------------hccCCc---e
Confidence 4579999999999999999984 46899999999887654321 011112 6
Q ss_pred Eeeecchhh-hhhhcCCcEeEEEEcCCCCC-C--cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALT-KLCEWGVVGDLIEIDAGHDF-N--SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~-~L~~l~~~fDLIfIDa~h~~-~--~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ .++..+.+||+|++.....+ . .....++.+.+.|+|||+|++.|...
T Consensus 86 ~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 86 KFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred EEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 666666543 22323478999998764322 2 24567899999999999999987654
No 113
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.67 E-value=2.3e-07 Score=84.42 Aligned_cols=99 Identities=13% Similarity=0.187 Sum_probs=68.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.++|++||+++ +... . + +
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~---~~~~~~V~aVDi~~-~~~~----~-----------------~------------v 93 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQ---IGDKGRVIACDILP-MDPI----V-----------------G------------V 93 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHH---cCCCceEEEEeccc-ccCC----C-----------------C------------c
Confidence 3568999999999999999985 56678999999977 2110 0 1 3
Q ss_pred Eeeecchhhh--h----hhc-CCcEeEEEEcCCCCCCc------------HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTK--L----CEW-GVVGDLIEIDAGHDFNS------------AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~--L----~~l-~~~fDLIfIDa~h~~~~------------v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+|..+. + ..+ +.+||+|+.|....... ....++++.++|+|||.+++..+..
T Consensus 94 ~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 94 DFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred EEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 4444443331 1 112 46899999987432210 1346899999999999999977654
No 114
>PRK06202 hypothetical protein; Provisional
Probab=98.65 E-value=1.4e-07 Score=86.46 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=74.2
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
..++...++.+|||||||+|..+..|++.++..+++.+|+++|+++++.+.+++... ..+
T Consensus 53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-------------------~~~- 112 (232)
T PRK06202 53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-------------------RPG- 112 (232)
T ss_pred HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-------------------cCC-
Confidence 333333457899999999999999998865445667799999999999988765321 001
Q ss_pred CCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 228 IDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+++..+++.+ ++..+++||+|+.-.. |-.++ ....++++.+.++ |.+++.|...
T Consensus 113 ------~~~~~~~~~~-l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 113 ------VTFRQAVSDE-LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ------CeEEEEeccc-ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 2222222211 2223578999998643 32333 3457888888887 5666667654
No 115
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.64 E-value=2e-07 Score=89.98 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=72.0
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+.++|||||||+|+.++.++.. + ...|++||+++.|...++.. ++.. +...+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~----g-~~~v~GiDpS~~ml~q~~~~-----------------~~~~--~~~~~--- 172 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGH----G-AKSLVGIDPTVLFLCQFEAV-----------------RKLL--DNDKR--- 172 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc----C-CCEEEEEcCCHHHHHHHHHH-----------------HHHh--ccCCC---
Confidence 45689999999999999888763 3 24799999999876543221 0110 11111
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+...+..+ ++. ...||+||.-+. +-.......++++.+.|+|||.+++.+..
T Consensus 173 v~~~~~~ie~-lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 173 AILEPLGIEQ-LHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred eEEEECCHHH-CCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4454454433 333 247999997653 22355678899999999999999987653
No 116
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.63 E-value=4.5e-07 Score=90.39 Aligned_cols=135 Identities=19% Similarity=0.079 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 142 SYGAVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 142 ~~g~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
++..++..+.... +..+|||+|||+|..++.++.. .++.+++++|.++.+.+.++++
T Consensus 237 eTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~----~p~a~VtAVDiS~~ALe~AreN------------------ 294 (423)
T PRK14966 237 ETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALE----RPDAFVRASDISPPALETARKN------------------ 294 (423)
T ss_pred cHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH------------------
Confidence 4455666665444 3468999999999999999874 3478999999999999988773
Q ss_pred HHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-------------CCc-------------HHHHHHHHH
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-------------FNS-------------AWADINRAW 274 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-------------~~~-------------v~~dl~~~~ 274 (327)
+...+. + +.+..+|..+.......+||+|+.+--.- +++ ...-++.+.
T Consensus 295 -a~~~g~--r---V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 295 -AADLGA--R---VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred -HHHcCC--c---EEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 332221 2 77788876542111135799999863210 000 123345666
Q ss_pred ccCCCCeEEEE-EcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 275 RILRPGGVIFG-HDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 275 ~lL~pGGvIi~-dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
++|+|||.+++ .++. -.+.+.+++...|+.
T Consensus 369 ~~LkpgG~lilEiG~~-------Q~e~V~~ll~~~Gf~ 399 (423)
T PRK14966 369 DRLAEGGFLLLEHGFD-------QGAAVRGVLAENGFS 399 (423)
T ss_pred HhcCCCcEEEEEECcc-------HHHHHHHHHHHCCCc
Confidence 79999998776 2222 245666677767754
No 117
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.63 E-value=2.3e-07 Score=84.17 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=66.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++. +.+++++|.++.+.+.+++.. ...+..++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~-------------------~~~~~~~~--- 113 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERA-------------------PEAGLAGN--- 113 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHH-------------------HhcCCccC---
Confidence 35679999999999999999874 467999999999998887632 12222222
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEE
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+.+..++. ....+.||+|+.-.. |.+ +.....++.+.+++++|+++.+
T Consensus 114 i~~~~~d~----~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 114 ITFEVGDL----ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred cEEEEcCc----hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 66766662 223578999987533 222 2334456667676655555544
No 118
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.63 E-value=2.4e-07 Score=83.76 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=75.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||+|||+|..+..+++. ..+++++|.++.+.+.+++. +...+.. .+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~-------------------~~~~~~~----~~ 95 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLH-------------------AKKDPLL----KI 95 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHH-------------------HHHcCCC----ce
Confidence 4789999999999999988873 45699999998887766542 2211110 26
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..++..+.......+||+|+.... +........++.+.+.|+|||++++.+..
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 67677766654333478999998642 22344567889999999999999887654
No 119
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.61 E-value=2.1e-07 Score=85.67 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=107.3
Q ss_pred hhhhhhhhhccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCc-EEEEEeCCCCChhhhhhh-ccc
Q 041517 128 ISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDS-QILCIDDFRGWPGFRDKF-KEI 205 (327)
Q Consensus 128 v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~-~V~~ID~~~~~~~~A~~~-~~~ 205 (327)
..++++.+....|..+..= -.+++-.+..+|||.++|.||+|+..++. +. .|++||.++...++|.-+ |+-
T Consensus 108 GIrMhrt~~tdP~~Dt~~K-v~~V~~~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr 180 (287)
T COG2521 108 GIRMHRTKGTDPLEDTLAK-VELVKVKRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSR 180 (287)
T ss_pred cEEEecccCcCcHHHHHhh-hheeccccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCc
Confidence 4445555555556332111 11222234689999999999999998774 56 999999999988877653 221
Q ss_pred CccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEc------CCCCCCcHHHHHHHHHccCC
Q 041517 206 PMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEID------AGHDFNSAWADINRAWRILR 278 (327)
Q Consensus 206 ~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfID------a~h~~~~v~~dl~~~~~lL~ 278 (327)
++.. . .|+++.||+.+..+.+ +.+||+|+-| +.+-|. .+.+++++++|+
T Consensus 181 ---------------~l~~-----~--~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYs--eefY~El~RiLk 236 (287)
T COG2521 181 ---------------ELFE-----I--AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYS--EEFYRELYRILK 236 (287)
T ss_pred ---------------cccc-----c--ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhH--HHHHHHHHHHcC
Confidence 2111 1 2889999999998887 4789999988 333343 377899999999
Q ss_pred CCeEEEEEcCCCCCCchh--HHHHHHHHHHHcCCeEEEccc
Q 041517 279 PGGVIFGHDYFTAADNRG--VRRAVNLFAKINGLKVQIDGQ 317 (327)
Q Consensus 279 pGGvIi~dD~~~~~~~~G--V~~Av~~f~~~~gl~v~~~gq 317 (327)
|||.++==-......++| +.+.|.+-.+.-|+.+.-.-+
T Consensus 237 rgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 237 RGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred cCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 999986422222224555 778888888888877543333
No 120
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.61 E-value=1.9e-07 Score=92.52 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=72.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.+++. . +.+|+++|+++++.+.+++. +. +. .+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~---~--g~~V~giDlS~~~l~~A~~~-------------------~~--~l-----~v 215 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEH---Y--GVSVVGVTISAEQQKLAQER-------------------CA--GL-----PV 215 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHHH-------------------hc--cC-----eE
Confidence 3569999999999999999874 2 57999999999988877652 21 11 15
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..++..+ ++++||.|+.-..... ......++.+.++|+|||+++++++..
T Consensus 216 ~~~~~D~~~----l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 216 EIRLQDYRD----LNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred EEEECchhh----cCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 555555433 2468999975432111 223467899999999999999987653
No 121
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.61 E-value=5.9e-07 Score=79.79 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=65.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++. ..+.++|+++|+++.+ .. . +
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~---~~~~~~v~~vDis~~~-----~~-~----------------~------------ 73 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQ---VGGKGRVIAVDLQPMK-----PI-E----------------N------------ 73 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHH---hCCCceEEEEeccccc-----cC-C----------------C------------
Confidence 35689999999999999998874 4457799999999854 10 0 1
Q ss_pred eEeeecchhh-----hhh-hc-CCcEeEEEEcCCCC------CCc------HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALT-----KLC-EW-GVVGDLIEIDAGHD------FNS------AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~-----~L~-~l-~~~fDLIfIDa~h~------~~~------v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+..++..+ .+. .. +..||+|++|+... .+. ....++.+.+.|+|||++++..+.
T Consensus 74 i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 74 VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 2222222211 111 11 35799999986421 111 246788999999999999986433
No 122
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.61 E-value=2.8e-07 Score=88.27 Aligned_cols=105 Identities=14% Similarity=-0.060 Sum_probs=70.1
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||+|||+|..+..+++.+ ..+.++++||++++|++.+++. +...... +.|.
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l---~~~~~~~~iDiS~~mL~~a~~~-------------------l~~~~p~---~~v~ 118 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDAL---RQPARYVPIDISADALKESAAA-------------------LAADYPQ---LEVH 118 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhh---ccCCeEEEEECCHHHHHHHHHH-------------------HHhhCCC---ceEE
Confidence 4799999999999999999863 3368899999999998877652 2111100 1256
Q ss_pred eeecchhhhhhhcC----CcEeEEEEcCCC---CCCcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEWG----VVGDLIEIDAGH---DFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l~----~~fDLIfIDa~h---~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
...+|..+.+.... ....+++.+... ..+.....|+.+.+.|+|||++++
T Consensus 119 ~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 119 GICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 66677654332211 134466666442 223355678999999999997764
No 123
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.61 E-value=1.5e-07 Score=88.60 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=68.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|+.+..+++.+... ....++++|+++.+.+.|++... + +
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~-~~~~v~giD~s~~~l~~A~~~~~----------------~------------~ 135 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI-TTMQLFGLDISKVAIKYAAKRYP----------------Q------------V 135 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc-cCCeEEEECCCHHHHHHHHHhCC----------------C------------C
Confidence 35789999999999999999853211 12489999999998877654210 1 4
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.+..+++.+ ++..+++||+|+.--.. ..++++.+.|+|||++++-..
T Consensus 136 ~~~~~d~~~-lp~~~~sfD~I~~~~~~------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 136 TFCVASSHR-LPFADQSLDAIIRIYAP------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred eEEEeeccc-CCCcCCceeEEEEecCC------CCHHHHHhhccCCCEEEEEeC
Confidence 555565544 34335789999853221 245789999999999987643
No 124
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.60 E-value=2.6e-07 Score=84.38 Aligned_cols=117 Identities=7% Similarity=-0.175 Sum_probs=71.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..++||++|||.|..+++||+. +..|++||+++...+.+.+......... ... .+...+-..|
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~----------~~~-~~~~~~~~~v 96 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVT----------QQG-EFTRYRAGNI 96 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCccee----------ccc-cceeeecCce
Confidence 4579999999999999999984 7899999999988775422111000000 000 0000001127
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCc--HHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNS--AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~--v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
++..+|..+.-+...++||+|+--+. +..++ -..+++.+.++|+|||++++.-+
T Consensus 97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 97 EIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred EEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 88888776532222357888864332 22222 23478999999999997655544
No 125
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.59 E-value=4.5e-07 Score=87.27 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=73.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++.+|||+|||+|..++.+|+. +.+|+++|.++.+.+.+++ |+...+. ++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~-------------------n~~~~~l-~~--- 222 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQ-------------------SAAELGL-TN--- 222 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHH-------------------HHHHcCC-Cc---
Confidence 35789999999999999999983 5799999999999988776 4433343 22
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+++..+|+.+.+......||+|++|-... .....+..++..++|+++|.+
T Consensus 223 v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~--G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 223 VQFQALDSTQFATAQGEVPDLVLVNPPRR--GIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred eEEEEcCHHHHHHhcCCCCeEEEECCCCC--CccHHHHHHHHHcCCCeEEEE
Confidence 88899998876544446799999995432 222445455555788775554
No 126
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=2e-07 Score=84.38 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=74.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
-..|||||||+|..--..-. .+..+|+++|+++.|.+++.+... +|. -..+.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-----~p~~svt~lDpn~~mee~~~ks~~---------------E~k--------~~~~~ 128 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-----KPINSVTCLDPNEKMEEIADKSAA---------------EKK--------PLQVE 128 (252)
T ss_pred ccceEEecccCCCCcccccC-----CCCceEEEeCCcHHHHHHHHHHHh---------------hcc--------CcceE
Confidence 45689999999988554332 368999999999999998865321 121 11133
Q ss_pred -eeecchhhhhhhc-CCcEeEEEEc---CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 -FSSGSALTKLCEW-GVVGDLIEID---AGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 -~~~gda~~~L~~l-~~~fDLIfID---a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
|..+++.+ |+.+ ++++|.|+-- +.+ +.+.+.|+++.++|||||+|++-.-..
T Consensus 129 ~fvva~ge~-l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 129 RFVVADGEN-LPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEEeechhc-CcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 66676655 4554 5899998743 444 556799999999999999999977665
No 127
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.58 E-value=4.2e-07 Score=69.33 Aligned_cols=101 Identities=23% Similarity=0.160 Sum_probs=71.2
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|+|+|||.|..+..+++ ....+++++|.++...+.+++.. . .+.. ..+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~-------------------~-~~~~---~~~~~~ 52 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----GPGARVTGVDISPVALELARKAA-------------------A-ALLA---DNVEVL 52 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHHH-------------------h-cccc---cceEEE
Confidence 489999999999888876 23789999999887766554210 0 0111 126667
Q ss_pred ecchhhhhhhcCCcEeEEEEcCCCCC--CcHHHHHHHHHccCCCCeEEEEE
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAGHDF--NSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~h~~--~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.++..+........+|+|+.+..... ......++.+.+.|+|||++++.
T Consensus 53 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 53 KGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 77766643323468999999986543 33456788999999999999875
No 128
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.58 E-value=9.5e-07 Score=79.23 Aligned_cols=117 Identities=15% Similarity=0.034 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..|.......+|||++||+|..++.++.. + ..+|++||.++...+.+++ |+...
T Consensus 40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~sr----g-a~~v~~vE~~~~a~~~~~~-------------------N~~~~ 95 (189)
T TIGR00095 40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSR----G-AKVAFLEEDDRKANQTLKE-------------------NLALL 95 (189)
T ss_pred HHHHHHHhcCCCEEEEecCCCcHHHHHHHhC----C-CCEEEEEeCCHHHHHHHHH-------------------HHHHh
Confidence 3343433446789999999999999998873 3 2489999999988877765 44444
Q ss_pred ccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHH--HccCCCCeEEEEEcCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRA--WRILRPGGVIFGHDYF 289 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~--~~lL~pGGvIi~dD~~ 289 (327)
+..++ +.+..+|+.+.+..+ ...||+||+|--.........++.+ ..+|++||+|++....
T Consensus 96 ~~~~~---~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 96 KSGEQ---AEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCccc---EEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 44434 788889987766543 2358999999765443333344433 3479999999986443
No 129
>PRK05785 hypothetical protein; Provisional
Probab=98.55 E-value=8.2e-07 Score=81.69 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=71.5
Q ss_pred HHHHHHHhh-cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLIDK-VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~~-~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.++..+... ..+.+|||||||+|..+..+++. . +++|+++|++++|.+.+++..
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~----~-~~~v~gvD~S~~Ml~~a~~~~-------------------- 94 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKV----F-KYYVVALDYAENMLKMNLVAD-------------------- 94 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHh----c-CCEEEEECCCHHHHHHHHhcc--------------------
Confidence 344554433 24689999999999999999884 2 579999999999998775410
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCe
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGG 281 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGG 281 (327)
.+..+++.+ ++..+++||+|++-.. |..++....++++.+.|+|+.
T Consensus 95 -----------~~~~~d~~~-lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 95 -----------DKVVGSFEA-LPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -----------ceEEechhh-CCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 112344433 4544689999997643 434666789999999999954
No 130
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.55 E-value=4.2e-07 Score=82.52 Aligned_cols=112 Identities=9% Similarity=0.051 Sum_probs=75.7
Q ss_pred HHHHHHHh-hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLID-KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~-~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.++..+.+ ..+..+|||||||+|..+..++.. +.+|+++|+++.+.+.+++. +.
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~-------------------~~ 98 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNR-------------------AQ 98 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHH-------------------HH
Confidence 34444432 345789999999999999999873 56999999999999887663 22
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEE-cCCCCCC--cHHHHHHHHHccCCCCeEEEEEcC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEI-DAGHDFN--SAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~--~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
..+..++ +.+..++..+. ..+||+|+. +.-+.++ .....+..+.+++++|+++.+...
T Consensus 99 ~~~~~~~---i~~~~~d~~~~----~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 99 GRDVAGN---VEFEVNDLLSL----CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred hcCCCCc---eEEEECChhhC----CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 1122122 77777775542 268999975 4433222 234567888888888888777543
No 131
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.54 E-value=3.6e-07 Score=88.44 Aligned_cols=107 Identities=13% Similarity=0.005 Sum_probs=75.2
Q ss_pred HHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC
Q 041517 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID 229 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~ 229 (327)
++...+..+|||+|||+|..++.++.. +.+++++|+++.|...+++ |+...+..+
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~-------------------nl~~~g~~~ 231 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARI-------------------NLEHYGIED 231 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHH-------------------HHHHhCCCC
Confidence 333334568999999999988776653 6899999999998877665 444445432
Q ss_pred cccceEeeecchhhhhhhcCCcEeEEEEcCC---------CCC-CcHHHHHHHHHccCCCCeEEEEE
Q 041517 230 SVLPVPFSSGSALTKLCEWGVVGDLIEIDAG---------HDF-NSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 230 ~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~---------h~~-~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+..+|+.+ ++..+..||+|+.|.. +.. .-....++.+.+.|+|||.+++-
T Consensus 232 ----i~~~~~D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 232 ----FFVKRGDATK-LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred ----CeEEecchhc-CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 5666777665 3433578999999832 101 11346788999999999988764
No 132
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.54 E-value=3.5e-07 Score=87.56 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 144 GAVFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 144 g~lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
...|+.|.+... .++|||||||+|-.++..++ +| -.+|+++|+++...+.+++ |+
T Consensus 149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~k----lG-A~~v~a~DiDp~Av~~a~~-------------------N~ 204 (295)
T PF06325_consen 149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAK----LG-AKKVVAIDIDPLAVEAARE-------------------NA 204 (295)
T ss_dssp HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHH----TT-BSEEEEEESSCHHHHHHHH-------------------HH
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHH----cC-CCeEEEecCCHHHHHHHHH-------------------HH
Confidence 345555555544 57999999999999999887 45 4589999999998887776 55
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHH
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN 302 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~ 302 (327)
...+..++ +... ...+. ..++||+|+..-. .+........+.++|+|||++|+.-+... ....|.+
T Consensus 205 ~~N~~~~~---~~v~--~~~~~---~~~~~dlvvANI~--~~vL~~l~~~~~~~l~~~G~lIlSGIl~~-~~~~v~~--- 270 (295)
T PF06325_consen 205 ELNGVEDR---IEVS--LSEDL---VEGKFDLVVANIL--ADVLLELAPDIASLLKPGGYLILSGILEE-QEDEVIE--- 270 (295)
T ss_dssp HHTT-TTC---EEES--CTSCT---CCS-EEEEEEES---HHHHHHHHHHCHHHEEEEEEEEEEEEEGG-GHHHHHH---
T ss_pred HHcCCCee---EEEE--Eeccc---ccccCCEEEECCC--HHHHHHHHHHHHHhhCCCCEEEEccccHH-HHHHHHH---
Confidence 55555554 3332 11111 1378999996543 24445566777889999999999888862 2233333
Q ss_pred HHHHHcCCeEE--EccceEE
Q 041517 303 LFAKINGLKVQ--IDGQHWV 320 (327)
Q Consensus 303 ~f~~~~gl~v~--~~gq~w~ 320 (327)
.+ +. |+++. .....|+
T Consensus 271 a~-~~-g~~~~~~~~~~~W~ 288 (295)
T PF06325_consen 271 AY-KQ-GFELVEEREEGEWV 288 (295)
T ss_dssp HH-HT-TEEEEEEEEETTEE
T ss_pred HH-HC-CCEEEEEEEECCEE
Confidence 33 33 77654 3445565
No 133
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.53 E-value=6.2e-07 Score=83.52 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=95.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccC--CCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQL--GLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l--~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
..++||+++|+|..|.-+.+.+... ..+++|+.+|++++|+.++++... ..++.++ -.
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~-------------------~~~l~~~-~~ 160 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK-------------------KRPLKAS-SR 160 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh-------------------hcCCCcC-Cc
Confidence 4689999999999999999975431 124899999999999998876321 0111111 01
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHH-HHHHHHHHHcCCe
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVR-RAVNLFAKINGLK 311 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~-~Av~~f~~~~gl~ 311 (327)
+....+||++ |+.-+..||..-|-.+.++ .+....+++++|.|||||++.+=+... |. +.+..|.+..-++
T Consensus 161 ~~w~~~dAE~-LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk------v~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 161 VEWVEGDAED-LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK------VENEPLKWFYDQYSFD 233 (296)
T ss_pred eEEEeCCccc-CCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc------cccHHHHHHHHhhhhh
Confidence 7777888876 5766789999998877655 567789999999999999888654443 44 5666666655555
Q ss_pred EEE
Q 041517 312 VQI 314 (327)
Q Consensus 312 v~~ 314 (327)
|.+
T Consensus 234 Vlp 236 (296)
T KOG1540|consen 234 VLP 236 (296)
T ss_pred hhc
Confidence 544
No 134
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.47 E-value=9.2e-07 Score=84.17 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=87.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.|++||-||-|-|..+..+.+ ..+-.+++.||+++...+.++++.. +......+.| +
T Consensus 76 ~pk~VLiiGgGdG~tlRevlk----h~~ve~i~~VEID~~Vi~~ar~~l~----------------~~~~~~~dpR---v 132 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLK----HLPVERITMVEIDPAVIELARKYLP----------------EPSGGADDPR---V 132 (282)
T ss_pred CCCeEEEECCCccHHHHHHHh----cCCcceEEEEEcCHHHHHHHHHhcc----------------CcccccCCCc---e
Confidence 468999999999999999887 4568999999999999999988753 1111111345 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~d 286 (327)
++..+|+.+.+.....+||+|++|..-..-+ ....++.+.+.|+++|+++..
T Consensus 133 ~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 133 EIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 8889999999887767999999998654211 468899999999999999987
No 135
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.44 E-value=2.5e-06 Score=79.66 Aligned_cols=135 Identities=14% Similarity=0.017 Sum_probs=92.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+|++||-||-|.|..+..+.+ .++..+++.||+++...+.+++++. .....-.+.+ +
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~----~~~~~~i~~VEiD~~Vv~~a~~~f~----------------~~~~~~~d~r---~ 132 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLK----HPPVESITVVEIDPEVVELARKYFP----------------EFSEGLDDPR---V 132 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTT----STT-SEEEEEES-HHHHHHHHHHTH----------------HHHTTGGSTT---E
T ss_pred CcCceEEEcCCChhhhhhhhh----cCCcceEEEEecChHHHHHHHHhch----------------hhccccCCCc---e
Confidence 589999999999999888776 4556899999999999999888642 1111011233 8
Q ss_pred EeeecchhhhhhhcCC-cEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 235 PFSSGSALTKLCEWGV-VGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~-~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
++..+|+...+.+..+ +||+|++|...+..+ ..+.++.+.+.|+|||+++..-..... .+..-+.+...++..
T Consensus 133 ~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~-~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 133 RIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL-HPELFKSILKTLRSV 211 (246)
T ss_dssp EEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT-THHHHHHHHHHHHTT
T ss_pred EEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc-chHHHHHHHHHHHHh
Confidence 8899999999888766 999999998653211 257889999999999999987533211 233334444444544
Q ss_pred CCeEE
Q 041517 309 GLKVQ 313 (327)
Q Consensus 309 gl~v~ 313 (327)
.-.+.
T Consensus 212 F~~v~ 216 (246)
T PF01564_consen 212 FPQVK 216 (246)
T ss_dssp SSEEE
T ss_pred CCceE
Confidence 43443
No 136
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.39 E-value=1.6e-06 Score=79.52 Aligned_cols=115 Identities=10% Similarity=-0.055 Sum_probs=71.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCc---cccchHHHHHHHHHHhhhccCCcc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPM---VNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~---~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
+.++||++|||.|..+++||+. +.+|++||+++...+.+.+...+.. ..|+. +.. ...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~--------~~~---~~~-- 97 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEF--------EHY---QAG-- 97 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHHHcCCCccccccccc--------ccc---ccC--
Confidence 3479999999999999999984 7899999999987765422110000 00000 000 011
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeE--EEEEcCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGV--IFGHDYF 289 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGv--Ii~dD~~ 289 (327)
.|.+..+|..+.-+.....||+|+--+. +.. +.-..+++.+.++|+|||+ ++...+.
T Consensus 98 -~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~ 159 (218)
T PRK13255 98 -EITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP 159 (218)
T ss_pred -ceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence 2777788776643333357999884332 212 2234678999999999975 3345443
No 137
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.39 E-value=6.8e-06 Score=83.46 Aligned_cols=127 Identities=14% Similarity=0.112 Sum_probs=88.7
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||++++.|.=|..||+. ++..+.|+++|+++.-....+ +|+...|..+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~---l~~~g~lvA~D~~~~R~~~L~-------------------~nl~r~G~~n---- 165 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAAL---MNNQGAIVANEYSASRVKVLH-------------------ANISRCGVSN---- 165 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHH---cCCCCEEEEEeCCHHHHHHHH-------------------HHHHHcCCCe----
Confidence 35679999999999999999996 556789999999876554333 3666666532
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-------H----------------HHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-------A----------------WADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-------v----------------~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
|.....|+...-..+...||.|++|+--+... . .+-|+.++++|+|||+||...+-.
T Consensus 166 v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 166 VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 56666666553233456899999997644221 1 345788899999999999999876
Q ss_pred CCCchhHHHHHHHHHHHc
Q 041517 291 AADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~~~ 308 (327)
++ ..=.+-|+.|.+++
T Consensus 246 ~~--eENE~vV~~~L~~~ 261 (470)
T PRK11933 246 NR--EENQAVCLWLKETY 261 (470)
T ss_pred CH--HHHHHHHHHHHHHC
Confidence 42 22334455555554
No 138
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.38 E-value=9.4e-07 Score=83.19 Aligned_cols=130 Identities=20% Similarity=0.075 Sum_probs=74.6
Q ss_pred CCCEEEEEcCcchHH----HHHHHHHhccC-CCCcEEEEEeCCCCChhhhhhhcccC--ccccchHHHHHHHHHHh----
Q 041517 155 RPRVIIEVGSFLGAS----ALHMANLTRQL-GLDSQILCIDDFRGWPGFRDKFKEIP--MVNGNVLLYFQFLQNVI---- 223 (327)
Q Consensus 155 ~p~~VLEIGt~~G~S----al~lA~a~r~l-~~~~~V~~ID~~~~~~~~A~~~~~~~--~~~g~~~~~~~Fl~nv~---- 223 (327)
++.+|+++|||+|.- |+.+++..... ..+.+|+++|+++.+.+.|++..... ...-......++.....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 356999999999975 44444432110 12579999999999999988742100 00000000111100000
Q ss_pred -hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 224 -YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 224 -~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.....++ |.|..++..+. +...++||+|+.-.. +-. +.....++.+.+.|+|||++++-..
T Consensus 179 v~~~ir~~---V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKER---VRFAKHNLLAE-SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCc---CEEeeccCCCC-CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0001112 77777776552 112478999998532 222 2334689999999999999998544
No 139
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.37 E-value=3.8e-06 Score=80.12 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=76.4
Q ss_pred HHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-
Q 041517 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI- 228 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~- 228 (327)
+.+..+.++||++=|++|.++++.+.. | -.+|++||.+....+.+++ |+...|+.
T Consensus 118 v~~~~~gkrvLnlFsYTGgfsv~Aa~g----G-A~~v~~VD~S~~al~~a~~-------------------N~~lNg~~~ 173 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFSYTGGFSVAAAAG----G-AKEVVSVDSSKRALEWAKE-------------------NAALNGLDL 173 (286)
T ss_dssp HHHHCTTCEEEEET-TTTHHHHHHHHT----T-ESEEEEEES-HHHHHHHHH-------------------HHHHTT-CC
T ss_pred HHHHcCCCceEEecCCCCHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHH-------------------HHHHcCCCc
Confidence 344456889999999999999987763 1 3479999999998888877 44444443
Q ss_pred CcccceEeeecchhhhhhhc--CCcEeEEEEcCC---CCCCcHHH----HHHHHHccCCCCeEEEEEcCCC
Q 041517 229 DSVLPVPFSSGSALTKLCEW--GVVGDLIEIDAG---HDFNSAWA----DINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~---h~~~~v~~----dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++ +++..+|+.+.|..+ .++||+|++|-- +....+.. -+..+.++|+|||+|++.-+..
T Consensus 174 ~~---~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 174 DR---HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp TC---EEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred cc---eEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 23 889999988877543 579999999933 11112223 3567889999999988776654
No 140
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.35 E-value=7.7e-06 Score=79.09 Aligned_cols=130 Identities=15% Similarity=0.012 Sum_probs=78.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-Ccccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI-DSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~-~~v~~ 233 (327)
+..+|||||||+|..++.+++. +.+|+++|+++.|.+.+++... ..+.. .....
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~-------------------~~~~~~~~~~~ 198 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAK-------------------EALAALPPEVL 198 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH-------------------hcccccccccc
Confidence 4679999999999999999983 5799999999999998876321 11000 00112
Q ss_pred eEeeecchhhhhhhcCCcEeEEEE-cCCCCCCc--HHHHHHHHHccCCCCeEEEEEcCCC---------CCCchh-----
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEI-DAGHDFNS--AWADINRAWRILRPGGVIFGHDYFT---------AADNRG----- 296 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~---------~~~~~G----- 296 (327)
+.+..++..+ +++.||+|+. |.-+.++. ....++.+. .+.+||+||...-.. ...++|
T Consensus 199 ~~f~~~Dl~~----l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~ 273 (315)
T PLN02585 199 PKFEANDLES----LSGKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIISFAPKTLYYDILKRIGELFPGPSKAT 273 (315)
T ss_pred eEEEEcchhh----cCCCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCc
Confidence 5666665432 3578999984 44332322 122344444 467788777542211 001111
Q ss_pred -----HHHHHHHHHHHcCCeEEE
Q 041517 297 -----VRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 297 -----V~~Av~~f~~~~gl~v~~ 314 (327)
-.+-+.++++..|+++..
T Consensus 274 r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 274 RAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred eeeeCCHHHHHHHHHHCCCEEEE
Confidence 145567777888888764
No 141
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.34 E-value=3.9e-06 Score=84.06 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=71.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||+|..++.+|+. ..+|+++|.++.+.+.+++ |+...+.. + +.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~-------------------n~~~~~~~-n---v~ 343 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQ-------------------NAELNGIA-N---VE 343 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHH-------------------HHHHhCCC-c---eE
Confidence 478999999999999999984 4689999999999988876 33333321 2 88
Q ss_pred eeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..+++.+.++.+ +..||+|++|.....- ....++.+. .++|++++.+
T Consensus 344 ~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 344 FLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-AAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred EEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-CHHHHHHHH-hcCCCEEEEE
Confidence 8999988766543 3579999999764321 123445444 4889987665
No 142
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=5.4e-06 Score=78.83 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 142 SYGAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 142 ~~g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
++..++..+.... .+.+|||||||+|..++.+|.. .+..+|+++|+++...+.|++
T Consensus 95 dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~----~~~~~V~a~Dis~~Al~~A~~------------------ 152 (280)
T COG2890 95 DTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKE----GPDAEVIAVDISPDALALARE------------------ 152 (280)
T ss_pred chHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhh----CcCCeEEEEECCHHHHHHHHH------------------
Confidence 4555665533111 1227999999999999999985 346899999999999999987
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEc-----CC--CC------CC-------------cHHHHHHHH
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEID-----AG--HD------FN-------------SAWADINRA 273 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfID-----a~--h~------~~-------------~v~~dl~~~ 273 (327)
|....++ .+ +.+..++ .+....++||+|+.. .. +. ++ -+..-++.+
T Consensus 153 -Na~~~~l-~~---~~~~~~d---lf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a 224 (280)
T COG2890 153 -NAERNGL-VR---VLVVQSD---LFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEA 224 (280)
T ss_pred -HHHHcCC-cc---EEEEeee---cccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhh
Confidence 4444444 22 3333333 233344589999743 22 00 11 134446778
Q ss_pred HccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 274 WRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 274 ~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
...|+|||++++---.. -.+.|.++....+
T Consensus 225 ~~~l~~~g~l~le~g~~------q~~~v~~~~~~~~ 254 (280)
T COG2890 225 PDILKPGGVLILEIGLT------QGEAVKALFEDTG 254 (280)
T ss_pred HHHcCCCcEEEEEECCC------cHHHHHHHHHhcC
Confidence 88999999887744332 2566777777777
No 143
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=4.2e-06 Score=79.90 Aligned_cols=143 Identities=15% Similarity=0.116 Sum_probs=91.0
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
||+.|-... .++|||+|||.|..++.+|+. .|..+++.+|.+.-..+.+++ |+...
T Consensus 150 Ll~~l~~~~-~~~vlDlGCG~Gvlg~~la~~----~p~~~vtmvDvn~~Av~~ar~-------------------Nl~~N 205 (300)
T COG2813 150 LLETLPPDL-GGKVLDLGCGYGVLGLVLAKK----SPQAKLTLVDVNARAVESARK-------------------NLAAN 205 (300)
T ss_pred HHHhCCccC-CCcEEEeCCCccHHHHHHHHh----CCCCeEEEEecCHHHHHHHHH-------------------hHHHc
Confidence 455554333 349999999999999999984 568999999999988888877 34333
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC-----CcHHHHHHHHHccCCCCeEE-EEEcCCCCCCchhHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF-----NSAWADINRAWRILRPGGVI-FGHDYFTAADNRGVR 298 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~-----~~v~~dl~~~~~lL~pGGvI-i~dD~~~~~~~~GV~ 298 (327)
+..+. .+...+..+ ...++||+|+..-- |.. .-.++-++.+.+.|++||-| |+-+ . .+...
T Consensus 206 ~~~~~----~v~~s~~~~---~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan--~---~l~y~ 273 (300)
T COG2813 206 GVENT----EVWASNLYE---PVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN--R---HLPYE 273 (300)
T ss_pred CCCcc----EEEEecccc---cccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc--C---CCChH
Confidence 33221 122222222 22348999997632 221 22346789999999999933 3434 2 23455
Q ss_pred HHHHHHHHHcCCeEEEccceEEEecccC
Q 041517 299 RAVNLFAKINGLKVQIDGQHWVIHSAVN 326 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~~~gq~w~i~~~~~ 326 (327)
...++.+. ..++...+..+.|.+++.
T Consensus 274 ~~L~~~Fg--~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 274 KKLKELFG--NVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred HHHHHhcC--CEEEEEeCCCEEEEEEec
Confidence 55555554 456666667777766653
No 144
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.33 E-value=3.9e-06 Score=82.86 Aligned_cols=101 Identities=10% Similarity=0.055 Sum_probs=71.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||+|||+|..++.+|.. ..+|++||.++.+.+.+++ |+...+.. + +
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~-------------------N~~~~~~~-~---~ 283 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQ-------------------SAQMLGLD-N---L 283 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHH-------------------HHHHcCCC-c---E
Confidence 4679999999999999999862 5789999999999887776 44333432 2 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
++..+++.+.+.....+||+|++|--- ......+-..+..++|+++|.+.
T Consensus 284 ~~~~~d~~~~~~~~~~~~D~vi~DPPr--~G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 284 SFAALDSAKFATAQMSAPELVLVNPPR--RGIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred EEEECCHHHHHHhcCCCCCEEEECCCC--CCCcHHHHHHHHhcCCCeEEEEE
Confidence 889999887665444569999999543 22223332333458998877663
No 145
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.32 E-value=8.2e-06 Score=78.08 Aligned_cols=147 Identities=15% Similarity=0.176 Sum_probs=92.8
Q ss_pred hhhhccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccch
Q 041517 133 RRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNV 212 (327)
Q Consensus 133 ~~~~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~ 212 (327)
..++...| .=..+...+ .-++.++||||||+.||-+.-|+.. + ...|++||++.-..-..
T Consensus 95 DtEWrSd~-KW~rl~p~l-~~L~gk~VLDIGC~nGY~~frM~~~----G-A~~ViGiDP~~lf~~QF------------- 154 (315)
T PF08003_consen 95 DTEWRSDW-KWDRLLPHL-PDLKGKRVLDIGCNNGYYSFRMLGR----G-AKSVIGIDPSPLFYLQF------------- 154 (315)
T ss_pred cccccccc-hHHHHHhhh-CCcCCCEEEEecCCCcHHHHHHhhc----C-CCEEEEECCChHHHHHH-------------
Confidence 44555555 222344444 3467899999999999999999984 2 45799999976543211
Q ss_pred HHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC--CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 213 LLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG--HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 213 ~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~--h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.|++++. |.... +. ....+.+.|+. .+.||+||.=|- |. ..+...|..+...|+|||.+|++...-
T Consensus 155 ----~~i~~~l--g~~~~---~~-~lplgvE~Lp~-~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 155 ----EAIKHFL--GQDPP---VF-ELPLGVEDLPN-LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred ----HHHHHHh--CCCcc---EE-EcCcchhhccc-cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 1233332 11111 22 22234455666 578999998765 43 345788999999999999999877654
Q ss_pred CC-------------Cchh-----HHHHHHHHHHHcCCe
Q 041517 291 AA-------------DNRG-----VRRAVNLFAKINGLK 311 (327)
Q Consensus 291 ~~-------------~~~G-----V~~Av~~f~~~~gl~ 311 (327)
+. ..++ -..++..++++-|++
T Consensus 223 ~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 223 DGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFK 261 (315)
T ss_pred cCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCc
Confidence 11 1111 346777778777764
No 146
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.31 E-value=3.3e-06 Score=79.40 Aligned_cols=126 Identities=17% Similarity=0.073 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhh------cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHH
Q 041517 142 SYGAVFGNLIDK------VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLY 215 (327)
Q Consensus 142 ~~g~lL~~L~~~------~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~ 215 (327)
++..++...++. .++..++|+|||+|..++.|+.. ++ .+++++||.++....+|.+
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~---L~-~~~v~AiD~S~~Ai~La~e-------------- 190 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHG---LP-QCTVTAIDVSKAAIKLAKE-------------- 190 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhc---CC-CceEEEEeccHHHHHHHHH--------------
Confidence 555555554443 34668999999999999999984 66 8999999999988887766
Q ss_pred HHHHHHHhhhccCCcccceEe-eecchhhhhhhcCCcEeEEEE--------------------------cCCCCC-CcHH
Q 041517 216 FQFLQNVIYQNAIDSVLPVPF-SSGSALTKLCEWGVVGDLIEI--------------------------DAGHDF-NSAW 267 (327)
Q Consensus 216 ~~Fl~nv~~~g~~~~v~~V~~-~~gda~~~L~~l~~~fDLIfI--------------------------Da~h~~-~~v~ 267 (327)
|+...++.+++..+.+ ..++..+..+.+.+++|++.. ||..+. ....
T Consensus 191 -----N~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~ 265 (328)
T KOG2904|consen 191 -----NAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLV 265 (328)
T ss_pred -----HHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHH
Confidence 4545555555332322 244444433444567777753 333222 2244
Q ss_pred HHHHHHHccCCCCeEEEEEcCCC
Q 041517 268 ADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 268 ~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.++..+-++|+|||.+.+.-...
T Consensus 266 ~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 266 HYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred HHHHhhHhhcccCCeEEEEeccc
Confidence 56778889999999999876643
No 147
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.31 E-value=4.8e-06 Score=72.79 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=70.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++. ..+++++|.++.+.+.+++. +.. .++ +
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~-------------------~~~---~~~---v 61 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREK-------------------FAA---ADN---L 61 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHH-------------------hcc---CCC---E
Confidence 4568999999999999999883 57999999999888776652 211 112 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRI--LRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~l--L~pGGvIi~dD~ 288 (327)
++..+|+.+... .+..||.|+.+- +|+.....+..++.. +.++|++++..-
T Consensus 62 ~ii~~D~~~~~~-~~~~~d~vi~n~--Py~~~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 62 TVIHGDALKFDL-PKLQPYKVVGNL--PYNISTPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EEEECchhcCCc-cccCCCEEEECC--CcccHHHHHHHHHhcCCCcceEEEEEEHH
Confidence 788888776421 124689998764 344444666666653 447888887654
No 148
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.31 E-value=3.3e-06 Score=75.26 Aligned_cols=124 Identities=13% Similarity=0.135 Sum_probs=84.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+||++|||.|....-|++- +-.++++++|-+++..++|+... +..+..+. |+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~e----gf~~~L~GvDYs~~AV~LA~niA-------------------e~~~~~n~---I~ 121 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKE----GFQSKLTGVDYSEKAVELAQNIA-------------------ERDGFSNE---IR 121 (227)
T ss_pred ccceeeccCCchHHHHHHHHh----cCCCCccccccCHHHHHHHHHHH-------------------HhcCCCcc---ee
Confidence 459999999999999988884 44677999999999988875422 12344444 77
Q ss_pred eeecchhhhhhhcCCcEeEEE----Ec-----CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 236 FSSGSALTKLCEWGVVGDLIE----ID-----AGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIf----ID-----a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
|.+.|..+. .....+||+|. .| ++........|+....++|+|||+.++..++|. ..+.+++|..
T Consensus 122 f~q~DI~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T-----~dELv~~f~~ 195 (227)
T KOG1271|consen 122 FQQLDITDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT-----KDELVEEFEN 195 (227)
T ss_pred EEEeeccCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc-----HHHHHHHHhc
Confidence 776664442 12235677776 23 233222234688999999999999999999993 3466666654
Q ss_pred HcCCeE
Q 041517 307 INGLKV 312 (327)
Q Consensus 307 ~~gl~v 312 (327)
.++.+
T Consensus 196 -~~f~~ 200 (227)
T KOG1271|consen 196 -FNFEY 200 (227)
T ss_pred -CCeEE
Confidence 33443
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.29 E-value=5.4e-06 Score=83.51 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=74.9
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
++..+++.+ +..+|||+|||+|..++.+|+. ..+|+++|.++.+.+.|++ |+
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~-------------------n~ 339 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARE-------------------NA 339 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHH-------------------HH
Confidence 444444433 3479999999999999999984 4789999999999988876 33
Q ss_pred hhhccCCcccceEeeecchhhhhhh---cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCE---WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~---l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
...+.. + +.+..+|+.+.+.. .+.+||+|++|-.-. .....++.+ ..++|++++.+
T Consensus 340 ~~~~~~-~---v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~--g~~~~~~~l-~~~~~~~ivyv 398 (443)
T PRK13168 340 RRNGLD-N---VTFYHANLEEDFTDQPWALGGFDKVLLDPPRA--GAAEVMQAL-AKLGPKRIVYV 398 (443)
T ss_pred HHcCCC-c---eEEEEeChHHhhhhhhhhcCCCCEEEECcCCc--ChHHHHHHH-HhcCCCeEEEE
Confidence 333331 2 78888988775533 136799999986532 233455444 44788887665
No 150
>PLN02672 methionine S-methyltransferase
Probab=98.28 E-value=4.9e-06 Score=91.40 Aligned_cols=141 Identities=14% Similarity=0.084 Sum_probs=87.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccC-cc-ccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIP-MV-NGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~-~~-~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+.+|||+|||+|..++.++.. .+..+|+++|+++.+.+.|+++.... .. .|... + .....+..++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~----~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~-~-----~~~~~~l~~r--- 185 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEK----WLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV-Y-----DGEGKTLLDR--- 185 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc-c-----cccccccccc---
Confidence 468999999999999999984 34679999999999999998854310 00 00000 0 0000011223
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEc------CC----------CC----------CCc-------------HHHHHHHHH
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEID------AG----------HD----------FNS-------------AWADINRAW 274 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfID------a~----------h~----------~~~-------------v~~dl~~~~ 274 (327)
|.+..+|..+.+...+.+||+|+.. ++ |+ +.. ....++++.
T Consensus 186 V~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~ 265 (1082)
T PLN02672 186 VEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 265 (1082)
T ss_pred EEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHH
Confidence 8888888777554333479999842 11 10 000 134466778
Q ss_pred ccCCCCeEEEEEcCCCCCCchhHHHHHH-HHHHHcCCeEEEc
Q 041517 275 RILRPGGVIFGHDYFTAADNRGVRRAVN-LFAKINGLKVQID 315 (327)
Q Consensus 275 ~lL~pGGvIi~dD~~~~~~~~GV~~Av~-~f~~~~gl~v~~~ 315 (327)
++|+|||++++-=. . +-.++|. +++...|++....
T Consensus 266 ~~L~pgG~l~lEiG-~-----~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 266 SVIKPMGIMIFNMG-G-----RPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred HhccCCCEEEEEEC-c-----cHHHHHHHHHHHHCCCCeeEE
Confidence 89999998887333 2 2356777 5777788776543
No 151
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.23 E-value=5.3e-06 Score=74.82 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=69.8
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
.+||||||.|.+.+.+|.. .|+..+++||+.......+.+ .+...++. + +.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~----~Pd~n~iGiE~~~~~v~~a~~-------------------~~~~~~l~-N---v~~~ 72 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR----NPDINFIGIEIRKKRVAKALR-------------------KAEKRGLK-N---VRFL 72 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH----STTSEEEEEES-HHHHHHHHH-------------------HHHHHTTS-S---EEEE
T ss_pred eEEEecCCCCHHHHHHHHH----CCCCCEEEEecchHHHHHHHH-------------------HHHhhccc-c---eEEE
Confidence 8999999999999999984 569999999998765544322 22223332 2 8888
Q ss_pred ecchhhhhhhc--CCcEeEEEEcCCCCCCc---------HHHHHHHHHccCCCCeEEEE
Q 041517 238 SGSALTKLCEW--GVVGDLIEIDAGHDFNS---------AWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 238 ~gda~~~L~~l--~~~fDLIfIDa~h~~~~---------v~~dl~~~~~lL~pGGvIi~ 285 (327)
.+++...|..+ ++++|-|+|--.-+++. ....++.+.+.|+|||.|.+
T Consensus 73 ~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 73 RGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred EccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 99988877654 47999999853211111 23568899999999997765
No 152
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.22 E-value=1.2e-05 Score=74.44 Aligned_cols=103 Identities=20% Similarity=0.101 Sum_probs=75.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
...+||||||.|.+.+.||.. .|+..++|||+.......+-+ .+...++. .++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~----nP~~nfiGiEi~~~~v~~~l~-------------------k~~~~~l~----Nlr 101 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK----NPEKNFLGIEIRVPGVAKALK-------------------KIKELGLK----NLR 101 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH----CCCCCEEEEEEehHHHHHHHH-------------------HHHHcCCC----cEE
Confidence 358999999999999999984 668999999998765443322 33333432 389
Q ss_pred eeecchhhhhhhcC--CcEeEEEEc---CC----CCC--CcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEWG--VVGDLIEID---AG----HDF--NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l~--~~fDLIfID---a~----h~~--~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..+|+.+.|..+. ++.|-|+|- -. |.. --.-.-++.+.+.|+|||+|-+
T Consensus 102 i~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 102 LLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred EEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 99999999887763 488888884 22 211 0012568999999999998887
No 153
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=1.2e-06 Score=80.95 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=71.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||||||.|-+...+.+. .-.++-+|+++|.++...++.++....+. .....|..++
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~--~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-----~~~~afv~Dl------------- 131 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKT--SPNNRLKVYACDFSPRAIELVKKSSGYDE-----SRVEAFVWDL------------- 131 (264)
T ss_pred hhhheeeccCCCcccchhhhc--CCCCCeEEEEcCCChHHHHHHHhccccch-----hhhcccceec-------------
Confidence 458999999999999999985 12234899999999998887766432110 1011111111
Q ss_pred eeecchhhhhhhcCCcEe---EEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGD---LIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fD---LIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
. ++.... +--.+.+| +||+=....-+.....++.+.++|+|||.|++-||..
T Consensus 132 -t-~~~~~~-~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 132 -T-SPSLKE-PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred -c-chhccC-CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 1 111110 00123444 5565444334556789999999999999999999987
No 154
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.20 E-value=1e-05 Score=72.36 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=78.9
Q ss_pred HHHHHHHHhh-cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 144 GAVFGNLIDK-VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 144 g~lL~~L~~~-~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
..++..|-.. ....++||+-+|+|..++-.+.- | -.+|+.||.+.......++ |+
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSR----G-A~~v~fVE~~~~a~~~i~~-------------------N~ 85 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSR----G-AKSVVFVEKNRKAIKIIKK-------------------NL 85 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT----T--SEEEEEES-HHHHHHHHH-------------------HH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCccHHHHHhc----C-CCeEEEEECCHHHHHHHHH-------------------HH
Confidence 3466666555 78899999999999999975541 2 4689999998776655444 55
Q ss_pred hhhccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCCCc-HHHHHHHHH--ccCCCCeEEEEEcCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDFNS-AWADINRAW--RILRPGGVIFGHDYF 289 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~-v~~dl~~~~--~lL~pGGvIi~dD~~ 289 (327)
...+..++ +....+|+...+..+ +.+||+||+|--..... ....++.+. .+|+++|+|++---.
T Consensus 86 ~~l~~~~~---~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 86 EKLGLEDK---IRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHT-GGG---EEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHhCCCcc---eeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 55554444 777788887777554 68999999996554443 245566665 799999998885543
No 155
>PHA03412 putative methyltransferase; Provisional
Probab=98.17 E-value=1.6e-05 Score=73.91 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=82.7
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
....+|||+|||+|..++.+++.+.. .+..+|++||+++.+.+.|+++ +..
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~-~~~~~V~aVEID~~Al~~Ar~n-------------------~~~--------- 98 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMY-AKPREIVCVELNHTYYKLGKRI-------------------VPE--------- 98 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhccc-CCCcEEEEEECCHHHHHHHHhh-------------------ccC---------
Confidence 35789999999999999999985321 2357999999999988887652 211
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcC------------CCCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh----
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDA------------GHDF-NSAWADINRAWRILRPGGVIFGHDYFTAADNRG---- 296 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa------------~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G---- 296 (327)
+.+..+|.... .++.+||+|+.+- .|+. .....-++.+.+++++|+.|+=..... -+|.|
T Consensus 99 ~~~~~~D~~~~--~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~-~~y~~~~~~ 175 (241)
T PHA03412 99 ATWINADALTT--EFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSAN-FRYSGTHYF 175 (241)
T ss_pred CEEEEcchhcc--cccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccccc-CcccCccce
Confidence 44555555432 1246899998641 1211 112345778888888888866544433 22222
Q ss_pred ------HHHHHHHHHHHcCCeEE
Q 041517 297 ------VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 297 ------V~~Av~~f~~~~gl~v~ 313 (327)
--+.++.|.++.|+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~ 198 (241)
T PHA03412 176 RQDESTTSSKCKKFLDETGLEMN 198 (241)
T ss_pred eeccCcccHHHHHHHHhcCeeec
Confidence 23567788888887654
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.13 E-value=2e-05 Score=69.63 Aligned_cols=110 Identities=19% Similarity=0.131 Sum_probs=59.1
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc--cCCc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN--AIDS 230 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g--~~~~ 230 (327)
..++++|||+|||+|..++.+|.. ....+|+.-|..+ ..+..+. |+...+ ...+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~----~~~~~Vv~TD~~~-~l~~l~~-------------------Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKL----FGAARVVLTDYNE-VLELLRR-------------------NIELNGSLLDGR 98 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-----T-SEEEEEE-S--HHHHHHH-------------------HHHTT-------
T ss_pred hcCCceEEEECCccchhHHHHHhc----cCCceEEEeccch-hhHHHHH-------------------HHHhcccccccc
Confidence 345789999999999999999984 3478999999987 5554444 333322 1222
Q ss_pred ccceEeeecchh-hhhhhcCCcEeEEE-EcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 231 VLPVPFSSGSAL-TKLCEWGVVGDLIE-IDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 231 v~~V~~~~gda~-~~L~~l~~~fDLIf-IDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+....+.-++.. .... -..+||+|+ -|.-........-++.+..+|+++|.+++-.
T Consensus 99 v~v~~L~Wg~~~~~~~~-~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 99 VSVRPLDWGDELDSDLL-EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp -EEEE--TTS-HHHHHH-S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ccCcEEEecCccccccc-ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 111222223322 1111 135899988 4655544444556778888999987644433
No 157
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.10 E-value=9.9e-06 Score=74.99 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=86.2
Q ss_pred HHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.+..+..... .+.++|+|||+|..++.+|+. -.+|+++|+++.|++++++...+ ..
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~------~k~VIatD~s~~mL~~a~k~~~~-----------------~y 79 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEH------YKEVIATDVSEAMLKVAKKHPPV-----------------TY 79 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHh------hhhheeecCCHHHHHHhhcCCCc-----------------cc
Confidence 5566665554 348999999999888888885 57899999999999988764321 11
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCe-EEEEEcCC-CCCCchhHHHHH
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGG-VIFGHDYF-TAADNRGVRRAV 301 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGG-vIi~dD~~-~~~~~~GV~~Av 301 (327)
+-.|..+.+.+..+. -.-++++|||..- |-| +-+-.+.+..+.+.||+.| +|++=.|. .-..+|.+-.-.
T Consensus 80 -----~~t~~~ms~~~~v~L-~g~e~SVDlI~~Aqa~H-WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~ 152 (261)
T KOG3010|consen 80 -----CHTPSTMSSDEMVDL-LGGEESVDLITAAQAVH-WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVM 152 (261)
T ss_pred -----ccCCccccccccccc-cCCCcceeeehhhhhHH-hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHH
Confidence 111233333332222 2225799999865 445 4444567889999999855 99988887 334566655555
Q ss_pred HHHHH
Q 041517 302 NLFAK 306 (327)
Q Consensus 302 ~~f~~ 306 (327)
.++..
T Consensus 153 ~r~~~ 157 (261)
T KOG3010|consen 153 LRLYD 157 (261)
T ss_pred HHHhh
Confidence 55544
No 158
>PHA03411 putative methyltransferase; Provisional
Probab=98.09 E-value=3.9e-05 Score=72.78 Aligned_cols=124 Identities=10% Similarity=0.065 Sum_probs=80.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..++|||+|||+|..++.++.. ....+|+++|+++.+.+.+++. .. + +
T Consensus 64 ~~grVLDLGcGsGilsl~la~r----~~~~~V~gVDisp~al~~Ar~n-------------------~~------~---v 111 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHR----CKPEKIVCVELNPEFARIGKRL-------------------LP------E---A 111 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHh-------------------Cc------C---C
Confidence 3579999999999998888773 2257999999999888776552 11 1 5
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC--C----c---------------HHHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF--N----S---------------AWADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~----~---------------v~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
.+..+|..+.. .+..||+|+.+-..-. . . ...-+...-.+|+|+|.+.+. |.-.+-
T Consensus 112 ~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~ 188 (279)
T PHA03411 112 EWITSDVFEFE--SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPY 188 (279)
T ss_pred EEEECchhhhc--ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eecccc
Confidence 56677766643 2467999998643211 0 0 123345556788999966554 443333
Q ss_pred chh--HHHHHHHHHHHcCCeEE
Q 041517 294 NRG--VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 294 ~~G--V~~Av~~f~~~~gl~v~ 313 (327)
|.+ -....+.+.+.+|+.+.
T Consensus 189 y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 189 YDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred ccccCCHHHHHHHHHhcCcEec
Confidence 333 34666777788887654
No 159
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.07 E-value=3.4e-05 Score=75.90 Aligned_cols=87 Identities=14% Similarity=-0.015 Sum_probs=63.7
Q ss_pred HHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 145 AVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 145 ~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
.++..+.+... ..+|||++||+|..++.+++. ..+|++||.++.+.+.+++ |+
T Consensus 194 ~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~------~~~v~~vE~~~~ai~~a~~-------------------N~ 248 (362)
T PRK05031 194 KMLEWALDATKGSKGDLLELYCGNGNFTLALARN------FRRVLATEISKPSVAAAQY-------------------NI 248 (362)
T ss_pred HHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh------CCEEEEEECCHHHHHHHHH-------------------HH
Confidence 45555554443 358999999999999999984 3589999999999988776 44
Q ss_pred hhhccCCcccceEeeecchhhhhhhc---------------CCcEeEEEEcCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEW---------------GVVGDLIEIDAG 260 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l---------------~~~fDLIfIDa~ 260 (327)
...+.. + +.+..+|+.+.++.+ +.+||+|++|--
T Consensus 249 ~~~~~~-~---v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 249 AANGID-N---VQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred HHhCCC-c---EEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCC
Confidence 433432 2 888889988876543 125899999965
No 160
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.06 E-value=2.1e-05 Score=77.96 Aligned_cols=99 Identities=18% Similarity=0.108 Sum_probs=75.7
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||++||+|..++.+|.. .+ ..+|+++|.++...+.+++ |+...+..+ +.+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~---~~-~~~V~a~Din~~Av~~a~~-------------------N~~~N~~~~----~~v 111 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALE---TG-VEKVTLNDINPDAVELIKK-------------------NLELNGLEN----EKV 111 (382)
T ss_pred CEEEECCCcccHHHHHHHHH---CC-CCEEEEEeCCHHHHHHHHH-------------------HHHHhCCCc----eEE
Confidence 58999999999999999874 22 3589999999998887776 444434321 567
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+|+.+.+.. ...||+|++|-- -.....++.++..+++||+|.+.
T Consensus 112 ~~~Da~~~l~~-~~~fD~V~lDP~---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 112 FNKDANALLHE-ERKFDVVDIDPF---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EhhhHHHHHhh-cCCCCEEEECCC---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 78888776653 467999999963 22346778888999999999986
No 161
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=4.3e-05 Score=71.97 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
....++-..++.....+|+|-|||+|..+..++++ ++|.|+++++|..+.-.+.|.+ .
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiara---V~ptGhl~tfefH~~Ra~ka~e-------------------e 149 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARA---VAPTGHLYTFEFHETRAEKALE-------------------E 149 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHh---hCcCcceEEEEecHHHHHHHHH-------------------H
Confidence 33445555556666789999999999999999996 7889999999996554444433 2
Q ss_pred HhhhccCCcccceEeeecchhh-hhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCCCchhHHH
Q 041517 222 VIYQNAIDSVLPVPFSSGSALT-KLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGG-VIFGHDYFTAADNRGVRR 299 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~-~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGG-vIi~dD~~~~~~~~GV~~ 299 (327)
...-+..++ +.+..-|... .+..-...+|.||+|-- .+|..+-.++++|+-+| ++|. .+|=...|.+
T Consensus 150 Fr~hgi~~~---vt~~hrDVc~~GF~~ks~~aDaVFLDlP----aPw~AiPha~~~lk~~g~r~cs----FSPCIEQvqr 218 (314)
T KOG2915|consen 150 FREHGIGDN---VTVTHRDVCGSGFLIKSLKADAVFLDLP----APWEAIPHAAKILKDEGGRLCS----FSPCIEQVQR 218 (314)
T ss_pred HHHhCCCcc---eEEEEeecccCCccccccccceEEEcCC----ChhhhhhhhHHHhhhcCceEEe----ccHHHHHHHH
Confidence 222234444 3333322111 11111367999999964 46688888999999877 4432 1233456777
Q ss_pred HHHHHHHH
Q 041517 300 AVNLFAKI 307 (327)
Q Consensus 300 Av~~f~~~ 307 (327)
.++.+..-
T Consensus 219 tce~l~~~ 226 (314)
T KOG2915|consen 219 TCEALRSL 226 (314)
T ss_pred HHHHHHhC
Confidence 77777553
No 162
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.03 E-value=1.4e-05 Score=74.18 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=79.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCc------c----ccch-----------
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPM------V----NGNV----------- 212 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~------~----~g~~----------- 212 (327)
..+..+|||||-.|..|+.||.-+ + ...|+|+|+++-....|++..+... . +++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F---~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDF---G-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhh---c-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 468999999999999999999963 3 6679999999999888877542111 1 0000
Q ss_pred ---HHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEE-------cCCCCCCcHHHHHHHHHccCCCCeE
Q 041517 213 ---LLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEI-------DAGHDFNSAWADINRAWRILRPGGV 282 (327)
Q Consensus 213 ---~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfI-------Da~h~~~~v~~dl~~~~~lL~pGGv 282 (327)
...-+|..|+.... .+ ..+... +.|......||.|+. =-+|..+..+..+..++++|.|||+
T Consensus 133 a~~a~t~~~p~n~~f~~--~n---~vle~~---dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQK--EN---YVLESD---DFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI 204 (288)
T ss_pred ccccccccCCcchhccc--cc---EEEecc---hhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE
Confidence 00001222222110 00 222222 233223478999873 2334446788899999999999999
Q ss_pred EEEEcCCC
Q 041517 283 IFGHDYFT 290 (327)
Q Consensus 283 Ii~dD~~~ 290 (327)
+|+--=.|
T Consensus 205 LvvEPQpW 212 (288)
T KOG2899|consen 205 LVVEPQPW 212 (288)
T ss_pred EEEcCCch
Confidence 99976665
No 163
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.03 E-value=4.8e-05 Score=74.61 Aligned_cols=108 Identities=11% Similarity=-0.069 Sum_probs=71.5
Q ss_pred HHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 145 AVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 145 ~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
.++..+.+..+ +.+|||+|||+|..++.+++. ..+|++||.++.+.+.+++ |+
T Consensus 185 ~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~------~~~v~~vE~~~~av~~a~~-------------------n~ 239 (353)
T TIGR02143 185 KMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN------FRRVLATEIAKPSVNAAQY-------------------NI 239 (353)
T ss_pred HHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh------CCEEEEEECCHHHHHHHHH-------------------HH
Confidence 45555555443 457999999999999999985 3589999999999988876 44
Q ss_pred hhhccCCcccceEeeecchhhhhhhc---------C------CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEW---------G------VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l---------~------~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
...+.. + +++..+++.+.++.. . ..||+||+|---.. -....++.+.+ |+++|.+
T Consensus 240 ~~~~~~-~---v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G-~~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 240 AANNID-N---VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG-LDPDTCKLVQA---YERILYI 309 (353)
T ss_pred HHcCCC-c---EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC-CcHHHHHHHHc---CCcEEEE
Confidence 333332 2 788888888766531 1 23899999965211 11233344433 6665555
No 164
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.99 E-value=1.8e-05 Score=79.96 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=73.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
...|++||||+|-.....+++.+..+...+|++||-++......++ .+...+..++ |.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~-------------------~v~~n~w~~~---V~ 244 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQK-------------------RVNANGWGDK---VT 244 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHH-------------------HHHHTTTTTT---EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHH-------------------HHHhcCCCCe---EE
Confidence 4689999999999988888775445556899999998754432221 1233455556 89
Q ss_pred eeecchhhhhhhcCCcEeEEEEc---CCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEID---AGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfID---a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+++++..+. .+++++|+|+.. .--.++-.-+.|....+.|+|||++|=.-+
T Consensus 245 vi~~d~r~v--~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~ 298 (448)
T PF05185_consen 245 VIHGDMREV--ELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSY 298 (448)
T ss_dssp EEES-TTTS--CHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEE
T ss_pred EEeCcccCC--CCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcch
Confidence 999998774 345799999965 222334455788999999999999984433
No 165
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.98 E-value=2.2e-05 Score=70.09 Aligned_cols=90 Identities=10% Similarity=-0.096 Sum_probs=59.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++. ....+++||+++.+.+.+++. + +
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~i~~a~~~-----------------------~-------~ 57 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-----KQVRGYGIEIDQDGVLACVAR-----------------------G-------V 57 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-----cCCcEEEEeCCHHHHHHHHHc-----------------------C-------C
Confidence 3569999999999999888763 145789999988776544320 1 3
Q ss_pred Eeeecchhhhhh-hcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCC
Q 041517 235 PFSSGSALTKLC-EWGVVGDLIEIDAG-HDFNSAWADINRAWRILRP 279 (327)
Q Consensus 235 ~~~~gda~~~L~-~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~p 279 (327)
++..++..+.++ ..+++||+|+.-.. |........++++.+.+++
T Consensus 58 ~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 58 NVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred eEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 444555544332 22468999998643 3234556677887776654
No 166
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=97.96 E-value=8.9e-05 Score=67.68 Aligned_cols=121 Identities=18% Similarity=0.142 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCcchH--HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 143 YGAVFGNLIDKVRPRVIIEVGSFLGA--SALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 143 ~g~lL~~L~~~~~p~~VLEIGt~~G~--Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
..+|+..|+.-..++.|+|+.+..|. +|+.||.+.+ ..+|+++||-+.++.....++
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr--~TgGR~vCIvp~~~~~~~~~~------------------- 87 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR--QTGGRHVCIVPDEQSLSEYKK------------------- 87 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH--hcCCeEEEEcCChhhHHHHHH-------------------
Confidence 45799999988889999999887653 5788887754 568999999998765432222
Q ss_pred HHhhhccCCcccceEeeecchh-hhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 221 NVIYQNAIDSVLPVPFSSGSAL-TKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~-~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+...+..+. ++|..|++. +.++.+ ..+||++||+...... ...|+ +.++-+.|.|++..|.+.
T Consensus 88 ~l~~~~~~~~---vEfvvg~~~e~~~~~~-~~iDF~vVDc~~~d~~-~~vl~-~~~~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 88 ALGEAGLSDV---VEFVVGEAPEEVMPGL-KGIDFVVVDCKREDFA-ARVLR-AAKLSPRGAVVVCYNAFS 152 (218)
T ss_pred HHhhcccccc---ceEEecCCHHHHHhhc-cCCCEEEEeCCchhHH-HHHHH-HhccCCCceEEEEecccc
Confidence 2223344444 788888854 566666 4699999999863211 12333 344445678899988876
No 167
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.95 E-value=0.00013 Score=65.45 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=82.6
Q ss_pred HHHHHHHHh-hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 144 GAVFGNLID-KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 144 g~lL~~L~~-~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
..++..|.. .....++||+=+|+|..++-.+.- + -.+++.||.+.......++ |+
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR----G-A~~~~~vE~~~~a~~~l~~-------------------N~ 86 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSR----G-AARVVFVEKDRKAVKILKE-------------------NL 86 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhC----C-CceEEEEecCHHHHHHHHH-------------------HH
Confidence 346666665 378899999999999999886651 2 5689999998766554444 66
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCc--EeEEEEcCCCCCCcH--HHHHHH--HHccCCCCeEEEEEcC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVV--GDLIEIDAGHDFNSA--WADINR--AWRILRPGGVIFGHDY 288 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~--fDLIfIDa~h~~~~v--~~dl~~--~~~lL~pGGvIi~dD~ 288 (327)
...++... +.+...++...|+..+.. ||+||+|--....-. ...+.. -..+|+|||+|++.--
T Consensus 87 ~~l~~~~~---~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 87 KALGLEGE---ARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHhCCccc---eEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 65555445 777888888877777655 999999965432222 222333 2367999999998544
No 168
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.95 E-value=6.2e-05 Score=74.48 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=78.3
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
-+|||..||+|.-++.++.- .+.-.+|+++|.++...+..++ |+...+.. .+.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e---~~ga~~Vv~nD~n~~Av~~i~~-------------------N~~~N~~~----~~~v 99 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHE---IEGVREVFANDINPKAVESIKN-------------------NVEYNSVE----NIEV 99 (374)
T ss_pred CEEEECCCchhHHHHHHHhh---CCCCCEEEEEeCCHHHHHHHHH-------------------HHHHhCCC----cEEE
Confidence 48999999999999999873 2223689999999988876665 44433332 2678
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+|+...+.....+||+|++|-- ......++.+.+.+++||+|.+.
T Consensus 100 ~~~Da~~~l~~~~~~fDvIdlDPf---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 100 PNEDAANVLRYRNRKFHVIDIDPF---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EchhHHHHHHHhCCCCCEEEeCCC---CCcHHHHHHHHHhcccCCEEEEE
Confidence 888988887765678999999973 23347899999999999999887
No 169
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.91 E-value=8.6e-05 Score=67.48 Aligned_cols=146 Identities=18% Similarity=0.152 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcC-CC-EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 144 GAVFGNLIDKVR-PR-VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 144 g~lL~~L~~~~~-p~-~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+++.|.+.++ .+ +|||||||+|.-+.++|+. ++ .-+-..-|.++....--+. .
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~---lP-~l~WqPSD~~~~~~~sI~a-------------------~ 68 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQA---LP-HLTWQPSDPDDNLRPSIRA-------------------W 68 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHH---CC-CCEEcCCCCChHHHhhHHH-------------------H
Confidence 445666655554 34 4999999999999999996 33 5666666776654211111 1
Q ss_pred HhhhccCCcccceEeeecchhhhhh----hcCCcEeEEEE-cCCC--CCCcHHHHHHHHHccCCCCeEEEEEcCCC----
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLC----EWGVVGDLIEI-DAGH--DFNSAWADINRAWRILRPGGVIFGHDYFT---- 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~----~l~~~fDLIfI-Da~h--~~~~v~~dl~~~~~lL~pGGvIi~dD~~~---- 290 (327)
+...++.+-..|+.+.......... ....+||.||. .--| ++..+..-++.+-++|++||++++=.-+.
T Consensus 69 ~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~ 148 (204)
T PF06080_consen 69 IAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGK 148 (204)
T ss_pred HHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCE
Confidence 2222332222234432221111111 12368999984 3334 34556677899999999999999833222
Q ss_pred ----------------CCCchhHH--HHHHHHHHHcCCeEE
Q 041517 291 ----------------AADNRGVR--RAVNLFAKINGLKVQ 313 (327)
Q Consensus 291 ----------------~~~~~GV~--~Av~~f~~~~gl~v~ 313 (327)
+|. -|+| +.++.++..+|+++.
T Consensus 149 ~ts~SN~~FD~sLr~rdp~-~GiRD~e~v~~lA~~~GL~l~ 188 (204)
T PF06080_consen 149 FTSESNAAFDASLRSRDPE-WGIRDIEDVEALAAAHGLELE 188 (204)
T ss_pred eCCcHHHHHHHHHhcCCCC-cCccCHHHHHHHHHHCCCccC
Confidence 121 1443 457788888888754
No 170
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.90 E-value=5.6e-05 Score=69.41 Aligned_cols=139 Identities=13% Similarity=0.001 Sum_probs=80.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh--hccCCccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY--QNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~--~g~~~~v~ 232 (327)
...+||..|||.|+-.++||+. +.+|++||+++...+.+.+......... .+.. .-..++
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~----------~~~~~~~~~~~~-- 98 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVT----------SVGGFKRYQAGR-- 98 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECT----------TCTTEEEETTSS--
T ss_pred CCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcc----------cccceeeecCCc--
Confidence 3469999999999999999984 7899999999887765422111000000 0000 001122
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCC-C--CCCcHHHHHHHHHccCCCCeE--EEEEcCCCC----CCchhHHHHHHH
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAG-H--DFNSAWADINRAWRILRPGGV--IFGHDYFTA----ADNRGVRRAVNL 303 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~-h--~~~~v~~dl~~~~~lL~pGGv--Ii~dD~~~~----~~~~GV~~Av~~ 303 (327)
|.+..||..+.=+...++||+|+=-+. + ....-.++.+.+.++|+|||. ++.-++... |.+.--.+.+.+
T Consensus 99 -i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~ 177 (218)
T PF05724_consen 99 -ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRE 177 (218)
T ss_dssp -EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHH
T ss_pred -eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHH
Confidence 888899877632333358999985433 1 123344678999999999998 555444431 222223455555
Q ss_pred HHHHcCCeEE
Q 041517 304 FAKINGLKVQ 313 (327)
Q Consensus 304 f~~~~gl~v~ 313 (327)
+.. .+++|.
T Consensus 178 l~~-~~f~i~ 186 (218)
T PF05724_consen 178 LFG-PGFEIE 186 (218)
T ss_dssp HHT-TTEEEE
T ss_pred Hhc-CCcEEE
Confidence 555 555544
No 171
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.86 E-value=2.8e-05 Score=68.42 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=55.0
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
..|+|+.||.|..++.+|+. ..+|++||+++...+.++. |....|..++ |.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~------~~~Viaidid~~~~~~a~h-------------------Na~vYGv~~~---I~~ 52 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART------FDRVIAIDIDPERLECAKH-------------------NAEVYGVADN---IDF 52 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT------T-EEEEEES-HHHHHHHHH-------------------HHHHTT-GGG---EEE
T ss_pred CEEEEeccCcCHHHHHHHHh------CCeEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---EEE
Confidence 36999999999999999995 5789999999988888776 6666676666 999
Q ss_pred eecchhhhhhhcC-C-cEeEEEEc
Q 041517 237 SSGSALTKLCEWG-V-VGDLIEID 258 (327)
Q Consensus 237 ~~gda~~~L~~l~-~-~fDLIfID 258 (327)
..||..+.++.+. . .+|+||++
T Consensus 53 i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 53 ICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EES-HHHHGGGB------SEEEE-
T ss_pred EeCCHHHHHhhccccccccEEEEC
Confidence 9999999887753 2 28999998
No 172
>PRK00536 speE spermidine synthase; Provisional
Probab=97.84 E-value=9.3e-05 Score=69.84 Aligned_cols=105 Identities=13% Similarity=-0.025 Sum_probs=74.6
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
.-.|++||=||-|-|..+.-+.+. + .+|+.||++++..+.++++.. .+.. ++.+.-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh----~--~~v~mVeID~~Vv~~~k~~lP----------------~~~~-~~~DpR- 125 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY----D--THVDFVQADEKILDSFISFFP----------------HFHE-VKNNKN- 125 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc----C--CeeEEEECCHHHHHHHHHHCH----------------HHHH-hhcCCC-
Confidence 346899999999999999988873 3 499999999999999888542 1111 122211
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+++... ....-.++||+|++|... .. ..++.+.+.|+|||+++..--..
T Consensus 126 -v~l~~~----~~~~~~~~fDVIIvDs~~--~~--~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 126 -FTHAKQ----LLDLDIKKYDLIICLQEP--DI--HKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred -EEEeeh----hhhccCCcCCEEEEcCCC--Ch--HHHHHHHHhcCCCcEEEECCCCc
Confidence 444431 111113689999999753 33 67889999999999999975543
No 173
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00025 Score=63.61 Aligned_cols=117 Identities=20% Similarity=0.138 Sum_probs=76.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..+.|+|+|||+|..++..+. ++ ..+|+|||+++++.+.++++ ... +.+. |
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~----lG-a~~V~~vdiD~~a~ei~r~N-------------------~~~--l~g~---v 95 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL----LG-ASRVLAVDIDPEALEIARAN-------------------AEE--LLGD---V 95 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh----cC-CcEEEEEecCHHHHHHHHHH-------------------HHh--hCCc---e
Confidence 467899999999999998775 34 58999999999999988874 332 2223 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC---CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD---FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~---~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
++...|..+ ...++|.++.+--.. ...=+..++.+++.- ..+--+| .-|.+..+..++...|.+
T Consensus 96 ~f~~~dv~~----~~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s--~vVYsiH-------~a~~~~f~~~~~~~~G~~ 162 (198)
T COG2263 96 EFVVADVSD----FRGKFDTVIMNPPFGSQRRHADRPFLLKALEIS--DVVYSIH-------KAGSRDFVEKFAADLGGT 162 (198)
T ss_pred EEEEcchhh----cCCccceEEECCCCccccccCCHHHHHHHHHhh--heEEEee-------ccccHHHHHHHHHhcCCe
Confidence 787777554 356788888873211 111123344444432 1222233 345789999999999866
Q ss_pred EE
Q 041517 312 VQ 313 (327)
Q Consensus 312 v~ 313 (327)
+.
T Consensus 163 v~ 164 (198)
T COG2263 163 VT 164 (198)
T ss_pred EE
Confidence 54
No 174
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.83 E-value=6.7e-05 Score=69.36 Aligned_cols=113 Identities=9% Similarity=-0.091 Sum_probs=71.0
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCc--cccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPM--VNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~--~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++||..|||.|.-++|||+. +.+|++||+++...+.+.+...... ..+. ......+ ..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~--------~~~~~~~-----~~ 104 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGN--------DYKLYKG-----DD 104 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceeccc--------ccceecc-----Cc
Confidence 479999999999999999984 7789999999987764422111110 0000 0000001 12
Q ss_pred eEeeecchhhhhh--hcCCcEeEEEEcCCC-CC--CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLC--EWGVVGDLIEIDAGH-DF--NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~--~l~~~fDLIfIDa~h-~~--~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
|.+..+|..+.=+ ...+.||+|+--+.. .. +.-.++.+.+.++|+|||.+++--
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 7888888766311 223689998865431 12 223457889999999999665443
No 175
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.81 E-value=0.00018 Score=68.96 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.1
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
++..+++.. +..+|||||||.|..|..++.. ..+|+++|+++.+.+.+++ ++
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~-------------------~~ 78 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKK-------------------RF 78 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHH-------------------HH
Confidence 444444432 4578999999999999999874 5689999999999887765 22
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHH
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAW 274 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~ 274 (327)
...+..++ +++..+|+.+. .+ ..||.|+. +.+|+-....+..++
T Consensus 79 ~~~~~~~~---v~ii~~Dal~~--~~-~~~d~Vva--NlPY~Istpil~~ll 122 (294)
T PTZ00338 79 QNSPLASK---LEVIEGDALKT--EF-PYFDVCVA--NVPYQISSPLVFKLL 122 (294)
T ss_pred HhcCCCCc---EEEEECCHhhh--cc-cccCEEEe--cCCcccCcHHHHHHH
Confidence 22222223 88889988763 11 35788774 455553333333333
No 176
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.78 E-value=5e-05 Score=68.92 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+...|++..||-|++++.+|+. +...+|+++|.++...+..++ |+...++.++ |
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~----~~~~~V~A~d~Np~a~~~L~~-------------------Ni~lNkv~~~---i 154 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKH----GKAKRVYAVDLNPDAVEYLKE-------------------NIRLNKVENR---I 154 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHH----T-SSEEEEEES-HHHHHHHHH-------------------HHHHTT-TTT---E
T ss_pred cceEEEEccCCccHHHHHHhhh----cCccEEEEecCCHHHHHHHHH-------------------HHHHcCCCCe---E
Confidence 4679999999999999999984 447899999999877765544 6666666666 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
....+|+.+.++ ...+|-|+.+--+. ....++.+..++++||+|.+
T Consensus 155 ~~~~~D~~~~~~--~~~~drvim~lp~~---~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 155 EVINGDAREFLP--EGKFDRVIMNLPES---SLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp EEEES-GGG-----TT-EEEEEE--TSS---GGGGHHHHHHHEEEEEEEEE
T ss_pred EEEcCCHHHhcC--ccccCEEEECChHH---HHHHHHHHHHHhcCCcEEEC
Confidence 778999888765 57899999976542 23678889999999999864
No 177
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.74 E-value=0.00011 Score=67.51 Aligned_cols=102 Identities=12% Similarity=0.000 Sum_probs=71.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+++-|||||||+|.|+-.+... +...+++|+++.|.++|.+ . .++ -
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~-~-----------------e~e----------g 95 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVE-R-----------------ELE----------G 95 (270)
T ss_pred CCcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHH-h-----------------hhh----------c
Confidence 3789999999999999887763 7899999999999998764 1 111 0
Q ss_pred EeeecchhhhhhhcCCcEeEEEE--------cCCCCCCcHH----HHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI--------DAGHDFNSAW----ADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI--------Da~h~~~~v~----~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.++.+|--+.|+...+.||-+++ .++.+++.+. ..+..++..|++|+.-++.=|-.
T Consensus 96 dlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 96 DLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 12223333455666788887763 4555554433 34667888999999999976654
No 178
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.70 E-value=0.0004 Score=67.83 Aligned_cols=127 Identities=19% Similarity=0.205 Sum_probs=97.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|++.=+|-|+.|+.+|.. +. .+|+++|+++...+..++ |+...+..++ |
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~----g~-~~V~A~diNP~A~~~L~e-------------------Ni~LN~v~~~---v 240 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKK----GR-PKVYAIDINPDAVEYLKE-------------------NIRLNKVEGR---V 240 (341)
T ss_pred CCCEEEEccCCcccchhhhhhc----CC-ceEEEEecCHHHHHHHHH-------------------HHHhcCccce---e
Confidence 3679999999999999999985 32 239999999987765554 7776666666 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh-HHHHHHHHHHHcCCeE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRG-VRRAVNLFAKINGLKV 312 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G-V~~Av~~f~~~~gl~v 312 (327)
....||+.+..+.+ +.+|-|++.--+. ....+..+...+++||+|-+++...+....+ +.+.+..++...|.++
T Consensus 241 ~~i~gD~rev~~~~-~~aDrIim~~p~~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 241 EPILGDAREVAPEL-GVADRIIMGLPKS---AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred eEEeccHHHhhhcc-ccCCEEEeCCCCc---chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence 78899999987665 6799999875542 2367889999999999999999987432222 6788888888776543
No 179
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.69 E-value=3.2e-05 Score=71.30 Aligned_cols=139 Identities=17% Similarity=0.102 Sum_probs=85.0
Q ss_pred HHHHHHHhhcC---CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKVR---PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~~---p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.+|..++.... -+++|++|||+|.++..+-.+ -.++++||+++.|.+.|.+.. .|++
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~------a~~ltGvDiS~nMl~kA~eKg----------~YD~---- 171 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM------ADRLTGVDISENMLAKAHEKG----------LYDT---- 171 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHH------HhhccCCchhHHHHHHHHhcc----------chHH----
Confidence 45666665554 368999999999999888765 467899999999999887632 1111
Q ss_pred HhhhccCCcccceEeeecchhhhhh-hcCCcEeEEEEcCCCCCCcHH-HHHHHHHccCCCCeEEEEEcCCC---------
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLC-EWGVVGDLIEIDAGHDFNSAW-ADINRAWRILRPGGVIFGHDYFT--------- 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~-~l~~~fDLIfIDa~h~~~~v~-~dl~~~~~lL~pGGvIi~dD~~~--------- 290 (327)
+. ++++...+. .-+++||+|.----..|-..+ .-+-.+..+|+|||.++|.-=--
T Consensus 172 L~--------------~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ 237 (287)
T COG4976 172 LY--------------VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLG 237 (287)
T ss_pred HH--------------HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecc
Confidence 11 111111122 114688988631111121111 22445677999999999852211
Q ss_pred -CCCchhHHHHHHHHHHHcCCeEEEccc
Q 041517 291 -AADNRGVRRAVNLFAKINGLKVQIDGQ 317 (327)
Q Consensus 291 -~~~~~GV~~Av~~f~~~~gl~v~~~gq 317 (327)
+..|--....|...+...|+.+..+.+
T Consensus 238 ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 238 PSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred hhhhhccchHHHHHHHHhcCceEEEeec
Confidence 112223567788889999998775544
No 180
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.69 E-value=0.00013 Score=67.03 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||.|.|..+..+++. .|+.+++.+|. ++..+.+++ .++ |
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~v~~~~~~--------------------------~~r---v 145 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARA----YPNLRATVFDL-PEVIEQAKE--------------------------ADR---V 145 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHH----STTSEEEEEE--HHHHCCHHH--------------------------TTT---E
T ss_pred CccEEEeccCcchHHHHHHHHH----CCCCcceeecc-Hhhhhcccc--------------------------ccc---c
Confidence 4679999999999999999985 45889999998 222221111 334 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCC--CcHHHHHHHHHccCCCC--eEEEEEcCCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDF--NSAWADINRAWRILRPG--GVIFGHDYFTA 291 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~--~~v~~dl~~~~~lL~pG--GvIi~dD~~~~ 291 (327)
++..||..+.+ +. +|++++-. -|.+ +....-|+.+.+.|+|| |.|++.|+..+
T Consensus 146 ~~~~gd~f~~~---P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 146 EFVPGDFFDPL---PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEEES-TTTCC---SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ccccccHHhhh---cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 89889876544 34 99999853 3444 44566799999999999 99999998863
No 181
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.66 E-value=0.00065 Score=65.97 Aligned_cols=77 Identities=4% Similarity=-0.174 Sum_probs=53.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCcccce
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~v~~V 234 (327)
..+|||||||+|..+..++.. . ++.+++++|+++...+.|++ |+... ++.++ |
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~---~-~~~~~~atDId~~Al~~A~~-------------------Nv~~Np~l~~~---I 168 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVH---E-YGWRFVGSDIDPQALASAQA-------------------IISANPGLNGA---I 168 (321)
T ss_pred CceEEEecCCccHHHHHHHhh---C-CCCEEEEEeCCHHHHHHHHH-------------------HHHhccCCcCc---E
Confidence 478999999999888777763 2 36899999999999998877 44444 45445 5
Q ss_pred Eeee-cchhhhhhh---cCCcEeEEEEc
Q 041517 235 PFSS-GSALTKLCE---WGVVGDLIEID 258 (327)
Q Consensus 235 ~~~~-gda~~~L~~---l~~~fDLIfID 258 (327)
.+.. .+..+.+.. .++.||+|+..
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeC
Confidence 5542 333333222 24689999875
No 182
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.62 E-value=0.00011 Score=71.25 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=73.5
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.+.||+||||+|-.+++-|++ | -.+|++||.+.-+ +.|++. +...++.+.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA----G-A~~V~aVe~S~ia-~~a~~i-------------------v~~N~~~~i-- 110 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA----G-ARKVYAVEASSIA-DFARKI-------------------VKDNGLEDV-- 110 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh----C-cceEEEEechHHH-HHHHHH-------------------HHhcCccce--
Confidence 457899999999999999999986 4 6899999997644 555542 223344444
Q ss_pred ceEeeecchhhhhhhcC-CcEeEEEEcCC---CCCCcHHHHHHHH-HccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEWG-VVGDLIEIDAG---HDFNSAWADINRA-WRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~-~~fDLIfIDa~---h~~~~v~~dl~~~-~~lL~pGGvIi~dD 287 (327)
|.+.+|...+. .++ ++.|.|..... .-++.++..+-.+ -+.|+|||+|.=+-
T Consensus 111 -i~vi~gkvEdi--~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~ 167 (346)
T KOG1499|consen 111 -ITVIKGKVEDI--ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDR 167 (346)
T ss_pred -EEEeecceEEE--ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcccc
Confidence 78888877774 444 89999988753 2345555544333 45799999986443
No 183
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.59 E-value=0.00011 Score=63.85 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=60.3
Q ss_pred EEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCc
Q 041517 187 LCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNS 265 (327)
Q Consensus 187 ~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~ 265 (327)
+++|++++|.+.|++... ....+...+ +++..+++.+ ++..+++||+|++... |..++
T Consensus 1 ~GvD~S~~ML~~A~~~~~-----------------~~~~~~~~~---i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~~d 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQS-----------------LKARSCYKC---IEWIEGDAID-LPFDDCEFDAVTMGYGLRNVVD 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhh-----------------cccccCCCc---eEEEEechhh-CCCCCCCeeEEEecchhhcCCC
Confidence 479999999998865321 001011112 8888998765 4655679999998643 43466
Q ss_pred HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 266 AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 266 v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
....++++.+.|+|||.+++.|+..
T Consensus 60 ~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 60 RLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 7788999999999999999999875
No 184
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.59 E-value=0.0014 Score=62.64 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=95.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCC-CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGL-DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~-~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
-+|-+||+|-||.|.=-+-..+ ..+. ...|...|.++...+..++ -+...|+.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~---~~~~~~~~i~LrDys~~Nv~~g~~-------------------li~~~gL~~i-- 189 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALE---KHPERPDSILLRDYSPINVEKGRA-------------------LIAERGLEDI-- 189 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHH---hCCCCCceEEEEeCCHHHHHHHHH-------------------HHHHcCCccc--
Confidence 4688999999999987555444 3443 4689999998877665544 2334455544
Q ss_pred ceEeeecchhhh--hhhcCCcEeEEEEcCCCCC---Cc-HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 233 PVPFSSGSALTK--LCEWGVVGDLIEIDAGHDF---NS-AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 233 ~V~~~~gda~~~--L~~l~~~fDLIfIDa~h~~---~~-v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
++|..+|+.+. +..+....+++++-|-++. +. +...+..+...+.|||++|...--|.|.-+-+.+++.
T Consensus 190 -~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lt---- 264 (311)
T PF12147_consen 190 -ARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLT---- 264 (311)
T ss_pred -eEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHh----
Confidence 68999988764 5556677899999887654 22 5556888999999999999999888765444444432
Q ss_pred HcCCeEEEccceEEEec
Q 041517 307 INGLKVQIDGQHWVIHS 323 (327)
Q Consensus 307 ~~gl~v~~~gq~w~i~~ 323 (327)
-+..|+.|+..+
T Consensus 265 -----sHr~g~~WvMRr 276 (311)
T PF12147_consen 265 -----SHRDGKAWVMRR 276 (311)
T ss_pred -----cccCCCceEEEe
Confidence 233466666543
No 185
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.54 E-value=0.00027 Score=63.64 Aligned_cols=122 Identities=7% Similarity=0.058 Sum_probs=80.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||.|....+|.+. .+.+.++||+++..... ....| +.
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~-----k~v~g~GvEid~~~v~~-----------------------cv~rG-------v~ 58 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE-----KQVDGYGVEIDPDNVAA-----------------------CVARG-------VS 58 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh-----cCCeEEEEecCHHHHHH-----------------------HHHcC-------CC
Confidence 479999999999988777763 37889999998754321 11223 56
Q ss_pred eeecchhhhhhhc-CCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCCC---------------CC------
Q 041517 236 FSSGSALTKLCEW-GVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYFT---------------AA------ 292 (327)
Q Consensus 236 ~~~gda~~~L~~l-~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~~---------------~~------ 292 (327)
..++|..+.|..+ +.+||.|++--..+ ...+..-|++++|. ..-++|-|-+... +.
T Consensus 59 Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV-gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W 137 (193)
T PF07021_consen 59 VIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRV-GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW 137 (193)
T ss_pred EEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHh-cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 6788888878765 58999999754332 12234556666543 3346777777632 00
Q ss_pred -Cchh----HHHHHHHHHHHcCCeEE
Q 041517 293 -DNRG----VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 293 -~~~G----V~~Av~~f~~~~gl~v~ 313 (327)
+.|. .-+-+++||++.|++|.
T Consensus 138 YdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 138 YDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred cCCCCcccccHHHHHHHHHHCCCEEE
Confidence 1122 33667899999999886
No 186
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.0019 Score=63.50 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
++-..++.-....+|||....-|.=|.+||+.++ +.+..|+++|.++.-.... .+|+..
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~--~~~~iV~A~D~~~~Rl~~l-------------------~~nl~R 204 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELME--NEGAIVVAVDVSPKRLKRL-------------------RENLKR 204 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcC--CCCceEEEEcCCHHHHHHH-------------------HHHHHH
Confidence 3444455444568999999999999999999743 2245669999986533322 336666
Q ss_pred hccCCcccceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRP 279 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~p 279 (327)
.|..+ +.....|+......+ ..+||.|.+|+--+... -.+-|+.++++|+|
T Consensus 205 lG~~n----v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~ 280 (355)
T COG0144 205 LGVRN----VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP 280 (355)
T ss_pred cCCCc----eEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66543 344444443321122 23699999996533211 23447889999999
Q ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEEE
Q 041517 280 GGVIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQI 314 (327)
Q Consensus 280 GGvIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~~ 314 (327)
||+|+...+-..+. .=.+-|..|.+++ ++++..
T Consensus 281 GG~LVYSTCS~~~e--ENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 281 GGVLVYSTCSLTPE--ENEEVVERFLERHPDFELEP 314 (355)
T ss_pred CCEEEEEccCCchh--cCHHHHHHHHHhCCCceeec
Confidence 99999999987431 1123344555443 444443
No 187
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.51 E-value=0.00029 Score=67.59 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=56.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.+.+||++||.|.-|..+++. +++.++|++||.++.+.+.+++.. .. .++ +
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~---~~~~g~VigiD~D~~al~~ak~~L-------------------~~---~~r---i 70 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILER---LGPKGRLIAIDRDPDAIAAAKDRL-------------------KP---FGR---F 70 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHh---CCCCCEEEEEcCCHHHHHHHHHhh-------------------cc---CCc---E
Confidence 3469999999999999999985 566899999999999998776521 11 122 6
Q ss_pred EeeecchhhhhhhcC---CcEeEEEEcCC
Q 041517 235 PFSSGSALTKLCEWG---VVGDLIEIDAG 260 (327)
Q Consensus 235 ~~~~gda~~~L~~l~---~~fDLIfIDa~ 260 (327)
.+..++..+....+. .++|.|++|-+
T Consensus 71 ~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 71 TLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred EEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 666776665433332 26888888844
No 188
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.50 E-value=0.00036 Score=62.56 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=70.5
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh-hccCCcccceEe
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY-QNAIDSVLPVPF 236 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~-~g~~~~v~~V~~ 236 (327)
+++|||||.|.=++.+|-+ .|+.+++.+|....-. .|++++.. -++. + +..
T Consensus 51 ~~lDiGSGaGfPGipLaI~----~p~~~~~LvEs~~KK~--------------------~FL~~~~~~L~L~-n---v~v 102 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIA----RPDLQVTLVESVGKKV--------------------AFLKEVVRELGLS-N---VEV 102 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-----TTSEEEEEESSHHHH--------------------HHHHHHHHHHT-S-S---EEE
T ss_pred eEEecCCCCCChhHHHHHh----CCCCcEEEEeCCchHH--------------------HHHHHHHHHhCCC-C---EEE
Confidence 7999999999999999985 4689999999954322 24444432 2443 2 778
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+.+.+ +.....||+|..-|-. +....++.+.+++++||.+++-
T Consensus 103 ~~~R~E~--~~~~~~fd~v~aRAv~---~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 103 INGRAEE--PEYRESFDVVTARAVA---PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp EES-HHH--TTTTT-EEEEEEESSS---SHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEeeecc--cccCCCccEEEeehhc---CHHHHHHHHHHhcCCCCEEEEE
Confidence 8888777 4456899999999875 3446889999999999988874
No 189
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.46 E-value=0.00065 Score=63.30 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+..+|||||||+|..+..|++. ..+++++|.++.+.+.+++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~------~~~v~~iE~d~~~~~~l~~ 69 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKR------AKKVTAIEIDPRLAEILRK 69 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHh------CCcEEEEECCHHHHHHHHH
Confidence 4679999999999999999985 3469999999988876654
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.44 E-value=0.00078 Score=69.24 Aligned_cols=103 Identities=15% Similarity=0.029 Sum_probs=68.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
...+||||||.|.+++.+|.. .|+..+++||........+-+ .+...++. + +.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~----~p~~~~iGiE~~~~~~~~~~~-------------------~~~~~~l~-N---~~ 400 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKM----NPDALFIGVEVYLNGVANVLK-------------------LAGEQNIT-N---FL 400 (506)
T ss_pred CceEEEECCCchHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHH-------------------HHHHcCCC-e---EE
Confidence 467999999999999999984 668999999998754432211 22222321 1 66
Q ss_pred eeecchhhhhhhc-CCcEeEEEEcCC-------CCCCc--HHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEW-GVVGDLIEIDAG-------HDFNS--AWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l-~~~fDLIfIDa~-------h~~~~--v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..+++......+ +.++|-|||--. |...- -...++.+.++|+|||.|-+
T Consensus 401 ~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 401 LFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 6666654433333 467999998522 21100 12568999999999997765
No 191
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.40 E-value=0.00071 Score=61.78 Aligned_cols=130 Identities=17% Similarity=0.143 Sum_probs=73.7
Q ss_pred hhccCCch--HHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccch
Q 041517 135 RRIKGWGS--YGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNV 212 (327)
Q Consensus 135 ~~~~gw~~--~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~ 212 (327)
.+...|+. ...+++.|.+.-+...|.|+|||.+..| ++ ++...+|+++|.-..-..+..-
T Consensus 50 ~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la----~~---~~~~~~V~SfDLva~n~~Vtac----------- 111 (219)
T PF05148_consen 50 QQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLA----KA---VPNKHKVHSFDLVAPNPRVTAC----------- 111 (219)
T ss_dssp HHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHH----HH-----S---EEEEESS-SSTTEEES-----------
T ss_pred HHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHH----Hh---cccCceEEEeeccCCCCCEEEe-----------
Confidence 35667833 3456666655444569999999988776 32 3346789999995532211100
Q ss_pred HHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC
Q 041517 213 LLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA 292 (327)
Q Consensus 213 ~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~ 292 (327)
++.. + |-.++..|+++.--..-.......+++++|+|||||.+.+-++..
T Consensus 112 --------dia~---------v-----------PL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S-- 161 (219)
T PF05148_consen 112 --------DIAN---------V-----------PLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS-- 161 (219)
T ss_dssp ---------TTS---------------------S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG--
T ss_pred --------cCcc---------C-----------cCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc--
Confidence 1100 2 222467888876655544556689999999999999999999986
Q ss_pred CchhHHHHHHHHHHHcCCeEE
Q 041517 293 DNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 293 ~~~GV~~Av~~f~~~~gl~v~ 313 (327)
.+..+.++++.+ ...|+++.
T Consensus 162 Rf~~~~~F~~~~-~~~GF~~~ 181 (219)
T PF05148_consen 162 RFENVKQFIKAL-KKLGFKLK 181 (219)
T ss_dssp G-S-HHHHHHHH-HCTTEEEE
T ss_pred cCcCHHHHHHHH-HHCCCeEE
Confidence 466787776665 45677654
No 192
>PRK04148 hypothetical protein; Provisional
Probab=97.36 E-value=0.00038 Score=59.34 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=32.3
Q ss_pred CCCEEEEEcCcchH-HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGA-SALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~-Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+..+|||||||.|. .+..|++. +.+|+++|.++...+.+++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKK 57 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHH
Confidence 45789999999997 66677763 7899999999986654443
No 193
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.34 E-value=0.00053 Score=66.51 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=76.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.+.|||+|||+|..+...|.+ | ..+||+||.+ +|.+.|++.. ...++.++ |
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA----G-A~~vYAvEAS-~MAqyA~~Lv-------------------~~N~~~~r---I 228 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA----G-AKKVYAVEAS-EMAQYARKLV-------------------ASNNLADR---I 228 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh----C-cceEEEEehh-HHHHHHHHHH-------------------hcCCccce---E
Confidence 4688999999999999998885 3 6789999986 4666776532 11234556 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC---CCCCcHHHHHHHHHccCCCCeEEE--EEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG---HDFNSAWADINRAWRILRPGGVIF--GHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~---h~~~~v~~dl~~~~~lL~pGGvIi--~dD~~~ 290 (327)
..+.|..++. +++++.|+|+..-. .-++.+++.+-.+.+.|+|.|.+. +-|+..
T Consensus 229 tVI~GKiEdi--eLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHl 287 (517)
T KOG1500|consen 229 TVIPGKIEDI--ELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHL 287 (517)
T ss_pred EEccCccccc--cCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceee
Confidence 7777776663 56789999987632 234567777778889999999876 444443
No 194
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.29 E-value=0.00049 Score=64.98 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=57.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..|..+++. ..+|+++|.++.+.+.+++. +.. ++ +
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~------~~~v~avE~d~~~~~~~~~~-------------------~~~----~~---v 89 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLER------AAKVTAVEIDRDLAPILAET-------------------FAE----DN---L 89 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHh------CCcEEEEECCHHHHHHHHHh-------------------hcc----Cc---e
Confidence 4579999999999999999985 34899999999998876542 111 12 7
Q ss_pred EeeecchhhhhhhcCCc-EeEEEEcCCCCCCcHHHHHHHHHcc
Q 041517 235 PFSSGSALTKLCEWGVV-GDLIEIDAGHDFNSAWADINRAWRI 276 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~-fDLIfIDa~h~~~~v~~dl~~~~~l 276 (327)
.+..+|+.+. . ++.. +|.|+ ++.+|+.....+..++..
T Consensus 90 ~~i~~D~~~~-~-~~~~~~~~vv--~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 90 TIIEGDALKV-D-LSELQPLKVV--ANLPYNITTPLLFHLLEE 128 (272)
T ss_pred EEEEChhhcC-C-HHHcCcceEE--EeCCccchHHHHHHHHhc
Confidence 7778877653 1 1111 34444 455666555556666543
No 195
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.29 E-value=0.00083 Score=63.84 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=64.4
Q ss_pred CCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
|++|+=|||| .-.++++|++. .+.+..+++||.++...+.+++.. + ...++..+ +
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~---~~~~~~v~~iD~d~~A~~~a~~lv----------------~--~~~~L~~~---m 176 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQ---HGPGARVHNIDIDPEANELARRLV----------------A--SDLGLSKR---M 176 (276)
T ss_dssp --EEEEE---SS-HHHHHHH-----HTT--EEEEEESSHHHHHHHHHHH----------------H-----HH-SS---E
T ss_pred cceEEEEcCCCcchHHHHHHHH---hCCCCeEEEEeCCHHHHHHHHHHH----------------h--hcccccCC---e
Confidence 5799999998 77889999973 456889999999998888776521 1 01234444 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC--CCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD--FNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~--~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.|..+|..+.-..+ ..||+||+-+--. .++-.+-++.+.+.++||++|++-
T Consensus 177 ~f~~~d~~~~~~dl-~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 177 SFITADVLDVTYDL-KEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEES-GGGG-GG-----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEecchhcccccc-ccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 89888876642222 5799999986542 235567899999999999999997
No 196
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00096 Score=61.18 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=80.0
Q ss_pred ccCCchHHHHHHHHHhh--cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH
Q 041517 137 IKGWGSYGAVFGNLIDK--VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 137 ~~gw~~~g~lL~~L~~~--~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
+..| ++ ++|..+++. .+.++||+||-|.|-..-.+-++ + .-+-+-||..++....-+... .
T Consensus 83 Mm~W-Et-piMha~A~ai~tkggrvLnVGFGMgIidT~iQe~----~-p~~H~IiE~hp~V~krmr~~g---w------- 145 (271)
T KOG1709|consen 83 MMRW-ET-PIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEA----P-PDEHWIIEAHPDVLKRMRDWG---W------- 145 (271)
T ss_pred hhhh-hh-HHHHHHHHHHhhCCceEEEeccchHHHHHHHhhc----C-CcceEEEecCHHHHHHHHhcc---c-------
Confidence 3456 22 344444432 57899999999999888777763 3 456677888776543322211 0
Q ss_pred HHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 215 YFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 215 ~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...++|+++.-.-.|.+..|+ +..||=|+.|.- -.|++.++..+.+.++|+|+|++-+-+..-
T Consensus 146 -----------~ek~nViil~g~WeDvl~~L~--d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 146 -----------REKENVIILEGRWEDVLNTLP--DKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred -----------ccccceEEEecchHhhhcccc--ccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 012333333333334444433 367999999986 446778888899999999999998776653
No 197
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.27 E-value=0.00078 Score=62.36 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPG 197 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~ 197 (327)
+.++|||+|||+|..+.++++. + ..+|++||+.+++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~----g-a~~v~avD~~~~~l~ 112 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK----G-AKEVYGVDVGYNQLA 112 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc----C-CCEEEEEeCCHHHHH
Confidence 4568999999999999999983 3 478999999996654
No 198
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.26 E-value=0.00055 Score=69.42 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=82.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh-hccCCcccce
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY-QNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~-~g~~~~v~~V 234 (327)
-+.+||||||.|.++..|.+. +-...++-...++.... + +.. .| |
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r------~V~t~s~a~~d~~~~qv-q--------------------faleRG-------v 163 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER------NVTTMSFAPNDEHEAQV-Q--------------------FALERG-------V 163 (506)
T ss_pred eEEEEeccceeehhHHHHhhC------CceEEEcccccCCchhh-h--------------------hhhhcC-------c
Confidence 367999999999999998873 55555555554443211 0 110 12 1
Q ss_pred Eeeec-chhhhhhhcCCcEeEEEEc----CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC----CCchhHHHHHHHHH
Q 041517 235 PFSSG-SALTKLCEWGVVGDLIEID----AGHDFNSAWADINRAWRILRPGGVIFGHDYFTA----ADNRGVRRAVNLFA 305 (327)
Q Consensus 235 ~~~~g-da~~~L~~l~~~fDLIfID----a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~----~~~~GV~~Av~~f~ 305 (327)
....+ -+...||.....||+||.- ..+.+.. -.|-++-|+|||||+.+...---. .+......++.+++
T Consensus 164 pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~ 241 (506)
T PF03141_consen 164 PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLA 241 (506)
T ss_pred chhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHH
Confidence 11111 1234567767899999853 2233333 467888999999999988655322 23456788888888
Q ss_pred HHcCCeEE-EccceEEEecccC
Q 041517 306 KINGLKVQ-IDGQHWVIHSAVN 326 (327)
Q Consensus 306 ~~~gl~v~-~~gq~w~i~~~~~ 326 (327)
+..-++.. ..++-=+-.+|.|
T Consensus 242 ~~lCW~~va~~~~~aIwqKp~~ 263 (506)
T PF03141_consen 242 KSLCWKKVAEKGDTAIWQKPTN 263 (506)
T ss_pred HHHHHHHheeeCCEEEEeccCC
Confidence 88877633 4455444455554
No 199
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.24 E-value=0.0017 Score=59.09 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=82.4
Q ss_pred EEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeee
Q 041517 159 IIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSS 238 (327)
Q Consensus 159 VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~ 238 (327)
|+||||--||..++|++. +.-.+++++|+.++-.+.|++ |+...|+.++ |.++.
T Consensus 1 vaDIGtDHgyLpi~L~~~----~~~~~~ia~DI~~gpL~~A~~-------------------~i~~~~l~~~---i~~rl 54 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN----GKAPKAIAVDINPGPLEKAKE-------------------NIAKYGLEDR---IEVRL 54 (205)
T ss_dssp EEEET-STTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHH-------------------HHHHTT-TTT---EEEEE
T ss_pred CceeccchhHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHcCCccc---EEEEE
Confidence 689999999999999984 556789999999987776665 6777777777 89999
Q ss_pred cchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 239 GSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 239 gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+|+++.|+. ++..|.|.|-|.= ..-..+-|+.....++....+|+.-... ...++.+..++|+.+.
T Consensus 55 gdGL~~l~~-~e~~d~ivIAGMG-G~lI~~ILe~~~~~~~~~~~lILqP~~~-------~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 55 GDGLEVLKP-GEDVDTIVIAGMG-GELIIEILEAGPEKLSSAKRLILQPNTH-------AYELRRWLYENGFEII 120 (205)
T ss_dssp -SGGGG--G-GG---EEEEEEE--HHHHHHHHHHTGGGGTT--EEEEEESS--------HHHHHHHHHHTTEEEE
T ss_pred CCcccccCC-CCCCCEEEEecCC-HHHHHHHHHhhHHHhccCCeEEEeCCCC-------hHHHHHHHHHCCCEEE
Confidence 999887754 2347999997653 2345566777777777666777744432 4667788888998865
No 200
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.21 E-value=0.00051 Score=62.15 Aligned_cols=132 Identities=20% Similarity=0.086 Sum_probs=68.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhcc-----CCCCcEEEEEeCCCCChhhhhhhc--ccCccccchHHHHHHHHHHhh--h
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQ-----LGLDSQILCIDDFRGWPGFRDKFK--EIPMVNGNVLLYFQFLQNVIY--Q 225 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~-----l~~~~~V~~ID~~~~~~~~A~~~~--~~~~~~g~~~~~~~Fl~nv~~--~ 225 (327)
++-+|.-.||.+|.=+..||..+.. .+.+-+|++.|+++...+.|++-. ...+..-......++...... .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4679999999999766665555544 122569999999999998887622 111111111222222200000 0
Q ss_pred ccCCcc-cceEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 226 NAIDSV-LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 226 g~~~~v-~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
...+.+ ..|.|...+-.+ .....+.||+||.---.-| +.....++.+...|+|||++++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 000001 017777776555 1223478999998643222 334567899999999999999843
No 201
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.21 E-value=0.0036 Score=59.61 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=90.4
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++.......|||++++-|.=|..+|+. ++..++|+++|.++.-.... .+|+...
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~---~~~~g~i~A~D~~~~Rl~~l-------------------~~~~~r~ 133 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAEL---MGNKGEIVANDISPKRLKRL-------------------KENLKRL 133 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHH---TTTTSEEEEEESSHHHHHHH-------------------HHHHHHT
T ss_pred cccccccccccccccccccCCCCceeeeeec---ccchhHHHHhccCHHHHHHH-------------------HHHHHhc
Confidence 3344445555679999999999999999997 45589999999976433221 2355555
Q ss_pred ccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCC-------c----------------HHHHHHHHHccC----
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFN-------S----------------AWADINRAWRIL---- 277 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~-------~----------------v~~dl~~~~~lL---- 277 (327)
|... +.....|+....+.. ...||.|.+|+--+.. . -.+-|+.+.+.+
T Consensus 134 g~~~----v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~ 209 (283)
T PF01189_consen 134 GVFN----VIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDF 209 (283)
T ss_dssp T-SS----EEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHB
T ss_pred CCce----EEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccc
Confidence 5432 555557776654433 3469999999653321 1 133478899999
Q ss_pred CCCeEEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEE
Q 041517 278 RPGGVIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQ 313 (327)
Q Consensus 278 ~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~ 313 (327)
+|||+||...+-..+ ..=.+.|+.|.+.+ .+++.
T Consensus 210 k~gG~lvYsTCS~~~--eENE~vV~~fl~~~~~~~l~ 244 (283)
T PF01189_consen 210 KPGGRLVYSTCSLSP--EENEEVVEKFLKRHPDFELV 244 (283)
T ss_dssp EEEEEEEEEESHHHG--GGTHHHHHHHHHHSTSEEEE
T ss_pred cCCCeEEEEeccHHH--HHHHHHHHHHHHhCCCcEEE
Confidence 999999998886522 11123455555544 44443
No 202
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.21 E-value=0.0012 Score=56.64 Aligned_cols=103 Identities=15% Similarity=0.057 Sum_probs=63.4
Q ss_pred EEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCC-cEeEEEEc-----
Q 041517 185 QILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGV-VGDLIEID----- 258 (327)
Q Consensus 185 ~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~-~fDLIfID----- 258 (327)
+|+++|+-++..+..++ .+...+..++ |.+....=......... ++|++...
T Consensus 1 kVyaFDIQ~~Ai~~T~~-------------------rL~~~~~~~~---v~li~~sHe~l~~~i~~~~v~~~iFNLGYLP 58 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRE-------------------RLEEAGLEDR---VTLILDSHENLDEYIPEGPVDAAIFNLGYLP 58 (140)
T ss_dssp EEEEEES-HHHHHHHHH-------------------HHHHTT-GSG---EEEEES-GGGGGGT--S--EEEEEEEESB-C
T ss_pred CEEEEECHHHHHHHHHH-------------------HHHhcCCCCc---EEEEECCHHHHHhhCccCCcCEEEEECCcCC
Confidence 68999997776665544 3444444444 77766543332222344 89988865
Q ss_pred -CCCCC----CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 259 -AGHDF----NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 259 -a~h~~----~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
+||.- +.....++.++++|+|||+|++.=|.-.+.-..-.++|.+|+....
T Consensus 59 ggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 59 GGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp TS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 55543 4478889999999999999999877643322226789999998743
No 203
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.19 E-value=0.0026 Score=57.98 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=66.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+....+|||||.|...+..|... .-.+.+|||+.+...+.|+... ..|.+.+...|. +..++
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~----~~~~~~GIEi~~~~~~~a~~~~------------~~~~~~~~~~g~--~~~~v 103 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQT----GCKKSVGIEILPELHDLAEELL------------EELKKRMKHYGK--RPGKV 103 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH------SEEEEEE-SHHHHHHHHHHH------------HHHHHHHHHCTB-----EE
T ss_pred CCCEEEECCCCCCHHHHHHHHHc----CCcEEEEEEechHHHHHHHHHH------------HHHHHHHHHhhc--ccccc
Confidence 35789999999999988877642 2456999999888776665432 122233333232 22347
Q ss_pred Eeeecchhhh--hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTK--LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~--L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+..||..+. ...+-...|+||+..--=.++....+...+..|++|..||.-.
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 8888876542 1111134799999865423566778888999999999988643
No 204
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.17 E-value=0.00081 Score=62.97 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=35.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+..+|||||||+|..|..+++. ..+|++||.++.+.+.+++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~ 69 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRD 69 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHH
Confidence 4579999999999999999984 4689999999998887665
No 205
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.14 E-value=0.0012 Score=58.07 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=66.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+||+.|..+-.+++. ..+.++|++||+.+...- +... ...| ++ ..
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~---~~~~~~v~avDl~~~~~~--~~~~---~i~~----------d~-----------~~ 74 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQR---GGPAGRVVAVDLGPMDPL--QNVS---FIQG----------DI-----------TN 74 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTS---TTTEEEEEEEESSSTGS---TTEE---BTTG----------GG-----------EE
T ss_pred ccEEEEcCCcccceeeeeeec---ccccceEEEEeccccccc--ccee---eeec----------cc-----------ch
Confidence 479999999999999999884 345799999999876211 0000 0000 00 00
Q ss_pred eeec-chhhhhhhcCCcEeEEEEcCCCCC------------CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHH
Q 041517 236 FSSG-SALTKLCEWGVVGDLIEIDAGHDF------------NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN 302 (327)
Q Consensus 236 ~~~g-da~~~L~~l~~~fDLIfIDa~h~~------------~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~ 302 (327)
...- ...+.+....+++|+|..|+.... .-....+..+...|+|||.+|+--+.. +....+...+.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~-~~~~~~~~~l~ 153 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG-PEIEELIYLLK 153 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS-TTSHHHHHHHH
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC-ccHHHHHHHHH
Confidence 0000 111112212368999999983221 113445677788999999777755553 23345555555
Q ss_pred HHHH
Q 041517 303 LFAK 306 (327)
Q Consensus 303 ~f~~ 306 (327)
...+
T Consensus 154 ~~F~ 157 (181)
T PF01728_consen 154 RCFS 157 (181)
T ss_dssp HHHH
T ss_pred hCCe
Confidence 5444
No 206
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.10 E-value=0.0066 Score=64.20 Aligned_cols=147 Identities=17% Similarity=0.038 Sum_probs=88.0
Q ss_pred CCEEEEEcCcchHHHHHHHHHhcc---CCC-----CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh--h
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQ---LGL-----DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY--Q 225 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~---l~~-----~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~--~ 225 (327)
.-+|+|+|-|+|++.+...+..+. ..+ .-+++++|.++-..+...+....-.. ...+.+++.+.... .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPE--LAPLAEQLQAQWPLLLP 135 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcc--cHHHHHHHHHhCCccCC
Confidence 468999999999999888876521 122 34889999877433322221100000 01122223222110 1
Q ss_pred cc-----CCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC--CCcHH--HHHHHHHccCCCCeEEEEEcCCCCCCchh
Q 041517 226 NA-----IDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD--FNSAW--ADINRAWRILRPGGVIFGHDYFTAADNRG 296 (327)
Q Consensus 226 g~-----~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~--~~~v~--~dl~~~~~lL~pGGvIi~dD~~~~~~~~G 296 (327)
|+ .+.-+.+.+..||+.+.++.+...+|.+|.|+-.+ ++.+| +.+..+.++++|||+++--.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 11 11112366778999999998877899999998644 34443 45899999999999999632
Q ss_pred HHHHHHHHHHHcCCeEE
Q 041517 297 VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 297 V~~Av~~f~~~~gl~v~ 313 (327)
+..+|+.-+...|++|.
T Consensus 207 ~a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 207 SAGFVRRGLQEAGFTVR 223 (662)
T ss_pred hHHHHHHHHHHcCCeee
Confidence 23444544555566654
No 207
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.09 E-value=0.0021 Score=62.10 Aligned_cols=126 Identities=18% Similarity=0.255 Sum_probs=78.8
Q ss_pred hccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHH
Q 041517 136 RIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLY 215 (327)
Q Consensus 136 ~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~ 215 (327)
...+| ....|+....+ +...++++|||.|.=.+-+-.+ + =+.++|+|+.+...+.|++...
T Consensus 101 nfNNw-IKs~LI~~y~~--~~~~~~~LgCGKGGDLlKw~kA----g-I~~~igiDIAevSI~qa~~RYr----------- 161 (389)
T KOG1975|consen 101 NFNNW-IKSVLINLYTK--RGDDVLDLGCGKGGDLLKWDKA----G-IGEYIGIDIAEVSINQARKRYR----------- 161 (389)
T ss_pred hhhHH-HHHHHHHHHhc--cccccceeccCCcccHhHhhhh----c-ccceEeeehhhccHHHHHHHHH-----------
Confidence 44566 33334443322 3578999999999998888775 2 4689999999998887765211
Q ss_pred HHHHHHHhhhccCCcccceEeeecchhh-hhhh-c---CCcEeEEEEc-CCC----CCCcHHHHHHHHHccCCCCeEEEE
Q 041517 216 FQFLQNVIYQNAIDSVLPVPFSSGSALT-KLCE-W---GVVGDLIEID-AGH----DFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 216 ~~Fl~nv~~~g~~~~v~~V~~~~gda~~-~L~~-l---~~~fDLIfID-a~h----~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
. +.|-.. ..+-++.|..+|... .|-. + +.+||+|-.- +.| +.+.+...+..+.+.|+|||+.|+
T Consensus 162 -d-m~~r~~----~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 162 -D-MKNRFK----KFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred -H-HHhhhh----cccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 0 111111 112236777766432 2222 1 3449988654 222 334566678999999999999998
Q ss_pred E
Q 041517 286 H 286 (327)
Q Consensus 286 d 286 (327)
.
T Consensus 236 T 236 (389)
T KOG1975|consen 236 T 236 (389)
T ss_pred e
Confidence 4
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.04 E-value=0.0041 Score=57.09 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=79.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCcccce
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~v~~V 234 (327)
+.+++|||+|.|.=++.+|-+ .++.+|+.+|....-. .|++.+... ++. . +
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~----~p~~~vtLles~~Kk~--------------------~FL~~~~~eL~L~-n---v 119 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA----FPDLKVTLLESLGKKI--------------------AFLREVKKELGLE-N---V 119 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh----ccCCcEEEEccCchHH--------------------HHHHHHHHHhCCC-C---e
Confidence 689999999999999999963 4577799999965432 355555432 332 1 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
.+..+.+++.-.+... ||+|...|--+- -.-.+++.+++++||.+++-=.. ...|...-.+..+...+..+
T Consensus 120 ~i~~~RaE~~~~~~~~-~D~vtsRAva~L---~~l~e~~~pllk~~g~~~~~k~~---~~~~e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 120 EIVHGRAEEFGQEKKQ-YDVVTSRAVASL---NVLLELCLPLLKVGGGFLAYKGL---AGKDELPEAEKAILPLGGQV 190 (215)
T ss_pred EEehhhHhhccccccc-CcEEEeehccch---HHHHHHHHHhcccCCcchhhhHH---hhhhhHHHHHHHHHhhcCcE
Confidence 7888877764222112 999999886533 34678999999999887642222 23444444555555554443
No 209
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.04 E-value=0.004 Score=58.65 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=81.9
Q ss_pred hccCCch--HHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchH
Q 041517 136 RIKGWGS--YGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVL 213 (327)
Q Consensus 136 ~~~gw~~--~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~ 213 (327)
+...|+. ...++..|-+.-+...|.|+|||.+..|. +...+|+++|+-.--.
T Consensus 159 QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---------~~~~kV~SfDL~a~~~----------------- 212 (325)
T KOG3045|consen 159 QVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---------SERHKVHSFDLVAVNE----------------- 212 (325)
T ss_pred HHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---------ccccceeeeeeecCCC-----------------
Confidence 5567743 34566666555456789999999887654 2368899999843211
Q ss_pred HHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 214 LYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 214 ~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
+|++..+ .+ +|-.+++.|+++.--..-.......+.++.++|++||.+-+..+.. .
T Consensus 213 ----------------~V~~cDm-----~~-vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~S--R 268 (325)
T KOG3045|consen 213 ----------------RVIACDM-----RN-VPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKS--R 268 (325)
T ss_pred ----------------ceeeccc-----cC-CcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhh--h
Confidence 1100111 11 1333567787776544434555678999999999999999999975 5
Q ss_pred chhHHHHHHHHHHHcCCeEE
Q 041517 294 NRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 294 ~~GV~~Av~~f~~~~gl~v~ 313 (327)
++.|+.+++.+ ...|+.+.
T Consensus 269 f~dv~~f~r~l-~~lGF~~~ 287 (325)
T KOG3045|consen 269 FSDVKGFVRAL-TKLGFDVK 287 (325)
T ss_pred cccHHHHHHHH-HHcCCeee
Confidence 67788877766 44566543
No 210
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.02 E-value=0.0013 Score=64.23 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=74.6
Q ss_pred hccCCchHHHHHHHHHhhc----CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccc
Q 041517 136 RIKGWGSYGAVFGNLIDKV----RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGN 211 (327)
Q Consensus 136 ~~~gw~~~g~lL~~L~~~~----~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~ 211 (327)
...+| -...|+...+... +..+|||+|||.|.=..-|..+ .-..++|+|++...++.|++...
T Consensus 40 ~fNNw-vKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~-----~i~~~vg~Dis~~si~ea~~Ry~------- 106 (331)
T PF03291_consen 40 NFNNW-VKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA-----KIKHYVGIDISEESIEEARERYK------- 106 (331)
T ss_dssp HHHHH-HHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT-----T-SEEEEEES-HHHHHHHHHHHH-------
T ss_pred HHhHH-HHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHH-------
Confidence 33456 3345666666533 4689999999988766666653 26899999999987776654221
Q ss_pred hHHHHHHHHHHhhhccCCcccceEeeecchhh-hhhh-c---CCcEeEEEEcC-CC----CCCcHHHHHHHHHccCCCCe
Q 041517 212 VLLYFQFLQNVIYQNAIDSVLPVPFSSGSALT-KLCE-W---GVVGDLIEIDA-GH----DFNSAWADINRAWRILRPGG 281 (327)
Q Consensus 212 ~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~-~L~~-l---~~~fDLIfIDa-~h----~~~~v~~dl~~~~~lL~pGG 281 (327)
++.++....... ......+..+|... .|.. + ..+||+|-+=- -| +.+.+..-|+.+...|+|||
T Consensus 107 -----~~~~~~~~~~~~-~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 107 -----QLKKRNNSKQYR-FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp -----HHHTSTT-HTSE-ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -----Hhcccccccccc-ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence 001000000000 00124555555432 1211 1 25999998753 33 22335567899999999999
Q ss_pred EEEEEcC
Q 041517 282 VIFGHDY 288 (327)
Q Consensus 282 vIi~dD~ 288 (327)
++|+.-.
T Consensus 181 ~FIgT~~ 187 (331)
T PF03291_consen 181 YFIGTTP 187 (331)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9998544
No 211
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.01 E-value=0.002 Score=54.81 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=45.3
Q ss_pred HHHHHHHhh----cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDK----VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~----~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+++..+++. .+...|+|+|||.|+.+..++..+....++.+|++||.++...+.+.+
T Consensus 11 ~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 11 ELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred HHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 455555544 567899999999999999999966555578999999999988766554
No 212
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.94 E-value=0.0089 Score=53.05 Aligned_cols=123 Identities=15% Similarity=-0.016 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCC-----CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLG-----LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~-----~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
+..|-.++...+...++|--||+|...+..|....... ...+++++|+++.+.+.+++
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~----------------- 79 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE----------------- 79 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH-----------------
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH-----------------
Confidence 34455555554567999999999999988777543222 12249999999998887766
Q ss_pred HHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC--Cc-------HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF--NS-------AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~~-------v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
|+..++..+. |.+...|+.+. +...+.+|.|+.|--... .. ...-++++.+.+++..++++....
T Consensus 80 --N~~~ag~~~~---i~~~~~D~~~l-~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~ 153 (179)
T PF01170_consen 80 --NLKAAGVEDY---IDFIQWDAREL-PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR 153 (179)
T ss_dssp --HHHHTT-CGG---EEEEE--GGGG-GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC
T ss_pred --HHHhcccCCc---eEEEecchhhc-ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 6666666555 88888887763 444579999999943211 11 123357788889997777776543
No 213
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.93 E-value=0.007 Score=53.58 Aligned_cols=105 Identities=15% Similarity=0.063 Sum_probs=74.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
....|||+|-|+|..|-.+.+. --++..+++||.++++...-.+... + +
T Consensus 48 sglpVlElGPGTGV~TkaIL~~---gv~~~~L~~iE~~~dF~~~L~~~~p---------------------~-------~ 96 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSR---GVRPESLTAIEYSPDFVCHLNQLYP---------------------G-------V 96 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhc---CCCccceEEEEeCHHHHHHHHHhCC---------------------C-------c
Confidence 4568999999999999998874 3348899999998876653322110 1 4
Q ss_pred Eeeecchhhh---hhh-cCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTK---LCE-WGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~---L~~-l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..||+.+. +.+ .+..||.|+.---... ....+.++.++.+|+.||.++--.|..
T Consensus 97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 4556665542 222 3578999987643322 334567899999999999999988874
No 214
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.87 E-value=0.011 Score=57.44 Aligned_cols=121 Identities=12% Similarity=-0.017 Sum_probs=72.1
Q ss_pred HHhhcCC-CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 150 LIDKVRP-RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 150 L~~~~~p-~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
+++..++ ..++|+|||.|.=+..+.+++.......+.++||++..+.+.+.+ ++......
T Consensus 70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~-------------------~L~~~~~p 130 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLA-------------------ELPLGNFS 130 (319)
T ss_pred HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHH-------------------hhhhccCC
Confidence 3444444 489999999999999988887655557889999999988765533 22211110
Q ss_pred CcccceEeeecchhhh---hhh--cCCcEeEEE-Ec---CCCCCCcHHHHHHHHHc-cCCCCe-EEEEEcCCCC
Q 041517 229 DSVLPVPFSSGSALTK---LCE--WGVVGDLIE-ID---AGHDFNSAWADINRAWR-ILRPGG-VIFGHDYFTA 291 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~---L~~--l~~~fDLIf-ID---a~h~~~~v~~dl~~~~~-lL~pGG-vIi~dD~~~~ 291 (327)
. +.+.-..|+-.+. ++. ......+++ .- |+.+......-|+.+.+ .|+||+ +||.-|...+
T Consensus 131 -~-l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 131 -H-VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred -C-eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 0 1133344543333 222 122234554 44 23333445566778888 899976 5666777653
No 215
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0045 Score=60.44 Aligned_cols=138 Identities=17% Similarity=0.051 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+.+|-+|++..+...|||==||||...+..... +.+++++|++..|..-++. |
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~-------------------N 238 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKI-------------------N 238 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhh-------------------h
Confidence 45678888887777779999999999998887775 8999999999988876655 5
Q ss_pred HhhhccCCcccceEeeec-chhhhhhhcCCcEeEEEEcCC---CC---CCc----HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSG-SALTKLCEWGVVGDLIEIDAG---HD---FNS----AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~g-da~~~L~~l~~~fDLIfIDa~---h~---~~~----v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...+..+ ..+... |+.+ ++--+..+|-|..|-- .. ... ..+.++.+.++|++||++++---
T Consensus 239 l~~y~i~~----~~~~~~~Da~~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-- 311 (347)
T COG1041 239 LEYYGIED----YPVLKVLDATN-LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-- 311 (347)
T ss_pred hhhhCcCc----eeEEEeccccc-CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC--
Confidence 55555322 333344 5544 3422346999999932 11 111 45678999999999998887221
Q ss_pred CCCchhHHHHHHHHHHHcCCeEEEccceE
Q 041517 291 AADNRGVRRAVNLFAKINGLKVQIDGQHW 319 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~~~gl~v~~~gq~w 319 (327)
....+...+.++++...-..|
T Consensus 312 --------~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 312 --------RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred --------CcchhhHhhcCceEEEEEEEe
Confidence 112233355677766544444
No 216
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.83 E-value=0.0056 Score=58.59 Aligned_cols=129 Identities=12% Similarity=-0.024 Sum_probs=75.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccC----CCCcEEEEEeCCCCChhhhhhhcc--cCccccchHHHHHHHHHHh-----
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQL----GLDSQILCIDDFRGWPGFRDKFKE--IPMVNGNVLLYFQFLQNVI----- 223 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l----~~~~~V~~ID~~~~~~~~A~~~~~--~~~~~g~~~~~~~Fl~nv~----- 223 (327)
++-+|.-.||.+|-=+..||..+... ..+-+|++.|+++...+.|++-.. ..+..=......++.....
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999997666666655442 224689999999999998876321 0011001112222221100
Q ss_pred ----hhccCCcccceEeeecchhhh-hhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 224 ----YQNAIDSVLPVPFSSGSALTK-LCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 224 ----~~g~~~~v~~V~~~~gda~~~-L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
...+... |.|...+-.+. .+ ..+.||+||.---.-| +.....++.+...|+|||++++--
T Consensus 195 ~~~v~~~lr~~---V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANY---VDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHcc---CEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0011112 66766654441 11 1368999997533222 334567899999999999988743
No 217
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.80 E-value=0.0029 Score=58.25 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.+..|++.=||.|..++..|.. ...|++||+++.....|++ |++..|..++ |
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~Akh-------------------NaeiYGI~~r---I 145 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARH-------------------NAEVYGVPDR---I 145 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhc-------------------cceeecCCce---e
Confidence 6789999999999999999974 7889999999998888876 6666787777 9
Q ss_pred EeeecchhhhhhhcC---CcEeEEEEcCCCCCCcH-HHHHHHHHccCCCCeEEE
Q 041517 235 PFSSGSALTKLCEWG---VVGDLIEIDAGHDFNSA-WADINRAWRILRPGGVIF 284 (327)
Q Consensus 235 ~~~~gda~~~L~~l~---~~fDLIfIDa~h~~~~v-~~dl~~~~~lL~pGGvIi 284 (327)
.|+.||.+++...+. ..+|+||.-....+++. ..++.-+.+++.|-|.-+
T Consensus 146 tFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~~~~~ 199 (263)
T KOG2730|consen 146 TFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPMGTKI 199 (263)
T ss_pred EEEechHHHHHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcchhHHHH
Confidence 999999999877652 45789998766554442 234555666666664333
No 218
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.01 Score=55.92 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=61.8
Q ss_pred HHHHHHHhhcC---CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKVR---PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~~---p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+++... ..+|||||+|.|..|..|++. ..+|++||+++.+.+.-++..
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~------------------ 72 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERF------------------ 72 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhc------------------
Confidence 45566655443 478999999999999999995 678999999988776443311
Q ss_pred HhhhccCCcccceEeeecchhhh-hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHc
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTK-LCEWGVVGDLIEIDAGHDFNSAWADINRAWR 275 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~-L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~ 275 (327)
. ..++ +.++.||++.. ++.+. .++.|+ |+.+|+-.-.-+..++.
T Consensus 73 -~---~~~n---~~vi~~DaLk~d~~~l~-~~~~vV--aNlPY~Isspii~kll~ 117 (259)
T COG0030 73 -A---PYDN---LTVINGDALKFDFPSLA-QPYKVV--ANLPYNISSPILFKLLE 117 (259)
T ss_pred -c---cccc---eEEEeCchhcCcchhhc-CCCEEE--EcCCCcccHHHHHHHHh
Confidence 1 1122 77888888773 22211 233443 56667654444444444
No 219
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.76 E-value=0.0088 Score=55.17 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=64.1
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+||=+|..+|.+-.+++.. .+++|.||+||.++... ++. + ++.. ...++ |+
T Consensus 74 gskVLYLGAasGTTVSHvSDI---vg~~G~VYaVEfs~r~~---rdL----------------~-~la~--~R~NI--iP 126 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDI---VGPDGVVYAVEFSPRSM---RDL----------------L-NLAK--KRPNI--IP 126 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHH---HTTTSEEEEEESSHHHH---HHH----------------H-HHHH--HSTTE--EE
T ss_pred CCEEEEecccCCCccchhhhc---cCCCCcEEEEEecchhH---HHH----------------H-HHhc--cCCce--ee
Confidence 469999999999999999997 67899999999976321 110 1 2221 11233 33
Q ss_pred eeecchhhh--hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTK--LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~--L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+ .+|+... ...+-+.+|+||.|-.++. .+.-....+...|++||.+++
T Consensus 127 I-l~DAr~P~~Y~~lv~~VDvI~~DVaQp~-Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 127 I-LEDARHPEKYRMLVEMVDVIFQDVAQPD-QARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp E-ES-TTSGGGGTTTS--EEEEEEE-SSTT-HHHHHHHHHHHHEEEEEEEEE
T ss_pred e-eccCCChHHhhcccccccEEEecCCChH-HHHHHHHHHHhhccCCcEEEE
Confidence 3 3444431 1223469999999998754 344566788889999996554
No 220
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.049 Score=48.96 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+.-++|||||+|.-+..++.. +++.....+.|+++...+...+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~---i~~~~~~latDiNp~A~~~Tl~ 86 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASV---IGPQALYLATDINPEALEATLE 86 (209)
T ss_pred CceeEEEecCCcchHHHHHHHh---cCCCceEEEecCCHHHHHHHHH
Confidence 3889999999999999999985 6788999999999987765433
No 221
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.71 E-value=0.0023 Score=58.77 Aligned_cols=141 Identities=15% Similarity=0.117 Sum_probs=82.6
Q ss_pred HHHHHHHHhhc-----CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 144 GAVFGNLIDKV-----RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 144 g~lL~~L~~~~-----~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
..||..|.... +..+.||+|+|-|.-|-.+.. +--.+|-.||..+.+.+.|+++...
T Consensus 39 ~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl-----~~f~~VDlVEp~~~Fl~~a~~~l~~------------- 100 (218)
T PF05891_consen 39 RNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLL-----PVFDEVDLVEPVEKFLEQAKEYLGK------------- 100 (218)
T ss_dssp HHHHHCCCT---------SEEEEET-TTTHHHHHTCC-----CC-SEEEEEES-HHHHHHHHHHTCC-------------
T ss_pred HHHHHHHHhhcccCCCCcceEEecccccchhHHHHHH-----HhcCEeEEeccCHHHHHHHHHHhcc-------------
Confidence 35777765542 357899999999999987653 3357899999988888877764320
Q ss_pred HHHHhhhccCCcccceEeeecchhhhh-hhcCCcEeEEEEcCCC---CCCcHHHHHHHHHccCCCCeEEEEEcCCCC---
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKL-CEWGVVGDLIEIDAGH---DFNSAWADINRAWRILRPGGVIFGHDYFTA--- 291 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L-~~l~~~fDLIfIDa~h---~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~--- 291 (327)
+ ..++ .++..- +++.+ |. ..+||+|.+=... +..+..+.|+.+...|+|||+||+-+=...
T Consensus 101 -------~-~~~v--~~~~~~-gLQ~f~P~-~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 101 -------D-NPRV--GEFYCV-GLQDFTPE-EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF 168 (218)
T ss_dssp -------G-GCCE--EEEEES--GGG-----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE
T ss_pred -------c-CCCc--ceEEec-CHhhccCC-CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC
Confidence 0 0110 222211 12211 22 3689999987542 335677789999999999999998653321
Q ss_pred ----CCch---hHHHHHHHHHHHcCCeEEE
Q 041517 292 ----ADNR---GVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 292 ----~~~~---GV~~Av~~f~~~~gl~v~~ 314 (327)
.... --.+.+..+++.-|+++..
T Consensus 169 ~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 169 DEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp EEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred cccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 1111 1345666777888988754
No 222
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.69 E-value=0.012 Score=50.86 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 142 SYGAVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 142 ~~g~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
.|...|.+.+.... ++-|+|+|-|.|.+-=+|-+. -++.+|+.+|-.-.... +
T Consensus 13 aQR~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~----~p~R~I~vfDR~l~~hp------~--------------- 67 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREI----FPDRRIYVFDRALACHP------S--------------- 67 (160)
T ss_dssp HHHHHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH------SS-EEEEESS--S-G------G---------------
T ss_pred HHHHHHHHHHHHhcCCCCceEEeccCCCccHHHHHHh----CCCCeEEEEeeecccCC------C---------------
Confidence 45567777776654 689999999999999999885 45999999998543211 0
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhh---cCCcEeEEEEcCCCCCCcHHHHHH-----HHHccCCCCeEEEEEcCCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCE---WGVVGDLIEIDAGHDFNSAWADIN-----RAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~---l~~~fDLIfIDa~h~~~~v~~dl~-----~~~~lL~pGGvIi~dD~~~ 290 (327)
-...+ -.+..|+..++|+. .+.+.-|++.|-+-.+...-.... .+.++|.|||+++-.+-..
T Consensus 68 -~~P~~--------~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 68 -STPPE--------EDLILGDIRETLPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp -G---G--------GGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred -CCCch--------HheeeccHHHHhHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 00000 23567887777765 468899999996543433112222 3357999999999877554
No 223
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.55 E-value=0.024 Score=44.22 Aligned_cols=105 Identities=19% Similarity=0.127 Sum_probs=63.3
Q ss_pred EEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeee
Q 041517 159 IIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSS 238 (327)
Q Consensus 159 VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~ 238 (327)
++|+|||.|..+ .++.. ......++++|..+.+...++... .. .+.. . +.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~------------------~~-~~~~-~---~~~~~ 104 (257)
T COG0500 52 VLDIGCGTGRLA-LLARL---GGRGAYVVGVDLSPEMLALARARA------------------EG-AGLG-L---VDFVV 104 (257)
T ss_pred eEEecCCcCHHH-HHHHh---CCCCceEEEEeCCHHHHHHHHhhh------------------hh-cCCC-c---eEEEE
Confidence 999999999988 44442 111248899999887766422210 00 1100 0 23444
Q ss_pred cchhh-hhhhcC-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 239 GSALT-KLCEWG-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 239 gda~~-~L~~l~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++... .++... ..||++.....+........+..+.+.++|||.+++.+...
T Consensus 105 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 105 ADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44333 123222 37999844443323224678999999999999999888875
No 224
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.54 E-value=0.023 Score=55.95 Aligned_cols=115 Identities=14% Similarity=0.015 Sum_probs=82.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++||-+|-|-|.-+..+.+ .+.-.+|+-+|.++.|.+++++.-- +..+....+.+. .+
T Consensus 289 ~a~~vLvlGGGDGLAlRellk----yP~~~qI~lVdLDP~miela~~~~v--------------lr~~N~~sf~dp--Rv 348 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK----YPQVEQITLVDLDPRMIELASHATV--------------LRALNQGSFSDP--RV 348 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh----CCCcceEEEEecCHHHHHHhhhhhH--------------hhhhccCCccCC--ee
Confidence 468999999999988777776 4558999999999999998875310 111111112221 27
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcH------HHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSA------WADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v------~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.....|+...+..-.+.||+|++|-.-+.++. .+.+..+.++|+++|++++.-..
T Consensus 349 ~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 349 TVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred EEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 78889998888776789999999954433332 24567778899999999986544
No 225
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.53 E-value=0.0048 Score=58.51 Aligned_cols=142 Identities=18% Similarity=0.089 Sum_probs=78.8
Q ss_pred HHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCC-----CCcEEEEEeCCCCChhhhhhhcc--cCccccc-hHH
Q 041517 145 AVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLG-----LDSQILCIDDFRGWPGFRDKFKE--IPMVNGN-VLL 214 (327)
Q Consensus 145 ~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~-----~~~~V~~ID~~~~~~~~A~~~~~--~~~~~g~-~~~ 214 (327)
.++..|+... ++-+|...||.+|-=.-.||.++.... ..-+|++.|++...++.|++-.. ....-+- ...
T Consensus 84 ~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~ 163 (268)
T COG1352 84 EVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPEL 163 (268)
T ss_pred HHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHH
Confidence 3555555433 377999999999965444444444333 36899999999998888865211 0010011 111
Q ss_pred HHHHHHHHhh--hccCCccc-ceEeeecchhhhhhhcCCcEeEEEEcCC---CCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 215 YFQFLQNVIY--QNAIDSVL-PVPFSSGSALTKLCEWGVVGDLIEIDAG---HDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 215 ~~~Fl~nv~~--~g~~~~v~-~V~~~~gda~~~L~~l~~~fDLIfIDa~---h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
..++...... ....+.+. -|.|...+-.+.-+ ..+.||+||+-=- .+.+.-.+-++.+...|+|||++++-.
T Consensus 164 ~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 164 LRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred HhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1122211110 00011111 16666665444211 3467999996421 112334467899999999999998743
No 226
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.50 E-value=0.004 Score=61.12 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=72.0
Q ss_pred HHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 145 AVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 145 ~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
+++....+.++ +..|||+-||.|..++.+|.. ..+|++||..+.+.+.|+++ .
T Consensus 184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~------~~~V~gvE~~~~av~~A~~N-------------------a 238 (352)
T PF05958_consen 184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK------AKKVIGVEIVEEAVEDAREN-------------------A 238 (352)
T ss_dssp HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC------SSEEEEEES-HHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh------CCeEEEeeCCHHHHHHHHHH-------------------H
Confidence 45555555544 348999999999999999984 57899999999988888774 3
Q ss_pred hhhccCCcccceEeeecchhhhhhhc---------------CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEW---------------GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l---------------~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
...+.. . +.|..+++.+....+ ...+|+|++|-.-..-. ...++.+.+ + ..||---
T Consensus 239 ~~N~i~-n---~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~-~~~~~~~~~-~---~~ivYvS 309 (352)
T PF05958_consen 239 KLNGID-N---VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD-EKVIELIKK-L---KRIVYVS 309 (352)
T ss_dssp HHTT---S---EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC-HHHHHHHHH-S---SEEEEEE
T ss_pred HHcCCC-c---ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch-HHHHHHHhc-C---CeEEEEE
Confidence 333321 1 667666554432111 13689999994322211 022333322 3 3677666
Q ss_pred CCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 288 YFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 288 ~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+.. .-..+-+..+.+ |+++.
T Consensus 310 CnP----~tlaRDl~~L~~--~y~~~ 329 (352)
T PF05958_consen 310 CNP----ATLARDLKILKE--GYKLE 329 (352)
T ss_dssp S-H----HHHHHHHHHHHC--CEEEE
T ss_pred CCH----HHHHHHHHHHhh--cCEEE
Confidence 654 234455555543 55543
No 227
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.024 Score=57.25 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=72.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+++|+=||.|.+++.+|.. ..+|+++|+++++.+.|++ |+...+.. .+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A~~-------------------NA~~n~i~----N~ 343 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAAQE-------------------NAAANGID----NV 343 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHHHH-------------------HHHHcCCC----cE
Confidence 4568999999999999999963 7899999999999998877 44433432 28
Q ss_pred EeeecchhhhhhhcC--CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 235 PFSSGSALTKLCEWG--VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 235 ~~~~gda~~~L~~l~--~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.|..+++.+.++.+. ..+|.|++|---..-+ .++-..+..++|-.++-+
T Consensus 344 ~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~~~~p~~IvYV 394 (432)
T COG2265 344 EFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLAKLKPKRIVYV 394 (432)
T ss_pred EEEeCCHHHHhhhccccCCCCEEEECCCCCCCC--HHHHHHHHhcCCCcEEEE
Confidence 888999999877763 6889999994332222 344444444666665544
No 228
>PRK10742 putative methyltransferase; Provisional
Probab=96.21 E-value=0.016 Score=54.29 Aligned_cols=107 Identities=10% Similarity=0.071 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCCC--EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 144 GAVFGNLIDKVRPR--VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 144 g~lL~~L~~~~~p~--~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
++.|...+...+.. +|||+=+|.|.-++.+|.. +++|+.||-++....+.++.
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dg------------------- 129 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDG------------------- 129 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHH-------------------
Confidence 44555555443444 7999999999999999974 78899999998766554442
Q ss_pred Hhhh----ccCCcc-cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc----HHHHHHHHHc
Q 041517 222 VIYQ----NAIDSV-LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS----AWADINRAWR 275 (327)
Q Consensus 222 v~~~----g~~~~v-~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~----v~~dl~~~~~ 275 (327)
+... .....+ ..+.+..+++.+.|......||+||+|-..+... +...++.+..
T Consensus 130 L~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~ 192 (250)
T PRK10742 130 LARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQS 192 (250)
T ss_pred HHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHH
Confidence 2111 000000 1288889999999887767899999997654322 3444554444
No 229
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.17 E-value=0.0047 Score=51.69 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=34.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
+|+||||+.|..++++++. +++.++++||+++.+.+..+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~----~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK----GAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHh----CCCCEEEEEecCHHHHHHHHHH
Confidence 4899999999999999884 5567999999999988766654
No 230
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.008 Score=52.16 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=56.1
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+.... ..++++++|||+|...+..+ ++....|+++|++++..+...++.
T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s-----m~~~e~vlGfDIdpeALEIf~rNa------------------ 91 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS-----MPKNESVLGFDIDPEALEIFTRNA------------------ 91 (185)
T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhh-----cCCCceEEeeecCHHHHHHHhhch------------------
Confidence 4555555443 47899999999999884433 456889999999999888776643
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA 259 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa 259 (327)
...... +++.+.+-.+. ...++.||-+.+|-
T Consensus 92 -eEfEvq-----idlLqcdildl-e~~~g~fDtaviNp 122 (185)
T KOG3420|consen 92 -EEFEVQ-----IDLLQCDILDL-ELKGGIFDTAVINP 122 (185)
T ss_pred -HHhhhh-----hheeeeeccch-hccCCeEeeEEecC
Confidence 222211 33444443332 22247899999984
No 231
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.10 E-value=0.073 Score=52.22 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=66.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..++|||||..|..|..+++. +.+|++||..+-... +... .+ |
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~~~------------------------L~~~---~~---V 254 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMAQS------------------------LMDT---GQ---V 254 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcCHh------------------------hhCC---CC---E
Confidence 4679999999999999999984 679999996442111 1111 12 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC---eEEEEEcCCCCCCchhHHHHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPG---GVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG---GvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
....+++....+. ..++|+++.|..-... .-.+.+.+.|..| -.|+---.....++..|++..+.+
T Consensus 255 ~h~~~d~fr~~p~-~~~vDwvVcDmve~P~---rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i 323 (357)
T PRK11760 255 EHLRADGFKFRPP-RKNVDWLVCDMVEKPA---RVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELI 323 (357)
T ss_pred EEEeccCcccCCC-CCCCCEEEEecccCHH---HHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 6666665554443 4689999999875333 3334444444444 233322222234556677765544
No 232
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.99 E-value=0.018 Score=54.91 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=67.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhcc---CCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQ---LGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~---l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..++......+|+|-.||+|.+.+.+.+.++. ......++|+|+++....+++- |
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~-------------------n 96 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKL-------------------N 96 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHH-------------------H
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHh-------------------h
Confidence 46666665555668999999999998887774311 1247899999999887766643 2
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCC---C-------------------CCCcHHHHHHHHHccCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAG---H-------------------DFNSAWADINRAWRILR 278 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~---h-------------------~~~~v~~dl~~~~~lL~ 278 (327)
+...+..... ..+..+++...-... ...||+|+..-- . ....-+..++.++..|+
T Consensus 97 l~l~~~~~~~--~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk 174 (311)
T PF02384_consen 97 LLLHGIDNSN--INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK 174 (311)
T ss_dssp HHHTTHHCBG--CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE
T ss_pred hhhhcccccc--ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc
Confidence 2222211110 235556655432221 368999986411 1 01122356788999999
Q ss_pred CCeEE
Q 041517 279 PGGVI 283 (327)
Q Consensus 279 pGGvI 283 (327)
+||.+
T Consensus 175 ~~G~~ 179 (311)
T PF02384_consen 175 PGGRA 179 (311)
T ss_dssp EEEEE
T ss_pred cccce
Confidence 99953
No 233
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.056 Score=49.31 Aligned_cols=103 Identities=22% Similarity=0.301 Sum_probs=68.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|+|+|+.-|.=+-.+++. ++++++|++||+.+--+- . ++.. +.-.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~---~~~~~~ivavDi~p~~~~-~---------------------~V~~-------iq~d 93 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKK---LGAGGKIVAVDILPMKPI-P---------------------GVIF-------LQGD 93 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHH---hCCCCcEEEEECcccccC-C---------------------CceE-------Eeee
Confidence 579999999999999888885 677888999999774321 0 1100 0122
Q ss_pred eeecchhhhhh-hcC-CcEeEEEEcCCCCC------------CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLC-EWG-VVGDLIEIDAGHDF------------NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~-~l~-~~fDLIfIDa~h~~------------~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...+..+.|. .++ .++|+|..|+...- +-....++.+...|+|||..++-++.-
T Consensus 94 ~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 94 ITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred ccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 22333444332 233 45799999976411 113445778899999999999988775
No 234
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.73 E-value=0.051 Score=58.13 Aligned_cols=81 Identities=10% Similarity=-0.039 Sum_probs=59.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCC--------------------------------------CcEEEEEeCCCCChh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGL--------------------------------------DSQILCIDDFRGWPG 197 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~--------------------------------------~~~V~~ID~~~~~~~ 197 (327)
...++|-+||+|...+..|.+..+.+| ..+++++|+++.+.+
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 568999999999999888775433332 236889999888888
Q ss_pred hhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEc
Q 041517 198 FRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEID 258 (327)
Q Consensus 198 ~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfID 258 (327)
.|++ |+...|+.+. |.+..+|..+.-... .+.||+|+.+
T Consensus 271 ~A~~-------------------N~~~~g~~~~---i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 271 AARK-------------------NARRAGVAEL---ITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred HHHH-------------------HHHHcCCCcc---eEEEeCChhhcccccccCCCCEEEEC
Confidence 7766 6777777665 788888877642222 2469999988
No 235
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.61 E-value=0.062 Score=50.72 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=63.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..++||||.|-|.-|..|+.. =.+|++-|.+..|... +...|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~------f~~v~aTE~S~~Mr~r-----------------------L~~kg~------- 137 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL------FKEVYATEASPPMRWR-----------------------LSKKGF------- 137 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh------cceEEeecCCHHHHHH-----------------------HHhCCC-------
Confidence 4578999999999999999986 3569999998877532 222222
Q ss_pred EeeecchhhhhhhcCCcEeEEEE----cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI----DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI----Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+... ..+ ...-+.+||+|-. |=. ..+..-|+.+.+.|+|+|++|+.=+..
T Consensus 138 ~vl~--~~~-w~~~~~~fDvIscLNvLDRc---~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 138 TVLD--IDD-WQQTDFKFDVISCLNVLDRC---DRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred eEEe--hhh-hhccCCceEEEeehhhhhcc---CCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 1111 111 1222468999973 422 335678899999999999988765543
No 236
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.61 E-value=0.063 Score=50.89 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=42.0
Q ss_pred HHHHHHHHhh---cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 144 GAVFGNLIDK---VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 144 g~lL~~L~~~---~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
..+|..|.+. .+|.+|||+|+|.|..++.+... .+.-.+++++|.++.|.++++..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~---~~~~~~~~~vd~s~~~~~l~~~l 77 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREV---WPSLKEYTCVDRSPEMLELAKRL 77 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHH---hcCceeeeeecCCHHHHHHHHHH
Confidence 3466666543 36899999999999876666654 33467899999999998877653
No 237
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.56 E-value=0.042 Score=56.03 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=77.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+-++|+|...+.|.+|..|... . |...-+-+... .+ ++.-+-..|+
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~------~--VWVMNVVP~~~----~n---------------tL~vIydRGL------ 410 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD------P--VWVMNVVPVSG----PN---------------TLPVIYDRGL------ 410 (506)
T ss_pred cceeeeeeecccccHHHHHhccC------C--ceEEEecccCC----CC---------------cchhhhhccc------
Confidence 34579999999999999888652 2 44333322210 00 0112222333
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCC----CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDF----NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~----~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
|-..+ |=-+.++.++.+|||||.|+-.+. -.+..-+-++-|+|||||.+|+.|-. .+-.-++.++...+
T Consensus 411 IG~yh-DWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~------~vl~~v~~i~~~lr 483 (506)
T PF03141_consen 411 IGVYH-DWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV------DVLEKVKKIAKSLR 483 (506)
T ss_pred chhcc-chhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH------HHHHHHHHHHHhCc
Confidence 22211 223446677899999999865432 33445577889999999999997764 47888888999888
Q ss_pred CeEEE
Q 041517 310 LKVQI 314 (327)
Q Consensus 310 l~v~~ 314 (327)
++++.
T Consensus 484 W~~~~ 488 (506)
T PF03141_consen 484 WEVRI 488 (506)
T ss_pred ceEEE
Confidence 88764
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.12 Score=48.23 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=74.8
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+.++|||||+.+|.+|-++.+. + -.+||+||.--+-.... +. .+.+++.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~----g-Ak~VyavDVG~~Ql~~k----------------------LR---~d~rV~~ 127 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR----G-AKHVYAVDVGYGQLHWK----------------------LR---NDPRVIV 127 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc----C-CcEEEEEEccCCccCHh----------------------Hh---cCCcEEE
Confidence 35789999999999999999883 3 57899999966533211 00 0112111
Q ss_pred eEeeecchhhhh-hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE-cC--------------CCCCCc-hh
Q 041517 234 VPFSSGSALTKL-CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH-DY--------------FTAADN-RG 296 (327)
Q Consensus 234 V~~~~gda~~~L-~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d-D~--------------~~~~~~-~G 296 (327)
++ .-++...- ....+..|++++|... -+....|-.+..++++|+-++.= -- ..++.. .-
T Consensus 128 ~E--~tN~r~l~~~~~~~~~d~~v~DvSF--ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~ 203 (245)
T COG1189 128 LE--RTNVRYLTPEDFTEKPDLIVIDVSF--ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAE 203 (245)
T ss_pred Ee--cCChhhCCHHHcccCCCeEEEEeeh--hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHH
Confidence 11 11111110 1234578999999875 45557788888899998855531 00 001111 12
Q ss_pred HHHHHHHHHHHcCCeEE
Q 041517 297 VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 297 V~~Av~~f~~~~gl~v~ 313 (327)
|..-+..|+.+.|+++.
T Consensus 204 v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 204 VLSKIENFAKELGFQVK 220 (245)
T ss_pred HHHHHHHHHhhcCcEEe
Confidence 55666777888887754
No 239
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.38 E-value=0.16 Score=50.99 Aligned_cols=135 Identities=16% Similarity=0.087 Sum_probs=86.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||..+.-|.=|.+||..|+ ..|.|++-|.+..-...- .+|+...|..+.+
T Consensus 242 gERIlDmcAAPGGKTt~IAalMk---n~G~I~AnD~n~~r~~~l-------------------~~n~~rlGv~nti---- 295 (460)
T KOG1122|consen 242 GERILDMCAAPGGKTTHIAALMK---NTGVIFANDSNENRLKSL-------------------KANLHRLGVTNTI---- 295 (460)
T ss_pred CCeecchhcCCCchHHHHHHHHc---CCceEEecccchHHHHHH-------------------HHHHHHhCCCceE----
Confidence 46999999999999999999854 589999999987644322 2366666655442
Q ss_pred eeecchhhhh-hhcCCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 236 FSSGSALTKL-CEWGVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 236 ~~~gda~~~L-~~l~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
....|..+.- ...++.||=|.+||--+... -.+-|..+..++++||+|+-..+--.
T Consensus 296 v~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 296 VSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred EEccCcccccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 2233333210 12335899999997543200 12346778899999999999888753
Q ss_pred CCchhHHHHHHHH-HHHc-CCeEEEccceE
Q 041517 292 ADNRGVRRAVNLF-AKIN-GLKVQIDGQHW 319 (327)
Q Consensus 292 ~~~~GV~~Av~~f-~~~~-gl~v~~~gq~w 319 (327)
+.-.++|-++ ..+. .+++.+.|..|
T Consensus 376 ---~~ENE~vV~yaL~K~p~~kL~p~~~~i 402 (460)
T KOG1122|consen 376 ---VEENEAVVDYALKKRPEVKLVPTGLDI 402 (460)
T ss_pred ---hhhhHHHHHHHHHhCCceEeccccccC
Confidence 2223444433 3333 56666665544
No 240
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.24 E-value=0.066 Score=50.90 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+..|||||-|+|..|..|.++ +.+|+++|.++.|...-++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~k 98 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEK 98 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHH
Confidence 4689999999999999999996 8999999999998764443
No 241
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.15 E-value=0.062 Score=53.39 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=75.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC-cccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID-SVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~-~v~~ 233 (327)
++-+|||.=+++|.=++-++.- ++...+|++-|+++...+..++ |+...+..+ +
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E---~~~~~~v~~NDi~~~a~~~i~~-------------------N~~~N~~~~~~--- 103 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKE---LAGVDKVTANDISPEAVELIKR-------------------NLELNGLEDER--- 103 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH----SSECEEEEEES-HHHHHHHHH-------------------HHHHCT-SGCC---
T ss_pred CCceEEeccccccHHHHHHHHH---cCCCCEEEEecCCHHHHHHHHH-------------------hHhhccccCce---
Confidence 3558999999999999998884 4556799999999987776655 665555554 4
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
++....|+-..|......||+|=||. |-.+...++.+++-++.||+|++.--.
T Consensus 104 ~~v~~~DAn~ll~~~~~~fD~IDlDP---fGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 104 IEVSNMDANVLLYSRQERFDVIDLDP---FGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEEES-HHHHHCHSTT-EEEEEE-----SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EEEehhhHHHHhhhccccCCEEEeCC---CCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 78888898887755568999999985 344557999999999999999986544
No 242
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.01 E-value=0.038 Score=50.00 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=73.1
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++...+....-+.+.++|+|+|-.+...|.+ -.+|++|+.++.-...++++ +...
T Consensus 23 vF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~------A~rViAiE~dPk~a~~a~eN-------------------~~v~ 77 (252)
T COG4076 23 VFTSAIAEVAEDTFADLGAGSGILSVVAAHA------AERVIAIEKDPKRARLAEEN-------------------LHVP 77 (252)
T ss_pred HHHHHHHHHhhhceeeccCCcchHHHHHHhh------hceEEEEecCcHHHHHhhhc-------------------CCCC
Confidence 3344444445589999999999999998886 57899999999887777763 3222
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEE---EcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIE---IDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIf---IDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
|.. .++...||+.+. .. +..|.|. +|...-.+....-++.++..||..+.||=..+.
T Consensus 78 g~~----n~evv~gDA~~y--~f-e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 78 GDV----NWEVVVGDARDY--DF-ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred CCc----ceEEEecccccc--cc-cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence 321 167778887763 11 3456665 343332333334567777788888877654443
No 243
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.90 E-value=0.66 Score=42.85 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=87.4
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.++.||||--||..+.+.+ .++...+++.|+.++-.+.|.+ |+...++.++ ++.
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~----~~~~~~~va~eV~~gpl~~a~~-------------------~v~~~~l~~~---i~v 71 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVK----NNPASTAVAGEVVPGPLESAIR-------------------NVKKNNLSER---IDV 71 (226)
T ss_pred CceeeccCchhHhHHHHHh----cCCcceEEEeecccCHHHHHHH-------------------HHHhcCCcce---EEE
Confidence 4499999999999999988 3568899999999998876655 5555666666 777
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+.+|.+..|. .+..+|.|.|-|.- ..-...-+++-...|+.=-.+|+.--.. ..-++++...+++++.
T Consensus 72 r~~dgl~~l~-~~d~~d~ivIAGMG-G~lI~~ILee~~~~l~~~~rlILQPn~~-------~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 72 RLGDGLAVLE-LEDEIDVIVIAGMG-GTLIREILEEGKEKLKGVERLILQPNIH-------TYELREWLSANSYEIK 139 (226)
T ss_pred eccCCccccC-ccCCcCEEEEeCCc-HHHHHHHHHHhhhhhcCcceEEECCCCC-------HHHHHHHHHhCCceee
Confidence 7787766542 24579999998754 2335566777777776544555533322 3567788888888765
No 244
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.68 E-value=0.085 Score=44.33 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=49.6
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCC--CCcH--HHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHD--FNSA--WADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~--~~~v--~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
.+.+..||+.+.|+.+...||.||.|+--+ ++++ .+.++.+.++++|||+++.--. ...|+.-....
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~---------a~~Vr~~L~~a 102 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS---------AGAVRRALQQA 102 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------BHHHHHHHHHC
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec---------hHHHHHHHHHc
Confidence 377888999999999989999999998532 2332 4578999999999999987222 34455555667
Q ss_pred CCeEE
Q 041517 309 GLKVQ 313 (327)
Q Consensus 309 gl~v~ 313 (327)
|++|.
T Consensus 103 GF~v~ 107 (124)
T PF05430_consen 103 GFEVE 107 (124)
T ss_dssp TEEEE
T ss_pred CCEEE
Confidence 88776
No 245
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.40 E-value=0.07 Score=50.70 Aligned_cols=147 Identities=15% Similarity=0.077 Sum_probs=81.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhc-ccCccccchH---HHHHHHHHHhhhc-----
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFK-EIPMVNGNVL---LYFQFLQNVIYQN----- 226 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~-~~~~~~g~~~---~~~~Fl~nv~~~g----- 226 (327)
..+||-=|||.|..+.-+|.. +-.+.+.|.+--|.- +-.+. +......... +.+.|........
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll-~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v 129 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLL-ASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPV 129 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHH-HHHHHHcccCCCCcEEEecceecccCCCCHHHhCCce
Confidence 368999999999999999984 678999999887753 32221 1000000000 0001111110000
Q ss_pred -cCC--------cccceEeeecchhhhhhhc--CCcEeEE----EEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC-
Q 041517 227 -AID--------SVLPVPFSSGSALTKLCEW--GVVGDLI----EIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT- 290 (327)
Q Consensus 227 -~~~--------~v~~V~~~~gda~~~L~~l--~~~fDLI----fIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~- 290 (327)
..| .--.+.+..||..+....- .+.||.| |||..+ .+.++++.+..+|||||+.| +...
T Consensus 130 ~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~---Ni~~Yi~tI~~lLkpgG~WI--N~GPL 204 (270)
T PF07942_consen 130 RIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE---NIIEYIETIEHLLKPGGYWI--NFGPL 204 (270)
T ss_pred EeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH---HHHHHHHHHHHHhccCCEEE--ecCCc
Confidence 000 0001445556655543322 2578877 589864 47899999999999999554 3332
Q ss_pred ----CCC-------chhHHHHHHHHHHHcCCeEEE
Q 041517 291 ----AAD-------NRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 291 ----~~~-------~~GV~~Av~~f~~~~gl~v~~ 314 (327)
.+. ..=..+-+..++...|+++..
T Consensus 205 lyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 205 LYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred cccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 111 000234445556677888763
No 246
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.27 E-value=0.13 Score=49.41 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=82.5
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
.+...|++|+-||=|-|.-....++. ..=+.+.-+|++...++..+++. ..+.- |.++.
T Consensus 117 ~s~~npkkvlVVgggDggvlrevikH----~~ve~i~~~eiD~~Vie~sk~y~----------------p~la~-gy~~~ 175 (337)
T KOG1562|consen 117 CSHPNPKKVLVVGGGDGGVLREVIKH----KSVENILLCEIDENVIESSKQYL----------------PTLAC-GYEGK 175 (337)
T ss_pred ccCCCCCeEEEEecCCccceeeeecc----ccccceeeehhhHHHHHHHHHHh----------------HHHhc-ccCCC
Confidence 45667999999999888876666552 34567888888877776665543 23321 22222
Q ss_pred ccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEE-EcCCC
Q 041517 231 VLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFG-HDYFT 290 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~-dD~~~ 290 (327)
.|.+.-||+...+... .++||+|..|.+-..-+ ...+++.+.+.||+||+++. -|..|
T Consensus 176 --~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 176 --KVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred --ceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 2888889998888776 58999999998754433 23567888999999998774 45555
No 247
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.19 E-value=0.11 Score=50.80 Aligned_cols=94 Identities=22% Similarity=0.256 Sum_probs=61.5
Q ss_pred CCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.++|+=+|.| .|-.++.+|++ + +.+|+++|.+++-.+.|++... +.+ +
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka---~--ga~Via~~~~~~K~e~a~~lGA------------------------d~~--i 215 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKA---M--GAEVIAITRSEEKLELAKKLGA------------------------DHV--I 215 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---c--CCeEEEEeCChHHHHHHHHhCC------------------------cEE--E
Confidence 4567777665 45567777775 4 4999999999987777766421 000 2
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.....+..+ ...+.||+|+.=.. ..+++.+++.|++||.+++--..
T Consensus 216 ~~~~~~~~~---~~~~~~d~ii~tv~------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 216 NSSDSDALE---AVKEIADAIIDTVG------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EcCCchhhH---HhHhhCcEEEECCC------hhhHHHHHHHHhcCCEEEEECCC
Confidence 222122222 22234899877544 26889999999999988876665
No 248
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.73 E-value=0.089 Score=53.83 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=62.3
Q ss_pred HHHHHHHHhhc----CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 144 GAVFGNLIDKV----RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 144 g~lL~~L~~~~----~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
.++|...++.. ..+.++|+.||+|.+++.+|+. -.+|++|+++++..+-|+++..
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~------~~~ViGvEi~~~aV~dA~~nA~--------------- 426 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG------VKRVIGVEISPDAVEDAEKNAQ--------------- 426 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc------ccceeeeecChhhcchhhhcch---------------
Confidence 45555555533 2467999999999999999984 6789999999999988887542
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCC----cEe-EEEEcC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGV----VGD-LIEIDA 259 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~----~fD-LIfIDa 259 (327)
..|.+ ..+|+.|.+++.++.+.. .-+ +++||-
T Consensus 427 ----~Ngis----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDP 463 (534)
T KOG2187|consen 427 ----INGIS----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDP 463 (534)
T ss_pred ----hcCcc----ceeeeecchhhccchhcccCCCCCceEEEECC
Confidence 22222 178888888887776532 234 667773
No 249
>PHA01634 hypothetical protein
Probab=93.50 E-value=0.16 Score=43.23 Aligned_cols=43 Identities=26% Similarity=0.176 Sum_probs=35.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+.++|++||.+.|.|+++++.. + -.+|++++..+...+..++
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~----G-AK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR----G-ASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc----C-ccEEEEeccCHHHHHHHHH
Confidence 46899999999999999999873 3 5789999998876655444
No 250
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.47 E-value=0.79 Score=43.54 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=69.9
Q ss_pred HHHHhhcCCCEEEEEcCcchH--HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 148 GNLIDKVRPRVIIEVGSFLGA--SALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~--Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+.|++..+-+..||||||.-. +.=.+|+. ..|+.+|+-+|.++-...+++.... .
T Consensus 61 r~la~~~GIrQFLDlGsGlPT~~nvHevAq~---~~P~aRVVYVD~DPvv~ah~ralL~----------------~---- 117 (267)
T PF04672_consen 61 RYLAEEAGIRQFLDLGSGLPTAGNVHEVAQR---VAPDARVVYVDNDPVVLAHARALLA----------------D---- 117 (267)
T ss_dssp HHHHCTT---EEEEET--S--SS-HHHHHHH---H-TT-EEEEEESSHHHHHCCHHHHT----------------T----
T ss_pred HHHHHhcCcceEEEcccCCCCCCCHhHHHHh---hCCCceEEEECCCchHHHHHHhhhc----------------C----
Confidence 444444466799999998542 34456664 5789999999999976666554321 0
Q ss_pred ccCCcccceEeeecchhh---hh--------hhcCCcEeEEEEcCCC---CCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 226 NAIDSVLPVPFSSGSALT---KL--------CEWGVVGDLIEIDAGH---DFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~---~L--------~~l~~~fDLIfIDa~h---~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
+-.++ ..+..+|..+ .| -.+++++-++++..-| +.+.....+..+...|.||+++++.....+
T Consensus 118 ~~~g~---t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 118 NPRGR---TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp -TTSE---EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCcc---EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 00001 2233332221 12 1235788888887554 224567889999999999999998877663
Q ss_pred CCchhHHHHHHHHHHHcCCe
Q 041517 292 ADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 292 ~~~~GV~~Av~~f~~~~gl~ 311 (327)
. .+...+.+..+.+..+..
T Consensus 195 ~-~p~~~~~~~~~~~~~~~~ 213 (267)
T PF04672_consen 195 G-APERAEALEAVYAQAGSP 213 (267)
T ss_dssp T-SHHHHHHHHHHHHHCCS-
T ss_pred C-CHHHHHHHHHHHHcCCCC
Confidence 2 333334444444444433
No 251
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=93.42 E-value=0.33 Score=50.03 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=35.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCC----CCcEEEEEeCCCCChhhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLG----LDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~----~~~~V~~ID~~~~~~~~A~~ 201 (327)
..+|+|.|||+|.+.+.+++.+.... ....++++|+++.....++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 46899999999999999988754221 13678999999987776655
No 252
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.36 E-value=0.15 Score=47.87 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=60.0
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
+...+++.. +...|||||.|.|..|..|+.. ..++++||.++.+.+.-++..
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~------~~~v~~vE~d~~~~~~L~~~~------------------- 72 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKR------GKRVIAVEIDPDLAKHLKERF------------------- 72 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH------SSEEEEEESSHHHHHHHHHHC-------------------
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc------cCcceeecCcHhHHHHHHHHh-------------------
Confidence 444444433 4689999999999999999986 489999999876655433311
Q ss_pred hhhccCCcccceEeeecchhhhhhhcC---CcEeEEEEcCCCCCCcHHHHHHHHHccCCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWG---VVGDLIEIDAGHDFNSAWADINRAWRILRP 279 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~---~~fDLIfIDa~h~~~~v~~dl~~~~~lL~p 279 (327)
. ...+ +.+..+|+.+. .... ....+|+- +.+|+-....+..++..-+.
T Consensus 73 ~---~~~~---~~vi~~D~l~~-~~~~~~~~~~~~vv~--NlPy~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 73 A---SNPN---VEVINGDFLKW-DLYDLLKNQPLLVVG--NLPYNISSPILRKLLELYRF 123 (262)
T ss_dssp T---TCSS---EEEEES-TTTS-CGGGHCSSSEEEEEE--EETGTGHHHHHHHHHHHGGG
T ss_pred h---hccc---ceeeecchhcc-ccHHhhcCCceEEEE--EecccchHHHHHHHhhcccc
Confidence 1 1122 77778887762 1111 12223332 44555555566666663333
No 253
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=93.35 E-value=0.089 Score=52.05 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=69.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.+..++++||+.|.....++.- ....++++|.++.-...+.+.. +.+.+.. + -
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-----~~~~~~Gl~~n~~e~~~~~~~~--------------~~~~l~~-----k---~ 162 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-----KKAGVVGLDNNAYEAFRANELA--------------KKAYLDN-----K---C 162 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-----ccCCccCCCcCHHHHHHHHHHH--------------HHHHhhh-----h---c
Confidence 3457999999999999999973 2677888888765333222210 0111111 1 1
Q ss_pred EeeecchhhhhhhcCCcEeEEE-EcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIE-IDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIf-IDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +.-+..||.+. +|+.---+.....+++.++.++|||+.+.-++..
T Consensus 163 ~~~~~~~~~~-~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 163 NFVVADFGKM-PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred ceehhhhhcC-CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 1122222221 22246788885 7876545667788999999999999999987765
No 254
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.33 E-value=0.68 Score=42.42 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=64.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+||=+|..+|-+..+++.- .+ .|.+||||.++.... +. + ++.. ...++.|+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDI---v~-~G~iYaVEfs~R~~r---eL----------------l-~~a~--~R~Ni~PI 129 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDI---VG-EGRIYAVEFSPRPMR---EL----------------L-DVAE--KRPNIIPI 129 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhc---cC-CCcEEEEEecchhHH---HH----------------H-HHHH--hCCCceee
Confidence 3579999999999999999985 44 899999999875321 10 1 1111 11223232
Q ss_pred Eeeecchh--hhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEE
Q 041517 235 PFSSGSAL--TKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVI 283 (327)
Q Consensus 235 ~~~~gda~--~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvI 283 (327)
-+||. +....+-+..|+||.|-..+.+. .-...++.-.|++||.+
T Consensus 130 ---L~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa-~I~~~Na~~FLk~~G~~ 176 (231)
T COG1889 130 ---LEDARKPEKYRHLVEKVDVIYQDVAQPNQA-EILADNAEFFLKKGGYV 176 (231)
T ss_pred ---ecccCCcHHhhhhcccccEEEEecCCchHH-HHHHHHHHHhcccCCeE
Confidence 23332 22333447899999998875543 33457778899999833
No 255
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.12 E-value=0.097 Score=49.38 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=75.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHH--HHHHHHHhhhc------
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLY--FQFLQNVIYQN------ 226 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~--~~Fl~nv~~~g------ 226 (327)
+..++||||||. +-..+..+ ..--.+|++.|..+.-.+.-+++.+.+ |..... -++..+++-..
T Consensus 56 ~g~~llDiGsGP--tiy~~lsa---~~~f~~I~l~dy~~~N~~el~kWl~~~---~a~DWs~~~~~v~~lEg~~~~~~e~ 127 (256)
T PF01234_consen 56 KGETLLDIGSGP--TIYQLLSA---CEWFEEIVLSDYSEQNREELEKWLRKE---GAFDWSPFWKYVCELEGKREKWEEK 127 (256)
T ss_dssp -EEEEEEES-TT----GGGTTG---GGTEEEEEEEESSHHHHHHHHHHHTT----TS--THHHHHHHHHHTTSSSGHHHH
T ss_pred CCCEEEEeCCCc--HHHhhhhH---HHhhcceEEeeccHhhHHHHHHHHCCC---CCCCccHHHHHHHhccCCcchhhhH
Confidence 356899999965 22222222 223567999999876544333332211 221111 12222222100
Q ss_pred ---cCC---cccceEeeecchhhhhhhcCCcEeEEEEc-----CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC---
Q 041517 227 ---AID---SVLPVPFSSGSALTKLCEWGVVGDLIEID-----AGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA--- 292 (327)
Q Consensus 227 ---~~~---~v~~V~~~~gda~~~L~~l~~~fDLIfID-----a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~--- 292 (327)
+.. .|++....+.........+..+||.|..= +..+.+.....++.+..+|||||.+|+-.+....
T Consensus 128 e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~ 207 (256)
T PF01234_consen 128 EEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM 207 (256)
T ss_dssp HHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE
T ss_pred HHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE
Confidence 000 12222222222222100123459998743 2344456678899999999999999998887622
Q ss_pred ----Cchh---HHHHHHHHHHHcCCeEEEcc
Q 041517 293 ----DNRG---VRRAVNLFAKINGLKVQIDG 316 (327)
Q Consensus 293 ----~~~G---V~~Av~~f~~~~gl~v~~~g 316 (327)
.++- -++.|.+-..+.|++|....
T Consensus 208 vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 208 VGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 1222 34566666677888876443
No 256
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.92 E-value=1.4 Score=41.27 Aligned_cols=132 Identities=16% Similarity=0.066 Sum_probs=68.9
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..++||=||=. =..++++|.. +...+|+.+|+++-..+.-++.. ...|+ +
T Consensus 43 L~gk~il~lGDD-DLtSlA~al~----~~~~~I~VvDiDeRll~fI~~~a-------------------~~~gl-----~ 93 (243)
T PF01861_consen 43 LEGKRILFLGDD-DLTSLALALT----GLPKRITVVDIDERLLDFINRVA-------------------EEEGL-----P 93 (243)
T ss_dssp STT-EEEEES-T-T-HHHHHHHH----T--SEEEEE-S-HHHHHHHHHHH-------------------HHHT-------
T ss_pred ccCCEEEEEcCC-cHHHHHHHhh----CCCCeEEEEEcCHHHHHHHHHHH-------------------HHcCC-----c
Confidence 357899999953 3334555542 44789999999887666443321 11232 3
Q ss_pred eEeeecchhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 234 VPFSSGSALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 234 V~~~~gda~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
|+....|..+.||. +-+.||++|.|---.-+.+.-.+......|+.-|..++--+...+.-+.....++.+..+.|+-|
T Consensus 94 i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 94 IEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp EEEE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EE
T ss_pred eEEEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCH
Confidence 77777887787765 56899999999766556666677788888887553333333332212344456777777888876
Q ss_pred EE
Q 041517 313 QI 314 (327)
Q Consensus 313 ~~ 314 (327)
.-
T Consensus 174 ~d 175 (243)
T PF01861_consen 174 TD 175 (243)
T ss_dssp EE
T ss_pred HH
Confidence 54
No 257
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.47 E-value=0.082 Score=53.86 Aligned_cols=115 Identities=20% Similarity=0.126 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
....+.+..++-+|||.=+.+|.=++-.|.- ++.-+++++-|.++...+.-++ |+...
T Consensus 100 t~~~~~~~~~~l~vLealsAtGlrslRya~E---l~~v~~v~AnD~~~~aV~~i~~-------------------Nv~~N 157 (525)
T KOG1253|consen 100 TAALLKREEKSLRVLEALSATGLRSLRYAKE---LPGVRQVVANDLNENAVTSIQR-------------------NVELN 157 (525)
T ss_pred ccchhhhccCcchHHHHhhhhhHHHHHHHHH---hcchhhhcccCCCHHHHHHHHh-------------------hhhhc
Confidence 3455556677889999999999999998884 5667889999998877664444 44443
Q ss_pred ccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+..+. |+-..+|+-..+-.. ...||+|.+|- |-..-.+|+.+.+-++.||++++.--
T Consensus 158 ~v~~i---ve~~~~DA~~lM~~~~~~~~~FDvIDLDP---yGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 158 GVEDI---VEPHHSDANVLMYEHPMVAKFFDVIDLDP---YGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred Cchhh---cccccchHHHHHHhccccccccceEecCC---CCCccHHHHHHHHHhhcCCEEEEEec
Confidence 33333 444556665544333 37899999985 33344799999999999999987543
No 258
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=92.45 E-value=0.18 Score=45.80 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=28.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
.+.++|||+|+|.|.-++.-|++ + -..|++.|..+-
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~a----G-A~~v~a~d~~P~ 113 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARA----G-AAEVVAADIDPW 113 (218)
T ss_pred cccceeeecccccChHHHHHHHh----h-hHHHHhcCCChH
Confidence 45799999999999999988875 2 456778887743
No 259
>PRK13699 putative methylase; Provisional
Probab=91.77 E-value=0.64 Score=42.88 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=45.8
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCC-----CC-------CC---c-HHHHHHHHHccCCCCeEEEE-EcCCCCCCch
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAG-----HD-------FN---S-AWADINRAWRILRPGGVIFG-HDYFTAADNR 295 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~-----h~-------~~---~-v~~dl~~~~~lL~pGGvIi~-dD~~~~~~~~ 295 (327)
.++..||+.+.|+.+ ++++|||+.|-- .. .. . ....++++.++|+|||++++ .++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~----- 76 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR----- 76 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc-----
Confidence 356789999988877 589999999921 10 00 0 12457888999999997764 33322
Q ss_pred hHHHHHHHHHHHcCCeEE
Q 041517 296 GVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 296 GV~~Av~~f~~~~gl~v~ 313 (327)
... +...+++.|+.+.
T Consensus 77 -~~~-~~~al~~~GF~l~ 92 (227)
T PRK13699 77 -VDR-FMAAWKNAGFSVV 92 (227)
T ss_pred -HHH-HHHHHHHCCCEEe
Confidence 112 2333456677653
No 260
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.49 E-value=0.19 Score=50.79 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=34.4
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
.||+||+|+|..++..+++ + .-.|+++|.+.-|.+.|++.
T Consensus 69 ~vLdigtGTGLLSmMAvra----g-aD~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRA----G-ADSVTACEVFKPMVDLARKI 108 (636)
T ss_pred EEEEccCCccHHHHHHHHh----c-CCeEEeehhhchHHHHHHHH
Confidence 5899999999999988886 3 45699999999999988763
No 261
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.39 E-value=1 Score=42.31 Aligned_cols=116 Identities=19% Similarity=0.086 Sum_probs=57.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|+|+|.-++.+|... ..+++.=|.-.-...+. .+.+ ..|+...+..+.+.-.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~~~~~~L~-~~~~--------------~~~~~l~~~g~~v~v~ 145 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-----GAEVVLTDLPKVVENLK-FNRD--------------KNNIALNQLGGSVIVA 145 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-----cceeccCCchhhHHHHH-Hhhh--------------hhhhhhhhcCCceeEE
Confidence 57799999999998888888742 56666666644322211 1100 1123322332232223
Q ss_pred EeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+.-+.+.+.-...+.++|+|.. |.--.....-.-+..+..+|..++++.+--..+
T Consensus 146 ~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 146 ILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 33444444322121222788773 332212222234556666777777555544433
No 262
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=91.18 E-value=0.76 Score=44.49 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+.+.+||+=+|.|.-|..|++. ++ +++|+++|.++...+.+++
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~---l~-~g~vigiD~D~~Al~~ak~ 62 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQ---LG-TGRLIGIDRDPQAIAFAKE 62 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHh---CC-CCEEEEEcCCHHHHHHHHH
Confidence 3579999999999999999985 45 4999999999998887765
No 263
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=90.82 E-value=0.87 Score=44.64 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=62.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
-...+|||-|.|..+-.+... .+. |-+|+.+......+.. ++. .| |.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~----fp~--ik~infdlp~v~~~a~-------------------~~~-~g-------V~ 224 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK----YPH--IKGINFDLPFVLAAAP-------------------YLA-PG-------VE 224 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh----CCC--CceeecCHHHHHhhhh-------------------hhc-CC-------cc
Confidence 368999999999999888873 334 5555554443322221 111 11 45
Q ss_pred eeecchhhhhhhcCCcEeEEEEc---CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEID---AGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfID---a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...|+..+..| +-|+||+= ++...++..+.|+.++.-|+|||.||+-|...
T Consensus 225 ~v~gdmfq~~P----~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 225 HVAGDMFQDTP----KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred eecccccccCC----CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 55555544333 35799875 33344667778999999999999777766644
No 264
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=90.72 E-value=0.25 Score=46.18 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=65.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
-..+++|||+.|+.+-++..- + -++++-+|++-+|.+.++.-.+ .-+.+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e----~-vekli~~DtS~~M~~s~~~~qd-------------------------p~i~~~ 122 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE----G-VEKLIMMDTSYDMIKSCRDAQD-------------------------PSIETS 122 (325)
T ss_pred CcceeecccchhhhhHHHHhc----c-hhheeeeecchHHHHHhhccCC-------------------------CceEEE
Confidence 357999999999998886652 2 5789999999998875543211 111133
Q ss_pred eeecchhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 236 FSSGSALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
...+| .+.|+.-+.++|||+.- +.|--++.-..+..+...|||.|+.|..
T Consensus 123 ~~v~D-EE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 123 YFVGD-EEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred EEecc-hhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 33333 24455546789998855 2343344445677888899999987753
No 265
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.67 E-value=0.63 Score=42.44 Aligned_cols=36 Identities=8% Similarity=-0.038 Sum_probs=31.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
...|+|+=-|.||.|..++-+ +++.|+|+++=+.+-
T Consensus 49 g~tVid~~PGgGy~TrI~s~~---vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPA---VGPKGKVYAYVPAEL 84 (238)
T ss_pred CCEEEEEecCCccHhhhhchh---cCCceeEEEecchhh
Confidence 468999999999999999996 788999999987653
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.66 E-value=0.27 Score=45.82 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=46.3
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc--CCcccceE
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA--IDSVLPVP 235 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~--~~~v~~V~ 235 (327)
+|||+=+|.|.=++.+|.. +++|+++|-++-...+.+.- +++...... .+-...|.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dG----------------L~r~~~~~~~~~~~~~ri~ 135 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDG----------------LKRAQQDPELLAEAMRRIQ 135 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHH----------------HHHHHHSTTTHHHHHHHEE
T ss_pred EEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHH----------------HHHHHhCcHhHHHHHhCCE
Confidence 8999999999999999974 68999999988655433321 001100000 00001289
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHD 262 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~ 262 (327)
+..+++.+.|...+.+||+|++|-..+
T Consensus 136 l~~~d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 136 LIHGDALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp EEES-CCCHCCCHSS--SEEEE--S--
T ss_pred EEcCCHHHHHhhcCCCCCEEEECCCCC
Confidence 999999998875468999999997754
No 267
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=90.22 E-value=1.3 Score=46.61 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=75.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+...||++||.-|.=.-..++ .+|.++-|++||+.+--+- . ++. ++.+.|....+
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q---~~pv~slivGvDl~pikp~-~----------~c~----t~v~dIttd~c------- 98 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQ---SMPVGSLIVGVDLVPIKPI-P----------NCD----TLVEDITTDEC------- 98 (780)
T ss_pred ccchheeeccCCcHHHHHHHH---hCCCCceEEEeeeeecccC-C----------ccc----hhhhhhhHHHH-------
Confidence 467899999999975444444 5788999999999875331 0 000 01111111000
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCc------------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNS------------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN 302 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~------------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~ 302 (327)
++ .-...+..| +.|+|.-|+.|..-. ++..++.+...|+.||. ++++++.+.+|+++-.-+.
T Consensus 99 r~---~l~k~l~t~--~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~-fvtkvfrs~dy~~ll~v~~ 172 (780)
T KOG1098|consen 99 RS---KLRKILKTW--KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGT-FVTKVFRSEDYNGLLRVFG 172 (780)
T ss_pred HH---HHHHHHHhC--CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCc-cccccccCCcchHHHHHHH
Confidence 00 000122233 459999998875322 56678888999999999 7888888889999766655
Q ss_pred HHH
Q 041517 303 LFA 305 (327)
Q Consensus 303 ~f~ 305 (327)
.++
T Consensus 173 qLf 175 (780)
T KOG1098|consen 173 QLF 175 (780)
T ss_pred HHH
Confidence 554
No 268
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.42 E-value=4 Score=36.33 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=65.3
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|-=||. ||-++.+|.++.. .+.+|+++|+++...+...+- . ....++.+.+-+.+++. .+ + +.+.
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g-~--~p~~E~~l~~ll~~~~~-~~---~---l~~t 67 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAE--KGHQVIGVDIDEEKVEALNNG-E--LPIYEPGLDELLKENVS-AG---R---LRAT 67 (185)
T ss_dssp EEEEE----STTHHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTT-S--SSS-CTTHHHHHHHHHH-TT---S---EEEE
T ss_pred EEEEECC--CcchHHHHHHHHh--CCCEEEEEeCChHHHHHHhhc-c--ccccccchhhhhccccc-cc---c---chhh
Confidence 4556666 6766666665432 368999999998755432221 1 11112222222222322 12 2 4544
Q ss_pred ecchhhhhhhcCCcEeEEEEcCC------C--CCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHH-HHHHHHHHc
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAG------H--DFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRR-AVNLFAKIN 308 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~------h--~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~-Av~~f~~~~ 308 (327)
.. ..+.+. ..|++||-.. . +...+...++.+.+.+++|-+|++---.. ||..+ -+..+.++.
T Consensus 68 ~~-~~~ai~----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvp----pGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 68 TD-IEEAIK----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVP----PGTTEELLKPILEKR 138 (185)
T ss_dssp SE-HHHHHH----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSS----TTHHHHHHHHHHHHH
T ss_pred hh-hhhhhh----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEE----EeeehHhhhhhhhhh
Confidence 32 223222 3678886422 1 12336677889999999999999866664 78665 555555544
Q ss_pred C
Q 041517 309 G 309 (327)
Q Consensus 309 g 309 (327)
+
T Consensus 139 ~ 139 (185)
T PF03721_consen 139 S 139 (185)
T ss_dssp C
T ss_pred c
Confidence 3
No 269
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.76 E-value=0.95 Score=42.04 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=37.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCC----CcEEEEEeCCCCChhhhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGL----DSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~----~~~V~~ID~~~~~~~~A~~~ 202 (327)
+-+|+|+|.|+|..+.-+.+.++...+ ..+++.||+++.+.+..++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 468999999999999999999886633 57999999999998766554
No 270
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.63 E-value=2.1 Score=41.82 Aligned_cols=100 Identities=24% Similarity=0.302 Sum_probs=62.5
Q ss_pred CCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.++|+=+|+|. |..++.+|+. ++ -.+|+.+|.++.-.++|++.... +. +
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~---~G-a~~Viv~d~~~~Rl~~A~~~~g~-----------------------~~---~ 218 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKL---LG-ASVVIVVDRSPERLELAKEAGGA-----------------------DV---V 218 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---cC-CceEEEeCCCHHHHHHHHHhCCC-----------------------eE---e
Confidence 45899999953 4445445553 44 68999999998877777663210 00 1
Q ss_pred Eeeec-chhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSG-SALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~g-da~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..... +..+....+ +..+|++|-=... ...++.+.+.++|||.+++--+.-
T Consensus 219 ~~~~~~~~~~~~~~~t~g~g~D~vie~~G~-----~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 219 VNPSEDDAGAEILELTGGRGADVVIEAVGS-----PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ecCccccHHHHHHHHhCCCCCCEEEECCCC-----HHHHHHHHHHhcCCCEEEEEeccC
Confidence 11111 222222222 2469998876652 258899999999999888866654
No 271
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.51 E-value=0.9 Score=44.91 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=35.9
Q ss_pred CcEeEEEE-c---CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 250 VVGDLIEI-D---AGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 250 ~~fDLIfI-D---a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
..+++|++ | -+....+....++.+|.+++|||.+++..-.....|.-+.+|=..+.+
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~ 244 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLA 244 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhc
Confidence 45777664 2 112223455689999999999999998777664444445555444443
No 272
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.17 E-value=5.7 Score=40.76 Aligned_cols=128 Identities=9% Similarity=0.010 Sum_probs=68.6
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|.=||+ |+.++.+|..+...+.+.+|+++|.+++..+.-++-. ....+..+ ..++.+. ...+ +.+.
T Consensus 3 ~I~ViG~--GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~---~~~~e~gl-~ell~~~----~~~~---l~~t 69 (473)
T PLN02353 3 KICCIGA--GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQ---LPIYEPGL-DEVVKQC----RGKN---LFFS 69 (473)
T ss_pred EEEEECC--CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCC---CccCCCCH-HHHHHHh----hcCC---EEEE
Confidence 5677777 6666666655444555789999999887665332211 01111111 1222221 1111 4444
Q ss_pred ecchhhhhhhcCCcEeEEEEcCC-----------C--CCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAG-----------H--DFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~-----------h--~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
... .+.+ ...|+|||--. + +...+....+.+.+.|++|-+||.--... +|..+.+...
T Consensus 70 ~~~-~~~i----~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp----~Gtt~~~~~~ 140 (473)
T PLN02353 70 TDV-EKHV----AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP----VKTAEAIEKI 140 (473)
T ss_pred cCH-HHHH----hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCC----CChHHHHHHH
Confidence 332 2222 23577776211 1 11246677788888999988888876665 6766555554
Q ss_pred HHH
Q 041517 305 AKI 307 (327)
Q Consensus 305 ~~~ 307 (327)
..+
T Consensus 141 l~~ 143 (473)
T PLN02353 141 LTH 143 (473)
T ss_pred HHh
Confidence 443
No 273
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.10 E-value=1.9 Score=44.61 Aligned_cols=118 Identities=16% Similarity=0.090 Sum_probs=61.3
Q ss_pred cCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 154 VRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.+|+=+|+|. |..++..|+ .++ .+|+++|.+++-.+.+++........ |....+.....+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak---~lG--A~V~a~D~~~~rle~aeslGA~~v~i-----------~~~e~~~~~~gy 226 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAG---SLG--AIVRAFDTRPEVAEQVESMGAEFLEL-----------DFEEEGGSGDGY 226 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHH---HCC--CEEEEEeCCHHHHHHHHHcCCeEEEe-----------ccccccccccch
Confidence 3578999999964 445555555 455 47999999988777666532100000 000000000000
Q ss_pred ceEeeecchh----hhhhhcCCcEeEEEEcCCCCCCcHHHH-HHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSAL----TKLCEWGVVGDLIEIDAGHDFNSAWAD-INRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~----~~L~~l~~~fDLIfIDa~h~~~~v~~d-l~~~~~lL~pGGvIi~dD~ 288 (327)
+...+.+.. +.+.+....+|+|+--+..+....-.. .+...+.+||||+|+.--+
T Consensus 227 -a~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 227 -AKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred -hhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 000111111 111111245899887666543211134 4999999999998875443
No 274
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=88.06 E-value=6.4 Score=35.89 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=59.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|+.-|.=+-..-+ ..+|.|.|.+||+-.-.+-..-.... ....-++..+.
T Consensus 70 ~~~VlD~G~APGsWsQVavq---r~~p~g~v~gVDllh~~p~~Ga~~i~-~~dvtdp~~~~------------------- 126 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQ---RVNPNGMVLGVDLLHIEPPEGATIIQ-GNDVTDPETYR------------------- 126 (232)
T ss_pred CCEEEEccCCCChHHHHHHH---hhCCCceEEEEeeeeccCCCCccccc-ccccCCHHHHH-------------------
Confidence 57999999999976655444 46789999999995432211000000 00000111110
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCc------------HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNS------------AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~------------v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.-.+.|+ +.+.|+|..|-.+-... ....+..+..+++|+|..++--|.-
T Consensus 127 ----ki~e~lp--~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 127 ----KIFEALP--NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred ----HHHHhCC--CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 0112222 37889999885542111 1223455678899999999977765
No 275
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.47 E-value=0.91 Score=36.88 Aligned_cols=89 Identities=22% Similarity=0.386 Sum_probs=57.4
Q ss_pred chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhh
Q 041517 166 LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKL 245 (327)
Q Consensus 166 ~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L 245 (327)
.|..++.+|++ ++ .+|+++|.++.-.+.+++.. . +.+ +.....+..+.+
T Consensus 2 vG~~a~q~ak~---~G--~~vi~~~~~~~k~~~~~~~G-----------------------a-~~~--~~~~~~~~~~~i 50 (130)
T PF00107_consen 2 VGLMAIQLAKA---MG--AKVIATDRSEEKLELAKELG-----------------------A-DHV--IDYSDDDFVEQI 50 (130)
T ss_dssp HHHHHHHHHHH---TT--SEEEEEESSHHHHHHHHHTT-----------------------E-SEE--EETTTSSHHHHH
T ss_pred hHHHHHHHHHH---cC--CEEEEEECCHHHHHHHHhhc-----------------------c-ccc--cccccccccccc
Confidence 48888889986 44 99999999876555554432 1 010 222222333444
Q ss_pred hhc-C-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 246 CEW-G-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 246 ~~l-~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+ + ..+|.||-=.+. . ..++.++..|++||.+++--...
T Consensus 51 ~~~~~~~~~d~vid~~g~---~--~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 51 RELTGGRGVDVVIDCVGS---G--DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHTTTSSEEEEEESSSS---H--HHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccccccccceEEEEecCc---H--HHHHHHHHHhccCCEEEEEEccC
Confidence 443 2 479988765542 2 68899999999999998866553
No 276
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=86.83 E-value=0.57 Score=44.78 Aligned_cols=111 Identities=20% Similarity=0.091 Sum_probs=69.9
Q ss_pred hhccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH
Q 041517 135 RRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 135 ~~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
.+...|++..+|+..+- ....++++|||.|.-+. ..|..-++++|...+....+++...
T Consensus 28 tr~~~Wp~v~qfl~~~~---~gsv~~d~gCGngky~~--------~~p~~~~ig~D~c~~l~~~ak~~~~---------- 86 (293)
T KOG1331|consen 28 TRAAPWPMVRQFLDSQP---TGSVGLDVGCGNGKYLG--------VNPLCLIIGCDLCTGLLGGAKRSGG---------- 86 (293)
T ss_pred cccCccHHHHHHHhccC---CcceeeecccCCcccCc--------CCCcceeeecchhhhhccccccCCC----------
Confidence 35567877777766542 26789999999986532 2356789999999988776654210
Q ss_pred HHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcC--CC--CCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 215 YFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA--GH--DFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 215 ~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa--~h--~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
......|+.. ++.-..+||.+..=+ .| ....-...+++..+.|+|||-+++-
T Consensus 87 -------------------~~~~~ad~l~-~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 87 -------------------DNVCRADALK-LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred -------------------ceeehhhhhc-CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 0111223332 233346777765332 22 1233456789999999999988773
No 277
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=86.69 E-value=1.2 Score=40.87 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=32.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~ 200 (327)
--.++|||||.|...+.++- +.|+.-+.+.|+.....+..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp----~fPdtLiLGmEIR~KVsdYVk 101 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAP----KFPDTLILGMEIRDKVSDYVK 101 (249)
T ss_pred cceEEeeccCccchhhhccc----cCccceeeeehhhHHHHHHHH
Confidence 34699999999999888887 467999999999776555433
No 278
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=86.52 E-value=2.4 Score=41.00 Aligned_cols=75 Identities=13% Similarity=-0.000 Sum_probs=40.6
Q ss_pred CEEEEEcCcchHHHHH--HHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCcccc
Q 041517 157 RVIIEVGSFLGASALH--MANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDSVLP 233 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~--lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~v~~ 233 (327)
-++||||| |.|.++ |+.. .. +=++++.|+++...+.|++ |+... ++.++
T Consensus 104 v~glDIGT--GAscIYpLLg~~---~~-~W~fvaTdID~~sl~~A~~-------------------nv~~N~~L~~~--- 155 (299)
T PF05971_consen 104 VRGLDIGT--GASCIYPLLGAK---LY-GWSFVATDIDPKSLESARE-------------------NVERNPNLESR--- 155 (299)
T ss_dssp -EEEEES---TTTTHHHHHHHH---HH---EEEEEES-HHHHHHHHH-------------------HHHHT-T-TTT---
T ss_pred eEeecCCc--cHHHHHHHHhhh---hc-CCeEEEecCCHHHHHHHHH-------------------HHHhccccccc---
Confidence 47999999 666554 3332 22 6899999999999988877 55544 56666
Q ss_pred eEeeecchh-hhhhh---cCCcEeEEEEcC
Q 041517 234 VPFSSGSAL-TKLCE---WGVVGDLIEIDA 259 (327)
Q Consensus 234 V~~~~gda~-~~L~~---l~~~fDLIfIDa 259 (327)
|.+...... ..+.. .++.|||....-
T Consensus 156 I~l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 156 IELRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEEEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred eEEEEcCCccccchhhhcccceeeEEecCC
Confidence 555433222 22222 246899998753
No 279
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=86.01 E-value=4.1 Score=40.44 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|+|-=+++|.=++-+|.- .+.. +++.=|+++...+..+++ +......+ ..
T Consensus 53 ~~~v~DalsatGiRgIRya~E---~~~~-~v~lNDisp~Avelik~N-------------------v~~N~~~~----~~ 105 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVE---TGVV-KVVLNDISPKAVELIKEN-------------------VRLNSGED----AE 105 (380)
T ss_pred CeEEeecccccchhHhhhhhh---cCcc-EEEEccCCHHHHHHHHHH-------------------HHhcCccc----ce
Confidence 899999999999999998874 4433 999999999988887764 33221111 33
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
....|+-..|.+....||+|=||- +-.+.-+++.+++-++.||++.+.--..
T Consensus 106 v~n~DAN~lm~~~~~~fd~IDiDP---FGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 106 VINKDANALLHELHRAFDVIDIDP---FGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred eecchHHHHHHhcCCCccEEecCC---CCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 334677676766668899987774 3344578999999999999998765443
No 280
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.53 E-value=2.9 Score=42.80 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=70.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
.+++|-||-|.|....++-.. -+...+++|++++.+.+.+++++. |+++... + |.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~----~p~~~i~~ve~dP~~l~va~q~f~-------------f~q~~r~-----~---V~ 350 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMS----LPKFQITAVEIDPEMLEVATQYFG-------------FMQSDRN-----K---VH 350 (482)
T ss_pred cCcEEEEecCCCccccceeee----cCccceeEEEEChhHhhccHhhhc-------------hhhhhhh-----h---hh
Confidence 456777777778777665543 247899999999999999988764 2222210 0 11
Q ss_pred eeecchhhhhhh------cCCcEeEEEEcCCCCC------Cc----HHHHHHHHHccCCCCeEEEEEcCCCCC
Q 041517 236 FSSGSALTKLCE------WGVVGDLIEIDAGHDF------NS----AWADINRAWRILRPGGVIFGHDYFTAA 292 (327)
Q Consensus 236 ~~~gda~~~L~~------l~~~fDLIfIDa~h~~------~~----v~~dl~~~~~lL~pGGvIi~dD~~~~~ 292 (327)
+ .++.+.+.+ -+..||++++|-+-.. ++ ....+......|.|.|+++++=+-++.
T Consensus 351 i--~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 351 I--ADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred H--hhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 1 122222211 2468999999966322 11 234567778899999999998887753
No 281
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.26 E-value=1.8 Score=43.16 Aligned_cols=80 Identities=11% Similarity=-0.071 Sum_probs=59.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCC----------------------------c-------EEEEEeCCCCChhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLD----------------------------S-------QILCIDDFRGWPGFRD 200 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~----------------------------~-------~V~~ID~~~~~~~~A~ 200 (327)
...++|==||+|-..+-.|...+.+.|+ . .++|+|+++.+.+.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 3579999999999999888764333331 1 3779999888888776
Q ss_pred hhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEc
Q 041517 201 KFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEID 258 (327)
Q Consensus 201 ~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfID 258 (327)
. |...+|..+. |.|.++++.+. +..-+.+|+|+.+
T Consensus 272 ~-------------------NA~~AGv~d~---I~f~~~d~~~l-~~~~~~~gvvI~N 306 (381)
T COG0116 272 A-------------------NARAAGVGDL---IEFKQADATDL-KEPLEEYGVVISN 306 (381)
T ss_pred H-------------------HHHhcCCCce---EEEEEcchhhC-CCCCCcCCEEEeC
Confidence 5 7778888887 99999998763 3322678999886
No 282
>PRK11524 putative methyltransferase; Provisional
Probab=85.22 E-value=1.6 Score=41.34 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=37.6
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCCC----CCCc-------------HHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAGH----DFNS-------------AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~h----~~~~-------------v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+..||+.+.+..+ +++||+|++|--. .+.. ....+.++.++|+|||.|++.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788988877665 4799999998431 1100 124568899999999988764
No 283
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=84.80 E-value=2.7 Score=43.64 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=80.0
Q ss_pred HHHHHHHhhcC------CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 145 AVFGNLIDKVR------PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 145 ~lL~~L~~~~~------p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
+++..|..... ..+|+-+|.|.|-..-...++.+.....-++|+||-++...-.
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivt-------------------- 410 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVT-------------------- 410 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhh--------------------
Confidence 35555554421 4578999999998877766666666678899999999975531
Q ss_pred HHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEc-----CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEID-----AGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfID-----a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++|....+..++ |.++++|-.+.- .-.++.|+++.. ||.+--+ +.|+-+.+.|+|.|+-|=-.|-.
T Consensus 411 L~~~n~~~W~~~---Vtii~~DMR~w~-ap~eq~DI~VSELLGSFGDNELSP--ECLDG~q~fLkpdgIsIP~sYtS 481 (649)
T KOG0822|consen 411 LQNRNFECWDNR---VTIISSDMRKWN-APREQADIIVSELLGSFGDNELSP--ECLDGAQKFLKPDGISIPSSYTS 481 (649)
T ss_pred hhhhchhhhcCe---eEEEeccccccC-CchhhccchHHHhhccccCccCCH--HHHHHHHhhcCCCceEccchhhh
Confidence 234334445555 777777754421 112567887643 4444444 89999999999999988766643
No 284
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=84.67 E-value=6.6 Score=37.02 Aligned_cols=147 Identities=16% Similarity=0.010 Sum_probs=86.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCC--------CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLG--------LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ- 225 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~--------~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~- 225 (327)
+.-.|+|+|-|+|...+..-...++.. ..-.+++|+.++-.....+..+..+ . ...+.++++.+....
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~p-e--l~~~~~~l~~~~~~~~ 134 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVP-F--LCHLADALAPTGPLAT 134 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhh-h--HHHHHHHHhhccCccc
Confidence 356899999999999877666544322 2346788888875433211111000 0 001112222111100
Q ss_pred ------ccCCcccceEeeecchhhhhhhcCC---cEeEEEEcCCCCC--CcHHH--HHHHHHccCCCCeEEEEEcCCCCC
Q 041517 226 ------NAIDSVLPVPFSSGSALTKLCEWGV---VGDLIEIDAGHDF--NSAWA--DINRAWRILRPGGVIFGHDYFTAA 292 (327)
Q Consensus 226 ------g~~~~v~~V~~~~gda~~~L~~l~~---~fDLIfIDa~h~~--~~v~~--dl~~~~~lL~pGGvIi~dD~~~~~ 292 (327)
-..+ .+.+.+..||+.+.++.++. .+|..|.||--+. +.+|. -+....++.+|||.+.-.
T Consensus 135 ~~~~r~~~~g-~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~------ 207 (252)
T COG4121 135 YGCAAAVRHG-LLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATF------ 207 (252)
T ss_pred chhHHhhhcc-hheeeeeeeehhhcCCcccccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceech------
Confidence 0111 22367778999888888776 7999999986543 33444 478889999999998752
Q ss_pred CchhHHHHHHHHHHHcCCeEEE
Q 041517 293 DNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 293 ~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
-...+|+.=....|.+|..
T Consensus 208 ---ssA~~vRr~L~~aGF~v~~ 226 (252)
T COG4121 208 ---AAAIAVRRRLEQAGFTVEK 226 (252)
T ss_pred ---HHHHHHHHHHHHcCceeee
Confidence 1234444445556777776
No 285
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.45 E-value=5.7 Score=38.90 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=31.4
Q ss_pred cCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 154 VRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 154 ~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+..+||.+|+|. |..++.+|++ .+ -.+++++|.+++..+.+++
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~---~g-~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKL---LG-AERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cC-CCEEEEEcCCHHHHHHHHH
Confidence 3456899999977 7777777775 33 2469999998776655544
No 286
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=84.21 E-value=1.2 Score=41.06 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=66.2
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
-++|||||.+.++.+.... --.|+.||+.+..+.+-++. |++. |++-
T Consensus 53 lrlLEVGals~~N~~s~~~-------~fdvt~IDLns~~~~I~qqD---------------Fm~r-----------plp~ 99 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG-------WFDVTRIDLNSQHPGILQQD---------------FMER-----------PLPK 99 (219)
T ss_pred ceEEeecccCCCCcccccC-------ceeeEEeecCCCCCCceeec---------------cccC-----------CCCC
Confidence 5899999998887665433 34499999998766554432 1211 0110
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCC----CcHHHHHHHHHccCCCCeE-----EEEEcCC---CCCCchhHHHHHHHH
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDF----NSAWADINRAWRILRPGGV-----IFGHDYF---TAADNRGVRRAVNLF 304 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~----~~v~~dl~~~~~lL~pGGv-----Ii~dD~~---~~~~~~GV~~Av~~f 304 (327)
.-.+.||+|..---..| ..-.+-+..+..+|+|+|. +++-=-. .+..+- -.+-+.++
T Consensus 100 ----------~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~-~~~~l~~i 168 (219)
T PF11968_consen 100 ----------NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM-TEERLREI 168 (219)
T ss_pred ----------CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc-CHHHHHHH
Confidence 01357888875322222 2234568899999999999 5542111 111111 23566777
Q ss_pred HHHcCCeEE
Q 041517 305 AKINGLKVQ 313 (327)
Q Consensus 305 ~~~~gl~v~ 313 (327)
+...|+...
T Consensus 169 m~~LGf~~~ 177 (219)
T PF11968_consen 169 MESLGFTRV 177 (219)
T ss_pred HHhCCcEEE
Confidence 888887654
No 287
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=83.60 E-value=17 Score=33.52 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcc-cC---ccccch-HHHHHHH
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKE-IP---MVNGNV-LLYFQFL 219 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~-~~---~~~g~~-~~~~~Fl 219 (327)
.++...++...|.+.|-+|-| .-++.|+. +..+|+-+-+|-++.|....++... ++ .....+ .-....+
T Consensus 29 ~~~~~VL~~raPCN~LVFGLg--hdsllW~a----LN~gGrTvFLEEd~~~i~~~~~~~p~leay~V~Y~t~~~~a~~LL 102 (225)
T TIGR01627 29 KLLSDVLTRRSPCNILVFGLA--HQYLMWSS----LNHRGRTVFIEEEKIMIAKAEVNPPNTRIYSVKYHTKVRNAYNLL 102 (225)
T ss_pred HHHHHHHHhcCCceEEEeccC--cchHHHHH----hcCCCeeEEecCCHHHHHHHhhcCCcceEEEEEeehhhhhHHHHH
Confidence 455666677789999999984 44455555 4668888999999998887655331 11 011111 0011222
Q ss_pred HHHhhhccCCcccceE----e-eecchhhhhhh--cCCcEeEEEEcCCCCCCc----HHHHH--HHHHccCCCC---eEE
Q 041517 220 QNVIYQNAIDSVLPVP----F-SSGSALTKLCE--WGVVGDLIEIDAGHDFNS----AWADI--NRAWRILRPG---GVI 283 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~----~-~~gda~~~L~~--l~~~fDLIfIDa~h~~~~----v~~dl--~~~~~lL~pG---GvI 283 (327)
+... +..++ .|+. + ...-++..||. ++...|+|.|||-..|.+ -+..| ...+.+-+.| .=+
T Consensus 103 ~~~~--~~~~C-~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAav~AR~r~~g~~TdV 179 (225)
T TIGR01627 103 QHAR--ANPEC-RPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGSSGSTTDV 179 (225)
T ss_pred HHhc--cCCcc-cCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhhHHHHHHHHHhccCCCCceE
Confidence 1111 10111 1221 1 11123333443 357899999998754422 22222 2233334434 368
Q ss_pred EEEcCCC
Q 041517 284 FGHDYFT 290 (327)
Q Consensus 284 i~dD~~~ 290 (327)
++||+.+
T Consensus 180 fVHDvdR 186 (225)
T TIGR01627 180 FVHDVHR 186 (225)
T ss_pred EEecCCc
Confidence 9999986
No 288
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=81.77 E-value=0.99 Score=43.91 Aligned_cols=63 Identities=24% Similarity=0.401 Sum_probs=39.9
Q ss_pred CcEeEE----EEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC-C-CCCch------hHH---HHHHHHHHHcCCeEEE
Q 041517 250 VVGDLI----EIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF-T-AADNR------GVR---RAVNLFAKINGLKVQI 314 (327)
Q Consensus 250 ~~fDLI----fIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~-~-~~~~~------GV~---~Av~~f~~~~gl~v~~ 314 (327)
+.||.| |||..| .++++++.+...|+|||+.|=-.-. + -.+.+ +|. +-+...+...|+.+..
T Consensus 258 ~~~d~VvTcfFIDTa~---NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAH---NILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEeechH---HHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 367877 689887 4789999999999999987732111 1 01112 333 3344555667877764
Q ss_pred c
Q 041517 315 D 315 (327)
Q Consensus 315 ~ 315 (327)
.
T Consensus 335 e 335 (369)
T KOG2798|consen 335 E 335 (369)
T ss_pred e
Confidence 3
No 289
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=81.43 E-value=1.4 Score=35.04 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=25.7
Q ss_pred cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 248 WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 248 l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
++..+|++++|+.....+ +++-.+...++-||+|++-
T Consensus 8 LG~e~~~~i~d~~~g~~p--nal~a~~gtv~gGGllill 44 (92)
T PF08351_consen 8 LGQEFDLLIFDAFEGFDP--NALAALAGTVRGGGLLILL 44 (92)
T ss_dssp TT--BSSEEEE-SS---H--HHHHHHHTTB-TT-EEEEE
T ss_pred hCCccCEEEEEccCCCCH--HHHHHHhcceecCeEEEEE
Confidence 577899999999888877 9999999999999987764
No 290
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=81.17 E-value=3.3 Score=40.20 Aligned_cols=52 Identities=12% Similarity=-0.011 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+++..|. ..+.+.+||+=.|.|.-|..|.+. +++ ++|+++|-++.+.+.+++
T Consensus 11 Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~---~~~-~~li~~DrD~~a~~~a~~ 62 (310)
T PF01795_consen 11 EVLEALN-PKPGGIYVDCTFGGGGHSKAILEK---LPN-GRLIGIDRDPEALERAKE 62 (310)
T ss_dssp HHHHHHT---TT-EEEETT-TTSHHHHHHHHT----TT--EEEEEES-HHHHHHHHC
T ss_pred HHHHhhC-cCCCceEEeecCCcHHHHHHHHHh---CCC-CeEEEecCCHHHHHHHHH
Confidence 4555553 334679999999999999999984 554 999999999998877765
No 291
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.11 E-value=7.5 Score=37.23 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=53.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+||=+|+ |..+....+.++.++ -.+|+++|.+++-.+.+++.. . +.+ +
T Consensus 169 ~g~~VlV~G~--G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~lG-----------------------a-~~v--i 219 (343)
T PRK09880 169 QGKRVFVSGV--GPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAREMG-----------------------A-DKL--V 219 (343)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHcC-----------------------C-cEE--e
Confidence 3567887886 445444444443343 247999998876655554421 1 000 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.....+..+.. ...+.+|+||--... + ..++.+++.|++||.++.-..
T Consensus 220 ~~~~~~~~~~~-~~~g~~D~vid~~G~---~--~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 220 NPQNDDLDHYK-AEKGYFDVSFEVSGH---P--SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred cCCcccHHHHh-ccCCCCCEEEECCCC---H--HHHHHHHHHhhcCCEEEEEcc
Confidence 11111111211 112358987643332 1 457788899999998887544
No 292
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.82 E-value=3 Score=37.10 Aligned_cols=124 Identities=20% Similarity=0.125 Sum_probs=62.3
Q ss_pred CCchHHHHHHHHHh---hcCCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH
Q 041517 139 GWGSYGAVFGNLID---KVRPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 139 gw~~~g~lL~~L~~---~~~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
-|+....+-...++ ..+.+.|+|+|-| +|.+++.+|. ..++..|..-|-+++..+-.++....
T Consensus 10 iwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~----~a~~~~v~ltdgne~svrnv~ki~~~--------- 76 (201)
T KOG3201|consen 10 IWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIAC----KAPDSSVWLTDGNEESVRNVEKIRNS--------- 76 (201)
T ss_pred ecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheee----ecCCceEEEecCCHHHHHHHHHHHhc---------
Confidence 46554433333333 2346899999975 4555555654 24578888888887665433332111
Q ss_pred HHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 215 YFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 215 ~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
|... +.+.. ..++...-.+. .......||.|.. |+-.-.+....-.+.+..+|+|.|.-++
T Consensus 77 ------n~~s-~~tsc-~vlrw~~~~aq--sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 77 ------NMAS-SLTSC-CVLRWLIWGAQ--SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ------cccc-cccee-hhhHHHHhhhH--HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 1111 11000 00111111111 1122458998874 4443122223446778889999886554
No 293
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=80.58 E-value=2.1 Score=37.78 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=37.8
Q ss_pred HHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhh
Q 041517 144 GAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 144 g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~ 200 (327)
-++++.|++.. +...|||-=+|+|.+++...+. +.+.+++|++++..++|+
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhc
Confidence 45778887654 4679999999999887776654 788999999998877664
No 294
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=80.25 E-value=3.1 Score=41.21 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=38.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCC----CcEEEEEeCCCCChhhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGL----DSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~----~~~V~~ID~~~~~~~~A~~ 201 (327)
+-.++|||.|+|..+.-|.+.++++.| ..+++.||+++......++
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~ 127 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE 127 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence 468999999999999999999877764 7899999999987654433
No 295
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=78.91 E-value=1.6 Score=41.10 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=35.3
Q ss_pred HHHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.|+..+....+ |.+|+|||||.==.++.+.. ..++..++++|++..+.++-..
T Consensus 94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~----~~~~a~Y~a~DID~~~ve~l~~ 147 (251)
T PF07091_consen 94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMP----EAPGATYIAYDIDSQLVEFLNA 147 (251)
T ss_dssp HHHHHHCCCS---SEEEEET-TTCHHHHHTTT----SSTT-EEEEEESBHHHHHHHHH
T ss_pred HHHHHHHhcCCCCchhhhhhccCCceehhhcc----cCCCcEEEEEeCCHHHHHHHHH
Confidence 35555544444 89999999977666666553 4668899999999888776544
No 296
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=78.88 E-value=3.8 Score=40.94 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
++..+....+...|+++|.|.|+.+..|+- +.+..|++||-+....+.|++
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl-----~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSL-----GYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhh-----ccCceEEEeccchHHHHHHHH
Confidence 444444455678999999999999999886 458999999999887766654
No 297
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=78.82 E-value=28 Score=33.21 Aligned_cols=120 Identities=17% Similarity=0.139 Sum_probs=75.2
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
..+++..++...+|+|+|+---|..+..+++..+.-.+.+.||++.+...-.-+ +.+.. ..+
T Consensus 71 ~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~---------------ai~~~--y~~- 132 (321)
T COG4301 71 AEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATAT---------------AILRE--YPG- 132 (321)
T ss_pred HHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHH---------------HHHHh--CCC-
Confidence 345566789999999999888888898887766667899999998865431111 00000 011
Q ss_pred CCcccceEeeecchhhhhhhc---CCcEeEEEEcCC---CCCCcHHHHHHHHHccCCCCe-EEEEEcCCC
Q 041517 228 IDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAG---HDFNSAWADINRAWRILRPGG-VIFGHDYFT 290 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~---h~~~~v~~dl~~~~~lL~pGG-vIi~dD~~~ 290 (327)
++|.-..++-...|..+ +... ++|+... ....+....+..+...|+||- +++.-|-..
T Consensus 133 ----l~v~~l~~~~~~~La~~~~~~~Rl-~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 133 ----LEVNALCGDYELALAELPRGGRRL-FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred ----CeEeehhhhHHHHHhcccCCCeEE-EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 22444445443334333 2333 6666643 434555667888899999996 555666654
No 298
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.50 E-value=13 Score=35.72 Aligned_cols=93 Identities=18% Similarity=0.090 Sum_probs=50.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+||=+|+ |..++..+..++.+....+|+++|.+++-.+.+++. +. ..
T Consensus 164 g~~VlV~G~--G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-----------------------~~------~~ 212 (341)
T cd08237 164 RNVIGVWGD--GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-----------------------DE------TY 212 (341)
T ss_pred CCEEEEECC--CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-----------------------Cc------ee
Confidence 568888997 555555444333322246899999876544443320 10 00
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
. ..+ +.. +..+|+||--...... ...++.+++.|++||.|++--
T Consensus 213 ~-~~~----~~~-~~g~d~viD~~G~~~~--~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 213 L-IDD----IPE-DLAVDHAFECVGGRGS--QSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred e-hhh----hhh-ccCCcEEEECCCCCcc--HHHHHHHHHhCcCCcEEEEEe
Confidence 0 000 111 1137877632332111 257889999999999887643
No 299
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=78.10 E-value=48 Score=29.20 Aligned_cols=59 Identities=20% Similarity=0.056 Sum_probs=33.6
Q ss_pred hcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 247 EWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 247 ~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
.+...||+|+||...-... .+...+.+. -.++|++-+... ....++.++++.+. ..+.+
T Consensus 123 ~l~~~yD~ViiD~pp~~~~--~~~~~~~~~--~D~vilV~~~~~-~~~~~~~~~~~~l~-~~~~~ 181 (204)
T TIGR01007 123 TLRKYFDYIIIDTPPIGTV--TDAAIIARA--CDASILVTDAGE-IKKRDVQKAKEQLE-QTGSN 181 (204)
T ss_pred HHHhcCCEEEEeCCCcccc--chHHHHHHh--CCeEEEEEECCC-CCHHHHHHHHHHHH-hCCCC
Confidence 3456899999998752221 122222221 357777666654 34566777777764 44544
No 300
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.93 E-value=16 Score=36.83 Aligned_cols=122 Identities=19% Similarity=0.207 Sum_probs=64.6
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc-cCCcccceEe
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN-AIDSVLPVPF 236 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g-~~~~v~~V~~ 236 (327)
+|--||+ ||-++..+.++..+ +++|+|+|+++.-.+.-.+- ..+ .++.-++.+...+ ..+| +.+
T Consensus 2 kI~viGt--GYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g-~~P-------I~EpgLe~ll~~~~~~gR---l~f 66 (414)
T COG1004 2 KITVIGT--GYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKG-ISP-------IYEPGLEELLKENLASGR---LRF 66 (414)
T ss_pred ceEEECC--chHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCC-CCC-------CcCccHHHHHHhccccCc---EEE
Confidence 4666777 66555444433223 69999999998755433221 111 1111122222212 2233 666
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCC--------CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHD--------FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~--------~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
....... +. ..|++||--.-+ -..+....+...+.++..-+||.---.. +|-.+-+..
T Consensus 67 Ttd~~~a-~~----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVP----vGt~~~v~~ 132 (414)
T COG1004 67 TTDYEEA-VK----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVP----VGTTEEVRA 132 (414)
T ss_pred EcCHHHH-Hh----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCC----CCchHHHHH
Confidence 6543322 22 358888743322 2235566777888888888888876665 454444443
No 301
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=77.77 E-value=12 Score=36.20 Aligned_cols=45 Identities=11% Similarity=-0.043 Sum_probs=39.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
..+.+||+=-|.|.-+-.+.+. +++.++++++|-++...+.|++.
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~---l~~~~~li~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEK---LPDLGRLIGIDRDPQAIAIAKER 67 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHh---CCCCCeEEEEcCCHHHHHHHHHH
Confidence 3579999999999999998884 77789999999999999888763
No 302
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=77.70 E-value=23 Score=35.20 Aligned_cols=138 Identities=12% Similarity=0.014 Sum_probs=75.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||.+..-|..|+.|.+++......|.|+|=|.+..-...-.+ +. ..+..... .+...
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~---------------q~-~~l~~~~~--~v~~~ 216 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVH---------------QL-KRLPSPNL--LVTNH 216 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHH---------------HH-hccCCcce--eeecc
Confidence 45799999999999999999986644446789998887632211111 00 00000000 00001
Q ss_pred Eeeecchhh--hh-hhcCCcEeEEEEcCCCCC-------Cc-----------------HHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALT--KL-CEWGVVGDLIEIDAGHDF-------NS-----------------AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~--~L-~~l~~~fDLIfIDa~h~~-------~~-----------------v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+....+... .. ..-...||=|++|.--+. +. -+.-+...+++|++||.+|-..
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 111111100 00 001257999999843211 11 1234667889999999999999
Q ss_pred CCCCCC-chh-HHHHHHHHHHHcCC
Q 041517 288 YFTAAD-NRG-VRRAVNLFAKINGL 310 (327)
Q Consensus 288 ~~~~~~-~~G-V~~Av~~f~~~~gl 310 (327)
+..+|. ..+ |.++++......++
T Consensus 297 CSLnpieNEaVV~~~L~~~~~~~~l 321 (375)
T KOG2198|consen 297 CSLNPIENEAVVQEALQKVGGAVEL 321 (375)
T ss_pred cCCCchhhHHHHHHHHHHhcCcccc
Confidence 988652 233 55566555444444
No 303
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=77.16 E-value=12 Score=34.89 Aligned_cols=130 Identities=15% Similarity=0.038 Sum_probs=70.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccc-------hHHHHHH---------
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGN-------VLLYFQF--------- 218 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~-------~~~~~~F--------- 218 (327)
.|-.+=|-+||.||..-.++.. +. ..=..|++-|+++++.+.|+++...-...|- ...+++|
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLL-h~-~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLL-HR-RRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-TG-GGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHh-hh-HHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 4678999999999998888764 21 2246899999999999999887542221121 1111222
Q ss_pred ------HHHHhhhccCCcccceEeeecc-----hhhhhhhcCCcEeEEEEcCC----------CCCCcHHHHHHHHHccC
Q 041517 219 ------LQNVIYQNAIDSVLPVPFSSGS-----ALTKLCEWGVVGDLIEIDAG----------HDFNSAWADINRAWRIL 277 (327)
Q Consensus 219 ------l~nv~~~g~~~~v~~V~~~~gd-----a~~~L~~l~~~fDLIfIDa~----------h~~~~v~~dl~~~~~lL 277 (327)
.+.+... +...|......| ....+ ..+...|+|+-|-- -...++..-|+.+.+.|
T Consensus 129 ~sA~RL~~~l~~~---g~~~p~~~~~aDvf~~~~~~~~-~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vL 204 (246)
T PF11599_consen 129 ESADRLRERLAAE---GGDEPHAIFRADVFDPSPLAVL-DAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVL 204 (246)
T ss_dssp HHHHHHHHHHHHT---TSS--EEEEE--TT-HHHHHHH-HTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhc---CCCCchhheeecccCCchhhhh-ccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhC
Confidence 1111221 123444444432 22222 22445699999821 12245677899999999
Q ss_pred CCCeEEEEEcCCC
Q 041517 278 RPGGVIFGHDYFT 290 (327)
Q Consensus 278 ~pGGvIi~dD~~~ 290 (327)
..++||++.|=..
T Consensus 205 p~~sVV~v~~k~~ 217 (246)
T PF11599_consen 205 PERSVVAVSDKGR 217 (246)
T ss_dssp -TT-EEEEEESSS
T ss_pred CCCcEEEEecCCc
Confidence 8788999855544
No 304
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=76.82 E-value=6.3 Score=37.27 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=36.1
Q ss_pred HHHHHHHHHhh--c-CCCEEEEEcCcchHHHHHHHHHhccC-CCCcEEEEEeCCC
Q 041517 143 YGAVFGNLIDK--V-RPRVIIEVGSFLGASALHMANLTRQL-GLDSQILCIDDFR 193 (327)
Q Consensus 143 ~g~lL~~L~~~--~-~p~~VLEIGt~~G~Sal~lA~a~r~l-~~~~~V~~ID~~~ 193 (327)
|..++..|.+. + ....++|+|||.|..+.+++.++..- .+...++.||-..
T Consensus 3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 34455555432 2 34689999999999999999975321 1467899999854
No 305
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=76.64 E-value=16 Score=36.85 Aligned_cols=127 Identities=13% Similarity=0.015 Sum_probs=69.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|-=||. |+.++.||..+. .+.+|+++|.++.-.+...+- ... ..+..++.+...+ + +
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la---~~~~V~g~D~~~~~ve~l~~G-~~~-------~~e~~~~~l~~~g---~---l 65 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFG---KSRQVVGFDVNKKRILELKNG-VDV-------NLETTEEELREAR---Y---L 65 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHh---cCCEEEEEeCCHHHHHHHHCc-CCC-------CCCCCHHHHHhhC---C---e
Confidence 4567777877 899999998753 358999999998765533211 000 0000111221112 1 3
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCC--------CCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHH-HHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGH--------DFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRR-AVNLFA 305 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h--------~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~-Av~~f~ 305 (327)
.+.... +.+ ...|++|+--.- +...+....+.+.+.|++|.++|..--.. ||..+ .+..+.
T Consensus 66 ~~t~~~--~~~----~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~----pgtt~~~~~~~l 135 (425)
T PRK15182 66 KFTSEI--EKI----KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY----PGCTEEECVPIL 135 (425)
T ss_pred eEEeCH--HHH----cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC----CcchHHHHHHHH
Confidence 333321 112 236777764221 12335555667888999999888766664 56444 344443
Q ss_pred HH-cCC
Q 041517 306 KI-NGL 310 (327)
Q Consensus 306 ~~-~gl 310 (327)
.+ .|+
T Consensus 136 ~~~~g~ 141 (425)
T PRK15182 136 ARMSGM 141 (425)
T ss_pred HhccCC
Confidence 33 344
No 306
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=75.63 E-value=8.5 Score=36.74 Aligned_cols=40 Identities=20% Similarity=0.081 Sum_probs=31.4
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhh
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGF 198 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~ 198 (327)
.+|+=+|. |..+-++|+.++..+....+++.|.+......
T Consensus 4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 46777785 88999999999888888888999987765443
No 307
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=74.77 E-value=25 Score=32.65 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=37.0
Q ss_pred hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 246 CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 246 ~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
..+...||+|+||....... .+...+... -.|+|++-.... .....++++++.+.+ .+.++
T Consensus 207 ~~l~~~yD~ViiD~pp~~~~--~d~~~~~~~--~d~vilV~~~~~-t~~~~~~~~~~~l~~-~~~~~ 267 (274)
T TIGR03029 207 NKVMGDYDVVIVDTPSAEHS--SDAQIVATR--ARGTLIVSRVNE-TRLHELTSLKEHLSG-VGVRV 267 (274)
T ss_pred HHHHhcCCEEEEeCCCcccc--cHHHHHHHh--CCeEEEEEECCC-CCHHHHHHHHHHHHh-CCCCE
Confidence 33457899999998753322 333334332 257777777765 345667777777754 44443
No 308
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=74.74 E-value=17 Score=34.06 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=52.3
Q ss_pred CCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||..|++ .|..++.+|+. . +.++++++.++...+.+++. |. +.+
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~---~--G~~V~~~~~s~~~~~~~~~~-----------------------g~-~~~-- 213 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKA---M--GAAVIAVDIKEEKLELAKEL-----------------------GA-DEV-- 213 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH---c--CCEEEEEcCCHHHHHHHHHh-----------------------CC-CEE--
Confidence 35677777864 35666666664 3 56799998876544433221 11 010
Q ss_pred eEeeecchhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+........+.+.. .+..+|+|+ |... .. ..++..++.|++||.++.-.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~D~vi-d~~g--~~--~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 214 LNSLDDSPKDKKAAGLGGGFDVIF-DFVG--TQ--PTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EcCCCcCHHHHHHHhcCCCceEEE-ECCC--CH--HHHHHHHHHhhcCCEEEEEC
Confidence 11111111111111 135688664 5432 11 46788899999999887643
No 309
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=74.46 E-value=17 Score=34.95 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=52.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+||=+|+ |..+...++.++..+ -.+|+++|..+.-.+.+++. |. +.+ +
T Consensus 176 ~g~~VlV~G~--g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~~-----------------------Ga-~~~--i 226 (358)
T TIGR03451 176 RGDSVAVIGC--GGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAREF-----------------------GA-THT--V 226 (358)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHc-----------------------CC-ceE--E
Confidence 3567888886 444444444433343 23599999877655444332 11 111 1
Q ss_pred Eeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.....+..+.+... +..+|+|+ |+.- .+ ..++.+++.+++||.+++--
T Consensus 227 ~~~~~~~~~~i~~~~~~~g~d~vi-d~~g--~~--~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 227 NSSGTDPVEAIRALTGGFGADVVI-DAVG--RP--ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred cCCCcCHHHHHHHHhCCCCCCEEE-ECCC--CH--HHHHHHHHHhccCCEEEEEC
Confidence 11122222222222 23578765 5432 12 45677888999999887643
No 310
>PRK11524 putative methyltransferase; Provisional
Probab=73.88 E-value=4.8 Score=38.11 Aligned_cols=53 Identities=6% Similarity=-0.054 Sum_probs=42.9
Q ss_pred HHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 144 GAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 144 g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
-+|++.+++.. ....|||-=+|+|.+++...+. +.+.+|||++++..++|++.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l------gR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS------GRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc------CCCEEEEeCCHHHHHHHHHH
Confidence 46888888764 4689999999999887776653 79999999999988887653
No 311
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=73.42 E-value=8.5 Score=36.42 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=62.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+||=+|...|.+-.+.+.. .++++-||++|.+.-.- ++ |-|+... ..+++|
T Consensus 157 GsKVLYLGAasGttVSHvSDi---VGpeG~VYAVEfs~rsG---Rd-----------------L~nmAkk--RtNiiP-- 209 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDI---VGPEGCVYAVEFSHRSG---RD-----------------LINMAKK--RTNIIP-- 209 (317)
T ss_pred CceEEEeeccCCceeehhhcc---cCCCceEEEEEecccch---HH-----------------HHHHhhc--cCCcee--
Confidence 468999999999999999985 79999999999976321 11 1233321 123333
Q ss_pred eeecchhhh--hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEE
Q 041517 236 FSSGSALTK--LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIF 284 (327)
Q Consensus 236 ~~~gda~~~--L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi 284 (327)
++ .|+... ..-+-.-+|+||.|..++...-.-. -.+.-.|++||=++
T Consensus 210 Ii-EDArhP~KYRmlVgmVDvIFaDvaqpdq~Riva-LNA~~FLk~gGhfv 258 (317)
T KOG1596|consen 210 II-EDARHPAKYRMLVGMVDVIFADVAQPDQARIVA-LNAQYFLKNGGHFV 258 (317)
T ss_pred ee-ccCCCchheeeeeeeEEEEeccCCCchhhhhhh-hhhhhhhccCCeEE
Confidence 32 333321 1112358999999998865442222 24556799988433
No 312
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=73.04 E-value=39 Score=29.68 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=56.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh-hcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK-FKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~-~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+|+=|||=+-+-++.- ...++.+++.+|.+.-+.....+ +
T Consensus 25 ~~~~iaclstPsl~~~l~~-----~~~~~~~~~Lle~D~RF~~~~~~~F------------------------------- 68 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-----ESKPRIQSFLLEYDRRFEQFGGDEF------------------------------- 68 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-----hcCCCccEEEEeecchHHhcCCcce-------------------------------
Confidence 3579999999665554443 13458899999998765432211 1
Q ss_pred eEeeecchhhhh-hhcCCcEeEEEEcCCCCCCcHHHHHHHHHc-cCCCCeEEEE
Q 041517 234 VPFSSGSALTKL-CEWGVVGDLIEIDAGHDFNSAWADINRAWR-ILRPGGVIFG 285 (327)
Q Consensus 234 V~~~~gda~~~L-~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~-lL~pGGvIi~ 285 (327)
+ +........+ ..+.++||+|++|--.-.++.+.-+....+ ++++++-|++
T Consensus 69 ~-fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 69 V-FYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred E-ECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence 1 1111112222 234579999999987766666655445555 4467777665
No 313
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=72.51 E-value=30 Score=29.56 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=29.0
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
..||+|++|....... ..........-.++|++-.... ....++.++++.+.+
T Consensus 66 ~~yD~VIiD~pp~~~~---~~~~~~~~~~ad~viiV~~p~~-~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTGD---EHLTLAQSLPIDGAVIVTTPQE-VALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhccCCCeEEEEECCch-hhHHHHHHHHHHHHh
Confidence 5689999998765432 1122232234466666655544 334456566655543
No 314
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=71.81 E-value=6.2 Score=36.85 Aligned_cols=28 Identities=18% Similarity=-0.007 Sum_probs=20.1
Q ss_pred HHHHhccCCCCcEEEEEeCCCCChhhhh
Q 041517 173 MANLTRQLGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 173 lA~a~r~l~~~~~V~~ID~~~~~~~~A~ 200 (327)
+|++++..++..+|+++|.++...+.+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~ 28 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL 28 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH
Confidence 4566666788899999999887665543
No 315
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=71.61 E-value=12 Score=31.68 Aligned_cols=43 Identities=14% Similarity=0.049 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHH-HHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGAS-ALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~S-al~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
+-..+++....++|+|||.|.=.- |..|.+. +..|+++|+.+.
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~------G~dV~~tDi~~~ 47 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKER------GFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHHHHHHH------S-EEEEE-SS-S
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHc------CCcEEEEECccc
Confidence 344555666778999999965433 3334443 589999999887
No 316
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=71.53 E-value=34 Score=34.29 Aligned_cols=125 Identities=13% Similarity=0.067 Sum_probs=65.8
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|.=||. |+.+..||..+... +.+|+++|.++...+..++ ...+. .++.+. .++......|. ...
T Consensus 4 ~kI~VIGl--G~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~-g~~~~--~e~~l~-~~l~~~~~~g~------l~~ 69 (415)
T PRK11064 4 ETISVIGL--GYIGLPTAAAFASR--QKQVIGVDINQHAVDTINR-GEIHI--VEPDLD-MVVKTAVEGGY------LRA 69 (415)
T ss_pred cEEEEECc--chhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHC-CCCCc--CCCCHH-HHHHHHhhcCc------eee
Confidence 46777887 66666666654332 6899999998875542211 01111 111111 11111111221 222
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCC--------CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHD--------FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~--------~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
.. + + ...|+||+-..-+ ...+...++.+.+.+++|.+||..-... +|..+.+.....+.
T Consensus 70 ~~-~----~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~----pgtt~~~~~~l~~~ 136 (415)
T PRK11064 70 TT-T----P----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP----VGATEQMAEWLAEA 136 (415)
T ss_pred ec-c----c----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC----CCHHHHHHHHHHHh
Confidence 21 1 0 2368888643321 1345556778889999998887765554 67666666554443
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=71.35 E-value=29 Score=30.93 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=53.7
Q ss_pred cCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 154 VRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
.+..+||-.|++. |..++.+++. . +.++++++..+...+.+++. +. ..+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~---~--g~~v~~~~~~~~~~~~~~~~-----------------------g~-~~~- 182 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKA---A--GARVIVTDRSDEKLELAKEL-----------------------GA-DHV- 182 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---c--CCeEEEEcCCHHHHHHHHHh-----------------------CC-cee-
Confidence 3467899999875 5555555553 3 47899998876433332221 10 000
Q ss_pred ceEeeecchhhhh-hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSALTKL-CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~~~L-~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+.+ ...+..+|+++.-.... ..++..++.|+++|.++.-..
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-----~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 183 -IDYKEEDLEEELRLTGGGGADVVIDAVGGP-----ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred -ccCCcCCHHHHHHHhcCCCCCEEEECCCCH-----HHHHHHHHhcccCCEEEEEcc
Confidence 111111111111 11135789987543321 356778889999998886443
No 318
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=71.15 E-value=13 Score=38.69 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
++.+|+=+|+ |..++..+..++.++ .+|+.+|..+.-.+.+++
T Consensus 163 p~akVlViGa--G~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGA--GVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 4689999999 555444444444454 569999998876555554
No 319
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.52 E-value=8.9 Score=38.93 Aligned_cols=136 Identities=19% Similarity=0.200 Sum_probs=74.9
Q ss_pred CCEEEEEcC-cchHH--HHHHHHHhccCCCCcEEEEEeCCCCCh-hhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 156 PRVIIEVGS-FLGAS--ALHMANLTRQLGLDSQILCIDDFRGWP-GFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 156 p~~VLEIGt-~~G~S--al~lA~a~r~l~~~~~V~~ID~~~~~~-~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
|..|+=+|- |+|-+ +.-||..++..+...-+++.|++.-.+ +.-++..+ .-++...+.....
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~--------------q~~v~~f~~~~~~ 165 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAE--------------QVGVPFFGSGTEK 165 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHH--------------HcCCceecCCCCC
Confidence 677888874 44444 444788777666677789999977432 11111110 0011111110000
Q ss_pred cceEeeecchhhhhhhc-CCcEeEEEEcC--CCC-CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHH
Q 041517 232 LPVPFSSGSALTKLCEW-GVVGDLIEIDA--GHD-FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKI 307 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l-~~~fDLIfIDa--~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~ 307 (327)
-||.+ +.+.+... ...+|+|++|- .|. .+...+.+..+...++|.=++++-|-....+.-.+.+++++-..-
T Consensus 166 ~Pv~I----ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i 241 (451)
T COG0541 166 DPVEI----AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI 241 (451)
T ss_pred CHHHH----HHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC
Confidence 01111 11112111 36799999994 343 355677889999999999999988887743333355555554443
Q ss_pred cC
Q 041517 308 NG 309 (327)
Q Consensus 308 ~g 309 (327)
.|
T Consensus 242 tG 243 (451)
T COG0541 242 TG 243 (451)
T ss_pred ce
Confidence 34
No 320
>PRK04296 thymidine kinase; Provisional
Probab=69.83 E-value=13 Score=32.93 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=23.5
Q ss_pred EEEEEcC-cchHHHHHHHHHhccCCCCcEEEEE
Q 041517 158 VIIEVGS-FLGASALHMANLTRQLGLDSQILCI 189 (327)
Q Consensus 158 ~VLEIGt-~~G~Sal~lA~a~r~l~~~~~V~~I 189 (327)
.+|=.|. |+|.|+..+..+.+....+.+++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4566787 9999998887765544556777766
No 321
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.55 E-value=36 Score=34.39 Aligned_cols=110 Identities=25% Similarity=0.378 Sum_probs=66.5
Q ss_pred CCEEEEEcC-cchHHHHH--HHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 156 PRVIIEVGS-FLGASALH--MANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 156 p~~VLEIGt-~~G~Sal~--lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
|..|+=+|- |.|..|.+ +|...+.-+-..-++|-|+|...+ ++|..+|....+
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA------------------fDQLkqnA~k~~------ 156 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA------------------FDQLKQNATKAR------ 156 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch------------------HHHHHHHhHhhC------
Confidence 456777775 34444433 666655556677899999987422 123333444333
Q ss_pred ceEee----ecchhhh----hhhc-CCcEeEEEEcC--CCC-CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 233 PVPFS----SGSALTK----LCEW-GVVGDLIEIDA--GHD-FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 233 ~V~~~----~gda~~~----L~~l-~~~fDLIfIDa--~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
|++. ..+.... +... .+.||+|++|- .|. .....+.+..+.+.++|.-+|++-|-.-
T Consensus 157 -iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 157 -VPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred -CeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 2222 1122221 1111 37899999994 453 3456667778888999999999888775
No 322
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=69.18 E-value=36 Score=34.38 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=33.4
Q ss_pred HHHHHHhh----cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhh
Q 041517 146 VFGNLIDK----VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 146 lL~~L~~~----~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~ 200 (327)
.+..+.+. ...++|+=+|+ |..+..++..++..+ .+|+.+|.++.-.+.|+
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~--G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGY--GDVGKGCAQSLRGQG--ARVIVTEVDPICALQAA 242 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECC--CHHHHHHHHHHHHCC--CEEEEEECChhhHHHHH
Confidence 44555543 34689999999 556666666555554 58999999876554443
No 323
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=68.76 E-value=4 Score=34.15 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=23.7
Q ss_pred EEcCcch--HHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 161 EVGSFLG--ASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 161 EIGt~~G--~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
|||++.| .++..+.+. ..+++++|++||+++...+..++
T Consensus 1 DvGA~~G~~~~~~~~~~~--~~~~~~~v~~~Ep~p~~~~~l~~ 41 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK--KCGPGGRVHAFEPNPSNFEKLKR 41 (167)
T ss_dssp EES-TTS--HHHHHHHHH--HTS--SEEEEE---HHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHH--HcCCCCEEEEEECCHHHHHHHhH
Confidence 7999999 777776532 35679999999999986554333
No 324
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=68.10 E-value=56 Score=30.78 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=29.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+|+|+-||.|..+.-+.++ + -..++++|.++...+.-+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~----G-~~~v~a~e~~~~a~~~~~~ 40 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA----G-FEIVAANEIDKSAAETYEA 40 (275)
T ss_pred cEEEEccCcchHHHHHHHc----C-CEEEEEEeCCHHHHHHHHH
Confidence 6899999999998887764 3 3467889998876654444
No 325
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.78 E-value=11 Score=31.62 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=29.7
Q ss_pred HHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 147 L~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
-..+++....++|+|||. |...- .|+.++.. +..|+++|+.+.
T Consensus 5 a~~iAre~~~gkVvEVGi--G~~~~-VA~~L~e~--g~dv~atDI~~~ 47 (129)
T COG1255 5 AEYIARENARGKVVEVGI--GFFLD-VAKRLAER--GFDVLATDINEK 47 (129)
T ss_pred HHHHHHHhcCCcEEEEcc--chHHH-HHHHHHHc--CCcEEEEecccc
Confidence 344566778899999999 55533 34433333 588999999886
No 326
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=67.61 E-value=32 Score=33.21 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=52.4
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||=.|+ +.|..++.+|++ . +.++++++.+++-.+.+++ . .|. +.+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~---~--G~~Vi~~~~~~~k~~~~~~-------------------~---lGa-~~v- 208 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKL---H--GCYVVGSAGSSQKVDLLKN-------------------K---LGF-DEA- 208 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH---c--CCEEEEEcCCHHHHHHHHH-------------------h---cCC-CEE-
Confidence 4567888887 456666777774 3 5678888876543332221 0 121 111
Q ss_pred ceEeeec-chhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 233 PVPFSSG-SALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 233 ~V~~~~g-da~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..... +..+.+... +..+|+|+ |+.- . ..++.+++.|++||.++.
T Consensus 209 -i~~~~~~~~~~~i~~~~~~gvD~v~-d~vG---~--~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 209 -FNYKEEPDLDAALKRYFPEGIDIYF-DNVG---G--DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred -EECCCcccHHHHHHHHCCCCcEEEE-ECCC---H--HHHHHHHHHhccCCEEEE
Confidence 221111 222222222 24588876 5432 1 467888999999998875
No 327
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=67.58 E-value=78 Score=26.98 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=36.5
Q ss_pred CCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 249 GVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 249 ~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
...+|+|+||..... ......+..+.+.+.+.+++++-|... . ..+.+....+.+..+
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~-~--~~~~~~~~~~~~~~~ 140 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT-G--QDAVNQAKAFNEALG 140 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC-C--hHHHHHHHHHHhhCC
Confidence 357899999976543 234555666677778998888777643 1 233345555555444
No 328
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=65.90 E-value=28 Score=33.74 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=50.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+||=+|+ |..+..+++.++..+ -.+|+++|..+.-.+.++++. . +.+ +.
T Consensus 192 g~~VlV~G~--G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~~G-----------------------a-~~~--i~ 242 (371)
T cd08281 192 GQSVAVVGL--GGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARELG-----------------------A-TAT--VN 242 (371)
T ss_pred CCEEEEECC--CHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHHcC-----------------------C-ceE--eC
Confidence 456777786 455555444444343 126999998776555544321 1 000 11
Q ss_pred eeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 236 FSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 236 ~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
....+..+.+..+ ++.+|+|+ |+.- .. ..++.+++.|++||.++.-.
T Consensus 243 ~~~~~~~~~i~~~~~~g~d~vi-d~~G--~~--~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 243 AGDPNAVEQVRELTGGGVDYAF-EMAG--SV--PALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCchhHHHHHHHHhCCCCCEEE-ECCC--Ch--HHHHHHHHHHhcCCEEEEEc
Confidence 1111212222222 23578775 4331 11 46778888999999877543
No 329
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=65.23 E-value=50 Score=30.75 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=51.8
Q ss_pred CCCEEEEEc--CcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVG--SFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIG--t~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||=.| .+.|..++.+|++ . +.++++++..++..+.+++. |. +.+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~---~--G~~vi~~~~s~~~~~~l~~~-----------------------Ga-~~v- 192 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKI---K--GCKVIGCAGSDDKVAWLKEL-----------------------GF-DAV- 192 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHHc-----------------------CC-CEE-
Confidence 456777777 4556666667774 3 56788888766543333221 11 111
Q ss_pred ceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 233 PVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+.....+..+.+..+ +..+|+|+ |..- . ..++..++.|+++|.++.
T Consensus 193 -i~~~~~~~~~~v~~~~~~gvd~vl-d~~g---~--~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 193 -FNYKTVSLEEALKEAAPDGIDCYF-DNVG---G--EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred -EeCCCccHHHHHHHHCCCCcEEEE-ECCC---H--HHHHHHHHhhccCCEEEE
Confidence 111112222222222 34588776 5432 1 457888999999998874
No 330
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=65.16 E-value=40 Score=30.00 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=31.5
Q ss_pred CcE--eEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHH
Q 041517 250 VVG--DLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFA 305 (327)
Q Consensus 250 ~~f--DLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~ 305 (327)
..| |+|+||....... .+...+... -+++|++-.... ....++.++++.+-
T Consensus 145 ~~y~~D~IiiD~pp~~~~--~~~~~l~~~--aD~viiV~~~~~-~~~~~~~~~~~~l~ 197 (207)
T TIGR03018 145 RRYPDRIIIIDTPPLLVF--SEARALARL--VGQIVLVVEEGR-TTQEAVKEALSALE 197 (207)
T ss_pred hhCCCCEEEEECCCCcch--hHHHHHHHh--CCEEEEEEECCC-CCHHHHHHHHHHhc
Confidence 456 9999998764432 233333332 467777766665 44567777777664
No 331
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=65.06 E-value=76 Score=28.88 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=34.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCC
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGW 195 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~ 195 (327)
++-.++=-|-|.|.||..+..++|.++.+.+|..|=.-.+-
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~ 68 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGG 68 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecC
Confidence 45578888999999999999999999999999888765543
No 332
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.47 E-value=28 Score=34.20 Aligned_cols=100 Identities=19% Similarity=0.131 Sum_probs=63.2
Q ss_pred CCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..+||=+|+|. |.-|+..|++ ++ -.+|+.+|..+.-.++|+++..-.. .
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka---~G-A~~VVi~d~~~~Rle~Ak~~Ga~~~--------------------------~ 219 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKA---MG-ASDVVITDLVANRLELAKKFGATVT--------------------------D 219 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHH---cC-CCcEEEeecCHHHHHHHHHhCCeEE--------------------------e
Confidence 57899999973 6667777775 55 6889999999999998887431000 0
Q ss_pred Eeeecchhh----hhhh-cC-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALT----KLCE-WG-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~----~L~~-l~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.....+.+ .+.. ++ ..+|+.|--... ...++.+...++.||.+++-++..
T Consensus 220 ~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~-----~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 220 PSSHKSSPQELAELVEKALGKKQPDVTFDCSGA-----EVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred eccccccHHHHHHHHHhhccccCCCeEEEccCc-----hHHHHHHHHHhccCCEEEEeccCC
Confidence 000000111 1111 12 347777644332 246788888999999998888765
No 333
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=64.16 E-value=36 Score=32.42 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=24.4
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
..+|.+++|+.-. . ..++.+++.|++||.+++-.
T Consensus 227 ~~~d~~v~d~~G~--~--~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 227 LRFDQLILETAGV--P--QTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCCCeEEEECCCC--H--HHHHHHHHHhhcCCEEEEEc
Confidence 4578677776531 2 46788899999999888654
No 334
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=64.11 E-value=56 Score=32.71 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=29.8
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
....+++|+=||. |..++.+|..++.. +.+|+.++..+.
T Consensus 144 ~~~~~~~vvViGg--G~ig~E~A~~l~~~--g~~Vtli~~~~~ 182 (438)
T PRK13512 144 KANQVDKALVVGA--GYISLEVLENLYER--GLHPTLIHRSDK 182 (438)
T ss_pred hhcCCCEEEEECC--CHHHHHHHHHHHhC--CCcEEEEecccc
Confidence 3345789999996 89999999987654 568888887654
No 335
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=63.97 E-value=19 Score=35.94 Aligned_cols=117 Identities=12% Similarity=0.172 Sum_probs=70.7
Q ss_pred hccCCch-HHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEE-eCCCCChhhhhhhcccCccccchH
Q 041517 136 RIKGWGS-YGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCI-DDFRGWPGFRDKFKEIPMVNGNVL 213 (327)
Q Consensus 136 ~~~gw~~-~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~I-D~~~~~~~~A~~~~~~~~~~g~~~ 213 (327)
..+.|.. ...+|+.+........||=||=..|..|++++.. ++ +.+ |.+ .+++
T Consensus 24 ~l~awdaade~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~----~~----~~~~ds~-----~~~~------------ 78 (378)
T PRK15001 24 PLQAWEAADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEH----KP----YSIGDSY-----ISEL------------ 78 (378)
T ss_pred cccccccHHHHHHHHHhhcccCCCEEEEcCchhHHHHHHHhC----CC----CeeehHH-----HHHH------------
Confidence 4677833 3357777765433358999999999999999852 22 122 221 1111
Q ss_pred HHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 214 LYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 214 ~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
...+|+...++.+.. +.+. ++. ..+...+|+|.+---+.......-+..+.+.|.||+.|+.-.
T Consensus 79 ---~~~~n~~~n~~~~~~--~~~~--~~~---~~~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 79 ---ATRENLRLNGIDESS--VKFL--DST---ADYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred ---HHHHHHHHcCCCccc--ceee--ccc---ccccCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 123466665553321 2222 122 233456999999887766555556778888999999877533
No 336
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=62.82 E-value=53 Score=31.02 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=49.8
Q ss_pred CEEEEEcC--cchHHHHHHHHHhccCCCCc-EEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 157 RVIIEVGS--FLGASALHMANLTRQLGLDS-QILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 157 ~~VLEIGt--~~G~Sal~lA~a~r~l~~~~-~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+||=.|. +.|..++.+|++ + +. +|++++.+++..+.+++ . .|. +.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~---~--G~~~Vi~~~~s~~~~~~~~~-------------------~---lGa-~~v-- 205 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRL---L--GCSRVVGICGSDEKCQLLKS-------------------E---LGF-DAA-- 205 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHH---c--CCCEEEEEcCCHHHHHHHHH-------------------h---cCC-cEE--
Confidence 58888875 566666667774 3 44 79998876543332221 0 121 111
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+.....+..+.+..+ +..+|+|+ |+.- . ..++..++.|++||.++.
T Consensus 206 i~~~~~~~~~~i~~~~~~gvd~vi-d~~g--~---~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 206 INYKTDNVAERLRELCPEGVDVYF-DNVG--G---EISDTVISQMNENSHIIL 252 (345)
T ss_pred EECCCCCHHHHHHHHCCCCceEEE-ECCC--c---HHHHHHHHHhccCCEEEE
Confidence 111112222222222 34688876 5432 1 235778889999998775
No 337
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=62.69 E-value=95 Score=31.48 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=71.8
Q ss_pred hcCCCEEEEEcCcc--hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 153 KVRPRVIIEVGSFL--GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 153 ~~~p~~VLEIGt~~--G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
.+.|+.|+=||... |..+-.+.+.++..+-.++|+.|.+..+... |.
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~----------------------------G~--- 52 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEIL----------------------------GV--- 52 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccC----------------------------Cc---
Confidence 46799999999854 4334444444445565678988887533110 10
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh--HHHHHHHHHHHc
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRG--VRRAVNLFAKIN 308 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G--V~~Av~~f~~~~ 308 (327)
+ ....+.++++.+|+++|=... +.+...++++.+ ...++++++...+......| ..+.+.+.++++
T Consensus 53 ----~-----~~~sl~~lp~~~Dlavi~vp~--~~~~~~l~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~ 120 (447)
T TIGR02717 53 ----K-----AYPSVLEIPDPVDLAVIVVPA--KYVPQVVEECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKY 120 (447)
T ss_pred ----c-----ccCCHHHCCCCCCEEEEecCH--HHHHHHHHHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHc
Confidence 0 001123334568888876554 335577788777 56778888776665333233 457788888988
Q ss_pred CCeEE
Q 041517 309 GLKVQ 313 (327)
Q Consensus 309 gl~v~ 313 (327)
|+++.
T Consensus 121 girvl 125 (447)
T TIGR02717 121 GMRLL 125 (447)
T ss_pred CCEEE
Confidence 88755
No 338
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=62.35 E-value=15 Score=29.06 Aligned_cols=89 Identities=19% Similarity=0.066 Sum_probs=51.6
Q ss_pred CcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhh
Q 041517 164 SFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALT 243 (327)
Q Consensus 164 t~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~ 243 (327)
||.|..+..+++.++. .+.+++.+|.+++..+.+++ .+ +.+..|+..+
T Consensus 4 ~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~-----------------------~~-------~~~i~gd~~~ 51 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELRE-----------------------EG-------VEVIYGDATD 51 (116)
T ss_dssp ES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHH-----------------------TT-------SEEEES-TTS
T ss_pred EcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHh-----------------------cc-------cccccccchh
Confidence 3448899999998764 23489999998765443222 11 3344555443
Q ss_pred --hhhhcC-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 244 --KLCEWG-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 244 --~L~~l~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.|.+.+ ...|.|++..+-+ ..-..+-...+.+.|...|+..
T Consensus 52 ~~~l~~a~i~~a~~vv~~~~~d--~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 52 PEVLERAGIEKADAVVILTDDD--EENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp HHHHHHTTGGCESEEEEESSSH--HHHHHHHHHHHHHTTTSEEEEE
T ss_pred hhHHhhcCccccCEEEEccCCH--HHHHHHHHHHHHHCCCCeEEEE
Confidence 444433 5788888876642 1112334455666777666653
No 339
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=61.94 E-value=24 Score=30.82 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=30.6
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCC
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGW 195 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~ 195 (327)
.+..++|.=||+ |..+..+|+.++.+ +.+|+++|.+...
T Consensus 33 ~l~g~tvgIiG~--G~IG~~vA~~l~~f--G~~V~~~d~~~~~ 71 (178)
T PF02826_consen 33 ELRGKTVGIIGY--GRIGRAVARRLKAF--GMRVIGYDRSPKP 71 (178)
T ss_dssp -STTSEEEEEST--SHHHHHHHHHHHHT--T-EEEEEESSCHH
T ss_pred ccCCCEEEEEEE--cCCcCeEeeeeecC--CceeEEecccCCh
Confidence 456789999999 88888888887755 6799999998753
No 340
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=60.81 E-value=55 Score=32.60 Aligned_cols=124 Identities=13% Similarity=0.065 Sum_probs=62.1
Q ss_pred EEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeee
Q 041517 159 IIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSS 238 (327)
Q Consensus 159 VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~ 238 (327)
|-=||. |+.++.+|..+. .+.+|+++|.+++-.+...+-.. . ..++ .++.+...+ ..+ +....
T Consensus 3 I~VIGl--GyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~--~-~~e~-----~l~~~l~~~-~~~---l~~t~ 65 (388)
T PRK15057 3 ITISGT--GYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRIS--P-IVDK-----EIQQFLQSD-KIH---FNATL 65 (388)
T ss_pred EEEECC--CHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCC--C-CCCc-----CHHHHHHhC-CCc---EEEec
Confidence 444555 888888886643 26889999999876554333111 0 0011 111111111 011 22221
Q ss_pred cchhhhhhhcCCcEeEEEEcCCCC---------CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 239 GSALTKLCEWGVVGDLIEIDAGHD---------FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 239 gda~~~L~~l~~~fDLIfIDa~h~---------~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
+..+.. ...|+|++-..-+ ...+...++.+.+ +++|.++|.--... ||..+.+.....+.+
T Consensus 66 -~~~~~~----~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~----pgtt~~l~~~~~~~~ 135 (388)
T PRK15057 66 -DKNEAY----RDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP----VGFTAAMHKKYRTEN 135 (388)
T ss_pred -chhhhh----cCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC----CchHHHHHHHhhcCc
Confidence 111211 2357887643321 1234445566666 68888777665554 676666665544433
No 341
>PRK13699 putative methylase; Provisional
Probab=60.17 E-value=14 Score=33.99 Aligned_cols=51 Identities=8% Similarity=0.124 Sum_probs=39.6
Q ss_pred HHHHHHHhh--cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDK--VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~--~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+++.+++. .+...|||-=||+|.+++...+. +.+.+++|++++..+.+.+
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYHRAGQQ 203 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHHHHHHH
Confidence 466776653 24678999999999887776653 7899999999988877755
No 342
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=60.13 E-value=72 Score=29.93 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=50.8
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||=.|. +.|..++.+|+. . +.++++++.+++-.+.+++. |. +.+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~---~--G~~Vi~~~~s~~~~~~~~~l-----------------------Ga-~~v- 187 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKL---K--GCKVVGAAGSDEKVAYLKKL-----------------------GF-DVA- 187 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHHc-----------------------CC-CEE-
Confidence 4567887774 456666666664 3 56788887765433333221 11 111
Q ss_pred ceEeeec-chhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 233 PVPFSSG-SALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 233 ~V~~~~g-da~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..... +..+.+... ++.+|+|+ |+.- . ..++..++.|++||.++.
T Consensus 188 -i~~~~~~~~~~~~~~~~~~gvdvv~-d~~G---~--~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 188 -FNYKTVKSLEETLKKASPDGYDCYF-DNVG---G--EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred -EeccccccHHHHHHHhCCCCeEEEE-ECCC---H--HHHHHHHHHhCcCcEEEE
Confidence 111111 111222222 34689886 5432 1 346888999999998875
No 343
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=59.86 E-value=31 Score=32.81 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=25.6
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChh
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPG 197 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~ 197 (327)
.+|.=||+ |..+..+|..++..+...+|+++|.++...+
T Consensus 7 ~~I~IIG~--G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~ 45 (307)
T PRK07502 7 DRVALIGI--GLIGSSLARAIRRLGLAGEIVGADRSAETRA 45 (307)
T ss_pred cEEEEEee--CHHHHHHHHHHHhcCCCcEEEEEECCHHHHH
Confidence 46888887 5555566665544443358999999775443
No 344
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.08 E-value=21 Score=33.60 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=59.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhcc-CCCC----cEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQ-LGLD----SQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~-l~~~----~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
.++++++...-|.=+-.+++-+-. +... .+|++||+-+-.+ +- | +. .+.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-I~----------G-----------V~--qlq-- 95 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-IE----------G-----------VI--QLQ-- 95 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-cC----------c-----------eE--Eee--
Confidence 578999988888888877775321 1112 2499999954221 10 0 00 000
Q ss_pred ccceEeeecchhh-hhhhcC-CcEeEEEEcCCCCC------Cc------HHHHHHHHHccCCCCeEEEEE
Q 041517 231 VLPVPFSSGSALT-KLCEWG-VVGDLIEIDAGHDF------NS------AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 231 v~~V~~~~gda~~-~L~~l~-~~fDLIfIDa~h~~------~~------v~~dl~~~~~lL~pGGvIi~d 286 (327)
-.+.+...++ .+..++ ++.|+|+.||..+. .+ .+..|.....+|+|||-.+..
T Consensus 96 ---~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 96 ---GDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred ---cccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 1122233333 344454 69999999987432 22 234566777899999988763
No 345
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=58.35 E-value=72 Score=34.44 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=35.9
Q ss_pred cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 248 WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 248 l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
+...||+|+||+..-..- .|...+.+ .-+|+|++-.+.. .....+.++++.+. ..+..+
T Consensus 637 l~~~yD~IIIDtPP~~~~--~Da~~la~--~ad~~llVvr~~~-t~~~~~~~~~~~l~-~~~~~~ 695 (726)
T PRK09841 637 ANDHYDLVIVDTPPMLAV--SDAAVVGR--SVGTSLLVARFGL-NTAKEVSLSMQRLE-QAGVNI 695 (726)
T ss_pred HHhcCCEEEEeCCCcccc--chHHHHHH--hCCeEEEEEeCCC-CCHHHHHHHHHHHH-hCCCce
Confidence 346899999998753322 23333333 2367777766655 33456888888884 455544
No 346
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=58.31 E-value=1.9e+02 Score=29.34 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=66.0
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
...+-.|+..+.++..++. ++++-+|+.+|++=.-.. .++..+|....++++..
T Consensus 95 eVlVT~GA~~ai~~~~~~l----~~~GDeVii~eP~fd~Y~----------------------~~~~maG~tpv~v~~~~ 148 (420)
T KOG0257|consen 95 EVLVTAGANEAISSALLGL----LNPGDEVIVFEPFFDCYI----------------------PQVVMAGGTPVFVPLKP 148 (420)
T ss_pred cEEEecCchHHHHHHHHHH----cCCCCEEEEecCcchhhh----------------------hHHhhcCCcceeecccc
Confidence 4688999999999888887 588999999999643221 12223333222222221
Q ss_pred eec---------chhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 237 SSG---------SALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 237 ~~g---------da~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
..| |..+.=....++-++|++..-|-- --.++.|+.+.++.+..|+||+.|=
T Consensus 149 ~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDe 212 (420)
T KOG0257|consen 149 KEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDE 212 (420)
T ss_pred ccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhh
Confidence 111 111110123477899999877621 1146889999999999987777663
No 347
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=58.14 E-value=42 Score=34.57 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=25.7
Q ss_pred cEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 251 VGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 251 ~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..|+|.+=..-.. . ....+...+.|+||..+.+.-.+.
T Consensus 97 ~ADvVviLlPDt~-q-~~v~~~i~p~LK~Ga~L~fsHGFn 134 (487)
T PRK05225 97 QADLVINLTPDKQ-H-SDVVRAVQPLMKQGAALGYSHGFN 134 (487)
T ss_pred hCCEEEEcCChHH-H-HHHHHHHHhhCCCCCEEEecCCce
Confidence 4688887544332 2 233489999999999888765543
No 348
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=57.10 E-value=78 Score=34.12 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=34.6
Q ss_pred hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 245 LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 245 L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
+..+...||+|+||+...... .+...+.. .-.++|++..+.. .....+.++++.+..
T Consensus 649 l~~l~~~yD~IiID~pp~~~~--~d~~~l~~--~~D~vl~v~~~~~-~~~~~~~~~~~~l~~ 705 (754)
T TIGR01005 649 VIHARLYSDCVVVDVGTADPV--RDMRAAAR--LAIIMLLVTAYDR-VVVECGRADAQGISR 705 (754)
T ss_pred HHHHHhhCCEEEEcCCCcchh--HHHHHhhh--hCCeEEEEEEeCc-eeHHHHHHHHHHHHh
Confidence 344457899999998764322 23333222 2456666666655 345668888888764
No 349
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=56.77 E-value=1.7e+02 Score=28.25 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeC
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD 191 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~ 191 (327)
.+|=+.+.+..+.+.++=+.+ |.+|+.+|....+++++.+|+.=-.
T Consensus 28 ~~fE~~~a~~~g~~~~~~~~s--gt~Al~~al~~l~~~~gdeVi~p~~ 73 (363)
T PF01041_consen 28 EEFEKEFAEYFGVKYAVAVSS--GTSALHLALRALGLGPGDEVIVPAY 73 (363)
T ss_dssp HHHHHHHHHHHTSSEEEEESS--HHHHHHHHHHHTTGGTTSEEEEESS
T ss_pred HHHHHHHHHHhCCCeEEEeCC--hhHHHHHHHHhcCCCcCceEecCCC
Confidence 345556677778888887766 7777777766545556666665443
No 350
>PLN02494 adenosylhomocysteinase
Probab=56.44 E-value=91 Score=32.22 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=32.6
Q ss_pred HHHHHHhh----cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCC
Q 041517 146 VFGNLIDK----VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGW 195 (327)
Q Consensus 146 lL~~L~~~----~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~ 195 (327)
++..+.+. +..++|+=+|+ |..+..+|+.++.+ +.+|+.+|.++.-
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGy--G~IGr~vA~~aka~--Ga~VIV~e~dp~r 289 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGY--GDVGKGCAAAMKAA--GARVIVTEIDPIC 289 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECC--CHHHHHHHHHHHHC--CCEEEEEeCCchh
Confidence 45555554 34689999999 56777777776655 5689999997753
No 351
>PTZ00357 methyltransferase; Provisional
Probab=56.38 E-value=36 Score=36.97 Aligned_cols=109 Identities=13% Similarity=0.042 Sum_probs=62.8
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
.|+-+|.|.|-.--...++++..+..-+|++||-++....+......+..... +... -..++ |.++
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~----------n~~~-~~G~~---VtII 768 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWT----------QLAY-TFGHT---LEVI 768 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccc----------cccc-cCCCe---EEEE
Confidence 58999999998866666666667778899999999765433322110000000 1000 00122 6666
Q ss_pred ecchhhhh----------hhcCCcEeEEEEc-----CCCCCCcHHHHHHHHHccCCC----CeE
Q 041517 238 SGSALTKL----------CEWGVVGDLIEID-----AGHDFNSAWADINRAWRILRP----GGV 282 (327)
Q Consensus 238 ~gda~~~L----------~~l~~~fDLIfID-----a~h~~~~v~~dl~~~~~lL~p----GGv 282 (327)
..|..+.- +..-+++|+|+.. ||.+--+ +.|+-+.+.||+ +|+
T Consensus 769 ~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNELSP--ECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 769 VADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNELSP--ECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred eCcccccccccccccccccccccccceehHhhhcccccccCCH--HHHHHHHHhhhhhcccccc
Confidence 66654421 1111479999854 3443333 678888888876 665
No 352
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=56.16 E-value=39 Score=32.32 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=26.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
...+||=+|+ |..+..+++.++.. +.+++++|.++...+.+++
T Consensus 166 ~g~~VlV~G~--G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 166 KGDLVIVIGA--GGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 3578998998 44444444443334 4579999987765554443
No 353
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=56.15 E-value=40 Score=31.80 Aligned_cols=32 Identities=28% Similarity=0.150 Sum_probs=21.8
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+|+|| |+.- .. ..++.+++.|++||.|++-
T Consensus 199 ~g~Dvvi-d~~G--~~--~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 199 RDYRAIY-DASG--DP--SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CCCCEEE-ECCC--CH--HHHHHHHHhhhcCcEEEEE
Confidence 3578766 4432 11 4578889999999988853
No 354
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=55.91 E-value=20 Score=34.45 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=50.6
Q ss_pred eEeeecchhhhhhh---cCCcEeEEEEcCCCCCCcHHHHHH-HHHccCCCCeEEEEEcC--CCCC---CchhHHHHHHHH
Q 041517 234 VPFSSGSALTKLCE---WGVVGDLIEIDAGHDFNSAWADIN-RAWRILRPGGVIFGHDY--FTAA---DNRGVRRAVNLF 304 (327)
Q Consensus 234 V~~~~gda~~~L~~---l~~~fDLIfIDa~h~~~~v~~dl~-~~~~lL~pGGvIi~dD~--~~~~---~~~GV~~Av~~f 304 (327)
|.|...++.+.|+. +.+.||+||+-.... ..|. .+.+.++|||+||+... ..+- ...+-..-+.++
T Consensus 202 VhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~v-----h~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eL 276 (289)
T PF14740_consen 202 VHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMV-----HFLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKEL 276 (289)
T ss_pred EEEeCchHHHHHhhHHhhcCCCCEEEEhhhhH-----hhcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHH
Confidence 77777777777744 468999999976531 2222 47778999999999884 2222 223455566688
Q ss_pred HHHcCCeEE
Q 041517 305 AKINGLKVQ 313 (327)
Q Consensus 305 ~~~~gl~v~ 313 (327)
++..|++-.
T Consensus 277 A~~aG~~p~ 285 (289)
T PF14740_consen 277 AKAAGFKPV 285 (289)
T ss_pred HHHCCCccc
Confidence 888887643
No 355
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=55.58 E-value=1.3e+02 Score=29.67 Aligned_cols=96 Identities=9% Similarity=0.026 Sum_probs=56.0
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
.++.++|.=||. |..+..+|+.++.. +.+|+..|......+.++. .|.
T Consensus 13 ~LkgKtVGIIG~--GsIG~amA~nL~d~--G~~ViV~~r~~~s~~~A~~-----------------------~G~----- 60 (335)
T PRK13403 13 LLQGKTVAVIGY--GSQGHAQAQNLRDS--GVEVVVGVRPGKSFEVAKA-----------------------DGF----- 60 (335)
T ss_pred hhCcCEEEEEeE--cHHHHHHHHHHHHC--cCEEEEEECcchhhHHHHH-----------------------cCC-----
Confidence 446788999998 88888888877643 6788888743221111111 121
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHH-HHHHccCCCCeEEEEEcCCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADI-NRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl-~~~~~lL~pGGvIi~dD~~~ 290 (327)
.. .+..+.+ ...|+|++=...+ ....-+ +..++.|+||.+++|.--+.
T Consensus 61 --~v--~sl~Eaa----k~ADVV~llLPd~--~t~~V~~~eil~~MK~GaiL~f~hgfn 109 (335)
T PRK13403 61 --EV--MSVSEAV----RTAQVVQMLLPDE--QQAHVYKAEVEENLREGQMLLFSHGFN 109 (335)
T ss_pred --EE--CCHHHHH----hcCCEEEEeCCCh--HHHHHHHHHHHhcCCCCCEEEECCCcc
Confidence 11 1222322 2358888754431 222333 57899999999888765544
No 356
>PLN02827 Alcohol dehydrogenase-like
Probab=55.54 E-value=65 Score=31.45 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+||=+|+ |..+..+++.++.++ -.+++++|..++-.+.+++. |. +.+ +
T Consensus 193 ~g~~VlV~G~--G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~l-----------------------Ga-~~~--i 243 (378)
T PLN02827 193 KGSSVVIFGL--GTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKTF-----------------------GV-TDF--I 243 (378)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHc-----------------------CC-cEE--E
Confidence 4568888886 555555555444444 23688898766544444331 11 111 1
Q ss_pred Eeee--cchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC-eEEEE
Q 041517 235 PFSS--GSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPG-GVIFG 285 (327)
Q Consensus 235 ~~~~--gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG-GvIi~ 285 (327)
.... .+..+.+.++ +..+|+|+--... . ..+..+++.+++| |.+++
T Consensus 244 ~~~~~~~~~~~~v~~~~~~g~d~vid~~G~---~--~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 244 NPNDLSEPIQQVIKRMTGGGADYSFECVGD---T--GIATTALQSCSDGWGLTVT 293 (378)
T ss_pred cccccchHHHHHHHHHhCCCCCEEEECCCC---h--HHHHHHHHhhccCCCEEEE
Confidence 1111 1122222222 2358877633332 1 3577888899998 98875
No 357
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=55.49 E-value=14 Score=36.00 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCCEEEEEcCcchHHHH-HHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFLGASAL-HMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal-~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
....|+|+=.|-||+|+ .+..+ + -..|+|+|.++...+--++..+ ..+..++
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a----g-Ak~V~A~EwNp~svEaLrR~~~-------------------~N~V~~r--- 246 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA----G-AKTVFACEWNPWSVEALRRNAE-------------------ANNVMDR--- 246 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc----C-ccEEEEEecCHHHHHHHHHHHH-------------------hcchHHH---
Confidence 34789999999999999 55553 2 5789999999987765454322 1111111
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCC-Ce-EEEEEcCCCCCC-----chhHHHHHHHHHH
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRP-GG-VIFGHDYFTAAD-----NRGVRRAVNLFAK 306 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~p-GG-vIi~dD~~~~~~-----~~GV~~Av~~f~~ 306 (327)
.....|+... +......|-|.+.--.+.+ +.+-.+.+.|+| || +|=+|.-..+.+ -.||.+-..+.+.
T Consensus 247 ~~i~~gd~R~--~~~~~~AdrVnLGLlPSse---~~W~~A~k~Lk~eggsilHIHenV~~s~~~~~~a~~v~kt~~~~~~ 321 (351)
T KOG1227|consen 247 CRITEGDNRN--PKPRLRADRVNLGLLPSSE---QGWPTAIKALKPEGGSILHIHENVKDSDIKIVEADGVNKTIKDIAN 321 (351)
T ss_pred HHhhhccccc--cCccccchheeeccccccc---cchHHHHHHhhhcCCcEEEEeccccccccccccccchhhHHHHHHh
Confidence 1222333222 2223455666554332222 445667777887 44 777877665322 2368887777776
Q ss_pred HcC
Q 041517 307 ING 309 (327)
Q Consensus 307 ~~g 309 (327)
..+
T Consensus 322 k~~ 324 (351)
T KOG1227|consen 322 KGV 324 (351)
T ss_pred ccC
Confidence 543
No 358
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=54.94 E-value=85 Score=29.70 Aligned_cols=95 Identities=9% Similarity=0.017 Sum_probs=50.7
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+||=.|. +.|..++.+|+. . +.++++++.+++..+.+++. + |. +.+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~---~--G~~Vi~~~~~~~~~~~~~~~-------------------l---Ga-~~v- 201 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKL---K--GCYVVGSAGSDEKVDLLKNK-------------------L---GF-DDA- 201 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHHh-------------------c---CC-cee-
Confidence 4568888885 455555666664 3 56788887665433332220 1 11 111
Q ss_pred ceEeeec-chhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 233 PVPFSSG-SALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 233 ~V~~~~g-da~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..... +..+.+... +..+|+|+ |..- . ..++..++.|++||.++.
T Consensus 202 -i~~~~~~~~~~~i~~~~~~gvd~v~-d~~g---~--~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 202 -FNYKEEPDLDAALKRYFPNGIDIYF-DNVG---G--KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred -EEcCCcccHHHHHHHhCCCCcEEEE-ECCC---H--HHHHHHHHHhccCcEEEE
Confidence 221111 222222221 34688886 5432 1 467888999999998874
No 359
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=54.73 E-value=1.4e+02 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=21.2
Q ss_pred cEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 251 VGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 251 ~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+|+|+ |+.- .. ..++..++.|++||.++.-
T Consensus 247 ~~D~vi-d~~g--~~--~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 247 TMDYII-DTVS--AV--HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCCEEE-ECCC--CH--HHHHHHHHHhcCCcEEEEe
Confidence 478776 5432 11 4677888999999987753
No 360
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=54.24 E-value=1.1e+02 Score=27.47 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=31.0
Q ss_pred hccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 136 RIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 136 ~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
++.-|+..++ +.++..+|+=+|||. .+..+++.+-..| =++++.+|.+.
T Consensus 7 qi~l~G~e~Q------~~L~~s~VlIiG~gg--lG~evak~La~~G-Vg~i~lvD~d~ 55 (197)
T cd01492 7 QIRLWGLEAQ------KRLRSARILLIGLKG--LGAEIAKNLVLSG-IGSLTILDDRT 55 (197)
T ss_pred HHHHhCHHHH------HHHHhCcEEEEcCCH--HHHHHHHHHHHcC-CCEEEEEECCc
Confidence 3445765543 234567899999954 4445555443345 57899999976
No 361
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=54.15 E-value=1.3e+02 Score=30.32 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=27.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
...++|+=+|+ |..+..+|+.++.+ +.+|+.+|.++.
T Consensus 193 l~Gk~VvViG~--G~IG~~vA~~ak~~--Ga~ViV~d~dp~ 229 (406)
T TIGR00936 193 IAGKTVVVAGY--GWCGKGIAMRARGM--GARVIVTEVDPI 229 (406)
T ss_pred CCcCEEEEECC--CHHHHHHHHHHhhC--cCEEEEEeCChh
Confidence 35789999999 55666666666544 568999998774
No 362
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=53.96 E-value=27 Score=32.52 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHhccCCCCcEEEEEeCCCCCh
Q 041517 165 FLGASALHMANLTRQLGLDSQILCIDDFRGWP 196 (327)
Q Consensus 165 ~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~ 196 (327)
|.|.+|..++-+..-...+.+|..||.++.-+
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 34566555544322223489999999999644
No 363
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=53.74 E-value=55 Score=30.92 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcE-EEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQ-ILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~-V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||=+|+ |..+..+++.++.++ .+ |+++|..+.-.+.+++. |. +.+
T Consensus 163 ~g~~vlV~G~--G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~-----------------------ga-~~~-- 212 (339)
T cd08239 163 GRDTVLVVGA--GPVGLGALMLARALG--AEDVIGVDPSPERLELAKAL-----------------------GA-DFV-- 212 (339)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-----------------------CC-CEE--
Confidence 3567887876 566666555555454 44 89998866544333321 11 111
Q ss_pred eEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.....+ .+.+..+ +..+|+|+--... . ..++.+++.|++||.+++-
T Consensus 213 i~~~~~~-~~~~~~~~~~~~~d~vid~~g~---~--~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 213 INSGQDD-VQEIRELTSGAGADVAIECSGN---T--AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred EcCCcch-HHHHHHHhCCCCCCEEEECCCC---H--HHHHHHHHHhhcCCEEEEE
Confidence 1111111 2222222 2368877632221 1 3457778889999988753
No 364
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=52.93 E-value=49 Score=31.70 Aligned_cols=33 Identities=27% Similarity=0.165 Sum_probs=22.6
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
..+|+||-=... + ..++.+++.|++||.++.-.
T Consensus 237 ~~~d~vid~~g~---~--~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 237 GEFDLIIEATGV---P--PLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CCCCEEEECcCC---H--HHHHHHHHHccCCcEEEEEe
Confidence 458876643332 1 36788899999999887643
No 365
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=52.50 E-value=96 Score=27.73 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=33.5
Q ss_pred CcEeEEEEcCC--CCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 041517 250 VVGDLIEIDAG--HDF-NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 250 ~~fDLIfIDa~--h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl 310 (327)
..+|+|+||.. ..+ ......++.+.+.+.|-=++++-+-... ...+. .+..|.+..++
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~--~~~~~-~~~~~~~~~~~ 142 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG--QEDLE-QALAFYEAFGI 142 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG--GHHHH-HHHHHHHHSST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC--hHHHH-HHHHHhhcccC
Confidence 56999999943 222 3345677788888878766666555542 12233 44444444443
No 366
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.34 E-value=1.1e+02 Score=28.05 Aligned_cols=93 Identities=22% Similarity=0.251 Sum_probs=51.4
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
....||=.|. ..|..++.+|+. . +.+|+++...++..+.+++ .|. +.+
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~---~--g~~v~~~~~~~~~~~~~~~-----------------------~g~-~~~- 191 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKA---L--GATVTATTRSPERAALLKE-----------------------LGA-DEV- 191 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHh-----------------------cCC-cEE-
Confidence 4568887775 566777777774 3 5678888776543332221 111 110
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+. ...+..+.+..++..+|+|+ |..- . ..++..++.|+++|.++.
T Consensus 192 -~~-~~~~~~~~i~~~~~~~d~vl-~~~~---~--~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 192 -VI-DDGAIAEQLRAAPGGFDKVL-ELVG---T--ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred -Ee-cCccHHHHHHHhCCCceEEE-ECCC---h--HHHHHHHHHhccCCEEEE
Confidence 10 11122222222245688887 4322 1 356778889999998775
No 367
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=51.84 E-value=49 Score=28.93 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH---HHHcCCeEEEcc
Q 041517 264 NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF---AKINGLKVQIDG 316 (327)
Q Consensus 264 ~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f---~~~~gl~v~~~g 316 (327)
..+...++.+...+++|.||++||-.. .+...+++..+ .+..|+++....
T Consensus 136 ~~~~~i~~~~~~~~~~g~Iil~Hd~~~---~~~t~~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 136 PGVESIVDRVVKNTKPGDIILLHASDS---AKQTVKALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeCCCC---cHhHHHHHHHHHHHHHHCCCEEEEHH
Confidence 344566778889999999999997322 23333444433 356788876543
No 368
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=51.38 E-value=30 Score=34.10 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=35.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCC
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGW 195 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~ 195 (327)
.+.-.++-.|.|+|..---+.+.++..+++.+|+++|+.+..
T Consensus 210 ~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~ 251 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESI 251 (362)
T ss_pred cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcce
Confidence 445678888999999888888988889999999999998753
No 369
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=51.16 E-value=90 Score=29.47 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=21.2
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
..+|+|+ |+.- . ...++.+++.|+++|.++.
T Consensus 234 ~~~d~vl-d~~g--~--~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 234 RGVDVVI-EAVG--I--PATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCCEEE-ECCC--C--HHHHHHHHHhccCCcEEEE
Confidence 4688776 5431 1 1457888899999998874
No 370
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=50.99 E-value=1.3e+02 Score=27.22 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=25.4
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
.++..+|+=+|||. .+..+|..+-..| -++++.+|.+.
T Consensus 18 ~L~~~~VlivG~Gg--lGs~va~~La~~G-vg~i~lvD~D~ 55 (228)
T cd00757 18 KLKNARVLVVGAGG--LGSPAAEYLAAAG-VGKLGLVDDDV 55 (228)
T ss_pred HHhCCcEEEECCCH--HHHHHHHHHHHcC-CCEEEEEcCCE
Confidence 34567999999954 3334444333455 57999999976
No 371
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=50.85 E-value=82 Score=29.09 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=22.3
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
..+|+|+--... + ..++.+++.|++||.++.--
T Consensus 186 ~g~d~vid~~G~---~--~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 186 RGVDVALEFSGA---T--AAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCCEEEECCCC---h--HHHHHHHHHhcCCCEEEEec
Confidence 358887532222 1 46788899999999887644
No 372
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=50.47 E-value=1.6e+02 Score=26.97 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=30.8
Q ss_pred CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC--eEEEEEcCCC
Q 041517 249 GVVGDLIEIDAGHDFNSAWADINRAWRILRPG--GVIFGHDYFT 290 (327)
Q Consensus 249 ~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG--GvIi~dD~~~ 290 (327)
.+.| +|.+|||.+.++ .++-++.++.+.| -++...-|..
T Consensus 88 ~g~f-iviMDaDlsHhP--k~ipe~i~lq~~~~~div~GTRYa~ 128 (238)
T KOG2978|consen 88 TGDF-IVIMDADLSHHP--KFIPEFIRLQKEGNYDIVLGTRYAG 128 (238)
T ss_pred cCCe-EEEEeCccCCCc--hhHHHHHHHhhccCcceeeeeeEcC
Confidence 3667 778999998888 8999999999999 4666665544
No 373
>PLN02740 Alcohol dehydrogenase-like
Probab=49.60 E-value=1.2e+02 Score=29.57 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=28.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
...+||=+|+ |..+..+++.++.++ -.+|+++|..+.-.+.+++
T Consensus 198 ~g~~VlV~G~--G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 198 AGSSVAIFGL--GAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH
Confidence 3568888886 556555555554443 2369999998766555544
No 374
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=49.17 E-value=54 Score=32.39 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=26.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
..+.+|+=||+ |..+...++.++.++ .+|+.+|.++.
T Consensus 165 l~~~~VlViGa--G~vG~~aa~~a~~lG--a~V~v~d~~~~ 201 (370)
T TIGR00518 165 VEPGDVTIIGG--GVVGTNAAKMANGLG--ATVTILDINID 201 (370)
T ss_pred CCCceEEEEcC--CHHHHHHHHHHHHCC--CeEEEEECCHH
Confidence 35678999988 556666666555554 57999998754
No 375
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=48.88 E-value=76 Score=30.30 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=28.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
.+++|+=||. |..+..++..+++++ .+|+.+|.++.
T Consensus 151 ~g~kvlViG~--G~iG~~~a~~L~~~G--a~V~v~~r~~~ 186 (296)
T PRK08306 151 HGSNVLVLGF--GRTGMTLARTLKALG--ANVTVGARKSA 186 (296)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCC--CEEEEEECCHH
Confidence 4789999998 667777777776654 69999999754
No 376
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=48.64 E-value=1.2e+02 Score=30.88 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=28.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCC
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGW 195 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~ 195 (327)
..++|+=+|+ |..+..+|..++.+ +.+|+.+|.++.-
T Consensus 211 ~Gk~VlViG~--G~IG~~vA~~lr~~--Ga~ViV~d~dp~r 247 (425)
T PRK05476 211 AGKVVVVAGY--GDVGKGCAQRLRGL--GARVIVTEVDPIC 247 (425)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEcCCchh
Confidence 5789999998 56777777776655 4589999997753
No 377
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=48.55 E-value=94 Score=31.39 Aligned_cols=136 Identities=14% Similarity=0.058 Sum_probs=82.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.....+++|+|-|......|..+ ...+=+++++...-.+.+....+ . |..-+..+|.. ...+
T Consensus 192 ~~D~F~DLGSGVGqlv~~~aa~a----~~k~svG~eim~~pS~~a~~~~~---------~---~kk~~k~fGk~--~~~~ 253 (419)
T KOG3924|consen 192 PADVFMDLGSGVGQLVCFVAAYA----GCKKSVGFEIMDKPSQCAELNKE---------E---FKKLMKHFGKK--PNKI 253 (419)
T ss_pred CCCcccCCCcccchhhHHHHHhh----ccccccceeeecCcHHHHHHHHH---------H---HHHHHHHhCCC--cCce
Confidence 35678999999999988887753 35566788887765555433211 1 11122233432 3347
Q ss_pred Eeeecchhh--hhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC-CCchh-HHHHHHHHHHHc
Q 041517 235 PFSSGSALT--KLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA-ADNRG-VRRAVNLFAKIN 308 (327)
Q Consensus 235 ~~~~gda~~--~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~-~~~~G-V~~Av~~f~~~~ 308 (327)
+..+|+..+ ....+....++||+.--.-.++-.--+++.+..+++|..||--.-... +.-+. -...+++|....
T Consensus 254 ~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~r~rs~es~~~~~~df~~it 331 (419)
T KOG3924|consen 254 ETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLVPRPRSQESTSRRVSDFVAIT 331 (419)
T ss_pred eecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccccccccchhHHHHHHHHHHhhc
Confidence 777776544 223334678899987443233333446789999999999998766652 22222 345566666543
No 378
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=48.40 E-value=29 Score=31.52 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=37.5
Q ss_pred EeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC-CCC-CCchhHHHHHHHHHH
Q 041517 252 GDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY-FTA-ADNRGVRRAVNLFAK 306 (327)
Q Consensus 252 fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~-~~~-~~~~GV~~Av~~f~~ 306 (327)
|-+||.-+.-......+.++.+.+.|..||.|++||. ..+ .-...+++......-
T Consensus 54 yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~~~~~~~~~~~~r~~~~~v~p 110 (207)
T PF13709_consen 54 YPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDRDCGSAGFDASFRRLMKRVFP 110 (207)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECCCcccccccHHHHHHHHHhcC
Confidence 5677766554444455889999999999999999999 332 223346666665554
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=47.56 E-value=2.5e+02 Score=26.47 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=32.6
Q ss_pred CcEeEEEEcCCCCC---CcHHHHHHHHHccCC------CCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 250 VVGDLIEIDAGHDF---NSAWADINRAWRILR------PGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 250 ~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~------pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
..+|+|+||..-.. ......++.+.+... |.+++++-|... ....+.++ ..|.+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~-~~f~~ 215 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQA-KVFNE 215 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHH-HHHHh
Confidence 56999999965322 233445666666666 888888777754 22345444 44444
No 380
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=47.40 E-value=1e+02 Score=28.96 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=21.0
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
..+|+|+ |+.- .. ..+...++.|+++|.++.
T Consensus 235 ~~~d~vl-d~~g--~~--~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 235 RGVDCVI-EAVG--FE--ETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CCCcEEE-EccC--CH--HHHHHHHHHhhcCCEEEE
Confidence 4688876 4321 11 467788889999998774
No 381
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=47.34 E-value=1.9e+02 Score=29.48 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=28.6
Q ss_pred CcEeEEEEcCC--CCC-CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 250 VVGDLIEIDAG--HDF-NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 250 ~~fDLIfIDa~--h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+|+|+||.. +.. ......+........|.=++++-|-..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc
Confidence 46999999954 322 335566777777888887777777654
No 382
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.31 E-value=1.8e+02 Score=29.66 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=29.0
Q ss_pred cEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHH
Q 041517 251 VGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFA 305 (327)
Q Consensus 251 ~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~ 305 (327)
.+|+|+||..-.. ......+..+.....|.-++++-|... ......+.++.|.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt--k~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM--KSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc--ChHHHHHHHHHhc
Confidence 5899999954222 223445555566666776655544322 1234455555553
No 383
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.27 E-value=91 Score=30.79 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=31.5
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
+..+...|.-+|.|. -.+..++.+|..+ -.++++||++++--+.|+++
T Consensus 189 kv~~GstvAVfGLG~--VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGG--VGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred ccCCCCEEEEEecch--HHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc
Confidence 344467888898854 3333344333344 68999999998876666654
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.16 E-value=3.5e+02 Score=28.59 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=21.7
Q ss_pred CCEEEEEc-CcchHHHHH--HHHHhccCCCCcEEEEEeCCC
Q 041517 156 PRVIIEVG-SFLGASALH--MANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 156 p~~VLEIG-t~~G~Sal~--lA~a~r~l~~~~~V~~ID~~~ 193 (327)
.+.|+=+| +|.|.+++. |+..+.....+.+|..++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 45777778 899999886 333221111134565555544
No 385
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=47.06 E-value=44 Score=32.31 Aligned_cols=36 Identities=14% Similarity=-0.063 Sum_probs=29.7
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
..+=++||+|.+..-++..++..+++.+|++||+..
T Consensus 186 d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 186 DSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 456677788888888888888788899999999954
No 386
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=46.86 E-value=41 Score=32.96 Aligned_cols=54 Identities=20% Similarity=0.105 Sum_probs=43.3
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHH
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKI 307 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~ 307 (327)
..+|+|++=..+.......-|..+...|+|||.|++.--.. .|++.+.+.+..-
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~----~g~~s~~k~~~~~ 128 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENR----SGVRSAEKMLADY 128 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEecc----ccHHHHHHHHHHh
Confidence 47999999888766666677899999999999999876665 5888887777654
No 387
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=46.34 E-value=40 Score=27.98 Aligned_cols=38 Identities=13% Similarity=0.013 Sum_probs=27.0
Q ss_pred CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEE-EEcC
Q 041517 249 GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIF-GHDY 288 (327)
Q Consensus 249 ~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi-~dD~ 288 (327)
..++|+||+=. + .......++.+.+++.+++.|+ +.|.
T Consensus 65 ~~~~D~viv~v-K-a~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 65 AGPYDLVIVAV-K-AYQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp HSTESEEEE-S-S-GGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred cCCCcEEEEEe-c-ccchHHHHHHHhhccCCCcEEEEEeCC
Confidence 36899999964 3 2445678899999999996555 4444
No 388
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=45.85 E-value=1.1e+02 Score=29.08 Aligned_cols=100 Identities=20% Similarity=0.378 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+||-.|+ |..+..+++.++..+ -..++++|..++..+.++++ |. +.+ +
T Consensus 166 ~g~~vlI~g~--g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~~-----------------------g~-~~~--v 216 (351)
T cd08285 166 LGDTVAVFGI--GPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKEY-----------------------GA-TDI--V 216 (351)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHc-----------------------CC-ceE--e
Confidence 3567877776 444444444444444 23688998876544444332 11 010 1
Q ss_pred Eeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.....+..+.+..+ +..+|+|+--... . ..+..+++.|+++|.++.-..
T Consensus 217 ~~~~~~~~~~i~~~~~~~~~d~vld~~g~---~--~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 217 DYKNGDVVEQILKLTGGKGVDAVIIAGGG---Q--DTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred cCCCCCHHHHHHHHhCCCCCcEEEECCCC---H--HHHHHHHHHhhcCCEEEEecc
Confidence 11111111111111 2468877643332 1 356788888999998875443
No 389
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=45.83 E-value=98 Score=24.79 Aligned_cols=70 Identities=10% Similarity=-0.005 Sum_probs=43.4
Q ss_pred cEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEEEccceEE
Q 041517 251 VGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWV 320 (327)
Q Consensus 251 ~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~~gq~w~ 320 (327)
.++-+|.|.......-...|+.++..+++|-+|++.+..+-.....-...+...+..+|+++....+.+-
T Consensus 26 ~~~~~~~D~~s~~~~~R~~~~~ll~~~~~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~gi~l~~~~~~~~ 95 (126)
T cd03768 26 ECDKIFEEKGSGGKKERPELQKLLEDLREGDTLVVTKLDRLGRSTKDLLEIVEELREKGVSLRSLTEGID 95 (126)
T ss_pred CcceEEEEccccCCcCCHHHHHHHHhCcCCCEEEEEEcchhcCcHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 3455778865433233467888888888998998888876221111112233446788999887665553
No 390
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=45.74 E-value=1.2e+02 Score=28.86 Aligned_cols=90 Identities=16% Similarity=-0.029 Sum_probs=48.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+||=.|+ |.....+++.++.. +.++++++.++.-.+.+++. |.+ .+ +
T Consensus 165 ~g~~VlV~G~--g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~-----------------------Ga~-~v--i 214 (329)
T TIGR02822 165 PGGRLGLYGF--GGSAHLTAQVALAQ--GATVHVMTRGAAARRLALAL-----------------------GAA-SA--G 214 (329)
T ss_pred CCCEEEEEcC--CHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHh-----------------------CCc-ee--c
Confidence 3568888886 33333333333334 46799998877655544432 111 11 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
... +. . ...+|+++.-... . ..+...++.|++||.+++-.
T Consensus 215 ~~~--~~----~--~~~~d~~i~~~~~---~--~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 215 GAY--DT----P--PEPLDAAILFAPA---G--GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ccc--cc----C--cccceEEEECCCc---H--HHHHHHHHhhCCCcEEEEEe
Confidence 100 00 0 1246766542222 1 46888999999999887644
No 391
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=45.34 E-value=1.3e+02 Score=28.96 Aligned_cols=45 Identities=24% Similarity=0.181 Sum_probs=28.4
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+..+||=+|+ |..+..+++.++.++ -.+|+++|..++..+.+++
T Consensus 186 ~~g~~VlV~G~--g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 186 KKGSTVAIFGL--GAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH
Confidence 34567888885 566655555554443 2379999988765555543
No 392
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=45.32 E-value=2e+02 Score=28.40 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=27.7
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
...+++|+=||. |.+++.+|..++.. +.+|+.++..+.
T Consensus 134 ~~~~~~vvViGg--G~~g~e~A~~l~~~--g~~Vtli~~~~~ 171 (427)
T TIGR03385 134 KNKVENVVIIGG--GYIGIEMAEALRER--GKNVTLIHRSER 171 (427)
T ss_pred hcCCCeEEEECC--CHHHHHHHHHHHhC--CCcEEEEECCcc
Confidence 345789999976 78888888876644 457888887554
No 393
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=45.25 E-value=1.5e+02 Score=23.26 Aligned_cols=57 Identities=18% Similarity=0.065 Sum_probs=33.1
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
..+|+|+|-..... -.+.+...|+-|--+++.--.- .+.. -.+.+.+.++++|..+.
T Consensus 61 ~~~D~V~I~tp~~~-----h~~~~~~~l~~g~~v~~EKP~~-~~~~-~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 61 EDVDAVIIATPPSS-----HAEIAKKALEAGKHVLVEKPLA-LTLE-EAEELVEAAKEKGVKVM 117 (120)
T ss_dssp TTESEEEEESSGGG-----HHHHHHHHHHTTSEEEEESSSS-SSHH-HHHHHHHHHHHHTSCEE
T ss_pred hcCCEEEEecCCcc-----hHHHHHHHHHcCCEEEEEcCCc-CCHH-HHHHHHHHHHHhCCEEE
Confidence 46999999876533 3355555566666666654332 2223 33455566677776654
No 394
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=45.16 E-value=31 Score=28.54 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=22.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeC
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD 191 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~ 191 (327)
+...+|||||.|...-.|.+- +-+=++||.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE------GYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhC------CCCcccccc
Confidence 567999999999987766653 334478887
No 395
>PRK10867 signal recognition particle protein; Provisional
Probab=44.91 E-value=2.7e+02 Score=28.34 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=29.1
Q ss_pred CcEeEEEEcCC--CC-CCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 250 VVGDLIEIDAG--HD-FNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 250 ~~fDLIfIDa~--h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
..+|+|+||.. +. .......+..+.+.++|..++++-|-.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 56999999954 22 234556777888889999888777754
No 396
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=44.57 E-value=90 Score=30.79 Aligned_cols=43 Identities=14% Similarity=0.014 Sum_probs=26.6
Q ss_pred CCEEEEEcC--cchHHHHHHHHHhccCCCC-cEEEEEeCCCCChhhhhh
Q 041517 156 PRVIIEVGS--FLGASALHMANLTRQLGLD-SQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 156 p~~VLEIGt--~~G~Sal~lA~a~r~l~~~-~~V~~ID~~~~~~~~A~~ 201 (327)
..+|+=+|. +.|..++.+|++ ++.+ .+|+++|.+++-.+.+++
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~---~G~g~~~Vi~~~~~~~r~~~a~~ 221 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIH---GPIGPSLLVVTDVNDERLARAQR 221 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHh---cccCCceEEEEcCCHHHHHHHHH
Confidence 357887863 355555556653 3322 379999998765555544
No 397
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=43.86 E-value=1.3e+02 Score=28.36 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=24.1
Q ss_pred cCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCCh
Q 041517 154 VRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWP 196 (327)
Q Consensus 154 ~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~ 196 (327)
.+..+||-.|++. |..++.+|+. + +.+++++..+++..
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~---~--g~~v~~~~~s~~~~ 196 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKA---R--GARVIVVDIDDERL 196 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---c--CCeEEEECCCHHHH
Confidence 3456888888753 5555666664 3 57788887655433
No 398
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=43.72 E-value=51 Score=32.84 Aligned_cols=45 Identities=9% Similarity=-0.048 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCCh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWP 196 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~ 196 (327)
++++++.......|.|==+|+|...+..|.- ++-|++-|++-.+.
T Consensus 199 i~AN~Amv~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~v 243 (421)
T KOG2671|consen 199 IMANQAMVKPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTV 243 (421)
T ss_pred HHhhhhccCCCCEEecCccccCceeeehhhh------cceeeccccchhee
Confidence 3344443334567889888889887776664 88999999987655
No 399
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=43.22 E-value=2.3e+02 Score=28.58 Aligned_cols=38 Identities=16% Similarity=-0.019 Sum_probs=23.4
Q ss_pred CEEEEEc-CcchHHHHHHHHHhccC--CCCcEEEEEeCCCC
Q 041517 157 RVIIEVG-SFLGASALHMANLTRQL--GLDSQILCIDDFRG 194 (327)
Q Consensus 157 ~~VLEIG-t~~G~Sal~lA~a~r~l--~~~~~V~~ID~~~~ 194 (327)
+.++=+| +|.|-+|....-+.+.. ..+.+|..||.++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4677778 78898876643332211 22567777877664
No 400
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=43.05 E-value=3.6e+02 Score=26.99 Aligned_cols=114 Identities=20% Similarity=0.172 Sum_probs=67.0
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+|=+.+.+.++++.++=+.+ |-+++.||...-+++++.+|++--. .+..-+ |..
T Consensus 38 ~FE~~~ae~~G~k~ava~~s--gT~AL~laL~al~ig~GDeVI~ps~--TfvATa---------------------n~i- 91 (374)
T COG0399 38 RFEQAFAEYLGVKYAVAVSS--GTAALHLALLALAIGPGDEVIVPSF--TFVATA---------------------NAV- 91 (374)
T ss_pred HHHHHHHHHhCCCeEEEecC--hHHHHHHHHHhcCCCCCCEEEecCC--chHHHH---------------------HHH-
Confidence 34455666778888876666 6677777654224666665554322 111111 110
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCC--CCeEEEEEcCCCCCCchhHHHHH
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILR--PGGVIFGHDYFTAADNRGVRRAV 301 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~--pGGvIi~dD~~~~~~~~GV~~Av 301 (327)
.. ....-||+|.+.. ++- +.+.+...+. +.++|.+|=+.... -.+++
T Consensus 92 ---------------------~~--~Ga~PVFvDid~~T~ni---d~~~ie~aIt~~tKAIipVhl~G~~~----dm~~i 141 (374)
T COG0399 92 ---------------------LL--VGAKPVFVDIDPDTLNI---DPDLIEAAITPRTKAIIPVHLAGQPC----DMDAI 141 (374)
T ss_pred ---------------------HH--cCCeEEEEecCCcccCC---CHHHHHHHcccCCeEEEEehhccCCC----CHHHH
Confidence 11 1134678887743 433 3334444444 47899999888733 36889
Q ss_pred HHHHHHcCCeEEE
Q 041517 302 NLFAKINGLKVQI 314 (327)
Q Consensus 302 ~~f~~~~gl~v~~ 314 (327)
.++++++|+.|.-
T Consensus 142 ~~la~~~~l~vIE 154 (374)
T COG0399 142 MALAKRHGLPVIE 154 (374)
T ss_pred HHHHHHcCCeEEE
Confidence 9999999988754
No 401
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.41 E-value=1.1e+02 Score=30.86 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=20.5
Q ss_pred CcEeEEEEcCCC--CC-CcHHHHHHHHHccCCCCeEEE
Q 041517 250 VVGDLIEIDAGH--DF-NSAWADINRAWRILRPGGVIF 284 (327)
Q Consensus 250 ~~fDLIfIDa~h--~~-~~v~~dl~~~~~lL~pGGvIi 284 (327)
..+|+|+||..- .. ......+..+...+.|.-+++
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~L 321 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCF 321 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEE
Confidence 458999999542 22 233455666666667754333
No 402
>PRK10083 putative oxidoreductase; Provisional
Probab=42.29 E-value=1.4e+02 Score=28.07 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=24.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhcc-CCCCcEEEEEeCCCCChhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQ-LGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~-l~~~~~V~~ID~~~~~~~~A~ 200 (327)
...+||=+|+ |..+..+++.++. ++ -..++++|..++-.+.++
T Consensus 160 ~g~~vlI~g~--g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~ 203 (339)
T PRK10083 160 EQDVALIYGA--GPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAK 203 (339)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHH
Confidence 3457777784 4555554444433 23 335888888665444443
No 403
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=42.22 E-value=1.5e+02 Score=28.58 Aligned_cols=96 Identities=18% Similarity=0.281 Sum_probs=51.3
Q ss_pred CCEEEEEcCcc--hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSFL--GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~--G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
..+||=.|... |..++.||++ ++ .+++++-..++-.+.+++. |. +.+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~---~G--~~~v~~~~s~~k~~~~~~l-----------------------GA-d~v-- 191 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKA---LG--ATVVAVVSSSEKLELLKEL-----------------------GA-DHV-- 191 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHH---cC--CcEEEEecCHHHHHHHHhc-----------------------CC-CEE--
Confidence 57899998544 4556667775 33 2445554443322233221 11 111
Q ss_pred eEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 234 VPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 234 V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+-.+.+.++ +..+|+|+-=..- ..+...+..|++||.++.-..
T Consensus 192 i~y~~~~~~~~v~~~t~g~gvDvv~D~vG~------~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 192 INYREEDFVEQVRELTGGKGVDVVLDTVGG------DTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EcCCcccHHHHHHHHcCCCCceEEEECCCH------HHHHHHHHHhccCCEEEEEec
Confidence 333334334444433 2368988642221 466778888999998876444
No 404
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=42.13 E-value=2e+02 Score=28.46 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=64.8
Q ss_pred cCCCEEEEEcC-cchHHHHH--HHHHhccCCCCcEEEEEeCCCCC-hhhhhhhcccCccccchHHHHHHHHHHhhhccCC
Q 041517 154 VRPRVIIEVGS-FLGASALH--MANLTRQLGLDSQILCIDDFRGW-PGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID 229 (327)
Q Consensus 154 ~~p~~VLEIGt-~~G~Sal~--lA~a~r~l~~~~~V~~ID~~~~~-~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~ 229 (327)
.+|-.||=+|+ |.|-+|-. +|..++..+...-+.+.|+|.-. .+.-+.+.+ + .|
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~e----------------r---~g--- 194 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGE----------------R---LG--- 194 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHH----------------H---hC---
Confidence 35788999997 56666543 67766666667778889998732 222111111 1 11
Q ss_pred cccceEeee---c-chh----hhhhh-cCCcEeEEEEcCC---CCCCcHHHHHHHHHccCCCCe------EEEEEcCCC
Q 041517 230 SVLPVPFSS---G-SAL----TKLCE-WGVVGDLIEIDAG---HDFNSAWADINRAWRILRPGG------VIFGHDYFT 290 (327)
Q Consensus 230 ~v~~V~~~~---g-da~----~~L~~-l~~~fDLIfIDa~---h~~~~v~~dl~~~~~lL~pGG------vIi~dD~~~ 290 (327)
+.+++ | |.. +.+.. ....+|+|+||-. |.....++.|+.+.+.++|-= ++++-|-..
T Consensus 195 ----v~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 195 ----VPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred ----CeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 22222 1 211 11111 1378999999943 444556778888888888864 666646554
No 405
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=41.69 E-value=1e+02 Score=30.58 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhc
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFK 203 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~ 203 (327)
|+.++.+ +......|.-+|||. |.+++.-|.+ .+ -.+|++||+++.-.+.|+++.
T Consensus 175 Gav~nta-~v~~G~tvaV~GlGgVGlaaI~gA~~---ag-A~~IiAvD~~~~Kl~~A~~fG 230 (366)
T COG1062 175 GAVVNTA-KVEPGDTVAVFGLGGVGLAAIQGAKA---AG-AGRIIAVDINPEKLELAKKFG 230 (366)
T ss_pred HHhhhcc-cCCCCCeEEEEeccHhHHHHHHHHHH---cC-CceEEEEeCCHHHHHHHHhcC
Confidence 4555543 233457899999964 6667766664 33 789999999998888887754
No 406
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=41.32 E-value=2.9e+02 Score=25.50 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=24.7
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
.++..+|+=||+|. .+..++..+-..| -++++.+|.+.
T Consensus 29 ~L~~~~VliiG~Gg--lGs~va~~La~~G-vg~i~lvD~D~ 66 (245)
T PRK05690 29 KLKAARVLVVGLGG--LGCAASQYLAAAG-VGTLTLVDFDT 66 (245)
T ss_pred HhcCCeEEEECCCH--HHHHHHHHHHHcC-CCEEEEEcCCE
Confidence 44678999999953 3333333332344 47999999976
No 407
>PRK11519 tyrosine kinase; Provisional
Probab=41.08 E-value=2e+02 Score=31.01 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=35.7
Q ss_pred cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 248 WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 248 l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
+...||+|+||...-..- .|-..+.++. +|+|++-.+.. .....+.++++.+.+ .+.++
T Consensus 632 l~~~yD~ViiDtpP~~~v--~Da~~l~~~~--d~~l~Vvr~~~-t~~~~~~~~~~~l~~-~~~~~ 690 (719)
T PRK11519 632 ASKNYDLVLIDTPPILAV--TDAAIVGRHV--GTTLMVARYAV-NTLKEVETSLSRFEQ-NGIPV 690 (719)
T ss_pred HHhcCCEEEEeCCCcccc--hHHHHHHHHC--CeEEEEEeCCC-CCHHHHHHHHHHHHh-CCCCe
Confidence 346899999998753322 3434444433 67777766665 334457777777643 45443
No 408
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.65 E-value=1e+02 Score=30.46 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=24.6
Q ss_pred CEEEEEcC-cchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 157 RVIIEVGS-FLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 157 ~~VLEIGt-~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
+.|-=+|- |.|..++.+|.|| +.+|++||....
T Consensus 183 ~~vgI~GlGGLGh~aVq~AKAM-----G~rV~vis~~~~ 216 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHMAVQYAKAM-----GMRVTVISTSSK 216 (360)
T ss_pred cEEEEecCcccchHHHHHHHHh-----CcEEEEEeCCch
Confidence 34444443 3788899999985 799999999864
No 409
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=40.62 E-value=3.3 Score=38.30 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=26.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPG 197 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~ 197 (327)
|.++||+|.|.|..+..|+-.+ .+|++-|.+..|..
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f------eevyATElS~tMr~ 148 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF------EEVYATELSWTMRD 148 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH------HHHHHHHhhHHHHH
Confidence 6899999999999999988642 33566666555443
No 410
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=40.19 E-value=30 Score=34.71 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=16.8
Q ss_pred CCEEEEEcCcchHHHHHHHH
Q 041517 156 PRVIIEVGSFLGASALHMAN 175 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~ 175 (327)
+.+|+|+||++|..|+.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 56899999999999877643
No 411
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=40.05 E-value=89 Score=24.23 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=21.3
Q ss_pred cCCCEEEEEcCcchHHHH-HHHHHhccCCCCcEEEEEeCC
Q 041517 154 VRPRVIIEVGSFLGASAL-HMANLTRQLGLDSQILCIDDF 192 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal-~lA~a~r~l~~~~~V~~ID~~ 192 (327)
..|++||-||+-+||... .++.++ +.+...++|-..
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aF---g~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAF---GAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHH---CC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHh---cCCCCEEEEeec
Confidence 458999999999999743 355543 446666776553
No 412
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=40.01 E-value=40 Score=32.33 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=41.0
Q ss_pred hccCCchHHHHHHHHHhhc------CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCCh
Q 041517 136 RIKGWGSYGAVFGNLIDKV------RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWP 196 (327)
Q Consensus 136 ~~~gw~~~g~lL~~L~~~~------~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~ 196 (327)
....|.....++..+.... ..++|||+|||.|.-.+....- + ...+...|.+....
T Consensus 91 g~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~----~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 91 GLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK----G-AVSVHFQDFNAEVL 152 (282)
T ss_pred ceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh----c-cceeeeEecchhhe
Confidence 5567877778888887442 4689999999999998887763 1 26777777766544
No 413
>PHA02518 ParA-like protein; Provisional
Probab=40.00 E-value=1.1e+02 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.025 Sum_probs=19.2
Q ss_pred cCcchHHHHHHHHHhccCCCCcEEEEEeCCCCC
Q 041517 163 GSFLGASALHMANLTRQLGLDSQILCIDDFRGW 195 (327)
Q Consensus 163 Gt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~ 195 (327)
|+|.=-+++.+|.++.. .+.+|..||.++..
T Consensus 11 GvGKTT~a~~la~~la~--~g~~vlliD~D~q~ 41 (211)
T PHA02518 11 GAGKTTVATNLASWLHA--DGHKVLLVDLDPQG 41 (211)
T ss_pred CCCHHHHHHHHHHHHHh--CCCeEEEEeCCCCC
Confidence 34333445556665432 36799999999863
No 414
>PRK05939 hypothetical protein; Provisional
Probab=39.95 E-value=3.2e+02 Score=27.07 Aligned_cols=41 Identities=7% Similarity=-0.016 Sum_probs=25.8
Q ss_pred CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC-eEEEEEcCC
Q 041517 249 GVVGDLIEIDAGHDFNSAWADINRAWRILRPG-GVIFGHDYF 289 (327)
Q Consensus 249 ~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG-GvIi~dD~~ 289 (327)
...-.+|++..-+.......+++.+.++.+.- .++++|+..
T Consensus 129 ~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 129 RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 44567888875443333446788777777654 466666654
No 415
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=39.44 E-value=1.7e+02 Score=22.28 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=43.1
Q ss_pred EEcCCCCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE---EccceEEEe
Q 041517 256 EIDAGHDF-NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ---IDGQHWVIH 322 (327)
Q Consensus 256 fIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~---~~gq~w~i~ 322 (327)
.+|+.-.. +.+.-.++..++.|++|+++.+- .+.++..+-+..+|+..|.++. ..+..|.+.
T Consensus 11 ~lD~~Gl~CP~Pll~~kk~l~~l~~G~~l~V~-----~dd~~~~~di~~~~~~~G~~~~~~~~~~g~~~~~ 76 (81)
T PRK00299 11 TLDALGLRCPEPVMMVRKTVRNMQPGETLLII-----ADDPATTRDIPSFCRFMDHELLAQETEQLPYRYL 76 (81)
T ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCCEEEEE-----eCCccHHHHHHHHHHHcCCEEEEEEecCCEEEEE
Confidence 35654332 44566788899999999966551 1246789999999999998875 345556553
No 416
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=39.41 E-value=2e+02 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=22.7
Q ss_pred cEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 251 VGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 251 ~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.+|+++++... . ..++..++.|+++|.++.
T Consensus 230 ~~d~vi~~~~~---~--~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 230 GAHAAVVTAVA---K--AAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred CCcEEEEeCCC---H--HHHHHHHHhccCCCEEEE
Confidence 57888887543 2 467888999999998775
No 417
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=39.31 E-value=1.3e+02 Score=31.03 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=27.4
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
+..++|+=||+| ..+..+|+.+++. +.+|+.+|.++.
T Consensus 252 LaGKtVgVIG~G--~IGr~vA~rL~a~--Ga~ViV~e~dp~ 288 (476)
T PTZ00075 252 IAGKTVVVCGYG--DVGKGCAQALRGF--GARVVVTEIDPI 288 (476)
T ss_pred cCCCEEEEECCC--HHHHHHHHHHHHC--CCEEEEEeCCch
Confidence 357899999985 5777777766544 568999988765
No 418
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=39.29 E-value=16 Score=25.62 Aligned_cols=21 Identities=52% Similarity=0.746 Sum_probs=17.7
Q ss_pred cChhHHHHHHHHHhhhccccC
Q 041517 24 NNPTAYIILLLLSYALGYLSS 44 (327)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~ 44 (327)
+.+.+-+++++++-++||+-|
T Consensus 24 ~~~q~~ll~vllsIalGylvs 44 (48)
T PF06612_consen 24 NVRQARLLIVLLSIALGYLVS 44 (48)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 556788899999999999865
No 419
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=39.09 E-value=70 Score=32.51 Aligned_cols=66 Identities=18% Similarity=0.070 Sum_probs=37.9
Q ss_pred hhcCCcEeEEEEcCCCCCCcHHHHHH----HHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEEE
Q 041517 246 CEWGVVGDLIEIDAGHDFNSAWADIN----RAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 246 ~~l~~~fDLIfIDa~h~~~~v~~dl~----~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
..+..+| +|-.|..|..++ .+-+ .-.+.|..|=+|-.+--.+-.....-...++.+|+..++.+|.
T Consensus 306 ~~l~nS~-~iSaD~ahaihP--ny~~~hd~~n~p~ln~G~vik~~an~ry~td~~~~a~~~~l~~~~~Vp~Q~ 375 (437)
T COG1362 306 RALANSF-LISADVAHAIHP--NYPEKHDPNNAPKLNKGPVIKVNANQRYATDSEGIALLRKLAQKAGVPWQV 375 (437)
T ss_pred HHHhhce-eeehhhHhhcCC--CCccccCcccCCccCCCceEEecCCCCcccCchHHHHHHHHHHHcCCceEE
Confidence 3444556 777887776555 2222 2345555555555543333222222447788999999998853
No 420
>PRK06141 ornithine cyclodeaminase; Validated
Probab=38.97 E-value=1.9e+02 Score=27.75 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=29.7
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
...+++|+=||| |..+..+++++..+.+..+|+.++.+++
T Consensus 122 ~~~~~~v~iiG~--G~~a~~~~~al~~~~~~~~V~V~~Rs~~ 161 (314)
T PRK06141 122 RKDASRLLVVGT--GRLASLLALAHASVRPIKQVRVWGRDPA 161 (314)
T ss_pred CCCCceEEEECC--cHHHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 345789999998 7888887765544445678999988754
No 421
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=38.83 E-value=1.6e+02 Score=23.69 Aligned_cols=66 Identities=12% Similarity=-0.050 Sum_probs=41.5
Q ss_pred cEeEEEEcCCCCC--CcHHHHHHHHHccCC--CCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEEEcc
Q 041517 251 VGDLIEIDAGHDF--NSAWADINRAWRILR--PGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQIDG 316 (327)
Q Consensus 251 ~fDLIfIDa~h~~--~~v~~dl~~~~~lL~--pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~~g 316 (327)
..+-+|.|..... ......|+.++..++ ++.+|++.+..+-...+.....+.+.+...|+++....
T Consensus 33 ~i~~~~~d~~~s~~~~~~R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi~l~~~~ 102 (137)
T cd00338 33 EVVGEYEDAGSSATSLVDRPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHGVRVVTAD 102 (137)
T ss_pred EEEEEEEeCCCCcccccCCHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCCCEEEEec
Confidence 4566777754322 223467777777777 67788888887633334333444455677888887655
No 422
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=38.23 E-value=1.7e+02 Score=27.54 Aligned_cols=114 Identities=15% Similarity=0.091 Sum_probs=60.5
Q ss_pred EcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecch
Q 041517 162 VGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSA 241 (327)
Q Consensus 162 IGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda 241 (327)
++.+-|.=.+. ++. +.+.-+++.+|..+.-.+.-++ |+.. ..+ |.+...|+
T Consensus 62 l~~YPGSP~ia-~~l---lR~qDrl~l~ELHp~d~~~L~~-------------------~~~~---~~~---v~v~~~DG 112 (245)
T PF04378_consen 62 LRFYPGSPAIA-ARL---LREQDRLVLFELHPQDFEALKK-------------------NFRR---DRR---VRVHHRDG 112 (245)
T ss_dssp --EEE-HHHHH-HHH---S-TTSEEEEE--SHHHHHHHTT-------------------S--T---TS----EEEE-S-H
T ss_pred cCcCCCCHHHH-HHh---CCccceEEEEecCchHHHHHHH-------------------Hhcc---CCc---cEEEeCch
Confidence 55666765444 443 3457899999996653332222 2221 112 88888998
Q ss_pred hhhhhhc---CCcEeEEEEcCC----CCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHH
Q 041517 242 LTKLCEW---GVVGDLIEIDAG----HDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKI 307 (327)
Q Consensus 242 ~~~L~~l---~~~fDLIfIDa~----h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~ 307 (327)
.+.+..+ ..+=-||+||-. .+|..+...+..+++.-.-|-++|.==+.. -..+.+..+.+.+.
T Consensus 113 ~~~l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~---~~~~~~~~~~l~~~ 182 (245)
T PF04378_consen 113 YEGLKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKD---RERVDRFLRALKAL 182 (245)
T ss_dssp HHHHHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESS---HHHHHHHHHHHHHH
T ss_pred hhhhhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeeccc---HHHHHHHHHHHHhc
Confidence 8877654 244559999954 345567777888888887777777644443 23466666666544
No 423
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.12 E-value=2e+02 Score=26.77 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=24.7
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhh
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFR 199 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A 199 (327)
+|.=||+ |..+..+|..+... +.+|+.+|.+++..+.+
T Consensus 5 kI~VIG~--G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~ 42 (282)
T PRK05808 5 KIGVIGA--GTMGNGIAQVCAVA--GYDVVMVDISDAAVDRG 42 (282)
T ss_pred EEEEEcc--CHHHHHHHHHHHHC--CCceEEEeCCHHHHHHH
Confidence 5667787 55555555554322 56899999988766433
No 424
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.11 E-value=2e+02 Score=27.21 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=22.3
Q ss_pred CcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 250 VVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 250 ~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
..+|+|+||..-.. ......+..+.....|.-++++-+
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~ 193 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS 193 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEc
Confidence 46899999954222 334455556666667765454433
No 425
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.04 E-value=3.5e+02 Score=25.49 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=28.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
.++.||=.||..|..+-.+|+-+.+ .+..|++.--..
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~--~G~~V~AtaR~~ 42 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFAR--NGYLVYATARRL 42 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHh--CCeEEEEEcccc
Confidence 5789999999999999999987543 367777765543
No 426
>PLN02970 serine racemase
Probab=37.88 E-value=73 Score=30.75 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=30.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
..+=+++|+|.+..-++..+|.+++..+|+++|+...
T Consensus 177 D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~ 213 (328)
T PLN02970 177 DVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGA 213 (328)
T ss_pred CEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCC
Confidence 4455688889998889999988899999999999653
No 427
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=37.65 E-value=1.1e+02 Score=28.66 Aligned_cols=39 Identities=8% Similarity=-0.152 Sum_probs=25.1
Q ss_pred EeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 252 GDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 252 fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.-+++..|-..| +.+..-++.+..+..||+.|++|-+..
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 336666666544 234445666666677999999987653
No 428
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=37.65 E-value=2.3e+02 Score=27.27 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=26.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~ 200 (327)
...+||=+|+ |..++..++.++.++ -.+|+++|.+++-.+.++
T Consensus 186 ~g~~VlV~G~--G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 186 PGSTVAVFGL--GAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH
Confidence 4567888886 555555554444444 237999998776554443
No 429
>PRK13243 glyoxylate reductase; Reviewed
Probab=37.37 E-value=1.8e+02 Score=28.24 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=29.4
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
.+..++|.=||. |..+..+|+.+++. +.+|+++|.++.
T Consensus 147 ~L~gktvgIiG~--G~IG~~vA~~l~~~--G~~V~~~d~~~~ 184 (333)
T PRK13243 147 DVYGKTIGIIGF--GRIGQAVARRAKGF--GMRILYYSRTRK 184 (333)
T ss_pred CCCCCEEEEECc--CHHHHHHHHHHHHC--CCEEEEECCCCC
Confidence 456789999999 77777777776644 578999998754
No 430
>PRK06382 threonine dehydratase; Provisional
Probab=37.31 E-value=73 Score=31.77 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
+-..+.+.++.-..+=+++|+|.+..-++..++.+.++.+|+++|+...
T Consensus 163 ~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~ 211 (406)
T PRK06382 163 IGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELS 211 (406)
T ss_pred HHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 3344444444335666788888888888888888899999999999653
No 431
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=36.69 E-value=1.2e+02 Score=27.61 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=31.0
Q ss_pred HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEEEcc
Q 041517 266 AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQIDG 316 (327)
Q Consensus 266 v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~~g 316 (327)
....++.+...++||.||++||... ....+-..+-...+..|+++.+..
T Consensus 173 ~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 173 WQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHHCCCEEEEhH
Confidence 3456778888999999999999643 111122222333466788876543
No 432
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=36.30 E-value=1.3e+02 Score=25.47 Aligned_cols=123 Identities=12% Similarity=-0.010 Sum_probs=61.8
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc--ceE
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL--PVP 235 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~--~V~ 235 (327)
+|.=||+|.+.+++....+. .+.+|+....+++..+.-++... |... +.+..+ ++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~----~g~~V~l~~~~~~~~~~i~~~~~----------------n~~~--~~~~~l~~~i~ 58 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD----NGHEVTLWGRDEEQIEEINETRQ----------------NPKY--LPGIKLPENIK 58 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH----CTEEEEEETSCHHHHHHHHHHTS----------------ETTT--STTSBEETTEE
T ss_pred CEEEECcCHHHHHHHHHHHH----cCCEEEEEeccHHHHHHHHHhCC----------------CCCC--CCCcccCcccc
Confidence 46778998888766644431 25688888887643332111110 1110 000001 144
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC-CCCchhHHHHHHHHHHHcC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT-AADNRGVRRAVNLFAKING 309 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~-~~~~~GV~~Av~~f~~~~g 309 (327)
+. .|-.+.+. ..|+|++=-.. ......++.+.+.++++-+|+.--=.. .....-+.+.+.+.+....
T Consensus 59 ~t-~dl~~a~~----~ad~IiiavPs--~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~ 126 (157)
T PF01210_consen 59 AT-TDLEEALE----DADIIIIAVPS--QAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPR 126 (157)
T ss_dssp EE-SSHHHHHT----T-SEEEE-S-G--GGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCG
T ss_pred cc-cCHHHHhC----cccEEEecccH--HHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcc
Confidence 43 33334443 36888886544 334578899999998887777522111 0011116677777665544
No 433
>PRK11761 cysM cysteine synthase B; Provisional
Probab=36.27 E-value=81 Score=30.01 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=32.0
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
..+=+++|+|.+..-+++.++.+.++.+|+++|+...
T Consensus 169 d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~ 205 (296)
T PRK11761 169 THFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEG 205 (296)
T ss_pred CEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 6677888889999899999988888999999999653
No 434
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=36.16 E-value=68 Score=31.82 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=30.5
Q ss_pred hccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 136 RIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 136 ~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
...+|+..++ +.++..+|+=||||.-.+.+. ..+-..+ -++++.+|.+.
T Consensus 27 ~l~~~g~~~q------~~l~~~~VliiG~GglG~~v~--~~La~~G-vg~i~ivD~D~ 75 (370)
T PRK05600 27 ALPGFGIEQQ------ERLHNARVLVIGAGGLGCPAM--QSLASAG-VGTITLIDDDT 75 (370)
T ss_pred chhhhCHHHH------HHhcCCcEEEECCCHHHHHHH--HHHHHcC-CCEEEEEeCCE
Confidence 3445765543 345677999999964444333 3322334 57999999986
No 435
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=36.02 E-value=3.5e+02 Score=25.80 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=28.5
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
....+|+=||+ |..+..+++.++..+ ..+|+.+|.+++
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g-~~~V~v~~r~~~ 213 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKG-VAEITIANRTYE 213 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcC-CCEEEEEeCCHH
Confidence 35789999998 888888888765422 467888988654
No 436
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=35.91 E-value=92 Score=30.21 Aligned_cols=56 Identities=23% Similarity=0.154 Sum_probs=44.2
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
..||.+.+=+.+.......-|.+++..+.|||.|++-.-.. .|++.+.+.|.+--+
T Consensus 36 ~~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~----~g~~s~~k~l~~~~~ 91 (300)
T COG2813 36 DDFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKR----DGVRSAEKMLEKYGG 91 (300)
T ss_pred CCCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEeccc----chHHHHHHHHHHhcC
Confidence 47999999888776666677889999999999888855544 589888888876544
No 437
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=35.71 E-value=32 Score=33.57 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=30.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGF 198 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~ 198 (327)
...+|+-||+|.-....+++++ ..+|.|||+++.++.+
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~------Pa~id~VDlN~ahiAl 100 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRA------PARIDVVDLNPAHIAL 100 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcC------CceeEEEeCCHHHHHH
Confidence 4578999999877666777774 7899999999976553
No 438
>PRK01294 lipase chaperone; Provisional
Probab=35.48 E-value=99 Score=30.36 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=17.2
Q ss_pred CCCCcCCCccccccccCcCCCChHHHHHH
Q 041517 81 LPPSLLDNFRVTTRCAADSVPPQLVRQTI 109 (327)
Q Consensus 81 ~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 109 (327)
..=+.||.=. .+..+ +++....++..+
T Consensus 66 l~gT~v~~~~-~da~g-~li~~~~~Rd~F 92 (336)
T PRK01294 66 LAGTSVPGLP-LDAQG-HLADTRALRDFF 92 (336)
T ss_pred ccCCCCCCcc-cCCCC-CeeccHHHHHHH
Confidence 4456667666 66677 777776665544
No 439
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=35.38 E-value=92 Score=29.49 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=32.0
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
..+=+++|+|.+..-++..++.+.++.+|+++|+...
T Consensus 165 d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~ 201 (290)
T TIGR01138 165 THFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEG 201 (290)
T ss_pred CEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 5677889999999889999988888999999999653
No 440
>PRK06815 hypothetical protein; Provisional
Probab=35.19 E-value=85 Score=30.07 Aligned_cols=48 Identities=13% Similarity=-0.003 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
+-..+.+.++.-..+=+++|+|.+..-++..++.+.++.+|+++|+..
T Consensus 158 ~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~ 205 (317)
T PRK06815 158 IGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPAN 205 (317)
T ss_pred HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 334444444333455667888888878888888888899999999964
No 441
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=34.95 E-value=83 Score=30.88 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=34.6
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
..+.+..+.-..+=+++|+|.+..-++.+++.+.++.+|+++++...
T Consensus 140 ~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 140 LEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred HHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 34444444334566777778888778888888888999999999764
No 442
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=34.78 E-value=1.8e+02 Score=21.24 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=37.8
Q ss_pred HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE---EccceEEEe
Q 041517 266 AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ---IDGQHWVIH 322 (327)
Q Consensus 266 v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~---~~gq~w~i~ 322 (327)
+.-....+++.|++|.++.+- .+.++..+-+..+|+..|.++. ..+..|.+.
T Consensus 12 Pvl~~kkal~~l~~G~~l~V~-----~d~~~a~~di~~~~~~~G~~~~~~~~~~~~~~~~ 66 (69)
T cd03420 12 PILKLKKEIDKLQDGEQLEVK-----ASDPGFARDAQAWCKSTGNTLISLETEKGKVKAV 66 (69)
T ss_pred HHHHHHHHHHcCCCCCEEEEE-----ECCccHHHHHHHHHHHcCCEEEEEEecCCEEEEE
Confidence 445677888889999955431 1236788999999999998875 356677664
No 443
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=34.77 E-value=2.1e+02 Score=26.72 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=20.6
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
..+|+|+-=... . ..++..++.|+++|.++.
T Consensus 230 ~~vd~vld~~g~---~--~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 230 GDFDVVFEASGA---P--AALASALRVVRPGGTVVQ 260 (339)
T ss_pred CCccEEEECCCC---H--HHHHHHHHHHhcCCEEEE
Confidence 348887642221 1 356788899999998875
No 444
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=34.72 E-value=2.2e+02 Score=26.64 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=26.6
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhh
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFR 199 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A 199 (327)
++|.=||+ |..+..||..+. ..+.+|+.+|.+++..+.+
T Consensus 5 ~~V~vIG~--G~mG~~iA~~l~--~~G~~V~~~d~~~~~~~~~ 43 (295)
T PLN02545 5 KKVGVVGA--GQMGSGIAQLAA--AAGMDVWLLDSDPAALSRG 43 (295)
T ss_pred CEEEEECC--CHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHH
Confidence 56777888 666666666543 2367999999988665433
No 445
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=34.62 E-value=92 Score=32.07 Aligned_cols=56 Identities=11% Similarity=-0.029 Sum_probs=39.7
Q ss_pred HHHHHHhhcC---CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 146 VFGNLIDKVR---PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 146 lL~~L~~~~~---p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+...+++.+. ..+|.+--||+|..-+..++.++.......+++.|..+.....++-
T Consensus 174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~m 232 (489)
T COG0286 174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKM 232 (489)
T ss_pred HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHH
Confidence 3344444443 3579999999999999988876532213789999998877766654
No 446
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=34.52 E-value=64 Score=31.11 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 273 AWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 273 ~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+..--..|++||++|...+++++|+-..++.-..+.||...
T Consensus 81 ~~~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tl 121 (310)
T PF12048_consen 81 ANSAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATL 121 (310)
T ss_pred ccCCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEE
Confidence 33445679999999999999999999999999999998744
No 447
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=34.47 E-value=2.1e+02 Score=29.63 Aligned_cols=127 Identities=15% Similarity=0.011 Sum_probs=68.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+|..+.++|+|.|.-...+-.. --.....+++||.+..|.......-..+-+.|.. +..+
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~l--wr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~-----~v~~------------ 259 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLL--WRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEP-----IVRK------------ 259 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhh--cccccceeEeeccchHHHHHHHHhhcChhhcCch-----hccc------------
Confidence 35788999999866654433332 1123678999999998887654432211111111 0111
Q ss_pred eEeeecchhhhhhhcC-CcEeEEEEc------CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 234 VPFSSGSALTKLCEWG-VVGDLIEID------AGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 234 V~~~~gda~~~L~~l~-~~fDLIfID------a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+.+.. ..++..+ ..||+|.+- +.. .......-..|....++|+.+++-.=.......++.+|-+-.
T Consensus 260 ~~~~r----~~~pi~~~~~yDlvi~ah~l~~~~s~-~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~eaR~~~ 332 (491)
T KOG2539|consen 260 LVFHR----QRLPIDIKNGYDLVICAHKLHELGSK-FSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEARQNL 332 (491)
T ss_pred cchhc----ccCCCCcccceeeEEeeeeeeccCCc-hhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHHHHhc
Confidence 11111 1122222 448888753 222 122334457888899999977775555434455566665544
No 448
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=34.46 E-value=3.9e+02 Score=27.43 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=72.0
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
.++|+=+|- |.|++.+++.+++. +.+|+..|..+.......+. .+.++ ++
T Consensus 7 ~~kv~V~GL--G~sG~a~a~~L~~~--G~~v~v~D~~~~~~~~~~~~--------------~~~~~------------i~ 56 (448)
T COG0771 7 GKKVLVLGL--GKSGLAAARFLLKL--GAEVTVSDDRPAPEGLAAQP--------------LLLEG------------IE 56 (448)
T ss_pred CCEEEEEec--ccccHHHHHHHHHC--CCeEEEEcCCCCccchhhhh--------------hhccC------------ce
Confidence 568888887 77778888877654 59999999987652211110 00011 33
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCC------------cHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFN------------SAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~------------~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
+..|.-.+ ++...+|+|+.--+-++. +++.+++.+++...+.=+|.+.--+- -.-++..+.+
T Consensus 57 ~~~g~~~~---~~~~~~d~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNG---KTTTTsli~~ 130 (448)
T COG0771 57 VELGSHDD---EDLAEFDLVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNG---KTTTTSLIAH 130 (448)
T ss_pred eecCccch---hccccCCEEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCc---hHHHHHHHHH
Confidence 43333222 233568888876443332 24567788888751222666644332 1237788888
Q ss_pred HHHHcCCeEEE
Q 041517 304 FAKINGLKVQI 314 (327)
Q Consensus 304 f~~~~gl~v~~ 314 (327)
+++..|++...
T Consensus 131 ~l~~~G~~~~l 141 (448)
T COG0771 131 LLKAAGLDALL 141 (448)
T ss_pred HHHhcCCCcee
Confidence 88888886543
No 449
>PRK08223 hypothetical protein; Validated
Probab=34.45 E-value=3e+02 Score=26.47 Aligned_cols=36 Identities=19% Similarity=0.063 Sum_probs=24.8
Q ss_pred hcCCCEEEEEcCcchHH--HHHHHHHhccCCCCcEEEEEeCCC
Q 041517 153 KVRPRVIIEVGSFLGAS--ALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~S--al~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
.++..+|+=||||.=.+ +..||+ .| =++++.+|.+.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~----aG-VG~i~lvD~D~ 61 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLAR----LG-IGKFTIADFDV 61 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHH----hC-CCeEEEEeCCC
Confidence 45678999999974333 333444 35 47899999976
No 450
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.35 E-value=1.9e+02 Score=27.28 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=21.2
Q ss_pred CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 250 VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 250 ~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+|+|+--... . ..+...++.|+++|.++.-
T Consensus 233 ~~~d~vld~~g~---~--~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 KGPDVVIECTGA---E--SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCEEEECCCC---H--HHHHHHHHHhhcCCEEEEE
Confidence 458887653321 1 2567788899999987753
No 451
>PRK06110 hypothetical protein; Provisional
Probab=34.32 E-value=66 Score=30.90 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=32.9
Q ss_pred HHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 149 NLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 149 ~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
.+.+..+.-..+=++||+|....-++..++.++++.+|+++|+..
T Consensus 162 Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~ 206 (322)
T PRK06110 162 ELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAH 206 (322)
T ss_pred HHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 344444333566678888888777887777788899999999964
No 452
>PRK07476 eutB threonine dehydratase; Provisional
Probab=34.27 E-value=93 Score=29.89 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
+-..+.+..+.-..+=+++|+|.+..-++..++.+.++.+|+++|+...
T Consensus 157 ~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~ 205 (322)
T PRK07476 157 IGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERG 205 (322)
T ss_pred HHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCc
Confidence 3344444444334567788889999999999998888999999999753
No 453
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=34.26 E-value=1e+02 Score=32.08 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=27.8
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhh
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFR 199 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A 199 (327)
.+|+=+|+ |..+..+++.++. .+.+++.||.+++..+.+
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~ 456 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLA--AGIPLVVIETSRTRVDEL 456 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHH--CCCCEEEEECCHHHHHHH
Confidence 34566666 8888889987653 357899999987655433
No 454
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=34.20 E-value=3.1e+02 Score=26.75 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=20.7
Q ss_pred cEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 251 VGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 251 ~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+|+|+ |+.- .. ..++.+++.+++||.++.-.
T Consensus 242 ~~D~vi-d~~G--~~--~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 242 TMDFII-DTVS--AE--HALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred CCcEEE-ECCC--cH--HHHHHHHHhhcCCCEEEEEc
Confidence 478776 4321 11 35678888999999887543
No 455
>PLN03139 formate dehydrogenase; Provisional
Probab=34.12 E-value=2.1e+02 Score=28.61 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=28.8
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
+..++|.=||+ |..+..+|+.++. .+.+|+++|....
T Consensus 197 L~gktVGIVG~--G~IG~~vA~~L~a--fG~~V~~~d~~~~ 233 (386)
T PLN03139 197 LEGKTVGTVGA--GRIGRLLLQRLKP--FNCNLLYHDRLKM 233 (386)
T ss_pred CCCCEEEEEee--cHHHHHHHHHHHH--CCCEEEEECCCCc
Confidence 45678888886 8888888888764 4788999998753
No 456
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=33.91 E-value=1.9e+02 Score=21.24 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=27.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCCh
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWP 196 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~ 196 (327)
+|+=||. |+.++-+|..++.+ +.+|+.|+..+.+.
T Consensus 1 ~vvViGg--G~ig~E~A~~l~~~--g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGG--GFIGIELAEALAEL--GKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESS--SHHHHHHHHHHHHT--TSEEEEEESSSSSS
T ss_pred CEEEECc--CHHHHHHHHHHHHh--CcEEEEEeccchhh
Confidence 3556666 99999999988764 57999999988765
No 457
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=33.88 E-value=57 Score=31.61 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=34.2
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
-..+-.|+|+|.+..-+++.+|...++.+++++|+...
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S 207 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGS 207 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCC
Confidence 56788999999999999999999888999999999753
No 458
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=33.65 E-value=2.7e+02 Score=26.84 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=25.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
...+||=+|+ |..+..+++.++.++ -.+|+++|..++-.+.+++
T Consensus 185 ~g~~VlV~G~--G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 185 EGDTVAVFGL--GGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH
Confidence 3567888887 444444433333343 2379999987765555543
No 459
>PRK05993 short chain dehydrogenase; Provisional
Probab=33.60 E-value=1.5e+02 Score=27.25 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=24.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
.++||=+|+. |..+..+|+.+. ..+.+|++++.++.
T Consensus 4 ~k~vlItGas-ggiG~~la~~l~--~~G~~Vi~~~r~~~ 39 (277)
T PRK05993 4 KRSILITGCS-SGIGAYCARALQ--SDGWRVFATCRKEE 39 (277)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHH--HCCCEEEEEECCHH
Confidence 3578888974 556666676653 23678999987654
No 460
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=33.52 E-value=4.7e+02 Score=25.65 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=62.8
Q ss_pred HHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 146 VFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 146 lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
+.+.+++..+ ....+-+|.|.-..--.+.+++ ..++.++...++.=.+....-+
T Consensus 62 l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~--~~~gd~vl~~~Ptf~~Y~~~a~---------------------- 117 (356)
T COG0079 62 LRAALAEYYGVVDPENVLVGNGSDELIELLVRAF--VEPGDTVLIPEPTFSMYEIAAQ---------------------- 117 (356)
T ss_pred HHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh--hcCCCEEEEcCCChHHHHHHHH----------------------
Confidence 3344444433 2245567776665555566653 3445577777775444332211
Q ss_pred hhccCCcccceEeee--cchhhhhhhcCCcEeEEEEcCCCC---CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 224 YQNAIDSVLPVPFSS--GSALTKLCEWGVVGDLIEIDAGHD---FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~--gda~~~L~~l~~~fDLIfIDa~h~---~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..|. ++..+.... -+-...+....+..|+||+.--+- ..-...+++.+...+..|+++|+|.-+-
T Consensus 118 ~~g~--~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~ 187 (356)
T COG0079 118 LAGA--EVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYI 187 (356)
T ss_pred hcCC--eEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchh
Confidence 1111 111122211 121222233334689999863220 0113478999999998899999998876
No 461
>PLN02356 phosphateglycerate kinase
Probab=33.31 E-value=74 Score=32.31 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=32.4
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCC
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDF 192 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~ 192 (327)
-..+=+++|+|.+..-+++.+|.+.++.+|+++|+.
T Consensus 251 ~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~ 286 (423)
T PLN02356 251 LDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPP 286 (423)
T ss_pred CCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 457779999999999999999999999999999984
No 462
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=33.26 E-value=2.8e+02 Score=26.18 Aligned_cols=32 Identities=28% Similarity=0.214 Sum_probs=20.9
Q ss_pred cEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 251 VGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 251 ~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+|+|+--... . ..++.+++.|++||.++.-.
T Consensus 241 ~~d~vid~~g~---~--~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAGV---Q--ATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCCC---H--HHHHHHHHhccCCCEEEEEc
Confidence 48887542221 1 35678888899999777643
No 463
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=33.22 E-value=5.4e+02 Score=26.21 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=28.0
Q ss_pred cEeEEEEcCC--CCC-CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 251 VGDLIEIDAG--HDF-NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 251 ~fDLIfIDa~--h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+|+|+||.. +.. ....+.+..+...+.|.-++++-|...
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATI 217 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccc
Confidence 3599999965 322 334455677777888998888877654
No 464
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=33.15 E-value=83 Score=29.90 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=30.3
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
..+=++||+|.+..-+++.++.+.++.+|++||+...
T Consensus 176 d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~ 212 (307)
T cd06449 176 DSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAK 212 (307)
T ss_pred CEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 4556777788888888888888888999999999654
No 465
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.14 E-value=2.2e+02 Score=27.70 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=24.8
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhh
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFR 199 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A 199 (327)
++|.=||+| ..+.-||..+. ..+.+|+.+|.+++..+.+
T Consensus 8 ~~VaVIGaG--~MG~giA~~~a--~aG~~V~l~D~~~~~~~~~ 46 (321)
T PRK07066 8 KTFAAIGSG--VIGSGWVARAL--AHGLDVVAWDPAPGAEAAL 46 (321)
T ss_pred CEEEEECcC--HHHHHHHHHHH--hCCCeEEEEeCCHHHHHHH
Confidence 678889985 33333333221 2389999999998765543
No 466
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=33.04 E-value=1.9e+02 Score=27.77 Aligned_cols=37 Identities=8% Similarity=0.218 Sum_probs=27.9
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
.+..++|.=||. |..+..+|+.+++. +.+|+++|...
T Consensus 142 ~L~gktvGIiG~--G~IG~~vA~~~~~f--gm~V~~~d~~~ 178 (311)
T PRK08410 142 EIKGKKWGIIGL--GTIGKRVAKIAQAF--GAKVVYYSTSG 178 (311)
T ss_pred ccCCCEEEEECC--CHHHHHHHHHHhhc--CCEEEEECCCc
Confidence 456789999999 66667777765543 78999999853
No 467
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=33.01 E-value=1e+02 Score=28.93 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=34.5
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
..+.+.++.-..+=+++|+|.+..-+++.++.+.+..+|+++|....
T Consensus 157 ~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~ 203 (304)
T cd01562 157 LEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGA 203 (304)
T ss_pred HHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 33443333234556788899998888888888888999999999653
No 468
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=33.00 E-value=40 Score=36.70 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=32.6
Q ss_pred cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 248 WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 248 l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
++..||++++|......+ +++..+...++-||+||+
T Consensus 89 LG~t~~~~VlD~~~~l~p--n~lar~v~TvrgGG~lvi 124 (758)
T COG1444 89 LGRTFDLLVLDLTEGLDP--NALARLVGTVRGGGLLVL 124 (758)
T ss_pred hchhhheEEEecccCCCH--HHHHHHHhheecceEEEE
Confidence 478999999999988888 999999999999997775
No 469
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=32.90 E-value=5e+02 Score=25.72 Aligned_cols=127 Identities=15% Similarity=0.065 Sum_probs=61.0
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|.=||+ |+.+..+|..+.. .+.+|+++|.++.-.+...+. ... ..++.+.+.+.+++. .| + +.+.
T Consensus 2 kI~vIGl--G~~G~~lA~~La~--~G~~V~~~d~~~~~v~~l~~g-~~~--~~e~~l~~~~~~~~~-~g---~---l~~~ 67 (411)
T TIGR03026 2 KIAVIGL--GYVGLPLAALLAD--LGHEVTGVDIDQEKVDKLNKG-KSP--IYEPGLDELLAKALA-AG---R---LRAT 67 (411)
T ss_pred EEEEECC--CchhHHHHHHHHh--cCCeEEEEECCHHHHHHhhcC-CCC--CCCCCHHHHHHHhhh-cC---C---eEEE
Confidence 3555777 6666666665432 367899999987644321110 000 001111111111111 11 1 3332
Q ss_pred ecchhhhhhhcCCcEeEEEEcCCCCC--------CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHH-HHHHHH
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAGHDF--------NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAV-NLFAKI 307 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~h~~--------~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av-~~f~~~ 307 (327)
. +..+.+ ...|+||+-..-+. ..+...++.+.+.+++|.+|+..--. .+|..+.+ ..+.++
T Consensus 68 ~-~~~~~~----~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv----~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 68 T-DYEDAI----RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV----PPGTTEEVVKPILER 137 (411)
T ss_pred C-CHHHHH----hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC----CCCchHHHHHHHHHh
Confidence 2 222222 23688887543322 12556667778888888877754333 35655444 344433
No 470
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.87 E-value=2e+02 Score=27.20 Aligned_cols=41 Identities=10% Similarity=0.051 Sum_probs=27.0
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
++|.=||+| ..+..||..+ +..+.+|+.+|.+++..+.+++
T Consensus 6 ~~V~ViGaG--~mG~~iA~~~--a~~G~~V~l~d~~~~~~~~~~~ 46 (286)
T PRK07819 6 QRVGVVGAG--QMGAGIAEVC--ARAGVDVLVFETTEELATAGRN 46 (286)
T ss_pred cEEEEEccc--HHHHHHHHHH--HhCCCEEEEEECCHHHHHHHHH
Confidence 478888884 4444444432 1237899999999987765443
No 471
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=32.86 E-value=1.1e+02 Score=27.75 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=28.4
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeC
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD 191 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~ 191 (327)
-..+=+++|+|.+..-++..++...+..+|+++|.
T Consensus 154 ~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 154 PDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred CCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 35566777778888878888888888999999999
No 472
>PRK08507 prephenate dehydrogenase; Validated
Probab=32.85 E-value=1.3e+02 Score=28.08 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=24.8
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCCh
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWP 196 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~ 196 (327)
+|.=||+ |..+..||..++..+...+|+++|.++...
T Consensus 2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~ 38 (275)
T PRK08507 2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHL 38 (275)
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 4555776 777777777765444445899999876543
No 473
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=32.77 E-value=2.7e+02 Score=27.68 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=57.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC-CChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR-GWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~-~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.+-+.|++..+...++=+++|.......+... +.++.+|++.+..- ....... .-+.
T Consensus 74 ~le~~lA~l~g~~~al~~~sG~~Ai~~~l~al---l~~Gd~Vl~~~~~~~~t~~~~~-------------------~~~~ 131 (403)
T PRK07810 74 MFEERLRLIEGAEACFATASGMSAVFTALGAL---LGAGDRLVAARSLFGSCFVVCN-------------------EILP 131 (403)
T ss_pred HHHHHHHHHhCCCcEEEECChHHHHHHHHHHH---hCCCCEEEEccCCcchHHHHHH-------------------HHHH
Confidence 34455556666677887887665554444332 45567777766311 1111000 0111
Q ss_pred hhccCCcccceEeeecchhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCe-EEEEEcCCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGG-VIFGHDYFT 290 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGG-vIi~dD~~~ 290 (327)
..|. . +.+......+.+.. +....++|++..-........+++.+..+.+..| ++++|+...
T Consensus 132 ~~G~--~---v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 132 RWGV--E---TVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HcCc--E---EEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 1222 1 33333322233322 3345678888654322222345666666666544 666777654
No 474
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=32.70 E-value=56 Score=32.66 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=32.5
Q ss_pred CCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCC
Q 041517 139 GWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGW 195 (327)
Q Consensus 139 gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~ 195 (327)
.| +...+...+++..+..+||-|.++ |-.++.++. ....+|+|||.++..
T Consensus 20 ~W-EDp~vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~-----~~P~~I~aVDlNp~Q 69 (380)
T PF11899_consen 20 CW-EDPRVDMEALNIGPDDRVLTITSA-GCNALDYLL-----AGPKRIHAVDLNPAQ 69 (380)
T ss_pred cc-CCcHHHHHHhCCCCCCeEEEEccC-CchHHHHHh-----cCCceEEEEeCCHHH
Confidence 45 333344445556566789999775 555565543 236999999999854
No 475
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.63 E-value=1.7e+02 Score=25.88 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFR 199 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A 199 (327)
+|..| +..+.++.+|+|+|-|..-+..++. + -..-+++|.++-....+
T Consensus 64 VLSll-~~n~~GklvDlGSGDGRiVlaaar~----g-~~~a~GvELNpwLVays 111 (199)
T KOG4058|consen 64 VLSLL-RGNPKGKLVDLGSGDGRIVLAAARC----G-LRPAVGVELNPWLVAYS 111 (199)
T ss_pred HHHHc-cCCCCCcEEeccCCCceeehhhhhh----C-CCcCCceeccHHHHHHH
Confidence 34433 4445689999999999988887774 2 23457888887555443
No 476
>PLN02256 arogenate dehydrogenase
Probab=32.52 E-value=3.2e+02 Score=26.24 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=25.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
+..+|.=||+ |..+-.+|..++.. +.+|+++|.++
T Consensus 35 ~~~kI~IIG~--G~mG~slA~~L~~~--G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGF--GNFGQFLAKTFVKQ--GHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEee--CHHHHHHHHHHHhC--CCEEEEEECcc
Confidence 5568888997 66777777766533 46899999875
No 477
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=32.41 E-value=86 Score=32.71 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccC--C--chHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccC
Q 041517 105 VRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKG--W--GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQL 180 (327)
Q Consensus 105 v~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~g--w--~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l 180 (327)
.+..+..+++..+..+++.+.++.++..++....| | -....| .+....+..||.|-+.|..--.-...+++.
T Consensus 352 Gr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~----e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v 427 (542)
T KOG0609|consen 352 GRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEM----EADIRAGKFLEYGEYEGNLYGTSLDSVRNV 427 (542)
T ss_pred chHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHH----hhhhhcCCceecCcchhccccchHHHHHHH
Confidence 35555555555455577777777555444443332 2 122222 234467899999998765533333444434
Q ss_pred CCCcEEEEEeCCCCChhhh
Q 041517 181 GLDSQILCIDDFRGWPGFR 199 (327)
Q Consensus 181 ~~~~~V~~ID~~~~~~~~A 199 (327)
-..|++..+|..+.....-
T Consensus 428 ~~~gKicvLdv~Pqalk~l 446 (542)
T KOG0609|consen 428 IASGKICVLDVEPQALKVL 446 (542)
T ss_pred HHhCCEEEEecCHHHhhhh
Confidence 4489999999999876544
No 478
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.27 E-value=1.7e+02 Score=27.42 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=26.1
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhh
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~ 200 (327)
++|.=||+ |..+..||..+.. .+.+|+.+|.+++..+.+.
T Consensus 2 ~~V~VIG~--G~mG~~iA~~la~--~G~~V~~~d~~~~~~~~~~ 41 (288)
T PRK09260 2 EKLVVVGA--GVMGRGIAYVFAV--SGFQTTLVDIKQEQLESAQ 41 (288)
T ss_pred cEEEEECc--cHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHH
Confidence 36777888 5555555555432 2678999999987665443
No 479
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=32.20 E-value=2.3e+02 Score=26.57 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+||=.|+ |.....+.+.++.++ .+++.++..++-.+.+++. |. +.+ +
T Consensus 163 ~~~~vlV~g~--g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~-----------------------g~-~~~--i 212 (333)
T cd08296 163 PGDLVAVQGI--GGLGHLAVQYAAKMG--FRTVAISRGSDKADLARKL-----------------------GA-HHY--I 212 (333)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHc-----------------------CC-cEE--e
Confidence 3567777784 555555555554454 5788888876544433321 11 111 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.....+..+.+..+ ..+|+++ |+.- .. ..++..++.|+++|.++.
T Consensus 213 ~~~~~~~~~~~~~~-~~~d~vi-~~~g--~~--~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 213 DTSKEDVAEALQEL-GGAKLIL-ATAP--NA--KAISALVGGLAPRGKLLI 257 (333)
T ss_pred cCCCccHHHHHHhc-CCCCEEE-ECCC--ch--HHHHHHHHHcccCCEEEE
Confidence 11111222223333 2478876 4321 12 467788899999998774
No 480
>PRK06234 methionine gamma-lyase; Provisional
Probab=32.19 E-value=3.5e+02 Score=26.72 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=24.8
Q ss_pred CCcEeEEEEcCCCCCCcHHHHHHHHHccCCC---CeEEEEEcCCC
Q 041517 249 GVVGDLIEIDAGHDFNSAWADINRAWRILRP---GGVIFGHDYFT 290 (327)
Q Consensus 249 ~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~p---GGvIi~dD~~~ 290 (327)
...-++|++..-+.......+++.+.++.+. |.++++|+...
T Consensus 147 ~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~ 191 (400)
T PRK06234 147 KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFC 191 (400)
T ss_pred ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCC
Confidence 3456789987544222223345555555544 77888888765
No 481
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=32.07 E-value=1.1e+02 Score=29.35 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
+-..+.+.......+=+++|+|.+..-+++++|.+.+..+|+++|+...
T Consensus 157 ~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~ 205 (317)
T TIGR02991 157 LGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERG 205 (317)
T ss_pred HHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCc
Confidence 3344444443223455678889988889999888888999999999643
No 482
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=31.79 E-value=1.8e+02 Score=27.85 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 143 YGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 143 ~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
||-.-..|.+..+.-.-|=+-.|.|....-.|-+.+.+.|+.+||++++...
T Consensus 160 qgTiA~ElleqVg~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a 211 (323)
T KOG1251|consen 160 QGTIALELLEQVGEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAA 211 (323)
T ss_pred cchHHHHHHHhhCccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCccc
Confidence 3444445555556544444444445444444444557899999999999654
No 483
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=31.74 E-value=86 Score=28.03 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=29.0
Q ss_pred cCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC
Q 041517 138 KGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR 193 (327)
Q Consensus 138 ~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~ 193 (327)
..|++.++ +.++..+|+=||||.=.+ .+|..+...+ -++++.+|.+.
T Consensus 9 ~~~g~~~q------~kl~~~~VlviG~GglGs--~ia~~La~~G-v~~i~lvD~d~ 55 (202)
T TIGR02356 9 PDIGEEGQ------QRLLNSHVLIIGAGGLGS--PAALYLAGAG-VGTIVIVDDDH 55 (202)
T ss_pred hhcCHHHH------HHhcCCCEEEECCCHHHH--HHHHHHHHcC-CCeEEEecCCE
Confidence 35765442 244678999999964333 3333332344 47899999975
No 484
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=31.68 E-value=3.4e+02 Score=25.95 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhc----cCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTR----QLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r----~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
..++..+......++|+=||| |..++.+|..++ ..+...+|+.++...-+......... .+.
T Consensus 133 ~~~~~~~~~~~~~~~vvVvG~--G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~------------~~~ 198 (364)
T TIGR03169 133 EALLESADAPPGTKRLAVVGG--GAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRR------------LVL 198 (364)
T ss_pred HHHHHHHhcCCCCceEEEECC--CHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHH------------HHH
Q ss_pred HHHhhhccCCcccceEeeecchhhhh--------hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKL--------CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L--------~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
+.+...+ |++..+.....+ ....-.+|+|++-.....+. .+...--.+.++|.|.+|+....
T Consensus 199 ~~l~~~g-------V~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~---~l~~~gl~~~~~g~i~vd~~l~~ 268 (364)
T TIGR03169 199 RLLARRG-------IEVHEGAPVTRGPDGALILADGRTLPADAILWATGARAPP---WLAESGLPLDEDGFLRVDPTLQS 268 (364)
T ss_pred HHHHHCC-------CEEEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhh---HHHHcCCCcCCCCeEEECCcccc
Q ss_pred CCchhH
Q 041517 292 ADNRGV 297 (327)
Q Consensus 292 ~~~~GV 297 (327)
.+.++|
T Consensus 269 ~~~~~I 274 (364)
T TIGR03169 269 LSHPHV 274 (364)
T ss_pred CCCCCE
No 485
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=31.55 E-value=2.2e+02 Score=24.01 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=42.3
Q ss_pred EeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC-chhHHHHHHHHHHHcCCeEEEccc
Q 041517 252 GDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD-NRGVRRAVNLFAKINGLKVQIDGQ 317 (327)
Q Consensus 252 fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-~~GV~~Av~~f~~~~gl~v~~~gq 317 (327)
++-||.|.......-...|..++..+++|-+|++.+..+-.. ....-..+.+++...|+.+.....
T Consensus 32 ~~~i~~d~~SG~~~~Rp~~~~ll~~~~~gd~lvv~~ldRl~R~~~~~~~~~~~~l~~~gv~l~~i~~ 98 (146)
T cd03767 32 IAGFYVENASGAKLDRPELFRLLDDAQSGDVLLVEQIDRLSRLPLDDWETLKASIAAKGLRVVSLDL 98 (146)
T ss_pred EEEEEEECCcCCCCCCHHHHHHHHHhhCCCEEEEEeCccccCCCHHHHHHHHHHHHHCCcEEEEeec
Confidence 455777753222222467888888999999999999877221 122223455667888998876543
No 486
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=31.32 E-value=2e+02 Score=28.00 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=27.5
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
.+..++|.=||+ |..+..+|+.++. .+.+|+++|.++.
T Consensus 143 ~l~g~~VgIIG~--G~IG~~vA~~L~~--~G~~V~~~d~~~~ 180 (330)
T PRK12480 143 PVKNMTVAIIGT--GRIGAATAKIYAG--FGATITAYDAYPN 180 (330)
T ss_pred ccCCCEEEEECC--CHHHHHHHHHHHh--CCCEEEEEeCChh
Confidence 345678888998 6666666776553 3689999998764
No 487
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=31.27 E-value=1.4e+02 Score=29.80 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=28.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
.+++|+=||+ |..++.+|..++.. +.+|+.|+..+.
T Consensus 157 ~~~~v~ViGg--G~~g~E~A~~l~~~--g~~Vtli~~~~~ 192 (441)
T PRK08010 157 LPGHLGILGG--GYIGVEFASMFANF--GSKVTILEAASL 192 (441)
T ss_pred cCCeEEEECC--CHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 4678888987 78999999887654 578888887654
No 488
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=31.21 E-value=58 Score=29.52 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=30.0
Q ss_pred ccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEEEccceEEEec
Q 041517 275 RILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWVIHS 323 (327)
Q Consensus 275 ~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~~gq~w~i~~ 323 (327)
.-.++|++.++.|-.+ .+....++.+..+++-.+++....|..|.|.+
T Consensus 139 ~~~~~g~l~lLpd~k~-~d~~~a~~sl~RLa~~~~fe~lLvGdGwpi~~ 186 (199)
T PF14597_consen 139 RSHPAGSLSLLPDEKL-YDPTEARASLRRLAAYPDFEWLLVGDGWPIFR 186 (199)
T ss_dssp EBSSTTS-EE--GGG--S-HHHHHHHHHHHHT-TT--EEEESBB--B-S
T ss_pred eecCCCCeEECChHHc-CCHHHHHHHHHHHhccccccEEeecCCchhhh
Confidence 3456777777777766 45677999999999988999999999999864
No 489
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=31.15 E-value=3.7e+02 Score=24.95 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChh
Q 041517 155 RPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPG 197 (327)
Q Consensus 155 ~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~ 197 (327)
....||=+|++ .|..++.+|+. . +.++++++..+...+
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~---~--G~~v~~~~~~~~~~~ 200 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARA---M--GFETVAITRSPDKRE 200 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---C--CCEEEEEeCCHHHHH
Confidence 34677778875 45555555553 3 467888887665433
No 490
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=30.97 E-value=1.2e+02 Score=29.92 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=32.8
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
-..+=+++|+|.+..-+++.++...++.+|++||+...
T Consensus 217 ~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~ 254 (368)
T PLN02556 217 VDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAES 254 (368)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCC
Confidence 46777899999999899999988888999999999664
No 491
>PLN02565 cysteine synthase
Probab=30.92 E-value=1.3e+02 Score=28.97 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=32.6
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
-..+=+++|+|.+..-+++.++.+.++.+|+++|+...
T Consensus 173 ~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s 210 (322)
T PLN02565 173 VDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVES 210 (322)
T ss_pred CCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 46677888889998899999999999999999999653
No 492
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=30.72 E-value=54 Score=25.74 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHhhhccccCCCCC
Q 041517 26 PTAYIILLLLSYALGYLSSPKPH 48 (327)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~ 48 (327)
-++|+.|++|-+...++|.-.+.
T Consensus 20 ~~VF~fL~lLi~~~~l~~~~~~~ 42 (85)
T PRK03814 20 GVVFIFLTLLVYLVQLMSKLIPQ 42 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 46888999999999888875533
No 493
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=30.67 E-value=2.5e+02 Score=28.53 Aligned_cols=132 Identities=13% Similarity=0.098 Sum_probs=68.8
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|--||- ||-++.+|.++. ..+-+|+++|+++.-.+.-.+-.. ..-++... ..++.+...|. .+.
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA--~~G~~ViG~DIn~~~Vd~ln~G~~---~i~e~~~~-~~v~~~v~~g~------lra 75 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFA--SAGFKVIGVDINQKKVDKLNRGES---YIEEPDLD-EVVKEAVESGK------LRA 75 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHH--HcCCceEeEeCCHHHHHHHhCCcc---eeecCcHH-HHHHHHHhcCC------ceE
Confidence 45666665 888888877642 337899999999875542211000 00011111 11222222221 222
Q ss_pred eecchhhhhhhcCCcEeEEEE------cCCCC--CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHH-HHHHHHHH
Q 041517 237 SSGSALTKLCEWGVVGDLIEI------DAGHD--FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRR-AVNLFAKI 307 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfI------Da~h~--~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~-Av~~f~~~ 307 (327)
... ..+ + ...|++.| +..++ ...+....+...+.|++|-++|+-.-.. ||.++ -+.-+.+.
T Consensus 76 Ttd-~~~-l----~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~----PGTTe~v~~plle~ 145 (436)
T COG0677 76 TTD-PEE-L----KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP----PGTTEEVVKPLLEE 145 (436)
T ss_pred ecC-hhh-c----ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC----CCcHHHHHHHHHhh
Confidence 221 111 1 13455554 22221 1235567788899999999999876654 77443 44444444
Q ss_pred -cCCeE
Q 041517 308 -NGLKV 312 (327)
Q Consensus 308 -~gl~v 312 (327)
.||.+
T Consensus 146 ~sgL~~ 151 (436)
T COG0677 146 RSGLKF 151 (436)
T ss_pred cCCCcc
Confidence 56665
No 494
>PRK07574 formate dehydrogenase; Provisional
Probab=30.65 E-value=2.8e+02 Score=27.70 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=27.9
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
+..++|.=||. |..+..+|+.++. -+.+|+++|....
T Consensus 190 L~gktVGIvG~--G~IG~~vA~~l~~--fG~~V~~~dr~~~ 226 (385)
T PRK07574 190 LEGMTVGIVGA--GRIGLAVLRRLKP--FDVKLHYTDRHRL 226 (385)
T ss_pred cCCCEEEEECC--CHHHHHHHHHHHh--CCCEEEEECCCCC
Confidence 45678888888 7788888887653 3789999998763
No 495
>PRK06608 threonine dehydratase; Provisional
Probab=30.51 E-value=1.2e+02 Score=29.60 Aligned_cols=47 Identities=6% Similarity=-0.073 Sum_probs=33.7
Q ss_pred HHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 148 GNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 148 ~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
..+.+..+ .-..+=++||+|.+..-++..++..++..+|+++|+...
T Consensus 162 ~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~ 209 (338)
T PRK06608 162 YEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNA 209 (338)
T ss_pred HHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCC
Confidence 33444443 224566788888888888888888888999999999654
No 496
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=30.49 E-value=3.5e+02 Score=24.26 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=23.8
Q ss_pred cCCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCC
Q 041517 154 VRPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGW 195 (327)
Q Consensus 154 ~~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~ 195 (327)
.+...||=.|. +.|..++.+|+. + +.++++++..++.
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~---~--g~~v~~~~~~~~~ 173 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKA---L--GATVIGTVSSEEK 173 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHH---c--CCEEEEEcCCHHH
Confidence 34577888884 455566666664 3 5678888765543
No 497
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=30.37 E-value=3.4e+02 Score=23.02 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=56.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|-=||+ |..+..||+.+. ..+.+|+..|.+++..+ + +...+ +..
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~--~~g~~v~~~d~~~~~~~---~--------------------~~~~g-------~~~- 47 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLA--KAGYEVTVYDRSPEKAE---A--------------------LAEAG-------AEV- 47 (163)
T ss_dssp EEEEE----SHHHHHHHHHHH--HTTTEEEEEESSHHHHH---H--------------------HHHTT-------EEE-
T ss_pred EEEEEch--HHHHHHHHHHHH--hcCCeEEeeccchhhhh---h--------------------hHHhh-------hhh-
Confidence 4555677 778888887653 34788999998653221 1 11111 111
Q ss_pred ecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHH--HHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINR--AWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~--~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
..+..+... ..|+|++=-.. ...+.+-+.. +.+.|++|.++|-..-.. |...+.+.+.+...|...
T Consensus 48 ~~s~~e~~~----~~dvvi~~v~~-~~~v~~v~~~~~i~~~l~~g~iiid~sT~~----p~~~~~~~~~~~~~g~~~ 115 (163)
T PF03446_consen 48 ADSPAEAAE----QADVVILCVPD-DDAVEAVLFGENILAGLRPGKIIIDMSTIS----PETSRELAERLAAKGVRY 115 (163)
T ss_dssp ESSHHHHHH----HBSEEEE-SSS-HHHHHHHHHCTTHGGGS-TTEEEEE-SS------HHHHHHHHHHHHHTTEEE
T ss_pred hhhhhhHhh----cccceEeeccc-chhhhhhhhhhHHhhccccceEEEecCCcc----hhhhhhhhhhhhhcccee
Confidence 112223222 24777764322 1234445555 778888888887544433 555566666666666543
No 498
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.33 E-value=1.7e+02 Score=28.14 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=56.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCcccce
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~~V 234 (327)
-+.||-+|| |.-|...-- ..+.+.+++=||. |+..++.++. +........ .-+.+++
T Consensus 93 ~~qvViLga--GLDTRayRl---~~~~~~~vfEvD~-Pevi~~K~~~----------------l~e~~~~~~~~~~~Va~ 150 (297)
T COG3315 93 IRQVVILGA--GLDTRAYRL---DWPKGTRVFEVDL-PEVIEFKKKL----------------LAERGATPPAHRRLVAV 150 (297)
T ss_pred ccEEEEecc--ccccceeec---CCCCCCeEEECCC-cHHHHHHHHH----------------hhhcCCCCCceEEEEec
Confidence 689999999 555443221 1233566776666 2333332221 111110000 1123456
Q ss_pred EeeecchhhhhhhcC---CcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWG---VVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~---~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+...+-.+.|..-+ ..--++...|-..| +.+.+-|..+..++.||..|+++-
T Consensus 151 Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 151 DLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred cccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 665555555555321 23336666666655 334556777777777777777664
No 499
>PRK08198 threonine dehydratase; Provisional
Probab=30.29 E-value=1.1e+02 Score=30.35 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=33.9
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
..+.+..+.-..+=+++|+|.+..-++..+|.+.++.+|+++|+...
T Consensus 162 ~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~ 208 (404)
T PRK08198 162 LEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGA 208 (404)
T ss_pred HHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 34444433223455677778888888888888899999999999653
No 500
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=30.24 E-value=2.1e+02 Score=26.84 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=21.6
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcE-EEEEeCCCCC
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQ-ILCIDDFRGW 195 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~-V~~ID~~~~~ 195 (327)
+..+||-.|++. |..++.+|+. + +.+ +++++..+..
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~---~--G~~~v~~~~~~~~~ 196 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKI---L--GAKRVIAVDIDDEK 196 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCCEEEEEcCCHHH
Confidence 456788888643 4455555553 4 344 8888776543
Done!