BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041518
(765 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/454 (52%), Positives = 317/454 (69%), Gaps = 18/454 (3%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
I+++L+ANRGEIA R+MR+A+ LGI +VAV+SD DR + HV AD A+ +G SYL
Sbjct: 8 IQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYL 67
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
G I+ AA+ +GAQAIHPGYGFLSE+ADFA+ C + GL F+GPP +AI MG KSA+K
Sbjct: 68 RGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKA 127
Query: 157 IMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSF 216
+M AGVPLVPGYHG QD++ + EA +IGYP+L+K GGGGKGM++V+ + ++
Sbjct: 128 LMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEAL 187
Query: 217 LGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEE 276
AQREA A+FG +L+EKY+ +PRH+E+Q+F D++G L+L ERDCS+QRRHQK++EE
Sbjct: 188 SSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEE 247
Query: 277 APAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVT 336
APAP + + R +G+AAV AA+A+ Y AGTVEF++D QF+FMEMNTRLQVEHPVT
Sbjct: 248 APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RGQFFFMEMNTRLQVEHPVT 306
Query: 337 EMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHP 396
E I DLV WQIRVA GE LPL+Q +VPL GHA E R+YAE+ FLPA+G L Y
Sbjct: 307 EAITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAEDPEGDFLPASGRLMLYRE 366
Query: 397 VPVSSKAVRVETGVEQGDTVSMHYDPMIANL--W--------------YGAKTVAGVPTN 440
+ RV++GV +GD VS YDPM+A L W +V G+ TN
Sbjct: 367 A-AAGPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVGGLRTN 425
Query: 441 INFLQKLAKHRAFESGDVETHFIEQHKDELFVKP 474
+ FL+++ H AF + +++T FI +H+D+L P
Sbjct: 426 LAFLRRILGHPAFAAAELDTGFIARHQDDLLPAP 459
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVS 709
G + +PM G +V+VL G VE G ++VLEAMKMEH ++AP GVV L + G+ V
Sbjct: 583 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVE 642
Query: 710 DGSVLFRL 717
+G+ L L
Sbjct: 643 EGTPLVEL 650
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 285/720 (39%), Positives = 395/720 (54%), Gaps = 82/720 (11%)
Query: 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNG 98
KILIANRGEIA R+++TA+++GI TVA+YSDAD+ +LHV+ ADEA+ IGPPPA SY+
Sbjct: 4 KILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVI 63
Query: 99 SSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIM 158
++ A TGAQA+HPGYGFLSE++ FA+ G+ F+GPP AI MGDK SK+I
Sbjct: 64 DKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIA 123
Query: 159 GAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLG 218
A V VPGY G +D D + +IGYP++IK + GGGGKGMRI + + + F
Sbjct: 124 QEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQS 183
Query: 219 AQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAP 278
++ EAA SFG + I +EK++TQPRHIE+Q+ D +G ++L ER+CS+QRR+QK++EEAP
Sbjct: 184 SKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAP 243
Query: 279 APNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEM 338
+P + R +G+ AV+ AKAV Y +AGTVEFIVD FYF+EMNTRLQVEHPVTE+
Sbjct: 244 SPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKNFYFLEMNTRLQVEHPVTEL 302
Query: 339 IVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHP-- 396
I DLVE IRVA GEPL ++Q +V L G A E R+YAE+ +GFLP+ G L Y P
Sbjct: 303 ITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPA 362
Query: 397 ----------------VPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGAKT------- 433
P AVR +TGV +G +SM+YDPMIA L A T
Sbjct: 363 ETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAKLCTWAPTRAAAIEA 422
Query: 434 ---------VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAEMNS 484
V G+ N+ FL + H F SGD+ T FI + E F + V+
Sbjct: 423 MRIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGF----EGVNLPETD 478
Query: 485 AARLSATLVAACIFEKEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHD 544
R++A A H + I T R+ +H RR+ EW
Sbjct: 479 LRRVAAAAAAM-----------------HRVAEIRRTRVSGRMDNHERRVGT-EW----- 515
Query: 545 DSGSKLLTLT-----VTYQADGNYLIEMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVH 599
++TL VT AD + +DGS + G+ + D + +
Sbjct: 516 -----VVTLQGADFPVTIAADHDGSTVSFDDGSSMRVTSDWTPGDQLANLMVDGAPLVLK 570
Query: 600 LAVYNKG-RIKXXXXXXXXXXXXFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAG 658
+ + G RI+ K+ + P + E + +L PM G
Sbjct: 571 VGKISGGFRIRTRGADL---------KVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPG 621
Query: 659 LVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718
L+VKV G +V+EGQ + +EAMKME++++A GVV + +AG ++ V+ +
Sbjct: 622 LIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
Length = 451
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/446 (47%), Positives = 284/446 (63%), Gaps = 18/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++K+LIANRGEIA RI+R + LGI+TVA+YS+ D+D+LH + ADEA +GP ++ SYL
Sbjct: 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYL 60
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ A TG +HPGYGFL+E+ADFA+LC L FIGP +I+ MG K +K
Sbjct: 61 NIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKA 120
Query: 157 IMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSF 216
M A VP+VPG G +D+ K A KIGYP++IK T GGGGKG+R+ + + F
Sbjct: 121 EMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGF 180
Query: 217 LGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEE 276
++EA +FG + +EK+I RHIE+QI GD YG V+HL ERDC++QRR QK++EE
Sbjct: 181 RMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEE 240
Query: 277 APAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVT 336
AP+P + + R +G AAV AAKAV+Y NAGT+EFI D ++FYFMEMNTR+QVEHPVT
Sbjct: 241 APSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVT 300
Query: 337 EMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHP 396
EM+ DLV+ Q++VA G+ LP Q ++ L GHA E RI AEN K F+P+ G + Y
Sbjct: 301 EMVTGIDLVKLQLQVAMGDVLPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIEQY-- 358
Query: 397 VPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGAKT----------------VAGVPTN 440
+ VR+E+ T+ +YD M+A L T V G+ T
Sbjct: 359 LAPGGYGVRIESACYTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGIDTT 418
Query: 441 INFLQKLAKHRAFESGDVETHFIEQH 466
I F KL + F SG T+F+EQ+
Sbjct: 419 IPFHIKLLNNDIFRSGKFNTNFLEQN 444
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/448 (46%), Positives = 289/448 (64%), Gaps = 20/448 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
+ K+L+ANRGEIA RI+R K LGI TVA+Y++ + + HVK ADEA IG P +YL
Sbjct: 2 VNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLD-TYL 60
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N I++ A+ GA AIHPGYGFL+E+A+FA++C + G+TFIGP I MGDK+ SK
Sbjct: 61 NKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKE 120
Query: 157 IMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSF 216
+M AGVP+VPG G + ++ K+ A +IGYP+L+K T GGGG+G+RI ++ + V ++
Sbjct: 121 VMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNY 180
Query: 217 LGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEE 276
A REA +FG +LLEK+I P+HIE Q+ GDK+G V+HL ERDCS+QRR+QK++E
Sbjct: 181 EQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEI 240
Query: 277 APAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVT 336
AP+ +T + R G AAK + Y+NAGT+EFI D YF+EMNTR+QVEHPV+
Sbjct: 241 APSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGNLYFIEMNTRIQVEHPVS 299
Query: 337 EMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHP 396
EM+ D+V+WQI++A GEPL + Q +V G+A E RI AE+ K F P+T V+ Y+
Sbjct: 300 EMVTGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYY- 358
Query: 397 VPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGAKT----------------VAGVPTN 440
VP +RVE +G V+ +YD MIA L A T + GV T
Sbjct: 359 VP-GGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVKTT 417
Query: 441 INFLQKLAKHRAFESGDVETHFIEQHKD 468
I L + K + F++G T ++E+H +
Sbjct: 418 IPLLINIMKEKDFKAGKFTTKYLEEHPE 445
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/446 (45%), Positives = 282/446 (63%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
+EK+LIANRGEIA RI+R K LGI+TVAV+S ADR+ +H+ ADE++ IGP PA SYL
Sbjct: 2 LEKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSYL 61
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
+I+ AA TGA AIHPGYGFL+E+ADFA+ +G TF+GP IR MGDK ++K
Sbjct: 62 QIPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKD 121
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G +D + + A ++GYP++IK GGGG+GMR+V ++ + S
Sbjct: 122 AMKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKS 181
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+FG + LEK++T PRH+EVQ+ D G +HL +RDCS+QRRHQK+IE
Sbjct: 182 AKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQRRHQKVIE 241
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP + R + V A + Y AGT EF+ + + +FYF+EMNTR+QVEHPV
Sbjct: 242 EAPAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFLYE--NGRFYFIEMNTRVQVEHPV 299
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
+EM+ D+V+ +R+A+GE L + Q +V + GHA E RI AE+ PK F+P+ G + H+H
Sbjct: 300 SEMVTGVDIVKEMLRIASGEKLSIRQEDVVIRGHALECRINAED-PKTFMPSPGKVKHFH 358
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIAN-LWYGAK---------------TVAGVPT 439
P VRV++ + G +V +YD ++ + YGA V G+ T
Sbjct: 359 -AP-GGNGVRVDSHLYSGYSVPPNYDSLVGKVITYGADRDEALARMRNALDELIVDGIKT 416
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N + L + AF G V H++E+
Sbjct: 417 NTELHKDLVRDAAFCKGGVNIHYLEK 442
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 360 bits (925), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 204/446 (45%), Positives = 280/446 (62%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++KI+IANRGEIA RI+R KRLGI+TVAV+S ADRD HV ADE + IGP P+ SYL
Sbjct: 22 LDKIVIANRGEIALRILRACKRLGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 81
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA TGA AIHPGYGFLSE+A+FA+ +G FIGP IR MGDK ++
Sbjct: 82 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 141
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G D+D ++ A +IGYP++IK + GGGG+GMR+V+ + S
Sbjct: 142 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 201
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+F + + +EKY+ PRH+E+Q+ D G ++L ERDCS+QRRHQK++E
Sbjct: 202 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 261
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP +T + R +G+ A + Y AGT EF+ + + +FYF+EMNTR+QVEHPV
Sbjct: 262 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPV 319
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
TEMI DL++ Q+R+A G+PL + Q EV + GHA E RI AE+ P FLP+ G + +H
Sbjct: 320 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAED-PNTFLPSPGKITRFH 378
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIANL-WYGAK---------------TVAGVPT 439
P VR E+ + G TV +YD MI L YG + G+ T
Sbjct: 379 -AP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKT 436
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N++ ++ F+ G H++E+
Sbjct: 437 NVDLQIRIMNDENFQHGGTNIHYLEK 462
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 359 bits (922), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 203/446 (45%), Positives = 279/446 (62%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++KI+IANRGEIA RI+R K LGI+TVAV+S ADRD HV ADE + IGP P+ SYL
Sbjct: 22 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 81
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA TGA AIHPGYGFLSE+A+FA+ +G FIGP IR MGDK ++
Sbjct: 82 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 141
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G D+D ++ A +IGYP++IK + GGGG+GMR+V+ + S
Sbjct: 142 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 201
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+F + + +EKY+ PRH+E+Q+ D G ++L ERDCS+QRRHQK++E
Sbjct: 202 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 261
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP +T + R +G+ A + Y AGT EF+ + + +FYF+EMNTR+QVEHPV
Sbjct: 262 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPV 319
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
TEMI DL++ Q+R+A G+PL + Q EV + GHA E RI AE+ P FLP+ G + +H
Sbjct: 320 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAED-PNTFLPSPGKITRFH 378
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIANL-WYGAK---------------TVAGVPT 439
P VR E+ + G TV +YD MI L YG + G+ T
Sbjct: 379 -AP-GGAGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKT 436
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N++ ++ F+ G H++E+
Sbjct: 437 NVDLQIRIMNDENFQHGGTNIHYLEK 462
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 359 bits (921), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 203/446 (45%), Positives = 279/446 (62%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++KI+IANRGEIA RI+R K LGI+TVAV+S ADRD HV ADE + IGP P+ SYL
Sbjct: 23 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 82
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA TGA AIHPGYGFLSE+A+FA+ +G FIGP IR MGDK ++
Sbjct: 83 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 142
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G D+D ++ A +IGYP++IK + GGGG+GMR+V+ + S
Sbjct: 143 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 202
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+F + + +EKY+ PRH+E+Q+ D G ++L ERDCS+QRRHQK++E
Sbjct: 203 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 262
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP +T + R +G+ A + Y AGT EF+ + + +FYF+EMNTR+QVEHPV
Sbjct: 263 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPV 320
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
TEMI DL++ Q+R+A G+PL + Q EV + GHA E RI AE+ P FLP+ G + +H
Sbjct: 321 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAED-PNTFLPSPGKITRFH 379
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIANL-WYGAK---------------TVAGVPT 439
P VR E+ + G TV +YD MI L YG + G+ T
Sbjct: 380 -AP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKT 437
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N++ ++ F+ G H++E+
Sbjct: 438 NVDLQIRIMNDENFQHGGTNIHYLEK 463
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 359 bits (921), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 203/446 (45%), Positives = 279/446 (62%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++KI+IANRGEIA RI+R K LGI+TVAV+S ADRD HV ADE + IGP P+ SYL
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA TGA AIHPGYGFLSE+A+FA+ +G FIGP IR MGDK ++
Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 121
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G D+D ++ A +IGYP++IK + GGGG+GMR+V+ + S
Sbjct: 122 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 181
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+F + + +EKY+ PRH+E+Q+ D G ++L ERDCS+QRRHQK++E
Sbjct: 182 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 241
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP +T + R +G+ A + Y AGT EF+ + + +FYF+EMNTR+QVEHPV
Sbjct: 242 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPV 299
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
TEMI DL++ Q+R+A G+PL + Q EV + GHA E RI AE+ P FLP+ G + +H
Sbjct: 300 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAED-PNTFLPSPGKITRFH 358
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIANL-WYGAK---------------TVAGVPT 439
P VR E+ + G TV +YD MI L YG + G+ T
Sbjct: 359 -AP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKT 416
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N++ ++ F+ G H++E+
Sbjct: 417 NVDLQIRIMNDENFQHGGTNIHYLEK 442
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 358 bits (920), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 203/446 (45%), Positives = 279/446 (62%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++KI+IANRGEIA RI+R K LGI+TVAV+S ADRD HV ADE + IGP P+ SYL
Sbjct: 5 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 64
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA TGA AIHPGYGFLSE+A+FA+ +G FIGP IR MGDK ++
Sbjct: 65 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 124
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G D+D ++ A +IGYP++IK + GGGG+GMR+V+ + S
Sbjct: 125 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 184
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+F + + +EKY+ PRH+E+Q+ D G ++L ERDCS+QRRHQK++E
Sbjct: 185 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 244
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP +T + R +G+ A + Y AGT EF+ + + +FYF+EMNTR+QVEHPV
Sbjct: 245 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPV 302
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
TEMI DL++ Q+R+A G+PL + Q EV + GHA E RI AE+ P FLP+ G + +H
Sbjct: 303 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAED-PNTFLPSPGKITRFH 361
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIANL-WYGAK---------------TVAGVPT 439
P VR E+ + G TV +YD MI L YG + G+ T
Sbjct: 362 -AP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKT 419
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N++ ++ F+ G H++E+
Sbjct: 420 NVDLQIRIMNDENFQHGGTNIHYLEK 445
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 358 bits (920), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 203/446 (45%), Positives = 279/446 (62%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++KI+IANRGEIA RI+R K LGI+TVAV+S ADRD HV ADE + IGP P+ SYL
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA TGA AIHPGYGFLSE+A+FA+ +G FIGP IR MGDK ++
Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 121
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G D+D ++ A +IGYP++IK + GGGG+GMR+V+ + S
Sbjct: 122 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 181
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+F + + +EKY+ PRH+E+Q+ D G ++L ERDCS+QRRHQK++E
Sbjct: 182 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 241
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP +T + R +G+ A + Y AGT EF+ + + +FYF+EMNTR+QVEHPV
Sbjct: 242 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPV 299
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
TEMI DL++ Q+R+A G+PL + Q EV + GHA E RI AE+ P FLP+ G + +H
Sbjct: 300 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAED-PNTFLPSPGKITRFH 358
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIANL-WYGAK---------------TVAGVPT 439
P VR E+ + G TV +YD MI L YG + G+ T
Sbjct: 359 -AP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKT 416
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N++ ++ F+ G H++E+
Sbjct: 417 NVDLQIRIMNDENFQHGGTNIHYLEK 442
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 357 bits (915), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 202/446 (45%), Positives = 279/446 (62%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++KI+IANRGEIA RI+R K LGI+TVAV+S ADRD HV ADE + IGP P+ SYL
Sbjct: 5 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 64
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA TGA AIHPGYGFLSE+A+FA+ +G FIGP IR MGDK ++
Sbjct: 65 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 124
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G D+D ++ A +IGYP++IK + GGGG+GMR+V+ + S
Sbjct: 125 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 184
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+F + + +EKY+ PRH+E+Q+ D G ++L ERDCS+QRRHQK++E
Sbjct: 185 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 244
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP +T + R +G+ A + Y AGT EF+ + + +FYF++MNTR+QVEHPV
Sbjct: 245 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIKMNTRIQVEHPV 302
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
TEMI DL++ Q+R+A G+PL + Q EV + GHA E RI AE+ P FLP+ G + +H
Sbjct: 303 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAED-PNTFLPSPGKITRFH 361
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIANL-WYGAK---------------TVAGVPT 439
P VR E+ + G TV +YD MI L YG + G+ T
Sbjct: 362 -AP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKT 419
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N++ ++ F+ G H++E+
Sbjct: 420 NVDLQIRIMNDENFQHGGTNIHYLEK 445
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 356 bits (914), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 202/446 (45%), Positives = 278/446 (62%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++KI+IANRGEIA RI+R K LGI+TVAV+S ADRD HV ADE + IGP P+ SYL
Sbjct: 2 LDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA TGA AIHPGYGFLSE+A+FA+ +G FIGP IR MGDK ++
Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 121
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G D+D ++ A +IGYP++IK + GGGG+GMR+V+ + S
Sbjct: 122 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 181
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+F + + +EKY+ PRH+E+Q+ D G ++L ERDCS+QRRHQK++E
Sbjct: 182 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 241
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP +T + R +G+ A + Y AGT EF+ + + +FYF+EMNTR+QV HPV
Sbjct: 242 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVAHPV 299
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
TEMI DL++ Q+R+A G+PL + Q EV + GHA E RI AE+ P FLP+ G + +H
Sbjct: 300 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAED-PNTFLPSPGKITRFH 358
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIANL-WYGAK---------------TVAGVPT 439
P VR E+ + G TV +YD MI L YG + G+ T
Sbjct: 359 -AP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKT 416
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N++ ++ F+ G H++E+
Sbjct: 417 NVDLQIRIMNDENFQHGGTNIHYLEK 442
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 356 bits (914), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 202/446 (45%), Positives = 278/446 (62%), Gaps = 22/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
++KI+IANRGEIA I+R K LGI+TVAV+S ADRD HV ADE + IGP P+ SYL
Sbjct: 5 LDKIVIANRGEIALEILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 64
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA TGA AIHPGYGFLSE+A+FA+ +G FIGP IR MGDK ++
Sbjct: 65 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIA 124
Query: 157 IMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
M AGVP VPG G D+D ++ A +IGYP++IK + GGGG+GMR+V+ + S
Sbjct: 125 AMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQS 184
Query: 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275
+ EA A+F + + +EKY+ PRH+E+Q+ D G ++L ERDCS+QRRHQK++E
Sbjct: 185 ISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 244
Query: 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335
EAPAP +T + R +G+ A + Y AGT EF+ + + +FYF+EMNTR+QVEHPV
Sbjct: 245 EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPV 302
Query: 336 TEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYH 395
TEMI DL++ Q+R+A G+PL + Q EV + GHA E RI AE+ P FLP+ G + +H
Sbjct: 303 TEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAED-PNTFLPSPGKITRFH 361
Query: 396 PVPVSSKAVRVETGVEQGDTVSMHYDPMIANL-WYGAK---------------TVAGVPT 439
P VR E+ + G TV +YD MI L YG + G+ T
Sbjct: 362 -AP-GGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKT 419
Query: 440 NINFLQKLAKHRAFESGDVETHFIEQ 465
N++ ++ F+ G H++E+
Sbjct: 420 NVDLQIRIMNDENFQHGGTNIHYLEK 445
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 355 bits (910), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 271/448 (60%), Gaps = 21/448 (4%)
Query: 33 KQQRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPAR 92
K++ E +LIANRGEIA RIM+T KR+GI++VAVYSD D+ S HV AD ++ + A
Sbjct: 27 KKKPFETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAA 86
Query: 93 LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKS 152
+YL+ I++AA +TGAQAI PGYGFLSE+ADF+ C + F+GP AIR +G K
Sbjct: 87 ETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKH 146
Query: 153 ASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF 212
+++ I A VPLVPG G +D K A K+ YP+++K T GGGG G++ V S +D
Sbjct: 147 SAREIAERAKVPLVPG-SGLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDI 205
Query: 213 VDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQK 272
F Q + + FG + +E+++ RH+E+Q+ GD +GK + + ERDCS+QRR+QK
Sbjct: 206 ERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQK 265
Query: 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332
+IEE PAPN+ RA + A+ + Y AGTVEFI D D+FYF+E+N RLQVE
Sbjct: 266 VIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVE 325
Query: 333 HPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLH 392
HP+TEM+ DLVEW +R+A + +++ + G + EAR+YAEN K F P+ G L
Sbjct: 326 HPITEMVTGLDLVEWMLRIAANDSPDFDNTKIEVSGASIEARLYAENPVKDFRPSPGQLT 385
Query: 393 HYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGAK----------------TVAG 436
V S A RV+T V++G VS YDP +A + K V G
Sbjct: 386 S---VSFPSWA-RVDTWVKKGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAVYG 441
Query: 437 VPTNINFLQKLAKHRAFESGDVETHFIE 464
TNI++L+ +A + F+ V T ++
Sbjct: 442 CITNIDYLRSIASSKMFKEAKVATKVLD 469
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 350 bits (897), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 280/467 (59%), Gaps = 32/467 (6%)
Query: 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP--PAR 92
++I+K+L+ANRGEIA RI R A L I TVA+YS+ D+ SLH ADE+ +G PA
Sbjct: 25 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 84
Query: 93 LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKS 152
SYLN I+D A + AIHPGYGFLSE+ FA+ C + G+ FIGP + + GDK
Sbjct: 85 -SYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 143
Query: 153 ASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF 212
++ A +P++PG G + +L K A + G+P++IK T GGGGKGMRIV+ ++
Sbjct: 144 KARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESEL 203
Query: 213 VDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQK 272
D+F A+ EA SFG + + +E+YI P+HIEVQ+ GD++G ++HL+ERDCSVQRRHQK
Sbjct: 204 EDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQK 263
Query: 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332
++E AP+ ++ R + AA+ + + Y NAGTVEF+V D+F+F+E+N R+QVE
Sbjct: 264 VVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEFFFIEVNPRVQVE 321
Query: 333 HPVTEMIVDQDLVEWQIRVANGEPL-------PLSQSEVPLLGHAFEARIYAENVPKGFL 385
H +TEM+ D+V+ QI VA G L P Q ++ LG+A + RI E+ F+
Sbjct: 322 HTITEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFM 380
Query: 386 PATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT----------- 433
P TG + Y VR++ G QG +S +YD ++ L A +
Sbjct: 381 PDTGTIIAYR--SSGGAGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRS 438
Query: 434 -----VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPS 475
+ GV TNI FL + K++ F SGD T FIE+ + ++PS
Sbjct: 439 LREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPS 485
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQV 708
P + + M G V +V + G V+ QP+L+ EAMKME ++AP GV+ + V G +
Sbjct: 1100 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTI 1159
Query: 709 SDGSVLFRLQ 718
+ G +L ++
Sbjct: 1160 ATGDLLIEIE 1169
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 349 bits (896), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 280/467 (59%), Gaps = 32/467 (6%)
Query: 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP--PAR 92
++I+K+L+ANRGEIA RI R A L I TVA+YS+ D+ SLH ADE+ +G PA
Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 61
Query: 93 LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKS 152
SYLN I+D A + AIHPGYGFLSE+ FA+ C + G+ FIGP + + GDK
Sbjct: 62 -SYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 120
Query: 153 ASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF 212
++ A +P++PG G + +L K A + G+P++IK T GGGGKGMRIV+ ++
Sbjct: 121 KARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESEL 180
Query: 213 VDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQK 272
D+F A+ EA SFG + + +E+YI P+HIEVQ+ GD++G ++HL+ERDCSVQRRHQK
Sbjct: 181 EDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQK 240
Query: 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332
++E AP+ ++ R + AA+ + + Y NAGTVEF+V D+F+F+E+N R+QVE
Sbjct: 241 VVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEFFFIEVNPRVQVE 298
Query: 333 HPVTEMIVDQDLVEWQIRVANGEPL-------PLSQSEVPLLGHAFEARIYAENVPKGFL 385
H +TEM+ D+V+ QI VA G L P Q ++ LG+A + RI E+ F+
Sbjct: 299 HTITEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFM 357
Query: 386 PATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT----------- 433
P TG + Y VR++ G QG +S +YD ++ L A +
Sbjct: 358 PDTGTIIAYR--SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRS 415
Query: 434 -----VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPS 475
+ GV TNI FL + K++ F SGD T FIE+ + ++PS
Sbjct: 416 LREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPS 462
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQV 708
P + + M G V +V + G V+ QP+L+ EAMKME ++AP GV+ + V G +
Sbjct: 1077 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTI 1136
Query: 709 SDGSVLFRLQ 718
+ G +L ++
Sbjct: 1137 ATGDLLIEIE 1146
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 349 bits (896), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 280/467 (59%), Gaps = 32/467 (6%)
Query: 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP--PAR 92
++I+K+L+ANRGEIA RI R A L I TVA+YS+ D+ SLH ADE+ +G PA
Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 61
Query: 93 LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKS 152
SYLN I+D A + AIHPGYGFLSE+ FA+ C + G+ FIGP + + GDK
Sbjct: 62 -SYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 120
Query: 153 ASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF 212
++ A +P++PG G + +L K A + G+P++IK T GGGGKGMRIV+ ++
Sbjct: 121 KARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESEL 180
Query: 213 VDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQK 272
D+F A+ EA SFG + + +E+YI P+HIEVQ+ GD++G ++HL+ERDCSVQRRHQK
Sbjct: 181 EDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQK 240
Query: 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332
++E AP+ ++ R + AA+ + + Y NAGTVEF+V D+F+F+E+N R+QVE
Sbjct: 241 VVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEFFFIEVNPRVQVE 298
Query: 333 HPVTEMIVDQDLVEWQIRVANGEPL-------PLSQSEVPLLGHAFEARIYAENVPKGFL 385
H +TEM+ D+V+ QI VA G L P Q ++ LG+A + RI E+ F+
Sbjct: 299 HTITEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFM 357
Query: 386 PATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT----------- 433
P TG + Y VR++ G QG +S +YD ++ L A +
Sbjct: 358 PDTGTIIAYR--SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRS 415
Query: 434 -----VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPS 475
+ GV TNI FL + K++ F SGD T FIE+ + ++PS
Sbjct: 416 LREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPS 462
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQV 708
P + + M G V +V + G V+ QP+L+ EAMKME ++AP GV+ + V G +
Sbjct: 1077 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTI 1136
Query: 709 SDGSVLFRLQ 718
+ G +L ++
Sbjct: 1137 ATGDLLIEIE 1146
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 349 bits (895), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 280/467 (59%), Gaps = 32/467 (6%)
Query: 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP--PAR 92
++I+K+L+ANRGEIA RI R A L I TVA+YS+ D+ SLH ADE+ +G PA
Sbjct: 2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 61
Query: 93 LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKS 152
SYLN I+D A + AIHPGYGFLSE+ FA+ C + G+ FIGP + + GDK
Sbjct: 62 -SYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 120
Query: 153 ASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF 212
++ A +P++PG G + +L K A + G+P++IK T GGGGKGMRIV+ ++
Sbjct: 121 KARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESEL 180
Query: 213 VDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQK 272
D+F A+ EA SFG + + +E+YI P+HIEVQ+ GD++G ++HL+ERDCSVQRRHQK
Sbjct: 181 EDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQK 240
Query: 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332
++E AP+ ++ R + AA+ + + Y NAGTVEF+V D+F+F+E+N R+QVE
Sbjct: 241 VVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEFFFIEVNPRVQVE 298
Query: 333 HPVTEMIVDQDLVEWQIRVANGEPL-------PLSQSEVPLLGHAFEARIYAENVPKGFL 385
H +TEM+ D+V+ QI VA G L P Q ++ LG+A + RI E+ F+
Sbjct: 299 HTITEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFM 357
Query: 386 PATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT----------- 433
P TG + Y VR++ G QG +S +YD ++ L A +
Sbjct: 358 PDTGTIIAYR--SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRS 415
Query: 434 -----VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPS 475
+ GV TNI FL + K++ F SGD T FIE+ + ++PS
Sbjct: 416 LREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPS 462
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQV 708
P + + M G V +V + G V+ QP+L+ EAMKME ++AP GV+ + V G +
Sbjct: 1077 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTI 1136
Query: 709 SDGSVLFRLQ 718
+ G +L ++
Sbjct: 1137 ATGDLLIEIE 1146
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 349 bits (895), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 280/467 (59%), Gaps = 32/467 (6%)
Query: 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP--PAR 92
++I+K+L+ANRGEIA RI R A L I TVA+YS+ D+ SLH ADE+ +G PA
Sbjct: 25 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 84
Query: 93 LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKS 152
SYLN I+D A + AIHPGYGFLSE+ FA+ C + G+ FIGP + + GDK
Sbjct: 85 -SYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 143
Query: 153 ASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF 212
++ A +P++PG G + +L K A + G+P++IK T GGGGKGMRIV+ ++
Sbjct: 144 KARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESEL 203
Query: 213 VDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQK 272
D+F A+ EA SFG + + +E+YI P+HIEVQ+ GD++G ++HL+ERDCSVQRRHQK
Sbjct: 204 EDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQK 263
Query: 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332
++E AP+ ++ R + AA+ + + Y NAGTVEF+V D+F+F+E+N R+QVE
Sbjct: 264 VVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEFFFIEVNPRVQVE 321
Query: 333 HPVTEMIVDQDLVEWQIRVANGEPL-------PLSQSEVPLLGHAFEARIYAENVPKGFL 385
H +TEM+ D+V+ QI VA G L P Q ++ LG+A + RI E+ F+
Sbjct: 322 HTITEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFM 380
Query: 386 PATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT----------- 433
P TG + Y VR++ G QG +S +YD ++ L A +
Sbjct: 381 PDTGTIIAYR--SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRS 438
Query: 434 -----VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPS 475
+ GV TNI FL + K++ F SGD T FIE+ + ++PS
Sbjct: 439 LREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPS 485
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQV 708
P + + M G V +V + G V+ QP+L+ EAMKME ++AP GV+ + V G +
Sbjct: 1100 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTI 1159
Query: 709 SDGSVLFRLQ 718
+ G +L ++
Sbjct: 1160 ATGDLLIEIE 1169
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 348 bits (894), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 280/467 (59%), Gaps = 32/467 (6%)
Query: 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP--PAR 92
++I+K+L+ANRGEIA RI R A L I TVA+YS+ D+ SLH ADE+ +G PA
Sbjct: 25 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 84
Query: 93 LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKS 152
SYLN I+D A + AIHPGYGFLSE+ FA+ C + G+ FIGP + + GDK
Sbjct: 85 -SYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 143
Query: 153 ASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF 212
++ A +P++PG G + +L K A + G+P++IK T GGGGKGMRIV+ ++
Sbjct: 144 KARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESEL 203
Query: 213 VDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQK 272
D+F A+ EA SFG + + +E+YI P+HIEVQ+ GD++G ++HL+ERDCSVQRRHQK
Sbjct: 204 EDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQK 263
Query: 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332
++E AP+ ++ R + AA+ + + Y NAGTVEF+V D+F+F+E+N R+QVE
Sbjct: 264 VVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEFFFIEVNPRVQVE 321
Query: 333 HPVTEMIVDQDLVEWQIRVANGEPL-------PLSQSEVPLLGHAFEARIYAENVPKGFL 385
H +TEM+ D+V+ QI VA G L P Q ++ LG+A + RI E+ F+
Sbjct: 322 HTITEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFM 380
Query: 386 PATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT----------- 433
P TG + Y VR++ G QG +S +YD ++ L A +
Sbjct: 381 PDTGTIIAYR--SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEEMVRS 438
Query: 434 -----VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPS 475
+ GV TNI FL + K++ F SGD T FIE+ + ++PS
Sbjct: 439 LREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPS 485
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQV 708
P + + M G V +V + G V+ QP+L+ EAMKME ++AP GV+ + V G +
Sbjct: 1100 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTI 1159
Query: 709 SDGSVLFRLQ 718
+ G +L ++
Sbjct: 1160 ATGDLLIEIE 1169
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 346 bits (888), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/467 (41%), Positives = 279/467 (59%), Gaps = 32/467 (6%)
Query: 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP--PAR 92
++I+K+L+ANRGEIA RI A L I TVA+YS+ D+ SLH ADE+ +G PA
Sbjct: 25 KQIKKLLVANRGEIAIRIFEAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAE 84
Query: 93 LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKS 152
SYLN I+D A + AIHPGYGFLSE+ FA+ C + G+ FIGP + + GDK
Sbjct: 85 -SYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKV 143
Query: 153 ASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF 212
++ A +P++PG G + +L K A + G+P++IK T GGGGKGMRIV+ ++
Sbjct: 144 KARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESEL 203
Query: 213 VDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQK 272
D+F A+ EA SFG + + +E+YI P+HIEVQ+ GD++G ++HL+ERDCSVQRRHQK
Sbjct: 204 EDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQK 263
Query: 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332
++E AP+ ++ R + AA+ + + Y NAGTVEF+V D+F+F+E+N R+QVE
Sbjct: 264 VVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVS--GDEFFFIEVNPRVQVE 321
Query: 333 HPVTEMIVDQDLVEWQIRVANGEPL-------PLSQSEVPLLGHAFEARIYAENVPKGFL 385
H +TEM+ D+V+ QI VA G L P Q ++ LG+A + RI E+ F+
Sbjct: 322 HTITEMVTGIDIVKTQILVAAGADLFGEEINMP-QQKDITTLGYAIQCRITTEDPLNDFM 380
Query: 386 PATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT----------- 433
P TG + Y VR++ G QG +S +YD ++ L A +
Sbjct: 381 PDTGTIIAYR--SSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRS 438
Query: 434 -----VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPS 475
+ GV TNI FL + K++ F SGD T FIE+ + ++PS
Sbjct: 439 LREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPS 485
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQV 708
P + + M G V +V + G V+ QP+L+ EAMKME ++AP GV+ + V G +
Sbjct: 1100 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTI 1159
Query: 709 SDGSVLFRLQ 718
+ G +L ++
Sbjct: 1160 ATGDLLIEIE 1169
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 335 bits (860), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 190/462 (41%), Positives = 277/462 (59%), Gaps = 29/462 (6%)
Query: 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARL- 93
+RI K+L+ANRGEIA R+ R LGIRTVA+YS D S H ADEA +G +
Sbjct: 4 RRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIE 63
Query: 94 SYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSA 153
+YL+ I++ A AIHPGYGFLSE+ FA+ C + G+ FIGP + + GDK
Sbjct: 64 AYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVK 123
Query: 154 SKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFV 213
++ AG+P++PG G ++ + + A GYPI+IK GGGG+GMRIV+S ++
Sbjct: 124 ARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVK 183
Query: 214 DSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKI 273
++F A+ EA A+FG + + +EK I P+HIEVQI GD G ++HLYERDCSVQRRHQK+
Sbjct: 184 EAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKV 243
Query: 274 IEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEH 333
+E AP+ +++ + R + +AAV ++V Y NAGTVEF+V D+FYF+E+N R+QVEH
Sbjct: 244 VEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVS--GDEFYFIEVNPRIQVEH 301
Query: 334 PVTEMIVDQDLVEWQIRVANGEPLPL------SQSEVPLLGHAFEARIYAENVPKGFLPA 387
+TEMI D+V+ QI +A+G L Q ++ + G+A ++R+ E+ F+P
Sbjct: 302 TITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPD 361
Query: 388 TGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT------------- 433
TG + Y VR++ G QG ++ +YD ++ L A T
Sbjct: 362 TGKIMAYR--SGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLR 419
Query: 434 ---VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFV 472
+ G+ TNI FL+ + +H F SG+ +T FI+ ELFV
Sbjct: 420 EFRIRGIKTNIPFLENVVQHPKFLSGEYDTSFIDT-TPELFV 460
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 332 bits (850), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 181/465 (38%), Positives = 269/465 (57%), Gaps = 33/465 (7%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPP--AR-- 92
I KIL+ANR EIA R+ R A LGI+TVA++++ D+ +LH ADE+ ++G P AR
Sbjct: 14 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 73
Query: 93 ---LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMG 149
SYL+ ++ A +GA AIHPGYG LSES +F C G+ FIGP +R +G
Sbjct: 74 GPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLG 133
Query: 150 DKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSP 209
+K A++ + + GVP+VP D+ + AA IGYP+++K + GGGG+GMR+++S
Sbjct: 134 NKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSE 193
Query: 210 NDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRR 269
D A+REA A+FG + + LEK + + RH+E QI GD +G V+HL+ERDCSVQRR
Sbjct: 194 ADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRR 253
Query: 270 HQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRL 329
+QK++E APAP ++ R L ++ A A +Y AGTVE+++D + +FYF+E+N R+
Sbjct: 254 NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRI 313
Query: 330 QVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVP------LLGHAFEARIYAENVPKG 383
QVEH VTE++ D+V+ QI + +G + QS VP L GHA + R+ E+
Sbjct: 314 QVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHN 373
Query: 384 FLPATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT--------- 433
F+P G + Y S +R++ G G ++ +YDP++ + A
Sbjct: 374 FIPDYGRITAYR--SASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMD 431
Query: 434 -------VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELF 471
+ GV TN+ FL+ + H F T FI+ ELF
Sbjct: 432 RALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTP-ELF 475
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 647 GPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQ 706
G V +PM G++ +V + G V G ++ +EAMKME + A G + + V AG
Sbjct: 1093 GNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD 1152
Query: 707 QVSDGSVL 714
Q+ +L
Sbjct: 1153 QIDAKDLL 1160
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 689 VKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQLAVH 727
V AP GV+ + V++GQ V+ G VL ++A+ ++ A+H
Sbjct: 1098 VGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIH 1136
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 332 bits (850), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 181/465 (38%), Positives = 269/465 (57%), Gaps = 33/465 (7%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPP--AR-- 92
I KIL+ANR EIA R+ R A LGI+TVA++++ D+ +LH ADE+ ++G P AR
Sbjct: 14 ISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDL 73
Query: 93 ---LSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMG 149
SYL+ ++ A +GA AIHPGYG LSES +F C G+ FIGP +R +G
Sbjct: 74 GPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLG 133
Query: 150 DKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSP 209
+K A++ + + GVP+VP D+ + AA IGYP+++K + GGGG+GMR+++S
Sbjct: 134 NKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSE 193
Query: 210 NDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRR 269
D A+REA A+FG + + LEK + + RH+E QI GD +G V+HL+ERDCSVQRR
Sbjct: 194 ADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRR 253
Query: 270 HQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRL 329
+QK++E APAP ++ R L ++ A A +Y AGTVE+++D + +FYF+E+N R+
Sbjct: 254 NQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRI 313
Query: 330 QVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEVP------LLGHAFEARIYAENVPKG 383
QVEH VTE++ D+V+ QI + +G + QS VP L GHA + R+ E+
Sbjct: 314 QVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHN 373
Query: 384 FLPATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIANLWYGAKT--------- 433
F+P G + Y S +R++ G G ++ +YDP++ + A
Sbjct: 374 FIPDYGRITAYR--SASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMD 431
Query: 434 -------VAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELF 471
+ GV TN+ FL+ + H F T FI+ ELF
Sbjct: 432 RALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTP-ELF 475
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 647 GPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQ 706
G V +PM G++ +V + G V G ++ +EAMKME + A G + + V AG
Sbjct: 1093 GNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD 1152
Query: 707 QVSDGSVL 714
Q+ +L
Sbjct: 1153 QIDAKDLL 1160
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 689 VKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQLAVH 727
V AP GV+ + V++GQ V+ G VL ++A+ ++ A+H
Sbjct: 1098 VGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIH 1136
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 322 bits (825), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 190/446 (42%), Positives = 269/446 (60%), Gaps = 21/446 (4%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL 96
I+ ILIANRGEIA R +RT K G + + VYS+AD+D+L++K AD +I IG + SYL
Sbjct: 6 IKSILIANRGEIALRALRTIKEXGKKAICVYSEADKDALYLKYADASICIGKARSSESYL 65
Query: 97 NGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR 156
N +I+ AA A AI PGYGFLSE+ +F ++C + + FIGP V A DKS +K+
Sbjct: 66 NIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAXNLXSDKSKAKQ 125
Query: 157 IMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSF 216
+ AGVP++PG G + K A +IGYP+++K GGGG+G R+V++ D ++
Sbjct: 126 VXQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGXRVVENEKDLEKAY 185
Query: 217 LGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEE 276
A+ EA +FG T EKYI PRHIEVQ+ GD +G V+H+ ERDCS QRRHQK+IEE
Sbjct: 186 WSAESEAXTAFGDGTXYXEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSXQRRHQKLIEE 245
Query: 277 APAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVT 336
+PA + R L + A+ AAKA+ Y AGT EF+VD D FYF+E NTRLQVEH V+
Sbjct: 246 SPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLD-FYFIEXNTRLQVEHCVS 304
Query: 337 EMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHP 396
E + D++E I+VA G LP SQ + L GH+ E RI AE+ K FLP+ G + Y
Sbjct: 305 EXVSGIDIIEQXIKVAEGYALP-SQESIKLNGHSIECRITAED-SKTFLPSPGKITKY-- 360
Query: 397 VPVSSKAVRVETGVEQGDTVSMHYDPMIANL--WYGAKT--------------VAGVPTN 440
+P + + VR E+ Q +V +YD I L W + ++G+ T
Sbjct: 361 IPPAGRNVRXESHCYQDYSVPAYYDSXIGKLVVWAEDRNKAIAKXKVALDELLISGIKTT 420
Query: 441 INFLQKLAKHRAFESGDVETHFIEQH 466
+F ++ F + + +T+++ +H
Sbjct: 421 KDFHLSXXENPDFINNNYDTNYLARH 446
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 236 bits (603), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 225/452 (49%), Gaps = 66/452 (14%)
Query: 5 LRRKPNDRSFILQSRLFSVSKSG--CKSDDKQQRIEKILIANRGEIAYRIMRTAKRL--- 59
L ++ DR I R F+V+ + IEK+LIAN G A + MR+ +R
Sbjct: 7 LVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMRSIRRWSYE 66
Query: 60 ------GIRTVAVYS--DADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQ 111
IR V + + D ++ ++K AD + + P +Y N I+D A R Q
Sbjct: 67 MFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQ 126
Query: 112 AIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPG--- 168
A+ G+G SE+ +L NG+ F+GPP A+ +GDK AS + AG+P +P
Sbjct: 127 AVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGS 186
Query: 169 -----YHGNE------------------QDIDLMKSEAAKIGYPILIKPTHGGGGKGMRI 205
+ N+ +D+D A ++GYP++IK + GGGGKG+R
Sbjct: 187 GLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRK 246
Query: 206 VQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCS 265
V + +DF + F Q E S I + + Q RH+EVQI D+YG + L+ RDCS
Sbjct: 247 VNNADDFPNLFRQVQAEVPGS----PIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCS 302
Query: 266 VQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEM 325
VQRRHQKIIEEAPA T + Q AV AK V Y +AGTVE++ + FYF+E+
Sbjct: 303 VQRRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLY-SQDGSFYFLEL 361
Query: 326 NTRLQVEHPVTEMIVDQDLVEWQIRVANGEPL-------------PLSQSEVPL------ 366
N RLQVEHP TEM+ D +L Q+++A G PL P S +
Sbjct: 362 NPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWGDSPIDFEDSAHV 421
Query: 367 ---LGHAFEARIYAENVPKGFLPATGVLHHYH 395
GH ARI +EN +GF P++G + +
Sbjct: 422 PCPRGHVIAARITSENPDEGFKPSSGTVQELN 453
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 208/419 (49%), Gaps = 65/419 (15%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLG---------IRTVAVYS--DADRDSLHVKSADEAIR 85
IEK+LIAN G A + MR+ +R IR V + + D ++ ++K AD +
Sbjct: 56 IEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVP 115
Query: 86 IGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAI 145
+ P +Y N IVD A R QA+ G+G SE+ +L NG+ F+GPP A+
Sbjct: 116 VPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAM 175
Query: 146 RDMGDKSASKRIMGAAGVPLVPGY---------------------------HGNEQDIDL 178
+GDK AS + VP +P G +D+D
Sbjct: 176 WALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 235
Query: 179 MKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYI 238
A +IG+P++IK + GGGGKG+R +S DF F Q E S I L K
Sbjct: 236 GLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLA 291
Query: 239 TQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAA 298
RH+EVQI D+YG + L+ RDCS+QRRHQKI+EEAPA + Q A+ A
Sbjct: 292 QHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLA 351
Query: 299 KAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPL- 357
K V Y +AGTVE++ + F+F+E+N RLQVEHP TEMI D +L Q+++A G PL
Sbjct: 352 KTVGYVSAGTVEYLY-SQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLH 410
Query: 358 -----------------PLS---QSEVPLL-GHAFEARIYAENVPKGFLPATGVLHHYH 395
P+S S PL GH ARI +EN +GF P++G + +
Sbjct: 411 RLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELN 469
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 208/419 (49%), Gaps = 65/419 (15%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLG---------IRTVAVYS--DADRDSLHVKSADEAIR 85
IEK+LIAN G A + MR+ +R IR V + + D ++ ++K AD +
Sbjct: 56 IEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVP 115
Query: 86 IGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAI 145
+ P +Y N IVD A R QA+ G+G SE+ +L NG+ F+GPP A+
Sbjct: 116 VPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAM 175
Query: 146 RDMGDKSASKRIMGAAGVPLVPGY---------------------------HGNEQDIDL 178
+GDK AS + VP +P G +D+D
Sbjct: 176 WALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 235
Query: 179 MKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYI 238
A +IG+P++IK + GGGGKG+R +S DF F Q E S I L K
Sbjct: 236 GLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLA 291
Query: 239 TQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAA 298
RH+EVQI D+YG + L+ RDCS+QRRHQKI+EEAPA + Q A+ A
Sbjct: 292 QHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLA 351
Query: 299 KAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPL- 357
K V Y +AGTVE++ + F+F+E+N RLQVEHP TEMI D +L Q+++A G PL
Sbjct: 352 KTVGYVSAGTVEYLY-SQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLH 410
Query: 358 -----------------PLS---QSEVPLL-GHAFEARIYAENVPKGFLPATGVLHHYH 395
P+S S PL GH ARI +EN +GF P++G + +
Sbjct: 411 RLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELN 469
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 208/419 (49%), Gaps = 65/419 (15%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLG---------IRTVAVYS--DADRDSLHVKSADEAIR 85
IEK+LIAN G A + MR+ +R IR V + + D ++ ++K AD +
Sbjct: 50 IEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVP 109
Query: 86 IGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAI 145
+ P +Y N IVD A R QA+ G+G SE+ +L NG+ F+GPP A+
Sbjct: 110 VPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAM 169
Query: 146 RDMGDKSASKRIMGAAGVPLVPGY---------------------------HGNEQDIDL 178
+GDK AS + VP +P G +D+D
Sbjct: 170 WALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 229
Query: 179 MKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYI 238
A +IG+P++IK + GGGGKG+R +S DF F Q E S I L K
Sbjct: 230 GLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLA 285
Query: 239 TQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAA 298
RH+EVQI D+YG + L+ RDCS+QRRHQKI+EEAPA + Q A+ A
Sbjct: 286 QHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLA 345
Query: 299 KAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPL- 357
K V Y +AGTVE++ + F+F+E+N RLQVEHP TEMI D +L Q+++A G PL
Sbjct: 346 KTVGYVSAGTVEYLY-SQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLH 404
Query: 358 -----------------PLS---QSEVPLL-GHAFEARIYAENVPKGFLPATGVLHHYH 395
P+S S PL GH ARI +EN +GF P++G + +
Sbjct: 405 RLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELN 463
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 208/419 (49%), Gaps = 65/419 (15%)
Query: 37 IEKILIANRGEIAYRIMRTAKRLG---------IRTVAVYS--DADRDSLHVKSADEAIR 85
IEK+LIAN G A + MR+ +R IR V + + D ++ ++K AD +
Sbjct: 40 IEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVP 99
Query: 86 IGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAI 145
+ P +Y N IVD A R QA+ G+G SE+ +L NG+ F+GPP A+
Sbjct: 100 VPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAM 159
Query: 146 RDMGDKSASKRIMGAAGVPLVPGY---------------------------HGNEQDIDL 178
+GDK AS + VP +P G +D+D
Sbjct: 160 WALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 219
Query: 179 MKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYI 238
A +IG+P++IK + GGGGKG+R +S DF F Q E S I L K
Sbjct: 220 GLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLA 275
Query: 239 TQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAA 298
RH+EVQI D+YG + L+ RDCS+QRRHQKI+EEAPA + Q A+ A
Sbjct: 276 QHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLA 335
Query: 299 KAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPL- 357
K V Y +AGTVE++ + F+F+E+N RLQVEHP TEMI D +L Q+++A G PL
Sbjct: 336 KTVGYVSAGTVEYLY-SQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLH 394
Query: 358 -----------------PLS---QSEVPLL-GHAFEARIYAENVPKGFLPATGVLHHYH 395
P+S S PL GH ARI +EN +GF P++G + +
Sbjct: 395 RLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELN 453
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 210/430 (48%), Gaps = 70/430 (16%)
Query: 29 KSDDKQQRIEKILIANRGEIAYRIMRTAKRLGIRT-----------VAVYSDADRDSLHV 77
KS I KILIAN G A + +R+ ++ T +A D + ++ ++
Sbjct: 39 KSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYI 98
Query: 78 KSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNG--L 135
+ AD+ I + +Y N IVD A R A+ G+G SE+ + + +
Sbjct: 99 RMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKV 158
Query: 136 TFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPG-------YHGNEQ------DIDLMKS- 181
FIGPP +A+R +GDK +S + +A VP +P H +E+ D D+ +
Sbjct: 159 IFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKG 218
Query: 182 ----------EAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINT 231
+A +IG+P++IK + GGGGKG+R V+ DF+ + A E S
Sbjct: 219 CCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----P 274
Query: 232 ILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLG 291
I + K + RH+EVQ+ D+YG + L+ RDCSVQRRHQKIIEEAP + +
Sbjct: 275 IFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEME 334
Query: 292 QAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRV 351
+AAV K V Y +AGTVE++ +FYF+E+N RLQVEHP TEM+ +L Q+++
Sbjct: 335 KAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQI 394
Query: 352 ANGEPL-------------PLSQSEVPL----------------LGHAFEARIYAENVPK 382
A G P+ P S SE+ GH RI +E+
Sbjct: 395 AMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPND 454
Query: 383 GFLPATGVLH 392
GF P+ G LH
Sbjct: 455 GFKPSGGTLH 464
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 210/430 (48%), Gaps = 70/430 (16%)
Query: 29 KSDDKQQRIEKILIANRGEIAYRIMRTAKRLGIRT-----------VAVYSDADRDSLHV 77
KS I KILIAN G A + +R+ ++ T +A D + ++ ++
Sbjct: 38 KSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYI 97
Query: 78 KSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNG--L 135
+ AD+ I + +Y N IVD A R A+ G+G SE+ + + +
Sbjct: 98 RMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKV 157
Query: 136 TFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPG-------YHGNEQ------DIDLMKS- 181
FIGPP +A+R +GDK +S + +A VP +P H +E+ D D+ +
Sbjct: 158 IFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKG 217
Query: 182 ----------EAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINT 231
+A +IG+P++IK + GGGGKG+R V+ DF+ + A E S
Sbjct: 218 CCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----P 273
Query: 232 ILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLG 291
I + K + RH+EVQ+ D+YG + L+ RDCSVQRRHQKIIEEAP + +
Sbjct: 274 IFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEME 333
Query: 292 QAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRV 351
+AAV K V Y +AGTVE++ +FYF+E+N RLQVEHP TEM+ +L Q+++
Sbjct: 334 KAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQI 393
Query: 352 ANGEPL-------------PLSQSEVPL----------------LGHAFEARIYAENVPK 382
A G P+ P S SE+ GH RI +E+
Sbjct: 394 AMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPND 453
Query: 383 GFLPATGVLH 392
GF P+ G LH
Sbjct: 454 GFKPSGGTLH 463
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa
Carboxylase Alpha Subunit
Length = 108
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 149 GDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQS 208
GDK SK + A V +PG+ G +D + A +IGYP++IK + GGGGKGMRI
Sbjct: 7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWD 66
Query: 209 PNDFVDSFLGAQREAAASFGINTILLEKYITQPRHI 244
+ D F + +EAA+SFG + +L+EK+I PRHI
Sbjct: 67 DEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHI 102
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVS 709
G + +P+AG V K+L +G V+ GQ +LVLEAMKME + APT G V + V V
Sbjct: 16 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQ 75
Query: 710 DGSVLFRL 717
G L ++
Sbjct: 76 GGQGLIKI 83
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVS 709
G + +P+AG V K+L +G V+ GQ +LVLEAMKME + APT G V + V V
Sbjct: 9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQ 68
Query: 710 DGSVLFRL 717
G L ++
Sbjct: 69 GGQGLIKI 76
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 652 VLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDG 711
V +PM G V++VL G +V GQ +LVLEAMKME+ + +P GVV + V G+ V G
Sbjct: 8 VSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTG 67
Query: 712 SVLFRL 717
L L
Sbjct: 68 QPLIEL 73
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 651 SVL-SPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVS 709
SVL SPM G+VV V G V EGQ I V+EAMKM++ + A TG V + AG V
Sbjct: 26 SVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVG 85
Query: 710 DGSVLFRLQ 718
+G +L L+
Sbjct: 86 EGDLLVELE 94
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVS 709
G + +PM G V+ + G KV +GQP+ VL AMKME VV +P G V + VT +
Sbjct: 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLE 709
Query: 710 DGSVLFRLQ 718
++ ++
Sbjct: 710 GDDLILEIE 718
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVS 709
G + +PM G V+ + G KV +GQP+ VL AMKME VV +P G V + VT +
Sbjct: 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLE 709
Query: 710 DGSVLFRLQ 718
++ ++
Sbjct: 710 GDDLILEIE 718
>pdb|2EJM|A Chain A, Solution Structure Of Ruh-072, An Apo-Biotnyl Domain Form
Human Acetyl Coenzyme A Carboxylase
Length = 99
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 643 ETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQV 702
ET GP L+PM G + KV G KV+ G ++V+ AMKMEH +K+P G V +
Sbjct: 12 ETQGGP----LAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFY 67
Query: 703 TAGQQVSDGSVLFRLQ 718
G Q + + L +
Sbjct: 68 REGAQANRHTPLVEFE 83
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 20/222 (9%)
Query: 140 PPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGG- 198
PP A+ D+ K GVP P +H + DL + ++G P L+K GG
Sbjct: 86 PPAKALEVAQDRLREKTFFQGLGVP-TPPFHPVDGPEDLEEG-LKRVGLPALLKTRRGGY 143
Query: 199 GGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLH 258
GKG +V++ + + EA + G ++LE ++ R + + + G+V
Sbjct: 144 DGKGQALVRTEEEAL--------EALKALGGRGLILEGFVPFDREVSLLAVRGRTGEVAF 195
Query: 259 LYERDCSVQRRHQKIIEE---APAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDT 315
V+ RH I APAP + + A+ A +A+ Y +EF
Sbjct: 196 Y----PLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFF--Q 249
Query: 316 VSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPL 357
V ++ F EM R+ T + E +R G PL
Sbjct: 250 VGEELLFNEMAPRVHNSGHWTIEGAETSQFENHLRAVLGLPL 291
>pdb|3V4Z|A Chain A, D-Alanine--D-Alanine Ligase From Yersinia Pestis
pdb|3V4Z|B Chain B, D-Alanine--D-Alanine Ligase From Yersinia Pestis
Length = 309
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 135 LTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSE-----AAKIGYP 189
L + G V A DK +K + A G+P+ P N Q + + E AK+G P
Sbjct: 84 LPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFETLSPEELVACVAKLGLP 143
Query: 190 ILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINT-ILLEKYITQPRHIEVQI 248
+++KP+H G GM V ++ Q+ +F ++ +L+EK+++ P V I
Sbjct: 144 LIVKPSHEGSSVGMSKVDHASEL-------QKALVEAFQHDSDVLIEKWLSGPE-FTVAI 195
Query: 249 FGDK 252
GD+
Sbjct: 196 LGDE 199
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLF 715
MAG + KV G ++E+GQ + +LE+MKME + A +G+V ++ G V++G VL
Sbjct: 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLL 65
Query: 716 RL 717
L
Sbjct: 66 EL 67
>pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
Ligase At 2.3 Angstroms Resolution
Length = 306
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 20/204 (9%)
Query: 134 GLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDI-----DLMKSEAAKIGY 188
GL + G V A DK SK + AG+P+ P + D +E + +G
Sbjct: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139
Query: 189 PILIKPTHGGGGKGMRIVQSPNDFVDSF-LGAQREAAASFGINTILLEKYITQPRHIEVQ 247
P+++KP+ G GM V + N D+ L Q + +L+EK+++ P V
Sbjct: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHD-------EEVLIEKWLSGP-EFTVA 191
Query: 248 IFGDKYGKVLHLYERDCSVQRRHQKIIEE----APAPNVTHDFRALLGQAAVSAAKAVSY 303
I G++ + + + + +E PA + A L + A +
Sbjct: 192 ILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGC 250
Query: 304 HNAGTVEFIVDTVSDQFYFMEMNT 327
G ++ ++D+ QFY +E NT
Sbjct: 251 KGWGRIDVMLDS-DGQFYLLEANT 273
>pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
Phosphoryl Phosphinate
Length = 306
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 20/204 (9%)
Query: 134 GLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDI-----DLMKSEAAKIGY 188
GL + G V A DK SK + AG+P+ P + D +E + +G
Sbjct: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139
Query: 189 PILIKPTHGGGGKGMRIVQSPNDFVDSF-LGAQREAAASFGINTILLEKYITQPRHIEVQ 247
P+++KP+ G GM V + N D+ L Q + +L+EK+++ P V
Sbjct: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHD-------EEVLIEKWLSGP-EFTVA 191
Query: 248 IFGDKYGKVLHLYERDCSVQRRHQKIIEE----APAPNVTHDFRALLGQAAVSAAKAVSY 303
I G++ + + + + +E PA + A L + A +
Sbjct: 192 ILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGC 250
Query: 304 HNAGTVEFIVDTVSDQFYFMEMNT 327
G ++ ++D+ QFY +E NT
Sbjct: 251 KGWGRIDVMLDS-DGQFYLLEANT 273
>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
Length = 307
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 23/143 (16%)
Query: 125 DFAQLC-----GDNG-----LTFIGPPVSAIRDMG-----DKSASKRIMGAAGVPLVPGY 169
DFA L G++G L +G P S + DK+ SK+I+ G+ P +
Sbjct: 57 DFALLALHGKYGEDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIE-TPDW 115
Query: 170 HGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGI 229
+ DL E K+G+P+++KP GG G++IV ++ + E +
Sbjct: 116 IELTKXEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISXL-----ETVFEWD- 169
Query: 230 NTILLEKYITQPRHIEVQIFGDK 252
+ +++EKYI + I IF K
Sbjct: 170 SEVVIEKYI-KGEEITCSIFDGK 191
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 31/210 (14%)
Query: 134 GLTFIGPPVSAIRDMGDKSASKRIMGAA--GVPLVPGYHGNEQDIDLMKSEAAKIGYPIL 191
G+T IG AI DK+ +R A + L G ++ + AA +G+P +
Sbjct: 112 GVTMIGATADAI----DKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCI 167
Query: 192 IKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGIN-----TILLEKYITQPRHIEV 246
I+P+ GG G I + +F E + G++ +L+++ + + E+
Sbjct: 168 IRPSFTMGGSGGGIAYNREEF---------EEICARGLDLSPTKELLIDESLIGWKEYEM 218
Query: 247 QIFGDKYGKVLHLYERDCSVQR------RHQKIIEEAPAPNVTHDFRALLGQAAVSAAKA 300
++ DK + + CS++ I APA +T ++ A+++ +
Sbjct: 219 EVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLRE 274
Query: 301 VSYHNAGT-VEFIVDTVSDQFYFMEMNTRL 329
+ G+ V+F V+ + + +EMN R+
Sbjct: 275 IGVETGGSNVQFAVNPKNGRLIVIEMNPRV 304
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 31/195 (15%)
Query: 176 IDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINT-ILL 234
I++ +A +IGYP++++P++ GG+ M IV D F + A S + +LL
Sbjct: 698 IEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYF-----QTAVSVSNDAPVLL 752
Query: 235 EKYITQPRHIEVQIFGDK----YGKVL--------HLYERDCSVQRRHQKIIEEAPAPNV 282
+ ++ ++V D G ++ H + CS+ PA +
Sbjct: 753 DHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYTL 801
Query: 283 THDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQ 342
+ + + ++ Q A + V+F V +++ Y +E+N R P
Sbjct: 802 SQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK--NNEVYLIEVNPRAARTVPFVSKATGV 859
Query: 343 DLVEWQIRVANGEPL 357
L + RV G+ L
Sbjct: 860 PLAKVAARVMAGKSL 874
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 31/210 (14%)
Query: 134 GLTFIGPPVSAIRDMGDKSASKRIMGAA--GVPLVPGYHGNEQDIDLMKSEAAKIGYPIL 191
G+T IG AI DK+ +R A + L G ++ + AA +G+P +
Sbjct: 112 GVTMIGATADAI----DKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCI 167
Query: 192 IKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGIN-----TILLEKYITQPRHIEV 246
I+P+ GG G I + +F E + G++ +L+++ + + E+
Sbjct: 168 IRPSFTMGGSGGGIAYNREEF---------EEICARGLDLSPTKELLIDESLIGWKEYEM 218
Query: 247 QIFGDKYGKVLHLYERDCSVQR------RHQKIIEEAPAPNVTHDFRALLGQAAVSAAKA 300
++ DK + + CS++ I APA +T ++ A+++ +
Sbjct: 219 EVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLRE 274
Query: 301 VSYHNAGT-VEFIVDTVSDQFYFMEMNTRL 329
+ G+ V+F V+ + + +EMN R+
Sbjct: 275 IGVETGGSNVQFAVNPKNGRLIVIEMNPRV 304
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 31/195 (15%)
Query: 176 IDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINT-ILL 234
I++ +A +IGYP++++P++ GG+ M IV D F + A S + +LL
Sbjct: 698 IEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYF-----QTAVSVSNDAPVLL 752
Query: 235 EKYITQPRHIEVQIFGDK----YGKVL--------HLYERDCSVQRRHQKIIEEAPAPNV 282
+ ++ ++V D G ++ H + CS+ PA +
Sbjct: 753 DHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYTL 801
Query: 283 THDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQ 342
+ + + ++ Q A + V+F V +++ Y +E+N R P
Sbjct: 802 SQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK--NNEVYLIEVNPRAARTVPFVSKATGV 859
Query: 343 DLVEWQIRVANGEPL 357
L + RV G+ L
Sbjct: 860 PLAKVAARVMAGKSL 874
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 31/210 (14%)
Query: 134 GLTFIGPPVSAIRDMGDKSASKRIMGAA--GVPLVPGYHGNEQDIDLMKSEAAKIGYPIL 191
G+T IG AI DK+ +R A + L G ++ + AA +G+P +
Sbjct: 112 GVTMIGATADAI----DKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCI 167
Query: 192 IKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGIN-----TILLEKYITQPRHIEV 246
I+P+ GG G I + +F E + G++ +L+++ + + E+
Sbjct: 168 IRPSFTMGGSGGGIAYNREEF---------EEICARGLDLSPTKELLIDESLIGWKEYEM 218
Query: 247 QIFGDKYGKVLHLYERDCSVQR------RHQKIIEEAPAPNVTHDFRALLGQAAVSAAKA 300
++ DK + + CS++ I APA +T ++ A+++ +
Sbjct: 219 EVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLRE 274
Query: 301 VSYHNAGT-VEFIVDTVSDQFYFMEMNTRL 329
+ G+ V+F V+ + + +EMN R+
Sbjct: 275 IGVETGGSNVQFAVNPKNGRLIVIEMNPRV 304
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 31/195 (15%)
Query: 176 IDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINT-ILL 234
I++ +A +IGYP++++ ++ GG+ M IV D F + A S + +LL
Sbjct: 698 IEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYF-----QTAVSVSNDAPVLL 752
Query: 235 EKYITQPRHIEVQIFGDK----YGKVL--------HLYERDCSVQRRHQKIIEEAPAPNV 282
+ ++ ++V D G ++ H + CS+ PA +
Sbjct: 753 DHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYTL 801
Query: 283 THDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQ 342
+ + + ++ Q A + V+F V +++ Y +E+N R P
Sbjct: 802 SQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK--NNEVYLIEVNPRAARTVPFVSKATGV 859
Query: 343 DLVEWQIRVANGEPL 357
L + RV G+ L
Sbjct: 860 PLAKVAARVMAGKSL 874
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 21/194 (10%)
Query: 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNG 98
++++ GE+ + +RLG+ +AV AD ++HV I + L+G
Sbjct: 13 RVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINM---------LDG 63
Query: 99 SSIVDAAIRTGAQAIHPGYGFLSE----SADFAQLCGDNGLTFIGPPVSAIRDMGDKSAS 154
A+R + P Y + E + D + GL + P A + ++
Sbjct: 64 D-----ALRRVVELEKPHY-IVPEIEAIATDMLIQLEEEGLNVV-PCARATKLTMNREGI 116
Query: 155 KRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVD 214
+R + A + L + L + A IGYP ++KP GKG ++S
Sbjct: 117 RR-LAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQ 175
Query: 215 SFLGAQREAAASFG 228
++ AQ+ A G
Sbjct: 176 AWKYAQQGGRAGAG 189
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 19/193 (9%)
Query: 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNG 98
++++ GE+ + +RLG+ +AV AD ++HV I + L+G
Sbjct: 14 RVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINM---------LDG 64
Query: 99 SSIVDAAIRTGAQAIHPGY---GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASK 155
A+R + P Y + + D + GL + P A + ++ +
Sbjct: 65 D-----ALRRVVELEKPHYIVPEIEAIATDMLIQLEEEGLNVV-PCARATKLTMNREGIR 118
Query: 156 RIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
R + A + L + L + A IGYP ++KP GKG ++S +
Sbjct: 119 R-LAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQA 177
Query: 216 FLGAQREAAASFG 228
+ AQ+ A G
Sbjct: 178 WKYAQQGGRAGAG 190
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 34/180 (18%)
Query: 49 AYRIMRTAKRLGIRTVAVYSDADRDSLHVKS---ADEAIRIGPPPARLSYLNGSSIVDAA 105
A +I++ AK G T+A + + L+ K AD I P L LN
Sbjct: 13 ALQILKGAKDEGFETIA-FGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNA-----VV 66
Query: 106 IRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPL 165
+ TG+ H G +L + + + G +R D++ ++ + AG+
Sbjct: 67 VPTGSFVAHLG----------IELVENMKVPYFGNK-RVLRWESDRNLERKWLKKAGI-R 114
Query: 166 VPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF---VDSFLGAQRE 222
VP + + DI+ P+++KP GGKG + + P DF + FLG +R+
Sbjct: 115 VPEVYEDPDDIE----------KPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRK 164
>pdb|3VPD|A Chain A, Lysx From Thermus Thermophilus Complexed With Amp-pnp
pdb|3VPD|B Chain B, Lysx From Thermus Thermophilus Complexed With Amp-pnp
Length = 281
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 135 LTFIGPPV----SAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPI 190
LT +G PV I GDK A+ + AG+P +++ L EA GYP+
Sbjct: 69 LTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEA--FGYPV 126
Query: 191 LIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQP-RHIEVQIF 249
++KP G G+ + + + L +E F +++Y+ +P R I V +
Sbjct: 127 VLKPVIGSWGR--LLAKVTDRAAAEALLEHKEVLGGFQHQLFYIQEYVEKPGRDIRVFVV 184
Query: 250 GDKYGKVLHLYERDC 264
G++ + +Y R
Sbjct: 185 GER--AIAAIYRRSA 197
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 71/345 (20%), Positives = 128/345 (37%), Gaps = 54/345 (15%)
Query: 134 GLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIK 193
GL GP A + G K+ +K M G+P + D + K K+G PI++K
Sbjct: 86 GLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTA--RYEVFTDFEKAKEYVEKVGAPIVVK 143
Query: 194 PTHGGGGKGMRI---VQSPNDFVDSFLGAQREAAASFGINTILLEKYI--TQPRHIEVQI 248
GKG + V+ + +D FL + +S +++E+++ + +I V I
Sbjct: 144 ADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSS---ERVVIEEFLEGEEASYI-VMI 199
Query: 249 FGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPN----------------VTHDFRALLGQ 292
GD+Y + H+++++E PN V R + +
Sbjct: 200 NGDRY--------VPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVE 251
Query: 293 AAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRL-QVEHPVTEMIVDQDLVEWQIRV 351
+ K + G + + + +E N RL E M V D +E +
Sbjct: 252 RVIKGLKEEGIYYRGFLYAGLMITKEGPKVLEFNVRLGDPEAQPILMRVKNDFLETLLNF 311
Query: 352 ANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATG-VLHHYHPVPVSSKAVRVETGV 410
G+ + + + E L +R Y E P TG ++H + V G
Sbjct: 312 YEGKDVHIKEDERYALDVVLASRGYPEK------PETGKIIHGLDYLKSMEDVVVFHAGT 365
Query: 411 EQGDTVSMHYDPMIANLWYGAKTVAGVPTNINFLQKLAKHRAFES 455
++ ++ + N+ KT+ K AK RA+E+
Sbjct: 366 KKEGNFTVTSGGRVLNVCAYGKTL-----------KEAKERAYEA 399
>pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
Length = 319
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 34/214 (15%)
Query: 126 FAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAK 185
F +L G ++G V+A DK SKR++ AGVP+VP + + ++ +
Sbjct: 94 FLELLGK---PYVGAGVAASALCXDKDLSKRVLAQAGVPVVPWVAVRKGEPPVVPFDPPF 150
Query: 186 IGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGI---NTILLEKYITQPR 242
+KP + G G+ V+ D EAA + ++EK ++ R
Sbjct: 151 F-----VKPANTGSSVGISRVERFQDL---------EAALALAFRYDEKAVVEKALSPVR 196
Query: 243 HIEVQIFGDKYGKV---------LHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQA 293
+EV + G+ +G+ Y+ + +++ AP T + + +
Sbjct: 197 ELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQE---TVQEL 253
Query: 294 AVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNT 327
A+ A K + V+F + + Y E+NT
Sbjct: 254 ALKAYKVLGVRGXARVDFFL--AEGELYLNELNT 285
>pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 360
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 137 FIGPPVSAIRDMGDKSASKRIMGAAGVPLVP-------GYHGNEQDIDLMKSEAAKIGYP 189
++G V + DK K++ G+P +P Y E +I +K K+ YP
Sbjct: 116 YVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNI--LKLVNDKLNYP 173
Query: 190 ILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIF 249
+ +KP + G G+ + + + +EA F + L+ + R IEV +
Sbjct: 174 VFVKPANLGSSVGISKCNNEAELKEGI----KEA---FQFDRKLVIEQGVNAREIEVAVL 226
Query: 250 GDKY------GKVLH-LYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVS 302
G+ Y G+V+ + D + + K+ + PA ++ D + L A+ A KA
Sbjct: 227 GNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPA-DLDEDVQLTLRNMALEAFKATD 285
Query: 303 YHNAGTVEFIVDTVSDQFYFMEMN 326
+F V T +Q Y E N
Sbjct: 286 CSGLVRADFFV-TEDNQIYINETN 308
>pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
D-Alanine:d-Alanine Ligase Revealed By Crystallographic
Studies
Length = 364
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 25/204 (12%)
Query: 137 FIGPPVSAIRDMGDKSASKRIMGAAGVPLVP-------GYHGNEQDIDLMKSEAAKIGYP 189
++G V + DK K++ G+P +P Y E +I +K K+ YP
Sbjct: 116 YVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNI--LKLVNDKLNYP 173
Query: 190 ILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIF 249
+ +KP + G G+ + + + +EA F + L+ + R IEV +
Sbjct: 174 VFVKPANLGSSVGISKCNNEAELKEGI----KEA---FQFDRKLVIEQGVNAREIEVAVL 226
Query: 250 GDKY------GKVLH-LYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVS 302
G+ Y G+V+ + D + + K+ + PA ++ D + L A+ A KA
Sbjct: 227 GNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPA-DLDEDVQLTLRNMALEAFKATD 285
Query: 303 YHNAGTVEFIVDTVSDQFYFMEMN 326
+F V T +Q Y E N
Sbjct: 286 CSGLVRADFFV-TEDNQIYINETN 308
>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORQ|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORR|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
pdb|3ORR|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
Length = 377
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 20/220 (9%)
Query: 144 AIRDMGDKSASKRIMGAAGVPLVPGYHGNEQ-DIDLMKSEAAKIGYPILIKPTHGG-GGK 201
AI+ + D+ K + +AG +VP E DID +GYP ++K GG GK
Sbjct: 104 AIQLLQDRLTEKETLKSAGTKVVPFISVKESTDID---KAIETLGYPFIVKTRFGGYDGK 160
Query: 202 GMRIVQSPNDFVDSF-LGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLY 260
G ++ + D + F L E A EKY+ + + + + ++
Sbjct: 161 GQVLINNEKDLQEGFKLIETSECVA---------EKYLNIKKEVSLTVTRGNNNQITFFP 211
Query: 261 ERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQF 320
++ + R+Q + + + D A + +++ + TVEF +D+ ++Q
Sbjct: 212 LQEN--EHRNQILFKTIVPARI--DKTAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NNQL 266
Query: 321 YFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLS 360
Y E+ R + D + I G+ LP S
Sbjct: 267 YVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNS 306
>pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
And D-Alanine:d-Alanine From Thermus Thermophius Hb8
pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
And D-Alanine:d-Alanine From Thermus Thermophius Hb8
Length = 319
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 34/214 (15%)
Query: 126 FAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAK 185
F +L G ++G V+A DK SKR++ AGVP+VP + + ++ +
Sbjct: 94 FLELLGK---PYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPPVVPFDPPF 150
Query: 186 IGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGI---NTILLEKYITQPR 242
+KP + G G+ V+ D EAA + ++EK ++ R
Sbjct: 151 F-----VKPANTGSSVGISRVERFQDL---------EAALALAFRYDEKAVVEKALSPVR 196
Query: 243 HIEVQIFGDKYGKV---------LHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQA 293
+EV + G+ +G+ Y+ + +++ AP T + + +
Sbjct: 197 ELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQE---TVQEL 253
Query: 294 AVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNT 327
A+ A K + V+F + + Y E+NT
Sbjct: 254 ALKAYKVLGVRGMARVDFFL--AEGELYLNELNT 285
>pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-alanine: D-alanine
Ligase (ddl) From Thermus Caldophilus: A Basis For The
Substrate-induced Conformational Changes
Length = 322
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 34/214 (15%)
Query: 126 FAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAK 185
F +L G ++G V+A DK SKR++ AGVP+VP + + ++ +
Sbjct: 97 FLELLGK---PYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPPVVPFDPPF 153
Query: 186 IGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGI---NTILLEKYITQPR 242
+KP + G G+ V+ D EAA + ++EK ++ R
Sbjct: 154 F-----VKPANTGSSVGISRVERFQDL---------EAALALAFRYDEKAVVEKALSPVR 199
Query: 243 HIEVQIFGDKYGKV---------LHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQA 293
+EV + G+ +G+ Y+ + +++ AP T + + +
Sbjct: 200 ELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQE---TVQEL 256
Query: 294 AVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNT 327
A+ A K + V+F + + Y E+NT
Sbjct: 257 ALKAYKVLGVRGMARVDFFL--AEGELYLNELNT 288
>pdb|1UC8|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC8|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 135 LTFIGPPV----SAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPI 190
LT +G PV I GDK A+ + AG+P +++ L EA GYP+
Sbjct: 69 LTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEA--FGYPV 126
Query: 191 LIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQP-RHIEVQIF 249
++KP G G+ + +E F +++Y+ +P R I V +
Sbjct: 127 VLKPVIGSWGR--LLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVV 184
Query: 250 GDKYGKVLHLYERDC 264
G++ + +Y R
Sbjct: 185 GER--AIAAIYRRSA 197
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 28/217 (12%)
Query: 27 GCKSDDKQQRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRI 86
G + D Q KIL+ GE+ I A+RLG+ VAV A+ ++ V
Sbjct: 12 GTATTDSAQ---KILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQV--------- 59
Query: 87 GPPPARLSY----LNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPV 142
A SY ++ + R AI P ++ A F + D F+ P
Sbjct: 60 ----AHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAINLDALF-EFEKDG--YFVVPNA 112
Query: 143 SAIR-DMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGK 201
A M + + ++ A VP + +D + KIGYP K GK
Sbjct: 113 RATWIAMHRERLRETLVKEAKVPTSRYMYAT--TLDELYEACEKIGYPCHTKAIMSSSGK 170
Query: 202 GMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYI 238
G V+ P D ++ A+ +A S I++E++I
Sbjct: 171 GSYFVKGPEDIPKAWEEAKTKARGS--AEKIIVEEHI 205
>pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|B Chain B, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|C Chain C, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|D Chain D, The Crystal Structure Of The D-alanyl-alanine Synthetase A
From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 364
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGV---PLVPGYHGNE 173
+G L E + L F+G V + DK +KR++ AG+ P + N
Sbjct: 107 HGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNR 166
Query: 174 QDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTIL 233
+ E +++G P+ +KP + G G+ V + + Q+ A +F + +
Sbjct: 167 HAFSFAEVE-SRLGLPLFVKPANQGSSVGVSKVANEAQY-------QQAVALAFEFDHKV 218
Query: 234 LEKYITQPRHIEVQIFGD 251
+ + + R IE + G+
Sbjct: 219 VVEQGIKGREIECAVLGN 236
>pdb|1IYU|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr,
Minimized Average Structure
pdb|1IYV|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, 29
Structures
Length = 79
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 658 GLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717
G V+++L G +E Q ++VLE+ K V +P GVV + V G ++ +G + L
Sbjct: 13 GEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIEL 72
Query: 718 Q 718
+
Sbjct: 73 E 73
>pdb|3VOT|A Chain A, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
pdb|3VOT|B Chain B, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
Length = 425
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 10/152 (6%)
Query: 52 IMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQ 111
I A+RLG++ Y+ A+ ++ + + + P P + + + +D +T +
Sbjct: 20 IFEEAERLGLKVTFFYNSAEDFPGNLPAVERCV---PLPL---FEDEEAAMDVVRQTFVE 73
Query: 112 AIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHG 171
G L E A L G P + + + +K+ ++ I+ G+ P +H
Sbjct: 74 FPFDGVMTLFEPALPFTAKAAEALNLPGLPFTTMENCRNKNKTRSILQQNGLN-TPVFHE 132
Query: 172 NEQDIDLMKSEAAKIGYPILIKPTHGGGGKGM 203
DL E K+ YP+++KP +G +G+
Sbjct: 133 FHTLADL---ENRKLSYPLVVKPVNGFSSQGV 161
>pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
From Salmonella Enterica Typhimurium Complexed With Adp
Length = 367
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGV---PLVPGYHGNE 173
+G L E L F+G V + DK +KR++ AG+ P + N
Sbjct: 110 HGTLGEDGSLQGXLRVANLPFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFITLTRTNR 169
Query: 174 QDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTIL 233
+ E +++G P+ +KP + G G+ V + + Q+ A +F + +
Sbjct: 170 HAFSFAEVE-SRLGLPLFVKPANQGSSVGVSKVANEAQY-------QQAVALAFEFDHKV 221
Query: 234 LEKYITQPRHIEVQIFGD 251
+ + + R IE + G+
Sbjct: 222 VVEQGIKGREIECAVLGN 239
>pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
D-Ala:d-Ala Ligase
Length = 364
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 137 FIGPPVSAIRDMGDKSASKRIMGAAGVPLVP-------GYHGNEQDIDLMKSEAAKIGYP 189
++G V + DK K++ G+P +P Y E +I +K K+ YP
Sbjct: 116 YVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNI--LKLVNDKLNYP 173
Query: 190 ILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIF 249
+ +KP + G G+ + + + +EA F + L+ + R IEV +
Sbjct: 174 VFVKPANLGSSVGISKCNNEAELKEGI----KEA---FQFDRKLVIEQGVNAREIEVAVL 226
Query: 250 GDKY------GKVLH-LYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVS 302
G+ Y G+V+ + D + + K+ + PA ++ D + L A+ A K
Sbjct: 227 GNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLKIPA-DLDEDVQLTLRNMALEAFKETD 285
Query: 303 YHNAGTVEFIVDTVSDQFYFMEMN 326
+F V T +Q Y E N
Sbjct: 286 CSGLVRADFFV-TEDNQIYINETN 308
>pdb|1UC9|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC9|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 135 LTFIGPPV----SAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPI 190
LT +G PV I GDK A+ + AG+P +++ L EA GYP+
Sbjct: 69 LTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEA--FGYPV 126
Query: 191 LIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQP-RHIEVQIF 249
++KP G G+ +E F +++Y+ +P R I V +
Sbjct: 127 VLKPVIGSWGR--LXXXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVV 184
Query: 250 GDKYGKVLHLYERDC 264
G++ + +Y R
Sbjct: 185 GER--AIAAIYRRSA 197
>pdb|1A6X|A Chain A, Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo-
Bccp87) Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr,
49 Structures
Length = 87
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 652 VLSPMAGLVVKVLAND-------GTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTA 704
V SPM G + + D G KV G + ++EAMKM + ++A +G V + V +
Sbjct: 14 VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 73
Query: 705 GQQV 708
GQ V
Sbjct: 74 GQPV 77
>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 82
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 652 VLSPMAGLVVKVLAND-------GTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTA 704
V SPM G + + D G KV G + ++EAMKM + ++A +G V + V +
Sbjct: 9 VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 68
Query: 705 GQQV 708
GQ V
Sbjct: 69 GQPV 72
>pdb|1BDO|A Chain A, Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A
Carboxylase Determined By Mad Phasing
pdb|2BDO|A Chain A, Solution Structure Of Holo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 80
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 652 VLSPMAGLVVKVLAND-------GTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTA 704
V SPM G + + D G KV G + ++EAMKM + ++A +G V + V +
Sbjct: 7 VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 66
Query: 705 GQQV 708
GQ V
Sbjct: 67 GQPV 70
>pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
From Mycobacterium Tuberculosis
Length = 373
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 107 RTGAQ--AIHPGYGFLSESAD--FAQLCGD-------------NGLTFIGPPVSAIRDMG 149
R G Q ++ PG G + ES D F L G G+ ++G V A
Sbjct: 91 RRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGM 150
Query: 150 DKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSP 209
DK +K+++ A G+P+ L + E ++G P+ +KP GG G+ V S
Sbjct: 151 DKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSW 210
Query: 210 NDFVDSFLGAQR 221
+ + A+R
Sbjct: 211 DQLPAAVARARR 222
>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase
From Anaerococcus Prevotii
Length = 403
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 23/181 (12%)
Query: 40 ILIANRGEIAYRIMRTAKRLGIRTVA-VYSDADRDSLHVKSADEAIRIGPPPA---RLSY 95
IL A RG++ + + AK LGI T+A +A + L++ I P ++
Sbjct: 12 ILGAGRGQLG--LYKAAKELGIHTIAGTXPNAHKPCLNLADEISYXDISNPDEVEQKVKD 69
Query: 96 LNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASK 155
LN + TG ++ A++C L +G A GDK K
Sbjct: 70 LNLDGAATCCLDTGIVSL-------------ARICDKENL--VGLNEEAAIXCGDKYKXK 114
Query: 156 RIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDS 215
V H ++ + +K+ + P+++K T G KG+ I + + +D
Sbjct: 115 EAFKKYNVN--TARHFVVRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDG 172
Query: 216 F 216
F
Sbjct: 173 F 173
>pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 133 NGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILI 192
+G+ F+G + + DKS + + AG+ + N+ D + AA YP+ +
Sbjct: 115 SGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDD----RPVAATFTYPVFV 170
Query: 193 KPTHGGGGKGMRIVQSPNDF 212
KP G G++ V S ++
Sbjct: 171 KPARSGSSFGVKKVNSADEL 190
>pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 133 NGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILI 192
+G+ F+G + + DKS + + AG+ + N+ D + AA YP+ +
Sbjct: 115 SGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDD----RPVAATFTYPVFV 170
Query: 193 KPTHGGGGKGMRIVQSPNDF 212
KP G G++ V S ++
Sbjct: 171 KPARSGSSFGVKKVNSADEL 190
>pdb|2K7V|A Chain A, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
pdb|2K7V|B Chain B, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
Length = 85
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 660 VVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLF 715
V +V+ G KV Q ++ +E K V AP GVV L+V G +V GS++
Sbjct: 13 VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM 68
>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase From
Escherichia Coli
Length = 80
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 660 VVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718
V +V+ G KV Q ++ +E K V AP GVV L+V G +V GS++ +
Sbjct: 17 VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFE 75
>pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From
Xanthomonas Oryzae Pathovar Oryzae With Adp
pdb|3R5F|A Chain A, Crystal Structure Of D-Alanine-D-Alnine Ligase From
Xanthomonas Oryzae Pv. Oryzae With Atp
Length = 384
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVP-----GYHG 171
+G L E L L F+G V DK +KR++ A + + P +
Sbjct: 124 HGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTA 183
Query: 172 NEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQS 208
D+D + A++G P+ +KP + G G+ V++
Sbjct: 184 AHADVDTL---IAQLGLPLFVKPANQGSSVGVSQVRT 217
>pdb|2IVF|A Chain A, Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
Length = 976
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 139 GPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGN--EQDIDLMKSEAAKIGYP 189
G PVS IR++G K A KR G YHG+ E+ + L + + G P
Sbjct: 422 GVPVSLIRELGRKVAKKRTCSYIGFSSAKSYHGDLMERSLFLAMALSGNWGKP 474
>pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From
Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 386
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVP-----GYHG 171
+G L E L L F+G V DK +KR++ A + + P +
Sbjct: 126 HGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTA 185
Query: 172 NEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQS 208
D+D + A++G P+ +KP + G G+ V++
Sbjct: 186 AHADVDTL---IAQLGLPLFVKPANQGSSVGVSQVRT 219
>pdb|1ZTP|A Chain A, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|B Chain B, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|C Chain C, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|2Q4K|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
Length = 251
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 27 GCKSDDKQQRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRI 86
G K D I + ++ R ++A ++ AK G + + VY+D D L V AD AIR
Sbjct: 136 GFKLDHAWAGIARAVVEGRLQVA-KVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRA 194
Query: 87 GPPPARLSY 95
L+Y
Sbjct: 195 AGIKCLLTY 203
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 133 NGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILI 192
GL GP A G K+ +K +M G+P H + K+ + G PI+I
Sbjct: 106 EGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTAD--HAAFTSYEEAKAYIEQKGAPIVI 163
Query: 193 KPTHGGGGKGMRIVQS 208
K GKG+ + Q+
Sbjct: 164 KADGLAAGKGVTVAQT 179
>pdb|2L82|A Chain A, Solution Nmr Structure Of De Novo Designed Protein,
P-Loop Ntpase Fold, Northeast Structural Genomics
Consortium Target Or32
Length = 162
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 40 ILIANRGEIAYRIMRTAKRLGIRTVAVYSDAD 71
++ ++ EI I+R KR G+R V +YSD D
Sbjct: 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQD 37
>pdb|4EG0|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
pdb|4EG0|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
Length = 317
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 89/245 (36%), Gaps = 37/245 (15%)
Query: 99 SSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIM 158
S++ D A+H GYG E+ G+ + G V DK +K +
Sbjct: 59 SALKDEGFVRAFNALHGGYG---ENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVW 115
Query: 159 GAAGVPLVP--------GYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPN 210
GVP P Y DI AK+G P+ +KP G + V++
Sbjct: 116 QQTGVPTPPFETVMRGDDYAARATDI------VAKLGLPLFVKPASEGSSVAVLKVKT-- 167
Query: 211 DFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGD------KYGKVLHLYERDC 264
D+ A EAA I +++EK I I GD K Y+
Sbjct: 168 --ADALPAALSEAATHDKI--VIVEKSIEGGGEYTACIAGDLDLPLIKIVPAGEFYDYHA 223
Query: 265 S-VQRRHQKIIEEA-PAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYF 322
V Q +I PA T L + A A + + G +F++D + YF
Sbjct: 224 KYVANDTQYLIPCGLPAEQETE-----LKRIARRAFDVLGCTDWGRADFMLDAAGNA-YF 277
Query: 323 MEMNT 327
+E+NT
Sbjct: 278 LEVNT 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,487,966
Number of Sequences: 62578
Number of extensions: 939814
Number of successful extensions: 2684
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2455
Number of HSP's gapped (non-prelim): 139
length of query: 765
length of database: 14,973,337
effective HSP length: 106
effective length of query: 659
effective length of database: 8,340,069
effective search space: 5496105471
effective search space used: 5496105471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)