Query 041518
Match_columns 765
No_of_seqs 697 out of 4708
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 8E-141 2E-145 1139.7 57.7 629 36-719 1-645 (645)
2 KOG0238 3-Methylcrotonyl-CoA c 100.0 4E-133 9E-138 1060.8 56.5 652 40-718 1-670 (670)
3 COG1038 PycA Pyruvate carboxyl 100.0 2E-102 4E-107 860.0 52.5 436 36-475 6-465 (1149)
4 KOG0369 Pyruvate carboxylase [ 100.0 6.4E-93 1.4E-97 769.1 46.1 433 37-473 33-486 (1176)
5 KOG0368 Acetyl-CoA carboxylase 100.0 9E-90 1.9E-94 789.5 50.3 632 33-724 50-759 (2196)
6 COG0439 AccC Biotin carboxylas 100.0 1.4E-89 3.1E-94 756.8 46.0 430 36-468 1-446 (449)
7 TIGR01235 pyruv_carbox pyruvat 100.0 2.7E-87 5.8E-92 813.5 62.6 432 39-474 1-458 (1143)
8 PRK08654 pyruvate carboxylase 100.0 4.3E-87 9.3E-92 761.2 52.2 427 36-466 1-443 (499)
9 PRK12999 pyruvate carboxylase; 100.0 5.8E-84 1.3E-88 788.7 69.9 436 35-474 3-462 (1146)
10 PRK07178 pyruvate carboxylase 100.0 6.3E-82 1.4E-86 718.5 54.4 433 36-473 1-449 (472)
11 PRK08463 acetyl-CoA carboxylas 100.0 1.6E-81 3.6E-86 715.6 53.4 434 36-473 1-451 (478)
12 PRK12833 acetyl-CoA carboxylas 100.0 1.7E-81 3.8E-86 714.0 51.7 434 35-471 3-452 (467)
13 PRK05586 biotin carboxylase; V 100.0 1.2E-76 2.5E-81 672.4 49.7 429 36-467 1-445 (447)
14 TIGR00514 accC acetyl-CoA carb 100.0 1.2E-75 2.6E-80 664.8 51.5 430 36-468 1-446 (449)
15 PRK08462 biotin carboxylase; V 100.0 9.4E-74 2E-78 649.0 51.4 427 36-467 3-445 (445)
16 PRK08591 acetyl-CoA carboxylas 100.0 7.2E-73 1.6E-77 643.2 50.5 430 36-468 1-446 (451)
17 TIGR02712 urea_carbox urea car 100.0 2E-69 4.3E-74 664.5 52.5 425 37-466 1-443 (1201)
18 PRK06111 acetyl-CoA carboxylas 100.0 5.3E-63 1.1E-67 562.3 51.1 429 36-468 1-445 (450)
19 PF02786 CPSase_L_D2: Carbamoy 100.0 2.2E-42 4.8E-47 351.2 23.9 209 150-358 1-209 (211)
20 PLN02735 carbamoyl-phosphate s 100.0 4.7E-41 1E-45 412.3 38.0 323 36-375 573-924 (1102)
21 TIGR01369 CPSaseII_lrg carbamo 100.0 1.1E-39 2.3E-44 401.9 42.4 362 35-431 4-385 (1050)
22 TIGR01142 purT phosphoribosylg 100.0 3.4E-39 7.3E-44 359.3 42.1 356 39-431 1-360 (380)
23 PLN02948 phosphoribosylaminoim 100.0 1.7E-38 3.6E-43 367.2 42.2 360 35-431 20-382 (577)
24 PRK07206 hypothetical protein; 100.0 7.2E-39 1.6E-43 360.8 36.3 386 36-447 1-407 (416)
25 PLN02735 carbamoyl-phosphate s 100.0 6.9E-39 1.5E-43 393.2 38.2 325 26-364 12-356 (1102)
26 PRK06019 phosphoribosylaminoim 100.0 2.7E-37 5.8E-42 342.5 39.3 310 37-378 2-312 (372)
27 PRK09288 purT phosphoribosylgl 100.0 8.6E-37 1.9E-41 341.6 42.5 302 37-358 12-314 (395)
28 TIGR01161 purK phosphoribosyla 100.0 7.4E-37 1.6E-41 336.9 38.7 309 39-378 1-310 (352)
29 PRK02186 argininosuccinate lya 100.0 2.7E-35 5.9E-40 358.6 43.7 360 37-431 2-375 (887)
30 PRK05294 carB carbamoyl phosph 100.0 9.9E-36 2.1E-40 368.1 37.3 311 35-359 5-334 (1066)
31 TIGR01369 CPSaseII_lrg carbamo 100.0 1.9E-35 4.2E-40 364.3 38.9 303 37-358 554-870 (1050)
32 PRK12815 carB carbamoyl phosph 100.0 4.6E-35 9.9E-40 361.1 37.1 313 33-359 3-333 (1068)
33 PRK05294 carB carbamoyl phosph 100.0 2.2E-34 4.8E-39 356.2 38.4 305 35-358 552-870 (1066)
34 PRK12815 carB carbamoyl phosph 100.0 2.4E-34 5.2E-39 354.7 36.5 302 36-358 554-868 (1068)
35 PRK12767 carbamoyl phosphate s 100.0 4.6E-34 1E-38 311.4 32.8 294 37-359 1-299 (326)
36 PRK06395 phosphoribosylamine-- 100.0 5E-33 1.1E-37 313.0 38.3 294 36-355 1-320 (435)
37 PRK13789 phosphoribosylamine-- 100.0 3E-33 6.6E-38 313.9 35.2 299 37-356 4-323 (426)
38 TIGR00877 purD phosphoribosyla 100.0 8.6E-33 1.9E-37 312.1 37.9 298 39-355 2-317 (423)
39 PRK00885 phosphoribosylamine-- 100.0 7.2E-33 1.6E-37 312.3 34.7 300 39-358 2-318 (420)
40 PLN02257 phosphoribosylamine-- 100.0 4.9E-32 1.1E-36 304.3 35.4 300 41-357 1-319 (434)
41 PRK05784 phosphoribosylamine-- 100.0 4E-31 8.7E-36 299.7 36.3 370 39-446 2-420 (486)
42 COG0458 CarB Carbamoylphosphat 100.0 4.7E-31 1E-35 282.2 31.4 313 39-366 7-327 (400)
43 PRK13790 phosphoribosylamine-- 100.0 3E-31 6.4E-36 294.5 30.2 275 94-381 12-303 (379)
44 PF15632 ATPgrasp_Ter: ATP-gra 100.0 4.7E-31 1E-35 282.5 30.3 293 41-359 2-310 (329)
45 PRK01966 ddl D-alanyl-alanine 100.0 6.6E-31 1.4E-35 287.1 30.5 301 36-351 2-327 (333)
46 PRK14569 D-alanyl-alanine synt 100.0 1.6E-30 3.5E-35 279.5 32.7 272 38-352 4-292 (296)
47 COG0027 PurT Formate-dependent 100.0 7.4E-30 1.6E-34 260.1 30.2 332 37-398 12-349 (394)
48 PRK06524 biotin carboxylase-li 100.0 2.3E-30 4.9E-35 287.8 28.6 251 98-360 93-358 (493)
49 PRK01372 ddl D-alanine--D-alan 100.0 1.2E-29 2.7E-34 273.9 32.8 277 35-351 2-296 (304)
50 COG0026 PurK Phosphoribosylami 100.0 4.9E-29 1.1E-33 263.6 35.4 310 37-379 1-313 (375)
51 PRK14572 D-alanyl-alanine synt 100.0 2.4E-29 5.1E-34 276.3 32.2 304 38-351 2-341 (347)
52 PRK14568 vanB D-alanine--D-lac 100.0 2.1E-29 4.6E-34 276.4 30.9 293 37-351 3-336 (343)
53 PRK06849 hypothetical protein; 100.0 5.7E-30 1.2E-34 285.9 25.4 277 37-337 4-284 (389)
54 COG0151 PurD Phosphoribosylami 100.0 3.3E-28 7.2E-33 260.7 37.6 366 39-447 2-399 (428)
55 PRK14570 D-alanyl-alanine synt 100.0 5.2E-29 1.1E-33 274.0 31.7 306 36-353 1-347 (364)
56 TIGR01205 D_ala_D_alaTIGR D-al 100.0 9.7E-29 2.1E-33 268.2 32.6 277 48-352 19-312 (315)
57 PRK14571 D-alanyl-alanine synt 100.0 1E-26 2.2E-31 250.6 32.3 260 49-353 21-296 (299)
58 PRK14573 bifunctional D-alanyl 100.0 6.9E-27 1.5E-31 283.2 34.6 301 37-351 451-782 (809)
59 PF02785 Biotin_carb_C: Biotin 99.9 1.1E-26 2.4E-31 209.1 7.2 91 372-464 1-107 (107)
60 PRK10446 ribosomal protein S6 99.9 8.5E-24 1.8E-28 228.0 27.9 277 39-355 2-289 (300)
61 KOG0370 Multifunctional pyrimi 99.9 2.6E-24 5.7E-29 242.8 24.3 304 37-359 918-1235(1435)
62 TIGR00768 rimK_fam alpha-L-glu 99.9 1E-23 2.2E-28 224.2 27.1 266 45-351 9-276 (277)
63 PF13535 ATP-grasp_4: ATP-gras 99.9 2.6E-24 5.6E-29 214.2 19.1 177 147-333 1-183 (184)
64 PRK13278 purP 5-formaminoimida 99.9 4.8E-23 1E-27 224.2 29.5 268 39-332 20-315 (358)
65 smart00878 Biotin_carb_C Bioti 99.9 1.5E-25 3.2E-30 202.2 8.0 91 372-464 1-107 (107)
66 COG2232 Predicted ATP-dependen 99.9 2.2E-23 4.9E-28 214.4 24.2 298 37-379 11-320 (389)
67 TIGR02144 LysX_arch Lysine bio 99.9 1.5E-22 3.2E-27 216.1 29.2 264 48-353 11-276 (280)
68 PRK13277 5-formaminoimidazole- 99.9 3E-22 6.5E-27 214.5 27.8 293 39-358 19-349 (366)
69 COG1181 DdlA D-alanine-D-alani 99.9 2.4E-21 5.2E-26 208.1 27.9 273 49-352 23-313 (317)
70 PF00289 CPSase_L_chain: Carba 99.9 2.6E-23 5.6E-28 189.3 10.5 110 36-145 1-110 (110)
71 TIGR03103 trio_acet_GNAT GNAT- 99.9 1.9E-22 4.1E-27 232.9 17.6 270 53-352 204-540 (547)
72 PF07478 Dala_Dala_lig_C: D-al 99.9 1.5E-21 3.4E-26 197.9 19.4 186 157-351 1-201 (203)
73 KOG0237 Glycinamide ribonucleo 99.9 8.4E-20 1.8E-24 199.1 30.1 331 95-461 54-421 (788)
74 PRK14016 cyanophycin synthetas 99.9 2.9E-21 6.4E-26 229.9 19.0 255 69-352 141-471 (727)
75 KOG0370 Multifunctional pyrimi 99.9 2.3E-21 5E-26 219.3 15.4 313 36-364 376-706 (1435)
76 PF02222 ATP-grasp: ATP-grasp 99.9 2.1E-20 4.5E-25 183.8 19.5 166 158-336 1-168 (172)
77 COG3919 Predicted ATP-grasp en 99.8 1.3E-19 2.7E-24 183.9 16.9 297 38-356 4-314 (415)
78 PF01071 GARS_A: Phosphoribosy 99.8 3.1E-19 6.7E-24 177.2 18.0 171 149-334 1-192 (194)
79 PF02655 ATP-grasp_3: ATP-gras 99.8 2.7E-19 5.9E-24 175.3 10.9 157 148-331 1-160 (161)
80 COG0511 AccB Biotin carboxyl c 99.8 8.6E-19 1.9E-23 166.7 13.5 72 648-719 69-140 (140)
81 COG0189 RimK Glutathione synth 99.8 9.4E-18 2E-22 180.8 22.9 226 108-352 77-311 (318)
82 PF08443 RimK: RimK-like ATP-g 99.8 8.3E-18 1.8E-22 169.3 16.4 183 148-351 1-189 (190)
83 PRK05641 putative acetyl-CoA c 99.8 2.2E-17 4.7E-22 158.3 17.5 144 563-717 4-152 (153)
84 PRK06549 acetyl-CoA carboxylas 99.7 7.8E-17 1.7E-21 149.8 14.4 71 647-717 59-129 (130)
85 PRK05889 putative acetyl-CoA c 99.7 1.2E-16 2.5E-21 134.5 9.5 69 650-718 3-71 (71)
86 COG1821 Predicted ATP-utilizin 99.7 1.9E-15 4.2E-20 151.1 17.9 193 124-358 89-285 (307)
87 PRK12458 glutathione synthetas 99.7 7.4E-15 1.6E-19 160.6 24.2 279 46-353 10-322 (338)
88 PRK14042 pyruvate carboxylase 99.7 1.1E-15 2.3E-20 175.9 16.7 75 645-719 521-595 (596)
89 TIGR02068 cya_phycin_syn cyano 99.7 8E-15 1.7E-19 178.3 24.1 201 140-353 203-471 (864)
90 PRK02471 bifunctional glutamat 99.6 9.6E-15 2.1E-19 173.8 22.9 199 140-351 478-749 (752)
91 TIGR01435 glu_cys_lig_rel glut 99.6 7.5E-15 1.6E-19 172.1 19.3 199 140-351 465-735 (737)
92 PRK06748 hypothetical protein; 99.6 2.1E-15 4.6E-20 128.8 9.7 70 651-720 6-76 (83)
93 PRK08225 acetyl-CoA carboxylas 99.6 2.1E-15 4.6E-20 126.5 8.6 69 650-718 2-70 (70)
94 PLN02941 inositol-tetrakisphos 99.6 1E-13 2.2E-18 149.4 23.1 228 48-330 37-305 (328)
95 PF00364 Biotin_lipoyl: Biotin 99.6 2.4E-15 5.1E-20 127.5 7.4 67 651-717 2-74 (74)
96 PRK09282 pyruvate carboxylase 99.6 1.9E-14 4.1E-19 166.9 16.5 126 586-719 467-592 (592)
97 PRK05246 glutathione synthetas 99.5 1E-12 2.2E-17 142.9 24.6 275 48-353 20-310 (316)
98 TIGR01380 glut_syn glutathione 99.5 1.2E-12 2.5E-17 142.0 24.2 275 48-352 19-308 (312)
99 TIGR00531 BCCP acetyl-CoA carb 99.5 2.6E-14 5.7E-19 138.3 9.1 70 649-718 80-156 (156)
100 COG1759 5-formaminoimidazole-4 99.5 3.4E-12 7.3E-17 132.1 23.4 267 45-334 25-320 (361)
101 PRK14040 oxaloacetate decarbox 99.5 9E-14 2E-18 160.9 13.2 72 647-718 522-593 (593)
102 PRK07051 hypothetical protein; 99.5 8.7E-14 1.9E-18 119.8 9.3 69 650-718 4-79 (80)
103 TIGR01108 oadA oxaloacetate de 99.5 1E-13 2.2E-18 160.4 12.7 70 645-714 513-582 (582)
104 PLN02983 biotin carboxyl carri 99.5 7.8E-14 1.7E-18 141.7 9.9 72 648-719 196-274 (274)
105 PRK06302 acetyl-CoA carboxylas 99.5 1.9E-13 4.1E-18 132.3 9.2 70 649-718 79-155 (155)
106 TIGR02291 rimK_rel_E_lig alpha 99.4 4.7E-12 1E-16 135.6 19.7 203 140-351 27-291 (317)
107 cd06850 biotinyl_domain The bi 99.4 1.4E-12 3E-17 107.8 9.3 67 651-717 1-67 (67)
108 TIGR02712 urea_carbox urea car 99.2 1.2E-11 2.6E-16 154.2 9.8 72 647-718 1130-1201(1201)
109 cd06663 Biotinyl_lipoyl_domain 99.2 4.7E-11 1E-15 100.9 9.4 61 657-717 13-73 (73)
110 PLN02226 2-oxoglutarate dehydr 99.2 2.4E-11 5.2E-16 135.6 9.2 65 656-720 104-168 (463)
111 PRK14875 acetoin dehydrogenase 99.2 5E-11 1.1E-15 131.8 9.7 66 656-721 15-80 (371)
112 PTZ00144 dihydrolipoamide succ 99.2 5E-11 1.1E-15 132.2 9.4 66 656-721 57-122 (418)
113 PRK05704 dihydrolipoamide succ 99.1 3.9E-10 8.5E-15 125.8 9.6 66 656-721 15-80 (407)
114 TIGR01016 sucCoAbeta succinyl- 99.0 1.3E-08 2.7E-13 114.0 17.6 109 150-260 4-126 (386)
115 PF14397 ATPgrasp_ST: Sugar-tr 99.0 3.3E-08 7.2E-13 105.7 19.1 187 140-330 16-259 (285)
116 TIGR01347 sucB 2-oxoglutarate 99.0 1.8E-09 3.9E-14 120.3 9.7 65 657-721 14-78 (403)
117 COG0508 AceF Pyruvate/2-oxoglu 98.9 2.1E-09 4.6E-14 119.9 8.9 66 657-722 16-81 (404)
118 PRK11854 aceF pyruvate dehydro 98.9 2.8E-09 6.1E-14 125.8 9.0 66 655-720 216-281 (633)
119 PRK11854 aceF pyruvate dehydro 98.9 3.6E-09 7.8E-14 124.9 9.5 65 656-720 13-77 (633)
120 PF14398 ATPgrasp_YheCD: YheC/ 98.9 1.1E-07 2.4E-12 100.6 19.1 184 130-330 4-234 (262)
121 PRK00696 sucC succinyl-CoA syn 98.9 8.6E-08 1.9E-12 107.4 19.0 109 150-260 4-125 (388)
122 PLN02528 2-oxoisovalerate dehy 98.8 1.1E-08 2.3E-13 114.8 9.8 64 657-720 12-75 (416)
123 TIGR01348 PDHac_trf_long pyruv 98.8 8.8E-09 1.9E-13 119.4 8.6 65 656-720 128-192 (546)
124 TIGR02927 SucB_Actino 2-oxoglu 98.8 1.4E-08 3E-13 118.7 9.4 66 655-720 147-212 (590)
125 TIGR01348 PDHac_trf_long pyruv 98.8 1.7E-08 3.7E-13 117.1 9.6 67 654-720 10-76 (546)
126 PRK11855 dihydrolipoamide acet 98.7 3.1E-08 6.8E-13 115.4 9.0 64 657-720 132-195 (547)
127 cd06849 lipoyl_domain Lipoyl d 98.7 1.1E-07 2.3E-12 78.8 9.2 65 653-717 10-74 (74)
128 PRK11855 dihydrolipoamide acet 98.6 1E-07 2.2E-12 111.2 9.2 65 656-720 14-78 (547)
129 PRK11856 branched-chain alpha- 98.6 1.5E-07 3.4E-12 106.1 9.7 66 656-721 15-80 (411)
130 TIGR01349 PDHac_trf_mito pyruv 98.5 1.8E-07 4E-12 105.6 8.9 65 656-720 12-77 (435)
131 PF13549 ATP-grasp_5: ATP-gras 98.5 9.5E-07 2.1E-11 90.8 12.6 110 150-261 11-131 (222)
132 PRK11892 pyruvate dehydrogenas 98.5 3E-07 6.4E-12 104.3 8.6 64 657-720 16-80 (464)
133 PLN02744 dihydrolipoyllysine-r 98.5 3.3E-07 7.1E-12 104.9 8.6 63 657-719 126-189 (539)
134 TIGR02927 SucB_Actino 2-oxoglu 98.4 6.7E-07 1.4E-11 104.8 8.7 64 656-719 15-78 (590)
135 KOG0559 Dihydrolipoamide succi 98.4 1.5E-07 3.2E-12 98.8 2.3 65 657-721 86-150 (457)
136 PRK14046 malate--CoA ligase su 98.3 1.3E-05 2.8E-10 89.7 17.0 108 151-260 5-125 (392)
137 PF05770 Ins134_P3_kin: Inosit 98.3 5.8E-06 1.3E-10 88.5 13.6 177 133-330 77-290 (307)
138 COG0045 SucC Succinyl-CoA synt 98.3 7.8E-06 1.7E-10 88.3 13.4 107 151-259 5-121 (387)
139 KOG0557 Dihydrolipoamide acety 98.2 2.2E-06 4.7E-11 93.8 7.4 69 653-721 47-117 (470)
140 PRK13380 glycine cleavage syst 98.2 1.3E-06 2.8E-11 83.5 4.8 71 651-721 37-115 (144)
141 PRK09783 copper/silver efflux 98.2 4.1E-06 9E-11 94.4 9.6 75 647-721 121-244 (409)
142 PLN00124 succinyl-CoA ligase [ 98.2 6.4E-05 1.4E-09 84.4 17.5 106 150-258 31-159 (422)
143 TIGR00998 8a0101 efflux pump m 98.1 5.6E-06 1.2E-10 90.8 8.4 35 687-721 205-239 (334)
144 cd06848 GCS_H Glycine cleavage 98.1 5.4E-06 1.2E-10 74.0 6.7 55 653-707 24-79 (96)
145 PRK01202 glycine cleavage syst 98.1 2.6E-05 5.6E-10 73.2 10.0 69 653-721 32-108 (127)
146 PF02955 GSH-S_ATP: Prokaryoti 98.1 3.4E-05 7.4E-10 76.2 11.2 141 165-328 12-161 (173)
147 PRK10476 multidrug resistance 98.1 1E-05 2.2E-10 89.4 8.4 36 686-721 208-243 (346)
148 PRK10559 p-hydroxybenzoic acid 98.1 1.2E-05 2.7E-10 87.2 8.9 70 652-721 50-189 (310)
149 PLN02235 ATP citrate (pro-S)-l 98.0 0.00011 2.4E-09 81.5 15.9 107 152-259 9-132 (423)
150 PF08442 ATP-grasp_2: ATP-gras 98.0 1.2E-05 2.6E-10 81.5 7.6 103 151-255 4-118 (202)
151 TIGR03077 not_gcvH glycine cle 98.0 1.3E-05 2.9E-10 72.9 6.0 51 656-706 28-79 (110)
152 TIGR01730 RND_mfp RND family e 97.9 1.5E-05 3.3E-10 86.5 6.7 72 650-721 27-169 (322)
153 PRK15136 multidrug efflux syst 97.9 2.6E-05 5.6E-10 87.5 8.3 35 687-721 216-250 (390)
154 PRK03598 putative efflux pump 97.9 2.5E-05 5.3E-10 85.8 7.9 36 686-721 203-238 (331)
155 PF14305 ATPgrasp_TupA: TupA-l 97.9 0.00046 1E-08 72.1 16.6 177 143-332 13-221 (239)
156 PF13533 Biotin_lipoyl_2: Biot 97.9 1.3E-05 2.8E-10 62.5 3.8 35 650-684 3-37 (50)
157 KOG0558 Dihydrolipoamide trans 97.9 9.2E-06 2E-10 85.1 3.8 63 659-721 80-142 (474)
158 PRK15030 multidrug efflux syst 97.9 2.6E-05 5.7E-10 87.7 7.6 71 650-720 66-209 (397)
159 PRK09578 periplasmic multidrug 97.8 3.7E-05 8.1E-10 86.2 7.9 72 650-721 64-208 (385)
160 PRK09859 multidrug efflux syst 97.8 3.7E-05 8.1E-10 86.2 7.4 71 650-720 62-205 (385)
161 PF02844 GARS_N: Phosphoribosy 97.7 0.00049 1.1E-08 61.4 11.3 93 39-147 2-99 (100)
162 PRK00624 glycine cleavage syst 97.7 7.7E-05 1.7E-09 68.3 6.5 49 655-703 29-78 (114)
163 TIGR00527 gcvH glycine cleavag 97.7 6.3E-05 1.4E-09 70.5 5.5 69 653-721 31-107 (127)
164 PRK12784 hypothetical protein; 97.6 0.0003 6.5E-09 58.2 7.9 70 651-720 7-77 (84)
165 PRK11578 macrolide transporter 97.6 9.8E-05 2.1E-09 82.3 6.9 71 650-720 62-220 (370)
166 PRK11556 multidrug efflux syst 97.6 9.8E-05 2.1E-09 83.5 6.6 71 650-720 88-231 (415)
167 TIGR03309 matur_yqeB selenium- 97.5 0.00027 5.8E-09 73.0 8.1 69 648-722 163-231 (256)
168 PF02750 Synapsin_C: Synapsin, 97.4 0.0046 1E-07 61.2 15.2 167 140-328 1-177 (203)
169 PF12700 HlyD_2: HlyD family s 97.4 0.0001 2.2E-09 80.3 4.1 31 650-681 22-52 (328)
170 PRK05641 putative acetyl-CoA c 97.3 0.0041 8.9E-08 60.2 13.4 31 650-680 122-152 (153)
171 PF13533 Biotin_lipoyl_2: Biot 97.3 0.00029 6.2E-09 54.9 4.4 36 686-721 2-37 (50)
172 TIGR01843 type_I_hlyD type I s 97.3 0.00071 1.5E-08 76.5 9.2 33 649-681 43-75 (423)
173 TIGR02971 heterocyst_DevB ABC 97.3 0.00066 1.4E-08 74.3 8.3 33 650-682 14-49 (327)
174 TIGR03794 NHPM_micro_HlyD NHPM 97.0 0.0022 4.9E-08 72.8 9.0 34 687-720 254-287 (421)
175 PF03133 TTL: Tubulin-tyrosine 96.9 0.0045 9.7E-08 66.7 10.1 43 189-240 67-109 (292)
176 PF14403 CP_ATPgrasp_2: Circul 96.9 0.0056 1.2E-07 69.0 11.0 186 37-252 185-396 (445)
177 COG1566 EmrA Multidrug resista 96.9 0.0022 4.7E-08 70.3 7.4 34 687-720 209-242 (352)
178 PF01597 GCV_H: Glycine cleava 96.9 0.0025 5.3E-08 59.5 6.6 65 657-721 30-102 (122)
179 PF13375 RnfC_N: RnfC Barrel s 96.9 0.0032 6.9E-08 56.6 7.0 48 653-701 23-81 (101)
180 KOG3895 Synaptic vesicle prote 96.8 0.0068 1.5E-07 64.4 9.6 201 106-327 152-365 (488)
181 PF06973 DUF1297: Domain of un 96.7 0.0078 1.7E-07 58.9 8.6 101 230-333 21-146 (188)
182 PF06849 DUF1246: Protein of u 96.6 0.0018 3.8E-08 59.4 3.5 117 46-169 6-123 (124)
183 PRK05889 putative acetyl-CoA c 96.6 0.0054 1.2E-07 51.4 6.0 46 687-732 3-52 (71)
184 PF11379 DUF3182: Protein of u 96.5 0.045 9.8E-07 58.6 13.6 151 103-266 59-211 (355)
185 PRK08225 acetyl-CoA carboxylas 96.5 0.0086 1.9E-07 50.0 6.5 33 649-681 38-70 (70)
186 COG0509 GcvH Glycine cleavage 96.4 0.0057 1.2E-07 56.8 5.3 68 655-722 36-111 (131)
187 cd06252 M14_ASTE_ASPA_like_2 A 96.2 0.017 3.7E-07 63.0 9.0 67 650-719 245-315 (316)
188 cd06253 M14_ASTE_ASPA_like_3 A 96.1 0.017 3.8E-07 62.4 8.5 66 649-717 229-297 (298)
189 TIGR00999 8a0102 Membrane Fusi 96.1 0.013 2.8E-07 61.9 7.4 29 652-680 91-119 (265)
190 cd06251 M14_ASTE_ASPA_like_1 A 96.1 0.02 4.4E-07 61.5 8.7 65 650-717 220-286 (287)
191 PF13437 HlyD_3: HlyD family s 96.1 0.024 5.1E-07 51.0 7.8 75 651-734 1-77 (105)
192 PRK07051 hypothetical protein; 96.0 0.0076 1.6E-07 51.8 4.1 32 650-681 48-79 (80)
193 TIGR01235 pyruv_carbox pyruvat 95.9 0.035 7.5E-07 70.1 11.0 130 584-718 1010-1143(1143)
194 TIGR02994 ectoine_eutE ectoine 95.9 0.027 5.8E-07 61.6 8.6 65 650-717 256-324 (325)
195 TIGR00715 precor6x_red precorr 95.8 0.095 2.1E-06 55.3 12.1 92 39-138 2-96 (256)
196 PRK06748 hypothetical protein; 95.8 0.034 7.4E-07 48.0 7.1 36 687-722 5-41 (83)
197 PRK08057 cobalt-precorrin-6x r 95.8 0.092 2E-06 55.2 11.7 93 36-138 1-96 (248)
198 COG0511 AccB Biotin carboxyl c 95.7 0.0099 2.1E-07 56.9 3.8 33 650-682 108-140 (140)
199 COG3608 Predicted deacylase [G 95.6 0.031 6.6E-07 60.3 7.5 68 649-719 256-326 (331)
200 PRK09282 pyruvate carboxylase 95.6 0.12 2.5E-06 61.1 12.8 33 649-681 559-591 (592)
201 cd06250 M14_PaAOTO_like An unc 95.5 0.04 8.6E-07 61.2 8.4 66 649-717 289-358 (359)
202 PF13380 CoA_binding_2: CoA bi 95.3 0.08 1.7E-06 48.9 8.2 98 38-143 1-111 (116)
203 cd06254 M14_ASTE_ASPA_like_4 A 95.3 0.039 8.4E-07 59.4 7.0 65 647-714 221-287 (288)
204 PF13437 HlyD_3: HlyD family s 95.1 0.038 8.2E-07 49.7 5.4 42 688-730 1-42 (105)
205 cd00210 PTS_IIA_glc PTS_IIA, P 95.1 0.055 1.2E-06 50.5 6.4 25 695-719 79-103 (124)
206 cd06850 biotinyl_domain The bi 95.0 0.045 9.7E-07 44.5 5.1 33 689-721 2-34 (67)
207 COG1748 LYS9 Saccharopine dehy 95.0 0.069 1.5E-06 59.4 8.1 118 37-169 1-123 (389)
208 PF02571 CbiJ: Precorrin-6x re 95.0 0.23 4.9E-06 52.3 11.5 93 38-138 1-97 (249)
209 COG2099 CobK Precorrin-6x redu 94.8 0.3 6.5E-06 50.7 11.4 93 37-138 2-97 (257)
210 PRK09439 PTS system glucose-sp 94.7 0.059 1.3E-06 53.0 5.8 66 650-719 21-125 (169)
211 TIGR00830 PTBA PTS system, glu 94.7 0.081 1.8E-06 49.1 6.3 63 649-719 35-103 (121)
212 PF00364 Biotin_lipoyl: Biotin 94.3 0.1 2.2E-06 44.1 5.6 46 687-732 1-56 (74)
213 PF05896 NQRA: Na(+)-transloca 94.2 0.062 1.4E-06 56.1 4.9 50 652-702 32-81 (257)
214 PRK06549 acetyl-CoA carboxylas 94.1 0.12 2.6E-06 48.6 6.2 47 686-732 61-111 (130)
215 PF14243 DUF4343: Domain of un 94.0 0.95 2.1E-05 42.7 12.2 115 188-330 2-117 (130)
216 PF00529 HlyD: HlyD family sec 93.8 0.038 8.2E-07 59.5 2.6 30 652-681 4-33 (305)
217 COG2190 NagE Phosphotransferas 93.6 0.14 3.1E-06 49.3 5.7 25 695-719 86-110 (156)
218 PF00358 PTS_EIIA_1: phosphoen 93.5 0.09 2E-06 49.6 4.2 19 701-719 89-107 (132)
219 TIGR00998 8a0101 efflux pump m 93.4 0.22 4.8E-06 54.5 7.9 78 649-735 204-283 (334)
220 PRK14042 pyruvate carboxylase 93.0 0.44 9.6E-06 56.1 9.7 45 688-732 527-575 (596)
221 PF09891 DUF2118: Uncharacteri 92.9 0.15 3.3E-06 48.9 4.9 50 652-701 83-133 (150)
222 PRK10476 multidrug resistance 92.9 0.16 3.5E-06 56.0 6.0 35 649-683 208-242 (346)
223 PRK06302 acetyl-CoA carboxylas 92.8 0.11 2.3E-06 50.7 3.7 32 650-681 124-155 (155)
224 TIGR00531 BCCP acetyl-CoA carb 92.8 0.11 2.4E-06 50.6 3.8 32 650-681 125-156 (156)
225 TIGR01936 nqrA NADH:ubiquinone 92.6 0.13 2.9E-06 58.4 4.8 47 654-701 34-80 (447)
226 PRK05352 Na(+)-translocating N 92.3 0.24 5.2E-06 56.5 6.3 45 656-701 37-81 (448)
227 PRK09439 PTS system glucose-sp 92.1 0.52 1.1E-05 46.5 7.5 29 654-682 97-125 (169)
228 COG2190 NagE Phosphotransferas 92.0 0.49 1.1E-05 45.7 7.0 21 662-682 90-110 (156)
229 PRK04148 hypothetical protein; 91.9 0.47 1E-05 44.9 6.7 73 38-116 18-109 (134)
230 cd06663 Biotinyl_lipoyl_domain 91.8 0.17 3.7E-06 42.3 3.4 31 650-680 43-73 (73)
231 PRK05849 hypothetical protein; 91.7 8.8 0.00019 46.9 18.8 177 147-326 7-213 (783)
232 PRK11556 multidrug efflux syst 91.7 0.33 7.1E-06 55.1 6.5 61 660-721 62-122 (415)
233 cd06255 M14_ASTE_ASPA_like_5 A 91.7 0.46 1E-05 51.3 7.3 51 649-700 231-283 (293)
234 PRK03598 putative efflux pump 91.5 0.37 8.1E-06 52.8 6.5 35 649-683 203-237 (331)
235 KOG2156 Tubulin-tyrosine ligas 91.4 0.82 1.8E-05 51.6 8.9 66 162-241 279-345 (662)
236 PF00529 HlyD: HlyD family sec 91.2 0.15 3.2E-06 54.8 3.0 35 687-721 2-36 (305)
237 CHL00194 ycf39 Ycf39; Provisio 91.0 2 4.4E-05 46.6 11.7 69 39-116 2-71 (317)
238 COG1064 AdhP Zn-dependent alco 91.0 1.1 2.5E-05 48.9 9.4 158 36-221 166-326 (339)
239 KOG0368 Acetyl-CoA carboxylase 90.8 1.6 3.5E-05 54.9 11.1 111 587-720 606-719 (2196)
240 TIGR01945 rnfC electron transp 90.7 0.45 9.7E-06 54.3 6.4 43 658-701 40-82 (435)
241 PRK11578 macrolide transporter 90.7 0.52 1.1E-05 52.5 6.8 62 659-721 35-96 (370)
242 PRK09578 periplasmic multidrug 90.6 0.52 1.1E-05 52.9 6.7 62 660-722 38-99 (385)
243 PRK09859 multidrug efflux syst 90.6 0.51 1.1E-05 52.9 6.6 61 660-721 36-96 (385)
244 PLN02983 biotin carboxyl carri 90.6 0.26 5.6E-06 51.4 3.8 32 650-681 242-273 (274)
245 COG1726 NqrA Na+-transporting 90.4 0.39 8.4E-06 51.7 5.0 63 655-720 35-97 (447)
246 TIGR01000 bacteriocin_acc bact 90.3 0.24 5.1E-06 57.0 3.8 31 651-681 61-91 (457)
247 KOG2799 Succinyl-CoA synthetas 90.1 1.1 2.4E-05 48.5 8.0 69 150-220 26-106 (434)
248 TIGR02971 heterocyst_DevB ABC 90.0 0.4 8.7E-06 52.4 5.0 42 680-721 7-51 (327)
249 PF05368 NmrA: NmrA-like famil 90.0 0.96 2.1E-05 46.6 7.6 117 40-165 1-137 (233)
250 COG0569 TrkA K+ transport syst 89.9 0.95 2.1E-05 46.9 7.5 91 38-136 1-94 (225)
251 PF04952 AstE_AspA: Succinylgl 89.8 0.89 1.9E-05 48.8 7.5 68 649-719 220-291 (292)
252 TIGR02964 xanthine_xdhC xanthi 89.5 1.7 3.8E-05 45.6 9.1 35 37-71 100-134 (246)
253 PRK15136 multidrug efflux syst 89.5 0.36 7.9E-06 54.3 4.3 34 649-682 61-94 (390)
254 TIGR03794 NHPM_micro_HlyD NHPM 89.4 0.97 2.1E-05 51.4 7.7 34 649-682 253-286 (421)
255 PRK14875 acetoin dehydrogenase 89.3 0.37 7.9E-06 53.1 4.2 35 650-684 46-80 (371)
256 PRK10255 PTS system N-acetyl g 89.1 0.67 1.4E-05 55.1 6.2 67 649-719 498-603 (648)
257 PRK10559 p-hydroxybenzoic acid 89.0 0.4 8.7E-06 52.2 4.1 35 687-721 48-82 (310)
258 KOG0559 Dihydrolipoamide succi 89.0 0.34 7.3E-06 52.1 3.3 34 650-683 116-149 (457)
259 TIGR01730 RND_mfp RND family e 88.9 0.6 1.3E-05 50.5 5.4 36 686-721 26-61 (322)
260 PRK05035 electron transport co 88.8 1.2 2.7E-05 53.5 8.3 39 662-701 50-88 (695)
261 KOG3373 Glycine cleavage syste 88.7 0.28 6.2E-06 46.9 2.3 42 665-706 88-129 (172)
262 PRK15030 multidrug efflux syst 88.7 0.69 1.5E-05 52.2 5.8 57 664-721 44-100 (397)
263 TIGR01995 PTS-II-ABC-beta PTS 88.6 1.2 2.5E-05 53.2 7.8 14 650-663 500-513 (610)
264 TIGR00999 8a0102 Membrane Fusi 88.5 0.83 1.8E-05 48.1 6.0 36 686-721 88-123 (265)
265 PRK14040 oxaloacetate decarbox 88.5 1.1 2.5E-05 52.9 7.6 47 686-732 524-574 (593)
266 PLN02819 lysine-ketoglutarate 88.4 2.4 5.1E-05 53.2 10.6 150 37-198 569-737 (1042)
267 TIGR01995 PTS-II-ABC-beta PTS 88.2 0.81 1.7E-05 54.4 6.2 65 651-719 464-567 (610)
268 TIGR00830 PTBA PTS system, glu 88.2 0.64 1.4E-05 43.2 4.2 30 653-682 74-103 (121)
269 PRK09824 PTS system beta-gluco 88.2 0.76 1.6E-05 54.6 5.9 65 651-719 480-583 (627)
270 PRK06988 putative formyltransf 88.1 1.4 3E-05 48.0 7.6 38 36-73 1-38 (312)
271 PLN02226 2-oxoglutarate dehydr 88.1 0.46 9.9E-06 54.1 3.9 33 650-682 135-167 (463)
272 PRK09824 PTS system beta-gluco 88.1 1.3 2.9E-05 52.5 7.9 56 662-717 563-625 (627)
273 PF06898 YqfD: Putative stage 88.0 1.9 4.1E-05 48.4 8.7 35 645-679 185-226 (385)
274 TIGR01108 oadA oxaloacetate de 87.9 1.2 2.7E-05 52.5 7.4 83 650-732 473-567 (582)
275 PF12700 HlyD_2: HlyD family s 87.5 0.54 1.2E-05 51.0 4.0 43 678-723 15-57 (328)
276 PRK12999 pyruvate carboxylase; 87.3 2.3 5.1E-05 54.2 9.8 130 585-719 1013-1146(1146)
277 KOG2157 Predicted tubulin-tyro 87.0 3.4 7.3E-05 47.6 10.0 54 187-241 199-252 (497)
278 COG1087 GalE UDP-glucose 4-epi 86.9 2.8 6E-05 44.9 8.5 71 38-115 1-73 (329)
279 COG2910 Putative NADH-flavin r 86.7 4.1 8.9E-05 40.6 8.9 71 39-120 2-73 (211)
280 TIGR02876 spore_yqfD sporulati 86.7 2.8 6.1E-05 47.0 9.0 34 646-679 183-223 (382)
281 TIGR01000 bacteriocin_acc bact 86.7 0.99 2.2E-05 51.9 5.7 36 686-721 59-94 (457)
282 TIGR01843 type_I_hlyD type I s 86.5 0.92 2E-05 51.2 5.3 43 680-722 37-79 (423)
283 PTZ00144 dihydrolipoamide succ 86.3 0.66 1.4E-05 52.3 3.8 34 650-683 88-121 (418)
284 PF00358 PTS_EIIA_1: phosphoen 86.2 0.61 1.3E-05 44.1 2.9 30 655-684 80-109 (132)
285 PF13478 XdhC_C: XdhC Rossmann 86.0 1.3 2.9E-05 42.0 5.2 85 40-139 1-85 (136)
286 KOG0238 3-Methylcrotonyl-CoA c 85.8 3.9 8.6E-05 46.3 9.3 34 687-720 602-635 (670)
287 PF01820 Dala_Dala_lig_N: D-al 85.6 0.59 1.3E-05 43.2 2.5 92 49-140 21-117 (117)
288 PRK10255 PTS system N-acetyl g 85.4 1.9 4E-05 51.4 7.1 27 656-682 577-603 (648)
289 COG4656 RnfC Predicted NADH:ub 85.4 0.71 1.5E-05 52.5 3.4 38 662-701 46-83 (529)
290 COG4770 Acetyl/propionyl-CoA c 85.3 0.98 2.1E-05 51.7 4.4 34 687-720 576-609 (645)
291 cd00210 PTS_IIA_glc PTS_IIA, P 85.2 1.2 2.5E-05 41.7 4.2 30 653-682 74-103 (124)
292 PLN00016 RNA-binding protein; 85.1 5.9 0.00013 44.2 10.7 94 35-138 50-161 (378)
293 KOG1057 Arp2/3 complex-interac 85.0 0.44 9.6E-06 55.9 1.6 183 127-327 107-321 (1018)
294 PRK06719 precorrin-2 dehydroge 84.9 3.7 8.1E-05 40.0 7.9 31 37-67 13-43 (157)
295 PRK10669 putative cation:proto 84.5 2 4.4E-05 50.7 6.9 117 35-165 415-531 (558)
296 PLN02775 Probable dihydrodipic 84.4 18 0.00039 38.8 13.2 125 37-199 11-139 (286)
297 TIGR01470 cysG_Nterm siroheme 84.3 3.7 8E-05 41.9 7.9 33 37-69 9-41 (205)
298 PF07065 D123: D123; InterPro 83.6 20 0.00043 38.8 13.4 143 177-330 75-240 (299)
299 PRK06718 precorrin-2 dehydroge 83.5 4 8.6E-05 41.6 7.7 31 37-67 10-40 (202)
300 PLN02695 GDP-D-mannose-3',5'-e 83.3 6.7 0.00014 43.7 10.1 70 38-116 22-92 (370)
301 PF02254 TrkA_N: TrkA-N domain 83.2 1.8 3.9E-05 39.3 4.6 85 40-132 1-85 (116)
302 PRK13303 L-aspartate dehydroge 83.0 6.4 0.00014 41.8 9.4 113 38-164 2-115 (265)
303 PRK05472 redox-sensing transcr 82.8 9.1 0.0002 39.2 10.2 89 37-138 84-174 (213)
304 PRK12446 undecaprenyldiphospho 82.7 4.5 9.7E-05 44.8 8.4 100 37-138 1-118 (352)
305 COG4072 Uncharacterized protei 82.6 2.8 6.1E-05 39.0 5.4 52 650-701 92-144 (161)
306 TIGR03309 matur_yqeB selenium- 82.6 1.9 4E-05 45.1 4.8 51 685-736 163-213 (256)
307 TIGR03025 EPS_sugtrans exopoly 82.4 7.2 0.00016 44.6 10.2 90 37-138 125-219 (445)
308 PLN02572 UDP-sulfoquinovose sy 82.4 7.7 0.00017 44.4 10.4 33 35-67 45-78 (442)
309 PF00070 Pyr_redox: Pyridine n 82.3 3.2 6.9E-05 35.2 5.5 59 39-114 1-59 (80)
310 PLN02657 3,8-divinyl protochlo 82.3 19 0.00041 40.5 13.3 73 37-116 60-143 (390)
311 KOG0369 Pyruvate carboxylase [ 82.3 4.4 9.6E-05 47.2 8.0 78 642-719 1099-1176(1176)
312 PF04321 RmlD_sub_bind: RmlD s 82.1 5.9 0.00013 42.5 8.8 83 39-143 2-102 (286)
313 PRK09783 copper/silver efflux 82.1 1.7 3.6E-05 49.3 4.7 35 686-720 123-158 (409)
314 PF13241 NAD_binding_7: Putati 82.0 1.4 2.9E-05 39.7 3.2 83 37-138 7-89 (103)
315 COG0508 AceF Pyruvate/2-oxoglu 81.7 2.5 5.4E-05 47.8 5.9 41 693-733 15-59 (404)
316 PRK05878 pyruvate phosphate di 81.7 45 0.00098 39.1 16.2 38 284-325 257-294 (530)
317 PF13460 NAD_binding_10: NADH( 81.5 9.8 0.00021 37.2 9.6 68 40-118 1-69 (183)
318 PRK03562 glutathione-regulated 81.5 2 4.4E-05 51.4 5.4 116 37-166 400-515 (621)
319 COG1038 PycA Pyruvate carboxyl 81.4 3.7 7.9E-05 49.0 7.1 130 584-718 1015-1148(1149)
320 cd01075 NAD_bind_Leu_Phe_Val_D 81.4 2.3 5E-05 43.2 5.1 112 37-169 28-139 (200)
321 PRK05704 dihydrolipoamide succ 80.5 1.7 3.7E-05 49.1 4.1 35 650-684 46-80 (407)
322 PF01551 Peptidase_M23: Peptid 80.4 3.9 8.3E-05 36.0 5.6 63 650-721 14-76 (96)
323 cd06849 lipoyl_domain Lipoyl d 80.3 1.8 4E-05 34.7 3.3 31 650-680 44-74 (74)
324 PRK05693 short chain dehydroge 80.3 5.6 0.00012 41.9 7.8 33 37-69 1-34 (274)
325 COG0845 AcrA Membrane-fusion p 80.1 1.5 3.3E-05 47.6 3.5 70 651-720 68-211 (372)
326 TIGR03023 WcaJ_sugtrans Undeca 80.0 9.9 0.00021 43.6 10.3 90 37-138 128-222 (451)
327 PRK10217 dTDP-glucose 4,6-dehy 80.0 7.5 0.00016 42.6 9.0 74 37-117 1-82 (355)
328 PRK05993 short chain dehydroge 79.9 7 0.00015 41.3 8.4 35 36-70 3-38 (277)
329 COG1566 EmrA Multidrug resista 79.8 1.7 3.8E-05 47.9 3.8 32 650-681 54-85 (352)
330 PF01408 GFO_IDH_MocA: Oxidore 79.6 4.2 9.2E-05 37.0 5.8 87 39-138 2-90 (120)
331 PLN00141 Tic62-NAD(P)-related 79.6 22 0.00047 37.0 11.9 34 37-70 17-51 (251)
332 PRK03659 glutathione-regulated 79.4 2.1 4.6E-05 51.0 4.6 115 37-165 400-514 (601)
333 PLN02778 3,5-epimerase/4-reduc 79.3 8.4 0.00018 41.5 8.9 56 36-116 8-64 (298)
334 TIGR01285 nifN nitrogenase mol 78.9 12 0.00025 42.9 10.2 85 37-138 311-395 (432)
335 PRK10124 putative UDP-glucose 78.2 15 0.00032 42.5 10.8 87 37-138 143-234 (463)
336 PRK09496 trkA potassium transp 78.0 5 0.00011 45.8 7.1 36 36-71 230-265 (453)
337 PRK13302 putative L-aspartate 78.0 14 0.0003 39.5 9.8 116 37-169 6-125 (271)
338 cd03466 Nitrogenase_NifN_2 Nit 78.0 13 0.00028 42.5 10.2 88 37-138 300-394 (429)
339 TIGR01347 sucB 2-oxoglutarate 77.6 2.4 5.1E-05 47.9 4.1 34 650-683 44-77 (403)
340 COG2102 Predicted ATPases of P 77.5 87 0.0019 32.3 14.7 144 37-199 1-147 (223)
341 PRK12475 thiamine/molybdopteri 77.2 10 0.00022 41.8 8.9 122 36-167 23-146 (338)
342 PF13727 CoA_binding_3: CoA-bi 76.8 12 0.00025 36.2 8.3 88 38-137 78-171 (175)
343 PRK08219 short chain dehydroge 76.8 4.8 0.0001 40.7 5.8 75 36-118 2-80 (227)
344 PRK12825 fabG 3-ketoacyl-(acyl 76.7 4.5 9.7E-05 41.4 5.6 33 36-68 5-38 (249)
345 PRK12826 3-ketoacyl-(acyl-carr 76.7 9.1 0.0002 39.3 8.0 34 36-69 5-39 (251)
346 COG0702 Predicted nucleoside-d 76.6 25 0.00055 36.5 11.5 164 38-219 1-186 (275)
347 PRK08267 short chain dehydroge 76.5 8.4 0.00018 40.1 7.7 34 37-70 1-35 (260)
348 PF07831 PYNP_C: Pyrimidine nu 76.5 2.4 5.3E-05 35.9 2.9 29 653-683 28-56 (75)
349 PRK05565 fabG 3-ketoacyl-(acyl 76.5 7.6 0.00017 39.7 7.3 31 36-66 4-35 (247)
350 cd01976 Nitrogenase_MoFe_alpha 76.2 6.8 0.00015 44.6 7.3 88 37-138 300-391 (421)
351 PRK08177 short chain dehydroge 76.0 8.1 0.00018 39.3 7.3 35 37-71 1-36 (225)
352 PRK08017 oxidoreductase; Provi 75.8 12 0.00025 38.8 8.5 35 36-70 1-36 (256)
353 PRK05305 phosphatidylserine de 75.5 4.9 0.00011 41.1 5.4 54 656-714 148-201 (206)
354 PRK05305 phosphatidylserine de 75.4 7 0.00015 39.9 6.5 63 647-710 51-115 (206)
355 TIGR02622 CDP_4_6_dhtase CDP-g 75.3 13 0.00027 40.9 9.0 76 37-117 4-83 (349)
356 TIGR01283 nifE nitrogenase mol 75.3 13 0.00028 42.8 9.3 88 37-138 326-417 (456)
357 COG0845 AcrA Membrane-fusion p 75.3 6.1 0.00013 42.8 6.5 46 673-719 54-99 (372)
358 PLN00198 anthocyanidin reducta 75.1 13 0.00029 40.5 9.1 35 36-70 8-43 (338)
359 PRK05653 fabG 3-ketoacyl-(acyl 75.0 10 0.00022 38.7 7.7 34 37-70 5-39 (246)
360 COG0223 Fmt Methionyl-tRNA for 74.8 5.8 0.00013 42.9 5.9 76 38-118 2-89 (307)
361 PF01370 Epimerase: NAD depend 74.7 10 0.00022 38.5 7.6 73 40-119 1-75 (236)
362 TIGR02717 AcCoA-syn-alpha acet 74.6 22 0.00047 40.9 10.9 105 38-150 8-137 (447)
363 PLN02653 GDP-mannose 4,6-dehyd 74.6 16 0.00035 39.8 9.6 75 37-116 6-90 (340)
364 PRK05717 oxidoreductase; Valid 74.4 12 0.00027 38.8 8.3 41 29-69 1-43 (255)
365 COG1091 RfbD dTDP-4-dehydrorha 74.1 14 0.0003 39.6 8.4 134 40-202 3-155 (281)
366 TIGR02263 benz_CoA_red_C benzo 74.0 8.8 0.00019 43.1 7.4 102 37-138 233-355 (380)
367 TIGR02356 adenyl_thiF thiazole 74.0 8.3 0.00018 39.1 6.6 31 36-66 20-50 (202)
368 PRK06182 short chain dehydroge 73.7 11 0.00025 39.5 7.9 76 37-119 3-84 (273)
369 TIGR01214 rmlD dTDP-4-dehydror 73.5 10 0.00022 40.1 7.5 57 39-117 1-58 (287)
370 PRK06483 dihydromonapterin red 73.3 16 0.00035 37.3 8.8 35 36-70 1-36 (236)
371 TIGR00164 PS_decarb_rel phosph 73.2 6.2 0.00013 39.7 5.4 54 657-715 129-182 (189)
372 PRK01438 murD UDP-N-acetylmura 73.2 15 0.00031 42.5 9.2 92 37-144 16-111 (480)
373 TIGR01472 gmd GDP-mannose 4,6- 73.1 15 0.00033 40.2 8.9 74 38-116 1-85 (343)
374 TIGR03466 HpnA hopanoid-associ 73.0 15 0.00033 39.4 8.8 68 39-115 2-70 (328)
375 PRK00141 murD UDP-N-acetylmura 73.0 15 0.00033 42.4 9.3 86 37-139 15-103 (473)
376 COG0771 MurD UDP-N-acetylmuram 72.9 18 0.00039 41.4 9.5 89 37-139 7-98 (448)
377 PF06898 YqfD: Putative stage 72.8 5.1 0.00011 45.1 5.1 58 652-716 162-226 (385)
378 PRK06179 short chain dehydroge 72.8 22 0.00048 37.1 9.8 73 37-118 4-82 (270)
379 PRK10537 voltage-gated potassi 72.5 8.8 0.00019 43.2 6.9 113 37-165 240-352 (393)
380 TIGR02437 FadB fatty oxidation 72.3 6.5 0.00014 47.9 6.2 39 34-72 310-348 (714)
381 TIGR02355 moeB molybdopterin s 72.3 36 0.00079 35.5 11.1 31 37-67 24-54 (240)
382 TIGR03022 WbaP_sugtrans Undeca 72.2 20 0.00044 41.1 10.1 87 37-135 125-216 (456)
383 PRK05678 succinyl-CoA syntheta 72.2 28 0.0006 37.6 10.3 109 37-151 8-133 (291)
384 PRK12745 3-ketoacyl-(acyl-carr 72.2 18 0.00038 37.4 8.8 34 36-69 1-35 (256)
385 cd01080 NAD_bind_m-THF_DH_Cycl 72.0 5.6 0.00012 39.2 4.7 33 37-69 44-77 (168)
386 KOG1447 GTP-specific succinyl- 72.0 24 0.00052 37.0 9.1 100 151-252 24-142 (412)
387 PRK08264 short chain dehydroge 72.0 18 0.0004 36.8 8.8 75 37-119 6-83 (238)
388 PRK07577 short chain dehydroge 71.9 30 0.00065 35.1 10.3 70 38-119 4-78 (234)
389 PRK00421 murC UDP-N-acetylmura 71.9 17 0.00038 41.7 9.4 88 37-139 7-95 (461)
390 PRK00726 murG undecaprenyldiph 71.7 18 0.0004 39.6 9.2 99 38-138 2-118 (357)
391 PRK06180 short chain dehydroge 71.5 15 0.00032 38.8 8.2 35 36-70 3-38 (277)
392 PRK09424 pntA NAD(P) transhydr 71.2 13 0.00028 43.3 8.0 44 29-72 157-200 (509)
393 TIGR02130 dapB_plant dihydrodi 71.1 42 0.0009 35.9 11.1 28 39-66 2-30 (275)
394 TIGR02049 gshA_ferroox glutama 71.0 19 0.00042 39.6 8.7 50 190-239 260-312 (403)
395 PRK06464 phosphoenolpyruvate s 71.0 79 0.0017 39.1 15.1 45 281-329 288-332 (795)
396 PF03435 Saccharop_dh: Sacchar 71.0 9.9 0.00022 42.5 7.0 112 40-168 1-121 (386)
397 PRK11908 NAD-dependent epimera 70.8 13 0.00028 40.7 7.8 32 37-68 1-34 (347)
398 PRK07060 short chain dehydroge 70.7 15 0.00033 37.5 7.9 75 37-118 9-86 (245)
399 PRK12824 acetoacetyl-CoA reduc 70.5 20 0.00043 36.6 8.7 34 36-69 1-35 (245)
400 PF00899 ThiF: ThiF family; I 70.4 22 0.00048 33.3 8.2 30 38-67 3-32 (135)
401 PLN02240 UDP-glucose 4-epimera 70.3 18 0.00038 39.6 8.7 74 36-116 4-88 (352)
402 PRK09987 dTDP-4-dehydrorhamnos 70.3 15 0.00032 39.5 7.9 59 39-116 2-61 (299)
403 cd01965 Nitrogenase_MoFe_beta_ 70.2 23 0.00049 40.4 9.8 86 37-138 299-393 (428)
404 COG0287 TyrA Prephenate dehydr 70.2 38 0.00082 36.3 10.8 36 36-71 2-37 (279)
405 TIGR01861 ANFD nitrogenase iro 70.0 17 0.00036 42.5 8.7 88 37-138 328-420 (513)
406 PLN02686 cinnamoyl-CoA reducta 69.9 13 0.00028 41.3 7.6 39 30-68 46-85 (367)
407 PRK05562 precorrin-2 dehydroge 69.8 20 0.00043 37.1 8.2 32 38-69 26-57 (223)
408 PRK06953 short chain dehydroge 69.7 17 0.00037 36.8 7.9 33 37-69 1-34 (222)
409 PRK08643 acetoin reductase; Va 69.7 17 0.00038 37.6 8.1 35 36-70 1-36 (256)
410 PRK01368 murD UDP-N-acetylmura 69.7 51 0.0011 37.9 12.5 91 37-144 6-96 (454)
411 PRK06194 hypothetical protein; 69.5 21 0.00046 37.7 8.8 33 37-69 6-39 (287)
412 PRK07231 fabG 3-ketoacyl-(acyl 69.4 16 0.00034 37.5 7.6 78 37-119 5-91 (251)
413 PRK07688 thiamine/molybdopteri 69.3 22 0.00048 39.2 9.0 34 36-69 23-57 (339)
414 PRK15181 Vi polysaccharide bio 69.3 19 0.00041 39.5 8.7 32 37-68 15-47 (348)
415 PRK05447 1-deoxy-D-xylulose 5- 69.2 41 0.00089 37.7 11.0 126 37-167 1-146 (385)
416 PRK14573 bifunctional D-alanyl 69.2 37 0.00079 42.2 11.9 91 37-145 4-97 (809)
417 KOG1198 Zinc-binding oxidoredu 69.0 37 0.0008 37.6 10.7 73 37-119 158-235 (347)
418 PLN02253 xanthoxin dehydrogena 68.9 17 0.00037 38.3 8.0 33 37-69 18-51 (280)
419 PRK07074 short chain dehydroge 68.9 19 0.00042 37.2 8.3 79 36-119 1-87 (257)
420 COG4942 Membrane-bound metallo 68.9 3.3 7.2E-05 46.3 2.5 62 648-720 330-393 (420)
421 PRK14478 nitrogenase molybdenu 68.8 18 0.0004 41.8 8.7 88 37-138 324-415 (475)
422 PF01488 Shikimate_DH: Shikima 68.7 8.6 0.00019 36.3 5.0 31 37-67 12-42 (135)
423 TIGR03649 ergot_EASG ergot alk 68.7 35 0.00076 36.1 10.3 68 39-116 1-74 (285)
424 PF02826 2-Hacid_dh_C: D-isome 68.5 9.7 0.00021 37.8 5.6 35 36-70 35-69 (178)
425 PRK06552 keto-hydroxyglutarate 68.4 51 0.0011 33.9 10.9 24 45-68 23-46 (213)
426 PRK12770 putative glutamate sy 68.1 9.9 0.00022 41.9 6.1 43 27-70 9-51 (352)
427 PRK06947 glucose-1-dehydrogena 68.1 21 0.00046 36.6 8.3 33 36-68 1-34 (248)
428 PRK12829 short chain dehydroge 68.1 14 0.00031 38.2 7.1 76 37-119 11-96 (264)
429 cd01483 E1_enzyme_family Super 68.0 32 0.00069 32.5 8.8 29 39-67 1-29 (143)
430 PRK07576 short chain dehydroge 67.9 16 0.00035 38.2 7.5 34 37-70 9-43 (264)
431 PLN02214 cinnamoyl-CoA reducta 67.6 25 0.00053 38.6 9.1 35 36-70 9-44 (342)
432 PLN02528 2-oxoisovalerate dehy 67.6 5.7 0.00012 45.1 4.1 35 650-684 42-76 (416)
433 PRK06138 short chain dehydroge 67.6 18 0.00039 37.2 7.6 76 37-119 5-91 (252)
434 PRK01710 murD UDP-N-acetylmura 67.4 37 0.00079 39.1 10.8 89 37-139 14-106 (458)
435 PRK06523 short chain dehydroge 67.3 35 0.00077 35.3 9.9 34 37-70 9-43 (260)
436 PRK07326 short chain dehydroge 67.2 13 0.00028 37.9 6.4 34 37-70 6-40 (237)
437 COG1648 CysG Siroheme synthase 67.1 28 0.0006 35.7 8.6 32 38-69 13-44 (210)
438 PRK12743 oxidoreductase; Provi 67.0 24 0.00052 36.6 8.5 33 36-68 1-34 (256)
439 COG0673 MviM Predicted dehydro 66.9 18 0.00039 39.4 7.8 147 36-195 2-154 (342)
440 PRK06398 aldose dehydrogenase; 66.8 50 0.0011 34.4 10.9 33 37-69 6-39 (258)
441 PRK07102 short chain dehydroge 66.8 19 0.00042 36.9 7.7 34 37-70 1-35 (243)
442 PRK07454 short chain dehydroge 66.7 17 0.00036 37.3 7.2 35 36-70 5-40 (241)
443 PLN00200 argininosuccinate syn 66.7 57 0.0012 36.9 11.6 34 36-69 4-39 (404)
444 PRK08268 3-hydroxy-acyl-CoA de 66.4 13 0.00029 43.3 6.9 36 36-71 6-41 (507)
445 PLN03209 translocon at the inn 66.3 42 0.0009 39.7 10.9 34 37-70 80-114 (576)
446 TIGR00518 alaDH alanine dehydr 66.2 13 0.00028 41.6 6.5 33 37-69 167-199 (370)
447 PF13477 Glyco_trans_4_2: Glyc 66.0 19 0.0004 33.4 6.7 79 39-117 1-82 (139)
448 PF09370 TIM-br_sig_trns: TIM- 66.0 53 0.0012 34.7 10.4 115 92-224 91-209 (268)
449 PRK09496 trkA potassium transp 65.9 12 0.00026 42.7 6.5 33 39-71 2-34 (453)
450 cd01979 Pchlide_reductase_N Pc 65.9 21 0.00045 40.3 8.2 74 37-117 276-353 (396)
451 cd01994 Alpha_ANH_like_IV This 65.8 1.4E+02 0.0029 30.2 13.3 136 44-198 7-148 (194)
452 PF01113 DapB_N: Dihydrodipico 65.7 18 0.00038 33.7 6.4 33 39-71 2-36 (124)
453 PRK04690 murD UDP-N-acetylmura 65.5 36 0.00077 39.3 10.2 89 37-139 8-98 (468)
454 PRK05557 fabG 3-ketoacyl-(acyl 65.4 26 0.00056 35.6 8.3 33 38-70 6-39 (248)
455 COG2308 Uncharacterized conser 65.4 22 0.00048 40.0 7.9 61 159-222 340-402 (488)
456 cd01492 Aos1_SUMO Ubiquitin ac 65.2 28 0.0006 35.3 8.2 120 36-167 20-140 (197)
457 PRK12429 3-hydroxybutyrate deh 65.2 19 0.0004 37.2 7.2 35 37-71 4-39 (258)
458 PRK14106 murD UDP-N-acetylmura 65.0 26 0.00057 39.9 9.0 88 37-138 5-96 (450)
459 PRK06172 short chain dehydroge 65.0 22 0.00047 36.7 7.7 33 38-70 8-41 (253)
460 COG0300 DltE Short-chain dehyd 64.9 23 0.00051 37.6 7.8 81 34-116 3-91 (265)
461 PRK11856 branched-chain alpha- 64.9 7.1 0.00015 44.3 4.2 35 650-684 46-80 (411)
462 PRK07024 short chain dehydroge 64.9 21 0.00045 37.1 7.6 34 36-69 1-35 (257)
463 TIGR03013 EpsB_2 sugar transfe 64.8 40 0.00086 38.6 10.4 89 37-138 124-217 (442)
464 PLN02206 UDP-glucuronate decar 64.8 35 0.00075 39.1 9.8 31 37-67 119-150 (442)
465 PRK05335 tRNA (uracil-5-)-meth 64.6 11 0.00023 42.9 5.5 36 36-71 1-36 (436)
466 PRK09135 pteridine reductase; 64.5 28 0.00062 35.5 8.4 33 37-69 6-39 (249)
467 PRK06057 short chain dehydroge 64.3 25 0.00054 36.4 8.0 75 37-118 7-88 (255)
468 TIGR01418 PEP_synth phosphoeno 64.0 1.6E+02 0.0034 36.5 15.7 43 281-325 286-328 (782)
469 PRK06482 short chain dehydroge 64.0 23 0.0005 37.2 7.7 34 36-69 1-35 (276)
470 TIGR01278 DPOR_BchB light-inde 64.0 33 0.00071 40.2 9.6 86 37-138 295-386 (511)
471 PRK11154 fadJ multifunctional 64.0 12 0.00027 45.5 6.3 37 35-71 307-344 (708)
472 COG0289 DapB Dihydrodipicolina 64.0 90 0.002 33.1 11.7 93 37-135 2-120 (266)
473 PF13375 RnfC_N: RnfC Barrel s 63.9 11 0.00025 33.8 4.5 70 671-740 15-87 (101)
474 COG1086 Predicted nucleoside-d 63.9 22 0.00048 41.4 7.8 91 4-114 231-330 (588)
475 PRK07067 sorbitol dehydrogenas 63.8 25 0.00055 36.4 7.9 34 37-70 6-40 (257)
476 PRK05865 hypothetical protein; 63.6 87 0.0019 39.0 13.4 110 39-166 2-121 (854)
477 PRK13394 3-hydroxybutyrate deh 63.5 27 0.00058 36.1 8.1 34 37-70 7-41 (262)
478 cd05211 NAD_bind_Glu_Leu_Phe_V 63.2 9.9 0.00022 39.2 4.6 31 37-67 23-53 (217)
479 PRK07236 hypothetical protein; 63.1 13 0.00028 41.5 5.9 35 35-69 4-38 (386)
480 PRK12784 hypothetical protein; 63.1 15 0.00033 31.0 4.7 33 651-683 45-77 (84)
481 PRK12742 oxidoreductase; Provi 63.1 24 0.00051 35.9 7.5 73 37-118 6-84 (237)
482 TIGR00460 fmt methionyl-tRNA f 62.7 25 0.00055 38.3 7.8 34 39-72 2-35 (313)
483 cd01491 Ube1_repeat1 Ubiquitin 62.6 15 0.00032 39.6 5.8 119 34-167 16-135 (286)
484 PRK08265 short chain dehydroge 62.6 26 0.00056 36.6 7.8 34 37-70 6-40 (261)
485 PRK02910 light-independent pro 62.6 45 0.00097 39.1 10.4 86 37-138 293-384 (519)
486 PRK07523 gluconate 5-dehydroge 62.5 13 0.00029 38.4 5.6 33 37-69 10-43 (255)
487 PRK03369 murD UDP-N-acetylmura 62.4 29 0.00063 40.3 8.7 86 37-139 12-99 (488)
488 PRK00436 argC N-acetyl-gamma-g 62.3 25 0.00055 38.8 7.9 104 36-150 1-106 (343)
489 COG1832 Predicted CoA-binding 62.2 20 0.00043 34.1 5.8 97 37-138 16-124 (140)
490 PRK12828 short chain dehydroge 62.2 32 0.0007 34.8 8.2 34 37-70 7-41 (239)
491 COG0794 GutQ Predicted sugar p 62.1 18 0.0004 36.6 6.1 49 40-90 91-141 (202)
492 PRK05868 hypothetical protein; 62.1 12 0.00025 41.8 5.3 33 37-69 1-33 (372)
493 TIGR01349 PDHac_trf_mito pyruv 61.9 8.3 0.00018 44.1 4.1 35 650-684 43-78 (435)
494 PRK06436 glycerate dehydrogena 61.9 51 0.0011 35.8 10.0 31 37-67 122-152 (303)
495 PRK08263 short chain dehydroge 61.8 25 0.00053 37.0 7.5 34 36-69 2-36 (275)
496 PRK00005 fmt methionyl-tRNA fo 61.8 23 0.00051 38.4 7.4 34 39-72 2-35 (309)
497 PRK00048 dihydrodipicolinate r 61.6 94 0.002 32.8 11.8 85 38-138 2-88 (257)
498 cd01968 Nitrogenase_NifE_I Nit 61.6 31 0.00067 39.0 8.6 88 37-138 287-378 (410)
499 TIGR01282 nifD nitrogenase mol 61.5 14 0.0003 42.7 5.9 88 37-138 335-426 (466)
500 PRK10675 UDP-galactose-4-epime 61.3 19 0.00041 39.0 6.7 71 39-116 2-80 (338)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=8.2e-141 Score=1139.73 Aligned_cols=629 Identities=49% Similarity=0.780 Sum_probs=564.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
||+||||+||||||||+||+||++|+++|+||+++|.+++|+++||++++|+|.+..+||++.++|+++|++.++|+|||
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP 80 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP 80 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
||||||||+.|+++|++.|+.|+||++++++.|+||...|+++.++|+|+.|++....++.+++.++++++|||++||++
T Consensus 81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs 160 (645)
T COG4770 81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS 160 (645)
T ss_pred CccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+|||||+++++.+|+.++++.+++|+.++||++.++||+|+..+||+++|||+|+|||++++++||||+||||||++|
T Consensus 161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE 240 (645)
T COG4770 161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240 (645)
T ss_pred cCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
++|+|.|+++++++|.+.++++++++||.|++||||+++. ++.|||||||+|+|++||+||++||+||++||+|+|.|+
T Consensus 241 EAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~-~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Ge 319 (645)
T COG4770 241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDA-DGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGE 319 (645)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcC-CCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999998 888999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe----
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---- 431 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---- 431 (765)
+|++.|.+++++||||++|||+|||.++|+|++|+|..+++|. +++ ||+|++|..|+.|++||||||+|||+||
T Consensus 320 kL~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~-~~~-vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~ 397 (645)
T COG4770 320 KLPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPA-GPG-VRVDSGVREGDEISPFYDPMIAKLIVHGADRE 397 (645)
T ss_pred cCCcccccccccceeEEEEEeccCcccCccCCCceeEeecCCC-CCc-eecccCcccCCccccccchHHHHHhhcCCCHH
Confidence 9999999999999999999999999999999999999999998 688 9999999999999999999999999999
Q ss_pred -----------e-EEeccccCHHHHHHHhcCcCcccCccccccccccccccccCCCCchhhhhhhhhhHHHHHHHHHHHH
Q 041518 432 -----------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAEMNSAARLSATLVAACIFE 499 (765)
Q Consensus 432 -----------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~ 499 (765)
+ .|.|+.||++||++++.||+|+.|+.+|+||.+++++++..... ...+++++++..
T Consensus 398 eAl~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~~~~~~-----------~~~~~aa~~~~~ 466 (645)
T COG4770 398 EALDRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFAPAPA-----------SADALAAAALLA 466 (645)
T ss_pred HHHHHHHHHHHhhEecCccccHHHHHHHhcCcccccCCCcceeeeecccccccCCCc-----------hhhhHHHHHhhh
Confidence 6 99999999999999999999999999999999999999843332 123333333333
Q ss_pred hhhccccCCCCCCCcccCccccCCCceeccCceeEEEEEECCcccCCCceeEEEEEEEecCccEEEEECCCceEEEEEEE
Q 041518 500 KEKSTLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLIEMGEDGSYISEVKA 579 (765)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~v~~~~~~~~~v~~~~ 579 (765)
..... .+ .. .+||+...+|+++........+...+. ...+++... ++...+ .+..
T Consensus 467 ~~~~~-~~----~~--~~pw~~~~~w~~~~~~~~~~~~~~~~~-------~~~v~l~~~-~g~~~~--------~~~~-- 521 (645)
T COG4770 467 QPALE-RR----AE--SDPWASLSGWVVTGDAAELRVLIDGEE-------RVEVRLPAR-EGRERF--------YVDS-- 521 (645)
T ss_pred chhhh-cc----cc--cCcccccCCceeecceeeeeEEecCCc-------ceEEEEecc-CCccee--------eeec--
Confidence 22100 11 12 379999899999876554333332332 333444322 221111 1111
Q ss_pred EEeCCceEEEEECCEEEEEEEEEeecccceEEEEEeCCeeEEEEEecCCCCCCccccccccccccCCCCCCcccCCCcce
Q 041518 580 TYLGEHKFRVEFDVVSMDVHLAVYNKGRIKHIHAWHGLHHHHFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGL 659 (765)
Q Consensus 580 ~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~ 659 (765)
........+.++|.....++...+ +.++|+..|..+.+...++... .+...+.+..|+|||||+
T Consensus 522 -~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~l~aPMpG~ 585 (645)
T COG4770 522 -DWDPELASAALSGRKRAVRVARAG----GGLTLFWGGGSPRIAELDKLGG-----------AKVAAASSGELLAPMPGT 585 (645)
T ss_pred -cCCccceeEEecCccccceeeecC----CceEEecCCcCccccccccccc-----------ccccCCCCCceecCCCce
Confidence 122245778899999888888887 8999999998777765544332 344556678899999999
Q ss_pred EEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 660 VVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 660 v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
|+.|.|++|+.|.+||+|++||||||||.|+||.+|+|+++.+++|++|..|++|++|++
T Consensus 586 v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 586 VVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred EEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 2
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-133 Score=1060.79 Aligned_cols=652 Identities=52% Similarity=0.791 Sum_probs=581.4
Q ss_pred EEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCCc
Q 041518 40 ILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGF 119 (765)
Q Consensus 40 ILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g~ 119 (765)
|||+||||||||++|+||+||+++|+||+++|.++.|+++||+++++++++...+|++.++|++++++.++++|||||||
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF 80 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF 80 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCC
Q 041518 120 LSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGG 199 (765)
Q Consensus 120 lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~G 199 (765)
||||..|++.|++.|+.|+||++.+++.|+||...|++|+++|+|+.|++.+..+|.+++.+.++++|||+|||+..|+|
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG 160 (670)
T KOG0238|consen 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG 160 (670)
T ss_pred cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeeeecCC
Q 041518 200 GKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPA 279 (765)
Q Consensus 200 g~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e~~Pa 279 (765)
|+||+++.+++|+.+.++.+++|+.++||++.+|+|+||+.+||+++|+|+|++|+.+++++||||+||||||++|++|+
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaPa 240 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPA 240 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCCCCCC
Q 041518 280 PNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPL 359 (765)
Q Consensus 280 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~~l~~ 359 (765)
|.++++.|.+|.+.|.++++++||.|+++|||++|+ .+.|||||||+|+|++||+||++||+||++||||+|.|++|++
T Consensus 241 p~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~-~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp~ 319 (670)
T KOG0238|consen 241 PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDS-KDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLPL 319 (670)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcC-CCcEEEEEeeceeeecccchhhccchHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred CCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe--------
Q 041518 360 SQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA-------- 431 (765)
Q Consensus 360 ~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g-------- 431 (765)
.|++++.+|||++||||||||.++|+|++|++..+.+|..+++ ||+|+||++|+.|+++|||||||||+||
T Consensus 320 ~q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~-vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~ 398 (670)
T KOG0238|consen 320 KQEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPG-VRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALN 398 (670)
T ss_pred CcceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCCCC-eeeecCcccCCcccccccchheeeeEecCCHHHHHH
Confidence 9999999999999999999999999999999999999987788 9999999999999999999999999999
Q ss_pred -------e-EEeccccCHHHHHHHhcCcCcccCccccccccccccccccCCCCchhhhhhhhhhHHHHHHHHHHHHhhhc
Q 041518 432 -------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAEMNSAARLSATLVAACIFEKEKS 503 (765)
Q Consensus 432 -------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~ 503 (765)
+ .|.|+.|||+||+.|+.||+|..|+++|+||++|.++++......+. + .....+++.++......+
T Consensus 399 kl~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~~~~~~~-~----~~~~~a~a~~l~~~~~~~ 473 (670)
T KOG0238|consen 399 KLKDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAPESITPA-E----QLSQAAVASSLNAWASGR 473 (670)
T ss_pred HHHHHHhhcEEecCccchHHHHHHhcChhhhcCccccccchhcCccccCccccCcH-H----HHHHHHHHHHHHHHhhch
Confidence 6 99999999999999999999999999999999999999887554321 1 011111111111110000
Q ss_pred cccCCCCCCCcccCccccCCCceeccCceeEEEEEECCcccCCCceeEEEEEEEecCccEEEEECCCceEEEEEEEEEe-
Q 041518 504 TLKESPPGNHCLLSIWYTDPPFRVHHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLIEMGEDGSYISEVKATYL- 582 (765)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~v~~~~~~~~~v~~~~~~~- 582 (765)
+ .....++.|..++|.....+|++....+.+.+..+.. .+++.|++.+++.|++.++++....+.. .+..
T Consensus 474 a-~~f~~~n~~~~~v~~~~~~~r~n~s~~~~~~~~~~e~-------~v~v~V~~~~~s~~si~~~~~~~~~i~~-~~~~~ 544 (670)
T KOG0238|consen 474 A-YQFRLQNKDRASVFSSSPPFRFNCSLVVKITLKTGEN-------PVHVAVRFNSDSSLSIEVDGSSYLTIKG-DINVP 544 (670)
T ss_pred h-hHHhhccCCccceeccCCceEEEEeeEEEEcccCCcc-------ceEEEEEECCCCeEEEEecCCceEeecc-ceecc
Confidence 0 0000011222467888888999887777777665555 7889999998889999998733223332 1223
Q ss_pred -CCceEEEEECCEEEEEEEEEeecccceEEEEEeCCeeEEEEEecCCCCCCccccccccccccCCCCCCcccCCCcceEE
Q 041518 583 -GEHKFRVEFDVVSMDVHLAVYNKGRIKHIHAWHGLHHHHFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVV 661 (765)
Q Consensus 583 -~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~ 661 (765)
....+++..+|..+++.....+ +.++++.++..+.+....+... ....+......++.+.|||||.|.
T Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~g----~~~~l~~~~~~~~ve~~~~k~l-------~~~~s~~~~~~s~v~~aPMpG~Ie 613 (670)
T KOG0238|consen 545 GPLLSISVDGEGNGYQGRVIILG----DEISLFSNEGVIKVEVLPPKYL-------SPQSSETKEDGSGVIVAPMPGIIE 613 (670)
T ss_pred cccceEEEEeccCceEEEEEEeC----CeEEEEecCcceeEecCChHhh-------hhhhhhhccCCCCceecCCCCeee
Confidence 3356677777778888877777 8899999999999988776432 122244556677889999999999
Q ss_pred EEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 662 KVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 662 ~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
+++|++||.|++||.|++|+|||||+.++||.+|+|+.+.++.|++|..|.+|++++
T Consensus 614 kv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 614 KVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred eeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 999999999999999999999999999999999999999999999999999999874
No 3
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=1.8e-102 Score=859.97 Aligned_cols=436 Identities=44% Similarity=0.757 Sum_probs=419.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCC-cCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPP-ARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~-~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
+++||||+||||||+|+.|+|.++|++||+||+..|..+.|..-||++|.++... +.++|+++|.|+++|++.++|+||
T Consensus 6 ~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIh 85 (1149)
T COG1038 6 KIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIH 85 (1149)
T ss_pred hhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeec
Confidence 5899999999999999999999999999999999999999999999999998643 457999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEee
Q 041518 115 PGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKP 194 (765)
Q Consensus 115 pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP 194 (765)
|||||||||+.|++.|.++||.|+||.++.++.++||..+|.++.++|+|+.|+.....++.+++.+++++.|||+|||+
T Consensus 86 PGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA 165 (1149)
T COG1038 86 PGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKA 165 (1149)
T ss_pred CCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred cCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeee
Q 041518 195 THGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKII 274 (765)
Q Consensus 195 ~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~ 274 (765)
+.|+||||||+|++.++|.++++++.+|+..+||++.++||+||++++|++||+++|.+||++|+++||||+||||||++
T Consensus 166 ~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVV 245 (1149)
T COG1038 166 AAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVV 245 (1149)
T ss_pred ccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcC
Q 041518 275 EEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANG 354 (765)
Q Consensus 275 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G 354 (765)
|.+|++.|+++++++|++.+.++++.+||.|++++||++|. +|++||||||||+|++|.+||++||+|+++.|+.+|.|
T Consensus 246 E~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~-~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G 324 (1149)
T COG1038 246 EVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDE-DGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAG 324 (1149)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcC-CCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred CCCC------CCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEec-ccCCCeeCCccCCcceEE
Q 041518 355 EPLP------LSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETG-VEQGDTVSMHYDPMIANL 427 (765)
Q Consensus 355 ~~l~------~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~-v~~G~~v~~~~d~~~~~~ 427 (765)
..|. ..|++|..+|+||+|||.-|||.++|+|..|+|..++-++ |-| ||+|.+ -..|..|++||||||-|+
T Consensus 325 ~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~g-GfG-VRLD~Gn~~~GavItpyyDslLVK~ 402 (1149)
T COG1038 325 ATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAG-GFG-VRLDGGNAYAGAVITPYYDSLLVKV 402 (1149)
T ss_pred CccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCC-Cce-EEecCCcccccceeccccccceeeE
Confidence 9886 2355799999999999999999999999999999999998 888 999955 679999999999999999
Q ss_pred EEEe---------------e-EEeccccCHHHHHHHhcCcCcccCccccccccccccccccCCC
Q 041518 428 WYGA---------------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPS 475 (765)
Q Consensus 428 i~~g---------------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 475 (765)
-+|| | +|+||+|||+||.+++.||.|.+|+++|+||++. ++||..+.
T Consensus 403 t~~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g~y~T~FId~t-PeLf~~~~ 465 (1149)
T COG1038 403 TCWGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSGRYTTSFIDTT-PELFQFPK 465 (1149)
T ss_pred eecCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccCcceeeeccCC-HHHhcccc
Confidence 9999 8 9999999999999999999999999999999987 56766544
No 4
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=6.4e-93 Score=769.11 Aligned_cols=433 Identities=46% Similarity=0.743 Sum_probs=417.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCC-CcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP-PARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~-~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
.+||||+|||||+.|+.|+|.++++++|++|+..|..+.|..-||++|.++.. ++...|+.++.|+++|+++++|+|||
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 47999999999999999999999999999999999999999999999999753 33568999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
||||+||+..|+++|.++|+.|+||+++.+..++||..+|.++.++|+|+.|+....+++.+|+.+|+++.|+|+|+|+.
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369|consen 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+||++|++.++++++|+++.+|+..+||++.++||+||+.++|++||.++|.+||++++++||||+||||||++|
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369|consen 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
.+|++.|+++++++|.+.+.++++.+||..++++||++|. .|+.||||+|+|+|++|.+||.+||+|++..||++|.|.
T Consensus 273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~-~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~ 351 (1176)
T KOG0369|consen 273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQ-KGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGA 351 (1176)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEcc-CCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCC
Confidence 9999999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred CCC---CCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEec-ccCCCeeCCccCCcceEEEEEe
Q 041518 356 PLP---LSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETG-VEQGDTVSMHYDPMIANLWYGA 431 (765)
Q Consensus 356 ~l~---~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~-v~~G~~v~~~~d~~~~~~i~~g 431 (765)
.|+ +.|+.+..+|.||+||+.-|||.++|.|.+|+|..++--. +-| ||+|.. ...|..|+|+||||+-|+|++|
T Consensus 352 tLp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSge-GmG-iRLD~asafaGavIsPhYDSllVK~i~h~ 429 (1176)
T KOG0369|consen 352 SLPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGE-GMG-IRLDGASAFAGAVISPHYDSLLVKVICHG 429 (1176)
T ss_pred CcccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEeCC-Cce-EeecCccccccccccccccceEEEEEecC
Confidence 876 5788999999999999999999999999999999999776 788 999986 5789999999999999999999
Q ss_pred ---------------e-EEeccccCHHHHHHHhcCcCcccCccccccccccccccccC
Q 041518 432 ---------------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVK 473 (765)
Q Consensus 432 ---------------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 473 (765)
| +|+||+|||+||..+|.+|.|..|.++|.||+++ ++||+-
T Consensus 430 ~~~~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g~~~T~FIDe~-PeLFq~ 486 (1176)
T KOG0369|consen 430 STYEIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEGTVDTTFIDET-PELFQL 486 (1176)
T ss_pred CccHHHHHHHHHHHHHHhhcceecCcHHHHHHhcCcceeeeeeeeEEecCC-hHHhcc
Confidence 7 9999999999999999999999999999999998 456543
No 5
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=9e-90 Score=789.50 Aligned_cols=632 Identities=31% Similarity=0.460 Sum_probs=551.2
Q ss_pred CcCCCCEEEEEcCcHHHHHHHHHHHHCCCeE---------EEEecC--CCCCCcccccccEEEEcCCCCcCcCCCCHHHH
Q 041518 33 KQQRIEKILIANRGEIAYRIMRTAKRLGIRT---------VAVYSD--ADRDSLHVKSADEAIRIGPPPARLSYLNGSSI 101 (765)
Q Consensus 33 ~~~~~kkILI~g~G~~a~~iiraar~~Gi~v---------vav~s~--~d~~~~~~~~aD~~~~i~~~~~~~syld~~~I 101 (765)
..+.++||||+|.|-.|++.+|+.|++-|++ |+..+. ...++.+.++||+++.+|..++.++|.|.+-|
T Consensus 50 G~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVdlI 129 (2196)
T KOG0368|consen 50 GHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVDLI 129 (2196)
T ss_pred CCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCCCCcccHHHH
Confidence 3457899999999999999999999975443 333332 24678899999999999999999999999999
Q ss_pred HHHHHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccc-----------
Q 041518 102 VDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYH----------- 170 (765)
Q Consensus 102 l~~a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~----------- 170 (765)
+++|++..+|||++|||..|||+.+.+++.+.||.|+||+..++..++||...--+++.+|+|+.||.-
T Consensus 130 vdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~ 209 (2196)
T KOG0368|consen 130 VDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDK 209 (2196)
T ss_pred HHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred -------------cCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecc
Q 041518 171 -------------GNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKY 237 (765)
Q Consensus 171 -------------~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEey 237 (765)
..+.+.+|..+.++++|||+|||++.||||||+|+|++.+|+...|+++..|.+ +.++++++.
T Consensus 210 ~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~EvP----GSPIFlMK~ 285 (2196)
T KOG0368|consen 210 TNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEVP----GSPIFLMKL 285 (2196)
T ss_pred CCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhhCC----CCceeeeec
Confidence 112578899999999999999999999999999999999999999999988744 579999999
Q ss_pred cCCCeeEEEEEEEeccccEEEEEeeeccccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCC
Q 041518 238 ITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVS 317 (765)
Q Consensus 238 I~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~ 317 (765)
..+.||++||+++|.+|+++.++.|||++||||||++|++|+...+.+..++|.+.|.++++.+||.++++||+++.+++
T Consensus 286 a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d 365 (2196)
T KOG0368|consen 286 ADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDD 365 (2196)
T ss_pred ccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999989
Q ss_pred CcEEEEEecccCCccccccceecCCCHHHHHHHHHcCCCCCCC---------------------CCCcccceEEEEEEec
Q 041518 318 DQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLS---------------------QSEVPLLGHAFEARIY 376 (765)
Q Consensus 318 g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~~l~~~---------------------~~~~~~~g~ai~~ri~ 376 (765)
|+|||+|.|||+|++||.||+++|+||+..|+++|+|.|+... +..+.++||+++|||.
T Consensus 366 ~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RIT 445 (2196)
T KOG0368|consen 366 GEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARIT 445 (2196)
T ss_pred CcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEEee
Confidence 9999999999999999999999999999999999999998521 1123568999999999
Q ss_pred ccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe---------------e-EEec-ccc
Q 041518 377 AENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---------------K-TVAG-VPT 439 (765)
Q Consensus 377 ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---------------~-~i~g-~~t 439 (765)
.|||..+|+|++|+|..+++++ .++ |+-+..|..|..|+.|-||++|+++++| + .|+| +.|
T Consensus 446 sEdPddgFkPSsG~v~eLnFrS-ssn-vWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT 523 (2196)
T KOG0368|consen 446 SEDPDDGFKPSSGTVQELNFRS-SSN-VWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRT 523 (2196)
T ss_pred ccCCCCCcCCCCCeeEEeccCC-CCC-eeEEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheeeccccCc
Confidence 9999999999999999999999 688 9999999999999999999999999999 7 9999 999
Q ss_pred CHHHHHHHhcCcCcccCccccccccccccccccCCCCchhhhhhhhhhHHHHHHHHHHHHhhhccccCCCCCCCcccCcc
Q 041518 440 NINFLQKLAKHRAFESGDVETHFIEQHKDELFVKPSQSVSAEMNSAARLSATLVAACIFEKEKSTLKESPPGNHCLLSIW 519 (765)
Q Consensus 440 n~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (765)
+++||..||+..+|.++.++|+|||..++....+..++. .++.++.|+....... ... ...+
T Consensus 524 ~VeYLI~LLet~dF~~N~i~TgWLD~~Ia~kv~~~~p~~----------~l~VvcgAa~~g~~~~-~~~-------~~~y 585 (2196)
T KOG0368|consen 524 TVEYLIDLLETEDFESNKIDTGWLDKRIAMKVRAERPDI----------MLAVVCGAAVKGSSTS-RTV-------FEKY 585 (2196)
T ss_pred hHHHHHHHHHhhhhhhccCcchhHHHHHHHHhhccCCCc----------ceeeehhhhhhhHHHH-HHH-------HHHH
Confidence 999999999999999999999999999887766554432 2222222211110000 000 0000
Q ss_pred c--cCCCcee---ccCceeEEEEEECCcccCCCceeEEEEEEEecCccEEEEECCCceEEEEEEEEEeCCceEEEEECCE
Q 041518 520 Y--TDPPFRV---HHHARRIMEFEWENEHDDSGSKLLTLTVTYQADGNYLIEMGEDGSYISEVKATYLGEHKFRVEFDVV 594 (765)
Q Consensus 520 ~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~l~~~~~G~ 594 (765)
. -..|... .+.....++|.+++. .|++.|.+++.+.|.+.+|+ +.+++.+ .+++++.|.+.+||+
T Consensus 586 ~~~LerGQV~p~~~L~~~~~vdli~e~~-------kY~lkV~rss~~~y~l~mng-s~~~v~v--~~L~dggLli~~~Gk 655 (2196)
T KOG0368|consen 586 EHSLERGQVPPKDFLLNTFDVDLIYEGN-------KYTLKVVRSSSGTYVLRMNG-SEVTVGV--HQLSDGGLLISLDGK 655 (2196)
T ss_pred HHHHhcCCCCChHHhhhcceeEEEecCc-------EEEEEEEecCCceEEEEEcC-cEEEEEE--EEecCCcEEEEECCc
Confidence 0 0012211 123445788889999 99999999999999999998 7777776 789999999999999
Q ss_pred EEEEEEEEeecccceEEEEEeCCeeEEEEEecCCCCCCccccccccccccCCCCCCcccCCCcceEEEEEcCCCCeecCC
Q 041518 595 SMDVHLAVYNKGRIKHIHAWHGLHHHHFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLANDGTKVEEG 674 (765)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G 674 (765)
+|++++.... +.+++..++....|+. +.+++.+++|.||++++++|+.|+.|.+|
T Consensus 656 s~t~y~keev----~~~rltIdn~t~~fe~---------------------enDpt~LrsPs~GKLl~ylVedG~hv~~G 710 (2196)
T KOG0368|consen 656 SYTIYWKEEV----DGYRLTIDNNTCLFEK---------------------ENDPTVLRSPSPGKLLQYLVEDGEHVEAG 710 (2196)
T ss_pred eEEEEEeecc----ceEEEEECCeEEEEec---------------------CCCcceecCCCCccceEEEecCCCceecC
Confidence 9999987776 7888989998887752 35678899999999999999999999999
Q ss_pred CeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCccee
Q 041518 675 QPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQL 724 (765)
Q Consensus 675 ~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~~~ 724 (765)
|+.+++|.|||.+++.|+.+|+|.-+ .++|+.+.+|++|+.++-++.++
T Consensus 711 q~YAeiEvMKMvm~lva~~~G~i~~i-~~~G~~i~aG~vlakL~lDdpSk 759 (2196)
T KOG0368|consen 711 QPYAEIEVMKMVMPLVAKEPGRIQLI-KQEGDAIEAGSVLAKLTLDDPSK 759 (2196)
T ss_pred CeeeehehhheeeeeeccCCceEEEe-cCCCCccCccceeEEeecCChhh
Confidence 99999999999999999999999755 89999999999999998765333
No 6
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=1.4e-89 Score=756.75 Aligned_cols=430 Identities=53% Similarity=0.880 Sum_probs=420.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
||+||||+|+|++|++++|+|+++|+++++||+++|..+.|..++|++++++|.+..++|+|.++++.+++..++|+|||
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p 80 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP 80 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcc
Confidence 68999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
||||++||+.|+++|++.|+.|+||++++++.|+||..+|++|+++|||+||+......+.+++.++++++||||||||+
T Consensus 81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~ 160 (449)
T COG0439 81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA 160 (449)
T ss_pred cchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999865556889999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+||++|++.+||.+++..+++++...|+++.+++|+||++++|+++|+++|++|+++++++|||++|++|||+++
T Consensus 161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie 240 (449)
T COG0439 161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240 (449)
T ss_pred CCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
++|+|.++++.++++.+.+.++++.+||.|++|+||+++. +++|||||||||+|++||+||++||+|++.+||++++|+
T Consensus 241 eapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge 319 (449)
T COG0439 241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGE 319 (449)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CCCEEEEEEecccccCccceehhhhhhHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999996 689999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe----
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---- 431 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---- 431 (765)
++++.++++.++||+++|||++|||..+|.|++|+++.+..|. ++| ||+|.++..|.+|+++||||+||+|+||
T Consensus 320 ~l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~-g~g-vr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~ 397 (449)
T COG0439 320 PLSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPG-GPG-VRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRD 397 (449)
T ss_pred CCCCCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCC-CCc-eEEEeecccCcccCcchhhheeEEEEecCChH
Confidence 9999999999999999999999999999999999999999998 899 9999999999999999999999999999
Q ss_pred -----------e-EEeccccCHHHHHHHhcCcCcccCcccccccccccc
Q 041518 432 -----------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKD 468 (765)
Q Consensus 432 -----------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~ 468 (765)
+ +|.|+.||++|+++++++++|.+|+++|+||++++.
T Consensus 398 ~ai~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~ 446 (449)
T COG0439 398 EAIARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDLDTHFLETHLE 446 (449)
T ss_pred HHHHHHHHHHHheEecCccCChHHHHHHhcChHhhcCCcchhhhhhccc
Confidence 6 999999999999999999999999999999998754
No 7
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=2.7e-87 Score=813.55 Aligned_cols=432 Identities=46% Similarity=0.771 Sum_probs=413.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCC---CcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP---PARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~---~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
||||+|||++|+|++|+|+++|+++|+++++.|..++|..+||++|.+++. ...++|+|.+.|+++|+++++|+|||
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999999999999999999999999999999999765 33578999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
||||++|+..+++.|++.|++|+||++++++.++||..+|++++++|||+||++.....+.+++.++++++|||+||||+
T Consensus 81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~ 160 (1143)
T TIGR01235 81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS 160 (1143)
T ss_pred CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998754456899999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+||++|++.+||.++++.+.+++...|+++.++||+||++++|+++++++|++|+++++++|+|+++++|++.++
T Consensus 161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie 240 (1143)
T TIGR01235 161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240 (1143)
T ss_pred CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence 99999999999999999999999999998889889999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
.+|++.++++.+++|.+++.++++++||.|+++|||++++ +|++||||||||+|++|+++|+++|+|+++++++++.|.
T Consensus 241 ~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg~~yfIEVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~ 319 (1143)
T TIGR01235 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN-DGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGA 319 (1143)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC-CCcEEEEEeecCCCcchhHHHHHhCcHHHHHHHHHHcCC
Confidence 9999889999999999999999999999999999999997 778999999999999999999999999999999999999
Q ss_pred CCC------CCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEec-ccCCCeeCCccCCcceEEE
Q 041518 356 PLP------LSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETG-VEQGDTVSMHYDPMIANLW 428 (765)
Q Consensus 356 ~l~------~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~-v~~G~~v~~~~d~~~~~~i 428 (765)
+++ ..|+++.++||||+|||++|||.++|.|++|+|+.++.|. ++| ||+|++ ..+|+.|++||||||+|+|
T Consensus 320 ~L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~-g~g-vr~d~~~~~~g~~v~~~yds~~~k~~ 397 (1143)
T TIGR01235 320 SLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAG-GFG-IRLDGGNSYAGAIITPYYDSLLVKVS 397 (1143)
T ss_pred CCCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCC-CCC-eEecccccCCCCCcCCcccchhhhhe
Confidence 998 5678899999999999999999999999999999999998 899 999999 6799999999999999999
Q ss_pred EEe---------------e-EEeccccCHHHHHHHhcCcCcccCccccccccccccccccCC
Q 041518 429 YGA---------------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKP 474 (765)
Q Consensus 429 ~~g---------------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 474 (765)
+|| | .|+||+|||+||+++|+||+|++|+++|+||+++ ++||.-.
T Consensus 398 ~~~~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~~~~t~~~~~~-~~l~~~~ 458 (1143)
T TIGR01235 398 AWASTPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDGSYDTRFIDTT-PELFQFV 458 (1143)
T ss_pred eeCCCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCCCccchhhhcC-hhhcCCC
Confidence 999 7 9999999999999999999999999999999998 7776544
No 8
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=4.3e-87 Score=761.22 Aligned_cols=427 Identities=49% Similarity=0.842 Sum_probs=413.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|+|||||+|+|++|++++++||++|++++++++++|.++++.++||+.+.+++....++|+|.+.|+++|+++++|+|||
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~p 80 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHP 80 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEE
Confidence 68999999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
||||++|++.+++.|++.|++|+||++++++.++||..+|++|+++|||+||++.....+.+++.++++++|||+||||+
T Consensus 81 g~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~ 160 (499)
T PRK08654 81 GYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS 160 (499)
T ss_pred CCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999865456899999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+||++|++.+||.++++.+..++...|+++.+++|+||++++|+++++++|++|+++++++|+|+++++||++++
T Consensus 161 ~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie 240 (499)
T PRK08654 161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE 240 (499)
T ss_pred CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceEE
Confidence 99999999999999999999999998888889888999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
++|++.++++++++|.+.+.++++++||.|+++|||+++ +|++||||||||+|++|+++|+++|+|++++++++++|+
T Consensus 241 ~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~--~g~~yflEiNpRlqveh~vte~~tGvDlv~~~i~~A~G~ 318 (499)
T PRK08654 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGE 318 (499)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE--CCcEEEEEEECCCCCCCceeehhhCCCHHHHHHHHhcCC
Confidence 999988999999999999999999999999999999997 678999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe----
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---- 431 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---- 431 (765)
++++.+.++.++||+|+||||||||.++|.|++|+|+.++.|. ++| ||+|+++..|+.|+++||||+||+|+||
T Consensus 319 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~-~~~-vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~ 396 (499)
T PRK08654 319 ELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPG-GPG-VRVDSGVHMGYEIPPYYDSMISKLIVWGRTRE 396 (499)
T ss_pred CCCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCC-CCC-EEEECcccCCCCcCCccCchhheeeEeCCCHH
Confidence 9998888888999999999999999999999999999999998 789 9999999999999999999999999999
Q ss_pred -----------e-EEeccccCHHHHHHHhcCcCcccCcccccccccc
Q 041518 432 -----------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQH 466 (765)
Q Consensus 432 -----------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~ 466 (765)
+ .|.|++||++||++||+||+|++|+++|+||+++
T Consensus 397 ~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~ 443 (499)
T PRK08654 397 EAIARMRRALYEYVIVGVKTNIPFHKAVMENENFVRGNLHTHFIEEE 443 (499)
T ss_pred HHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 6 9999999999999999999999999999999998
No 9
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=5.8e-84 Score=788.68 Aligned_cols=436 Identities=48% Similarity=0.798 Sum_probs=413.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCC-CcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP-PARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 35 ~~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~-~~~~syld~~~Il~~a~~~~~DaV 113 (765)
+|||||||+|||++|++++++|+++|+++++++++.|..+++..+||+++.+++. .+.++|+|.+.|+++|+++++|+|
T Consensus 3 ~~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI 82 (1146)
T PRK12999 3 KKIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAI 82 (1146)
T ss_pred CcccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEE
Confidence 3689999999999999999999999999999999999999999999999999865 335789999999999999999999
Q ss_pred EeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEe
Q 041518 114 HPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIK 193 (765)
Q Consensus 114 ~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVK 193 (765)
||||||++|+..+++.|++.|++|+||++++++.++||..+|++++++|||+||++.....+.+++.++++++|||+|||
T Consensus 83 ~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVK 162 (1146)
T PRK12999 83 HPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLK 162 (1146)
T ss_pred EeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987534468999999999999999999
Q ss_pred ecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceee
Q 041518 194 PTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKI 273 (765)
Q Consensus 194 P~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~ 273 (765)
|+.|+||+||++|++.+||.++++.+.+++...|+++.+++|+||+|++|+++++++|++|+++++++|+|+++++||+.
T Consensus 163 P~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ 242 (1146)
T PRK12999 163 ASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKV 242 (1146)
T ss_pred ECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccE
Confidence 99999999999999999999999999998888898899999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHc
Q 041518 274 IEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVAN 353 (765)
Q Consensus 274 ~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~ 353 (765)
++.+|++.++++.+++|.+.+.++++++||+|++|+||++++ +|++||||||||+|++|+++|.++|+|++++++++++
T Consensus 243 ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~-dg~~yfIEINpRlqveh~vte~~tGvDlv~~~iriA~ 321 (1146)
T PRK12999 243 VEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDA-DGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAE 321 (1146)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCCEEEEEEECCCCCcchHHHHHhCcCHHHHHHHHHC
Confidence 999999899999999999999999999999999999999997 6789999999999999999999999999999999999
Q ss_pred CCCCCC------CCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEeccc-CCCeeCCccCCcceE
Q 041518 354 GEPLPL------SQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVE-QGDTVSMHYDPMIAN 426 (765)
Q Consensus 354 G~~l~~------~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~-~G~~v~~~~d~~~~~ 426 (765)
|.+++. .|+.+..+||||+|||++|||.++|.|.+|+|+.++.|. +.+ ||+|+++. +|..|+++||||++|
T Consensus 322 G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~-~~~-vr~d~~~~~~g~~v~~~~Ds~l~k 399 (1146)
T PRK12999 322 GATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPG-GFG-VRLDGGNAFAGAEITPYYDSLLVK 399 (1146)
T ss_pred CCCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCC-CCc-EEeeccccCCCCeeCCCccCCceE
Confidence 999875 356677889999999999999999999999999999998 788 99999986 999999999999999
Q ss_pred EEEEe---------------e-EEeccccCHHHHHHHhcCcCcccCccccccccccccccccCC
Q 041518 427 LWYGA---------------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVKP 474 (765)
Q Consensus 427 ~i~~g---------------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 474 (765)
+|+|| + .|+|++||++||+++|+||+|++|+++|+||+++ ++|+.-.
T Consensus 400 vi~~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~~~~t~~~~~~-~~l~~~~ 462 (1146)
T PRK12999 400 LTAWGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAGDYTTSFIDET-PELFDFP 462 (1146)
T ss_pred EEEEcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCCCccchhhhcC-hhhhhCC
Confidence 99999 6 9999999999999999999999999999999998 7776544
No 10
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=6.3e-82 Score=718.46 Aligned_cols=433 Identities=49% Similarity=0.807 Sum_probs=413.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|+|||||+|+|+++++++++|+++|++++++++++|..+++.++||+++.+++.+. ++|+|.+.|+++|+++++|+|||
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~a~~~~~D~I~p 79 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNLAVETGCDALHP 79 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHHHHHHCCCEEEe
Confidence 68999999999999999999999999999999999999999999999999987654 79999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
||||++|+..+++.++++|++|+||++++++.++||..+|++++++|||+||++.....+.+++.++++++|||+||||+
T Consensus 80 g~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~ 159 (472)
T PRK07178 80 GYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKAT 159 (472)
T ss_pred CCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998754456899999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+||++|++.+||.++++.+..++...|++..+++|+||++++|+++++++|++|+++++++++|++++++++.++
T Consensus 160 ~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e 239 (472)
T PRK07178 160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIE 239 (472)
T ss_pred CCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceEE
Confidence 99999999999999999999999988888788888999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
.+|++.++++.+++|.+.+.++++++||.|++++||++++ +|++||+|||||+|++|++++.++|+|++++++++++|+
T Consensus 240 ~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~-~g~~y~iEiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~ 318 (472)
T PRK07178 240 IAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGL 318 (472)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeC-CCCEEEEEEeCCcCCCccceeeeeCcCHHHHHHHHHCCC
Confidence 9999899999999999999999999999999999999986 788999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe----
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---- 431 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---- 431 (765)
+++..+.++..+||||++||++|||.++|.|++|+|+.+..|. ++| ||+|+++.+|+.|+++||||+||+|+||
T Consensus 319 ~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~-~~~-vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~ 396 (472)
T PRK07178 319 PLSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPG-GPG-VRTDTAIYTGYTIPPYYDSMCAKLIVWALTWE 396 (472)
T ss_pred CCCCccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCC-CCC-eEEEecccCCCEeCcccCCccceEEEEcCCHH
Confidence 9998787888899999999999999999999999999999998 789 9999999999999999999999999999
Q ss_pred -----------e-EEeccccCHHHHHHHhcCcCcccCccccccccccccccccC
Q 041518 432 -----------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVK 473 (765)
Q Consensus 432 -----------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 473 (765)
+ .|.|++||++||++||.||+|++|+++|+||+++ .+++..
T Consensus 397 ~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~ 449 (472)
T PRK07178 397 EALDRGRRALDDMRVQGVKTTIPYYQEILRNPEFRSGQFNTSFVESH-PELTNY 449 (472)
T ss_pred HHHHHHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCCCccchhHhcC-hhhhcC
Confidence 6 9999999999999999999999999999999998 666433
No 11
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=1.6e-81 Score=715.61 Aligned_cols=434 Identities=49% Similarity=0.823 Sum_probs=413.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|+|||||+|+|++|++++++|+++|+++|++++++|..+++.++||+++.+++.+. ++|+|.+.|+++|+++++|+|||
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~-~~y~d~~~i~~~a~~~~iDaI~p 79 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPI-KGYLDVKRIVEIAKACGADAIHP 79 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCch-hcccCHHHHHHHHHHhCCCEEEE
Confidence 68999999999999999999999999999999999999999999999999987553 78999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccC-CCCHHHHHHHHHHhCCcEEEee
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGN-EQDIDLMKSEAAKIGYPILIKP 194 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~-~~s~~e~~~~~~~ig~PvVVKP 194 (765)
||||++|+..+++.+++.|++++||++++++.++||..+|++++++|||+||++... ..+.+++.++++.+|||+||||
T Consensus 80 g~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP 159 (478)
T PRK08463 80 GYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA 159 (478)
T ss_pred CCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999976542 2478899999999999999999
Q ss_pred cCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeee
Q 041518 195 THGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKII 274 (765)
Q Consensus 195 ~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~ 274 (765)
+.|+||+||+++++.+||..+++.+..++...|+++.+++|+||++++|+++++++|++|+++++++|+|+.+++||+.+
T Consensus 160 ~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~i 239 (478)
T PRK08463 160 SGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI 239 (478)
T ss_pred CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCceE
Confidence 99999999999999999999999988888877888999999999989999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcC
Q 041518 275 EEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANG 354 (765)
Q Consensus 275 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G 354 (765)
+.+|++.++++++++|.+.+.++++++||.|++|+||++++ +|++||+|||||+|++|++++.++|+|++++++++++|
T Consensus 240 e~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~~~y~iEiN~R~~~~~~~te~~tGidlv~~~ir~a~G 318 (478)
T PRK08463 240 EIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAG 318 (478)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEEEEECCcCCCcceeeHhhCCCHHHHHHHHHcC
Confidence 99999889999999999999999999999999999999997 78899999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe---
Q 041518 355 EPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA--- 431 (765)
Q Consensus 355 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g--- 431 (765)
+++++.+.++..+|||+++||+||||..+|.|++|+|+.+..|. +++ +|+|+++.+|+.|+++||||+||+|+||
T Consensus 319 ~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~-~~~-vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r 396 (478)
T PRK08463 319 EILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPAL-GPS-VRVDSHIYKDYTIPPYYDSMLAKLIVKATSY 396 (478)
T ss_pred CCCCCccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCC-CCC-eeEeccccCCCEeCcccccceeEEEEECCCH
Confidence 99988777778899999999999999999999999999999887 688 9999999999999999999999999999
Q ss_pred ------------e-EEeccccCHHHHHHHhcCcCcccCccccccccccccccccC
Q 041518 432 ------------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELFVK 473 (765)
Q Consensus 432 ------------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 473 (765)
+ .|.|++||++||+++|.||+|++|+++|+||++++++++..
T Consensus 397 ~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~ 451 (478)
T PRK08463 397 DLAVNKLERALKEFVIDGIRTTIPFLIAITKTREFRRGYFDTSYIETHMQELLEK 451 (478)
T ss_pred HHHHHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhccc
Confidence 6 99999999999999999999999999999999999988754
No 12
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=1.7e-81 Score=713.97 Aligned_cols=434 Identities=46% Similarity=0.750 Sum_probs=412.1
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 35 ~~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
+|||||||+|+|+++++++++|+++|+++++++++.|.++++.++||+.+.++|....++|+|.+.|+++|+++++|+||
T Consensus 3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~ 82 (467)
T PRK12833 3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIH 82 (467)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999999999999999999999999999999988877778999999999999999999999
Q ss_pred eCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEee
Q 041518 115 PGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKP 194 (765)
Q Consensus 115 pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP 194 (765)
|||||++|++.+++.+++.|++|+||+++++++++||..+|++++++|||+||++.....+.+++.++++++|||+||||
T Consensus 83 pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp 162 (467)
T PRK12833 83 PGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKA 162 (467)
T ss_pred ECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999873344589999999999999999999
Q ss_pred cCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeee
Q 041518 195 THGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKII 274 (765)
Q Consensus 195 ~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~ 274 (765)
..|+||+||+++++.+||.++++.+.+++...|+++.+|||+||++++|+++++++|++ +++++++++|++++++++++
T Consensus 163 ~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~ 241 (467)
T PRK12833 163 AAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKIL 241 (467)
T ss_pred CCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccEE
Confidence 99999999999999999999999998888878888899999999988999999999876 68899999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcC
Q 041518 275 EEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANG 354 (765)
Q Consensus 275 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G 354 (765)
+++|++.++++.+++|.+.+.++++++||+|++|+||++++++|++||||||||+|++|++++.++|+|++++++++++|
T Consensus 242 e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G 321 (467)
T PRK12833 242 EEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADG 321 (467)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcchhhhHHHhCCCHHHHHHHHHCC
Confidence 99998889999999999999999999999999999999985468899999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe---
Q 041518 355 EPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA--- 431 (765)
Q Consensus 355 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g--- 431 (765)
+++++.+.++..+||++++|+++|||.++|.|++|+|+.+.+|. ++| ||+|+++.+|+.|+++|||+|||||+||
T Consensus 322 ~~l~~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~-~~g-vr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~ 399 (467)
T PRK12833 322 EPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQ-GPG-VRVDSLLYPGYRVPPFYDSLLAKLIVHGEDR 399 (467)
T ss_pred CCCCCCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCC-CCC-eEEecceeCcCEeCCCcCcchheEEEEcCCH
Confidence 99998777888999999999999999999999999999999998 799 9999999999999999999999999999
Q ss_pred ------------e-EEeccccCHHHHHHHhcCcCcccCccccccccccccccc
Q 041518 432 ------------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKDELF 471 (765)
Q Consensus 432 ------------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~ 471 (765)
+ .|.|++||++||++||+||+|++|+++|+||++++++++
T Consensus 400 ~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 452 (467)
T PRK12833 400 AAALARAARALRELRIDGMKTTAPLHRALLADADVRAGRFHTNFLEAWLAEWR 452 (467)
T ss_pred HHHHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhhh
Confidence 6 999999999999999999999999999999999876653
No 13
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=1.2e-76 Score=672.37 Aligned_cols=429 Identities=49% Similarity=0.826 Sum_probs=408.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|||||||+|+|+++++++++||++|+++++++++.|.++++..+||+.+.+++....++|+|.+.|+++|++.++|+|+|
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p 80 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP 80 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence 58999999999999999999999999999999988998999999999999888777778999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
+|++++|+..++.++++.|++++||+++++.+++||..+|++++++|||+||++.....+.+++.++++.+|||+||||+
T Consensus 81 ~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~ 160 (447)
T PRK05586 81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160 (447)
T ss_pred CccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998644445889999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+|++++++.+||.++++.+.+++...|+++.+++|+||+|++|+++++++|.+|+++++++++|+.++++++..+
T Consensus 161 ~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~ 240 (447)
T PRK05586 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240 (447)
T ss_pred CCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceEE
Confidence 99999999999999999999999888877778778999999999889999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
.+|++.++++++++|.+++.+++++|||.|++++||++++ +|++||+|||||+++++++++.++|+|++++++++++|+
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g~~~~iEvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~ 319 (447)
T PRK05586 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGE 319 (447)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CCCEEEEEEECCCCCCccceehhhCCCHHHHHHHHHcCC
Confidence 9998889999999999999999999999999999999997 788999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe----
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---- 431 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---- 431 (765)
++++.+.++...||++++||++|+|...|.|.+|+++.+.+|. +++ ||+++++.+|+.|+++|||++|++|++|
T Consensus 320 ~l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~-~~~-vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~ 397 (447)
T PRK05586 320 KLSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPG-GLG-VRVDSAVYSGYTIPPYYDSMIGKLIVYGKDRE 397 (447)
T ss_pred CCCCcccccCcCceEEEEEeeccCcccCccCCCCEEEEEEcCC-CCC-eEeeccccCCCccCCccCchhheeEEEcCCHH
Confidence 9988777788899999999999999999999999999999998 688 9999999999999999999999999999
Q ss_pred -----------e-EEeccccCHHHHHHHhcCcCcccCccccccccccc
Q 041518 432 -----------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHK 467 (765)
Q Consensus 432 -----------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~ 467 (765)
+ .|.|++||++||+.||.||+|.+|+++|+||++++
T Consensus 398 ~a~~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 445 (447)
T PRK05586 398 EAIQKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKGTYDTSFIEKKL 445 (447)
T ss_pred HHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCccccHHhHhhc
Confidence 6 99999999999999999999999999999999875
No 14
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=1.2e-75 Score=664.79 Aligned_cols=430 Identities=52% Similarity=0.839 Sum_probs=406.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|||||||+|+|+++++++++||++|++|+++++++|.++++.++||+++.+++....++|+|.+.|+++|+++++|+|+|
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 68999999999999999999999999999999988888899999999999877677779999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
++|+++|+..++..+++.|++++||+++++++++||..+|++|+++|||+||++.....+.+++.++++++|||+||||.
T Consensus 81 g~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~ 160 (449)
T TIGR00514 81 GYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT 160 (449)
T ss_pred CCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998643445889999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+|++++++.+||.++++.+..++...++.+.+|||+||+|++|++++++.|++|+++.+++++|++++++++.++
T Consensus 161 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (449)
T TIGR00514 161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240 (449)
T ss_pred CCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEE
Confidence 99999999999999999999998877766667778999999999889999999999989999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
..|++.++++..++|.+.+.++++++||.|++|+||++++ +|++||||||||+++++++++.++|+|++++++++++|+
T Consensus 241 ~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g~~~viEiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~ 319 (449)
T TIGR00514 241 EAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGE 319 (449)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CCCEEEEEEECCCCCCcceeehhcCCcHHHHHHHHHCCC
Confidence 9998889999999999999999999999999999999997 788999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe----
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---- 431 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---- 431 (765)
+++..+..++.+|+|+++||++|||.++|.|.+|.+..+..|. ++| ||+++++.+|+.|+++|||++|++|++|
T Consensus 320 ~l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~-~~g-v~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ 397 (449)
T TIGR00514 320 PLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPG-GPG-VRWDSHVYSGYTVPPYYDSMIGKLITYGKTRE 397 (449)
T ss_pred CCCCccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCC-CCC-EeeccCccCCCEeCccccccceEEEEEcCCHH
Confidence 9987676777789999999999999999999999999999998 799 9999999999999999999999999999
Q ss_pred -----------e-EEeccccCHHHHHHHhcCcCcccCcccccccccccc
Q 041518 432 -----------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKD 468 (765)
Q Consensus 432 -----------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~ 468 (765)
+ .|.|++||++||++++.|++|.+|+++|+||++++.
T Consensus 398 ea~~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 398 VAIARMKRALSEFIIDGIKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred HHHHHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 6 999999999999999999999999999999998764
No 15
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=9.4e-74 Score=649.02 Aligned_cols=427 Identities=45% Similarity=0.763 Sum_probs=401.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
.||||||+|+|+++++++++||++|++|+++++++|.++++.++||+.+.+++....++|+|.+.|+++|+++++|+|+|
T Consensus 3 ~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 3 EIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 38999999999999999999999999999999999999999999999999988777789999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
++|+++|+..+++.++++|++++||+++++++++||..+|++|+++|||+||++.....+.+++.++++++|||+||||+
T Consensus 83 g~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~ 162 (445)
T PRK08462 83 GYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA 162 (445)
T ss_pred CCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998644456889999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
+|+||+|+++++|.+||.++++.+..++...++++.+++|+||+|++|++++++++.+|+++++++++|+.++++++.++
T Consensus 163 ~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~ 242 (445)
T PRK08462 163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIE 242 (445)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceEE
Confidence 99999999999999999999998877766667778899999999889999999999889999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
.+|++.++++.+++|.+.+.++++++||.|++++||++++ +|++||||||||+++++++++.++|+|++++++++++|+
T Consensus 243 ~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~-~g~~~viEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~ 321 (445)
T PRK08462 243 ESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDS-NLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGE 321 (445)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeC-CCCEEEEEEECCcCcCcceehhhhCCCHHHHHHHHHCCC
Confidence 9998789999999999999999999999999999999997 678999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe----
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---- 431 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---- 431 (765)
+++. +..+...|+|+++|+++++|. .|.|.+|.+..+..|. ..+ +|++.++..|+.++++||+++|++|++|
T Consensus 322 ~l~~-~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~l~~~~~~~-~~~-~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ 397 (445)
T PRK08462 322 ELPS-QESIKLKGHAIECRITAEDPK-KFYPSPGKITKWIAPG-GRN-VRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRN 397 (445)
T ss_pred Cccc-ccccCCceeEEEEEeccCCCC-ceecccCEEeEEEcCC-CCC-EEEccCcCCCCEeChhhccCccEEEEEcCCHH
Confidence 9873 345567899999999999985 5999999999999988 567 9999999999999999999999999999
Q ss_pred -----------e-EEeccccCHHHHHHHhcCcCcccCccccccccccc
Q 041518 432 -----------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHK 467 (765)
Q Consensus 432 -----------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~ 467 (765)
+ .|.|++||++||+++|.||+|++|+++|+||++|+
T Consensus 398 ea~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 398 RAIAKMKRALKEFKVEGIKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred HHHHHHHHHHHhcEEECccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 5 99999999999999999999999999999999875
No 16
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=7.2e-73 Score=643.19 Aligned_cols=430 Identities=51% Similarity=0.859 Sum_probs=405.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|||||||+|+|+++++++++|+++|++++++++++|..+++.++||+.+.+++....++|+|.++|+++|+++++|+|+|
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 58999999999999999999999999999999988888899999999998877776789999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
++++++|+..++..++++|++++||+++++.+++||..+|++++++|||+||++.....+.+++.++++.+|||+||||.
T Consensus 81 ~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~ 160 (451)
T PRK08591 81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160 (451)
T ss_pred CCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998533345889999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+|+++++|.+||.++++.+..++...++++.+++|+||+|++|+++++++|++|+++++++++|+.++++++..+
T Consensus 161 ~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PRK08591 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240 (451)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEEE
Confidence 99999999999999999999999887776667778999999999889999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
..|++.++++.+++|.+.+.++++++||.|++++||++++ +|++||+|||||+++++++++.++|+|++++++++++|+
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g~~~viEINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~ 319 (451)
T PRK08591 241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGE 319 (451)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CCCEEEEEEECCCCccchhhhhhhCCCHHHHHHHHHCCC
Confidence 9998889999999999999999999999999999999997 788999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe----
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---- 431 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---- 431 (765)
+++..+.+...+|+++++|+++|+|...|.|.+|++..+..|. +++ ||++.++.+|+.|+++|||++|++|++|
T Consensus 320 ~l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~~~~-~~~-v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ 397 (451)
T PRK08591 320 PLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPG-GPG-VRVDSAVYTGYTIPPYYDSMIGKLIVHGETRE 397 (451)
T ss_pred CCCCcccccCcCceEEEEEEeeecCccCcccCCCEeeEEEcCC-CCC-eeecccccCCCCcCccccCcceEEEEEcCCHH
Confidence 9987666667789999999999999999999999999999987 788 9999999999999999999999999999
Q ss_pred -----------e-EEeccccCHHHHHHHhcCcCcccCcccccccccccc
Q 041518 432 -----------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKD 468 (765)
Q Consensus 432 -----------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~ 468 (765)
+ .|.|++||++||++||++|+|++|+++|+||+++++
T Consensus 398 ~~~~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 446 (451)
T PRK08591 398 EAIARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLA 446 (451)
T ss_pred HHHHHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCCCcccHHHHhhhh
Confidence 5 999999999999999999999999999999998854
No 17
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=2e-69 Score=664.52 Aligned_cols=425 Identities=48% Similarity=0.784 Sum_probs=401.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
+|||||+|+|+++++++++|+++|+++++++++++..++++++||+.+.+++....++|+|.++|+++|+++++|+||||
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG 80 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG 80 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence 58999999999999999999999999999999999999999999999999887778899999999999999999999999
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecC
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTH 196 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~ 196 (765)
++|++|+..++..|++.|++++||+++++++++||..+|++|+++|||++|++.. ..+.+++.++++++|||+||||..
T Consensus 81 ~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~l-v~s~dea~~~a~~igyPvVVKP~~ 159 (1201)
T TIGR02712 81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGL-LSSLDEALEAAKEIGYPVMLKSTA 159 (1201)
T ss_pred CcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceee-cCCHHHHHHHHHhcCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999886533 358899999999999999999999
Q ss_pred CCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeeee
Q 041518 197 GGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEE 276 (765)
Q Consensus 197 g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e~ 276 (765)
|+||+||++|+|.+|+.++++.+.+.+...|++..++||+||++++|+++++++|++|+++.+++++|+.++++++.+++
T Consensus 160 ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee 239 (1201)
T TIGR02712 160 GGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE 239 (1201)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEE
Confidence 99999999999999999999999887777788888999999998899999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCCC
Q 041518 277 APAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEP 356 (765)
Q Consensus 277 ~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~~ 356 (765)
+|++.++++.+++|.+.+.++++++||+|++++||++++++|++||||||||++++|++++.++|+|++++++++++|++
T Consensus 240 ~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~~~lte~~tGvDlve~~ir~a~G~~ 319 (1201)
T TIGR02712 240 TPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGEL 319 (1201)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcchhhHHHHhCCCHHHHHHHHHcCCC
Confidence 99988999999999999999999999999999999999645789999999999999999999999999999999999999
Q ss_pred CCCCCCCc--ccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe---
Q 041518 357 LPLSQSEV--PLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA--- 431 (765)
Q Consensus 357 l~~~~~~~--~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g--- 431 (765)
+++.+... ...|+++++|+|||+|.++|.|++|.++.+.+|. + +|++.++++|++|+++||+|+||+|++|
T Consensus 320 ~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p~---~-vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r 395 (1201)
T TIGR02712 320 PDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFPD---D-VRVDTWVETGTEVSPEYDPMLAKIIVHGSDR 395 (1201)
T ss_pred CCccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECCC---e-EEEeceecCCCEECCccCCCeEEEEEEECCH
Confidence 88654333 4679999999999999999999999999998886 3 9999999999999999999999999999
Q ss_pred ------------e-EEeccccCHHHHHHHhcCcCcccCcccccccccc
Q 041518 432 ------------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQH 466 (765)
Q Consensus 432 ------------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~ 466 (765)
+ .|.|++||++||++|+.+|+|++|+++|+||++.
T Consensus 396 ~eA~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 396 EDAILKLHQALAETRVYGIETNLDYLRSILSSETFRSAQVSTRTLNSF 443 (1201)
T ss_pred HHHHHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCCCccchhhhhC
Confidence 5 9999999999999999999999999999999864
No 18
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=5.3e-63 Score=562.35 Aligned_cols=429 Identities=49% Similarity=0.817 Sum_probs=393.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|+|||||+|+|+.+++++++++++|+++++++++++..+.+.++||+.+.+++....++|.|.+.++++|+++++|+|+|
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p 80 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP 80 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEe
Confidence 68999999999999999999999999999999888888889999999998877666678999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
++++++|+..++..++..|++++||+++++++++||..+|++|+++|||+||+......+.+++.++++.+|||+||||.
T Consensus 81 ~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~ 160 (450)
T PRK06111 81 GYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKAS 160 (450)
T ss_pred CCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 99999999889999999999999999999999999999999999999999997333335889999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+|++++++.+|+..+++.+..++...++++.+++|+||+|++|++++++.+++|+++.++.++|+.++.|++..+
T Consensus 161 ~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (450)
T PRK06111 161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240 (450)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceEE
Confidence 99999999999999999999998766555556678999999999889999999999889999998899998888888888
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
.+|++.+++++.+++.+.+.++++++||.|++++||++++ +|++||+|||||+++++++++.++|+|++++++++++|+
T Consensus 241 ~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g~~~viEiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~ 319 (450)
T PRK06111 241 EAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGE 319 (450)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEEEEECCcCCcchhhHHHhCcCHHHHHHHHhcCC
Confidence 8898889999999999999999999999999999999996 667999999999998889999999999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe----
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---- 431 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---- 431 (765)
+++..+.+....+.++..++|++++. .+.|.+|.++.++.|. .++ ++++..+..|++|++++|+++|++|++|
T Consensus 320 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~~~~i~~~~-~~~-~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ 396 (450)
T PRK06111 320 KLSFTQDDIKRSGHAIEVRIYAEDPK-TFFPSPGKITDLTLPG-GEG-VRHDHAVENGVTVTPFYDPMIAKLIAHGETRE 396 (450)
T ss_pred CCCCccccCCcCceEEEEEEecCCCC-CcccCCCeeCeEecCC-CCC-EEEEecccCCCEeChhhcccceEEEEEeCCHH
Confidence 98866555566789999999998875 4789999999888776 567 9999999999999999999999999999
Q ss_pred -----------e-EEeccccCHHHHHHHhcCcCcccCcccccccccccc
Q 041518 432 -----------K-TVAGVPTNINFLQKLAKHRAFESGDVETHFIEQHKD 468 (765)
Q Consensus 432 -----------~-~i~g~~tn~~~l~~~~~~~~~~~~~~~t~~~~~~~~ 468 (765)
. .+.|++||+++|+.+|++|+|.+|.++|+||++.+.
T Consensus 397 ea~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (450)
T PRK06111 397 EAISRLHDALEELKVEGIKTNIPLLLQVLEDPVFKAGGYTTGFLTKQLV 445 (450)
T ss_pred HHHHHHHHHHHhCEEeCccCCHHHHHHHhcChhhcCCcccchHHhhhhh
Confidence 4 999999999999999999999999999999987644
No 19
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=2.2e-42 Score=351.16 Aligned_cols=209 Identities=47% Similarity=0.739 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCC
Q 041518 150 DKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGI 229 (765)
Q Consensus 150 DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~ 229 (765)
||..+|++++++|+|+||+......+.+++.++++++|||++|||+.|+||+||++++|.+||.++++.+.+++..+|++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999999875579999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEE
Q 041518 230 NTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTV 309 (765)
Q Consensus 230 ~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~v 309 (765)
+++++|+|+++.+|++||+++|++|++++++++||+.++++|+.++++|++.++++.+++|.+.+.++++++||.|++||
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tv 160 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTV 160 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceE
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCCCCC
Q 041518 310 EFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLP 358 (765)
Q Consensus 310 Ef~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~~l~ 358 (765)
||+++++++++||||||||+|++||++|++||+||+++++++++|.+|+
T Consensus 161 ef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 161 EFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp EEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred EEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 9999976789999999999999999999999999999999999999986
No 20
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=4.7e-41 Score=412.35 Aligned_cols=323 Identities=17% Similarity=0.233 Sum_probs=269.3
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHH
Q 041518 36 RIEKILIANRGEI-----------AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDA 104 (765)
Q Consensus 36 ~~kkILI~g~G~~-----------a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~ 104 (765)
.+|||||+|+|.+ ++.++++||++|+++++++++++..+.+..++|+.|.. +++.+.++++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~--------pl~~e~vl~i 644 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNV 644 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEE--------eCCHHHHHHH
Confidence 4689999999964 46699999999999999999999999999999999975 4779999999
Q ss_pred HHHhCCCEEEeCCCc-------------ccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCcccc
Q 041518 105 AIRTGAQAIHPGYGF-------------LSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHG 171 (765)
Q Consensus 105 a~~~~~DaV~pg~g~-------------lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~ 171 (765)
|+++++|+|+|++|. ++|++.|++ +...|+.++||++++++++.||..+|++|+++|||+|++...
T Consensus 645 ~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v 723 (1102)
T PLN02735 645 IDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIA 723 (1102)
T ss_pred HHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEe
Confidence 999999999999873 222222222 334589999999999999999999999999999999999765
Q ss_pred CCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEe
Q 041518 172 NEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGD 251 (765)
Q Consensus 172 ~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d 251 (765)
. +.+++.++++++|||+||||+.|+||+||++|+|.+||..+++.+.+. +++++++||+||++++|+++++++|
T Consensus 724 ~--s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D 797 (1102)
T PLN02735 724 R--SEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDALAD 797 (1102)
T ss_pred C--CHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEEC
Confidence 4 889999999999999999999999999999999999999999988754 3356899999999889999999999
Q ss_pred ccccEEEEEeeecccc-ccc-eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccC
Q 041518 252 KYGKVLHLYERDCSVQ-RRH-QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRL 329 (765)
Q Consensus 252 ~~g~vv~l~~r~~s~~-~~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~ 329 (765)
++|+++...-.+.... ..| .......|++.++++.+++|.+++.+++++|||.|++++||++++ +|++||||+|||+
T Consensus 798 ~~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~-dg~~yviEiNpR~ 876 (1102)
T PLN02735 798 SEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITP-SGEVYIIEANPRA 876 (1102)
T ss_pred CCCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcC-CCcEEEEEEeCCC
Confidence 8888775432221100 011 111233577689999999999999999999999999999999986 7889999999999
Q ss_pred CccccccceecCCCHHHHHHHHHcCCCCC---CCCCCcccceEEEEEEe
Q 041518 330 QVEHPVTEMIVDQDLVEWQIRVANGEPLP---LSQSEVPLLGHAFEARI 375 (765)
Q Consensus 330 ~~~~~~~e~~tGvDl~~~~i~~a~G~~l~---~~~~~~~~~g~ai~~ri 375 (765)
++++|+++.++|+|++++++++++|++|. +.+++. ....++.+++
T Consensus 877 s~t~p~~~katGidl~~~~~~~~~G~~l~~~~~~~~~~-~~~~~vk~~v 924 (1102)
T PLN02735 877 SRTVPFVSKAIGHPLAKYASLVMSGKSLKDLGFTEEVI-PAHVSVKEAV 924 (1102)
T ss_pred CccHHHHHHHHCCCHHHHHHHHHcCCChhhcCCCcccc-cCeEEEEecc
Confidence 99999999999999999999999999864 222222 2334566555
No 21
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=1.1e-39 Score=401.89 Aligned_cols=362 Identities=19% Similarity=0.285 Sum_probs=291.3
Q ss_pred CCCCEEEEEcCcHH-----------HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHH
Q 041518 35 QRIEKILIANRGEI-----------AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVD 103 (765)
Q Consensus 35 ~~~kkILI~g~G~~-----------a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~ 103 (765)
..+|||||+|+|.+ +..++++|+++|+++++++++++....+..+||+.|.. | .+.+.+.+
T Consensus 4 ~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~-p-------~~~~~v~~ 75 (1050)
T TIGR01369 4 TDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIE-P-------LTPEAVEK 75 (1050)
T ss_pred CCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEEC-C-------CCHHHHHH
Confidence 35899999999974 46799999999999999999988877888899998864 3 46789999
Q ss_pred HHHHhCCCEEEeCCCc-----ccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHH
Q 041518 104 AAIRTGAQAIHPGYGF-----LSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDL 178 (765)
Q Consensus 104 ~a~~~~~DaV~pg~g~-----lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e 178 (765)
+++++++|+|+|++|+ +++....+..+++.|++++|++++++..+.||..+|++|+++|+|+|++..+. +.++
T Consensus 76 ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~--s~~e 153 (1050)
T TIGR01369 76 IIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAH--SVEE 153 (1050)
T ss_pred HHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecC--CHHH
Confidence 9999999999999764 22223346688999999999999999999999999999999999999997655 8999
Q ss_pred HHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEE
Q 041518 179 MKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLH 258 (765)
Q Consensus 179 ~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~ 258 (765)
+.++++++|||+||||+.|.||+|+.+++|.+||.+++......+. .+.+|||+||+|.+|+++++++|.+|+++.
T Consensus 154 ~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~----~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~ 229 (1050)
T TIGR01369 154 ALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASP----INQVLVEKSLAGWKEIEYEVMRDSNDNCIT 229 (1050)
T ss_pred HHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCC----CCcEEEEEcccCceEEEEEEEEeCCCCEEE
Confidence 9999999999999999999999999999999999999887764321 268999999998799999999998888877
Q ss_pred EEeeec--cccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCcccccc
Q 041518 259 LYERDC--SVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVT 336 (765)
Q Consensus 259 l~~r~~--s~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~ 336 (765)
+...+. +..-.....+..+|+..++++..++|.+++.+++++|||.|.++|||++++++|++|++|||||+++++.++
T Consensus 230 ~~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~s~~l~ 309 (1050)
T TIGR01369 230 VCNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSRSSALA 309 (1050)
T ss_pred EeeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCcchhhh
Confidence 632111 011122345666888668999999999999999999999999999999997457899999999999888899
Q ss_pred ceecCCCHHHHHHHHHcCCCCCCCCCCcccceEEEEEEecccCCCCCCCCCCcceeE--EeeCCCCCCcEEEEecccCCC
Q 041518 337 EMIVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHH--YHPVPVSSKAVRVETGVEQGD 414 (765)
Q Consensus 337 e~~tGvDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~--~~~p~~~~~~vrv~~~v~~G~ 414 (765)
+.+||+|+.+..+++++|.++...+.++. | +++ ..|.|+.+.+.. -.+|- ... .+.+.....+.
T Consensus 310 s~atG~pl~~~~~~~alG~~l~~~~n~i~--g---------~~~-~~~~p~~~~~~~k~p~~~~-~~~-~~~~~~~~~~~ 375 (1050)
T TIGR01369 310 SKATGYPIAKVAAKLAVGYGLDELKNPVT--G---------TTP-ASFEPSLDYVVVKIPRWDF-DKF-AGVDRKLGTQM 375 (1050)
T ss_pred hHHhCCCHHHHHHHHHcCCCchhhcCCCc--C---------cCc-cccCcCCCeEEEEEEeCCC-CCC-CcccCCcCccc
Confidence 99999999999999999999875444332 2 333 247788777432 23332 122 22222222221
Q ss_pred eeCCccCCcceEEEEEe
Q 041518 415 TVSMHYDPMIANLWYGA 431 (765)
Q Consensus 415 ~v~~~~d~~~~~~i~~g 431 (765)
. ++|+++++|
T Consensus 376 k-------~~G~v~~~g 385 (1050)
T TIGR01369 376 K-------SVGEVMAIG 385 (1050)
T ss_pred c-------eeeEEEEEC
Confidence 1 599999999
No 22
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=3.4e-39 Score=359.25 Aligned_cols=356 Identities=21% Similarity=0.241 Sum_probs=275.6
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCC
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYG 118 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g 118 (765)
||||+|+|..++.++++|+++|+++++++.+++. +..++||+.+.++ |.|.+.++++++++++|+|+|..+
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~--~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~v~~~~e 71 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA--PAMQVAHRSYVIN-------MLDGDALRAVIEREKPDYIVPEIE 71 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC--chhhhCceEEEcC-------CCCHHHHHHHHHHhCCCEEEeccC
Confidence 6999999999999999999999999998776544 6778999988653 578899999999999999999876
Q ss_pred cccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHH-HHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCC
Q 041518 119 FLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIM-GAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHG 197 (765)
Q Consensus 119 ~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l-~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g 197 (765)
.+. ......+++.|++ +.|++++++++.||..+|+++ +++|||+|++.... +.+++.++++++|||+|+||.+|
T Consensus 72 ~v~--~~~~~~l~~~g~~-~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~--~~~~~~~~~~~~g~P~VvKP~~g 146 (380)
T TIGR01142 72 AIA--TDALFELEKEGYF-VVPNARATKLTMNREGIRRLAAEELGLPTSRYMFAD--SLDELREAVEKIGYPCVVKPVMS 146 (380)
T ss_pred ccC--HHHHHHHHhcCCe-eCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeC--CHHHHHHHHHHcCCCEEEEECCC
Confidence 543 2334567888976 458999999999999999986 89999999987655 88899888899999999999999
Q ss_pred CCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeeeec
Q 041518 198 GGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEA 277 (765)
Q Consensus 198 ~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e~~ 277 (765)
+||+|++++++.+||..+++.+...+. ..++.+|+|+||+++.|+++.++.+.+|++...... ...+..........
T Consensus 147 ~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 223 (380)
T TIGR01142 147 SSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFCAPI-GHRQIDGDYHESWQ 223 (380)
T ss_pred cCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCc-ceEEeCCeeEEEEC
Confidence 999999999999999999988754321 124689999999987899999887666664432110 01111122222346
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCCCC
Q 041518 278 PAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPL 357 (765)
Q Consensus 278 Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~~l 357 (765)
|+ .++++..+++.+++.+++++||+.|++|+||++++ +++||+|||||++++...+....|+|+++++++.++|.|+
T Consensus 224 p~-~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~--~~~~viEinpR~~~~~~~~~~~~g~~~~~~~~r~~~G~~~ 300 (380)
T TIGR01142 224 PQ-EMSEKALEEAQRIAKRITDALGGYGLFGVELFVKG--DEVIFSEVSPRPHDTGMVTLISQGLSEFALHVRAILGLPI 300 (380)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEC--CcEEEEEeecCCCCCceEEeeecCCCHHHHHHHHHcCCCC
Confidence 87 69999999999999999999999999999999994 5799999999998654444444599999999999999988
Q ss_pred CCCCCCcccceEEEEEEecccCCCCCCCCCCcceeEEee---CCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe
Q 041518 358 PLSQSEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHP---VPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA 431 (765)
Q Consensus 358 ~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~---p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g 431 (765)
+.. +..+.+....++++. .|++..+.. -...++ +++..+.++|+. ....+|++++.|
T Consensus 301 ~~~----~~~~~~~~~~i~~~~--------~g~~~~~~~~~~~~~~~~-~~~~~~~k~~~~----~~~~~G~v~~~~ 360 (380)
T TIGR01142 301 PGI----PQLGPAASAVIKAKV--------TGYSPAFRGLEKALSVPN-TQVRLFGKPEAY----VGRRLGVALATA 360 (380)
T ss_pred CCc----cccCCceEEEEEccc--------ccccchhhHHHHHHcCCC-CEEEECCCCcCC----CCCcCEEEEEec
Confidence 732 123344445555442 333332211 111356 788888888854 234789999987
No 23
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=1.7e-38 Score=367.23 Aligned_cols=360 Identities=17% Similarity=0.179 Sum_probs=284.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 35 ~~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
.+.|||+|+|+|..+..++++++++|+++++++.++ +++..+++|+.+.. +|.|.+.+.+++++ +|+|.
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~--~apa~~~AD~~~v~-------~~~D~~~l~~~a~~--~dvIt 88 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLE--DCPASSVAARHVVG-------SFDDRAAVREFAKR--CDVLT 88 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC--CCchhhhCceeeeC-------CCCCHHHHHHHHHH--CCEEE
Confidence 457899999999999999999999999999886544 45788889987742 47899999999987 68776
Q ss_pred eCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEee
Q 041518 115 PGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKP 194 (765)
Q Consensus 115 pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP 194 (765)
...... +....+.+++.|++ ++|+++++.+++||..+|++++++|||+|+++... +.+++.++++++|||+||||
T Consensus 89 ~e~e~v--~~~~l~~le~~gi~-v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~--~~~el~~~~~~ig~P~VvKP 163 (577)
T PLN02948 89 VEIEHV--DVDTLEALEKQGVD-VQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEID--DLESAEKAGDLFGYPLMLKS 163 (577)
T ss_pred EecCCC--CHHHHHHHHhcCCc-cCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeC--CHHHHHHHHHhcCCcEEEEe
Confidence 543222 13455888999987 46999999999999999999999999999998655 88899888999999999999
Q ss_pred cCCC-CCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceee
Q 041518 195 THGG-GGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKI 273 (765)
Q Consensus 195 ~~g~-Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~ 273 (765)
..++ +|+|++++++.+|+.++++.+.. + +..+|+|+||++.+|++|.++.+.+|++..+. ..+..++.+...
T Consensus 164 ~~ggs~g~Gv~~v~~~~eL~~a~~~~~~-----~-~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p-~~E~~~~~~~~~ 236 (577)
T PLN02948 164 RRLAYDGRGNAVAKTEEDLSSAVAALGG-----F-ERGLYAEKWAPFVKELAVMVARSRDGSTRCYP-VVETIHKDNICH 236 (577)
T ss_pred CCCCCCCCCeEEECCHHHHHHHHHHhhC-----C-CCcEEEEecCCCCeEEEEEEEECCCCCEEEec-CcccEEECCeeE
Confidence 9887 79999999999999999887642 1 46899999999879999999988778766542 122333334334
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHc
Q 041518 274 IEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVAN 353 (765)
Q Consensus 274 ~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~ 353 (765)
....|+ .++++.++++.+++.+++++||+.|++++||++++ +|.+||+|||||+++...++...+++|+++.++|.++
T Consensus 237 ~~~~Pa-~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG~v~v~EInpRpg~sGh~t~ea~~~s~fe~~vRa~l 314 (577)
T PLN02948 237 VVEAPA-NVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLK-DGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRAVL 314 (577)
T ss_pred EEEECC-CCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CCcEEEEEEeCCCCCCCceeeecccCCHHHHHHHHHc
Confidence 455798 79999999999999999999999999999999997 7889999999999964556667889999999999999
Q ss_pred CCCCCCCCCCcccceEEEEEEecccCCC-CCCCCCC-cceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe
Q 041518 354 GEPLPLSQSEVPLLGHAFEARIYAENVP-KGFLPAT-GVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA 431 (765)
Q Consensus 354 G~~l~~~~~~~~~~g~ai~~ri~ae~p~-~~f~p~~-G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g 431 (765)
|.|++... ....+++...++.++.. .++.+.. +....... |+ +++.++.++|.+.. ..+|++++.|
T Consensus 315 Glpl~~~~---~~~~~A~m~nl~g~~~~~~g~~~~~~~~~~~~~~----p~-~~v~~ygk~~~r~~----rkmGhV~~~g 382 (577)
T PLN02948 315 GLPLGDTS---MKVPAAIMYNILGEDEGEAGFRLAHQLMGRALNI----PG-ASVHWYGKPEMRKQ----RKMGHITVVG 382 (577)
T ss_pred CCCCCCcc---ccCCcEEEEEEeccccccccccchhhHHHHHhhC----CC-CEEEEecCCCCCCC----CeeEEEEEec
Confidence 99987422 22345777888876532 2233331 22222222 34 67777767674422 4799999998
No 24
>PRK07206 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-39 Score=360.80 Aligned_cols=386 Identities=16% Similarity=0.161 Sum_probs=282.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCC---cccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDS---LHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~---~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
|||+|||++++..+..++++++++|+++++++++.+... .....+|....+ .+.+.++++++++++++|+
T Consensus 1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~l~~~~~~~~~d~ 73 (416)
T PRK07206 1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVI-------INGDIDDLVEFLRKLGPEA 73 (416)
T ss_pred CCCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhh-------cCCCHHHHHHHHHHcCCCE
Confidence 789999999999999999999999999999998765432 122233322222 2367899999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCC---c
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGY---P 189 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~---P 189 (765)
|+|+.+... ...+.+.+..|++ .|++++++..++||..||++|+++|||+|+++... +.+++.++++.+|| |
T Consensus 74 vi~~~e~~~--~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~--~~~e~~~~~~~~g~~~~P 148 (416)
T PRK07206 74 IIAGAESGV--ELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQINTA--DWEEAEAWLRENGLIDRP 148 (416)
T ss_pred EEECCCccH--HHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecC--CHHHHHHHHHhcCCCCCC
Confidence 999864322 3334555667776 37899999999999999999999999999987655 88999999999988 9
Q ss_pred EEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCC--CCcEEEecccCCCeeEEEEEEEeccccEEEE--Eeeecc
Q 041518 190 ILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFG--INTILLEKYITQPRHIEVQIFGDKYGKVLHL--YERDCS 265 (765)
Q Consensus 190 vVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg--~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l--~~r~~s 265 (765)
+||||..|+||+||++|+|.+|+..+++++.... ..++ ...++|||||+ |.|++++++.. +|+++.. ..+...
T Consensus 149 ~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~-~~~~~~~~~~lvEe~i~-G~E~sv~~~~~-~G~~~~~~~~~~~~~ 225 (416)
T PRK07206 149 VVIKPLESAGSDGVFICPAKGDWKHAFNAILGKA-NKLGLVNETVLVQEYLI-GTEYVVNFVSL-DGNHLVTEIVRYHKT 225 (416)
T ss_pred EEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhcc-ccCCCCCCeEEEEEccc-cEEEEEEEEEE-CCEEEEEEeEEeeec
Confidence 9999999999999999999999999998876421 1111 36899999999 58999999864 3454432 222111
Q ss_pred ccccceeeeeecC-CCCCCHHHHHHHHHHHHHHHHHcCCC-ceeEEEEEEECCCCcEEEEEecccCCccc--cccceecC
Q 041518 266 VQRRHQKIIEEAP-APNVTHDFRALLGQAAVSAAKAVSYH-NAGTVEFIVDTVSDQFYFMEMNTRLQVEH--PVTEMIVD 341 (765)
Q Consensus 266 ~~~~~~k~~e~~P-a~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~~~~~g~~~~iEiN~R~~~~~--~~~e~~tG 341 (765)
............. . ..+.+..+++.+.+.++++++|+. |++|+||++++ + ++++||||||++++. .+++.++|
T Consensus 226 ~~~~~~~~~~~~~~~-p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~-~-g~~liEin~R~~G~~~~~~~~~~~G 302 (416)
T PRK07206 226 SLNSGSTVYDYDEFL-DYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTA-D-GPRLIEIGARLDGGLHPDVARLATG 302 (416)
T ss_pred ccCCCCceecccccC-CccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC-C-CCEEEEECCccCCCCccchhhhhcC
Confidence 1111111111111 1 135678899999999999999996 99999999995 4 599999999999544 45788999
Q ss_pred CCHHHHHHHHHcCCCCCCCC--CCcccceEEEEEEecccCCCCCCCCCCcceeEEeeCCC---CCCcEEEEecccCCCee
Q 041518 342 QDLVEWQIRVANGEPLPLSQ--SEVPLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPV---SSKAVRVETGVEQGDTV 416 (765)
Q Consensus 342 vDl~~~~i~~a~G~~l~~~~--~~~~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~---~~~~vrv~~~v~~G~~v 416 (765)
+|+.+++++.++|.+..... ......+++....+. .|..|++..+..... .|+...+...+++|+.|
T Consensus 303 ~d~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v 374 (416)
T PRK07206 303 DSQLDATVESLADPDVFRETLREGYRLKAHVFNVFLI--------SPAAGVFSNVEFLEEIQKLPSFKKSHIYVKEGDYV 374 (416)
T ss_pred cCHHHHHHHHHhCchhhccccCCCcChhhceEEEEEe--------cCCCceEeCCccHHHHHhCCchhheEEecCCCCCc
Confidence 99999999999998753221 112223343222222 345788888764331 35546788889999999
Q ss_pred CCccCC--cceEEEEEeeEEeccccCHHHHHHH
Q 041518 417 SMHYDP--MIANLWYGAKTVAGVPTNINFLQKL 447 (765)
Q Consensus 417 ~~~~d~--~~~~~i~~g~~i~g~~tn~~~l~~~ 447 (765)
++..|+ .+|.+|+.|+...-+..+...++.+
T Consensus 375 ~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 407 (416)
T PRK07206 375 PQTVDLFSQPGTVYLVHKDKEQLWQDYEKIRKM 407 (416)
T ss_pred cCceecCCCCEEEEEEcCCHHHHHHHHHHHHHH
Confidence 998887 7999999984333333444555544
No 25
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=6.9e-39 Score=393.24 Aligned_cols=325 Identities=19% Similarity=0.296 Sum_probs=271.8
Q ss_pred CCCCCCCCcCCCCEEEEEcCcHH-----------HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcC
Q 041518 26 SGCKSDDKQQRIEKILIANRGEI-----------AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLS 94 (765)
Q Consensus 26 ~~~~~~~~~~~~kkILI~g~G~~-----------a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~s 94 (765)
|+...+|+...+|||||+|+|++ +..++++|+++|++|++++++++.......+||+.| +.|
T Consensus 12 ~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~y-i~p------ 84 (1102)
T PLN02735 12 SAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTY-IAP------ 84 (1102)
T ss_pred cccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEE-eCC------
Confidence 44456677778999999999986 457999999999999999988876555667899977 444
Q ss_pred CCCHHHHHHHHHHhCCCEEEeCCCc-ccccHH--H--HHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCcc
Q 041518 95 YLNGSSIVDAAIRTGAQAIHPGYGF-LSESAD--F--AQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGY 169 (765)
Q Consensus 95 yld~~~Il~~a~~~~~DaV~pg~g~-lsE~~~--~--a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~ 169 (765)
.+.+.+.++++++++|+|+|++|. ..++.. + ...++.+|++++|++++++.++.||..+|++|+++|+|+|++.
T Consensus 85 -~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~ 163 (1102)
T PLN02735 85 -MTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSG 163 (1102)
T ss_pred -CCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCee
Confidence 567889999999999999998753 222211 1 2467899999999999999999999999999999999999987
Q ss_pred ccCCCCHHHHHHHHHHhC-CcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEE
Q 041518 170 HGNEQDIDLMKSEAAKIG-YPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQI 248 (765)
Q Consensus 170 ~~~~~s~~e~~~~~~~ig-~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v 248 (765)
... +.+++.++++++| ||+||||+.+.||+|+.+|+|.+||..+++.+...+ .++.+|||+||.|.+|+++++
T Consensus 164 ~v~--s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s----~~~~VLVEe~I~G~kE~ev~V 237 (1102)
T PLN02735 164 IAT--TLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAAS----ITSQVLVEKSLLGWKEYELEV 237 (1102)
T ss_pred EeC--CHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEecCCCeEEEEEE
Confidence 655 8889988999999 999999999999999999999999999998765321 257899999999779999999
Q ss_pred EEeccccEEEEEeeec-c-ccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCC-ceeEEEEEEECCCCcEEEEEe
Q 041518 249 FGDKYGKVLHLYERDC-S-VQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYH-NAGTVEFIVDTVSDQFYFMEM 325 (765)
Q Consensus 249 ~~d~~g~vv~l~~r~~-s-~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~~~~~g~~~~iEi 325 (765)
++|..|+++.+...+. . ..-........+|+..++++..++|.+++.+++++||++ |.+|+||++++++|++|||||
T Consensus 238 l~D~~g~~i~v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEV 317 (1102)
T PLN02735 238 MRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEM 317 (1102)
T ss_pred EEcCCCCEEEEeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEe
Confidence 9997778766532221 1 111113456667987799999999999999999999995 999999999964788999999
Q ss_pred cccCCccccccceecCCCHHHHHHHHHcCCCCCCCCCCc
Q 041518 326 NTRLQVEHPVTEMIVDQDLVEWQIRVANGEPLPLSQSEV 364 (765)
Q Consensus 326 N~R~~~~~~~~e~~tGvDl~~~~i~~a~G~~l~~~~~~~ 364 (765)
|||+++.+++++.+||+|+++.++++|+|.+|+..+.++
T Consensus 318 NPR~s~ss~l~s~atG~~~a~~~~klalG~~l~~~~~~~ 356 (1102)
T PLN02735 318 NPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDI 356 (1102)
T ss_pred cCCCCCcchhhhhhhCCCHHHHHHHHHCCCChhhhcccc
Confidence 999999999999999999999999999999987544443
No 26
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=2.7e-37 Score=342.48 Aligned_cols=310 Identities=21% Similarity=0.304 Sum_probs=254.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
|++|+|+|+|..+..++++++++|+++++++.+ ++++..++||+.+.. +|.|.+.+.++++ .+|+|.+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~--~~~pa~~~ad~~~~~-------~~~D~~~l~~~a~--~~dvit~e 70 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPD--PDSPAAQVADEVIVA-------DYDDVAALRELAE--QCDVITYE 70 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCC--CCCchhHhCceEEec-------CCCCHHHHHHHHh--cCCEEEeC
Confidence 579999999999999999999999999888654 444677889988753 4789999999996 67888654
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecC
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTH 196 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~ 196 (765)
..... ....+.+++. ..++|+++++.+++||..+|++++++|||+||+.... +.+++.++++++|||+|+||+.
T Consensus 71 ~e~i~--~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~--s~~~l~~~~~~~g~P~vlKp~~ 144 (372)
T PRK06019 71 FENVP--AEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVD--SAEDLEAALADLGLPAVLKTRR 144 (372)
T ss_pred cCCCC--HHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeC--CHHHHHHHHHHcCCcEEEEeCC
Confidence 33222 3334445554 3467999999999999999999999999999998765 8999999999999999999998
Q ss_pred CC-CCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 197 GG-GGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 197 g~-Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
|+ +|+|++++++.+|+..+++.+ ++.+++||+||++++|+++.++.+.+|++..+...+ ..++.......
T Consensus 145 ~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~~e-~~~~~gi~~~~ 215 (372)
T PRK06019 145 GGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPLVE-NVHRNGILRTS 215 (372)
T ss_pred CCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCCcc-cEEeCCEEEEE
Confidence 65 899999999999999988765 247999999999889999999988888876542111 12222323334
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
..|+ .+++++.+++.+++.+++++|||.|++++||++++ +|++||+|+|||++++..++...+++|+++.+++..+|.
T Consensus 216 ~~pa-~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ira~~Gl 293 (372)
T PRK06019 216 IAPA-RISAELQAQAEEIASRIAEELDYVGVLAVEFFVTG-DGELLVNEIAPRPHNSGHWTIEACSTSQFEQHLRAILGL 293 (372)
T ss_pred ECCC-CCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcC-CCeEEEEEecCCccCcccEEhhhcCccHHHHHHHHHcCC
Confidence 5788 69999999999999999999999999999999997 788999999999997777888899999999999999999
Q ss_pred CCCCCCCCcccceEEEEEEeccc
Q 041518 356 PLPLSQSEVPLLGHAFEARIYAE 378 (765)
Q Consensus 356 ~l~~~~~~~~~~g~ai~~ri~ae 378 (765)
|++ .....+.++...+..+
T Consensus 294 pl~----~~~~~~~~~m~nilg~ 312 (372)
T PRK06019 294 PLG----TTRLLSPAVMVNLLGD 312 (372)
T ss_pred CCC----CccccCceEEEEEECc
Confidence 987 2333445666667654
No 27
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=8.6e-37 Score=341.64 Aligned_cols=302 Identities=21% Similarity=0.309 Sum_probs=243.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
.+||||+|+|..+..++++++++|+++++++.+++. +...++|..+.++ +.|.+.++++++++++|+|+|+
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~--~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~vi~~ 82 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANA--PAMQVAHRSHVID-------MLDGDALRAVIEREKPDYIVPE 82 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC--chHHhhhheEECC-------CCCHHHHHHHHHHhCCCEEEEe
Confidence 469999999999999999999999999988876554 5666888877653 4788999999999999999998
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHH-HCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMG-AAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~-~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
.+... ......+++.|+++. |+++++++++||..+|+++. ++|||+|++..+. +.+++.++++++|||+|+||.
T Consensus 83 ~e~~~--~~~~~~l~~~g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~--s~~~l~~~~~~~g~P~VvKP~ 157 (395)
T PRK09288 83 IEAIA--TDALVELEKEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYRFAD--SLEELRAAVEEIGYPCVVKPV 157 (395)
T ss_pred eCcCC--HHHHHHHHhcCCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEEC--CHHHHHHHHHhcCCCEEEEeC
Confidence 65432 233455677788754 89999999999999999994 7999999987665 899999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeee
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIE 275 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e 275 (765)
.|+||+|+++++|.+|+.++++.+...++. ..+.+||||||+++.|+++.++.+++|....+...+. ..........
T Consensus 158 ~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 234 (395)
T PRK09288 158 MSSSGKGQSVVRSPEDIEKAWEYAQEGGRG--GAGRVIVEEFIDFDYEITLLTVRAVDGGTHFCAPIGH-RQEDGDYRES 234 (395)
T ss_pred CCcCCCCeEEECCHHHHHHHHHHHHhhccc--cCCCEEEEEecCCCEEEEEEEEEcCCCCEEEecCccc-EEECCEEEEE
Confidence 999999999999999999999887543211 1368999999998889999999887655444321110 1111111222
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCC
Q 041518 276 EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 276 ~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~ 355 (765)
..|+ .++++..+++.+++.+++++||+.|++|+||++++ +++|++|+|||+++....+-...|+|+++++++.++|.
T Consensus 235 ~~p~-~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~--~~~~viEinpR~~~~~~~~~~~~g~~~~~~~~~~~lG~ 311 (395)
T PRK09288 235 WQPQ-PMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKG--DEVYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGL 311 (395)
T ss_pred ECCC-CCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC--CeEEEEEecCCCCCCcceeeeecccCHHHHHHHHHcCC
Confidence 3577 68999999999999999999999999999999995 47999999999986544333345999999999999998
Q ss_pred CCC
Q 041518 356 PLP 358 (765)
Q Consensus 356 ~l~ 358 (765)
+++
T Consensus 312 ~~~ 314 (395)
T PRK09288 312 PIP 314 (395)
T ss_pred CCC
Confidence 774
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=7.4e-37 Score=336.92 Aligned_cols=309 Identities=18% Similarity=0.252 Sum_probs=253.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCC
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYG 118 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g 118 (765)
+|+|+|+|..+..++++++++|+++++++.+ ++++..++||+.+.. +|.|.+.|.+++++ +|.|.+...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~--~~~p~~~~ad~~~~~-------~~~d~~~i~~~a~~--~dvit~e~e 69 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPD--ANSPAVQVADHVVLA-------PFFDPAAIRELAES--CDVITFEFE 69 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCC--CCCChhHhCceeEeC-------CCCCHHHHHHHHhh--CCEEEeCcC
Confidence 4899999999999999999999999988654 445788899998732 47889999999975 577765543
Q ss_pred cccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCC
Q 041518 119 FLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGG 198 (765)
Q Consensus 119 ~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~ 198 (765)
.+. ......+++.|++ ++|+++++++++||..+|++|+++|||+|++.... +.+++.++++.+|||+|+||..|+
T Consensus 70 ~i~--~~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~--~~~~~~~~~~~~g~P~vvKp~~~g 144 (352)
T TIGR01161 70 HVD--VEALEKLEARGVK-LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIK--DEEELDAALQELGFPVVLKARTGG 144 (352)
T ss_pred cCC--HHHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeC--CHHHHHHHHHHcCCCEEEEeCCCC
Confidence 332 3445677888876 45999999999999999999999999999988765 889999999999999999999986
Q ss_pred -CCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeeeec
Q 041518 199 -GGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEA 277 (765)
Q Consensus 199 -Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e~~ 277 (765)
||+|++++++.+|+.++++... +..+|+||||++++|+++.++.+.+|++..+. .....++.........
T Consensus 145 ~~g~Gv~~v~~~~el~~a~~~~~--------~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~-~~~~~~~~g~~~~~~~ 215 (352)
T TIGR01161 145 YDGRGQYRIRNEADLPQAAKELG--------DRECIVEEFVPFERELSVIVARSADGETAFYP-VVENIHQDGILRYVVA 215 (352)
T ss_pred CCCCCEEEECCHHHHHHHHHhcC--------CCcEEEEecCCCCeEEEEEEEEcCCCCEEEEC-CcccEEeCCEEEEEEC
Confidence 8999999999999998887642 45899999999889999999987777765542 1112222232333456
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHcCCCC
Q 041518 278 PAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVANGEPL 357 (765)
Q Consensus 278 Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~G~~l 357 (765)
|+ .++++..+++.+++.+++++|||.|++++||++++ +|++||+|+|||+++...++...+++|.++++++.++|.|+
T Consensus 216 p~-~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~ra~~g~~l 293 (352)
T TIGR01161 216 PA-AVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLP-DGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLRAILGLPL 293 (352)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCcEEEEEecCCCCCcCcCchhhccccHHHHHHHHHcCCCC
Confidence 88 78999999999999999999999999999999997 77899999999999777788889999999999999999998
Q ss_pred CCCCCCcccceEEEEEEeccc
Q 041518 358 PLSQSEVPLLGHAFEARIYAE 378 (765)
Q Consensus 358 ~~~~~~~~~~g~ai~~ri~ae 378 (765)
+. +.....++...+...
T Consensus 294 ~~----~~~~~~~~m~n~~~~ 310 (352)
T TIGR01161 294 GS----TELLLPSVMVNLLGT 310 (352)
T ss_pred CC----ccccCCEEEEEEecC
Confidence 73 233444666666654
No 29
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=2.7e-35 Score=358.55 Aligned_cols=360 Identities=18% Similarity=0.206 Sum_probs=280.5
Q ss_pred CCEEEEEcCcH--HHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHh-CCCEE
Q 041518 37 IEKILIANRGE--IAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRT-GAQAI 113 (765)
Q Consensus 37 ~kkILI~g~G~--~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~-~~DaV 113 (765)
.|+|++++.+. .+..++++++++||+++++.+++.........+|..+.. ++.|.+.+++++++. .+++|
T Consensus 2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~-------d~~d~~~l~~~~~~~~~i~~V 74 (887)
T PRK02186 2 TGIFVFIESNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISA-------DTSDPDRIHRFVSSLDGVAGI 74 (887)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEc-------CCCCHHHHHHHHHhcCCCCEE
Confidence 47899998764 567789999999999999986654432222245665543 457889999999987 68999
Q ss_pred EeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEe
Q 041518 114 HPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIK 193 (765)
Q Consensus 114 ~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVK 193 (765)
+++.+... ...+.+++..|++ |++++++..++||..||++|+++|||+|++.... +.+++.++++.++||+|||
T Consensus 75 ~~~se~~v--~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~--~~~e~~~~~~~~~~PvVVK 148 (887)
T PRK02186 75 MSSSEYFI--EVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALA--LRAVALDALDGLTYPVVVK 148 (887)
T ss_pred EeCchhhH--HHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeC--CHHHHHHHHHhCCCCEEEE
Confidence 98854332 4556788889987 7899999999999999999999999999987655 8889999999999999999
Q ss_pred ecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEecccc-EEEEEeeecccccccee
Q 041518 194 PTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGK-VLHLYERDCSVQRRHQK 272 (765)
Q Consensus 194 P~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~-vv~l~~r~~s~~~~~~k 272 (765)
|.+|+||+||++|+|.+|+.++++.+... +.+.++|||||+| +||+++++.+..+. ++.+..+.......+..
T Consensus 149 P~~g~gS~GV~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G-~E~sVe~i~~~g~~~i~~i~~k~~~~~~~~ve 222 (887)
T PRK02186 149 PRMGSGSVGVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEG-DEYSVETLTVARGHQVLGITRKHLGPPPHFVE 222 (887)
T ss_pred eCCCCCCCCeEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccC-CcEEEEEEEECCcEEEEEEEeeecCCCCCeEE
Confidence 99999999999999999999999877532 2578999999995 89999999875432 33333332222222222
Q ss_pred eeeecCCCCCCHHHHHHHHHHHHHHHHHcCCC-ceeEEEEEEECCCCcEEEEEecccCCccc--cccceecCCCHHHHHH
Q 041518 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYH-NAGTVEFIVDTVSDQFYFMEMNTRLQVEH--PVTEMIVDQDLVEWQI 349 (765)
Q Consensus 273 ~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~~~~~g~~~~iEiN~R~~~~~--~~~e~~tGvDl~~~~i 349 (765)
.....|+ .++++..+++.+++.++++++|++ |++|+||++++ +++||||||||++++. .+++.++|+|++++++
T Consensus 223 ~g~~~P~-~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~--~g~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i 299 (887)
T PRK02186 223 IGHDFPA-PLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRG--DTVVIIEINPRLAGGMIPVLLEEAFGVDLLDHVI 299 (887)
T ss_pred eccccCC-CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEEC--CCEEEEEECCCCCCccHHHHHHHHHCcCHHHHHH
Confidence 3345688 588999999999999999999997 99999999994 5699999999998654 3678889999999999
Q ss_pred HHHcCCCCCCCCCCcccceE-EEEEEecccCCCCCCCCCCcceeEEeeCCC----CCCcEEEEecccCCCeeCCccCC--
Q 041518 350 RVANGEPLPLSQSEVPLLGH-AFEARIYAENVPKGFLPATGVLHHYHPVPV----SSKAVRVETGVEQGDTVSMHYDP-- 422 (765)
Q Consensus 350 ~~a~G~~l~~~~~~~~~~g~-ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~----~~~~vrv~~~v~~G~~v~~~~d~-- 422 (765)
+.++|.++... ....++ ++.+.+ .|.+|+|..+..+.. .++ +++...+++|+.|++.-|+
T Consensus 300 ~~~lG~~~~~~---~~~~~~~ai~~~~---------~~~~G~i~~i~~~~~~~~~~~~-~~~~~~~~~G~~v~~~~~~~~ 366 (887)
T PRK02186 300 DLHLGVAAFAD---PTAKRYGAIRFVL---------PARSGVLRGLLFLPDDIAARPE-LRFHPLKQPGDALRLEGDFRD 366 (887)
T ss_pred HHhCCCCCCCC---CCCCCeEEEEEEe---------cCCCceEEecccchhhcccCCe-EEEEEecCCCCEecCCCCCCC
Confidence 99999987642 222344 333222 234789988865431 345 6777889999999877554
Q ss_pred cceEEEEEe
Q 041518 423 MIANLWYGA 431 (765)
Q Consensus 423 ~~~~~i~~g 431 (765)
++|+++++|
T Consensus 367 ~~g~vi~~g 375 (887)
T PRK02186 367 RIAAVVCAG 375 (887)
T ss_pred ccEEEEEEc
Confidence 899999999
No 30
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=9.9e-36 Score=368.14 Aligned_cols=311 Identities=20% Similarity=0.294 Sum_probs=261.7
Q ss_pred CCCCEEEEEcCcHHH-----------HHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHH
Q 041518 35 QRIEKILIANRGEIA-----------YRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVD 103 (765)
Q Consensus 35 ~~~kkILI~g~G~~a-----------~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~ 103 (765)
..+|||||+|+|++. ..++++++++|++++++++++........++|..+.. | .+.+.+.+
T Consensus 5 ~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~-p-------~~~e~l~~ 76 (1066)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIE-P-------ITPEFVEK 76 (1066)
T ss_pred CCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEEC-C-------CCHHHHHH
Confidence 358999999999863 5799999999999999998887666677889997753 3 46799999
Q ss_pred HHHHhCCCEEEeCCCcc-cccH--HH--HHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHH
Q 041518 104 AAIRTGAQAIHPGYGFL-SESA--DF--AQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDL 178 (765)
Q Consensus 104 ~a~~~~~DaV~pg~g~l-sE~~--~~--a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e 178 (765)
+++++++|+|+|+.|.. ..+. .+ ...+++.|++++||++++++.+.||..+|++|+++|+|+|++.... +.++
T Consensus 77 ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~--s~~e 154 (1066)
T PRK05294 77 IIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAH--SMEE 154 (1066)
T ss_pred HHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeC--CHHH
Confidence 99999999999986532 1111 12 2357889999999999999999999999999999999999998655 8999
Q ss_pred HHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEE
Q 041518 179 MKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLH 258 (765)
Q Consensus 179 ~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~ 258 (765)
+.++++++|||+||||+.|.||+|++++++.+||.+++++....+ ..+.+|||+||+|.+|+++.++.|++|+++.
T Consensus 155 ~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s----~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~ 230 (1066)
T PRK05294 155 ALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLS----PVTEVLIEESLLGWKEYEYEVMRDKNDNCII 230 (1066)
T ss_pred HHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhC----CCCeEEEEEcccCceEEEEEEEEcCCCCEEE
Confidence 999999999999999999999999999999999999988655321 1368999999998789999999999888887
Q ss_pred EEeeecc-ccccc-eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCC-ceeEEEEEEECCCCcEEEEEecccCCccccc
Q 041518 259 LYERDCS-VQRRH-QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYH-NAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV 335 (765)
Q Consensus 259 l~~r~~s-~~~~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~ 335 (765)
+...+.- ...-| ......+|+..++++..+++.+++.+++++||+. |++++||++++++|++||+|||||++++..+
T Consensus 231 ~~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~~s~~~ 310 (1066)
T PRK05294 231 VCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRSSAL 310 (1066)
T ss_pred EeeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCCcceee
Confidence 6432211 00011 2335567886789999999999999999999999 9999999999647889999999999988888
Q ss_pred cceecCCCHHHHHHHHHcCCCCCC
Q 041518 336 TEMIVDQDLVEWQIRVANGEPLPL 359 (765)
Q Consensus 336 ~e~~tGvDl~~~~i~~a~G~~l~~ 359 (765)
++.++|+|+.+..+++++|.++..
T Consensus 311 ~s~~tG~pl~~~~~~~~lG~~l~~ 334 (1066)
T PRK05294 311 ASKATGYPIAKVAAKLAVGYTLDE 334 (1066)
T ss_pred eeHhhCCCHHHHHHHHHcCCChHH
Confidence 888999999999999999998763
No 31
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=1.9e-35 Score=364.30 Aligned_cols=303 Identities=18% Similarity=0.292 Sum_probs=259.3
Q ss_pred CCEEEEEcCcHH-----------HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHH
Q 041518 37 IEKILIANRGEI-----------AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAA 105 (765)
Q Consensus 37 ~kkILI~g~G~~-----------a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a 105 (765)
.|||||+|+|.+ +++++++++++|+++++++++++..+.....+|..+. .+ ++.+.+++++
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~-ep-------~~~e~vl~i~ 625 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYF-EP-------LTFEDVMNII 625 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEE-ec-------CCHHHHHHHH
Confidence 479999999975 6899999999999999999998887777888998774 23 5689999999
Q ss_pred HHhCCCEEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHH
Q 041518 106 IRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAK 185 (765)
Q Consensus 106 ~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ 185 (765)
+++++|+|+|++|... ...++..+++.|++++|+++++++.+.||..++++|+++|||+|++.... +.+++.+++++
T Consensus 626 ~~e~idgVI~~~gg~~-~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~--s~ee~~~~~~~ 702 (1050)
T TIGR01369 626 ELEKPEGVIVQFGGQT-PLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTAT--SVEEAVEFASE 702 (1050)
T ss_pred hhcCCCEEEEccCcHh-HHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEEC--CHHHHHHHHHh
Confidence 9999999999876432 24568889999999999999999999999999999999999999998665 89999999999
Q ss_pred hCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEE--eee
Q 041518 186 IGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLY--ERD 263 (765)
Q Consensus 186 ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~--~r~ 263 (765)
+|||+||||+++.||+||.+++|.+||..+++++...+ ...+++||+||++++|++++++.|+ |+++... ++-
T Consensus 703 igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s----~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e~~ 777 (1050)
T TIGR01369 703 IGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVS----PEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIMEHI 777 (1050)
T ss_pred cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhC----CCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEEee
Confidence 99999999999999999999999999999999876432 2468999999998899999999986 3554432 211
Q ss_pred ccccccc-eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCC
Q 041518 264 CSVQRRH-QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQ 342 (765)
Q Consensus 264 ~s~~~~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGv 342 (765)
... .-| .......|...++++..++|.+++.+++++||++|++|+||+++ ++++|+||+|||+++..|+++.++|+
T Consensus 778 ~~~-gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~--~~~~yvIEvNpR~s~t~p~vs~atGi 854 (1050)
T TIGR01369 778 EEA-GVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVK--DGEVYVIEVNPRASRTVPFVSKATGV 854 (1050)
T ss_pred ccc-CCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEE--CCeEEEEEEeCCCCchHHHHHHHHCC
Confidence 111 111 11233456667899999999999999999999999999999999 57899999999999888999999999
Q ss_pred CHHHHHHHHHcCCCCC
Q 041518 343 DLVEWQIRVANGEPLP 358 (765)
Q Consensus 343 Dl~~~~i~~a~G~~l~ 358 (765)
|++++.+++++|.+++
T Consensus 855 ~l~~~~~~~~lG~~l~ 870 (1050)
T TIGR01369 855 PLIKLATRVMLGKKLE 870 (1050)
T ss_pred CHHHHHHHHHcCCCcc
Confidence 9999999999999876
No 32
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=4.6e-35 Score=361.08 Aligned_cols=313 Identities=21% Similarity=0.311 Sum_probs=260.5
Q ss_pred CcCCCCEEEEEcCcHH-----------HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHH
Q 041518 33 KQQRIEKILIANRGEI-----------AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSI 101 (765)
Q Consensus 33 ~~~~~kkILI~g~G~~-----------a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~I 101 (765)
+...+|||||+|+|.+ +..++++++++|++++++++++........++|..|. .| .+.+.+
T Consensus 3 ~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~-ep-------~~~e~l 74 (1068)
T PRK12815 3 KDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYF-EP-------LTVEFV 74 (1068)
T ss_pred CCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEE-CC-------CCHHHH
Confidence 3346899999999976 5689999999999999999887665555568888764 33 567999
Q ss_pred HHHHHHhCCCEEEeCCCccc-ccHH--H--HHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCH
Q 041518 102 VDAAIRTGAQAIHPGYGFLS-ESAD--F--AQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDI 176 (765)
Q Consensus 102 l~~a~~~~~DaV~pg~g~ls-E~~~--~--a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~ 176 (765)
.++++++++|+|+|..|... .+.. + ...+++.|++++|++++++..+.||..+|++|+++|+|+|++.... +.
T Consensus 75 ~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~--s~ 152 (1068)
T PRK12815 75 KRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVT--SV 152 (1068)
T ss_pred HHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeC--CH
Confidence 99999999999999765321 1111 1 2357889999999999999999999999999999999999987665 89
Q ss_pred HHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccE
Q 041518 177 DLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKV 256 (765)
Q Consensus 177 ~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~v 256 (765)
+++.++++++|||+||||+.|.||+|+.+++|.+||.++++.....+. ..++|||+||+|.+|+++.++.|.+|++
T Consensus 153 ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~----~~~vLVEe~I~G~~E~sv~v~rD~~g~~ 228 (1068)
T PRK12815 153 EEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASP----IHQCLLEESIAGWKEIEYEVMRDRNGNC 228 (1068)
T ss_pred HHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCC----CCeEEEEEccCCCeEEEEEEEEcCCCCE
Confidence 999999999999999999999999999999999999999977654311 2589999999987899999999988888
Q ss_pred EEEEeeec-c-ccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCcccc
Q 041518 257 LHLYERDC-S-VQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHP 334 (765)
Q Consensus 257 v~l~~r~~-s-~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~ 334 (765)
+.+...+. . ........+..+|+..++++..+++.+++.+++++||+.|.+++||++++++|++|++|||||+++...
T Consensus 229 ~~~~~~e~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s~~ 308 (1068)
T PRK12815 229 ITVCNMENIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRSSA 308 (1068)
T ss_pred EEEEeceecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccchh
Confidence 77643211 0 000111234457886689999999999999999999999999999999974578999999999998888
Q ss_pred ccceecCCCHHHHHHHHHcCCCCCC
Q 041518 335 VTEMIVDQDLVEWQIRVANGEPLPL 359 (765)
Q Consensus 335 ~~e~~tGvDl~~~~i~~a~G~~l~~ 359 (765)
++..++|+++.+..+++++|.+|+.
T Consensus 309 l~~~atG~pl~~~~~~~alG~~l~e 333 (1068)
T PRK12815 309 LASKATGYPIAKIAAKLAVGYTLNE 333 (1068)
T ss_pred hhhHhhCCcHHHHHHHHHcCCChHH
Confidence 9899999999999999999999763
No 33
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.2e-34 Score=356.17 Aligned_cols=305 Identities=19% Similarity=0.286 Sum_probs=256.5
Q ss_pred CCCCEEEEEcCcHH-----------HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHH
Q 041518 35 QRIEKILIANRGEI-----------AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVD 103 (765)
Q Consensus 35 ~~~kkILI~g~G~~-----------a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~ 103 (765)
...|||||+|+|.+ ++++++++|++|+++++++.+++..+....++|..|. .+ .+.+.+++
T Consensus 552 ~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~-e~-------~~~e~v~~ 623 (1066)
T PRK05294 552 SDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYF-EP-------LTLEDVLE 623 (1066)
T ss_pred CCCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheee-cC-------CCHHHHHH
Confidence 35689999999873 4788999999999999999988887777888998764 33 56899999
Q ss_pred HHHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHH
Q 041518 104 AAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEA 183 (765)
Q Consensus 104 ~a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~ 183 (765)
+++++++|+|++.+|.... ..++..+++.|++++|++++++..+.||..++++|+++|||+|++.... +.+++.+++
T Consensus 624 i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~--s~ee~~~~~ 700 (1066)
T PRK05294 624 IIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTAT--SVEEALEVA 700 (1066)
T ss_pred HHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEEC--CHHHHHHHH
Confidence 9999999999987653221 3567889999999999999999999999999999999999999998765 899999999
Q ss_pred HHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEE--Ee
Q 041518 184 AKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHL--YE 261 (765)
Q Consensus 184 ~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l--~~ 261 (765)
+.+|||+||||+.+.||+||.+++|.+||..+++.+...+ .+.+++||+||+|.+|+++++++|++ +++.. .+
T Consensus 701 ~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s----~~~~vlIEefI~G~~E~sV~~v~dg~-~v~i~~i~e 775 (1066)
T PRK05294 701 EEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVS----PDHPVLIDKFLEGAIEVDVDAICDGE-DVLIGGIME 775 (1066)
T ss_pred HhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhC----CCCcEEEEecCCCCEEEEEEEEecCC-eEEEeeeEE
Confidence 9999999999999999999999999999999998876431 24689999999976699999998865 33332 12
Q ss_pred eeccccccc-eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceec
Q 041518 262 RDCSVQRRH-QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIV 340 (765)
Q Consensus 262 r~~s~~~~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~t 340 (765)
+-.. ..-| .......|...++++..+++.+++.+++++||+.|++++||+++ ++++|+||+|||+++..|+++.++
T Consensus 776 ~i~~-~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~--~~~~yViEiNpR~s~t~~~~s~at 852 (1066)
T PRK05294 776 HIEE-AGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVK--DDEVYVIEVNPRASRTVPFVSKAT 852 (1066)
T ss_pred eeee-ccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEE--CCeEEEEEEecCCCccHHHHHHHh
Confidence 1100 0111 11223345557899999999999999999999999999999998 678999999999998788889999
Q ss_pred CCCHHHHHHHHHcCCCCC
Q 041518 341 DQDLVEWQIRVANGEPLP 358 (765)
Q Consensus 341 GvDl~~~~i~~a~G~~l~ 358 (765)
|+|++++.+++++|.+++
T Consensus 853 Gi~~~~~~~~~~lG~~l~ 870 (1066)
T PRK05294 853 GVPLAKIAARVMLGKKLA 870 (1066)
T ss_pred CccHHHHHHHHHcCCChh
Confidence 999999999999999876
No 34
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=2.4e-34 Score=354.71 Aligned_cols=302 Identities=22% Similarity=0.347 Sum_probs=254.7
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHH
Q 041518 36 RIEKILIANRGEI-----------AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDA 104 (765)
Q Consensus 36 ~~kkILI~g~G~~-----------a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~ 104 (765)
..|||||+|+|.+ ++.++++++++|+++++++++++..+.....+|..|. .| .+.+.++++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~-ep-------~~~e~vl~I 625 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYF-EP-------LTLEDVLNV 625 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEE-cc-------CCHHHHHHH
Confidence 3589999999864 5678999999999999999999888888888998775 33 567999999
Q ss_pred HHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHH
Q 041518 105 AIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAA 184 (765)
Q Consensus 105 a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~ 184 (765)
++++++|+|+|.+|... ...++..+++.|++++|++++++..+.||..|+++|+++|||+|++.... +.+++.++++
T Consensus 626 ~~~e~~dgVI~~~g~~~-~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~--s~ee~~~~~~ 702 (1068)
T PRK12815 626 AEAENIKGVIVQFGGQT-AINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTAT--DEEEAFAFAK 702 (1068)
T ss_pred HhhcCCCEEEEecCcHH-HHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeC--CHHHHHHHHH
Confidence 99999999999865431 14567889999999999999999999999999999999999999998655 8999999999
Q ss_pred HhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeec
Q 041518 185 KIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDC 264 (765)
Q Consensus 185 ~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~ 264 (765)
++|||+|+||+++.||+||++++|.+||..+++.+. ..+.+++||+||+ |.|++++++.|++. ++..+..+.
T Consensus 703 ~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~-G~E~~Vd~i~dg~~-v~i~~i~e~ 774 (1068)
T PRK12815 703 RIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFID-GKEYEVDAISDGED-VTIPGIIEH 774 (1068)
T ss_pred hcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeec-CceEEEEEEEcCCc-eEEeeEEEE
Confidence 999999999999999999999999999999998761 1257899999998 57999999998753 332221111
Q ss_pred c-ccccc-eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCC
Q 041518 265 S-VQRRH-QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQ 342 (765)
Q Consensus 265 s-~~~~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGv 342 (765)
. ...-| .......|...++++..++|.+.+.+++++||++|++++||+++ ++++|+||+|||+++..++++.++|+
T Consensus 775 ~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~--~~~~yviEiNpR~s~t~~~~skatGv 852 (1068)
T PRK12815 775 IEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLA--NDEIYVLEVNPRASRTVPFVSKATGV 852 (1068)
T ss_pred eeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEE--CCcEEEEEEeCCCCccHHHHHHHHCC
Confidence 0 00111 11222345447899999999999999999999999999999998 57899999999999888888999999
Q ss_pred CHHHHHHHHHcCCCCC
Q 041518 343 DLVEWQIRVANGEPLP 358 (765)
Q Consensus 343 Dl~~~~i~~a~G~~l~ 358 (765)
|++++.+++++|.++.
T Consensus 853 ~l~~~~~~~~lG~~l~ 868 (1068)
T PRK12815 853 PLAKLATKVLLGKSLA 868 (1068)
T ss_pred CHHHHHHHHHcCCChh
Confidence 9999999999999876
No 35
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=100.00 E-value=4.6e-34 Score=311.37 Aligned_cols=294 Identities=16% Similarity=0.205 Sum_probs=234.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCC--CeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLG--IRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~G--i~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
|.||||+|.|... .+++++++.| +++++++.+ +.++....+|+.+.++... +-...+.++++++++++|+|+
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~--~~~~~~~~~d~~~~~p~~~---~~~~~~~l~~~~~~~~id~ii 74 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADIS--ELAPALYFADKFYVVPKVT---DPNYIDRLLDICKKEKIDLLI 74 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECCC--CcchhhHhccCcEecCCCC---ChhHHHHHHHHHHHhCCCEEE
Confidence 5799999988665 8899999994 999987665 4456778899888765421 122458999999999999999
Q ss_pred eCCCcccc-cHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHH--HHHHhCCcEE
Q 041518 115 PGYGFLSE-SADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKS--EAAKIGYPIL 191 (765)
Q Consensus 115 pg~g~lsE-~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~--~~~~ig~PvV 191 (765)
|+.+...+ .+..++.++..|+++++++++++..+.||..|+++++++|+|+|+++... +.+++.+ +..+++||+|
T Consensus 75 ~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~--~~~~~~~~~~~~~~~~P~v 152 (326)
T PRK12767 75 PLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPE--SLEDFKAALAKGELQFPLF 152 (326)
T ss_pred ECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEccc--CHHHHHhhhhcccCCCCEE
Confidence 98643111 12345667778999999999999999999999999999999999987654 7888877 5578899999
Q ss_pred EeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccce
Q 041518 192 IKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQ 271 (765)
Q Consensus 192 VKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~ 271 (765)
+||..|.||+|+++++|.+|+.++++.. .++++|+||+ |+|++++++.+.+|+++.+..++.......
T Consensus 153 iKP~~g~~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~-G~e~~v~~~~~~~G~~~~~~~~~~~~~~~g- 220 (326)
T PRK12767 153 VKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIE-GQEYTVDVLCDLNGEVISIVPRKRIEVRAG- 220 (326)
T ss_pred EEeCCCCCccCeEEeCCHHHHHHHHHhC----------CCeEEEeccC-CceEEEEEEEcCCCCEEEEEEeeeeeecCC-
Confidence 9999999999999999999999887643 4899999998 589999999987788877765433111111
Q ss_pred eeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHH
Q 041518 272 KIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 272 k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~ 351 (765)
....... . ..+++.+.+.++++++|++|.+++||+++ +|++|+||+|||++++.++ ...+|+|+.+++++.
T Consensus 221 ~~~~~~~---~---~~~~i~~~~~~i~~~lg~~G~~~vd~~~~--~g~~~viEiNpR~~g~~~~-~~~~G~n~~~~~~~~ 291 (326)
T PRK12767 221 ETSKGVT---V---KDPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLFEINPRFGGGYPL-SYMAGANEPDWIIRN 291 (326)
T ss_pred ceeEEEE---c---CCHHHHHHHHHHHHhcCCeeeEEEEEEEE--CCeEEEEEEeCCCCCcchh-hHhhCCCHHHHHHHH
Confidence 0111001 1 12678999999999999999999999999 4789999999999976664 456899999999999
Q ss_pred HcCCCCCC
Q 041518 352 ANGEPLPL 359 (765)
Q Consensus 352 a~G~~l~~ 359 (765)
++|++++.
T Consensus 292 ~~g~~~~~ 299 (326)
T PRK12767 292 LLGGENEP 299 (326)
T ss_pred HcCCCCCc
Confidence 99998763
No 36
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=5e-33 Score=313.00 Aligned_cols=294 Identities=16% Similarity=0.184 Sum_probs=224.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|++||||+|+|.-...+++++++.|++++.+..+.++ ....+++.++.+ +..|.+.|+++|+++++|+|++
T Consensus 1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~Np--g~~~~a~~~~~~-------~~~d~e~l~~~~~~~~id~Vi~ 71 (435)
T PRK06395 1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGHENP--SIKKLSKKYLFY-------DEKDYDLIEDFALKNNVDIVFV 71 (435)
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCh--hhhhcccceeec-------CCCCHHHHHHHHHHhCCCEEEE
Confidence 6789999999988888999999999988777543232 334456654433 3478899999999999999999
Q ss_pred CCCc-ccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEee
Q 041518 116 GYGF-LSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKP 194 (765)
Q Consensus 116 g~g~-lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP 194 (765)
+.+. +. ..++..+++.|++++||+.+++++++||..||++|.++|||+|+.+... .+.+++..++.+++||+||||
T Consensus 72 ~~d~~l~--~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~-~~~~e~~~~~~~~~~PvVVKP 148 (435)
T PRK06395 72 GPDPVLA--TPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNAC-FSEKDAARDYITSMKDVAVKP 148 (435)
T ss_pred CCChHHH--HHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccccee-CChHHHHHHHHhhCCCEEEEe
Confidence 8653 22 3456677889999999999999999999999999999999998665222 256777787788899999999
Q ss_pred cCCCCCccEEEECCh-hHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceee
Q 041518 195 THGGGGKGMRIVQSP-NDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKI 273 (765)
Q Consensus 195 ~~g~Gg~Gv~~v~s~-~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~ 273 (765)
.+++||+||+++.+. +++.+++..+.... . .++.+||||||+ |.|++++++.|+. .+..+. ..+.|.+.
T Consensus 149 ~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~-G~E~Svd~~~dg~-~~~~l~-----~~~d~~r~ 218 (435)
T PRK06395 149 IGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMT-GEEFSLQAFSDGK-HLSFMP-----IVQDYKRA 218 (435)
T ss_pred CCCCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecC-CceEEEEEEEcCC-eEEEec-----ccceeeec
Confidence 999999999999653 34455554443311 1 136899999999 5799999999765 343331 11122111
Q ss_pred ee------------ec----CCCCCCHHHHHHHHHHHHHHHHHcC-----CCceeEEEEEEECCCCcEEEEEecccCCcc
Q 041518 274 IE------------EA----PAPNVTHDFRALLGQAAVSAAKAVS-----YHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332 (765)
Q Consensus 274 ~e------------~~----Pa~~l~~~~~~~l~~~a~~i~~alg-----~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~ 332 (765)
.+ .+ |.|.++++..+++.+++.+++++|+ |+|+.++||++++ ++||+||+|+|++
T Consensus 219 ~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~--~gp~ViE~n~R~g-- 294 (435)
T PRK06395 219 YEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP--NGVKVIEINARFA-- 294 (435)
T ss_pred ccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC--CCcEEEEEeCCCC--
Confidence 11 11 4556899999999999999999999 6688889999984 5599999999995
Q ss_pred ccccc---eecCCCHHHHHHHHHcCC
Q 041518 333 HPVTE---MIVDQDLVEWQIRVANGE 355 (765)
Q Consensus 333 ~~~~e---~~tGvDl~~~~i~~a~G~ 355 (765)
.|.++ ...+.|+++.+++++.|.
T Consensus 295 dpe~~~il~~l~~d~~~~~~~~~~g~ 320 (435)
T PRK06395 295 DPEGINVLYLLKSDFVETLHQIYSGN 320 (435)
T ss_pred CccHHhhhhhcccCHHHHHHHHhcCC
Confidence 43222 334899999999999993
No 37
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=3e-33 Score=313.91 Aligned_cols=299 Identities=18% Similarity=0.193 Sum_probs=228.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
++||||+|+|.-...+++++++.++.+.+.....+..... .+ ....+ .-++.|.+.|+++|+++++|+|+++
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~--~~-~~~~~-----~~~~~d~~~l~~~a~~~~iD~Vv~g 75 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPD--DE-LLPAD-----SFSILDKSSVQSFLKSNPFDLIVVG 75 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhc--cc-ccccc-----CcCcCCHHHHHHHHHHcCCCEEEEC
Confidence 3599999999887889999999986544333333331111 10 00000 1256899999999999999999998
Q ss_pred CCccccc---HHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEe
Q 041518 117 YGFLSES---ADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIK 193 (765)
Q Consensus 117 ~g~lsE~---~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVK 193 (765)
. |+ ..+++.++++|++++||+..++++++||..+|++|+++|||+|++.... +.+++.+++++++||+|||
T Consensus 76 ~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~--~~~ea~~~~~~~~~PvVVK 149 (426)
T PRK13789 76 P----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFT--EYSSSLSYLESEMLPIVIK 149 (426)
T ss_pred C----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeC--CHHHHHHHHHhcCCCEEEE
Confidence 6 44 3467888999999999999999999999999999999999999987654 8899999999999999999
Q ss_pred ecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCC--CCcEEEecccCCCeeEEEEEEEeccccEEEEE-eeecc-cccc
Q 041518 194 PTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFG--INTILLEKYITQPRHIEVQIFGDKYGKVLHLY-ERDCS-VQRR 269 (765)
Q Consensus 194 P~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg--~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~-~r~~s-~~~~ 269 (765)
|..++||+||+++++.+|+.++++.+.... .|+ +..++|||||+| +|+++.++.|+. +++.+. .++.. ....
T Consensus 150 p~~~~~gkGV~vv~~~eel~~a~~~~~~~~--~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg~-~~~~lp~~~d~k~~~d~ 225 (426)
T PRK13789 150 ADGLAAGKGVTVATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLLPAAQDHKRAFDG 225 (426)
T ss_pred eCCCCCCCcEEEECCHHHHHHHHHHHHhhc--cccCCCCeEEEEECcCC-eEEEEEEEECCC-EEEEccceEecccccCC
Confidence 999999999999999999999999887542 243 248999999995 899999998764 333331 12110 0000
Q ss_pred -----ceeeeeecCCCCCCHHHHHHHHH-HHHHHH---HHcC--CCceeEEEEEEECCCCcEEEEEecccCCccccccce
Q 041518 270 -----HQKIIEEAPAPNVTHDFRALLGQ-AAVSAA---KAVS--YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEM 338 (765)
Q Consensus 270 -----~~k~~e~~Pa~~l~~~~~~~l~~-~a~~i~---~alg--~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~ 338 (765)
.......+|+|.++++..+++.+ ++.+++ ++.| |+|+.++||++++ +|++|++|+|+|+ ++|.++.
T Consensus 226 d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g~~~vlE~n~R~--Gdpe~~~ 302 (426)
T PRK13789 226 DQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EGEPKVVEFNCRF--GDPETQC 302 (426)
T ss_pred CCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CCCEEEEEEecCC--CCcHhhh
Confidence 11223457887789888888764 444544 5556 7899999999996 7779999999999 4655544
Q ss_pred e---cCCCHHHHHHHHHcCCC
Q 041518 339 I---VDQDLVEWQIRVANGEP 356 (765)
Q Consensus 339 ~---tGvDl~~~~i~~a~G~~ 356 (765)
+ ++.||++++++++.|+.
T Consensus 303 ll~~l~~dl~~~~~~~~~g~l 323 (426)
T PRK13789 303 VLAMLDGDLLELLYAASTGKI 323 (426)
T ss_pred hhccCCCCHHHHHHHHHcCCC
Confidence 3 36899999999999964
No 38
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=8.6e-33 Score=312.08 Aligned_cols=298 Identities=16% Similarity=0.223 Sum_probs=223.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccc-cEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSA-DEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~a-D~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
||||+|+|..+..++++++++|+.+.++....++. ....+ +..+.+ ++.|.+.|+++++++++|+|+++.
T Consensus 2 kiliiG~G~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~d~~~l~~~~~~~~id~vi~~~ 72 (423)
T TIGR00877 2 KVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAG--TARLAKNKNVAI-------SITDIEALVEFAKKKKIDLAVIGP 72 (423)
T ss_pred EEEEECCChHHHHHHHHHHhCCCccEEEEECCCHH--HhhhcccccccC-------CCCCHHHHHHHHHHhCCCEEEECC
Confidence 89999999999999999999997644443332221 12222 222212 458899999999999999999986
Q ss_pred CcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCc-EEEeecC
Q 041518 118 GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYP-ILIKPTH 196 (765)
Q Consensus 118 g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~P-vVVKP~~ 196 (765)
+... ...+++.++++|++++||+++++++++||..+|++|+++|||+|++.... +.+++.++++++||| +|+||..
T Consensus 73 e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~--~~~~~~~~~~~~g~P~~VvKp~~ 149 (423)
T TIGR00877 73 EAPL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFT--DPEEALSYIQEKGAPAIVVKADG 149 (423)
T ss_pred chHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEEC--CHHHHHHHHHhcCCCeEEEEECC
Confidence 3211 13467888999999999999999999999999999999999999987655 899999999999999 9999999
Q ss_pred CCCCccEEEECChhHHHHHHHHHHHHHHhcCC--CCcEEEecccCCCeeEEEEEEEeccccEEEEE-eeecc-cc-----
Q 041518 197 GGGGKGMRIVQSPNDFVDSFLGAQREAAASFG--INTILLEKYITQPRHIEVQIFGDKYGKVLHLY-ERDCS-VQ----- 267 (765)
Q Consensus 197 g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg--~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~-~r~~s-~~----- 267 (765)
|+||+|++++++.+|+.++++.+.... |+ ...+|||+||+| .|++++++.|+. .+..+. .++.. ..
T Consensus 150 ~~gg~Gv~~v~~~~el~~~~~~~~~~~---~g~~~~~~lvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~~~~~~~~~~~ 224 (423)
T TIGR00877 150 LAAGKGVIVAKTNEEAIKAVEEILEQK---FGDAGERVVIEEFLDG-EEVSLLAFVDGK-TVIPMPPAQDHKRALEGDKG 224 (423)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHh---cCCCCCeEEEEECccC-ceEEEEEEEcCC-eEEeceeeeeeeecccCCCC
Confidence 999999999999999999998876543 32 358999999995 899999998764 343332 11110 00
Q ss_pred ccceeeeeecCCCCCCHHHHHHH----HHHHHHHHHHcC--CCceeEEEEEEECCCCcEEEEEecccCCccccc-cceec
Q 041518 268 RRHQKIIEEAPAPNVTHDFRALL----GQAAVSAAKAVS--YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPV-TEMIV 340 (765)
Q Consensus 268 ~~~~k~~e~~Pa~~l~~~~~~~l----~~~a~~i~~alg--~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~-~e~~t 340 (765)
..........|++.++++...++ .+.+.+.+.++| |.|++|+||++++ +| +|++|+|||+++.... ....+
T Consensus 225 ~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g-~~viEin~R~g~~~~~~~~~~~ 302 (423)
T TIGR00877 225 PNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG-PKVLEFNCRFGDPETQAVLPLL 302 (423)
T ss_pred CCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC-cEEEEEEccCCCccceeEeccc
Confidence 00011122456656776655443 333445555555 6799999999996 55 9999999999743322 22346
Q ss_pred CCCHHHHHHHHHcCC
Q 041518 341 DQDLVEWQIRVANGE 355 (765)
Q Consensus 341 GvDl~~~~i~~a~G~ 355 (765)
++|+.+.+++++.|.
T Consensus 303 ~~dl~~~~~~~~~g~ 317 (423)
T TIGR00877 303 KSDLLEVCLAAVEGK 317 (423)
T ss_pred CCCHHHHHHHHHcCC
Confidence 799999999999997
No 39
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=7.2e-33 Score=312.27 Aligned_cols=300 Identities=19% Similarity=0.195 Sum_probs=223.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHC-CCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 39 KILIANRGEIAYRIMRTAKRL-GIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~-Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
||||+|.|.....+++++++. |+.++.+. ..++ ...+.++ .+.+ ++.|.+.|+++++++++|+|+++.
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i~~~-~~n~--g~~~~~~-~~~~-------~~~d~~~l~~~~~~~~id~vi~~~ 70 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKVYVA-PGNA--GTALLAE-NVVI-------DVTDIEALVAFAKEEGIDLTVVGP 70 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEe-CCCH--HHHhhcc-ccCC-------CCCCHHHHHHHHHHhCCCEEEECC
Confidence 899999998777899999886 55555552 2122 2222233 2222 458999999999999999999885
Q ss_pred CcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCC
Q 041518 118 GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHG 197 (765)
Q Consensus 118 g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g 197 (765)
+... ...+++.++++|++++||+++++.+++||..+|++|+++|||+|++.... +.+++.++++.++||+||||..|
T Consensus 71 e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~--~~~~~~~~~~~~~~P~VvKP~~~ 147 (420)
T PRK00885 71 EAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFT--DAEEALAYLDEKGAPIVVKADGL 147 (420)
T ss_pred chHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeC--CHHHHHHHHHHcCCCEEEEeCCC
Confidence 3211 13556788899999999999999999999999999999999999987654 88999999999999999999999
Q ss_pred CCCccEEEECChhHHHHHHHHHHHHHHhcCC--CCcEEEecccCCCeeEEEEEEEeccccEEEEE-eeecc-cc-----c
Q 041518 198 GGGKGMRIVQSPNDFVDSFLGAQREAAASFG--INTILLEKYITQPRHIEVQIFGDKYGKVLHLY-ERDCS-VQ-----R 268 (765)
Q Consensus 198 ~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg--~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~-~r~~s-~~-----~ 268 (765)
+||+|+++++|.+|+.++++.+...+ .|+ ...+||||||+| +|+++.++.|++ .+..+. .++.. .. .
T Consensus 148 ~gs~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 223 (420)
T PRK00885 148 AAGKGVVVAMTLEEAKAAVDDMLAGN--KFGDAGARVVIEEFLDG-EEASFFAFVDGE-NVLPLPTAQDHKRAGDGDTGP 223 (420)
T ss_pred CCCCcEEEeCCHHHHHHHHHHHhhcc--cccCCCCeEEEEEccCC-cEEEEEEEECCC-ceEeceeeEeeeecccCCCCC
Confidence 99999999999999999998876532 122 358999999995 899999998764 444432 11110 00 0
Q ss_pred cceeeeeecCCCCCCHHHHHHHHH-HHHH---HHHHcC--CCceeEEEEEEECCCCcEEEEEecccCCcc-ccccceecC
Q 041518 269 RHQKIIEEAPAPNVTHDFRALLGQ-AAVS---AAKAVS--YHNAGTVEFIVDTVSDQFYFMEMNTRLQVE-HPVTEMIVD 341 (765)
Q Consensus 269 ~~~k~~e~~Pa~~l~~~~~~~l~~-~a~~---i~~alg--~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~-~~~~e~~tG 341 (765)
........+|++.++++..+++.+ ++.+ +++++| |+|++|+||++++ + ++|++|+|+|+++. +......++
T Consensus 224 ~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~-~-g~~viEin~R~g~~~~~~~~~~~~ 301 (420)
T PRK00885 224 NTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITK-D-GPKVIEFNARFGDPETQVVLPRLK 301 (420)
T ss_pred CCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEEC-C-CcEEEEEecccCCccHHhhhhhcc
Confidence 001112346776688877766654 5444 444555 5699999999995 4 59999999999732 223334457
Q ss_pred CCHHHHHHHHHcCCCCC
Q 041518 342 QDLVEWQIRVANGEPLP 358 (765)
Q Consensus 342 vDl~~~~i~~a~G~~l~ 358 (765)
.|+.+.+++++.|.+.+
T Consensus 302 ~d~~~~~~~~~~g~~~~ 318 (420)
T PRK00885 302 SDLVELLLAAADGKLDE 318 (420)
T ss_pred CCHHHHHHHHHcCCCCC
Confidence 79999999999997654
No 40
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=4.9e-32 Score=304.34 Aligned_cols=300 Identities=16% Similarity=0.184 Sum_probs=226.5
Q ss_pred EEEcCcHHHHHHHHHHHHCC--CeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCC
Q 041518 41 LIANRGEIAYRIMRTAKRLG--IRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYG 118 (765)
Q Consensus 41 LI~g~G~~a~~iiraar~~G--i~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g 118 (765)
||+|+|.-...++.++++.. .++++ .+. .+.....++.+.+++ -++.|.+.|+++|+++++|+|++++.
T Consensus 1 lviG~ggrehal~~~l~~s~~~~~~~~---~pg--n~g~~~~~~~~~vp~----~~~~d~~~l~~~a~~~~id~vvvg~E 71 (434)
T PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFC---APG--NAGIATSGDATCVPD----LDISDSAAVISFCRKWGVGLVVVGPE 71 (434)
T ss_pred CEEcccHHHHHHHHHHHhCCCCCEEEE---CCC--CHHHhhhccceeecC----CCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 78998866666888888865 34333 222 234445555544422 24688999999999999999999863
Q ss_pred cccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCC
Q 041518 119 FLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGG 198 (765)
Q Consensus 119 ~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~ 198 (765)
... .+.+++.++..|++++||+++++++++||..+|++|+++|||+|++.... +.+++.+++++++||+||||..++
T Consensus 72 ~~l-v~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~--~~~e~~~~~~~~g~PvVVKp~~~~ 148 (434)
T PLN02257 72 APL-VAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFT--DPAAAKKYIKEQGAPIVVKADGLA 148 (434)
T ss_pred hHH-HHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeC--CHHHHHHHHHHcCCCEEEEcCCCC
Confidence 211 04677888999999999999999999999999999999999999987654 889999999999999999999999
Q ss_pred CCccEEEECChhHHHHHHHHHHHHHHhcCC--CCcEEEecccCCCeeEEEEEEEeccccEEEEEee-ec-cccc-----c
Q 041518 199 GGKGMRIVQSPNDFVDSFLGAQREAAASFG--INTILLEKYITQPRHIEVQIFGDKYGKVLHLYER-DC-SVQR-----R 269 (765)
Q Consensus 199 Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg--~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r-~~-s~~~-----~ 269 (765)
||+||+++++.+|+.++++.+... ..|+ ...+||||||+| +|+++.++.|+. +++.+..- +. .+.. .
T Consensus 149 ~GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~G-~E~Sv~~~~dG~-~~~pl~~~~dhkr~~d~d~g~n 224 (434)
T PLN02257 149 AGKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDG-EEASFFALVDGE-NAIPLESAQDHKRVGDGDTGPN 224 (434)
T ss_pred CCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CEEEEEEEECCC-cEEEEEeeeecccccCCCCCCC
Confidence 999999999999999999887532 2343 368999999995 699999998865 55555321 10 0000 0
Q ss_pred ceeeeeecCCCCCCHHHHHHHH-HHHH---HHHHHcC--CCceeEEEEEEE-CCCCcEEEEEecccCCc-cccccceecC
Q 041518 270 HQKIIEEAPAPNVTHDFRALLG-QAAV---SAAKAVS--YHNAGTVEFIVD-TVSDQFYFMEMNTRLQV-EHPVTEMIVD 341 (765)
Q Consensus 270 ~~k~~e~~Pa~~l~~~~~~~l~-~~a~---~i~~alg--~~G~~~vEf~~~-~~~g~~~~iEiN~R~~~-~~~~~e~~tG 341 (765)
.......+|+|.+++++.+++. +++. +.+++.| |.|+.++||+++ + +|+|||||+|+|+|. ++..+...++
T Consensus 225 tggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~-~g~p~vLE~N~R~Gdpe~~~~l~~l~ 303 (434)
T PLN02257 225 TGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKK-SGLPKLLEYNVRFGDPECQVLMMRLE 303 (434)
T ss_pred CCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcC-CCCEEEEEEECCCCCCchheEehhhc
Confidence 1122335688789998888754 4443 3444555 559999999998 5 678999999999983 3444444689
Q ss_pred CCHHHHHHHHHcCCCC
Q 041518 342 QDLVEWQIRVANGEPL 357 (765)
Q Consensus 342 vDl~~~~i~~a~G~~l 357 (765)
.||++++++++.|+..
T Consensus 304 ~Dl~~~~~~~~~g~l~ 319 (434)
T PLN02257 304 SDLAQVLLAACKGELS 319 (434)
T ss_pred CCHHHHHHHHHcCCCC
Confidence 9999999999999743
No 41
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=4e-31 Score=299.74 Aligned_cols=370 Identities=13% Similarity=0.095 Sum_probs=249.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHC--CCeEEEEecCCCCCCccccc----ccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 39 KILIANRGEIAYRIMRTAKRL--GIRTVAVYSDADRDSLHVKS----ADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~--Gi~vvav~s~~d~~~~~~~~----aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
||||+|+|.-...++.++++. |++++++..+.++ ..... +|..+.+ +..|.+.|+++|+++++|+
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Np--g~~~~~~~~~~~~~~~-------~~~d~~~l~~~a~~~~id~ 72 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNP--GINSVVKATGGEYFIG-------NINSPEEVKKVAKEVNPDL 72 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCCh--hheeecccccCceEec-------CCCCHHHHHHHHHHhCCCE
Confidence 899999998777889999998 9999988664443 22222 2444433 3478899999999999999
Q ss_pred EEeCCCcccccH---HHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCc
Q 041518 113 IHPGYGFLSESA---DFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYP 189 (765)
Q Consensus 113 V~pg~g~lsE~~---~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~P 189 (765)
|++|. |.+ .+++.++++|++++||+++++++++||..||++|+++|||+|+.+... .+.+++.++++.. +|
T Consensus 73 Vi~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~-~~~~ea~~~~~~~-~P 146 (486)
T PRK05784 73 VVIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVF-YDVEEAAKFIEYG-GS 146 (486)
T ss_pred EEECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEe-CCHHHHHHHHhhc-CC
Confidence 99985 443 567889999999999999999999999999999999999997533332 4888888888665 69
Q ss_pred EEEeecCCCCCccEEEECChhH-----HHHHHHHHHHHH---HhcCC--CCcEEEecccCCCeeEEEEEEEeccccEEEE
Q 041518 190 ILIKPTHGGGGKGMRIVQSPND-----FVDSFLGAQREA---AASFG--INTILLEKYITQPRHIEVQIFGDKYGKVLHL 259 (765)
Q Consensus 190 vVVKP~~g~Gg~Gv~~v~s~~e-----l~~a~~~~~~ea---~~~fg--~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l 259 (765)
+||||..++||+||+++++.++ +.+++..+..+. ...|+ +..+||||||+ |.|++|+++.|++ .++.+
T Consensus 147 vVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~-G~E~SV~al~dG~-~~~~l 224 (486)
T PRK05784 147 VAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD-GVEYTLQVLTDGE-TVIPL 224 (486)
T ss_pred EEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC-CeEEEEEEEECCC-eEEEe
Confidence 9999999999999999999873 445554333332 12344 36899999999 5799999998764 33333
Q ss_pred -Eeeeccccccc------eeeeeecC----CCCCCHHHHHHHHHHHHHHHHHc----CC--CceeEEEEEEE-CCCCcEE
Q 041518 260 -YERDCSVQRRH------QKIIEEAP----APNVTHDFRALLGQAAVSAAKAV----SY--HNAGTVEFIVD-TVSDQFY 321 (765)
Q Consensus 260 -~~r~~s~~~~~------~k~~e~~P----a~~l~~~~~~~l~~~a~~i~~al----g~--~G~~~vEf~~~-~~~g~~~ 321 (765)
..+|....-.+ ......+| .|.++++..+++.+++...++++ |+ +|+.|+||+++ + +| |+
T Consensus 225 ~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~-~G-P~ 302 (486)
T PRK05784 225 PLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTEL-WG-PT 302 (486)
T ss_pred eeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecC-CC-cE
Confidence 22221100000 00111245 56677877777777777766555 33 59999999999 5 54 99
Q ss_pred EEEecccCCccccccce---ecCCCHHHHHHHHHcCCCCCCCCCCcccc-eEEE----EEEecccCCCCCCCCCCcceeE
Q 041518 322 FMEMNTRLQVEHPVTEM---IVDQDLVEWQIRVANGEPLPLSQSEVPLL-GHAF----EARIYAENVPKGFLPATGVLHH 393 (765)
Q Consensus 322 ~iEiN~R~~~~~~~~e~---~tGvDl~~~~i~~a~G~~l~~~~~~~~~~-g~ai----~~ri~ae~p~~~f~p~~G~i~~ 393 (765)
+||+|+|++ .|.++. .++.||++++++++.|+.-.. ++.++ +.++ .+..||+. ..|..|....
T Consensus 303 vIE~n~R~G--dpe~~~llp~l~~dl~~~~~~~~~g~l~~~---~~~~~~~~~~~vv~as~gYp~~----~~~~~g~~i~ 373 (486)
T PRK05784 303 VIEYYSRFG--DPEASNIIPRIESDFGELFELAATGKLSKA---KIKFNEEPSVVKAIAPLGYPLS----RDLASGRRIV 373 (486)
T ss_pred EEEEecccC--CchHHHHHHhccCCHHHHHHHHHcCCCCCC---CeeecCCceEEEEECCCCCCCc----ccCCCCCEEE
Confidence 999999996 444432 246699999999999973221 23332 2232 33333322 1244564443
Q ss_pred EeeC-CCCCCcEEEEecccCCCeeCCccCCcceEEEEEee---EEeccccCHHHHHH
Q 041518 394 YHPV-PVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGAK---TVAGVPTNINFLQK 446 (765)
Q Consensus 394 ~~~p-~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g~---~i~g~~tn~~~l~~ 446 (765)
.... ...++ +.+.. .|... .-+++++.|. .+.+...+++-.++
T Consensus 374 ~~~~~~~~~~-~~v~~---ag~~~------~~~~~~t~ggRvl~v~~~~~~l~~A~~ 420 (486)
T PRK05784 374 VDLDKIKEEG-CLVFF---GSVEL------EGGQLITKGSRALEIVAIGKDFEEAYE 420 (486)
T ss_pred CCccccccCC-CEEEE---CCcee------eCCEEEEcCCCeEEEEEEeCCHHHHHH
Confidence 2211 00122 22222 22110 1367888883 77788888877663
No 42
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-31 Score=282.17 Aligned_cols=313 Identities=19% Similarity=0.264 Sum_probs=264.5
Q ss_pred EEEEEcCc-HHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 39 KILIANRG-EIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 39 kILI~g~G-~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
+|..++.+ ..+..+.+++|+.|++++.+.+++.+......+||..|..+ ...+.+..+++++++|+|+|..
T Consensus 7 ~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP--------~~~E~v~~Ii~~E~~Dailp~~ 78 (400)
T COG0458 7 VIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEP--------ITKEPVEKIIEKERPDAILPTL 78 (400)
T ss_pred eeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeeec--------CcHHHHHHHHHhcCcceeeccc
Confidence 45555433 45677899999999999999999998888889999988653 5678999999999999999997
Q ss_pred Cccc-ccHHH----HHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEE
Q 041518 118 GFLS-ESADF----AQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILI 192 (765)
Q Consensus 118 g~ls-E~~~~----a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVV 192 (765)
|... .+... ...+++.|++++|.++++++++.||.++|++|++.|+|+| ... ..+.+++.+..+.+||||||
T Consensus 79 ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~--~~~~~e~~~~~~~ig~PvIV 155 (400)
T COG0458 79 GGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRI--AHSVEEADEIADEIGYPVIV 155 (400)
T ss_pred CCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccc--cccHHHHhhhHhhcCCCEEE
Confidence 6432 22211 1235677999999999999999999999999999999999 333 34889999999999999999
Q ss_pred eecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeee-c-cccccc
Q 041518 193 KPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERD-C-SVQRRH 270 (765)
Q Consensus 193 KP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~-~-s~~~~~ 270 (765)
||+.+.||.|..+++|.+||.+..+.....+. -.++++||+|.|..|+++.+..|.+++++.+...+ + +.....
T Consensus 156 rP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~----~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvht 231 (400)
T COG0458 156 KPSFGLGGSGGGIAYNEEELEEIIEEGLRASP----VEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHT 231 (400)
T ss_pred ecCcCCCCCceeEEeCHHHHHHHHHhccccCc----cccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCccccccccc
Confidence 99999999999999999999998887765432 36999999999999999999999999998886543 2 222223
Q ss_pred eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHH
Q 041518 271 QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIR 350 (765)
Q Consensus 271 ~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~ 350 (765)
...+..+|++.+++...+.++..+.++++.+|..|..++||.+++.++++||||||||++....+.+.+||..+......
T Consensus 232 gdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaak 311 (400)
T COG0458 232 GDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAK 311 (400)
T ss_pred cceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHHH
Confidence 56777899999999999999999999999999999999999999855799999999999999999999999999999999
Q ss_pred HHcCCCCCCCCCCccc
Q 041518 351 VANGEPLPLSQSEVPL 366 (765)
Q Consensus 351 ~a~G~~l~~~~~~~~~ 366 (765)
+|.|..++....++.-
T Consensus 312 la~g~~l~Ei~n~it~ 327 (400)
T COG0458 312 LAVGYTLDEIRNDITG 327 (400)
T ss_pred hhcccCchhhcCcccc
Confidence 9999988755555543
No 43
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=3e-31 Score=294.49 Aligned_cols=275 Identities=17% Similarity=0.213 Sum_probs=209.9
Q ss_pred CCCCHHHHHHHHHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCC
Q 041518 94 SYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNE 173 (765)
Q Consensus 94 syld~~~Il~~a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~ 173 (765)
++.|.+.|+++|+++++|+|+++.+... ...+++.+++.|++++||+++++++++||..+|++|+++|||+|++....
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l-~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~- 89 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPL-IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVE- 89 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHH-HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEEC-
Confidence 4588999999999999999999874311 13567889999999999999999999999999999999999999987654
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEecc
Q 041518 174 QDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKY 253 (765)
Q Consensus 174 ~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~ 253 (765)
+.+++.++++++|||+||||..++||+||++++|.+|+.++++.+.... .++.+|||+||+| +|+++.++.+++
T Consensus 90 -~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~----~~~~vlvEe~i~G-~E~sv~~~~~g~ 163 (379)
T PRK13790 90 -RKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE----EEGTVVFETFLEG-EEFSLMTFVNGD 163 (379)
T ss_pred -CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC----CCCeEEEEEcccC-ceEEEEEEeeCC
Confidence 8889999999999999999999999999999999999999998865311 1358999999995 899999998765
Q ss_pred ccEEEE--Eeeec-cccc---c-c-eeeeeecCCCCCCHHHHHHH-HHHHHHHHHHc---CC--CceeEEEEEEECCCCc
Q 041518 254 GKVLHL--YERDC-SVQR---R-H-QKIIEEAPAPNVTHDFRALL-GQAAVSAAKAV---SY--HNAGTVEFIVDTVSDQ 319 (765)
Q Consensus 254 g~vv~l--~~r~~-s~~~---~-~-~k~~e~~Pa~~l~~~~~~~l-~~~a~~i~~al---g~--~G~~~vEf~~~~~~g~ 319 (765)
. .+.+ ..++. .... . + ......+|.+.++++..+++ .+++.+++++| |+ .|+.++||++++ + +
T Consensus 164 ~-~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~-g 240 (379)
T PRK13790 164 L-AVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-D-G 240 (379)
T ss_pred E-EEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-C-C
Confidence 2 2221 11110 0000 0 0 11223357767788776655 56666666666 54 599999999995 4 4
Q ss_pred EEEEEecccCCccccccce---ecCCCHHHHHHHHHcCCCCCCCCCCcccceEEEEEEecccCCC
Q 041518 320 FYFMEMNTRLQVEHPVTEM---IVDQDLVEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAENVP 381 (765)
Q Consensus 320 ~~~iEiN~R~~~~~~~~e~---~tGvDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~ 381 (765)
+|+||+|+|++. |.++. .+|+||++++++.+.|.++++...+....|-.+.++.||.++.
T Consensus 241 ~~viEiN~R~G~--pe~~~~~~~~~~Dl~~~~~~~~~g~~~~~~~~~~~~~~v~~~s~gyp~~~~ 303 (379)
T PRK13790 241 PKVIEFNARFGD--PEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYE 303 (379)
T ss_pred eEEEEEEcccCC--CcceeeecccCCCHHHHHHHHHcCCCCceeEcCCCEEEEEEccCCCCCCCC
Confidence 999999999963 44443 4789999999999999887655444444555556666766543
No 44
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=100.00 E-value=4.7e-31 Score=282.52 Aligned_cols=293 Identities=22% Similarity=0.284 Sum_probs=233.9
Q ss_pred EEEcCc-HHHHHHHHHHHHC-CCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCC
Q 041518 41 LIANRG-EIAYRIMRTAKRL-GIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYG 118 (765)
Q Consensus 41 LI~g~G-~~a~~iiraar~~-Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g 118 (765)
+..|+| ..+..+++.+|+. .+++ +.++.++..+...+||+++..|. ..++|. +.++++|+++++|+++|++.
T Consensus 2 iwfn~~~s~~~~~i~~lr~~~~~~i--~~sh~~~~~~~~~~aD~~~~eP~--~~~~yv--~~~l~~C~~~~Idv~~P~~~ 75 (329)
T PF15632_consen 2 IWFNRGFSSQRDIIRSLRANRDFTI--IASHRDPRAPILYAADEAYLEPA--DGEEYV--DWCLDFCKEHGIDVFVPGRN 75 (329)
T ss_pred EEecCCCccHHHHHHHHHcCCCeEE--EEEeCCCCchHHhcCceeeecCC--CHHHHH--HHHHHHHHHhCCeEEEcCcc
Confidence 455655 4578889999885 4444 44666777789999999987544 445565 88999999999999999973
Q ss_pred cccccHHHHHHHHHCCCcEEC-CcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCc---EEEee
Q 041518 119 FLSESADFAQLCGDNGLTFIG-PPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYP---ILIKP 194 (765)
Q Consensus 119 ~lsE~~~~a~~~~~~Gl~~~G-p~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~P---vVVKP 194 (765)
... .....+.+++.|+.+.- ++.++++++.||..+.+.|++.|||+|+++.+. +.+++..+.+++++| ++|||
T Consensus 76 ~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~--t~~el~~a~~~l~~~~~~~CvKP 152 (329)
T PF15632_consen 76 REL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVR--TADELKAAYEELRFPGQPLCVKP 152 (329)
T ss_pred HHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeC--CHHHHHHHHHhcCCCCceEEEec
Confidence 211 24556788999999887 789999999999999999999999999998765 999999999998887 99999
Q ss_pred cCCCCCccEEEEC-ChhHHHHHHH---------HHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeec
Q 041518 195 THGGGGKGMRIVQ-SPNDFVDSFL---------GAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDC 264 (765)
Q Consensus 195 ~~g~Gg~Gv~~v~-s~~el~~a~~---------~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~ 264 (765)
+.|.||+|.++++ +.+++...++ .+.+.-..+-...++||++|++ |.||+|+++++. |+++....|..
T Consensus 153 ~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~-G~EySVD~l~~~-G~viaaV~R~K 230 (329)
T PF15632_consen 153 AVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLP-GPEYSVDCLADE-GRVIAAVPRRK 230 (329)
T ss_pred ccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCC-CCeEEEEEEecC-CEEEEEEEEEe
Confidence 9999999999998 5666655443 1111111111247999999999 579999999986 78887766543
Q ss_pred cccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCH
Q 041518 265 SVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDL 344 (765)
Q Consensus 265 s~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl 344 (765)
. ...|.+ +..+++.+.+.++++.+|+.|+++|||+.|. +|++++||||||++++-+.+. .+|+||
T Consensus 231 ~--G~~q~l-----------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~-~g~p~LLEINpR~sGGi~~s~-~aGvNl 295 (329)
T PF15632_consen 231 L--GRRQVL-----------ENDEELIELARRLAEAFGLDGLFNIQFRYDE-DGNPKLLEINPRPSGGIGYSC-AAGVNL 295 (329)
T ss_pred c--CceeEE-----------EECHHHHHHHHHHHHHhCCCceEEEEEEEcC-CCCEEEEEeCCCCccchhhHh-hcCCCh
Confidence 3 222222 1236789999999999999999999999987 899999999999998888776 569999
Q ss_pred HHHHHHHHcCCCCCC
Q 041518 345 VEWQIRVANGEPLPL 359 (765)
Q Consensus 345 ~~~~i~~a~G~~l~~ 359 (765)
+.+.+..++|++.+.
T Consensus 296 p~la~~~~lG~~~~~ 310 (329)
T PF15632_consen 296 PYLAVKLALGEPIPP 310 (329)
T ss_pred HHHHHHHHcCCCCCC
Confidence 999999999998763
No 45
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=6.6e-31 Score=287.13 Aligned_cols=301 Identities=19% Similarity=0.208 Sum_probs=220.3
Q ss_pred CCCEEEEEcCc---------HHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHH
Q 041518 36 RIEKILIANRG---------EIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAI 106 (765)
Q Consensus 36 ~~kkILI~g~G---------~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~ 106 (765)
|++||.|+=+| ..|..+++++++.||+++.++.+.+............+.-+. ....++. +....+
T Consensus 2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~ 76 (333)
T PRK01966 2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELADDD-NDKEDLS----LLILPS 76 (333)
T ss_pred CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhccccc-ccccccc----hhcccc
Confidence 45688887666 237889999999999999998766521110000000000000 0001111 111111
Q ss_pred Hh--CCCEEEeC-CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCH--HHHHH
Q 041518 107 RT--GAQAIHPG-YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDI--DLMKS 181 (765)
Q Consensus 107 ~~--~~DaV~pg-~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~--~e~~~ 181 (765)
.. ++|.++|. +|...|+..+..+++..|++++|++..+..++.||..+|++++++|||+|++......+. ..+..
T Consensus 77 ~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~ 156 (333)
T PRK01966 77 GGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAE 156 (333)
T ss_pred ccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccccchhhHHH
Confidence 22 68999998 588899999999999999999999999999999999999999999999999876542221 23355
Q ss_pred HHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEe
Q 041518 182 EAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYE 261 (765)
Q Consensus 182 ~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~ 261 (765)
..+.++||+||||..|+||.||.+|++.+|+.++++.+... ++.++||+||+ |+|+++.++.+ ++.+..+.+
T Consensus 157 ~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~-G~E~~v~vl~~-~~~~~~~~e 228 (333)
T PRK01966 157 IEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIK-GREIECAVLGN-DPKASVPGE 228 (333)
T ss_pred HHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcC-CEEEEEEEECC-CCeEcccEE
Confidence 56789999999999999999999999999999999887642 57999999999 59999999986 344443333
Q ss_pred eecc--c---cccce--eeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCcc-c
Q 041518 262 RDCS--V---QRRHQ--KIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE-H 333 (765)
Q Consensus 262 r~~s--~---~~~~~--k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~-~ 333 (765)
..+. + ...+. ......|+ .++++..+++.+++.+++++||++|++++||++++ +|++||+|+|||++.. +
T Consensus 229 i~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g~~~vlEiNt~Pg~t~~ 306 (333)
T PRK01966 229 IVKPDDFYDYEAKYLDGSAELIIPA-DLSEELTEKIRELAIKAFKALGCSGLARVDFFLTE-DGEIYLNEINTMPGFTPI 306 (333)
T ss_pred EecCCceEcHHHccCCCCceEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CCCEEEEEeeCCCCCCcc
Confidence 3221 1 11111 12344688 79999999999999999999999999999999997 7889999999999832 2
Q ss_pred ---cccceecCCCHHHHHHHH
Q 041518 334 ---PVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 334 ---~~~e~~tGvDl~~~~i~~ 351 (765)
|.....+|+|+.++.-++
T Consensus 307 s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 307 SMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred cHHHHHHHHcCCCHHHHHHHH
Confidence 223345799887776554
No 46
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=1.6e-30 Score=279.48 Aligned_cols=272 Identities=19% Similarity=0.262 Sum_probs=208.8
Q ss_pred CEEEEEcCc---------HHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHh
Q 041518 38 EKILIANRG---------EIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRT 108 (765)
Q Consensus 38 kkILI~g~G---------~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~ 108 (765)
+||.|+-+| ..+..+.+++++.|++++.++.+... ++..+.+.
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~----------------------------~~~~l~~~ 55 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKE----------------------------LVAKLLEL 55 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchh----------------------------HHHHhhcc
Confidence 467666555 23788999999999998877532100 11223345
Q ss_pred CCCEEEeCC-CcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhC
Q 041518 109 GAQAIHPGY-GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIG 187 (765)
Q Consensus 109 ~~DaV~pg~-g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig 187 (765)
++|.++++. |...|+..++..++.+|+|++|++++++.++.||..+|++|+++|||+|++.... +. ....+.++
T Consensus 56 ~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~--~~---~~~~~~~~ 130 (296)
T PRK14569 56 KPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLT--DK---LVAEDEIS 130 (296)
T ss_pred CCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEc--hh---hhhHhhcC
Confidence 799999874 6677999999999999999999999999999999999999999999999986543 21 12356789
Q ss_pred CcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeee--cc
Q 041518 188 YPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERD--CS 265 (765)
Q Consensus 188 ~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~--~s 265 (765)
||+||||..|++|+|+.+|+|.+||..+++.+.. .+.+|||+||+ |+|+++.++.++....+.+...+ ..
T Consensus 131 ~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~-G~E~tv~vl~~~~~~~~~i~~~~~~~~ 202 (296)
T PRK14569 131 FPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVT-GKEITVAIVNDEVYSSVWIEPQNEFYD 202 (296)
T ss_pred CCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEcccc-cEEEEEEEECCcCcceEEEecCCCcCC
Confidence 9999999999999999999999999999987632 25899999999 59999999865432222221110 11
Q ss_pred ccc-cceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccc----cccceec
Q 041518 266 VQR-RHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEH----PVTEMIV 340 (765)
Q Consensus 266 ~~~-~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~----~~~e~~t 340 (765)
... ...+.....|+ .++++..+++.+.+.+++++||++|.++|||++++ +|++||+|||||++... |......
T Consensus 203 ~~~k~~~~~~~~~P~-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~g~~~vlEIN~~Pg~t~~s~~~~~~~~~ 280 (296)
T PRK14569 203 YESKYSGKSIYHSPS-GLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDD-RGNFYIMEINSSPGMTDNSLSPKSAAAE 280 (296)
T ss_pred hhhccCCCcEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-CCCEEEEEeeCCCCCCCcCHHHHHHHHc
Confidence 111 11234445688 68889999999999999999999999999999997 78899999999998322 3334457
Q ss_pred CCCHHHHHHHHH
Q 041518 341 DQDLVEWQIRVA 352 (765)
Q Consensus 341 GvDl~~~~i~~a 352 (765)
|+|+.++..++.
T Consensus 281 G~~~~~li~~ii 292 (296)
T PRK14569 281 GVDFDSFVKRII 292 (296)
T ss_pred CCCHHHHHHHHH
Confidence 999888876654
No 47
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.97 E-value=7.4e-30 Score=260.10 Aligned_cols=332 Identities=21% Similarity=0.308 Sum_probs=258.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
-+|||++|+||.+..++-.|.++|.++++|+...++ +..+.|+..+.++- +|.++|..+.+++++|.|+|-
T Consensus 12 a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~A--PAmqVAhrs~Vi~M-------lD~~al~avv~rekPd~IVpE 82 (394)
T COG0027 12 ATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANA--PAMQVAHRSYVIDM-------LDGDALRAVVEREKPDYIVPE 82 (394)
T ss_pred CeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCC--hhhhhhhheeeeec-------cCHHHHHHHHHhhCCCeeeeh
Confidence 468999999999999999999999999999765555 67778888887754 999999999999999999987
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHH-HHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeec
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIM-GAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPT 195 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l-~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~ 195 (765)
..... ......+++.|+.++ |+..+.+++.|+...|+++ +++|+|+.+|.... +.+++.+.++++||||++||.
T Consensus 83 iEAI~--td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~--s~~e~~~a~~~iGfPcvvKPv 157 (394)
T COG0027 83 IEAIA--TDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYRFAD--SLEELRAAVEKIGFPCVVKPV 157 (394)
T ss_pred hhhhh--HHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCccccccc--cHHHHHHHHHHcCCCeecccc
Confidence 64332 233455789999877 9999999999999999987 56899999987655 999999999999999999999
Q ss_pred CCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccc----cccce
Q 041518 196 HGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSV----QRRHQ 271 (765)
Q Consensus 196 ~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~----~~~~~ 271 (765)
.+++|+|-.+++++++++.+|+.+...++. +.+.++||+||+-.-|+++-.+...+|+-. + |.. |.+..
T Consensus 158 MSSSGkGqsvv~~~e~ve~AW~~A~~g~R~--~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~-F----c~PIGHrq~dgd 230 (394)
T COG0027 158 MSSSGKGQSVVRSPEDVEKAWEYAQQGGRG--GSGRVIVEEFVKFDFEITLLTVRAVDGTGS-F----CAPIGHRQEDGD 230 (394)
T ss_pred cccCCCCceeecCHHHHHHHHHHHHhcCCC--CCCcEEEEEEecceEEEEEEEEEEecCCCC-c----CCCcccccCCCC
Confidence 999999999999999999999999875543 358999999999544444444443333321 1 222 22222
Q ss_pred eeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHH
Q 041518 272 KIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 272 k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~ 351 (765)
..-..-|. .+++...++...+|.++.++||-.|.+.||+++. .++.||-|+.||+....-+|-..-+++-+++++|.
T Consensus 231 Y~ESWQP~-~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~--gDeV~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RA 307 (394)
T COG0027 231 YRESWQPQ-EMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEVIFSEVSPRPHDTGMVTLISQDLSEFALHVRA 307 (394)
T ss_pred hhcccCcc-ccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe--CCEEEEeecCCCCCCCceEEEEeccchHHHHHHHH
Confidence 22233577 7999999999999999999999999999999999 57899999999998655566555699999999999
Q ss_pred HcCCCCCCCCCCcccceEEEEEEecccCCCCCCCCC-CcceeEEeeCC
Q 041518 352 ANGEPLPLSQSEVPLLGHAFEARIYAENVPKGFLPA-TGVLHHYHPVP 398 (765)
Q Consensus 352 a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~-~G~i~~~~~p~ 398 (765)
.+|.|++ .++.-+.+...-|+++-.. ..|. .|.-..+..|.
T Consensus 308 iLGLPi~----~i~~~~P~AS~vI~~~~~~--~~~~f~~l~~AL~~p~ 349 (394)
T COG0027 308 ILGLPIP----EIRQISPAASAVILAQETS--QAPTFDGLAEALGVPD 349 (394)
T ss_pred HhCCCcc----ceeeecccccceeeccccc--cCCchhhHHHHhcCCC
Confidence 9999987 2333333333445544321 2222 44555555554
No 48
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.97 E-value=2.3e-30 Score=287.84 Aligned_cols=251 Identities=18% Similarity=0.223 Sum_probs=201.0
Q ss_pred HHHHHHHHHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHH
Q 041518 98 GSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDID 177 (765)
Q Consensus 98 ~~~Il~~a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~ 177 (765)
...+++..++.+..... -|++|+..++.+|+.+|++++||+++++.++.||..+|++++++|||+||++.....+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~---~fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~e 169 (493)
T PRK06524 93 HPETLEFIKRRGPGGKA---CFVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYD 169 (493)
T ss_pred CHHHHHHHHhhCCCCce---EEecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHH
Confidence 34556666666542221 278999999999999999999999999999999999999999999999999875445777
Q ss_pred HHHHHHHH--hCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEecccc
Q 041518 178 LMKSEAAK--IGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGK 255 (765)
Q Consensus 178 e~~~~~~~--ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~ 255 (765)
++.+.++. +|||+||||..|++|+|+++|++.+|++.+++.+. +++.++||+||. ++|++|+++.+.+|.
T Consensus 170 el~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~-------~~~~viVEe~I~-GrEitVev~vd~dG~ 241 (493)
T PRK06524 170 ELSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIV-------GQPEIKVMKRIR-NVEVCIEACVTRHGT 241 (493)
T ss_pred HHHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhc-------CCCCEEEEeccC-cEEEEEEEEEeCCCC
Confidence 77776665 99999999999999999999999999998776643 346899999998 699999999988887
Q ss_pred EEEEE------eeeccccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHc---CCCceeEEEEEEECCCCcEEEEEec
Q 041518 256 VLHLY------ERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAV---SYHNAGTVEFIVDTVSDQFYFMEMN 326 (765)
Q Consensus 256 vv~l~------~r~~s~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al---g~~G~~~vEf~~~~~~g~~~~iEiN 326 (765)
++... .+++...+......+..|+ .+++++.+++.++|.++.++| ||.|+++|||+++.++|++||+|||
T Consensus 242 Vv~~~~~e~vg~~Ei~~yr~G~~~~~i~PA-~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 242 VIGPAMTSLVGYPELTPYRGGWCGNDIWPG-ALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred EEeccccccccceEEEEccCCeEEEEEccC-CCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 65421 1122111222222356788 799999999999999999998 8999999999999535789999999
Q ss_pred ccCCccccccceec--CC--CHHHHHHHHHcCCCCCCC
Q 041518 327 TRLQVEHPVTEMIV--DQ--DLVEWQIRVANGEPLPLS 360 (765)
Q Consensus 327 ~R~~~~~~~~e~~t--Gv--Dl~~~~i~~a~G~~l~~~ 360 (765)
||++++++++++++ |. ++...+++..+|.|..+.
T Consensus 321 PR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~~~ 358 (493)
T PRK06524 321 PRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYELD 358 (493)
T ss_pred CCcccccccchhhhccCCChhHHHHHHHHHhCCCceec
Confidence 99999999988854 34 455566667788877653
No 49
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.97 E-value=1.2e-29 Score=273.90 Aligned_cols=277 Identities=21% Similarity=0.318 Sum_probs=214.7
Q ss_pred CCCCEEEEEcCc---------HHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHH
Q 041518 35 QRIEKILIANRG---------EIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAA 105 (765)
Q Consensus 35 ~~~kkILI~g~G---------~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a 105 (765)
+|.++|.|+-+| ..+..++++++++|++++.++.+.+ +++.+
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~-----------------------------~~~~~ 52 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------IAAQL 52 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc-----------------------------hHHHh
Confidence 455678777655 2368899999999999988764311 23334
Q ss_pred HHhCCCEEEeCC-CcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHH
Q 041518 106 IRTGAQAIHPGY-GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAA 184 (765)
Q Consensus 106 ~~~~~DaV~pg~-g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~ 184 (765)
+..++|.|++.+ |..+|+..++..++..|++++|+++.++.++.||..++++++++|||+|++.... +.+++..+++
T Consensus 53 ~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~--~~~~~~~~~~ 130 (304)
T PRK01372 53 KELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLT--REEDLLAAID 130 (304)
T ss_pred ccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEe--CcchHHHHHh
Confidence 456899999874 4456888889999999999999999999999999999999999999999998765 7777788888
Q ss_pred HhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeee-
Q 041518 185 KIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERD- 263 (765)
Q Consensus 185 ~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~- 263 (765)
.++||+||||..|+||+|+.++++.+|+.++++.... + ...+|+|+||+ |+|+++.++.+....++.+....
T Consensus 131 ~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~-G~E~~v~vi~~~~~~~~~~~~~~~ 203 (304)
T PRK01372 131 KLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK-----Y-DDEVLVEKYIK-GRELTVAVLGGKALPVIEIVPAGE 203 (304)
T ss_pred hcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcccC-CEEEEEEEECCCccceEEEEecCC
Confidence 9999999999999999999999999999998877642 2 46899999999 69999999876432222221100
Q ss_pred -ccccccc--eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCcc-c---ccc
Q 041518 264 -CSVQRRH--QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE-H---PVT 336 (765)
Q Consensus 264 -~s~~~~~--~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~-~---~~~ 336 (765)
+.....+ .......|+ .++++..++|.+++.++++++|++|++++||++++ +|++||||+|+|++.. + +..
T Consensus 204 ~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~-~g~~~viEvN~~p~~~~~~~~~~~ 281 (304)
T PRK01372 204 FYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLDE-DGKPYLLEVNTQPGMTSHSLVPMA 281 (304)
T ss_pred EEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CCCEEEEEecCCCCCCcccHHHHH
Confidence 0111111 112334566 68899999999999999999999999999999997 7899999999999732 2 222
Q ss_pred ceecCCCHHHHHHHH
Q 041518 337 EMIVDQDLVEWQIRV 351 (765)
Q Consensus 337 e~~tGvDl~~~~i~~ 351 (765)
....|+|+.+++..+
T Consensus 282 ~~~~g~~~~~~~~~i 296 (304)
T PRK01372 282 ARAAGISFSELVDRI 296 (304)
T ss_pred HHHcCCCHHHHHHHH
Confidence 234598877766554
No 50
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.97 E-value=4.9e-29 Score=263.59 Aligned_cols=310 Identities=23% Similarity=0.327 Sum_probs=255.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
|++|.|+|+|..+.+++.++++||+++++++ ++++++..+.||..+.. .|.|.+++.+++.+ +|+|-
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLd--p~~~~PA~~va~~~i~~-------~~dD~~al~ela~~--~DViT-- 67 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLD--PDADAPAAQVADRVIVA-------AYDDPEALRELAAK--CDVIT-- 67 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEec--CCCCCchhhcccceeec-------CCCCHHHHHHHHhh--CCEEE--
Confidence 4799999999999999999999999998875 55666899999988753 57899999999954 67775
Q ss_pred CCccccc--HHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEee
Q 041518 117 YGFLSES--ADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKP 194 (765)
Q Consensus 117 ~g~lsE~--~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP 194 (765)
|. .|+ ....+.+... .++ -|+++++++..||...|++++++|+|+|||.... +.+++..+++++|+|.|+|.
T Consensus 68 ~E--fE~V~~~aL~~l~~~-~~v-~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~--~~~el~~~~~~~g~p~VlKt 141 (375)
T COG0026 68 YE--FENVPAEALEKLAAS-VKV-FPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVD--SAEELDAAAADLGFPAVLKT 141 (375)
T ss_pred Ee--eccCCHHHHHHHHhh-cCc-CCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeC--CHHHHHHHHHHcCCceEEEe
Confidence 22 355 3344445554 333 4899999999999999999999999999998765 89999999999999999999
Q ss_pred cCCC-CCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceee
Q 041518 195 THGG-GGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKI 273 (765)
Q Consensus 195 ~~g~-Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~ 273 (765)
+.|| -|||.+++++.+++......... .+..++|+||+-.+|+++-+.++.+|++..+-. --.+++...-.
T Consensus 142 r~gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~-~eN~h~~gIl~ 213 (375)
T COG0026 142 RRGGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPV-AENVHRNGILR 213 (375)
T ss_pred ccccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEEecc-cceeeecCEEE
Confidence 9988 49999999999998875554432 234499999998899999999888888776521 11344444445
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHc
Q 041518 274 IEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVAN 353 (765)
Q Consensus 274 ~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~ 353 (765)
...+|+ .+++...++..+++.++++.|+|.|++.|||++++ +|++++.|+.||+..+...|...+.++-++.++|..+
T Consensus 214 ~siaPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~ 291 (375)
T COG0026 214 TSIAPA-RIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTP-DGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVL 291 (375)
T ss_pred EEEecC-cCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEEC-CCcEEEeeccCCCCCccccchhhccccHHHHHHHHHh
Confidence 566899 89999999999999999999999999999999998 8899999999999988888888899999999999999
Q ss_pred CCCCCCCCCCcccceEEEEEEecccC
Q 041518 354 GEPLPLSQSEVPLLGHAFEARIYAEN 379 (765)
Q Consensus 354 G~~l~~~~~~~~~~g~ai~~ri~ae~ 379 (765)
|.||+. ......++..-+.-.+
T Consensus 292 glPLg~----~~~~~p~vMvNlLG~~ 313 (375)
T COG0026 292 GLPLGS----TTLLSPSVMVNLLGDD 313 (375)
T ss_pred CCCCCC----ccccCceEEEEecCCC
Confidence 999983 3445666666665443
No 51
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.97 E-value=2.4e-29 Score=276.33 Aligned_cols=304 Identities=13% Similarity=0.169 Sum_probs=215.5
Q ss_pred CEEEEEcCc---------HHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCC----CHHHH--H
Q 041518 38 EKILIANRG---------EIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL----NGSSI--V 102 (765)
Q Consensus 38 kkILI~g~G---------~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syl----d~~~I--l 102 (765)
.||+|+-+| ..|..+++++++.||+++.++.+.+......+..+..+..+.......+. ....+ .
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEP 81 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecccccccccccccccccccccccccccccccc
Confidence 467777665 22788999999999999988866543211111111111100000000000 00000 0
Q ss_pred HHHHHhCCCEEEeC-CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCC----CCHH
Q 041518 103 DAAIRTGAQAIHPG-YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNE----QDID 177 (765)
Q Consensus 103 ~~a~~~~~DaV~pg-~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~----~s~~ 177 (765)
......++|.++++ +|...|+..+...++.+|+|++|+++.++.++.||..+|++|+++|||+|+++.... .+.+
T Consensus 82 ~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~ 161 (347)
T PRK14572 82 ADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPR 161 (347)
T ss_pred ccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEccccccChH
Confidence 11123468999988 577889999999999999999999999999999999999999999999999876431 1334
Q ss_pred HHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEecc-c--
Q 041518 178 LMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKY-G-- 254 (765)
Q Consensus 178 e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~-g-- 254 (765)
++.+..++++||+||||..|++|+||.+|+|.+||..+++.+... ++.+|||+||+ |+|+++.++.+.. |
T Consensus 162 ~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~-G~E~sv~vi~~~~~g~~ 234 (347)
T PRK14572 162 KTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLS-GTEVSCGVLERYRGGKR 234 (347)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCcc-cEEEEEEEEeCccCCCC
Confidence 444556789999999999999999999999999999999887532 56899999999 5999999997522 2
Q ss_pred cEEEEEeeeccc-------cccc--eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEe
Q 041518 255 KVLHLYERDCSV-------QRRH--QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEM 325 (765)
Q Consensus 255 ~vv~l~~r~~s~-------~~~~--~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEi 325 (765)
..+.+...+... ...| .......|+ .+++++.+++.+.+.+++++||++|++++||+++ +|++|++|+
T Consensus 235 ~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~--~~~~~vlEi 311 (347)
T PRK14572 235 NPIALPATEIVPGGEFFDFESKYKQGGSEEITPA-RISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV--DGEPHILET 311 (347)
T ss_pred CceecccEEEecCCCccCHHHccCCCCeEEEECC-CCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE--CCcEEEEee
Confidence 223332222111 1111 122344688 6899999999999999999999999999999998 578999999
Q ss_pred cccCCcc-ccc---cceecCCCHHHHHHHH
Q 041518 326 NTRLQVE-HPV---TEMIVDQDLVEWQIRV 351 (765)
Q Consensus 326 N~R~~~~-~~~---~e~~tGvDl~~~~i~~ 351 (765)
|++++.. +.+ .-...|+++.++.-++
T Consensus 312 Nt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 312 NTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred eCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999832 222 2235688877766554
No 52
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.97 E-value=2.1e-29 Score=276.39 Aligned_cols=293 Identities=17% Similarity=0.192 Sum_probs=213.5
Q ss_pred CCEEEEEcCc---------HHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccE-----------EEEcCCCCcCcCCC
Q 041518 37 IEKILIANRG---------EIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADE-----------AIRIGPPPARLSYL 96 (765)
Q Consensus 37 ~kkILI~g~G---------~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~-----------~~~i~~~~~~~syl 96 (765)
++||.|+-+| ..|..+++++++.||+++.++-+.+... . ..+. .+.+.+..
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~--~-~~~~~~~~~~~~~~~~~~~~~~~------ 73 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVW--K-LCDGPCAEWENGSCRPAVLSPDR------ 73 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcE--E-eCCccccccccccccceeecccc------
Confidence 4578777666 2378899999999999999987654211 0 0110 00111100
Q ss_pred CHHHHHHH----HHHhCCCEEEeC-CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCcccc
Q 041518 97 NGSSIVDA----AIRTGAQAIHPG-YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHG 171 (765)
Q Consensus 97 d~~~Il~~----a~~~~~DaV~pg-~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~ 171 (765)
+...+... .+..++|.++|. +|...|+..+..+++..|+|++|+++.+..++.||..+|++++++|||+|+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~ 153 (343)
T PRK14568 74 KVHGLLVLEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTV 153 (343)
T ss_pred ccccccccCccccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEE
Confidence 00000000 123578999998 6888899999999999999999999999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEe
Q 041518 172 NEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGD 251 (765)
Q Consensus 172 ~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d 251 (765)
. +.++.. .+.++||+||||..+++|+|+.+|+|.+||.++++.+.+. ++.+|||+||+ |+|+++.++++
T Consensus 154 ~--~~~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~-G~E~sv~vl~~ 222 (343)
T PRK14568 154 T--ADERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVV-GSEVGCAVLGN 222 (343)
T ss_pred E--CCchhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcC-CEEEEEEEEcC
Confidence 4 333321 3578999999999999999999999999999999877542 47899999999 59999999976
Q ss_pred ccccEEE-EEeeec--ccccccee---------eeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCc
Q 041518 252 KYGKVLH-LYERDC--SVQRRHQK---------IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQ 319 (765)
Q Consensus 252 ~~g~vv~-l~~r~~--s~~~~~~k---------~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~ 319 (765)
+.+..+. +.+... .+.+.+++ .....|+ .++++..+++.+++.+++++||++|++++||++++ +|+
T Consensus 223 ~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~g~ 300 (343)
T PRK14568 223 GADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPA-DISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-DGT 300 (343)
T ss_pred CCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CCC
Confidence 5422221 111100 11121211 1234688 79999999999999999999999999999999997 789
Q ss_pred EEEEEecccCCccc----cccceecCCCHHHHHHHH
Q 041518 320 FYFMEMNTRLQVEH----PVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 320 ~~~iEiN~R~~~~~----~~~e~~tGvDl~~~~i~~ 351 (765)
+||+|||++++... |..-...|+++.++.-++
T Consensus 301 ~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~l 336 (343)
T PRK14568 301 VVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDRL 336 (343)
T ss_pred EEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999998432 112235688866655443
No 53
>PRK06849 hypothetical protein; Provisional
Probab=99.97 E-value=5.7e-30 Score=285.95 Aligned_cols=277 Identities=12% Similarity=0.059 Sum_probs=207.7
Q ss_pred CCEEEEEcCcH-HHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 37 IEKILIANRGE-IAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 37 ~kkILI~g~G~-~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
.++|||+|.+. .++.++|++++.|+++++++++++..+.+++++|+++.++... .+.....+.|+++++++++|+|+|
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~-~d~~~~~~~L~~i~~~~~id~vIP 82 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPR-WDPDAYIQALLSIVQRENIDLLIP 82 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCC-CCHHHHHHHHHHHHHHcCCCEEEE
Confidence 47999999775 7999999999999999999988776667788999998775321 111123589999999999999999
Q ss_pred CCCcccccHHHHHHHH--HCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHh-CCcEEE
Q 041518 116 GYGFLSESADFAQLCG--DNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKI-GYPILI 192 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~--~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~i-g~PvVV 192 (765)
+.+.. ..++...+ ..++.+++++++.++.+.||..++++++++|||+|+++... +.+++.++..+. +||+|+
T Consensus 83 ~~e~~---~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~--~~~~l~~~~~~~~~~P~vl 157 (389)
T PRK06849 83 TCEEV---FYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLIT--DPEAIRNFMFKTPHTPYVL 157 (389)
T ss_pred CChHH---HhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeC--CHHHHHHHhhcCCCCcEEE
Confidence 97532 22222222 23577889999999999999999999999999999988755 888888877776 899999
Q ss_pred eecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeecccccccee
Q 041518 193 KPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQK 272 (765)
Q Consensus 193 KP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k 272 (765)
||..|+||+|+.++.+.+++... .. ..+.++++||||+| .++++..+.. +|+++....+.........-
T Consensus 158 KP~~~~~~~~v~~~~~~~~l~~~----~~-----~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v~~~~~~~~~~~~~~~~ 226 (389)
T PRK06849 158 KPIYSRFVRRVDLLPKEAALKEL----PI-----SKDNPWVMQEFIQG-KEYCSYSIVR-SGELRAHSCYKPEYCAGSGA 226 (389)
T ss_pred EeCcccCCCeEEEecCHHHhccc----cc-----CCCCCeEEEEEecC-CeEEEEEEEE-CCEEEEEEEeeccccCCCCc
Confidence 99999999999999885443321 10 11357999999995 5777776654 46666543221100000000
Q ss_pred eeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccc
Q 041518 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTE 337 (765)
Q Consensus 273 ~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e 337 (765)
.....|. ..++|.+.+.++++++||+|.+++||++++ +|++|+||||||++++.+++.
T Consensus 227 ~~~~~~~------~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 227 QIAFQPI------NHPRIEEFVTHFVKELNYTGQISFDFIETE-NGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred eeEeEEC------CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CCCEEEEEecCCCCceeEEcC
Confidence 0111121 236899999999999999999999999996 889999999999997776654
No 54
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.97 E-value=3.3e-28 Score=260.69 Aligned_cols=366 Identities=17% Similarity=0.228 Sum_probs=264.3
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCC-CCHHHHHHHHHHhCCCEEEeCC
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSY-LNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~sy-ld~~~Il~~a~~~~~DaV~pg~ 117 (765)
||||+|+|.--..|+.++.+.+....+.....|+. ... +.+.+.. +. .|.+.|+++|++.++|.+++|.
T Consensus 2 kVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G---~a~--~~~~~~~-----~~~~~~~~lv~fA~~~~idl~vVGP 71 (428)
T COG0151 2 KVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPG---TAL--EAYLVNI-----EIDTDHEALVAFAKEKNVDLVVVGP 71 (428)
T ss_pred eEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCc---cch--hhhhccC-----ccccCHHHHHHHHHHcCCCEEEECC
Confidence 89999988444446777777664444433333442 111 1222211 12 5789999999999999999996
Q ss_pred Cc-ccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecC
Q 041518 118 GF-LSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTH 196 (765)
Q Consensus 118 g~-lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~ 196 (765)
.. |. ..+.+.+++.||+.+||+.+++++-++|..+|++|+++|||++.+.... +.+++.+++++.|.|++|||..
T Consensus 72 E~pL~--~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~--~~e~a~ayi~~~g~piVVKadG 147 (428)
T COG0151 72 EAPLV--AGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFT--DPEEAKAYIDEKGAPIVVKADG 147 (428)
T ss_pred cHHHh--hhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccC--CHHHHHHHHHHcCCCEEEeccc
Confidence 32 22 4567999999999999999999999999999999999999998887665 9999999999999999999999
Q ss_pred CCCCccEEEECChhHHHHHHHHHHHHHHhcCCC--CcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeee
Q 041518 197 GGGGKGMRIVQSPNDFVDSFLGAQREAAASFGI--NTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKII 274 (765)
Q Consensus 197 g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~--~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~ 274 (765)
-.+||||.++.+.+|..++++.+... ..||+ ..++||||++ |.|++++++.|++ +++.+ ...++|.+..
T Consensus 148 LaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~-GeE~S~~a~~DG~-~v~p~-----p~aQDhKra~ 218 (428)
T COG0151 148 LAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLD-GEEFSLQAFVDGK-TVIPM-----PTAQDHKRAY 218 (428)
T ss_pred ccCCCCeEEcCCHHHHHHHHHHHHhh--ccccCCCCcEEEEeccc-ceEEEEEEEEcCC-eEEEC-----cccccccccc
Confidence 99999999999999999998887753 34543 4599999999 6899999999986 55554 3445555554
Q ss_pred ee------------cCCCCCCHHHHHHHH-HHHHHHHHHc-----CCCceeEEEEEEECCCCcEEEEEecccCCcccccc
Q 041518 275 EE------------APAPNVTHDFRALLG-QAAVSAAKAV-----SYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVT 336 (765)
Q Consensus 275 e~------------~Pa~~l~~~~~~~l~-~~a~~i~~al-----g~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~ 336 (765)
+. +|+|.++++..+++. ++....++.+ .|+|+....|++++ +| |++||.|.|+ ++|-+
T Consensus 219 dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~-~G-PkViEfN~RF--GDPEt 294 (428)
T COG0151 219 DGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTA-DG-PKVIEFNARF--GDPET 294 (428)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcC-CC-cEEEEEeccc--CChhH
Confidence 43 689999998777766 5555555543 46699999999997 66 9999999999 67777
Q ss_pred cee---cCCCHHHHHHHHHcCCCCC--CCCCCc-ccceEEEEEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEE-ec
Q 041518 337 EMI---VDQDLVEWQIRVANGEPLP--LSQSEV-PLLGHAFEARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVE-TG 409 (765)
Q Consensus 337 e~~---tGvDl~~~~i~~a~G~~l~--~~~~~~-~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~-~~ 409 (765)
+.+ .--||++..+.++.|..-. ....+. ..-+..++++.||++|. .|............+ +.+. .+
T Consensus 295 q~vL~~l~sdl~~~~~a~~~g~L~~~~~~~~~~~a~v~vvlA~~GYP~~~~------kG~~I~~~~~~~~~~-~~vf~Ag 367 (428)
T COG0151 295 QVVLPLLESDLVELLLAAVDGKLDEVEILFWDKGAAVGVVLAAEGYPGDPE------KGDVITGDEEAEEEG-AKVFHAG 367 (428)
T ss_pred HHHHHhccccHHHHHHHHHhCCccccchhhccCCceEEEEEecCCCCCCCC------CCCEEecChhhcccC-cEEEEee
Confidence 754 4779999999999995432 111111 22355667788888764 564444332111112 2221 11
Q ss_pred ccCCCeeCCccCCcceEEEEEe-e--EEeccccCHHHHHHH
Q 041518 410 VEQGDTVSMHYDPMIANLWYGA-K--TVAGVPTNINFLQKL 447 (765)
Q Consensus 410 v~~G~~v~~~~d~~~~~~i~~g-~--~i~g~~tn~~~l~~~ 447 (765)
++.- .-+++++.| + .+.|...|++-.++.
T Consensus 368 v~~~---------~~~~lvt~GgRvL~v~~~g~t~~eA~~~ 399 (428)
T COG0151 368 VKLD---------DGGQLVTSGGRVLAVVGTGDTLEEAQEK 399 (428)
T ss_pred Eecc---------CCceEEecCCeEEEEEecCCCHHHHHHH
Confidence 1110 123577777 3 788888888766554
No 55
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.97 E-value=5.2e-29 Score=274.03 Aligned_cols=306 Identities=17% Similarity=0.174 Sum_probs=217.1
Q ss_pred CCCEEEEEcCcH---------HHHHHHHHH-HHCCCeEEEEecCCC-CCCcccccccEEEEcCCCCcCcCCCC------H
Q 041518 36 RIEKILIANRGE---------IAYRIMRTA-KRLGIRTVAVYSDAD-RDSLHVKSADEAIRIGPPPARLSYLN------G 98 (765)
Q Consensus 36 ~~kkILI~g~G~---------~a~~iiraa-r~~Gi~vvav~s~~d-~~~~~~~~aD~~~~i~~~~~~~syld------~ 98 (765)
|.+||.|+-+|. .|..+++++ .+.+|+++.++-+.+ ..... .+................ .
T Consensus 1 ~~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (364)
T PRK14570 1 MKKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYL---LDSVPDPPKLIKRDVLPIVSLIPGC 77 (364)
T ss_pred CCcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEe---cCccccccccccccccccccccccc
Confidence 346888887662 278899998 578999999887655 21111 110000000000000000 0
Q ss_pred HHHHHHHHHhCCCEEEeC-CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCC----
Q 041518 99 SSIVDAAIRTGAQAIHPG-YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNE---- 173 (765)
Q Consensus 99 ~~Il~~a~~~~~DaV~pg-~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~---- 173 (765)
..+.. .+..++|.|+|. .|...|+..+..+++.+|+|++|++..+..++.||..+|++|+++|||+||+.....
T Consensus 78 ~~~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~ 156 (364)
T PRK14570 78 GIFVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYF 156 (364)
T ss_pred ccccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEeccccc
Confidence 00110 122468999998 577889999999999999999999999999999999999999999999999865431
Q ss_pred CCHHHHHHH-HHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEec
Q 041518 174 QDIDLMKSE-AAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDK 252 (765)
Q Consensus 174 ~s~~e~~~~-~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~ 252 (765)
.+.+++.+. ...+|||+||||..+++|.||.++++.+||..+++.+... ++.+|||+||+ |+|+++.++++.
T Consensus 157 ~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~-GrEi~v~Vlg~~ 229 (364)
T PRK14570 157 LDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIE-AREIECSVIGNE 229 (364)
T ss_pred cchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcC-CEEEEEEEECCC
Confidence 134455443 4679999999999999999999999999999999887642 46899999999 699999999875
Q ss_pred cccEEEEEeeec------cccccc-----eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEE
Q 041518 253 YGKVLHLYERDC------SVQRRH-----QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFY 321 (765)
Q Consensus 253 ~g~vv~l~~r~~------s~~~~~-----~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~ 321 (765)
...+....+... .+...+ +......|+ .+++++.+++.+.|.++.++||++|.++|||++++++|++|
T Consensus 230 ~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa-~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~y 308 (364)
T PRK14570 230 QIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPA-HLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIY 308 (364)
T ss_pred CceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEE
Confidence 544444443211 010111 112334688 69999999999999999999999999999999996348899
Q ss_pred EEEecccCCcc-c---cccceecCCCHHHH---HHHHHc
Q 041518 322 FMEMNTRLQVE-H---PVTEMIVDQDLVEW---QIRVAN 353 (765)
Q Consensus 322 ~iEiN~R~~~~-~---~~~e~~tGvDl~~~---~i~~a~ 353 (765)
|+|+||++|.. + |..-...|+++.++ +++.|+
T Consensus 309 vlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~ 347 (364)
T PRK14570 309 LNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAF 347 (364)
T ss_pred EEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999832 2 22223468875554 444444
No 56
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.97 E-value=9.7e-29 Score=268.24 Aligned_cols=277 Identities=20% Similarity=0.288 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHH-HHHH-HHHhCCCEEEeCC-CcccccH
Q 041518 48 IAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSS-IVDA-AIRTGAQAIHPGY-GFLSESA 124 (765)
Q Consensus 48 ~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~-Il~~-a~~~~~DaV~pg~-g~lsE~~ 124 (765)
.+.+++++++++|++++.++.+.+... . +.+... +... ....++|+|+|.. |...|+.
T Consensus 19 s~~~i~~al~~~g~~v~~i~~~~~~~~-----------~--------~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~ 79 (315)
T TIGR01205 19 SAAAVLKALRDLGYDVYPVDIDKMGSW-----------T--------YKDLPQLILELGALLEGIDVVFPVLHGRYGEDG 79 (315)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCCccc-----------c--------ccchHHHHhhccccCCCCCEEEEecCCCCCCCc
Confidence 378999999999999999986643311 0 011111 1111 1125789999973 5567888
Q ss_pred HHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccC-C-CCHHHH--HHHHHHhCCcEEEeecCCCCC
Q 041518 125 DFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGN-E-QDIDLM--KSEAAKIGYPILIKPTHGGGG 200 (765)
Q Consensus 125 ~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~-~-~s~~e~--~~~~~~ig~PvVVKP~~g~Gg 200 (765)
.++..++.+|++++|+++.++.++.||..++++|+++|||+|++.... . .+.+++ ..+.+.++||+|+||..|+||
T Consensus 80 ~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s 159 (315)
T TIGR01205 80 TIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREGSS 159 (315)
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCCCc
Confidence 899999999999999999999999999999999999999999987543 1 122222 234467999999999999999
Q ss_pred ccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEE-EEEeeeccc---cccc--eeee
Q 041518 201 KGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVL-HLYERDCSV---QRRH--QKII 274 (765)
Q Consensus 201 ~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv-~l~~r~~s~---~~~~--~k~~ 274 (765)
+||.+++|.+|+.++++.+... +..+++|+||+ |+|+++.+++++++..+ .+..+...+ ...+ ....
T Consensus 160 ~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~-G~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (315)
T TIGR01205 160 VGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIK-GRELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTE 232 (315)
T ss_pred cCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCC-CEEEEEEEECCCCccceEEecCCCCCeeCcccccCCCCee
Confidence 9999999999999998876532 46899999999 69999999985433222 211111101 1111 1122
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccc-c---ccceecCCCHHHHHHH
Q 041518 275 EEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEH-P---VTEMIVDQDLVEWQIR 350 (765)
Q Consensus 275 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~-~---~~e~~tGvDl~~~~i~ 350 (765)
...|+ .++++..++|.+.+.+++++||++|+++|||++++ +|++||||+|||++... . ..-...|+|+.++...
T Consensus 233 ~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ 310 (315)
T TIGR01205 233 YVIPA-PLDEELEEKIKELALKAYKALGCRGLARVDFFLDE-EGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLVER 310 (315)
T ss_pred EEeCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHH
Confidence 23576 68999999999999999999999999999999997 77899999999997322 1 2223469998888776
Q ss_pred HH
Q 041518 351 VA 352 (765)
Q Consensus 351 ~a 352 (765)
+.
T Consensus 311 ii 312 (315)
T TIGR01205 311 IL 312 (315)
T ss_pred HH
Confidence 54
No 57
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.96 E-value=1e-26 Score=250.61 Aligned_cols=260 Identities=19% Similarity=0.256 Sum_probs=195.5
Q ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC-CCcccccHHHH
Q 041518 49 AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG-YGFLSESADFA 127 (765)
Q Consensus 49 a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg-~g~lsE~~~~a 127 (765)
+..+++++++.|++++.++.+.+. +....+..++|.|++. .|...|+..++
T Consensus 21 ~~~i~~al~~~g~~~~~i~~~~~~----------------------------~~~~~~~~~~D~v~~~~~g~~ge~~~~~ 72 (299)
T PRK14571 21 GERVKKALEKLGYEVTVFDVDEDF----------------------------LKKVDQLKSFDVVFNVLHGTFGEDGTLQ 72 (299)
T ss_pred HHHHHHHHHHcCCeEEEEccCchH----------------------------HHHhhhccCCCEEEEeCCCCCCCccHHH
Confidence 788999999999999888643210 0011112468999987 45566888999
Q ss_pred HHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEEC
Q 041518 128 QLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQ 207 (765)
Q Consensus 128 ~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~ 207 (765)
..++.+|++++|+++.++.++.||..+|++++ +|||+|++.... +.. ....++||+|+||..|+||+||.+++
T Consensus 73 ~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~~~--~~~----~~~~l~~P~vvKP~~g~~s~Gv~~v~ 145 (299)
T PRK14571 73 AILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVEIK--EFM----KTSPLGYPCVVKPRREGSSIGVFICE 145 (299)
T ss_pred HHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEEEe--chh----hhhhcCCCEEEecCCCCCcCCEEEEC
Confidence 99999999999999999999999999999998 589999987543 221 24568999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEecccc-EEEEEeeec-----cccccc--eeeeeecCC
Q 041518 208 SPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGK-VLHLYERDC-----SVQRRH--QKIIEEAPA 279 (765)
Q Consensus 208 s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~-vv~l~~r~~-----s~~~~~--~k~~e~~Pa 279 (765)
|.+||.++++.+... ++.+|||+||+ |+|+++.+++++.+. ++.+.+..- .+...+ .......|+
T Consensus 146 ~~~el~~~~~~~~~~------~~~vlVEeyI~-G~E~sv~vl~~~~~~~vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p~ 218 (299)
T PRK14571 146 SDEEFQHALKEDLPR------YGSVIVQEYIP-GREMTVSILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPA 218 (299)
T ss_pred CHHHHHHHHHHHHhh------CCcEEEEcccc-ceEEEEEEEcCCCCeeeeceEEEecCCCccccccccCCCCeeEEeCC
Confidence 999999988765431 35899999999 699999999875432 333332110 000011 011223577
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccc-cc---cceecCCCHHH---HHHHHH
Q 041518 280 PNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEH-PV---TEMIVDQDLVE---WQIRVA 352 (765)
Q Consensus 280 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~-~~---~e~~tGvDl~~---~~i~~a 352 (765)
.++++..++|.+.+.++++++|++|+++|||+++ +|++||+|+|++++... .. .-...|+|+.+ .+++.+
T Consensus 219 -~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~--~~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii~~a 295 (299)
T PRK14571 219 -PLNPEEERLVKETALKAFVEAGCRGFGRVDGIFS--DGRFYFLEINTVPGLTELSDLPASAKAGGIEFEELVDIIIKSA 295 (299)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE--CCcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999998 57899999999998322 11 11245888776 444444
Q ss_pred c
Q 041518 353 N 353 (765)
Q Consensus 353 ~ 353 (765)
+
T Consensus 296 ~ 296 (299)
T PRK14571 296 F 296 (299)
T ss_pred H
Confidence 3
No 58
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.96 E-value=6.9e-27 Score=283.22 Aligned_cols=301 Identities=16% Similarity=0.140 Sum_probs=218.1
Q ss_pred CCEEEEEcCcH---------HHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHH
Q 041518 37 IEKILIANRGE---------IAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIR 107 (765)
Q Consensus 37 ~kkILI~g~G~---------~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~ 107 (765)
++||.|+-+|. .|..+++++++.||+++.++-+.+... ..................+. ..+.. ..
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~--~~~~~~~~~~~~~~~~~~~~--~~~~~--~~ 524 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLW--ETVSSLETAIEEDSGKSVLS--SEIAQ--AL 524 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeE--Eecccccccccccccccccc--hhhhh--cc
Confidence 45787776662 278899999999999999886654311 11110000000000000111 11110 11
Q ss_pred hCCCEEEeC-CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCC----CCHH-HHHH
Q 041518 108 TGAQAIHPG-YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNE----QDID-LMKS 181 (765)
Q Consensus 108 ~~~DaV~pg-~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~----~s~~-e~~~ 181 (765)
.++|.++|. .|...|+..+...|+.+|+||+|+++.+..++.||..+|++++++|||+||+..... .+.+ .+.+
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~~ 604 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAH 604 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHHH
Confidence 468999998 477889999999999999999999999999999999999999999999999876541 1122 3345
Q ss_pred HHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEE--E
Q 041518 182 EAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLH--L 259 (765)
Q Consensus 182 ~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~--l 259 (765)
..+.+|||+||||..+++|.||.+|++.+||.++++.+... ++++|||+||.+++|++|.+++++.+..+. .
T Consensus 605 ~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~~~~~~~ 678 (809)
T PRK14573 605 IVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSAYVIAGP 678 (809)
T ss_pred HHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCceEeccc
Confidence 67789999999999999999999999999999999887532 578999999998899999999987653322 1
Q ss_pred Eeeecc-----ccccce-----eeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccC
Q 041518 260 YERDCS-----VQRRHQ-----KIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRL 329 (765)
Q Consensus 260 ~~r~~s-----~~~~~~-----k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~ 329 (765)
.++.+. +...|. ......|+ .+++++.+++.+++.++.++||++|+++|||++++ +|++||+|||||+
T Consensus 679 ~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~-~g~~yv~EiNt~P 756 (809)
T PRK14573 679 HERRGSGGFIDYQEKYGLSGKSSAQIVFDL-DLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDE-EGNFWLSEMNPIP 756 (809)
T ss_pred eEEccCCCeeCchhcccCCCCCceEEecCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-CCCEEEEEeeCCC
Confidence 233221 111121 01122477 79999999999999999999999999999999997 7889999999999
Q ss_pred Cccc----cccceecCCCHHHHHHHH
Q 041518 330 QVEH----PVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 330 ~~~~----~~~e~~tGvDl~~~~i~~ 351 (765)
|... |..-...|+++.++.-++
T Consensus 757 G~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 757 GMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 8322 323335688765554443
No 59
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=99.93 E-value=1.1e-26 Score=209.12 Aligned_cols=91 Identities=48% Similarity=0.748 Sum_probs=86.0
Q ss_pred EEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe---------------e-EEe
Q 041518 372 EARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---------------K-TVA 435 (765)
Q Consensus 372 ~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---------------~-~i~ 435 (765)
|||||||||.++|.|++|+|..+++|. ++| ||+|+++..|+.|+++|||||||||+|| + .|.
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~-g~g-vRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~ 78 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPG-GPG-VRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIE 78 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SS-STT-EEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEE
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCC-CCC-eeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEE
Confidence 799999999999999999999999997 899 9999999999999999999999999999 7 999
Q ss_pred ccccCHHHHHHHhcCcCcccCcccccccc
Q 041518 436 GVPTNINFLQKLAKHRAFESGDVETHFIE 464 (765)
Q Consensus 436 g~~tn~~~l~~~~~~~~~~~~~~~t~~~~ 464 (765)
|++||++||++||.||+|++|+++|+|||
T Consensus 79 Gv~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 79 GVKTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SSSHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred CccCCHHHHHHHhCCcccccCCCeeeccC
Confidence 99999999999999999999999999986
No 60
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.93 E-value=8.5e-24 Score=228.02 Aligned_cols=277 Identities=17% Similarity=0.144 Sum_probs=197.8
Q ss_pred EEEEEcCc---HHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 39 KILIANRG---EIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 39 kILI~g~G---~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|++|+.+. ..+.+++++++++|+++..+..+........ ..+..+. .. .+..++|+|++
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~-~~~~~~~----------~~-------~~~~~~d~v~~ 63 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINP-AASSIHY----------KG-------RKLPHFDAVIP 63 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCC-CcccEEE----------CC-------cccCCCCEEEE
Confidence 47777743 4578999999999999988864321100000 0111110 10 01137899998
Q ss_pred CCCcc-ccc-HHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHh-CCcEEE
Q 041518 116 GYGFL-SES-ADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKI-GYPILI 192 (765)
Q Consensus 116 g~g~l-sE~-~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~i-g~PvVV 192 (765)
..+.. ... ...+..++..| +++++++.++..+.||..++++++++|||+|++.... +.+++.++++.+ +||+|+
T Consensus 64 ~~~~~~~~~~~~~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~--~~~~~~~~~~~~~~~P~Vv 140 (300)
T PRK10446 64 RIGTAITFYGTAALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAH--SPDDTSDLIDMVGGAPLVV 140 (300)
T ss_pred cCCCchhhHHHHHHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeC--CHHHHHHHHHHhCCCCEEE
Confidence 64321 111 22356788999 5678999999999999999999999999999987544 778888887777 799999
Q ss_pred eecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccC--CCeeEEEEEEEeccccEEEEEeeeccccccc
Q 041518 193 KPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYIT--QPRHIEVQIFGDKYGKVLHLYERDCSVQRRH 270 (765)
Q Consensus 193 KP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~--ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~ 270 (765)
||..|++|+||+++++.+++..+++.+... +..+|+|+||+ .++++.+.+++ ++++....|..+.....
T Consensus 141 KP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g~d~rv~vig---~~~~~~~~r~~~~~~~~ 211 (300)
T PRK10446 141 KLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQGCDIRCLVVG---DEVVAAIERRAKEGDFR 211 (300)
T ss_pred EECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCCceEEEEEEC---CEEEEEEEEecCCCchh
Confidence 999999999999999999988887765321 46899999995 36899998874 35566655543221111
Q ss_pred eeee---eecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHH
Q 041518 271 QKII---EEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEW 347 (765)
Q Consensus 271 ~k~~---e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~ 347 (765)
.+.. ...|. .+ .+++.+.|.++++++|+. .++|||++++ +| +||+|||++++ ...++..+|+|+.+.
T Consensus 212 ~n~~~g~~~~~~-~l----~~~~~~~a~~a~~alg~~-~~gvD~~~~~-~g-~~vlEvN~~pg--~~~~~~~~g~~~~~~ 281 (300)
T PRK10446 212 SNLHRGGAASVA-SI----TPQEREIAIKAARTMALD-VAGVDILRAN-RG-PLVMEVNASPG--LEGIEKTTGIDIAGK 281 (300)
T ss_pred heeccCCeeccC-CC----CHHHHHHHHHHHHHhCCC-EEEEEEEEcC-CC-cEEEEEECCCC--hhhhHHHHCcCHHHH
Confidence 1111 11232 33 356789999999999996 8999999986 55 99999999995 334677899999999
Q ss_pred HHHHHcCC
Q 041518 348 QIRVANGE 355 (765)
Q Consensus 348 ~i~~a~G~ 355 (765)
+++.....
T Consensus 282 ~~~~i~~~ 289 (300)
T PRK10446 282 MIRWIERH 289 (300)
T ss_pred HHHHHHHh
Confidence 99887554
No 61
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=242.79 Aligned_cols=304 Identities=20% Similarity=0.278 Sum_probs=259.7
Q ss_pred CCEEEEEcCcHH-----------HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHH
Q 041518 37 IEKILIANRGEI-----------AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAA 105 (765)
Q Consensus 37 ~kkILI~g~G~~-----------a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a 105 (765)
.+.++|+|+|-. |+..+|++|++|++|+.|..+|..-+.....||+.|. +.+..+.++++-
T Consensus 918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYF--------eeis~E~vmDiY 989 (1435)
T KOG0370|consen 918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYF--------EEISYERVMDIY 989 (1435)
T ss_pred CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHhH--------hhhhhhhhhhhh
Confidence 367899999843 7889999999999999999999999999999999875 236778999999
Q ss_pred HHhCCCEEEeCCCc-ccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHH
Q 041518 106 IRTGAQAIHPGYGF-LSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAA 184 (765)
Q Consensus 106 ~~~~~DaV~pg~g~-lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~ 184 (765)
+.++..+|+...|. +. ..+|-.+.+.|..++|.+|+.+..+.|+.++.+.|.+.||..|+|.... +.+++.+|++
T Consensus 990 e~E~~~G~iis~GGQ~p--nNiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt--~~~eA~~F~~ 1065 (1435)
T KOG0370|consen 990 ELENSEGIIISVGGQLP--NNIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELT--SLEEAKKFAE 1065 (1435)
T ss_pred hhccCCceEEEecCcCc--chhhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhhhc--cHHHHHHHHH
Confidence 99999988877654 33 3456778899999999999999999999999999999999999998765 9999999999
Q ss_pred HhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeee-
Q 041518 185 KIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERD- 263 (765)
Q Consensus 185 ~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~- 263 (765)
+.||||+|.|+.--+|.-|.++.+.+||+..++.+..-++ +.++++-+||+|.+|++++.++. +|+++...-.+
T Consensus 1066 ~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~----dhPVVisKfie~AkEidvDAVa~-~G~~~~haiSEH 1140 (1435)
T KOG0370|consen 1066 KVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSP----DHPVVISKFIEGAKEIDVDAVAS-DGKVLVHAISEH 1140 (1435)
T ss_pred hcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCC----CCCEEhHHhhcccceechhhhcc-CCeEEEEehhhh
Confidence 9999999999999999999999999999999999876544 68999999999999999999874 35555432110
Q ss_pred ccccccc-eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCC
Q 041518 264 CSVQRRH-QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQ 342 (765)
Q Consensus 264 ~s~~~~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGv 342 (765)
.....-| ...--..|...++++..+++.+++.++++++.+.|+++++|+.. ++++.+||+|-|.+...|++....|+
T Consensus 1141 vEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k--~n~lkVIECN~RaSRSFPFvSKtlgv 1218 (1435)
T KOG0370|consen 1141 VENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAK--DNELKVIECNVRASRSFPFVSKTLGV 1218 (1435)
T ss_pred hhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEec--CCeEEEEEeeeeeeccccceehhcCc
Confidence 0111111 11112246668999999999999999999999999999999998 67899999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCC
Q 041518 343 DLVEWQIRVANGEPLPL 359 (765)
Q Consensus 343 Dl~~~~i~~a~G~~l~~ 359 (765)
|+++...+..+|.+++.
T Consensus 1219 dfi~~At~~i~g~~~~~ 1235 (1435)
T KOG0370|consen 1219 DFIALATRAIMGVPVPP 1235 (1435)
T ss_pred hHHHHHHHHHhCCCCCC
Confidence 99999999999988764
No 62
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.93 E-value=1e-23 Score=224.22 Aligned_cols=266 Identities=15% Similarity=0.177 Sum_probs=190.6
Q ss_pred CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCCcccccH
Q 041518 45 RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESA 124 (765)
Q Consensus 45 ~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g~lsE~~ 124 (765)
.+....+++++++++|+++..+..+.. .+.+.... . ....+|+|++......+..
T Consensus 9 ~~~~~~~l~~a~~~~g~~~~~~~~~~~-----------~~~~~~~~-----~---------~~~~~d~v~~r~~~~~~~~ 63 (277)
T TIGR00768 9 IRLDEKMLKEAAEELGIDYKVVTPPAI-----------PLTFNEGP-----R---------ELAELDVVIVRIVSMFRGL 63 (277)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEhHHc-----------EEeccCCC-----c---------cCCCCCEEEEechhHhhHH
Confidence 345677899999999999888753211 11111000 0 0234788887652222234
Q ss_pred HHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEE
Q 041518 125 DFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMR 204 (765)
Q Consensus 125 ~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~ 204 (765)
.+++.++..|++++ ++++++..+.||..++++++++|+|+|++.... +.+++.++.++++||+|+||..|+||+|+.
T Consensus 64 ~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~--~~~~~~~~~~~~~~p~vvKP~~g~~g~gv~ 140 (277)
T TIGR00768 64 AVARYLESLGVPVI-NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAG--SPEEALKLIEEIGFPVVLKPVFGSWGRLVS 140 (277)
T ss_pred HHHHHHHHCCCeee-CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeC--CHHHHHHHHHhcCCCEEEEECcCCCCCceE
Confidence 67788899999988 468999999999999999999999999987655 888999999999999999999999999999
Q ss_pred EECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeee--ccccccceeeeeecCCCCC
Q 041518 205 IVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERD--CSVQRRHQKIIEEAPAPNV 282 (765)
Q Consensus 205 ~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~--~s~~~~~~k~~e~~Pa~~l 282 (765)
++++.+++..+++....... ....+++|+||++....++.++..+ |+++....|. ..............|. .+
T Consensus 141 ~i~~~~~l~~~~~~~~~~~~---~~~~~lvQe~I~~~~~~~~rv~v~~-~~~~~~~~r~~~~~~~~n~~~g~~~~~~-~l 215 (277)
T TIGR00768 141 LARDKQAAETLLEHFEQLNG---PQNLFYVQEYIKKPGGRDIRVFVVG-DEVIAAIYRITSGHWRTNLARGGKAEPC-PL 215 (277)
T ss_pred EEcCHHHHHHHHHHHHHhcc---cCCcEEEEeeecCCCCceEEEEEEC-CEEEEEEEEcCCCchhhhhhcCCeeeec-CC
Confidence 99999999988776543211 1257999999996432445444433 3555554442 1111100001111233 23
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHH
Q 041518 283 THDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 283 ~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~ 351 (765)
+ +++.+.+.++++++|+ |.+.+||++++ +|++||+|+|+|++ ....+..+|+|+.+++++.
T Consensus 216 ~----~~~~~~a~~~~~~l~~-~~~~vD~~~~~-~g~~~viEiN~~p~--~~~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 216 T----EEIEELAIKAAKALGL-DVVGIDLLESE-DRGLLVNEVNPNPE--FKNSVKTTGVNIAGKLLDY 276 (277)
T ss_pred C----HHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCeEEEEEcCCcc--hhhhHHHHCCCHHHHHHhh
Confidence 3 4688899999999999 88999999997 77899999999995 3445778999999998864
No 63
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.92 E-value=2.6e-24 Score=214.23 Aligned_cols=177 Identities=23% Similarity=0.389 Sum_probs=129.9
Q ss_pred HhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhc
Q 041518 147 DMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAAS 226 (765)
Q Consensus 147 ~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~ 226 (765)
++.||..|+++++++|||+|++.... +.+++.++...++||+||||..|+||+|++++++.+|+.++++.+.....
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~--~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVD--SEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEEC--SHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEEC--CHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 47899999999999999999987665 89999999999999999999999999999999999999999998876532
Q ss_pred CCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeecccc-cc-c---eeeeeecCCCCCCHHHHHHHHHHHHHHHHHc
Q 041518 227 FGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQ-RR-H---QKIIEEAPAPNVTHDFRALLGQAAVSAAKAV 301 (765)
Q Consensus 227 fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~-~~-~---~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al 301 (765)
.....+++|+||+ +.++++.++.+ +|.++.+...+.... .. . .......+. +....+++.+.+.++++++
T Consensus 77 ~~~~~~ivqe~i~-g~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 151 (184)
T PF13535_consen 77 LGNGPVIVQEYIP-GDEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPS---EPPLPEELRDLARKLLRAL 151 (184)
T ss_dssp -HSSSEEEEE----SEEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES-----CEHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEeee-eeeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeeccc---ccccHHHHHHHHHHHHHHc
Confidence 1246899999999 59999999987 677766543322221 11 1 111112222 3334489999999999999
Q ss_pred CC-CceeEEEEEEECCCCcEEEEEecccCCccc
Q 041518 302 SY-HNAGTVEFIVDTVSDQFYFMEMNTRLQVEH 333 (765)
Q Consensus 302 g~-~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~ 333 (765)
|| .|++++||++++ +|++||||||||+++++
T Consensus 152 g~~~G~~~id~~~~~-~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 152 GYRNGFFHIDFIVDP-DGELYFIEINPRFGGGS 183 (184)
T ss_dssp T--SEEEEEEEEEET-CCEEEEEEEESS--STT
T ss_pred CCceEEEEEEEEEeC-CCCEEEEEECccCCCCC
Confidence 99 699999999998 68899999999998653
No 64
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.92 E-value=4.8e-23 Score=224.20 Aligned_cols=268 Identities=17% Similarity=0.244 Sum_probs=189.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCC-CCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE-EEeC
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADR-DSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA-IHPG 116 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~-~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da-V~pg 116 (765)
+|..+| +..++.|++.|++.|++++++....+. ......++|+++.++.. ++-.|.+...+.+ +. ++ ++|.
T Consensus 20 ~i~~~~-shsaL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~---~di~~~~~~~~l~-~~--~~iiIp~ 92 (358)
T PRK13278 20 TIATIG-SHSSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDF---SDILNEAVQEKLR-EM--NAILIPH 92 (358)
T ss_pred eEEEEe-cccHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcch---hhhcCHHHHHHHh-hc--CcEEEeC
Confidence 444444 456889999999999999999776542 23566788998876421 1113333333333 33 44 4454
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecC
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTH 196 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~ 196 (765)
|..........++ ++++++.| +.++++...||..+|++|+++|||+|+++. +.++ ++||+|+||..
T Consensus 93 -gs~v~y~~~d~l~-~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~~~----~~~~-------i~~PvIVKp~~ 158 (358)
T PRK13278 93 -GSFVAYLGLENVE-KFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRKYE----SPED-------IDRPVIVKLPG 158 (358)
T ss_pred -CCcceeecHHHHH-HCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCEeC----CHHH-------cCCCEEEEeCC
Confidence 3333333434443 78888775 888999999999999999999999999632 4433 57999999999
Q ss_pred CCCCccEEEECChhHHHHHHHHHHHHHHhcCC-CCcEEEecccCCCeeEEEEEEEec-cccEEEEE--eeecc----ccc
Q 041518 197 GGGGKGMRIVQSPNDFVDSFLGAQREAAASFG-INTILLEKYITQPRHIEVQIFGDK-YGKVLHLY--ERDCS----VQR 268 (765)
Q Consensus 197 g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg-~~~vlVEeyI~ggrei~v~v~~d~-~g~vv~l~--~r~~s----~~~ 268 (765)
|.||+|+++++|.+|+.++++.+.... .++ .+.++|||||. |.|+++++|... +|++-.++ .|--+ ..+
T Consensus 159 g~ggkGv~i~~s~~El~~~~~~l~~~~--~~~~~~~~iIEEfI~-G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r 235 (358)
T PRK13278 159 AKGGRGYFIAKSPEEFKEKIDKLIERG--LITEVEEAIIQEYVV-GVPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVR 235 (358)
T ss_pred CCCCCCeEEeCCHHHHHHHHHHHHhcc--ccCCCCeEEEEecCC-CcEEEEEEEEeccCCeEEEEeeceeeeecccceee
Confidence 999999999999999999998875421 111 47899999999 579999999752 34433331 22111 000
Q ss_pred ---c-------ce--eeeeecCCCCCCHHHHHHHHHHHHHHHHH----c--CCCceeEEEEEEECCCCcEEEEEecccCC
Q 041518 269 ---R-------HQ--KIIEEAPAPNVTHDFRALLGQAAVSAAKA----V--SYHNAGTVEFIVDTVSDQFYFMEMNTRLQ 330 (765)
Q Consensus 269 ---~-------~~--k~~e~~Pa~~l~~~~~~~l~~~a~~i~~a----l--g~~G~~~vEf~~~~~~g~~~~iEiN~R~~ 330 (765)
. +. -.....|+ .+.+.+.+++.+.+.+++++ + |..|++++|+++++ ++.+|++|+|+|++
T Consensus 236 ~p~~~~~~~~~~p~~v~~Gn~P~-~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~-d~~~~V~Eis~R~~ 313 (358)
T PRK13278 236 IPAKDQLELGIDPTYVVVGNIPV-VLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTD-NLEIVVFEISARIV 313 (358)
T ss_pred ccchhhhhcccCCceeEecceec-cchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcC-CCCEEEEEEeCccc
Confidence 0 00 11223467 67888999999999999998 4 66699999999997 88899999999996
Q ss_pred cc
Q 041518 331 VE 332 (765)
Q Consensus 331 ~~ 332 (765)
++
T Consensus 314 gg 315 (358)
T PRK13278 314 AG 315 (358)
T ss_pred CC
Confidence 43
No 65
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.92 E-value=1.5e-25 Score=202.18 Aligned_cols=91 Identities=44% Similarity=0.703 Sum_probs=88.6
Q ss_pred EEEecccCCCCCCCCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEe---------------e-EEe
Q 041518 372 EARIYAENVPKGFLPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGA---------------K-TVA 435 (765)
Q Consensus 372 ~~ri~ae~p~~~f~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g---------------~-~i~ 435 (765)
|||||||||.++|+|++|+|+.+++|. ++| ||+|+++.+|++|+++|||||||||+|| + .|.
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~-g~g-vR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~ 78 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPG-GPG-VRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIE 78 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCC-CCC-EEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEE
Confidence 589999999999999999999999998 799 9999999999999999999999999999 6 999
Q ss_pred ccccCHHHHHHHhcCcCcccCcccccccc
Q 041518 436 GVPTNINFLQKLAKHRAFESGDVETHFIE 464 (765)
Q Consensus 436 g~~tn~~~l~~~~~~~~~~~~~~~t~~~~ 464 (765)
|++||++||++|+.+|+|++|+++|+||+
T Consensus 79 Gv~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 79 GVKTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred CccCCHHHHHHHhcCHhhhcCcccccccC
Confidence 99999999999999999999999999985
No 66
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.92 E-value=2.2e-23 Score=214.44 Aligned_cols=298 Identities=19% Similarity=0.232 Sum_probs=214.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCc--CCCCHHHHHHHHHHh--CCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARL--SYLNGSSIVDAAIRT--GAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~--syld~~~Il~~a~~~--~~Da 112 (765)
+-|||++|-. .+.+..+|.++|++|.++....+.+-. ..++.++...+...-. .-+|.+.|++++.+. .+|+
T Consensus 11 ~~kiLviGvn--tR~vveSA~klGf~V~sv~~y~~~Dl~--~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~ 86 (389)
T COG2232 11 SCKILVIGVN--TRPVVESASKLGFEVYSVQYYDPADLP--GDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDA 86 (389)
T ss_pred cceEEEEeec--chHhHHHHHhcCeEEEEeEeecccccc--cccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcce
Confidence 5689999854 456899999999999998655444433 4566666554422212 246778999999875 5677
Q ss_pred -EEeCCCcccccHHHHHHHHHCCCcEECCcHH-HHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcE
Q 041518 113 -IHPGYGFLSESADFAQLCGDNGLTFIGPPVS-AIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPI 190 (765)
Q Consensus 113 -V~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~e-ai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~Pv 190 (765)
++|+.||-..+ .--..+.++.|++++ .+..+.+|.++.+.+..+|+|.|+.+.. +. ...--+|+
T Consensus 87 ~ii~~sg~e~l~-----~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~-----e~----~~~gekt~ 152 (389)
T COG2232 87 PIIPFSGFEALR-----TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKI-----EP----LEEGEKTL 152 (389)
T ss_pred eeeecccccccc-----ccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhh-----hh----hhhcceee
Confidence 77776653322 113566778898888 8999999999999999999999975422 11 11223689
Q ss_pred EEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeecccc---
Q 041518 191 LIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQ--- 267 (765)
Q Consensus 191 VVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~--- 267 (765)
|+||+.|+||. +.++.=.++.. ...+++|+||+ |+++++++++++. ..+.+...+.-+.
T Consensus 153 IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~-G~p~Svs~is~g~-~a~~la~N~QiI~~~~ 214 (389)
T COG2232 153 ILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIE-GRPVSVSFISNGS-DALTLAVNDQIIDGLR 214 (389)
T ss_pred EEeeccCCCce-eeecccccccC---------------CcceehhhhcC-CceeEEEEEecCc-ceEEEEEeeeeecccc
Confidence 99999999996 33332222211 15899999999 6999999999876 4444422211111
Q ss_pred ---ccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCH
Q 041518 268 ---RRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDL 344 (765)
Q Consensus 268 ---~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl 344 (765)
..+......+|.+ ..+. +++.+.+..++..||+.|.-.|||+++ +.++|+||||||+|+....+|+.+|+|+
T Consensus 215 ~~~~~f~Y~GNlTP~~--~~~~-ee~e~la~elV~~lgL~GsnGVDfvl~--d~gpyViEVNPR~qGt~e~iE~s~giNl 289 (389)
T COG2232 215 GEYSQFVYKGNLTPFP--YEEV-EEAERLAEELVEELGLVGSNGVDFVLN--DKGPYVIEVNPRIQGTLECIERSSGINL 289 (389)
T ss_pred cccccceeccCcCCCc--chhh-HHHHHHHHHHHHHhccccccccceEee--cCCcEEEEecCcccchHHHHHHhcCCCH
Confidence 1111223335653 3333 889999999999999999999999999 5669999999999998899999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCcccceEEEEEEecccC
Q 041518 345 VEWQIRVANGEPLPLSQSEVPLLGHAFEARIYAEN 379 (765)
Q Consensus 345 ~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~ 379 (765)
+++++++..|+-+. .+.++++|+..-+||..
T Consensus 290 ~~lHi~af~G~LpE----r~kpr~~a~krILyap~ 320 (389)
T COG2232 290 FRLHIQAFDGELPE----RPKPRGYACKRILYAPR 320 (389)
T ss_pred HHHHHHHhcCcCcC----CCCcceeEEeEEEeccc
Confidence 99999999998643 66778999887777643
No 67
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.91 E-value=1.5e-22 Score=216.08 Aligned_cols=264 Identities=18% Similarity=0.221 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCCcccccHHHH
Q 041518 48 IAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFA 127 (765)
Q Consensus 48 ~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g~lsE~~~~a 127 (765)
--..++++++++|+++..++.+.. .+.+.... . .-.++|++++..........++
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~-----------~~~~~~~~-----~---------~~~~~d~v~~r~~~~~~~~~~~ 65 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPAL-----------PLPFGERP-----K---------ELEDVDVAIIRCVSQSRALYSA 65 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhhe-----------EEEcCCCc-----c---------ccCCCCEEEEcCcchhhHHHHH
Confidence 356789999999999888764311 12111100 0 1135788887521111223456
Q ss_pred HHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEEC
Q 041518 128 QLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQ 207 (765)
Q Consensus 128 ~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~ 207 (765)
..++..|+++++ ++++++.+.||..++++|+++|||+|++.... +.+++.++...++||+|+||..|+||+|+.+++
T Consensus 66 ~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~--~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~ 142 (280)
T TIGR02144 66 RLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRTYLAF--DREAALKLAEALGYPVVLKPVIGSWGRLVALIR 142 (280)
T ss_pred HHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeC--CHHHHHHHHHHcCCCEEEEECcCCCcCCEEEEC
Confidence 778999999985 67999999999999999999999999987654 788888888899999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCcEEEecccCC-CeeEEEEEEEeccccEEEEEeeeccccccc-eeeeeecCCCCCCHH
Q 041518 208 SPNDFVDSFLGAQREAAASFGINTILLEKYITQ-PRHIEVQIFGDKYGKVLHLYERDCSVQRRH-QKIIEEAPAPNVTHD 285 (765)
Q Consensus 208 s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~g-grei~v~v~~d~~g~vv~l~~r~~s~~~~~-~k~~e~~Pa~~l~~~ 285 (765)
+.+++.++++..... ....+..+++|+||++ ++++.+.++++ ...+...|.....+.+ .......|. .++
T Consensus 143 ~~~~l~~~~~~~~~~--~~~~~~~~ivQefI~~~~~d~~v~vig~---~~~~~~~r~~~~~~~~~~~g~~~~~~-~~~-- 214 (280)
T TIGR02144 143 DKDELESLLEHKEVL--GGSQHKLFYIQEYINKPGRDIRVFVIGD---EAIAAIYRYSNHWRTNTARGGKAEPC-PLD-- 214 (280)
T ss_pred CHHHHHHHHHHHHhh--cCCcCCeEEEEcccCCCCCceEEEEECC---EEEEEEEEcCCchhhhhhcCCceecc-CCC--
Confidence 999998877543211 1111357999999986 57777777632 3333222211100101 001112233 234
Q ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHHc
Q 041518 286 FRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVAN 353 (765)
Q Consensus 286 ~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a~ 353 (765)
+++.+.+.++++++|+ |.++|||++++ +|++||+|+|+|++.. -++..+|+|+.++.++.+.
T Consensus 215 --~~~~~~a~~~~~~lg~-~~~~vD~~~~~-~g~~~v~EvN~~p~~~--~~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 215 --EEVEELAVKAAEAVGG-GVVAIDIFESK-ERGLLVNEVNHVPEFK--NSVRVTGVNVAGEILEYAV 276 (280)
T ss_pred --HHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCEEEEEEeCCcchh--hhhHhhCCCHHHHHHHHHH
Confidence 4577889999999997 79999999987 7789999999999632 2466789999999998764
No 68
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.91 E-value=3e-22 Score=214.45 Aligned_cols=293 Identities=17% Similarity=0.201 Sum_probs=210.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCccc---ccccEEEEcCCCCcCcCCCCH--HHHHHHHHHhCCCEE
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHV---KSADEAIRIGPPPARLSYLNG--SSIVDAAIRTGAQAI 113 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~---~~aD~~~~i~~~~~~~syld~--~~Il~~a~~~~~DaV 113 (765)
+|..+| ...|+.|.+-||+.|++|+++.... ...++. ..+|+.+.++. |.++ +.+.+-+++. ++|
T Consensus 19 ~i~t~~-SHsal~i~~gAk~egf~t~~v~~~~-r~~~Y~~f~~~~d~~i~~~~------f~~~~~~~~~~~l~~~--n~i 88 (366)
T PRK13277 19 KIGVLA-SHSALDVFDGAKDEGFRTIAVCQKG-RERTYREFKGIVDEVIVLDK------FKDILSEKVQDELREE--NAI 88 (366)
T ss_pred EEEEEe-cchHHHHhccHHhcCCcEEEEEcCC-CcchhhhhccccceEEEecc------hhhhhhHHHHHHHHHC--CeE
Confidence 455554 4678999999999999999986543 222333 45799988743 4432 3555555544 445
Q ss_pred EeCCCcccccHHHHHHHHHCCCcEECCcHHHHHH--hcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEE
Q 041518 114 HPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRD--MGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPIL 191 (765)
Q Consensus 114 ~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~--~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvV 191 (765)
+.-.|.+.+....-..-.+..+|++|+. ..++. -+||..+.++|+++||++|+.+. ++ +++.+|||
T Consensus 89 ~iPh~sf~~y~g~~~ie~~~~vp~fGnr-~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~~----~p-------~eId~PVI 156 (366)
T PRK13277 89 FVPNRSFAVYVGYDAIENEFKVPIFGNR-YLLRWEERTGEKNYYWLLEKAGIPYPKLFK----DP-------EEIDRPVI 156 (366)
T ss_pred EecCCCeEEEecHHHHhhcCCCCcccCH-HHhhhhhccCHHHHHHHHHHcCCCCceeec----Cc-------cccCccEE
Confidence 5555666655444444336899999864 44444 48899988899999999999764 22 35789999
Q ss_pred EeecCCCC--CccEEEECChhHHHHHHHHHHHHHHh-cCCCCcEEEecccCCCeeEEEEEEEec-cccEEEEE--eeecc
Q 041518 192 IKPTHGGG--GKGMRIVQSPNDFVDSFLGAQREAAA-SFGINTILLEKYITQPRHIEVQIFGDK-YGKVLHLY--ERDCS 265 (765)
Q Consensus 192 VKP~~g~G--g~Gv~~v~s~~el~~a~~~~~~ea~~-~fg~~~vlVEeyI~ggrei~v~v~~d~-~g~vv~l~--~r~~s 265 (765)
|||..|.| |+|+++++|.+|+....++......- .-+..+++|||||. |.++.+++|.+. +|++..++ .|.-+
T Consensus 157 VKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~-G~ey~~d~F~s~l~g~ve~l~id~R~es 235 (366)
T PRK13277 157 VKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI-GAHFNFNYFYSPIRDRLELLGIDRRIQS 235 (366)
T ss_pred EEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC-CCEEEEEEEEeccCCcEEEEEEeecccc
Confidence 99999999 99999999999998886665421000 00114667999999 589999999883 56555442 21111
Q ss_pred ---------c--------cccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcC------CCceeEEEEEEECCCCcEEE
Q 041518 266 ---------V--------QRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVS------YHNAGTVEFIVDTVSDQFYF 322 (765)
Q Consensus 266 ---------~--------~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg------~~G~~~vEf~~~~~~g~~~~ 322 (765)
. ..++... ...|. .+.+.+.+++.+.+.+++++++ +.|++++|+++++ ++++|+
T Consensus 236 n~dg~~r~pa~~ql~~~~~p~~vv~-G~~p~-t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~-d~~~~V 312 (366)
T PRK13277 236 NLDGFVRLPAPQQLKLNEEPRYIEV-GHEPA-TIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP-DLDFVV 312 (366)
T ss_pred ccccccccChhhhhhcccCCceEEE-cCccc-cchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC-CCcEEE
Confidence 0 0011111 13566 6777899999999999999976 6799999999987 799999
Q ss_pred EEecccCCccccccceecCCCHHHHHHH--HHcCCCCC
Q 041518 323 MEMNTRLQVEHPVTEMIVDQDLVEWQIR--VANGEPLP 358 (765)
Q Consensus 323 iEiN~R~~~~~~~~e~~tGvDl~~~~i~--~a~G~~l~ 358 (765)
+|||||++++.++ -+..|.|+..++++ +.+|+.+.
T Consensus 313 ~EInpR~gGGtnl-~~~aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 313 YDVAPRIGGGTNV-YMGVGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred EEEcCCcCCCccc-eeecCCCcHHHHhcCccccCCcch
Confidence 9999999977665 35569999999999 89998876
No 69
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=2.4e-21 Score=208.08 Aligned_cols=273 Identities=22% Similarity=0.290 Sum_probs=209.3
Q ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC-CCcccccHHHH
Q 041518 49 AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG-YGFLSESADFA 127 (765)
Q Consensus 49 a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg-~g~lsE~~~~a 127 (765)
+..++++++..|+.+..++...+.. +.+.. .... ..-.++|.++|. .|+..|+..+.
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~----------~~~~~-------~~~~-----~~~~~~~vvfp~lhG~~gEDg~iq 80 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGL----------WMLDK-------EVTK-----RVLQKADVVFPVLHGPYGEDGTIQ 80 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccce----------EEecc-------ccch-----hhcccCCEEEEeCCCCCCCCchHH
Confidence 6778999999999988887665332 11111 0000 122567888886 68888999999
Q ss_pred HHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCC--CHHHHHHHHHHhCCcEEEeecCCCCCccEEE
Q 041518 128 QLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQ--DIDLMKSEAAKIGYPILIKPTHGGGGKGMRI 205 (765)
Q Consensus 128 ~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~--s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~ 205 (765)
..++..|+|++|++..+.....||..+|++++..|+|++++...... +.....+....++||++|||...++|.|+.+
T Consensus 81 g~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~ 160 (317)
T COG1181 81 GLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSP 160 (317)
T ss_pred HHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCccceeeEEE
Confidence 99999999999999999999999999999999999999998765532 2334456677899999999999999999999
Q ss_pred ECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEE--Eee---eccccccceeee------
Q 041518 206 VQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHL--YER---DCSVQRRHQKII------ 274 (765)
Q Consensus 206 v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l--~~r---~~s~~~~~~k~~------ 274 (765)
+++.+|++.+++.+... +.++++|+|+. ++|+++.++.+.. ....+ .+. .-.+..+..|..
T Consensus 161 v~~~~d~~~~~e~a~~~------d~~vl~e~~~~-~rei~v~vl~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~ 232 (317)
T COG1181 161 VNVEGDLQSALELAFKY------DRDVLREQGIT-GREIEVGVLGNDY-EEQALPLGEIPPKGEEFYDYEAKYLSTGGAQ 232 (317)
T ss_pred eeeccchHHHHHHHHHh------CCceeeccCCC-cceEEEEecCCcc-cceecCceEEecCCCeEEeeeccccCCCCce
Confidence 99999999988777654 68999999999 8999999997643 22222 110 011112222222
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCC-cccccc---ceecCCCHHHHHHH
Q 041518 275 EEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQ-VEHPVT---EMIVDQDLVEWQIR 350 (765)
Q Consensus 275 e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~-~~~~~~---e~~tGvDl~~~~i~ 350 (765)
...|+ .++++..+++.++|.++.+++|..|.+.+||++++.+|++|++|+|+.+| ..+.+. -...|+++..+...
T Consensus 233 ~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~ 311 (317)
T COG1181 233 YDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLR 311 (317)
T ss_pred eeCCC-CCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhhHHHcCCCHHHHHHH
Confidence 24577 69999999999999999999999999999999995348899999999998 444333 33468887776665
Q ss_pred HH
Q 041518 351 VA 352 (765)
Q Consensus 351 ~a 352 (765)
+.
T Consensus 312 ~~ 313 (317)
T COG1181 312 FV 313 (317)
T ss_pred HH
Confidence 43
No 70
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.89 E-value=2.6e-23 Score=189.25 Aligned_cols=110 Identities=58% Similarity=0.865 Sum_probs=104.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|+|||||+|||++++|++++||++|++++++++++|..+.+.++||+.|.+++.+..++|+|.+.|+++++++++|++||
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 68999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred CCCcccccHHHHHHHHHCCCcEECCcHHHH
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIGPPVSAI 145 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai 145 (765)
||||++|++.|++.|++.|+.|+||+++++
T Consensus 81 Gyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 81 GYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp TSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred ccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 999999999999999999999999999875
No 71
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.89 E-value=1.9e-22 Score=232.90 Aligned_cols=270 Identities=24% Similarity=0.404 Sum_probs=194.9
Q ss_pred HHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCH--HHHHHHHHHhCCCEEEeCCCcccccHHH----
Q 041518 53 MRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNG--SSIVDAAIRTGAQAIHPGYGFLSESADF---- 126 (765)
Q Consensus 53 iraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~--~~Il~~a~~~~~DaV~pg~g~lsE~~~~---- 126 (765)
++-.+++|++.+.+++..+.++. |+.++++|.+..+ ++. +.|++.|++.++++++.. +|+..+
T Consensus 204 i~fY~klGf~~~~~y~~~d~~~~-----~~~~~~g~~~~~~--l~~y~~~Ii~~a~~~Gi~~~~~~----se~~~~~L~~ 272 (547)
T TIGR03103 204 IALYEKLGFRRIPVFALKRKNAI-----NERLFSGPAPEAD--LNPYARIIVDEARRRGIEVEVLD----AEGGLFRLSL 272 (547)
T ss_pred HHHHHHCCCEEeeEEEEeccCCc-----CcccccCCCcccc--cCHHHHHHHHHHHHcCCcEEEEC----CCCCEEEecC
Confidence 34446778888888887777655 8889998866544 777 899999999999999955 233222
Q ss_pred ---HHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccE
Q 041518 127 ---AQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGM 203 (765)
Q Consensus 127 ---a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv 203 (765)
+..+... +. .-+++.+++++.||..+|++|+++|||+|++.... +.+++.++++++| |+||||..|++|+||
T Consensus 273 g~~~~~~~~s-~~-~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~--~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv 347 (547)
T TIGR03103 273 GGRSIRCRES-LS-ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAG--NGEAVEAFLAEHG-AVVVKPVRGEQGKGI 347 (547)
T ss_pred CceEEEEEec-cC-CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEEC--CHHHHHHHHHHhC-CEEEEECCCCCCcCe
Confidence 1111111 11 12588999999999999999999999999998755 8888999999998 799999999999999
Q ss_pred EE-ECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEE----------------EEEEeccccEEEEEeeeccc
Q 041518 204 RI-VQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEV----------------QIFGDKYGKVLHLYERDCSV 266 (765)
Q Consensus 204 ~~-v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v----------------~v~~d~~g~vv~l~~r~~s~ 266 (765)
++ +++.++|.++++.+... ...+|+|+||+| +++.+ ++++|+++++..+.++....
T Consensus 348 ~v~v~~~~eL~~a~~~a~~~------~~~vlvEe~i~G-~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~ 420 (547)
T TIGR03103 348 SVDVRTPDDLEAAIAKARQF------CDRVLLERYVPG-EDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRR 420 (547)
T ss_pred EEecCCHHHHHHHHHHHHhc------CCcEEEEEeccC-CeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcC
Confidence 97 99999999999888653 358999999995 55544 45556555555544432211
Q ss_pred ccc-------------------------------ceee--------eeecCCCCCCHHHHHHHHHHHHHHHHHcCCCcee
Q 041518 267 QRR-------------------------------HQKI--------IEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAG 307 (765)
Q Consensus 267 ~~~-------------------------------~~k~--------~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~ 307 (765)
..+ .+.+ -.++.+..+++.+.+++.+.|.++++++|+ .++
T Consensus 421 ~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl-~~~ 499 (547)
T TIGR03103 421 RAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDI-PVV 499 (547)
T ss_pred ccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCC-CeE
Confidence 000 0000 011222245677889999999999999999 688
Q ss_pred EEEEEEECC-CCcEEEEEecccCC-ccccccceecCCCHHHHHHHHH
Q 041518 308 TVEFIVDTV-SDQFYFMEMNTRLQ-VEHPVTEMIVDQDLVEWQIRVA 352 (765)
Q Consensus 308 ~vEf~~~~~-~g~~~~iEiN~R~~-~~~~~~e~~tGvDl~~~~i~~a 352 (765)
.||++.++. ...+.|||+|.|++ ..| ..-|..+..+++.
T Consensus 500 GvD~i~~~~~~p~~~iiEvN~~Pgl~~h------~~~~~~~~~~d~l 540 (547)
T TIGR03103 500 GIDFLVPDVTGPDYVIIEANERPGLANH------EPQPTAERFIDLL 540 (547)
T ss_pred EEEEEeccCCCCCeEEEEecCCcccccc------CCCchHHHHHHHh
Confidence 899999741 22469999999998 333 1345666666655
No 72
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.88 E-value=1.5e-21 Score=197.91 Aligned_cols=186 Identities=20% Similarity=0.367 Sum_probs=137.9
Q ss_pred HHHHCCCCCCCccccCCCCHHH--HHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEE
Q 041518 157 IMGAAGVPLVPGYHGNEQDIDL--MKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILL 234 (765)
Q Consensus 157 ~l~~~Gvpvp~~~~~~~~s~~e--~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlV 234 (765)
+++++|||+|++......+... ..+....++||++|||..+++|.||.+|+|.+||..+++.+.+ + ++++||
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~-----~-~~~vlV 74 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFK-----Y-DDDVLV 74 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTT-----T-HSEEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhh-----h-cceEEE
Confidence 5789999999998776444433 3356788999999999999999999999999999999988764 2 579999
Q ss_pred ecccCCCeeEEEEEEEeccccEEEEEeeecc-----ccccc----eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Q 041518 235 EKYITQPRHIEVQIFGDKYGKVLHLYERDCS-----VQRRH----QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHN 305 (765)
Q Consensus 235 EeyI~ggrei~v~v~~d~~g~vv~l~~r~~s-----~~~~~----~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G 305 (765)
|+||+ |+|++|.+++++...+....+.... +...+ .......|+ .+++++.++|.+.|.++.++||++|
T Consensus 75 EefI~-G~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa-~l~~~~~~~i~~~a~~a~~~lg~~~ 152 (203)
T PF07478_consen 75 EEFIS-GREFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPA-DLSEELQEKIKEIAKKAFKALGCRG 152 (203)
T ss_dssp EE--S-SEEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS--SS-HHHHHHHHHHHHHHHHHTTTCS
T ss_pred Eeeec-ccceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 99997 7999999999777555555443221 11112 234555688 7999999999999999999999999
Q ss_pred eeEEEEEEECCCCcEEEEEecccCCcc-c---cccceecCCCHHHHHHHH
Q 041518 306 AGTVEFIVDTVSDQFYFMEMNTRLQVE-H---PVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 306 ~~~vEf~~~~~~g~~~~iEiN~R~~~~-~---~~~e~~tGvDl~~~~i~~ 351 (765)
.+.|||++++ +|++||+|+|+-+|.. + |..-...|+++.+++-++
T Consensus 153 ~~RiD~rv~~-~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 153 YARIDFRVDE-DGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp EEEEEEEEET-TTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred ceeEEEEecc-CCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 9999999997 8999999999999832 2 112224588877776554
No 73
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.87 E-value=8.4e-20 Score=199.08 Aligned_cols=331 Identities=18% Similarity=0.237 Sum_probs=235.3
Q ss_pred CCCHHHHHHHHHHhCCCEEEeCCCc-ccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCC
Q 041518 95 YLNGSSIVDAAIRTGAQAIHPGYGF-LSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNE 173 (765)
Q Consensus 95 yld~~~Il~~a~~~~~DaV~pg~g~-lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~ 173 (765)
..|.+++.++|+++++..|++|... |+ ..++..+...||+++||+.+++++..+|..+|++|.++|||+..|....
T Consensus 54 ~~d~~ala~f~~e~~I~lVvvGPE~PL~--~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft- 130 (788)
T KOG0237|consen 54 VADFEALASFCKEHNINLVVVGPELPLV--AGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFT- 130 (788)
T ss_pred hhhHHHHHHHHHHcceeEEEECCchhhh--hhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceeeeeC-
Confidence 3688999999999999999999731 22 4567889999999999999999999999999999999999999987766
Q ss_pred CCHHHHHHHHHHhC-CcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCC--CCcEEEecccCCCeeEEEEEEE
Q 041518 174 QDIDLMKSEAAKIG-YPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFG--INTILLEKYITQPRHIEVQIFG 250 (765)
Q Consensus 174 ~s~~e~~~~~~~ig-~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg--~~~vlVEeyI~ggrei~v~v~~ 250 (765)
+.+++..+++..+ .++|||+..-+.||||.+..+.+|.-++++.+...- .|| ...++|||+++ |.|+++-.|.
T Consensus 131 -~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~--~fg~AG~tvViEE~LE-GeEvS~laft 206 (788)
T KOG0237|consen 131 -DPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKK--VFGSAGKTVVIEELLE-GEEVSFLAFT 206 (788)
T ss_pred -CHHHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhh--hhccccceEehhhhcC-cceEEEEEEe
Confidence 8899999999999 569999999999999999999999999998887643 344 46899999999 5899998898
Q ss_pred eccccEEEEEeeeccccccceeeeee------------cCCCCCCHHHHHHHHHHHH----HHHH--HcCCCceeEEEEE
Q 041518 251 DKYGKVLHLYERDCSVQRRHQKIIEE------------APAPNVTHDFRALLGQAAV----SAAK--AVSYHNAGTVEFI 312 (765)
Q Consensus 251 d~~g~vv~l~~r~~s~~~~~~k~~e~------------~Pa~~l~~~~~~~l~~~a~----~i~~--alg~~G~~~vEf~ 312 (765)
|+. .+..+ +...+|.++.+. +|+|..++++.+.+.+... +-.+ .+.|.|+...-++
T Consensus 207 DG~-s~~~m-----p~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlM 280 (788)
T KOG0237|consen 207 DGY-SVRPL-----PPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLM 280 (788)
T ss_pred cCc-ccccC-----CcccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeE
Confidence 876 33333 344555554443 6888888887766554432 2222 3456699999999
Q ss_pred EECCCCcEEEEEecccCCcccccccee---cCCCHHHHHHHHHcCCCCCCCCCCcccceE-----EEEEEecccCCCCCC
Q 041518 313 VDTVSDQFYFMEMNTRLQVEHPVTEMI---VDQDLVEWQIRVANGEPLPLSQSEVPLLGH-----AFEARIYAENVPKGF 384 (765)
Q Consensus 313 ~~~~~g~~~~iEiN~R~~~~~~~~e~~---tGvDl~~~~i~~a~G~~l~~~~~~~~~~g~-----ai~~ri~ae~p~~~f 384 (765)
+++ + .|.+||.|.|+ +.|.++.+ ..-||++.++....|+--.. ++.|..+ .+++-.||++-.++
T Consensus 281 l~k-~-~P~vLEfN~RF--GDPEtQv~l~lLesDL~evi~a~~~~~L~~~---~i~w~~~sa~~VV~as~gYP~sy~KG- 352 (788)
T KOG0237|consen 281 LTK-D-GPKVLEFNVRF--GDPETQVLLPLLESDLAEVILACCNGRLDTV---DIVWSKKSAVTVVMASGGYPGSYTKG- 352 (788)
T ss_pred Eec-C-CccEEEEeccc--CCchhhhhHHHHHhHHHHHHHHHhhCCcccc---CccccccceEEEEEecCCCCCCCcCC-
Confidence 995 4 49999999999 67777654 46699999999888864221 2333223 23444455543321
Q ss_pred CCCCcceeEEeeCCCCCCcEEEEecccCCCeeCCccCCcceEEEEEeeEEeccccCHHHHH-------HHhcCcCcccCc
Q 041518 385 LPATGVLHHYHPVPVSSKAVRVETGVEQGDTVSMHYDPMIANLWYGAKTVAGVPTNINFLQ-------KLAKHRAFESGD 457 (765)
Q Consensus 385 ~p~~G~i~~~~~p~~~~~~vrv~~~v~~G~~v~~~~d~~~~~~i~~g~~i~g~~tn~~~l~-------~~~~~~~~~~~~ 457 (765)
-.|+.+..+. .++ .||- ..|.. .+++ ++++.|.++.+|+..-++|. ..+..=.|....
T Consensus 353 ----~~It~~~~~~-~~~-~rVF---HAGTs---~~ss---~vvTNGGRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~ 417 (788)
T KOG0237|consen 353 ----SIITGLPEAD-RPG-TRVF---HAGTS---LDSS---NVVTNGGRVLSVTATGDDLESAAETAYKAVQVISFSGKF 417 (788)
T ss_pred ----cccccCcccC-CCc-ceEE---ecccc---cccc---ceEecCceEEEEEecCchHHHHHHHHHHHheEEeecccc
Confidence 1333333333 234 4543 22332 2222 77777745555554444444 344445666655
Q ss_pred cccc
Q 041518 458 VETH 461 (765)
Q Consensus 458 ~~t~ 461 (765)
+.|+
T Consensus 418 yRkD 421 (788)
T KOG0237|consen 418 YRKD 421 (788)
T ss_pred ccch
Confidence 5554
No 74
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.86 E-value=2.9e-21 Score=229.93 Aligned_cols=255 Identities=24% Similarity=0.380 Sum_probs=192.3
Q ss_pred CCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE--------EEeCCCcccccHHHHHHHHHCCCcEECC
Q 041518 69 DADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA--------IHPGYGFLSESADFAQLCGDNGLTFIGP 140 (765)
Q Consensus 69 ~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da--------V~pg~g~lsE~~~~a~~~~~~Gl~~~Gp 140 (765)
+.+....+.+.+++.+.++|+. ..|+++|++.++++ +++|||+.++ .+...+.. ++
T Consensus 141 ~~~~~~~~~~~~~~~~~lgpst--------~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~------~i~~~~~~--~~ 204 (727)
T PRK14016 141 DLEAALARLRELDEDERLGPST--------AAIVDAAEARGIPYIRLGDGSLVQLGYGKYQR------RIQAAETD--QT 204 (727)
T ss_pred CHHHHHHHHHHHHHhcccCCCH--------HHHHHHHHHcCCCEEEeCCCCeEecCCcHHHH------HHHHhcCC--CC
Confidence 5567778889999999998833 58999999999988 9999998774 34444443 67
Q ss_pred cHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEE-ECChhHHHHHHHHH
Q 041518 141 PVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRI-VQSPNDFVDSFLGA 219 (765)
Q Consensus 141 ~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~-v~s~~el~~a~~~~ 219 (765)
+..++++++||..+|++|+++|||+|++.... +.+++.++++++|||+|+||..|++|+||++ +++.+|+.++++.+
T Consensus 205 s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~--s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a 282 (727)
T PRK14016 205 SAIAVDIACDKELTKRLLAAAGVPVPEGRVVT--SAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA 282 (727)
T ss_pred cHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeC--CHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999997654 8999999999999999999999999999998 99999999999887
Q ss_pred HHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeecc-------------------cccc---ce------
Q 041518 220 QREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCS-------------------VQRR---HQ------ 271 (765)
Q Consensus 220 ~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s-------------------~~~~---~~------ 271 (765)
... ...+|||+||+ ++++.+-++. |+++....|.-. -.++ |.
T Consensus 283 ~~~------~~~viVEe~I~-G~d~Rv~Vvg---g~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i 352 (727)
T PRK14016 283 SKE------SSDVIVERYIP-GKDHRLLVVG---GKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKI 352 (727)
T ss_pred HHh------CCeEEEEEecC-CceEEEEEEC---CEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCccccc
Confidence 653 36899999999 5677765542 345555443211 0010 00
Q ss_pred -------------------------eee--------eecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECC--
Q 041518 272 -------------------------KII--------EEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTV-- 316 (765)
Q Consensus 272 -------------------------k~~--------e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~-- 316 (765)
++. .++-+...++.+.+++.+.|.++++.+|+ +.+.||++.++-
T Consensus 353 ~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~ 431 (727)
T PRK14016 353 KLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISK 431 (727)
T ss_pred CCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCccc
Confidence 000 00112234566778899999999999999 888999998631
Q ss_pred ---CCcEEEEEecccCCccccc-cceecCCCHHHHHHHHH
Q 041518 317 ---SDQFYFMEMNTRLQVEHPV-TEMIVDQDLVEWQIRVA 352 (765)
Q Consensus 317 ---~g~~~~iEiN~R~~~~~~~-~e~~tGvDl~~~~i~~a 352 (765)
..+..++|+|..++..... .....+.|....++...
T Consensus 432 p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~L 471 (727)
T PRK14016 432 PLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDML 471 (727)
T ss_pred ccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHHh
Confidence 2347999999999732211 22335677777777764
No 75
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.86 E-value=2.3e-21 Score=219.27 Aligned_cols=313 Identities=17% Similarity=0.277 Sum_probs=263.8
Q ss_pred CCCEEEEEcCcHH-----------HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHH
Q 041518 36 RIEKILIANRGEI-----------AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDA 104 (765)
Q Consensus 36 ~~kkILI~g~G~~-----------a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~ 104 (765)
+.+|+||+|+|.. +...++++|+-|+.|+++..+-........+||..|.++ ...+.+-..
T Consensus 376 ~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflp--------vT~~~vt~v 447 (1435)
T KOG0370|consen 376 EVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLP--------VTPEYVTKV 447 (1435)
T ss_pred cccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEee--------cCHHHHHHH
Confidence 3589999998732 678899999999999999776655555566999999885 455778888
Q ss_pred HHHhCCCEEEeCCCccc-cc--HHH--HHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHH
Q 041518 105 AIRTGAQAIHPGYGFLS-ES--ADF--AQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLM 179 (765)
Q Consensus 105 a~~~~~DaV~pg~g~ls-E~--~~~--a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~ 179 (765)
.+...+|+|+.++|.-. =| ..+ .-.+++.+...+|.+.+++....|+..+.+.|.+.+.++.|+.... +.+++
T Consensus 448 i~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~--sie~a 525 (1435)
T KOG0370|consen 448 IKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPSEAVS--TIEEA 525 (1435)
T ss_pred HHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccchhhHh--HHHHH
Confidence 89999999998876421 11 112 2356788999999999999999999999999999999999987655 99999
Q ss_pred HHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEE
Q 041518 180 KSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHL 259 (765)
Q Consensus 180 ~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l 259 (765)
.++++++|||+|+.....-||.|--.++|++||.+....+... ...++||+-+.|-.|++.+++.|..++++.+
T Consensus 526 l~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~QilvekSlkGwkevEyevvrDa~~nciTv 599 (1435)
T KOG0370|consen 526 LEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQILVEKSLKGWKEVEYEVVRDAYDNCITV 599 (1435)
T ss_pred HHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc------CceeeehhhhccccceEEEEEeccccchhhh
Confidence 9999999999999999999999999999999999987776543 4799999999999999999999999898887
Q ss_pred Eeee--ccccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccc
Q 041518 260 YERD--CSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTE 337 (765)
Q Consensus 260 ~~r~--~s~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e 337 (765)
..-+ -+..-.....+-.+|+..++++....++..+.++.+++|..|-.++++.++|..-++++||+|+|++....+..
T Consensus 600 cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSrssaLAS 679 (1435)
T KOG0370|consen 600 CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSRSSALAS 679 (1435)
T ss_pred cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEeehhhhhc
Confidence 3211 11111223456678999999999999999999999999999999999999997778999999999999999999
Q ss_pred eecCCCHHHHHHHHHcCCCCCCCCCCc
Q 041518 338 MIVDQDLVEWQIRVANGEPLPLSQSEV 364 (765)
Q Consensus 338 ~~tGvDl~~~~i~~a~G~~l~~~~~~~ 364 (765)
.+||..|......+++|.+|+...+.+
T Consensus 680 kaTgypLAy~aAKlalg~~lpe~~n~V 706 (1435)
T KOG0370|consen 680 KATGYPLAYTAAKLALGIPLPELKNSV 706 (1435)
T ss_pred cCccCcHHHHHHHHhcCcccccCCccc
Confidence 999999999999999999998654433
No 76
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.86 E-value=2.1e-20 Score=183.79 Aligned_cols=166 Identities=23% Similarity=0.337 Sum_probs=134.5
Q ss_pred HHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecC-CCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEec
Q 041518 158 MGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTH-GGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEK 236 (765)
Q Consensus 158 l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~-g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEe 236 (765)
|+++|+|+|||.... +.+++.++++++|||+|+|+.. |..|+|..++++.+|+..+++.+ +.+++|+|+
T Consensus 1 l~~~gip~~~~~~i~--~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPYATID--SLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EEEEES--SHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCeEEEC--CHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 578999999998766 9999999999999999999554 55799999999999999998876 358999999
Q ss_pred ccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECC
Q 041518 237 YITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTV 316 (765)
Q Consensus 237 yI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~ 316 (765)
||+..+|+++.+.++.+|++..+-.. ...++++......+|+ .++++..+++.+++.+++++|+|.|++.|||++++
T Consensus 71 ~v~f~~EiSvivaR~~~G~~~~yp~~-en~~~~~il~~s~~Pa-~i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~- 147 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDGEIRFYPPV-ENVHRDGILHESIAPA-RISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTK- 147 (172)
T ss_dssp ---ESEEEEEEEEEETTSEEEEEEEE-EEEEETTEEEEEEESC-SS-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEET-
T ss_pred ccCCcEEEEEEEEEcCCCCEEEEcCc-eEEEECCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEec-
Confidence 99999999999999999986665332 2345556556667899 69999999999999999999999999999999998
Q ss_pred CCc-EEEEEecccCCcccccc
Q 041518 317 SDQ-FYFMEMNTRLQVEHPVT 336 (765)
Q Consensus 317 ~g~-~~~iEiN~R~~~~~~~~ 336 (765)
+|+ +|+-|+.||++....+|
T Consensus 148 ~g~~v~vNEiaPRpHnSGh~T 168 (172)
T PF02222_consen 148 DGDEVLVNEIAPRPHNSGHWT 168 (172)
T ss_dssp TSTEEEEEEEESS--GGGGGH
T ss_pred CCCEEEEEeccCCccCcccEe
Confidence 786 99999999998544433
No 77
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.83 E-value=1.3e-19 Score=183.86 Aligned_cols=297 Identities=14% Similarity=0.086 Sum_probs=207.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 38 EKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
.-|+|+|+....+.++|+..+.-+.+.++..+ .+...+++++......+.. .+--.+..+.++|++++-...+...
T Consensus 4 PgviilGgahgtlalARSfg~~~vpv~~ls~d-~plPt~Sr~vr~t~~w~gp---hd~gaiafLrd~Aekhglkg~LLva 79 (415)
T COG3919 4 PGVIILGGAHGTLALARSFGEEFVPVLALSAD-GPLPTYSRIVRVTTHWNGP---HDEGAIAFLRDFAEKHGLKGYLLVA 79 (415)
T ss_pred CceEEEcccchhHHHHHhhccccceEEEEecC-CCCcchhhhheeeeccCCC---CcccHHHHHHHHHhhcCcCceEEEe
Confidence 47899998887788899998888887777544 3333478888777665431 2334567889999998766433211
Q ss_pred Cccccc---HHHHHHH-HHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEe
Q 041518 118 GFLSES---ADFAQLC-GDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIK 193 (765)
Q Consensus 118 g~lsE~---~~~a~~~-~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVK 193 (765)
+...|. ....+.+ +...++ -|+....+.+.+|-.+++.+++.|+|.|.++.+. |..+ ....++-||+|+|
T Consensus 80 ~GDgev~lvSq~reeLSa~f~v~--lp~w~~l~wlceKPllY~ra~elgl~~P~Ty~v~--S~~d--~~~~el~FPvILK 153 (415)
T COG3919 80 CGDGEVLLVSQYREELSAFFEVP--LPDWALLRWLCEKPLLYNRAEELGLPYPKTYLVN--SEID--TLVDELTFPVILK 153 (415)
T ss_pred cCCceeeehHhhHHHHHHHhcCC--CCcHHHHHHHhhCcHHHHHHHHhCCCCcceEEec--chhh--hhhhheeeeEEec
Confidence 111222 1222222 333444 4699999999999999999999999999998765 5444 3456889999999
Q ss_pred ecCCCC-----CccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCee--EEEEEEEeccccEEEEEee---e
Q 041518 194 PTHGGG-----GKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRH--IEVQIFGDKYGKVLHLYER---D 263 (765)
Q Consensus 194 P~~g~G-----g~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggre--i~v~v~~d~~g~vv~l~~r---~ 263 (765)
|-.|+| -...+.+.|.+|+..++..+..+ .+.++++||+||+||.| ++...+.|....+..+..| +
T Consensus 154 P~mgg~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rq 229 (415)
T COG3919 154 PGMGGSVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQ 229 (415)
T ss_pred CCCCCcceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhc
Confidence 998885 34456788999999999988765 45799999999999866 3334445543333222111 1
Q ss_pred ccccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCC
Q 041518 264 CSVQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQD 343 (765)
Q Consensus 264 ~s~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvD 343 (765)
.+..-.+.....+.| + .+++.++++++++.+++.|...|||++|++||.+.++|+|||++. +...-.+.|+|
T Consensus 230 yPvdfgytst~vevv-----D--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~-wfgl~taaG~n 301 (415)
T COG3919 230 YPVDFGYTSTVVEVV-----D--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWR-WFGLVTAAGYN 301 (415)
T ss_pred CCcccccccEEEEec-----C--cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcc-eeeEEeccccc
Confidence 122112222222222 2 478899999999999999999999999999999999999999973 33333456999
Q ss_pred HHHHHHHHHcCCC
Q 041518 344 LVEWQIRVANGEP 356 (765)
Q Consensus 344 l~~~~i~~a~G~~ 356 (765)
|-..+.+...+.+
T Consensus 302 Lg~~Lwa~~~~~~ 314 (415)
T COG3919 302 LGRYLWADRINNE 314 (415)
T ss_pred ccceEEeeecCCc
Confidence 8877777766654
No 78
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.82 E-value=3.1e-19 Score=177.20 Aligned_cols=171 Identities=19% Similarity=0.317 Sum_probs=132.5
Q ss_pred cCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcE-EEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcC
Q 041518 149 GDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPI-LIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASF 227 (765)
Q Consensus 149 ~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~Pv-VVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~f 227 (765)
++|..+|++|+++|||++++.... +.+++.+++++.++|+ ||||..-.+|+||.++.|.+|..+++++.... ..|
T Consensus 1 ~SK~faK~fm~~~~IPTa~~~~f~--~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~f 76 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKYKVFT--DYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKF 76 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--EEEES--SHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STT
T ss_pred CCHHHHHHHHHHcCCCCCCeeEEC--CHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--ccc
Confidence 479999999999999999988766 9999999999999999 99999999999999999999999999998753 345
Q ss_pred C--CCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccccceee------------eeecCCCCCCHHHHHHHHH-
Q 041518 228 G--INTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKI------------IEEAPAPNVTHDFRALLGQ- 292 (765)
Q Consensus 228 g--~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~------------~e~~Pa~~l~~~~~~~l~~- 292 (765)
+ ...++||||+. |+|+++.++.|+. +++.+ +..++|.+. ...+|.|.+++++.+++.+
T Consensus 77 g~~~~~vvIEE~l~-G~E~S~~a~~dG~-~~~~l-----p~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~ 149 (194)
T PF01071_consen 77 GDAGSKVVIEEFLE-GEEVSLFALTDGK-NFVPL-----PPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEE 149 (194)
T ss_dssp CCCGSSEEEEE----SEEEEEEEEEESS-EEEEE-----EEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHH
T ss_pred CCCCCcEEEEeccC-CeEEEEEEEEcCC-eEEEC-----cchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHH
Confidence 5 47999999999 6999999999987 44444 233333333 2336888889988887776
Q ss_pred HHHHHHHHc-----CCCceeEEEEEEECCCCcEEEEEecccCCcccc
Q 041518 293 AAVSAAKAV-----SYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHP 334 (765)
Q Consensus 293 ~a~~i~~al-----g~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~ 334 (765)
+....+++| .|+|+..+.+++++ ++|++||.|.|+ +.|
T Consensus 150 I~~pt~~~l~~eg~~y~GvLy~glMlt~--~Gp~vlEfN~Rf--GDP 192 (194)
T PF01071_consen 150 ILEPTLKGLKKEGIPYRGVLYAGLMLTE--DGPKVLEFNVRF--GDP 192 (194)
T ss_dssp THHHHHHHHHHTT---EEEEEEEEEEET--TEEEEEEEESSG--STT
T ss_pred HHHHHHHHHHhcCCCcceeeeeeeEEeC--CCcEEEEEeCCC--CCC
Confidence 555555554 77899999999995 459999999999 455
No 79
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.79 E-value=2.7e-19 Score=175.27 Aligned_cols=157 Identities=22% Similarity=0.346 Sum_probs=88.9
Q ss_pred hcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcC
Q 041518 148 MGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASF 227 (765)
Q Consensus 148 ~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~f 227 (765)
|.||.+++++|+++|+|+|...... ... ...+|+|+||.+|.||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~--~~~-------~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDS--EPE-------PIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------E--ESS---------SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCccccc--ccc-------ccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 6899999999999999998332211 111 2368999999999999999999999988765432
Q ss_pred CCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccc--cccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHc-CCC
Q 041518 228 GINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSV--QRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAV-SYH 304 (765)
Q Consensus 228 g~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~--~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~ 304 (765)
..++|+||+ |.+++++++.++++..+....|...- ...+.......|+ .....+++.+++.++++++ |+.
T Consensus 63 ---~~i~Qe~i~-G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~---~~~~~~~~~~~~~~i~~~l~gl~ 135 (161)
T PF02655_consen 63 ---LRIVQEFIE-GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPA---DTPLKEEIIELARRIAEALPGLR 135 (161)
T ss_dssp -----EEEE----SEEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT--
T ss_pred ---ceEEeeeeC-CEEeEEEEEEeCCceEEEEechHhhccccceeeeccccccc---CCchHHHHHHHHHHHHHHcCCCe
Confidence 229999999 69999999998764433333332111 1123344455566 2344889999999999999 999
Q ss_pred ceeEEEEEEECCCCcEEEEEecccCCc
Q 041518 305 NAGTVEFIVDTVSDQFYFMEMNTRLQV 331 (765)
Q Consensus 305 G~~~vEf~~~~~~g~~~~iEiN~R~~~ 331 (765)
|...|||+++ ++++|+||||||+++
T Consensus 136 G~~giD~I~~--~~~~~viEINPR~t~ 160 (161)
T PF02655_consen 136 GYVGIDFILD--DGGPYVIEINPRFTG 160 (161)
T ss_dssp EEEEEEEEES--S-SEEEEEEESS--G
T ss_pred eeEeEEEEEe--CCcEEEEEEcCCCCC
Confidence 9999999999 578999999999973
No 80
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.79 E-value=8.6e-19 Score=166.66 Aligned_cols=72 Identities=38% Similarity=0.559 Sum_probs=69.3
Q ss_pred CCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 648 PPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 648 ~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
+...|+|||+|++++++|++||+|++||+|++||||||+++|.||.+|+|++|++++||.|+.||+|+.|++
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 457899999999999999999999999999999999999999999999999999999999999999999863
No 81
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=9.4e-18 Score=180.81 Aligned_cols=226 Identities=22% Similarity=0.356 Sum_probs=163.6
Q ss_pred hCCCEEEeCCCccccc-HHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHH-HH
Q 041518 108 TGAQAIHPGYGFLSES-ADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEA-AK 185 (765)
Q Consensus 108 ~~~DaV~pg~g~lsE~-~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~-~~ 185 (765)
...|++++..+..... ..+++.++..|.+++ ++++++..|+||..+-+++.++|+|+|++.... +.++...+. +.
T Consensus 77 ~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~--~~~~~~~~~~~~ 153 (318)
T COG0189 77 DELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITR--DPDEAAEFVAEH 153 (318)
T ss_pred ccCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEc--CHHHHHHHHHHh
Confidence 4679999775443322 456778999999988 899999999999999999999999999987655 766666655 55
Q ss_pred hCCcEEEeecCCCCCccEEEECChh-HHHHHHHHHHHHHHhcCCCCcEEEecccCCCe-eEEEEEEEeccccEEEEE--e
Q 041518 186 IGYPILIKPTHGGGGKGMRIVQSPN-DFVDSFLGAQREAAASFGINTILLEKYITQPR-HIEVQIFGDKYGKVLHLY--E 261 (765)
Q Consensus 186 ig~PvVVKP~~g~Gg~Gv~~v~s~~-el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggr-ei~v~v~~d~~g~vv~l~--~ 261 (765)
+|||+|+||.+|++|+||+++++.+ ++.+.++..... +...+|+|+||+-+. ..-.-++.| +.++... .
T Consensus 154 ~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~y~~~ 226 (318)
T COG0189 154 LGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGG--GEVVAIYALA 226 (318)
T ss_pred cCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeC--CEEeEEeeec
Confidence 6899999999999999999999999 888888777642 224699999999654 333333333 3444432 2
Q ss_pred eeccc--cccc-eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccce
Q 041518 262 RDCSV--QRRH-QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEM 338 (765)
Q Consensus 262 r~~s~--~~~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~ 338 (765)
|-+.- .|.+ .......|. .++ +++.+.|.++++++|+ +...||++.+ ++++|++|+|..+. +...++.
T Consensus 227 R~~~~~~~R~N~a~Gg~~e~~-~l~----~e~~elA~kaa~~lGl-~~~GVDiie~--~~g~~V~EVN~sP~-~~~~i~~ 297 (318)
T COG0189 227 RIPASGDFRSNLARGGRAEPC-ELT----EEEEELAVKAAPALGL-GLVGVDIIED--KDGLYVTEVNVSPT-GKGEIER 297 (318)
T ss_pred cccCCCCceeecccccccccc-CCC----HHHHHHHHHHHHHhCC-eEEEEEEEec--CCCcEEEEEeCCCc-cccchhh
Confidence 21100 0001 011111233 344 5678999999999998 8999999999 56699999999664 4455666
Q ss_pred ecCCCHHHHHHHHH
Q 041518 339 IVDQDLVEWQIRVA 352 (765)
Q Consensus 339 ~tGvDl~~~~i~~a 352 (765)
.+|+|....+++..
T Consensus 298 ~~g~~~~~~~~~~i 311 (318)
T COG0189 298 VTGVNIAGLIIDAI 311 (318)
T ss_pred hcCCchHHHHHHHH
Confidence 78888888877754
No 82
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.77 E-value=8.3e-18 Score=169.34 Aligned_cols=183 Identities=23% Similarity=0.394 Sum_probs=110.2
Q ss_pred hcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHh-CCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhc
Q 041518 148 MGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKI-GYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAAS 226 (765)
Q Consensus 148 ~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~i-g~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~ 226 (765)
+.||..+.++|+++|||+|++.... +.+++.++.+.+ ++|+|+||..|+.|+||.++++.+++...++.....
T Consensus 1 a~dK~~~~~~l~~~gipvP~t~~~~--~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~---- 74 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPETRVTN--SPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL---- 74 (190)
T ss_dssp -HBHHHHHHHHHHTT-----EEEES--SHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---------
T ss_pred CCCHHHHHHHHHHCCcCCCCEEEEC--CHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc----
Confidence 3699999999999999999987765 899999999999 899999999999999999999999999888765432
Q ss_pred CCCCcEEEecccCCC--eeEEEEEEEeccccEEEEEeeecc---ccccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHc
Q 041518 227 FGINTILLEKYITQP--RHIEVQIFGDKYGKVLHLYERDCS---VQRRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAV 301 (765)
Q Consensus 227 fg~~~vlVEeyI~gg--rei~v~v~~d~~g~vv~l~~r~~s---~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al 301 (765)
...+++|+||+.. +++.|-+++ ++++....|.-. +...........|. . +.+++.+.+.++++++
T Consensus 75 --~~~~~~Q~fI~~~~g~d~Rv~Vig---~~vv~a~~r~~~~~d~r~n~~~g~~~~~~-~----l~~e~~~~a~~~~~~l 144 (190)
T PF08443_consen 75 --ENPILVQEFIPKDGGRDLRVYVIG---GKVVGAYRRSSPEGDFRTNLSRGGKVEPY-D----LPEEIKELALKAARAL 144 (190)
T ss_dssp --TTT-EEEE----SS---EEEEEET---TEEEEEEE------------------EE---------HHHHHHHHHHHHHT
T ss_pred --cCcceEeccccCCCCcEEEEEEEC---CEEEEEEEEecCcccchhhhccCceEEEe-c----CCHHHHHHHHHHHHHh
Confidence 4688999999965 478888774 355655444311 11111111111233 2 3357888999999999
Q ss_pred CCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHH
Q 041518 302 SYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 302 g~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~ 351 (765)
|+ ..+.||++.+ ++++||+|+|+.++ ...++..+|+|+.+.+++.
T Consensus 145 gl-~~~giDi~~~--~~~~~v~EvN~~~~--~~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 145 GL-DFAGIDILDT--NDGPYVLEVNPNPG--FRGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp T--SEEEEEEEEE--TTEEEEEEEETT-----TTHHHHH---HHHHHHHH
T ss_pred CC-CEEEEEEEec--CCCeEEEEecCCch--HhHHHHHHCcCHHHHHHhh
Confidence 98 7889997666 56799999999995 5567788999999988764
No 83
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.76 E-value=2.2e-17 Score=158.33 Aligned_cols=144 Identities=28% Similarity=0.403 Sum_probs=98.1
Q ss_pred EEEEECCCceEEEEEEEEEeCCceEEEEECCEEEEEEEEEeecccceEEEEEeCCeeEEEEEecCCCCCCc-cccccc--
Q 041518 563 YLIEMGEDGSYISEVKATYLGEHKFRVEFDVVSMDVHLAVYNKGRIKHIHAWHGLHHHHFKQKLGLELPDE-DETQHK-- 639 (765)
Q Consensus 563 ~~v~~~~~~~~~v~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~-- 639 (765)
+.|.+|+ ..+++.+ .++....|.+++||+.|.+.+...+ .... ..... ... +.+...... ......
T Consensus 4 ~~~~~~g-~~~~v~v--~~~~~~~~~itvnG~~y~V~vee~~----~~~~--~~~~~-~~~-~~~~~~p~~~~~p~~~~~ 72 (153)
T PRK05641 4 VKVIVDG-VEYEVEV--EELGPGKFRVSFEGKTYEVEAKGLG----IDLS--AVQEQ-VPT-PAPAPAPAVPSAPTPVAP 72 (153)
T ss_pred EEEEECC-EEEEEEE--EeecCccEEEEECCEEEEEEEEEcc----cccc--ccccc-ccc-cccccCcccccCcccccc
Confidence 4555666 6666665 4555667888889999988875533 1110 01111 000 000000000 000000
Q ss_pred -ccc-ccCCCCCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 640 -TSF-ETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 640 -~~~-~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
... .....+...|+|||+|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.+++++.||.|..|++|++|
T Consensus 73 p~~~~~~~~~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 73 AAPAPAPASAGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred cCccccCCCCCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 000 112235678999999999999999999999999999999999999999999999999999999999999999987
No 84
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.72 E-value=7.8e-17 Score=149.79 Aligned_cols=71 Identities=42% Similarity=0.665 Sum_probs=68.5
Q ss_pred CCCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 647 GPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 647 ~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
.+...|+|||+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.+++++.||.|..|++|++|
T Consensus 59 ~~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 59 AGADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999987
No 85
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.68 E-value=1.2e-16 Score=134.49 Aligned_cols=69 Identities=28% Similarity=0.510 Sum_probs=66.5
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
..|+|||+|+|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 348999999999999999999999999999999999999999999999999999999999999999874
No 86
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=151.14 Aligned_cols=193 Identities=19% Similarity=0.288 Sum_probs=144.9
Q ss_pred HHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccE
Q 041518 124 ADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGM 203 (765)
Q Consensus 124 ~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv 203 (765)
..+.+..++. ...+|+++++++.+.||.++.+.++.+ +++|+++... ..+--+|+||++|.||.|+
T Consensus 89 y~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~------------~~~~k~ViKp~dgCgge~i 154 (307)
T COG1821 89 YSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTREWA------------EEPKKYVIKPADGCGGEGI 154 (307)
T ss_pred HHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccccc------------cCCceEEecccccCCccee
Confidence 5566777777 667899999999999999999999999 9999876321 2344699999999999999
Q ss_pred EEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeec-cccccceeeeeecCCCCC
Q 041518 204 RIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDC-SVQRRHQKIIEEAPAPNV 282 (765)
Q Consensus 204 ~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~-s~~~~~~k~~e~~Pa~~l 282 (765)
.+..+..+ -.|+|+||+ |.|.+|+ +.+|+ .+..+.-.+. -..........+.++ ..
T Consensus 155 ~~~~~~pd-------------------~~i~qEfIe-G~~lSVS-L~~GE-kv~pLsvNrQfi~~~~~~~~y~gg~~-pi 211 (307)
T COG1821 155 LFGRDFPD-------------------IEIAQEFIE-GEHLSVS-LSVGE-KVLPLSVNRQFIIFAGSELVYNGGRT-PI 211 (307)
T ss_pred eccCCCcc-------------------hhhHHHhcC-CcceEEE-EecCC-ccccceechhhhhhccceeeeccCcC-CC
Confidence 98877655 257899999 6899999 55554 3444421110 000111122334555 36
Q ss_pred CHHHHHHHHHHHHHHHHHcC-CCceeEEEEEEECCCCcEEEEEecccCCccccccc--eecCCCHHHHHHHHHcCCCCC
Q 041518 283 THDFRALLGQAAVSAAKAVS-YHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTE--MIVDQDLVEWQIRVANGEPLP 358 (765)
Q Consensus 283 ~~~~~~~l~~~a~~i~~alg-~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e--~~tGvDl~~~~i~~a~G~~l~ 358 (765)
+.++.+++.+.|.++++.++ +.|.+.||+++. ++||+||||||+. .|+.- .+++-++.+++++-..|.-+.
T Consensus 212 ~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls---D~pYvIEINpR~T--Tp~vg~sr~~~~sv~~LLl~~~~g~~~~ 285 (307)
T COG1821 212 DHELKREAFEEAIRAVECIPGLNGYVGVDLVLS---DEPYVIEINPRPT--TPTVGLSRVTPESVAELLLEGPTGKVLR 285 (307)
T ss_pred CcHHHHHHHHHHHHHHHhhccccceeeEEEEec---CCcEEEEecCCCC--cceeeeeccccHHHHHHHhcCccccccc
Confidence 78999999999999999996 889999999997 4699999999994 55443 458888888888888777544
No 87
>PRK12458 glutathione synthetase; Provisional
Probab=99.67 E-value=7.4e-15 Score=160.57 Aligned_cols=279 Identities=13% Similarity=0.062 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCC--cCcCCCCHHHHHHHH-------HHhCCCEEEeC
Q 041518 46 GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPP--ARLSYLNGSSIVDAA-------IRTGAQAIHPG 116 (765)
Q Consensus 46 G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~--~~~syld~~~Il~~a-------~~~~~DaV~pg 116 (765)
.....+++.+|.++|+++..+....-........+.....+.... ..+.+. ...... .-..+|+|++.
T Consensus 10 ~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~d~V~~R 86 (338)
T PRK12458 10 TDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENFL---SFLKKAEFKKERLPLAGFDVIFLR 86 (338)
T ss_pred CchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccchh---hHhhccccccccCchhhCCEEEEe
Confidence 345678999999999998765433211110111111111121100 001000 111111 01357999986
Q ss_pred C--CcccccHHHH--------HHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHh
Q 041518 117 Y--GFLSESADFA--------QLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKI 186 (765)
Q Consensus 117 ~--g~lsE~~~~a--------~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~i 186 (765)
- .+..+...+. ..++..|++++ +++++++.+.||..+.++++ +++|++... .+.+++.+++++.
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~v~--~~~~~~~~~~~~~ 160 (338)
T PRK12458 87 ANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTHIS--RNKEYIREFLEES 160 (338)
T ss_pred CCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEEEe--CCHHHHHHHHHHc
Confidence 3 2221111222 23356788777 89999999999999987665 678887544 3788899999889
Q ss_pred CCc-EEEeecCCCCCccEEEECChhH--HHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEE------
Q 041518 187 GYP-ILIKPTHGGGGKGMRIVQSPND--FVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVL------ 257 (765)
Q Consensus 187 g~P-vVVKP~~g~Gg~Gv~~v~s~~e--l~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv------ 257 (765)
++| +|+||..|.||+||+++++.++ +...++.... ...+++|+||++..+.++.++.- +|+++
T Consensus 161 ~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv-~g~~v~~~g~~ 232 (338)
T PRK12458 161 PGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL-NGEPLERDGHY 232 (338)
T ss_pred CCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE-CCEEEeeccce
Confidence 765 9999999999999999987764 5555544322 35899999998543344444432 34566
Q ss_pred EEEeeeccc--cccc-eeeeeecCCCCCCHHHHHHHHHHHHHHHHHc---CCCceeEEEEEEECCCCcEEEEEecccCCc
Q 041518 258 HLYERDCSV--QRRH-QKIIEEAPAPNVTHDFRALLGQAAVSAAKAV---SYHNAGTVEFIVDTVSDQFYFMEMNTRLQV 331 (765)
Q Consensus 258 ~l~~r~~s~--~~~~-~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al---g~~G~~~vEf~~~~~~g~~~~iEiN~R~~~ 331 (765)
+...|.... .|.+ .......+. .++ +++.++|.+++.++ |+ ..+.||++- .+++|||++-++
T Consensus 233 ~a~~R~~~~~d~RsN~~~Gg~~~~~-~l~----~~~~~ia~~~~~~l~~~GL-~~~gVDli~------~~l~EIN~~sp~ 300 (338)
T PRK12458 233 AAMRRVPAGGDVRSNVHAGGSVVKH-TLT----KEELELCEAIRPKLVRDGL-FFVGLDIVG------DKLVEVNVFSPG 300 (338)
T ss_pred eEEEEecCCCCeeecccCCCcccCc-CCC----HHHHHHHHHHHHHHhhcCC-eEEeEEEEC------CEEEEEeCCCcc
Confidence 554432111 0100 000111233 344 44556666665555 65 578899972 258999999776
Q ss_pred cccccceecCCCHHHHHHHHHc
Q 041518 332 EHPVTEMIVDQDLVEWQIRVAN 353 (765)
Q Consensus 332 ~~~~~e~~tGvDl~~~~i~~a~ 353 (765)
+.+..+..+|+|+....++...
T Consensus 301 g~~~~~~~~g~d~a~~i~~~i~ 322 (338)
T PRK12458 301 GLTRINKLNKIDFVEDIIEALE 322 (338)
T ss_pred hHHHHHHHhCCCHHHHHHHHHH
Confidence 7778888899999999988763
No 88
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.66 E-value=1.1e-15 Score=175.92 Aligned_cols=75 Identities=36% Similarity=0.648 Sum_probs=70.9
Q ss_pred CCCCCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 645 ATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 645 ~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
+..+++.|.|||||+|++|+|++||.|++||+|++||||||+++|+||.+|+|.++.+++|+.|..|++|++|+.
T Consensus 521 ~~~~~~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 521 NKIGPGDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred CCCCCCeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 345567899999999999999999999999999999999999999999999999999999999999999999964
No 89
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.65 E-value=8e-15 Score=178.29 Aligned_cols=201 Identities=23% Similarity=0.351 Sum_probs=152.9
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEE-ECChhHHHHHHHH
Q 041518 140 PPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRI-VQSPNDFVDSFLG 218 (765)
Q Consensus 140 p~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~-v~s~~el~~a~~~ 218 (765)
.+..+++++.||..+|++|+++|||+|++.... +.+++.++++++|||+|+||.+|++|+||.+ +++.+++.++++.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~--s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~ 280 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQ--SAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEA 280 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEEC--CHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHH
Confidence 478899999999999999999999999987655 8999999999999999999999999999998 9999999999988
Q ss_pred HHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccc-------------------ccc---ceeee--
Q 041518 219 AQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSV-------------------QRR---HQKII-- 274 (765)
Q Consensus 219 ~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~-------------------~~~---~~k~~-- 274 (765)
+... +..+|||+||+ |+|+.+-++. |+++....|.-.. .++ |.+..
T Consensus 281 a~~~------~~~vlVEefI~-G~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~ 350 (864)
T TIGR02068 281 AVEE------SSGVIVERFIT-GRDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTK 350 (864)
T ss_pred HHhh------CCcEEEEEecc-CCEEEEEEEC---CEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccc
Confidence 7643 36899999999 5899887663 4677765554221 010 10000
Q ss_pred -------------------------------------eecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECC-
Q 041518 275 -------------------------------------EEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTV- 316 (765)
Q Consensus 275 -------------------------------------e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~- 316 (765)
.++-+...++++.++..+.|.++++++|+ ..+.||++...-
T Consensus 351 i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~~~gl-~i~gvD~i~~di~ 429 (864)
T TIGR02068 351 IRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAKIIGL-DIAGVDIVTEDIS 429 (864)
T ss_pred cCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHHHhCC-CeEEEEEEecCCC
Confidence 01122234677888999999999999999 566699988521
Q ss_pred ----CCcEEEEEecccCC-ccccccceecCCCHHHHHHHHHc
Q 041518 317 ----SDQFYFMEMNTRLQ-VEHPVTEMIVDQDLVEWQIRVAN 353 (765)
Q Consensus 317 ----~g~~~~iEiN~R~~-~~~~~~e~~tGvDl~~~~i~~a~ 353 (765)
..+..+||+|+.++ ..|..-..-.+.++...+++...
T Consensus 430 ~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 430 RPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred CCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 23468999999998 33433333457777888877764
No 90
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.64 E-value=9.6e-15 Score=173.81 Aligned_cols=199 Identities=22% Similarity=0.270 Sum_probs=142.1
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHH-hCCcEEEeecCCCCCccEEEE---CChhHHHHH
Q 041518 140 PPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAK-IGYPILIKPTHGGGGKGMRIV---QSPNDFVDS 215 (765)
Q Consensus 140 p~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~-ig~PvVVKP~~g~Gg~Gv~~v---~s~~el~~a 215 (765)
.+..++.+|+||..+|++|+++|||+|++.... +.+++.+.+.. .|||+||||..|++|+||.++ .+.+++.++
T Consensus 478 ~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~--~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A 555 (752)
T PRK02471 478 DNYISPLIMENKVVTKKILAEAGFPVPAGDEFT--SLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKA 555 (752)
T ss_pred CHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEc--CHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHH
Confidence 355678889999999999999999999987654 77887777766 489999999999999999986 467888888
Q ss_pred HHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeecc-cc------------------cc---ceee
Q 041518 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCS-VQ------------------RR---HQKI 273 (765)
Q Consensus 216 ~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s-~~------------------~~---~~k~ 273 (765)
++.+... +..+||||||+ |+||.+-++. |+++....|.-. +. +| |.+.
T Consensus 556 ~~~a~~~------~~~vlVEEfI~-G~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~ 625 (752)
T PRK02471 556 LEIAFRE------DSSVLVEEFIV-GTEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTP 625 (752)
T ss_pred HHHHHhc------CCcEEEEeccc-CCEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccccc
Confidence 8776532 46899999999 6899998873 356666554211 00 00 0000
Q ss_pred e--------------------e-------------------ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEE
Q 041518 274 I--------------------E-------------------EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVD 314 (765)
Q Consensus 274 ~--------------------e-------------------~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~ 314 (765)
. + ++-+..+++.+.+...+.|.++++++|+. .+.||++..
T Consensus 626 l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~ 704 (752)
T PRK02471 626 LEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIP 704 (752)
T ss_pred ccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeC
Confidence 0 0 01122466788899999999999999986 556999986
Q ss_pred CCC-----C--cEEEEEecccCCc-cccccceecCCCHHHHHHHH
Q 041518 315 TVS-----D--QFYFMEMNTRLQV-EHPVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 315 ~~~-----g--~~~~iEiN~R~~~-~~~~~e~~tGvDl~~~~i~~ 351 (765)
.-+ . +..|||+|.+++. .|..--.-...|+.+.+++.
T Consensus 705 di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d~ 749 (752)
T PRK02471 705 DLTQPASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILDK 749 (752)
T ss_pred CCcccccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHHH
Confidence 311 2 5789999999983 33222223455666666654
No 91
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.63 E-value=7.5e-15 Score=172.07 Aligned_cols=199 Identities=20% Similarity=0.231 Sum_probs=142.6
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHh-CCcEEEeecCCCCCccEEEECC---hhHHHHH
Q 041518 140 PPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKI-GYPILIKPTHGGGGKGMRIVQS---PNDFVDS 215 (765)
Q Consensus 140 p~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~i-g~PvVVKP~~g~Gg~Gv~~v~s---~~el~~a 215 (765)
.+..++.+|.||..+|++|+++|||+|++.... +.+++.+....+ +||+||||.+|++|+||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~--~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFS--SQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEEC--CHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 367788999999999999999999999987654 666776666666 7999999999999999999876 6788888
Q ss_pred HHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeecc-------------------cccc---ce--
Q 041518 216 FLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCS-------------------VQRR---HQ-- 271 (765)
Q Consensus 216 ~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s-------------------~~~~---~~-- 271 (765)
++.+.+. +..+|||+||+ |+||.+.|+.+ +++.+..|.-. -.+| |.
T Consensus 543 l~~A~~~------~~~VLVEefI~-G~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~p 612 (737)
T TIGR01435 543 LNIAFSE------DSSVIIEEFLP-GTEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKP 612 (737)
T ss_pred HHHHHhc------CCeEEEEeccc-CCEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCC
Confidence 8766532 46899999999 68999988853 45555443100 0000 00
Q ss_pred --ee---------------ee-------------------ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEC
Q 041518 272 --KI---------------IE-------------------EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDT 315 (765)
Q Consensus 272 --k~---------------~e-------------------~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~ 315 (765)
++ .+ ++-+..+++.+.+...++|+++++++|+. .+.||++...
T Consensus 613 l~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~d 691 (737)
T TIGR01435 613 LEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPD 691 (737)
T ss_pred cccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecC
Confidence 00 00 01122567788899999999999999996 8889999863
Q ss_pred CC-------CcEEEEEecccCCc-cccccceecCCCHHHHHHHH
Q 041518 316 VS-------DQFYFMEMNTRLQV-EHPVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 316 ~~-------g~~~~iEiN~R~~~-~~~~~e~~tGvDl~~~~i~~ 351 (765)
-+ ....|||+|.+++. .|..--.-.+-|+...+++.
T Consensus 692 i~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild~ 735 (737)
T TIGR01435 692 ETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIKF 735 (737)
T ss_pred CCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHHh
Confidence 11 22679999999983 33322233455666665554
No 92
>PRK06748 hypothetical protein; Validated
Probab=99.62 E-value=2.1e-15 Score=128.76 Aligned_cols=70 Identities=26% Similarity=0.421 Sum_probs=65.9
Q ss_pred cccCCCcceEEEEEcCCCCeecCCCeEEEEEec-ceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 651 SVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM-KMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam-Km~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
.|+|||||+|.+|+|++||.|++||+|++||+| |+..+|.||.+|+|.++++++||.|..|++|+.|+++
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRDD 76 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEECC
Confidence 589999999999999999999999999999996 5666999999999999999999999999999999643
No 93
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.61 E-value=2.1e-15 Score=126.53 Aligned_cols=69 Identities=39% Similarity=0.622 Sum_probs=66.8
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
+.|.|||+|+|++|++++||.|++||+|+++|+|||+.++.||.+|+|.++++++||.|..|++|++|+
T Consensus 2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 458999999999999999999999999999999999999999999999999999999999999999885
No 94
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.60 E-value=1e-13 Score=149.39 Aligned_cols=228 Identities=16% Similarity=0.182 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC-CCcccccHHH
Q 041518 48 IAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG-YGFLSESADF 126 (765)
Q Consensus 48 ~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg-~g~lsE~~~~ 126 (765)
+...++..|++.|+.++.++.+.+-. .+...|+|+-- ++........
T Consensus 37 ~~~~l~~~~~~~Gi~~v~Id~~~pl~--------------------------------~qgpfDvilhK~~~~~~~~~~~ 84 (328)
T PLN02941 37 LQPSLEALARSKGIDLVAIDPSRPLS--------------------------------EQGPFDVILHKLYGKEWRQQLE 84 (328)
T ss_pred hhHHHHHHHHHCCCeEEEecCCCCcc--------------------------------ccCCcCEEEEecCCHHHHHHHH
Confidence 35668999999999999987552110 01123444422 1100011223
Q ss_pred HHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCC-------CCCCCccccCCCCHHHHH---HHHHHhCCcEEEeecC
Q 041518 127 AQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAG-------VPLVPGYHGNEQDIDLMK---SEAAKIGYPILIKPTH 196 (765)
Q Consensus 127 a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~G-------vpvp~~~~~~~~s~~e~~---~~~~~ig~PvVVKP~~ 196 (765)
....+..|++++ +++++++.+.||..|.+++.++| ||+|+++.+. +.+.+. .....++||+|+||..
T Consensus 85 ~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~--~~~~al~~~~~~~~l~~P~V~KPl~ 161 (328)
T PLN02941 85 EYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVY--DDESSIPDAVALAGLKFPLVAKPLV 161 (328)
T ss_pred HHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEc--CHHHHHHHHHHHhcCCCCEEEeecc
Confidence 455677889887 89999999999999999999999 9999988765 554433 3346899999999999
Q ss_pred C---CCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccC-CCeeEEEEEEEeccccEEEEEeeeccccccc--
Q 041518 197 G---GGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYIT-QPRHIEVQIFGDKYGKVLHLYERDCSVQRRH-- 270 (765)
Q Consensus 197 g---~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~-ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~-- 270 (765)
| +.|++|.++.++++|.. . ..++++||||+ +++.|-|-|++|. + ....| .+...-.
T Consensus 162 g~Gss~gh~m~lv~~~~~L~~------------l-~~p~~lQEfVnh~g~d~RVfVvGd~---v-~~~~R-~S~~n~~~~ 223 (328)
T PLN02941 162 ADGSAKSHKMSLAYDQEGLSK------------L-EPPLVLQEFVNHGGVLFKVYVVGDY---V-KCVRR-FSLPDVSEE 223 (328)
T ss_pred cCCCccccceEEecCHHHHHh------------c-CCcEEEEEecCCCCEEEEEEEECCE---E-EEEEe-cCCcccccc
Confidence 9 78999999999988776 1 34799999996 4678888888654 2 23222 1110000
Q ss_pred -eeeeee----------------c------CCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCC-CcEEEEEec
Q 041518 271 -QKIIEE----------------A------PAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVS-DQFYFMEMN 326 (765)
Q Consensus 271 -~k~~e~----------------~------Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~-g~~~~iEiN 326 (765)
.....+ . |. .......+++.+++.++.+++|+ +.++||++.+..+ ++++++|||
T Consensus 224 ~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~-~~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~~~~~~VidVN 301 (328)
T PLN02941 224 ELSSAEGVLPFPRVSNAAASADDADNGGLDPE-VAELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGTGDRYYVIDIN 301 (328)
T ss_pred cccccccccccccccccccccccccccccccc-cccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCCCCceEEEEec
Confidence 000000 0 00 01112345799999999999999 8999999999632 479999999
Q ss_pred ccCC
Q 041518 327 TRLQ 330 (765)
Q Consensus 327 ~R~~ 330 (765)
.-++
T Consensus 302 ~fP~ 305 (328)
T PLN02941 302 YFPG 305 (328)
T ss_pred CCCc
Confidence 9986
No 95
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.59 E-value=2.4e-15 Score=127.53 Aligned_cols=67 Identities=37% Similarity=0.654 Sum_probs=64.1
Q ss_pred cccCCCcceEEE------EEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 651 SVLSPMAGLVVK------VLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 651 ~v~ap~~G~v~~------~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
.|++|++|.+.+ |+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 478999998777 9999999999999999999999999999999999999999999999999999986
No 96
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.58 E-value=1.9e-14 Score=166.88 Aligned_cols=126 Identities=32% Similarity=0.454 Sum_probs=99.4
Q ss_pred eEEEEECCEEEEEEEEEeecccceEEEEEeCCeeEEEEEecCCCCCCccccccccccccCCCCCCcccCCCcceEEEEEc
Q 041518 586 KFRVEFDVVSMDVHLAVYNKGRIKHIHAWHGLHHHHFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLA 665 (765)
Q Consensus 586 ~l~~~~~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v 665 (765)
.+.++++|+.|.+.+...+..+...+.+..+|+.+.+...+..... ....+.+..+..|+|||+|+|++|+|
T Consensus 467 ~~~v~i~Gk~~~i~~~~~g~~~~r~~~~~~ng~~~~v~v~d~~~~~--------~~~~~~~~~~~~V~Ap~~G~v~~~~V 538 (592)
T PRK09282 467 EFKVEVDGEKYEVKIEGVKAEGKRPFYLRVDGMPEEVVVEPLKEIV--------VGGRPRASAPGAVTSPMPGTVVKVKV 538 (592)
T ss_pred EEEEEECCEEEEEEEeeccCCCcceEEEEecCceeeeeccCccccc--------ccccCCCCCCceEeCCCcEEEEEEEe
Confidence 3555666777776665554211245666778888777766554320 00134456678899999999999999
Q ss_pred CCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 666 NDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 666 ~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
++||.|++||+|++||+|||+++|+||.+|+|+++.+++|+.|..|++|++|++
T Consensus 539 ~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 539 KEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999999864
No 97
>PRK05246 glutathione synthetase; Provisional
Probab=99.54 E-value=1e-12 Score=142.93 Aligned_cols=275 Identities=14% Similarity=0.129 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCccccc-cc-EEEEcCCCCcCcCCCCHH--HHHHHHHHhCCCEEEeCCCc--cc
Q 041518 48 IAYRIMRTAKRLGIRTVAVYSDADRDSLHVKS-AD-EAIRIGPPPARLSYLNGS--SIVDAAIRTGAQAIHPGYGF--LS 121 (765)
Q Consensus 48 ~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~-aD-~~~~i~~~~~~~syld~~--~Il~~a~~~~~DaV~pg~g~--ls 121 (765)
...+++++++++|++++.+... +-.....+. +. ..+.+... ...+.... ....+ ...|+|++..+. ..
T Consensus 20 st~~l~~aa~~~G~~v~~~~~~-dl~~~~~~i~~~~~~~~~~~~--~~~w~~~~~~~~~~l---~~~D~v~~R~~~~~~~ 93 (316)
T PRK05246 20 STFAMMLEAQRRGHELFYYEPD-DLSLRGGEVVARARPLTVRDD--KGDWYELGEEQRLPL---ADFDVILMRKDPPFDM 93 (316)
T ss_pred hHHHHHHHHHHcCCEEEEEehh-hcEEECCEEEEEEEEEEeccC--CccceeccccccCcc---ccCCEEEEcCCCCCCh
Confidence 3578999999999998776533 211111110 10 00111111 11111100 00111 247999976322 11
Q ss_pred c---cHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCC
Q 041518 122 E---SADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGG 198 (765)
Q Consensus 122 E---~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~ 198 (765)
+ ...+.+.++..|++++ ++++++..+.||..+.+++. ++|++... .+.+++.++.++.+ |+|+||..|+
T Consensus 94 ~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~~~--~~~~~~~~~~~~~~-~vVlKP~~G~ 165 (316)
T PRK05246 94 EYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTLVT--RDKAEIRAFRAEHG-DIILKPLDGM 165 (316)
T ss_pred HHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEEEe--CCHHHHHHHHHHCC-CEEEEECCCC
Confidence 1 1235667777899887 88999999999999988765 78887543 48889999999888 9999999999
Q ss_pred CCccEEEECC-hhHHHHHHHHHHHHHHhcCCCCcEEEecccCC--CeeEEEEEEEeccccEEE-EEeeecc---ccccce
Q 041518 199 GGKGMRIVQS-PNDFVDSFLGAQREAAASFGINTILLEKYITQ--PRHIEVQIFGDKYGKVLH-LYERDCS---VQRRHQ 271 (765)
Q Consensus 199 Gg~Gv~~v~s-~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~g--grei~v~v~~d~~g~vv~-l~~r~~s---~~~~~~ 271 (765)
+|+||.++.. ..++...++.... .+..++++|+||+. +.++.+-++ + |+++. ...|--. +..+..
T Consensus 166 ~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv-~--g~vv~~a~~R~~~~~~~rtN~~ 237 (316)
T PRK05246 166 GGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLV-D--GEPVGYALARIPAGGETRGNLA 237 (316)
T ss_pred CccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEE-C--CEEhhheeEecCCCCCcccCcc
Confidence 9999999954 4455444433321 23468999999985 357777666 2 46666 4444211 111111
Q ss_pred eeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHH
Q 041518 272 KIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 272 k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~ 351 (765)
......|. .++++. .++...+...++.+|+ ..+.||++- + |++|||..-+.+....+..||+|+....++.
T Consensus 238 ~Gg~~~~~-~l~~~~-~~ia~~~~~~l~~~gl-~~~GVDli~---~---~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~ 308 (316)
T PRK05246 238 AGGRGEAT-PLTERD-REICAAIGPELKERGL-IFVGIDVIG---D---YLTEINVTSPTGIREIERLTGVDIAGMLWDA 308 (316)
T ss_pred CCceEecc-CCCHHH-HHHHHHHHHHHHHhCC-CEEEEEEeC---C---EEEEEeCCCchHHHHHHHHhCCCHHHHHHHH
Confidence 11222344 345432 3333333333456666 578899982 1 6999997633357777889999999999887
Q ss_pred Hc
Q 041518 352 AN 353 (765)
Q Consensus 352 a~ 353 (765)
..
T Consensus 309 ~~ 310 (316)
T PRK05246 309 IE 310 (316)
T ss_pred HH
Confidence 64
No 98
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.53 E-value=1.2e-12 Score=142.04 Aligned_cols=275 Identities=14% Similarity=0.138 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCcccccccE-EEEcCCCCcCcCCCCHH--HHHHHHHHhCCCEEEeCCC--cccc
Q 041518 48 IAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADE-AIRIGPPPARLSYLNGS--SIVDAAIRTGAQAIHPGYG--FLSE 122 (765)
Q Consensus 48 ~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~-~~~i~~~~~~~syld~~--~Il~~a~~~~~DaV~pg~g--~lsE 122 (765)
...+++++++++|++++.+..+.-......-.+.. .+.+... ...+.... ..+. -...|+|++..+ +..+
T Consensus 19 st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~---l~~~D~v~~R~~~~~~~~ 93 (312)
T TIGR01380 19 TTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPN--KQDWYTLGEKVRLS---LGELDAVLMRKDPPFDME 93 (312)
T ss_pred hHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccC--CcceeecCcccccc---cccCCEEEEeCCCCCChh
Confidence 46789999999999988765332111001111110 1222110 11111000 1111 135799997642 2111
Q ss_pred c---HHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCC
Q 041518 123 S---ADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGG 199 (765)
Q Consensus 123 ~---~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~G 199 (765)
. ..+.+.++..|.+++ +++++++.+.||..+.+++. ++|++... .+.+++.+++++.| |+|+||..|++
T Consensus 94 ~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~v~--~~~~~~~~~~~~~g-~vVvKPl~G~~ 165 (312)
T TIGR01380 94 YIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTLVT--RDKAEIRAFLAEHG-DIVLKPLDGMG 165 (312)
T ss_pred hhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEEEe--CCHHHHHHHHHHcC-CEEEEECCCCC
Confidence 1 356788888999877 89999999999999887763 78887643 48889999999988 99999999999
Q ss_pred CccEEEECCh-hHHHHHHHHHHHHHHhcCCCCcEEEecccCC--CeeEEEEEEEeccccEEE-EEeeeccc--cccce-e
Q 041518 200 GKGMRIVQSP-NDFVDSFLGAQREAAASFGINTILLEKYITQ--PRHIEVQIFGDKYGKVLH-LYERDCSV--QRRHQ-K 272 (765)
Q Consensus 200 g~Gv~~v~s~-~el~~a~~~~~~ea~~~fg~~~vlVEeyI~g--grei~v~v~~d~~g~vv~-l~~r~~s~--~~~~~-k 272 (765)
|+|+.++++. .++...++... ..+...+++|+||+. +.++.+-++. |+++. ...|.-.. .+.+. .
T Consensus 166 G~gv~~v~~~~~~~~~~~~~~~-----~~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~ai~R~~~~gd~r~N~~~ 237 (312)
T TIGR01380 166 GEGIFRLDPGDPNFNSILETMT-----QRGREPVMAQRYLPEIKEGDKRILLID---GEPIGAAVARIPAGGEFRGNLAV 237 (312)
T ss_pred CceEEEEcCCCccHHHHHHHHH-----hccCCcEEEEeccccccCCCEEEEEEC---CeEEEEEEEecCCCCCccccccC
Confidence 9999999763 33433333222 122468999999984 3577776663 45554 34332111 01111 1
Q ss_pred eeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCccccccceecCCCHHHHHHHHH
Q 041518 273 IIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRVA 352 (765)
Q Consensus 273 ~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~a 352 (765)
.....|. .++++. .++...+...++++|+ ..+.||++ | .||+|+|.--+.+..-.+..+|+|+...+++..
T Consensus 238 Gg~~~~~-~l~~e~-~~ia~~~~~~~~~~gl-~~agVDii-----g-~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 238 GGRGEAT-ELSERD-REICADVAPELKRRGL-LFVGIDVI-----G-GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred Cceeecc-CCCHHH-HHHHHHHHHHHHhcCC-cEEEEEEe-----C-CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 1122344 455443 2444444444466777 67889998 1 479999986333555567789999999988764
No 99
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.52 E-value=2.6e-14 Score=138.33 Aligned_cols=70 Identities=33% Similarity=0.459 Sum_probs=66.8
Q ss_pred CCcccCCCcceEEE-------EEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 649 PGSVLSPMAGLVVK-------VLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 649 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
...|+|||+|++.+ |+|++||.|++||+|++||+|||+++|.||.+|+|.+++++.|+.|..|++|++|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 35799999999997 79999999999999999999999999999999999999999999999999999874
No 100
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.51 E-value=3.4e-12 Score=132.05 Aligned_cols=267 Identities=18% Similarity=0.238 Sum_probs=183.5
Q ss_pred CcHHHHHHHHHHHHCCCeEEEEecCCCC-CCcccccccEEEEcCCCCcCcCCCCH--HHHHHHHHHhCCCEEEeCCCccc
Q 041518 45 RGEIAYRIMRTAKRLGIRTVAVYSDADR-DSLHVKSADEAIRIGPPPARLSYLNG--SSIVDAAIRTGAQAIHPGYGFLS 121 (765)
Q Consensus 45 ~G~~a~~iiraar~~Gi~vvav~s~~d~-~~~~~~~aD~~~~i~~~~~~~syld~--~~Il~~a~~~~~DaV~pg~g~ls 121 (765)
+...|+.|.+.||+.|++|++|...... .......+|+.+.++ +|.|+ +.+.+-+++. ++|+.-.|.+.
T Consensus 25 gSHSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~------~f~dil~~~iqe~L~~~--n~I~IP~gSfv 96 (361)
T COG1759 25 GSHSALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVD------KFSDILNEEIQEELREL--NAIFIPHGSFV 96 (361)
T ss_pred ecchHHHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEec------hhHHHhhHHHHHHHHHc--CeEEecCCceE
Confidence 3467999999999999999999764322 222334576777663 34433 2334444444 44554445544
Q ss_pred ccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCc
Q 041518 122 ESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGK 201 (765)
Q Consensus 122 E~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~ 201 (765)
....+-....+.-+|.+| +...++.-.|...-+.+|+++||+.|.-+. +++| +.-|||||....-|||
T Consensus 97 ~Y~G~d~ie~~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~~~~----~Pee-------Idr~VIVK~pgAkggR 164 (361)
T COG1759 97 AYVGYDGIENEFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPKKYK----SPEE-------IDRPVIVKLPGAKGGR 164 (361)
T ss_pred EEecchhhhhcccCcccc-cHhHhhhhcchhhHHHHHHHcCCCCCcccC----ChHH-------cCCceEEecCCccCCc
Confidence 444444566678899887 456777777999999999999999998542 6666 5569999999999999
Q ss_pred cEEEECChhHHHHHHHHHHHHHHhc-CCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccc----------cc
Q 041518 202 GMRIVQSPNDFVDSFLGAQREAAAS-FGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQR----------RH 270 (765)
Q Consensus 202 Gv~~v~s~~el~~a~~~~~~ea~~~-fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~----------~~ 270 (765)
|-+++.|.+|+.+..++......-. -+-.++.|||||-| .++..+.|...--+.+-+..-|-.++. +.
T Consensus 165 GyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ 243 (361)
T COG1759 165 GYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKD 243 (361)
T ss_pred eEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeeeeheeeccchhhccCCHHH
Confidence 9999999999999998887521000 01147899999995 577777765422122333211111110 01
Q ss_pred e-------ee--eeecCCCCCCHHHHHHHHHHHHHHHHHc------CCCceeEEEEEEECCCCcEEEEEecccCCcccc
Q 041518 271 Q-------KI--IEEAPAPNVTHDFRALLGQAAVSAAKAV------SYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEHP 334 (765)
Q Consensus 271 ~-------k~--~e~~Pa~~l~~~~~~~l~~~a~~i~~al------g~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~~ 334 (765)
| +. +...|. .+.+.+.+++.+++.+++++. |+-|++..|.++++ +=.+|+.|+.+|+.++..
T Consensus 244 ql~l~~~ptyvv~Gn~p~-vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~-dl~~vVfevS~Ri~gGTN 320 (361)
T COG1759 244 QLELNLEPTYVVVGNIPV-VLRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTD-DLEFVVFEVSARIVGGTN 320 (361)
T ss_pred HhhcCCCceEEEECCcch-hhHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecC-CccEEEEEEeccccCCcc
Confidence 1 11 112466 577888899999999988865 88899999999998 778999999999985554
No 101
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.50 E-value=9e-14 Score=160.94 Aligned_cols=72 Identities=39% Similarity=0.671 Sum_probs=68.7
Q ss_pred CCCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 647 GPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 647 ~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
..+..|+|||||+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++||.|..|++|++|.
T Consensus 522 ~~~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 522 AAGEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CCCceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 445689999999999999999999999999999999999999999999999999999999999999999873
No 102
>PRK07051 hypothetical protein; Validated
Probab=99.50 E-value=8.7e-14 Score=119.76 Aligned_cols=69 Identities=29% Similarity=0.443 Sum_probs=66.8
Q ss_pred CcccCCCcceEEE-------EEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 650 GSVLSPMAGLVVK-------VLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 650 ~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
..|+||++|++++ ++|++||.|++||+|+.+|+|||+++|+||.+|+|.++.+++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999 99999999999999999999999999999999999999999999999999999985
No 103
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.50 E-value=1e-13 Score=160.41 Aligned_cols=70 Identities=44% Similarity=0.676 Sum_probs=66.3
Q ss_pred CCCCCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeE
Q 041518 645 ATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVL 714 (765)
Q Consensus 645 ~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l 714 (765)
+..++..|.|||||+|++|+|++||.|++||+|++||||||+++|.||.+|+|.++.+++||.|..|++|
T Consensus 513 ~~~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 513 KAGAGTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCCCCeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 3456778999999999999999999999999999999999999999999999999999999999999975
No 104
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.49 E-value=7.8e-14 Score=141.70 Aligned_cols=72 Identities=29% Similarity=0.481 Sum_probs=68.3
Q ss_pred CCCcccCCCcceEEE-------EEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 648 PPGSVLSPMAGLVVK-------VLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 648 ~~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
....|+|||+|+|++ |+|++||.|++||+|++||+|||+++|.||.+|+|.+++++.||.|..|++|++|++
T Consensus 196 ~~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 196 SHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred CCCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 345799999999999 799999999999999999999999999999999999999999999999999999863
No 105
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.46 E-value=1.9e-13 Score=132.32 Aligned_cols=70 Identities=36% Similarity=0.535 Sum_probs=67.0
Q ss_pred CCcccCCCcceEEE-------EEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 649 PGSVLSPMAGLVVK-------VLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 649 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
...|+|||.|++.. |+|++||.|++||+|+.||+|||.++|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 45799999999997 89999999999999999999999999999999999999999999999999999874
No 106
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.44 E-value=4.7e-12 Score=135.61 Aligned_cols=203 Identities=18% Similarity=0.176 Sum_probs=124.5
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCC--CHHHHHHHHHHhCC-cEEEeecCCCCCccEEEECChhH-----
Q 041518 140 PPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQ--DIDLMKSEAAKIGY-PILIKPTHGGGGKGMRIVQSPND----- 211 (765)
Q Consensus 140 p~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~--s~~e~~~~~~~ig~-PvVVKP~~g~Gg~Gv~~v~s~~e----- 211 (765)
++.+..-++.||..+..+++++|||+|+++.+... +.+++.+++. ++ |+|+||..|++|+||.++++.++
T Consensus 27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~ 104 (317)
T TIGR02291 27 NKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGKGILVITSRKDGRYRK 104 (317)
T ss_pred CCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHc--cCCCEEEEECCCCCccCeEEEEecccccccc
Confidence 57777889999999999999999999997755411 2233433333 45 69999999999999999977644
Q ss_pred ----------HHHHHHHHHHHHHhcCCC-CcEEEecccCCC-----------eeEEEEEEEeccccEEEEEeeecccc--
Q 041518 212 ----------FVDSFLGAQREAAASFGI-NTILLEKYITQP-----------RHIEVQIFGDKYGKVLHLYERDCSVQ-- 267 (765)
Q Consensus 212 ----------l~~a~~~~~~ea~~~fg~-~~vlVEeyI~gg-----------rei~v~v~~d~~g~vv~l~~r~~s~~-- 267 (765)
+...+...........+. +.+++|+++... +.+.|-++.+ ..+...-| ++..
T Consensus 105 ~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~---~~vaa~~R-~~~~~~ 180 (317)
T TIGR02291 105 PSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKG---YPVMAMMR-LPTRAS 180 (317)
T ss_pred ccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECC---EEEEEEEE-ccCccC
Confidence 333333222111111112 246665555433 3445545432 23333223 1110
Q ss_pred --cc--ce--eee-------------------eecCC-----CCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCC
Q 041518 268 --RR--HQ--KII-------------------EEAPA-----PNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVS 317 (765)
Q Consensus 268 --~~--~~--k~~-------------------e~~Pa-----~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~ 317 (765)
+. ++ ... +.-|. ..+..+..+++.+.|.++.+++|+ |.+.+|+++++ +
T Consensus 181 ~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~-~ 258 (317)
T TIGR02291 181 DGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDK-E 258 (317)
T ss_pred CcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeC-C
Confidence 00 00 000 00111 123346678899999999999998 99999999986 6
Q ss_pred CcEEEEEecccCCccccccceecCCCHHHHHHHH
Q 041518 318 DQFYFMEMNTRLQVEHPVTEMIVDQDLVEWQIRV 351 (765)
Q Consensus 318 g~~~~iEiN~R~~~~~~~~e~~tGvDl~~~~i~~ 351 (765)
+++++||+|++++.. +......|++-.-..+..
T Consensus 259 ~g~~VlEVN~~Pg~t-~~~a~~~Gl~~~~~~~~~ 291 (317)
T TIGR02291 259 EGPLVLELNARPGLA-IQIANGAGLLPRLKHIEA 291 (317)
T ss_pred CCEEEEEeCCCCCCC-HHHHHHCCCcHHHHHHHH
Confidence 789999999999744 333344566554444444
No 107
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.40 E-value=1.4e-12 Score=107.85 Aligned_cols=67 Identities=54% Similarity=0.817 Sum_probs=64.6
Q ss_pred cccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 651 SVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
.|+||++|+|.+|++++||.|++||+|+.+|+||+..+|+||.+|+|..++++.|+.|..|++|+.|
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 3799999999999999999999999999999999999999999999999999999999999999875
No 108
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.25 E-value=1.2e-11 Score=154.20 Aligned_cols=72 Identities=40% Similarity=0.560 Sum_probs=68.6
Q ss_pred CCCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 647 GPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 647 ~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
++...|.|||+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|+++++++||.|..|++|+.|+
T Consensus 1130 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1130 EGAEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 345679999999999999999999999999999999999999999999999999999999999999999874
No 109
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.23 E-value=4.7e-11 Score=100.88 Aligned_cols=61 Identities=36% Similarity=0.536 Sum_probs=59.1
Q ss_pred cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 657 AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 657 ~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
+|++.+|++++||.|++||+|+.+|+|||..+|+||.+|+|.+++++.|+.+..|+.|++|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999875
No 110
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.22 E-value=2.4e-11 Score=135.58 Aligned_cols=65 Identities=22% Similarity=0.401 Sum_probs=62.7
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
-+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++||.|..|++|+.|+..
T Consensus 104 ~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 104 TDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred ceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 47899999999999999999999999999999999999999999999999999999999999754
No 111
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.18 E-value=5e-11 Score=131.84 Aligned_cols=66 Identities=26% Similarity=0.432 Sum_probs=63.3
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..|+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|.++.+++|+.|..|++|+.+++..
T Consensus 15 ~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 15 TEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 579999999999999999999999999999999999999999999999999999999999998643
No 112
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.18 E-value=5e-11 Score=132.20 Aligned_cols=66 Identities=26% Similarity=0.366 Sum_probs=63.1
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++||.|..|++|++|+..+
T Consensus 57 ~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 57 SEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred ceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 478999999999999999999999999999999999999999999999999999999999997643
No 113
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.06 E-value=3.9e-10 Score=125.83 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=63.3
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|++.+
T Consensus 15 ~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 15 TEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred ceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 469999999999999999999999999999999999999999999999999999999999998654
No 114
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.98 E-value=1.3e-08 Score=113.97 Aligned_cols=109 Identities=22% Similarity=0.368 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhC-CcEEEeec--CCCC--CccEEEECChhHHHHHHHHHHHHHH
Q 041518 150 DKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIG-YPILIKPT--HGGG--GKGMRIVQSPNDFVDSFLGAQREAA 224 (765)
Q Consensus 150 DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig-~PvVVKP~--~g~G--g~Gv~~v~s~~el~~a~~~~~~ea~ 224 (765)
+.+..|++|+++|||+|++.... +.+++.++++.+| ||+|+||. .|+. +-||++++|.+|+.++++++.....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~~~~~--~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRGYVAT--SVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCceeeC--CHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 46788999999999999987654 8999999999999 99999998 3222 2389999999999999988764111
Q ss_pred hc--C---C--CCcEEEecccCCCeeEEEEEEEec--cccEEEEE
Q 041518 225 AS--F---G--INTILLEKYITQPRHIEVQIFGDK--YGKVLHLY 260 (765)
Q Consensus 225 ~~--f---g--~~~vlVEeyI~ggrei~v~v~~d~--~g~vv~l~ 260 (765)
.. . + -..++||+|+++++|+.+.++.|. .|.++.++
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~ 126 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMAS 126 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEE
Confidence 00 0 1 136999999998899999999986 34455443
No 115
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.96 E-value=3.3e-08 Score=105.74 Aligned_cols=187 Identities=19% Similarity=0.216 Sum_probs=119.2
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCcccc---------CCCCHHHHHHHHHHh-CCcEEEeecCCCCCccEEEECCh
Q 041518 140 PPVSAIRDMGDKSASKRIMGAAGVPLVPGYHG---------NEQDIDLMKSEAAKI-GYPILIKPTHGGGGKGMRIVQSP 209 (765)
Q Consensus 140 p~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~---------~~~s~~e~~~~~~~i-g~PvVVKP~~g~Gg~Gv~~v~s~ 209 (765)
++.+...++.||..+++++.++|||+|+.... ...+.+++.+++... ..++++||..|+||+|+.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 57788889999999999999999999993210 023678888888765 57999999999999999998766
Q ss_pred hH--HHHHHHHHHHHHHhcCCCCcEEEecccCCCee-----------EEEEEEEeccccEEEE--Eee------------
Q 041518 210 ND--FVDSFLGAQREAAASFGINTILLEKYITQPRH-----------IEVQIFGDKYGKVLHL--YER------------ 262 (765)
Q Consensus 210 ~e--l~~a~~~~~~ea~~~fg~~~vlVEeyI~ggre-----------i~v~v~~d~~g~vv~l--~~r------------ 262 (765)
+. +............. .....+|||++|....+ +.+-.+.+. +.+..+ .-|
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~ 173 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-LGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFH 173 (285)
T ss_pred cCcccccchhHHHHHHHh-cCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccC
Confidence 52 11111111111111 11128999999984222 334444443 222111 110
Q ss_pred ----------ec---cc--cccceeeeeecCCC-----CCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEE
Q 041518 263 ----------DC---SV--QRRHQKIIEEAPAP-----NVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYF 322 (765)
Q Consensus 263 ----------~~---s~--~~~~~k~~e~~Pa~-----~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~ 322 (765)
+. .. ...+...++.-|-. .+.-+..+++.+.+.++++.+-..+....|+.+|+ +| |++
T Consensus 174 ~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~-~G-p~l 251 (285)
T PF14397_consen 174 QGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITE-DG-PVL 251 (285)
T ss_pred CCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcC-CC-cEE
Confidence 00 00 00111122222321 12234568999999999998877799999999997 77 999
Q ss_pred EEecccCC
Q 041518 323 MEMNTRLQ 330 (765)
Q Consensus 323 iEiN~R~~ 330 (765)
||.|.|.+
T Consensus 252 lE~N~~~~ 259 (285)
T PF14397_consen 252 LEGNARWD 259 (285)
T ss_pred EEeeCCCC
Confidence 99999943
No 116
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=98.96 E-value=1.8e-09 Score=120.27 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=62.5
Q ss_pred cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 657 AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 657 ~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|++|+.++
T Consensus 14 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~ 78 (403)
T TIGR01347 14 EGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGN 78 (403)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 59999999999999999999999999999999999999999999999999999999999998653
No 117
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=98.93 E-value=2.1e-09 Score=119.91 Aligned_cols=66 Identities=32% Similarity=0.473 Sum_probs=63.7
Q ss_pred cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcc
Q 041518 657 AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHI 722 (765)
Q Consensus 657 ~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~ 722 (765)
-|+|++|+|++||.|++||+|++||+.|..++|.||.+|+|.++++++|+.|..|++|++|+..+.
T Consensus 16 EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 16 EGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred eEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 689999999999999999999999999999999999999999999999999999999999998643
No 118
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.90 E-value=2.8e-09 Score=125.80 Aligned_cols=66 Identities=30% Similarity=0.449 Sum_probs=63.2
Q ss_pred CCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 655 PMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 655 p~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
...|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|..|++|+.|+.+
T Consensus 216 ~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~ 281 (633)
T PRK11854 216 GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVE 281 (633)
T ss_pred ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 358999999999999999999999999999999999999999999999999999999999999754
No 119
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.89 E-value=3.6e-09 Score=124.93 Aligned_cols=65 Identities=28% Similarity=0.462 Sum_probs=63.0
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
-.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++||.|..|++|++|+.+
T Consensus 13 ~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 13 DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 47899999999999999999999999999999999999999999999999999999999999876
No 120
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.87 E-value=1.1e-07 Score=100.58 Aligned_cols=184 Identities=17% Similarity=0.260 Sum_probs=118.2
Q ss_pred HHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCC-CC--CCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEE
Q 041518 130 CGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAG-VP--LVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIV 206 (765)
Q Consensus 130 ~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~G-vp--vp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v 206 (765)
-+..|++|+.+ .+.||+.+.+.|.+.. +. .|++... ++.+++.+++++.+ -|+|||..|++|+||.++
T Consensus 4 k~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T~~~--~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri 74 (262)
T PF14398_consen 4 KKQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPETELL--TSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRI 74 (262)
T ss_pred HhcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCceEc--CCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEE
Confidence 45778999955 3589999999999864 33 4554433 47789999988876 699999999999999775
Q ss_pred C----------------------ChhHHHHHHHHHHHHHHhcCCCCcEEEecccC----CCeeEEEEEE--Eecccc--E
Q 041518 207 Q----------------------SPNDFVDSFLGAQREAAASFGINTILLEKYIT----QPRHIEVQIF--GDKYGK--V 256 (765)
Q Consensus 207 ~----------------------s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~----ggrei~v~v~--~d~~g~--v 256 (765)
+ +.+++...+... .+...+|||+.|+ .++.+.+-++ .++.|. +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~v 147 (262)
T PF14398_consen 75 EKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL-------LGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQV 147 (262)
T ss_pred EEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh-------cCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEE
Confidence 3 234444444433 3457999999997 3455555555 455553 3
Q ss_pred EEEEeeec---cccccceeeeeecCC-C-----CCCHHHHHHHHHHHHHHHHHc----CC-CceeEEEEEEECCCCcEEE
Q 041518 257 LHLYERDC---SVQRRHQKIIEEAPA-P-----NVTHDFRALLGQAAVSAAKAV----SY-HNAGTVEFIVDTVSDQFYF 322 (765)
Q Consensus 257 v~l~~r~~---s~~~~~~k~~e~~Pa-~-----~l~~~~~~~l~~~a~~i~~al----g~-~G~~~vEf~~~~~~g~~~~ 322 (765)
..+..|-. ++...........|. . .-.....++|.+.+..+++.+ |. -|-..+|+-+|. +|+++|
T Consensus 148 tg~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~-~g~iWl 226 (262)
T PF14398_consen 148 TGIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDK-NGKIWL 226 (262)
T ss_pred EEEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcC-CCCEEE
Confidence 33333211 111111000011100 0 112345666777777666654 65 378889999998 999999
Q ss_pred EEecccCC
Q 041518 323 MEMNTRLQ 330 (765)
Q Consensus 323 iEiN~R~~ 330 (765)
||+|++++
T Consensus 227 iEvN~kP~ 234 (262)
T PF14398_consen 227 IEVNSKPG 234 (262)
T ss_pred EEEeCCCC
Confidence 99999996
No 121
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.87 E-value=8.6e-08 Score=107.37 Aligned_cols=109 Identities=18% Similarity=0.295 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHh-CCcEEEeecCCCCCc----cEEEECChhHHHHHHHHHHHHHH
Q 041518 150 DKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKI-GYPILIKPTHGGGGK----GMRIVQSPNDFVDSFLGAQREAA 224 (765)
Q Consensus 150 DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~i-g~PvVVKP~~g~Gg~----Gv~~v~s~~el~~a~~~~~~ea~ 224 (765)
+++.+|++|+++|||+|++..+. +.+++.++++++ |||+++||....||| ||++.+|.+++.+++++......
T Consensus 4 ~e~~ak~lL~~~gIpvp~~~~~~--~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~ 81 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRGIVAT--TPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL 81 (388)
T ss_pred CHHHHHHHHHHcCCCCCCCeeeC--CHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence 57889999999999999987655 999999999999 999999998655555 99999999999999988874311
Q ss_pred ---hc--CC--CCcEEEecccCCCeeEEEEEEEec-cccEEEEE
Q 041518 225 ---AS--FG--INTILLEKYITQPRHIEVQIFGDK-YGKVLHLY 260 (765)
Q Consensus 225 ---~~--fg--~~~vlVEeyI~ggrei~v~v~~d~-~g~vv~l~ 260 (765)
.. .+ -..++||+++++++|+.+.+..|. .|.++.++
T Consensus 82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 00 11 135999999998899999999986 56666554
No 122
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.82 E-value=1.1e-08 Score=114.84 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=61.5
Q ss_pred cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 657 AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 657 ~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
-|+|++|+|++||.|++||+|+++|+|||++++.||.+|+|.++++++|+.|..|++|+.|+.+
T Consensus 12 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 75 (416)
T PLN02528 12 ECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVE 75 (416)
T ss_pred EEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecc
Confidence 3899999999999999999999999999999999999999999999999999999999999744
No 123
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.80 E-value=8.8e-09 Score=119.44 Aligned_cols=65 Identities=31% Similarity=0.493 Sum_probs=62.1
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|+.|+.+
T Consensus 128 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 192 (546)
T TIGR01348 128 EKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVA 192 (546)
T ss_pred ceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecC
Confidence 35789999999999999999999999999999999999999999999999999999999999754
No 124
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.78 E-value=1.4e-08 Score=118.72 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=63.0
Q ss_pred CCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 655 PMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 655 p~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
...|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+.|..|++|+.|+.+
T Consensus 147 ~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 212 (590)
T TIGR02927 147 VTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDA 212 (590)
T ss_pred cceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 347999999999999999999999999999999999999999999999999999999999999753
No 125
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.77 E-value=1.7e-08 Score=117.08 Aligned_cols=67 Identities=30% Similarity=0.498 Sum_probs=63.9
Q ss_pred CCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 654 SPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 654 ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
++.+|+|++|+|++||.|++||+|++||+|||+++|.|+.+|+|.+++++.|+.|..|++|++|+..
T Consensus 10 ~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 10 DNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred CCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 3478999999999999999999999999999999999999999999999999999999999999754
No 126
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.70 E-value=3.1e-08 Score=115.36 Aligned_cols=64 Identities=31% Similarity=0.476 Sum_probs=62.0
Q ss_pred cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 657 AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 657 ~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
.|+|++|+|++||.|++||.|+++|+|||+++|+||++|+|.++++++|+.|..|++|+.|...
T Consensus 132 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 132 EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 5899999999999999999999999999999999999999999999999999999999999754
No 127
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.68 E-value=1.1e-07 Score=78.80 Aligned_cols=65 Identities=32% Similarity=0.456 Sum_probs=61.7
Q ss_pred cCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 653 LSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 653 ~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
.++-.|++.+|+++.|+.|.+||+++.+|+|||...+.+|.+|++.+.++..|+.+..|++|++|
T Consensus 10 ~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 10 ESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 35778999999999999999999999999999999999999999999999999999999999874
No 128
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.60 E-value=1e-07 Score=111.18 Aligned_cols=65 Identities=32% Similarity=0.523 Sum_probs=62.1
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
-.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|+.|++.
T Consensus 14 ~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~ 78 (547)
T PRK11855 14 VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAA 78 (547)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccc
Confidence 36999999999999999999999999999999999999999999999999999999999999743
No 129
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.58 E-value=1.5e-07 Score=106.06 Aligned_cols=66 Identities=32% Similarity=0.444 Sum_probs=63.1
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.++.+++|+.|..|++|+.|...+
T Consensus 15 ~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 15 TEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred ceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 479999999999999999999999999999999999999999999999999999999999997543
No 130
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.54 E-value=1.8e-07 Score=105.55 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=62.1
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCc-cCCCCeEEEEEeC
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQ-VSDGSVLFRLQAV 720 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i~~~ 720 (765)
-.|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|++|+..
T Consensus 12 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 12 TTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred ceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEecc
Confidence 4689999999999999999999999999999999999999999999999999 9999999999653
No 131
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.52 E-value=9.5e-07 Score=90.80 Aligned_cols=110 Identities=22% Similarity=0.391 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCC-----CccEEE-ECChhHHHHHHHHHHHHH
Q 041518 150 DKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGG-----GKGMRI-VQSPNDFVDSFLGAQREA 223 (765)
Q Consensus 150 DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~G-----g~Gv~~-v~s~~el~~a~~~~~~ea 223 (765)
+-...+++|+.+|||+|++..+. +.+++.++++.+|||+++|...-.= --||++ ++|++++.+++++.....
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~--~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~ 88 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVT--SAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERV 88 (222)
T ss_dssp -HHHHHHHHHTTT------EEES--SHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCeeEeC--CHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHH
Confidence 55678999999999999998765 9999999999999999999986541 237888 999999999999998876
Q ss_pred HhcCC---CCcEEEecccC-CCeeEEEEEEEec-cccEEEEEe
Q 041518 224 AASFG---INTILLEKYIT-QPRHIEVQIFGDK-YGKVLHLYE 261 (765)
Q Consensus 224 ~~~fg---~~~vlVEeyI~-ggrei~v~v~~d~-~g~vv~l~~ 261 (765)
..... ...++||+.++ ++.|+.+.+..|. .|.++.++.
T Consensus 89 ~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~ 131 (222)
T PF13549_consen 89 AAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGL 131 (222)
T ss_dssp HHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE
T ss_pred HHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcC
Confidence 54332 26899999999 8899999999985 677777753
No 132
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.48 E-value=3e-07 Score=104.30 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=60.9
Q ss_pred cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCC-ccCCCCeEEEEEeC
Q 041518 657 AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQ-QVSDGSVLFRLQAV 720 (765)
Q Consensus 657 ~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~-~v~~g~~l~~i~~~ 720 (765)
.|+|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+.|+++
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 16 EGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred eeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 48999999999999999999999999999999999999999999999995 79999999999653
No 133
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.47 E-value=3.3e-07 Score=104.89 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=60.1
Q ss_pred cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCC-ccCCCCeEEEEEe
Q 041518 657 AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQ-QVSDGSVLFRLQA 719 (765)
Q Consensus 657 ~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~-~v~~g~~l~~i~~ 719 (765)
.|+|++|+|++||.|++||+|+++|++|..+++.||.+|+|.++++++|+ .|..|++|+++.+
T Consensus 126 eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 126 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred eeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 58999999999999999999999999999999999999999999999996 7999999998843
No 134
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.39 E-value=6.7e-07 Score=104.75 Aligned_cols=64 Identities=20% Similarity=0.397 Sum_probs=61.9
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
-.|+|++|+|++||.|++||+|+++|+|||.++|.||.+|+|.++++++|+.|..|++|+.|+.
T Consensus 15 ~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~ 78 (590)
T TIGR02927 15 TEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE 78 (590)
T ss_pred cEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence 4789999999999999999999999999999999999999999999999999999999999975
No 135
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.36 E-value=1.5e-07 Score=98.79 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=61.4
Q ss_pred cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 657 AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 657 ~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
-|++..|+.++||.|++++.|++||+.|...+|.||.+|+|++++|++||+|..|+.|+.|++..
T Consensus 86 eG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ga 150 (457)
T KOG0559|consen 86 EGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGA 150 (457)
T ss_pred cchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCC
Confidence 46677899999999999999999999999999999999999999999999999999999999853
No 136
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.34 E-value=1.3e-05 Score=89.69 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=85.6
Q ss_pred HHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCc-EEEeecCCCC----CccEEEECChhHHHHHHHHHHHHHH-
Q 041518 151 KSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYP-ILIKPTHGGG----GKGMRIVQSPNDFVDSFLGAQREAA- 224 (765)
Q Consensus 151 K~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~P-vVVKP~~g~G----g~Gv~~v~s~~el~~a~~~~~~ea~- 224 (765)
-+..|++|+++|||+|++.... +.+|+.+.++++||| +++|+..-.| +.||.+..|.+|+.++++++.....
T Consensus 5 E~eak~lL~~yGIpvp~~~~~~--~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~ 82 (392)
T PRK14046 5 EYQAKELLASFGVAVPRGALAY--SPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLV 82 (392)
T ss_pred HHHHHHHHHHcCCCCCCceEEC--CHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhh
Confidence 4677999999999999988655 999999999999995 5999843333 3479999999999999998875421
Q ss_pred --hc----CCCCcEEEecccCCCeeEEEEEEEec-cccEEEEE
Q 041518 225 --AS----FGINTILLEKYITQPRHIEVQIFGDK-YGKVLHLY 260 (765)
Q Consensus 225 --~~----fg~~~vlVEeyI~ggrei~v~v~~d~-~g~vv~l~ 260 (765)
.. ..-..++||++++.++|+-+.+..|. .|.++.++
T Consensus 83 ~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 83 THQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred hhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 11 11247999999998999999999985 56666664
No 137
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.34 E-value=5.8e-06 Score=88.48 Aligned_cols=177 Identities=18% Similarity=0.298 Sum_probs=109.8
Q ss_pred CCCcEECCcHHHHHHhcCHHHHHHHHHHC-------CCCCCCccccCCCCHHHHHHHH--HHhCCcEEEeecCCCC---C
Q 041518 133 NGLTFIGPPVSAIRDMGDKSASKRIMGAA-------GVPLVPGYHGNEQDIDLMKSEA--AKIGYPILIKPTHGGG---G 200 (765)
Q Consensus 133 ~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~-------Gvpvp~~~~~~~~s~~e~~~~~--~~ig~PvVVKP~~g~G---g 200 (765)
-.+.++ -++++++.+.|+..|.+++.+. .+.+|++.... .+.+++.+.. +.+.||+|+||....| |
T Consensus 77 P~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~-~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S 154 (307)
T PF05770_consen 77 PEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVIN-SDAESLPELLKEAGLKFPLICKPLVACGSADS 154 (307)
T ss_dssp TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEES-SSHCCHHHHHHCTTS-SSEEEEESB-SSTSCC
T ss_pred CCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEc-CCHHHHHHHHHHCCCcccEEeeehhhcCCccc
Confidence 456555 6889999999999999988875 67888876554 2355555554 3567999999987654 6
Q ss_pred ccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccC-CCeeEEEEEEEeccccEEEEEeee----ccccc---c---
Q 041518 201 KGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYIT-QPRHIEVQIFGDKYGKVLHLYERD----CSVQR---R--- 269 (765)
Q Consensus 201 ~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~-ggrei~v~v~~d~~g~vv~l~~r~----~s~~~---~--- 269 (765)
..|.+|.+++.|.+. ..++++||||. |+.-|-|-+++|. +.+..|. .+... .
T Consensus 155 H~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd~----v~~v~R~SLpn~~~~~~~~~~~~ 217 (307)
T PF05770_consen 155 HKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGDK----VFVVKRPSLPNVSSGKLDREEIF 217 (307)
T ss_dssp CEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTE----EEEEEEE------SSS-TCGGCC
T ss_pred eEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecCE----EEEEECCCCCCCCcccccccccc
Confidence 789999999998752 36899999999 5566777777542 3333331 11000 0
Q ss_pred --ceee-----------eeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCC-CcEEEEEecccCC
Q 041518 270 --HQKI-----------IEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVS-DQFYFMEMNTRLQ 330 (765)
Q Consensus 270 --~~k~-----------~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~-g~~~~iEiN~R~~ 330 (765)
...+ ....+. .....-.+.+.++|..+-++||+ ..+++|++++..+ |++|+|.||-=+|
T Consensus 218 f~~~~vs~~~~~~~~~~~d~~~~-~~~~p~~~~v~~la~~LR~~lgL-~LFgfDvI~~~~t~~~~~VIDINyFPg 290 (307)
T PF05770_consen 218 FDFHQVSKLESSSDLSDLDKDPS-QVEMPPDELVEKLAKELRRALGL-TLFGFDVIRENGTGGRYYVIDINYFPG 290 (307)
T ss_dssp CEGGGTCSTTTSSGGGSBSS-TT-TTTS--HHHHHHHHHHHHHHHT--SEEEEEEEEGCCT-SSEEEEEEEES--
T ss_pred eeccccCCccccCchhhcccCcc-cccCCCHHHHHHHHHHHHHHhCc-ceeeeEEEEEcCCCCcEEEEEeccCCC
Confidence 0000 000011 11122346788889999999999 7899999998766 7899999999886
No 138
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.30 E-value=7.8e-06 Score=88.28 Aligned_cols=107 Identities=20% Similarity=0.384 Sum_probs=84.9
Q ss_pred HHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhC-CcEEEeecCCCCCc----cEEEECChhHHHHHHHHHHH----
Q 041518 151 KSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIG-YPILIKPTHGGGGK----GMRIVQSPNDFVDSFLGAQR---- 221 (765)
Q Consensus 151 K~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig-~PvVVKP~~g~Gg~----Gv~~v~s~~el~~a~~~~~~---- 221 (765)
-+..|++++++|||+|+++... +++++.+++.++| .|+|+|+---.||| ||+++.|.+|..++.+....
T Consensus 5 EYqaKelf~~~GiPvp~g~v~~--s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPGYVAT--SPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCceeee--CHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 4678999999999999998766 9999999999998 89999998766655 69999999999998888764
Q ss_pred HHHhcCCCCcEEEecccC-CCeeEEEEEEEeccccEEEE
Q 041518 222 EAAASFGINTILLEKYIT-QPRHIEVQIFGDKYGKVLHL 259 (765)
Q Consensus 222 ea~~~fg~~~vlVEeyI~-ggrei~v~v~~d~~g~vv~l 259 (765)
.....-.-..+|||+.++ -.+|+-+.++.|.......+
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~ 121 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL 121 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence 211111125899999998 44499999999876544443
No 139
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=98.23 E-value=2.2e-06 Score=93.85 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=63.9
Q ss_pred cCCC-cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCC-CccCCCCeEEEEEeCc
Q 041518 653 LSPM-AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAG-QQVSDGSVLFRLQAVH 721 (765)
Q Consensus 653 ~ap~-~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G-~~v~~g~~l~~i~~~~ 721 (765)
.+-| -|.|++|..++||.+++||+|++||++|..+++.+..+|.+.+|++.+| ..|..|.+|+.|.+.+
T Consensus 47 SPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e 117 (470)
T KOG0557|consen 47 SPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDE 117 (470)
T ss_pred CccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEeccc
Confidence 3445 6999999999999999999999999999999999999999999999999 8899999999987654
No 140
>PRK13380 glycine cleavage system protein H; Provisional
Probab=98.22 E-value=1.3e-06 Score=83.47 Aligned_cols=71 Identities=34% Similarity=0.408 Sum_probs=58.4
Q ss_pred cccCCCcceEEEEEcC-CCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCcc------CCC-CeEEEEEeCc
Q 041518 651 SVLSPMAGLVVKVLAN-DGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQV------SDG-SVLFRLQAVH 721 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~-~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v------~~g-~~l~~i~~~~ 721 (765)
.....+.|.|+.+.+. +|+.|++||++++||+|||..+|.||.+|+|.+++.+.-+.- ..| -=|+++...+
T Consensus 37 d~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d 115 (144)
T PRK13380 37 DYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWFFRFKPAN 115 (144)
T ss_pred HHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeEEEEEECC
Confidence 3567799999999987 899999999999999999999999999999999987654421 122 3577777655
No 141
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.21 E-value=4.1e-06 Score=94.43 Aligned_cols=75 Identities=28% Similarity=0.460 Sum_probs=65.4
Q ss_pred CCCCcccCCCcceEEEEE-cCCCCeecCCCeEEEEEec------------------------------------------
Q 041518 647 GPPGSVLSPMAGLVVKVL-ANDGTKVEEGQPILVLEAM------------------------------------------ 683 (765)
Q Consensus 647 ~~~~~v~ap~~G~v~~~~-v~~Gd~V~~G~~l~~~eam------------------------------------------ 683 (765)
.....|.|+.+|.|.+++ +++||.|++||+|++|++=
T Consensus 121 ~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l 200 (409)
T PRK09783 121 YQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRL 200 (409)
T ss_pred CceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHH
Confidence 334579999999999998 9999999999999999820
Q ss_pred ------ceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 684 ------KMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 684 ------Km~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
.....|+||++|+|.+..+.+|+.|.+|++|++|...+
T Consensus 201 ~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 201 IATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 244 (409)
T ss_pred HHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence 12468999999999999999999999999999997653
No 142
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.16 E-value=6.4e-05 Score=84.38 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHh---CCcEEEeecCCCCCcc-----------EEEECChhHHHHH
Q 041518 150 DKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKI---GYPILIKPTHGGGGKG-----------MRIVQSPNDFVDS 215 (765)
Q Consensus 150 DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~i---g~PvVVKP~~g~Gg~G-----------v~~v~s~~el~~a 215 (765)
.-+..|++|+++|||+|++.... +.+|+.+.++++ ++|+|+|+.--.|||| |.++++ +|+.++
T Consensus 31 ~EyqaK~LL~~~GIpvp~~~va~--t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~a 107 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKGAAAS--SLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEEL 107 (422)
T ss_pred CHHHHHHHHHHcCCCCCCceeeC--CHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHH
Confidence 46788999999999999987655 999999999998 6999999995444444 667766 999999
Q ss_pred HHHHHHHH--Hhc-----CCCCcEEEecccCCCeeEEEEEEEec--cccEEE
Q 041518 216 FLGAQREA--AAS-----FGINTILLEKYITQPRHIEVQIFGDK--YGKVLH 258 (765)
Q Consensus 216 ~~~~~~ea--~~~-----fg~~~vlVEeyI~ggrei~v~v~~d~--~g~vv~ 258 (765)
+++..... ... ..-..++|||.+...+|+-+.+..|. .|.++.
T Consensus 108 a~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil 159 (422)
T PLN00124 108 AGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLII 159 (422)
T ss_pred HHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEE
Confidence 88886531 110 01136887777776889999999986 345553
No 143
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.13 E-value=5.6e-06 Score=90.82 Aligned_cols=35 Identities=34% Similarity=0.442 Sum_probs=32.6
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..|+||.+|+|..+.+++|+.|.+|++|+.|.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence 57999999999999999999999999999998764
No 144
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.13 E-value=5.4e-06 Score=73.96 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=48.0
Q ss_pred cCCCcceEEEEEc-CCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCc
Q 041518 653 LSPMAGLVVKVLA-NDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQ 707 (765)
Q Consensus 653 ~ap~~G~v~~~~v-~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~ 707 (765)
...+.|.|..+.. ++|+.|++||+|++||+||+..+|.||.+|+|.+++.+.++.
T Consensus 24 ~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 24 AQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred HHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 3457899998665 559999999999999999999999999999999998777654
No 145
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.06 E-value=2.6e-05 Score=73.19 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=56.6
Q ss_pred cCCCcceEEEEEc-CCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcC---CCCccC---CCC-eEEEEEeCc
Q 041518 653 LSPMAGLVVKVLA-NDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVT---AGQQVS---DGS-VLFRLQAVH 721 (765)
Q Consensus 653 ~ap~~G~v~~~~v-~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~---~G~~v~---~g~-~l~~i~~~~ 721 (765)
.....|.|+.+.. ++|+.|++||+++.||+||...+|.||.+|+|.+++.+ ..+.+. .|+ -|++|.+.+
T Consensus 32 a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~ 108 (127)
T PRK01202 32 AQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD 108 (127)
T ss_pred HHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence 4457788887764 56999999999999999999999999999999999544 445665 554 899998765
No 146
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.05 E-value=3.4e-05 Score=76.18 Aligned_cols=141 Identities=16% Similarity=0.263 Sum_probs=72.6
Q ss_pred CCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECCh-hHHHHHHHHHHHHHHhcCCCCcEEEecccCCCe-
Q 041518 165 LVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSP-NDFVDSFLGAQREAAASFGINTILLEKYITQPR- 242 (765)
Q Consensus 165 vp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~-~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggr- 242 (765)
+|++... .+.+++.++.++.+. +|+||..|.||+||.++... ..+...++.+.. .+...+++|+|++.-+
T Consensus 12 ~P~T~vs--~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~-----~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPTLVS--RDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTK-----NGERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--EEEE--S-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTT-----TTTS-EEEEE--GGGGG
T ss_pred CcCEEEE--CCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHh-----cCCccEEEEeccccccC
Confidence 3555443 489999999999998 99999999999999999874 455555554432 2245799999998533
Q ss_pred -eEEEEEEEeccccEEEEEeeeccccccce----eeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCc--eeEEEEEEEC
Q 041518 243 -HIEVQIFGDKYGKVLHLYERDCSVQRRHQ----KIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHN--AGTVEFIVDT 315 (765)
Q Consensus 243 -ei~v~v~~d~~g~vv~l~~r~~s~~~~~~----k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G--~~~vEf~~~~ 315 (765)
+.++-++ +|..++..-|- +....+. .-....+. .++ ++-.++|.++...|.=+| ...+|++
T Consensus 84 GDkRii~~---nG~~~~av~R~-P~~gd~R~N~~~Gg~~~~~-~lt----~~e~~i~~~i~~~L~~~Gl~f~GiDvi--- 151 (173)
T PF02955_consen 84 GDKRIILF---NGEPSHAVRRI-PAKGDFRSNLAAGGSAEPA-ELT----EREREICEQIGPKLREDGLLFVGIDVI--- 151 (173)
T ss_dssp -EEEEEEE---TTEE-SEEEEE---SS-S---GGGTSCEEEE-E------HHHHHHHHHHHHHHHHTT--EEEEEEE---
T ss_pred CCEEEEEE---CCEEhHHeecC-CCCCCceeeeccCCceeec-CCC----HHHHHHHHHHHHHHhhcCcEEEEEecc---
Confidence 4444444 23444433321 1111110 00011122 233 334455555555543334 5668876
Q ss_pred CCCcEEEEEeccc
Q 041518 316 VSDQFYFMEMNTR 328 (765)
Q Consensus 316 ~~g~~~~iEiN~R 328 (765)
.+ |++|||-=
T Consensus 152 -g~--~l~EiNvt 161 (173)
T PF02955_consen 152 -GD--KLTEINVT 161 (173)
T ss_dssp -TT--EEEEEE-S
T ss_pred -cc--ceEEEecc
Confidence 22 89999963
No 147
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=98.05 E-value=1e-05 Score=89.38 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=32.9
Q ss_pred EEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 686 EHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 686 ~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
...|+||++|+|.++.+++|+.|.+|++|+.|.+.+
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 457999999999999999999999999999997664
No 148
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=98.05 E-value=1.2e-05 Score=87.24 Aligned_cols=70 Identities=26% Similarity=0.472 Sum_probs=61.8
Q ss_pred ccCCCcceEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------
Q 041518 652 VLSPMAGLVVKVLANDGTKVEEGQPILVLEAMK----------------------------------------------- 684 (765)
Q Consensus 652 v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamK----------------------------------------------- 684 (765)
|.++.+|+|.+++|++||.|++||+|+.|+.-.
T Consensus 50 i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~ 129 (310)
T PRK10559 50 IAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANN 129 (310)
T ss_pred EccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 788999999999999999999999999998300
Q ss_pred -----------------------eEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 685 -----------------------MEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 685 -----------------------m~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
-...|+||.+|+|.++.+++|+.|.+|++|+.|.+.+
T Consensus 130 ~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~ 189 (310)
T PRK10559 130 VLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQN 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCC
Confidence 0357999999999999999999999999999887543
No 149
>PLN02235 ATP citrate (pro-S)-lyase
Probab=98.03 E-value=0.00011 Score=81.51 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=83.3
Q ss_pred HHHHHHHHHC-----CCCCCCccccCCCCHHHHHHHHHH---hCCc-EEEeecCCCCCcc----EEEECChhHHHHHHHH
Q 041518 152 SASKRIMGAA-----GVPLVPGYHGNEQDIDLMKSEAAK---IGYP-ILIKPTHGGGGKG----MRIVQSPNDFVDSFLG 218 (765)
Q Consensus 152 ~~~r~~l~~~-----Gvpvp~~~~~~~~s~~e~~~~~~~---ig~P-vVVKP~~g~Gg~G----v~~v~s~~el~~a~~~ 218 (765)
+..|++|+++ |||+|++... +.+.+++.+++++ ++.| +||||---.|||| |.+++|++|+.++.++
T Consensus 9 yqaK~ll~~~~~~~~gipvP~~~v~-~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~ 87 (423)
T PLN02235 9 YDSKRLLKEHLKRLAGIDLPIRSAQ-VTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKE 87 (423)
T ss_pred HHHHHHHHHhhcccCCCCCCCCeec-cCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHH
Confidence 5678888888 9999998754 2588999999888 7775 6999998887774 8999999999999888
Q ss_pred HHHHHHhcC----CCCcEEEecccCCCeeEEEEEEEeccccEEEE
Q 041518 219 AQREAAASF----GINTILLEKYITQPRHIEVQIFGDKYGKVLHL 259 (765)
Q Consensus 219 ~~~ea~~~f----g~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l 259 (765)
......... .-..+|||++++-.+|+-+.++.|.....+.+
T Consensus 88 ~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~ 132 (423)
T PLN02235 88 RLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISF 132 (423)
T ss_pred HhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEE
Confidence 764321000 11378999999978999999999987666433
No 150
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=98.03 E-value=1.2e-05 Score=81.49 Aligned_cols=103 Identities=18% Similarity=0.351 Sum_probs=73.1
Q ss_pred HHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCc-EEEeecCCCCCc----cEEEECChhHHHHHHHHHHHHHHh
Q 041518 151 KSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYP-ILIKPTHGGGGK----GMRIVQSPNDFVDSFLGAQREAAA 225 (765)
Q Consensus 151 K~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~P-vVVKP~~g~Gg~----Gv~~v~s~~el~~a~~~~~~ea~~ 225 (765)
.+..|++|+++|||+|++.... +++++.+.+..+|.| +|+||---.||| ||.+++|++|+.++.++.......
T Consensus 4 EyqaK~ll~~~gi~vp~g~~a~--s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRGVVAT--SPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SEEEES--SHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCeeecC--CHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 4678999999999999998766 999999999999975 799998777665 599999999999887776532100
Q ss_pred -------cCCCCcEEEecccCCCeeEEEEEEEecccc
Q 041518 226 -------SFGINTILLEKYITQPRHIEVQIFGDKYGK 255 (765)
Q Consensus 226 -------~fg~~~vlVEeyI~ggrei~v~v~~d~~g~ 255 (765)
...-..+|||++++-.+|+-+.+..|....
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~ 118 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESR 118 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTT
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCC
Confidence 000147899999998899999999886543
No 151
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.96 E-value=1.3e-05 Score=72.86 Aligned_cols=51 Identities=22% Similarity=0.364 Sum_probs=44.4
Q ss_pred CcceEEEEEc-CCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCC
Q 041518 656 MAGLVVKVLA-NDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQ 706 (765)
Q Consensus 656 ~~G~v~~~~v-~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~ 706 (765)
+-|.|+.+.. ++|+.|++||++++||+||+..+|.||.+|+|.+++-+..+
T Consensus 28 ~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 28 NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 5677887776 66999999999999999999999999999999999755443
No 152
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.92 E-value=1.5e-05 Score=86.53 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=63.3
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecc---------------------------------------------
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMK--------------------------------------------- 684 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamK--------------------------------------------- 684 (765)
..|.||.+|+|.+++|++||.|++||+|+.++.-.
T Consensus 27 ~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~ 106 (322)
T TIGR01730 27 ADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDD 106 (322)
T ss_pred EEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 46899999999999999999999999999997210
Q ss_pred --------------------------eEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 685 --------------------------MEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 685 --------------------------m~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
-...|+||.+|+|..+.+++|+.|.+|++|+.|...+
T Consensus 107 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 107 AKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 1347999999999999999999999999999997653
No 153
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.90 E-value=2.6e-05 Score=87.48 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=32.4
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..|+||.+|+|..+.+++|+.|.+|++|+.|.+.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 57999999999999999999999999999997654
No 154
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.90 E-value=2.5e-05 Score=85.75 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=32.5
Q ss_pred EEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 686 EHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 686 ~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
...|+||.+|+|..+.+.+|+.|.+|++|+.|.+.+
T Consensus 203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~ 238 (331)
T PRK03598 203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTR 238 (331)
T ss_pred cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCC
Confidence 358999999999999999999999999999997553
No 155
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.88 E-value=0.00046 Score=72.05 Aligned_cols=177 Identities=17% Similarity=0.163 Sum_probs=107.7
Q ss_pred HHHHHhcCHHHHHHHHHHCC--CCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHH
Q 041518 143 SAIRDMGDKSASKRIMGAAG--VPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQ 220 (765)
Q Consensus 143 eai~~~~DK~~~r~~l~~~G--vpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~ 220 (765)
.....+.||+..|+.+++.+ ...||... ..++.+++. ...+.-++||||..|+|+..|..-.+.-+...+...+.
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll~-v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~ 89 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLLG-VYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLN 89 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECceee-cCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHH
Confidence 34557899999999999986 33444332 224555543 23566789999999999888887665544444433332
Q ss_pred HHHHhcCC-----------CCcEEEecccCCC-----eeEEEEEEEeccccEEEE--------------Eeeeccccccc
Q 041518 221 REAAASFG-----------INTILLEKYITQP-----RHIEVQIFGDKYGKVLHL--------------YERDCSVQRRH 270 (765)
Q Consensus 221 ~ea~~~fg-----------~~~vlVEeyI~gg-----rei~v~v~~d~~g~vv~l--------------~~r~~s~~~~~ 270 (765)
.-....++ ...+++|++|+.. .+|-+-+|. |.+..+ ++++-......
T Consensus 90 ~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~---G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~ 166 (239)
T PF14305_consen 90 RWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFN---GKPKFIQVDSDRFGNHKRNFYDRDWNRLPFR 166 (239)
T ss_pred HHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEEC---CEEEEEEEEeCCCCCeEEEEECcccCCCccc
Confidence 21111111 2689999999843 345555552 322222 11110000000
Q ss_pred eeeeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccCCcc
Q 041518 271 QKIIEEAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRLQVE 332 (765)
Q Consensus 271 ~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~ 332 (765)
.. .. .....-.++..++|.++|+++.+.+.+ +.|||... +|++||=|+...++.+
T Consensus 167 ~~-~~-~~~~~~kP~~l~emi~iA~~Ls~~f~f---vRVDlY~~--~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 167 SD-YP-PDEDIPKPKNLEEMIEIAEKLSKGFPF---VRVDLYNV--DGKIYFGELTFTPGAG 221 (239)
T ss_pred cC-CC-CCCCCCCChhHHHHHHHHHHHccCCCE---EEEEEEEe--CCcEEEEeeecCCCCc
Confidence 00 00 111123356678999999998887654 79999998 6889999999999744
No 156
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.88 E-value=1.3e-05 Score=62.45 Aligned_cols=35 Identities=29% Similarity=0.570 Sum_probs=30.7
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecc
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMK 684 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamK 684 (765)
..|.||++|+|.+|+|++||.|++||+|++|+...
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 35889999999999999999999999999998643
No 157
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=97.88 E-value=9.2e-06 Score=85.12 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 659 LVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 659 ~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
+|.+|+|++||.|++=|.||++++.|...+|.+-++|+|+++..+++|....|++|+.++-++
T Consensus 80 ~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~ 142 (474)
T KOG0558|consen 80 TVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVED 142 (474)
T ss_pred eeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeecc
Confidence 688999999999999999999999999999999999999999999999999999999997543
No 158
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.87 E-value=2.6e-05 Score=87.75 Aligned_cols=71 Identities=23% Similarity=0.419 Sum_probs=60.7
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec----------------------------------------------
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM---------------------------------------------- 683 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam---------------------------------------------- 683 (765)
..|.++.+|+|.+++|++||.|++||+|+.|+.-
T Consensus 66 ~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~ 145 (397)
T PRK15030 66 AEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQ 145 (397)
T ss_pred EEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 4588999999999999999999999999999710
Q ss_pred ------------------------c-eEEEEEcCCCeEEEEEEcCCCCccCCCCe--EEEEEeC
Q 041518 684 ------------------------K-MEHVVKAPTTGVVHGLQVTAGQQVSDGSV--LFRLQAV 720 (765)
Q Consensus 684 ------------------------K-m~~~i~ap~~G~v~~~~~~~G~~v~~g~~--l~~i~~~ 720 (765)
+ -...|+||++|+|.+..+++|+.|.+|++ |+.|...
T Consensus 146 a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 146 ALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 209 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEec
Confidence 0 13579999999999999999999999984 7777544
No 159
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.83 E-value=3.7e-05 Score=86.16 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=61.6
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec----------------------------------------------
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM---------------------------------------------- 683 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam---------------------------------------------- 683 (765)
..|.++++|+|.+++|++||.|++||+|+.|+.-
T Consensus 64 ~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~ 143 (385)
T PRK09578 64 AEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE 143 (385)
T ss_pred EEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4589999999999999999999999999999721
Q ss_pred --------c-----------------eEEEEEcCCCeEEEEEEcCCCCccCCC--CeEEEEEeCc
Q 041518 684 --------K-----------------MEHVVKAPTTGVVHGLQVTAGQQVSDG--SVLFRLQAVH 721 (765)
Q Consensus 684 --------K-----------------m~~~i~ap~~G~v~~~~~~~G~~v~~g--~~l~~i~~~~ 721 (765)
+ -...|+||++|+|.+.++++|+.|.+| ++|+.|...+
T Consensus 144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~ 208 (385)
T PRK09578 144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLD 208 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecC
Confidence 0 124799999999999999999999986 5898887543
No 160
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.80 E-value=3.7e-05 Score=86.16 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=61.0
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec----------------------------------------------
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM---------------------------------------------- 683 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam---------------------------------------------- 683 (765)
..|.++.+|+|.+++|++||.|++||+|+.|+.-
T Consensus 62 ~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~ 141 (385)
T PRK09859 62 AEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDT 141 (385)
T ss_pred EEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 3489999999999999999999999999999810
Q ss_pred -------------------------ceEEEEEcCCCeEEEEEEcCCCCccCCCC--eEEEEEeC
Q 041518 684 -------------------------KMEHVVKAPTTGVVHGLQVTAGQQVSDGS--VLFRLQAV 720 (765)
Q Consensus 684 -------------------------Km~~~i~ap~~G~v~~~~~~~G~~v~~g~--~l~~i~~~ 720 (765)
--...|+||++|+|.+..+.+|+.|.+|+ +|+.|...
T Consensus 142 a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 142 ARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence 01357999999999999999999999985 68887654
No 161
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=97.70 E-value=0.00049 Score=61.43 Aligned_cols=93 Identities=16% Similarity=0.203 Sum_probs=61.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHCC-C-eEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 39 KILIANRGEIAYRIMRTAKRLG-I-RTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~G-i-~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
||||+|+|.--..++.++++.- . ++++... ++ ......+.+.+ +..|.+.|+++|+++++|.+++|
T Consensus 2 kVLviGsGgREHAia~~l~~s~~v~~v~~aPG--N~---G~~~~~~~~~~-------~~~d~~~l~~~a~~~~idlvvvG 69 (100)
T PF02844_consen 2 KVLVIGSGGREHAIAWKLSQSPSVEEVYVAPG--NP---GTAELGKNVPI-------DITDPEELADFAKENKIDLVVVG 69 (100)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTEEEEEEEE----T---TGGGTSEEE-S--------TT-HHHHHHHHHHTTESEEEES
T ss_pred EEEEECCCHHHHHHHHHHhcCCCCCEEEEeCC--CH---HHHhhceecCC-------CCCCHHHHHHHHHHcCCCEEEEC
Confidence 8999999855555777777653 2 3333322 22 22222333444 34889999999999999999999
Q ss_pred CCcccccH---HHHHHHHHCCCcEECCcHHHHHH
Q 041518 117 YGFLSESA---DFAQLCGDNGLTFIGPPVSAIRD 147 (765)
Q Consensus 117 ~g~lsE~~---~~a~~~~~~Gl~~~Gp~~eai~~ 147 (765)
. |.+ .+++.+++.|++++||+.++.++
T Consensus 70 P----E~pL~~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 70 P----EAPLVAGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp S----HHHHHTTHHHHHHHTT-CEES--HHHHHH
T ss_pred C----hHHHHHHHHHHHHHCCCcEECcCHHHHhc
Confidence 6 443 56899999999999999988765
No 162
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.70 E-value=7.7e-05 Score=68.33 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=43.0
Q ss_pred CCcceEEEEEc-CCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcC
Q 041518 655 PMAGLVVKVLA-NDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVT 703 (765)
Q Consensus 655 p~~G~v~~~~v-~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~ 703 (765)
-+-|.|+.+.. ++|+.|++||++++||+||+..+|.||.+|+|.+++-+
T Consensus 29 ~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~ 78 (114)
T PRK00624 29 ENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA 78 (114)
T ss_pred HhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence 35677887776 66999999999999999999999999999999999643
No 163
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.67 E-value=6.3e-05 Score=70.53 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=52.1
Q ss_pred cCCCcceEEEEEc-CCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCc---cC----CCCeEEEEEeCc
Q 041518 653 LSPMAGLVVKVLA-NDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQ---VS----DGSVLFRLQAVH 721 (765)
Q Consensus 653 ~ap~~G~v~~~~v-~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~---v~----~g~~l~~i~~~~ 721 (765)
...+.|.|..+.. ++|+.|++||++++||+||+..+|.||.+|+|.+++-..-+. +. ...=|++|...+
T Consensus 31 a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~ 107 (127)
T TIGR00527 31 AQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSD 107 (127)
T ss_pred HhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCC
Confidence 3446777876654 579999999999999999999999999999999998654432 11 123566666544
No 164
>PRK12784 hypothetical protein; Provisional
Probab=97.61 E-value=0.0003 Score=58.19 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=64.3
Q ss_pred cccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEE-EEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 651 SVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHV-VKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~-i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
.|.||.-|+|.+++|.+++.|-+=++|+.|+.|.-+.+ |.--.+|-|..+.+.+||.|..+.+|+.++++
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 48999999999999999999999999999999966554 66688999999999999999999999999875
No 165
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.60 E-value=9.8e-05 Score=82.31 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=60.0
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecc---------------------------------------------
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMK--------------------------------------------- 684 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamK--------------------------------------------- 684 (765)
..|.||++|.|.+++|++||.|++||+|+.|+.-.
T Consensus 62 ~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~i 141 (370)
T PRK11578 62 VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAV 141 (370)
T ss_pred EEEecccceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35899999999999999999999999999998510
Q ss_pred ----------------------------------------eEEEEEcCCCeEEEEEEcCCCCccCCC---CeEEEEEeC
Q 041518 685 ----------------------------------------MEHVVKAPTTGVVHGLQVTAGQQVSDG---SVLFRLQAV 720 (765)
Q Consensus 685 ----------------------------------------m~~~i~ap~~G~v~~~~~~~G~~v~~g---~~l~~i~~~ 720 (765)
-...|+||++|+|..+++..|+.|.+| ++|+.|...
T Consensus 142 s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~ 220 (370)
T PRK11578 142 SQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 220 (370)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecC
Confidence 023799999999999999999999776 368877543
No 166
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.59 E-value=9.8e-05 Score=83.55 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=60.5
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec----------------------------------------------
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM---------------------------------------------- 683 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam---------------------------------------------- 683 (765)
..|.++++|+|.+++|++||.|++||+|+.|+.-
T Consensus 88 v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~ 167 (415)
T PRK11556 88 VTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDA 167 (415)
T ss_pred EEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 4589999999999999999999999999999621
Q ss_pred ------------------------c-eEEEEEcCCCeEEEEEEcCCCCccCCCC--eEEEEEeC
Q 041518 684 ------------------------K-MEHVVKAPTTGVVHGLQVTAGQQVSDGS--VLFRLQAV 720 (765)
Q Consensus 684 ------------------------K-m~~~i~ap~~G~v~~~~~~~G~~v~~g~--~l~~i~~~ 720 (765)
. -...|+||++|+|....+.+|+.|.+|+ +|+.|...
T Consensus 168 ~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~ 231 (415)
T PRK11556 168 QQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQT 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecC
Confidence 0 1347999999999999999999999984 67777543
No 167
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.52 E-value=0.00027 Score=73.01 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=61.7
Q ss_pred CCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcc
Q 041518 648 PPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHI 722 (765)
Q Consensus 648 ~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~ 722 (765)
.+.-|+||.+|.+.. .++.||.|+|||+|+.++. .+|+||.+|+|.-+ ++.|-.|.+|.-|+.|.+...
T Consensus 163 ~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dIDPR~~ 231 (256)
T TIGR03309 163 HERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVDPRGE 231 (256)
T ss_pred ceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEECCCCC
Confidence 346799999997766 8999999999999999986 79999999999875 899999999999999998753
No 168
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.45 E-value=0.0046 Score=61.20 Aligned_cols=167 Identities=18% Similarity=0.173 Sum_probs=95.9
Q ss_pred CcHHHHHHhcCHHHHHH----HHHHC---CCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHH
Q 041518 140 PPVSAIRDMGDKSASKR----IMGAA---GVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDF 212 (765)
Q Consensus 140 p~~eai~~~~DK~~~r~----~l~~~---Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el 212 (765)
++..++-.+.||-.... +.++. .+|..+....+ +..+. .....||+|||--.+.+|.|=.+|+|..++
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~yp--nh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~ 75 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYP--NHREM---LSAPRFPVVVKVGHAHAGMGKVKVDNQQDF 75 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEES--SGGGG---CS-SSSSEEEEESS-STTTTEEEE-SHHHH
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecC--Chhhh---ccCCCCCEEEEEccccCceeEEEEccHHHH
Confidence 35677888888865432 33444 35555443333 33332 233579999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeecc-c-c-ccceeeeeecCCCCCCHHHHHH
Q 041518 213 VDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCS-V-Q-RRHQKIIEEAPAPNVTHDFRAL 289 (765)
Q Consensus 213 ~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s-~-~-~~~~k~~e~~Pa~~l~~~~~~~ 289 (765)
++...-+... ..-+-+|.||+-..++.+|-+++ +..++..+.-+ . . .-.....|..+. + ++
T Consensus 76 qDi~sll~~~------~~Y~T~EPfId~kyDirvqkIG~---~ykA~~R~sis~nWK~N~gsa~lEqi~~---~----~r 139 (203)
T PF02750_consen 76 QDIASLLAIT------KDYATTEPFIDAKYDIRVQKIGN---NYKAYMRTSISGNWKANTGSAMLEQIAM---T----ER 139 (203)
T ss_dssp HHHHHHHHHH------TS-EEEEE---EEEEEEEEEETT---EEEEEEEEESSSTSSTTSSSEEEEEE----------HH
T ss_pred HHHHHHHHhc------CceEEeeccccceeEEEEEEEcC---eEEEEEEccccccccccccchheeecCC---C----hH
Confidence 8765554432 46788999998656777777643 34444322111 0 0 001112333332 2 45
Q ss_pred HHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEeccc
Q 041518 290 LGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTR 328 (765)
Q Consensus 290 l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R 328 (765)
....+.++.+.+|--..+.+|.+..+ ||+-|++|+|--
T Consensus 140 yk~Wvd~~s~lfGGlDI~~v~ai~~k-dGke~Iievnds 177 (203)
T PF02750_consen 140 YKLWVDECSELFGGLDICAVDAIHGK-DGKEYIIEVNDS 177 (203)
T ss_dssp HHHHHHHHGGGGG--SEEEEEEEEET-TS-EEEEEEE-T
T ss_pred HHHHHHHHHHHcCCccEEEEEEEEcC-CCCEEEEEecCC
Confidence 56677777888855578999999998 999999999954
No 169
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.43 E-value=0.0001 Score=80.31 Aligned_cols=31 Identities=39% Similarity=0.571 Sum_probs=23.7
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
..|.||.+|+| +++|++||.|++||+|+.++
T Consensus 22 ~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld 52 (328)
T PF12700_consen 22 VSVSAPVSGRV-SVNVKEGDKVKKGQVLAELD 52 (328)
T ss_dssp EEE--SS-EEE-EE-S-TTSEEETT-EEEEEE
T ss_pred EEEECCCCEEE-EEEeCCcCEECCCCEEEEEE
Confidence 56899999999 99999999999999999998
No 170
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.34 E-value=0.0041 Score=60.16 Aligned_cols=31 Identities=35% Similarity=0.749 Sum_probs=29.4
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVL 680 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ 680 (765)
..|.||..|+|.++++++||.|+.||.|+.|
T Consensus 122 ~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 122 NEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred eEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 5799999999999999999999999999986
No 171
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.34 E-value=0.00029 Score=54.89 Aligned_cols=36 Identities=36% Similarity=0.570 Sum_probs=33.2
Q ss_pred EEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 686 EHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 686 ~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
...|.||.+|+|.++++++||.|++|++|++|+..+
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 357999999999999999999999999999998764
No 172
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.31 E-value=0.00071 Score=76.49 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=30.4
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
...|.||.+|+|.+++|++||.|++||+|+.++
T Consensus 43 ~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 43 VKVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred eeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 355899999999999999999999999999885
No 173
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.29 E-value=0.00066 Score=74.31 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=30.6
Q ss_pred CcccCCCc---ceEEEEEcCCCCeecCCCeEEEEEe
Q 041518 650 GSVLSPMA---GLVVKVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 650 ~~v~ap~~---G~v~~~~v~~Gd~V~~G~~l~~~ea 682 (765)
..|.++.+ |+|.+++|++||.|++||+|+.|+.
T Consensus 14 ~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence 36889999 9999999999999999999999983
No 174
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=96.99 E-value=0.0022 Score=72.76 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=31.3
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
..|+||++|+|..+.+.+|+.|.+|++|+.|.+.
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 287 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEVE 287 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEcc
Confidence 4699999999999999999999999999999643
No 175
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=96.91 E-value=0.0045 Score=66.69 Aligned_cols=43 Identities=19% Similarity=0.476 Sum_probs=24.5
Q ss_pred cEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCC
Q 041518 189 PILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQ 240 (765)
Q Consensus 189 PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~g 240 (765)
-.|+||..++.|+|++++++.+++... .......++||+||+.
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~ 109 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIEN 109 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SS
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCC
Confidence 499999999999999999999888754 1123579999999985
No 176
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.91 E-value=0.0056 Score=68.95 Aligned_cols=186 Identities=17% Similarity=0.155 Sum_probs=104.8
Q ss_pred CCEEEEEcCcHH-----HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCC
Q 041518 37 IEKILIANRGEI-----AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQ 111 (765)
Q Consensus 37 ~kkILI~g~G~~-----a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~D 111 (765)
..+|.|+.--+. =....+..++.|+.+++++.. ...+.|.....+. .-+|.|-..+-...
T Consensus 185 ~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~------~L~y~~g~L~~~~-------~~ID~VyRR~Vt~e-- 249 (445)
T PF14403_consen 185 KPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPR------DLEYRDGRLYAGG-------RPIDAVYRRFVTSE-- 249 (445)
T ss_pred CCcEEEEecccCCccchHHHHHHHHHHcCCceEecChH------HceecCCEEEECC-------EeeehhhHhhhhHH--
Confidence 357777762211 235677788999998886433 1223344443322 12233333332211
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCC------------CCCccccCCC-----
Q 041518 112 AIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVP------------LVPGYHGNEQ----- 174 (765)
Q Consensus 112 aV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvp------------vp~~~~~~~~----- 174 (765)
+++-++ +...+.++...--+..+ ++-...++.||..+.-+-....-. .+|++.....
T Consensus 250 -~l~~~d---~~~~li~Ay~~~av~~v--gsfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~ 323 (445)
T PF14403_consen 250 -LLERYD---EVQPLIQAYRDGAVCMV--GSFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTY 323 (445)
T ss_pred -hhhccc---cchHHHHHHhcCCeEEe--cchhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccc
Confidence 122222 33456666666666666 445667788887765443322211 1222222211
Q ss_pred --CHHHHHHHHHHhCCcEEEeecCCCCCccEEE--ECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEE
Q 041518 175 --DIDLMKSEAAKIGYPILIKPTHGGGGKGMRI--VQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFG 250 (765)
Q Consensus 175 --s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~--v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~ 250 (765)
+..++.+++...---+|+||.++.||+||.+ =.++++.+++++++. ++++|+|||+. +.......+.
T Consensus 324 ~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--------~~~yilQe~v~-~~~~~~~~~~ 394 (445)
T PF14403_consen 324 QGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--------REPYILQEYVR-PPREPMPAFE 394 (445)
T ss_pred cccchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh--------cCCcEEEEEec-CCcccccccc
Confidence 2345555555555679999999999999998 456778888887765 36999999998 4433333444
Q ss_pred ec
Q 041518 251 DK 252 (765)
Q Consensus 251 d~ 252 (765)
++
T Consensus 395 dg 396 (445)
T PF14403_consen 395 DG 396 (445)
T ss_pred CC
Confidence 43
No 177
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=96.89 E-value=0.0022 Score=70.28 Aligned_cols=34 Identities=41% Similarity=0.630 Sum_probs=31.3
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
..|+||.+|+|.+..+++|+.|.+|.+|+.+-+.
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~ 242 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPL 242 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEecc
Confidence 4599999999999999999999999999988764
No 178
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.87 E-value=0.0025 Score=59.50 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=45.1
Q ss_pred cceEEEEEc-CCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCc---cC----CCCeEEEEEeCc
Q 041518 657 AGLVVKVLA-NDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQ---VS----DGSVLFRLQAVH 721 (765)
Q Consensus 657 ~G~v~~~~v-~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~---v~----~g~~l~~i~~~~ 721 (765)
-|.|+.+.. ++|+.|++|++++.||+.|...++.||.+|+|.+++-..-+. +. ...=|+.|.+.+
T Consensus 30 lG~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~~d 102 (122)
T PF01597_consen 30 LGDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKPSD 102 (122)
T ss_dssp H-SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEESC
T ss_pred CCceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChHHhccCCCCCCeEEEEEeCC
Confidence 366776654 569999999999999999999999999999999998543322 11 123477887754
No 179
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.86 E-value=0.0032 Score=56.62 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=41.2
Q ss_pred cCCCcceEE-----------EEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEE
Q 041518 653 LSPMAGLVV-----------KVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQ 701 (765)
Q Consensus 653 ~ap~~G~v~-----------~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~ 701 (765)
.+|+|.+++ +..|++||.|++||.|+.-+. -+...|.||.+|+|+.|.
T Consensus 23 ~~~~p~~v~ipL~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 23 EAPLPKKVVIPLRQHIGAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE 81 (101)
T ss_pred ECCCcCEEEEECcccCCCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence 455666555 789999999999999999987 668999999999999885
No 180
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.0068 Score=64.39 Aligned_cols=201 Identities=14% Similarity=0.140 Sum_probs=123.5
Q ss_pred HHhCCCEEEeCCCc--cccc---HHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHH----HHHHCC---CCCCCccccCC
Q 041518 106 IRTGAQAIHPGYGF--LSES---ADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKR----IMGAAG---VPLVPGYHGNE 173 (765)
Q Consensus 106 ~~~~~DaV~pg~g~--lsE~---~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~----~l~~~G---vpvp~~~~~~~ 173 (765)
+...+|+|+.+-+. ..++ ..+...+...|||++ ++...+..+.||-..+. +....| +|..+.....
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yP- 229 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYP- 229 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecC-
Confidence 45677888877432 2333 345567788999998 88999999999865543 445556 5555543322
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEecc
Q 041518 174 QDIDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKY 253 (765)
Q Consensus 174 ~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~ 253 (765)
+-.+. ...-.||+|||--.+..|.|=.+|+|.+|+.+.-.-.. .. +...-+|.||+..-++.||-++...
T Consensus 230 -nHK~m---~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svva-l~-----~Tyat~epFiDaKYDiriQKIG~nY 299 (488)
T KOG3895|consen 230 -NHKEM---LSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVA-LT-----KTYATAEPFIDAKYDIRIQKIGHNY 299 (488)
T ss_pred -Cchhh---ccCCCCcEEEEecccccccceeeecchhhhHhHHHHHH-HH-----hhhhhccccccccceeehhhhhhhH
Confidence 22222 22335999999999999999999999999887433222 11 2456689999965567777665432
Q ss_pred ccEEEEEeeeccccccceeeeeecCCCCCC-HHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecc
Q 041518 254 GKVLHLYERDCSVQRRHQKIIEEAPAPNVT-HDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNT 327 (765)
Q Consensus 254 g~vv~l~~r~~s~~~~~~k~~e~~Pa~~l~-~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~ 327 (765)
-.+..+ ++ ..|+|...++.- |. -..-++-.-+...+-+.+|--..+.|+.+... +|+=|++|+|-
T Consensus 300 ---KaymRt--sI-sgnWKtNtGSam--LEQIamseRyklwvdtcse~fGgldICav~alhsK-dGrd~i~eV~d 365 (488)
T KOG3895|consen 300 ---KAYMRT--SI-SGNWKTNTGSAM--LEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSK-DGRDYIIEVMD 365 (488)
T ss_pred ---HHHhhh--hh-ccCcccCchHHH--HHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecc-cchhheeeecc
Confidence 222111 11 123332221110 00 01112333344455666676678889999987 99999999987
No 181
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=96.67 E-value=0.0078 Score=58.91 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=62.0
Q ss_pred CcEEEecccCCCeeEEEEEEEeccccEEEEEeeeccccc------c----c-------ee--eeeecCCCCCCHHHHHHH
Q 041518 230 NTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQR------R----H-------QK--IIEEAPAPNVTHDFRALL 290 (765)
Q Consensus 230 ~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~------~----~-------~k--~~e~~Pa~~l~~~~~~~l 290 (765)
.++.|||||- |-++.+..|...--+-+-+..-|-.++. | . .. .....|+ .+.+.+.+++
T Consensus 21 ~~~~IeEyvi-G~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~-vlRESLL~~v 98 (188)
T PF06973_consen 21 ENAIIEEYVI-GVPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPA-VLRESLLPKV 98 (188)
T ss_dssp CCEEEEE----SEEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEE-EE-GGGHHHH
T ss_pred cccEEEEEec-CceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCccc-chhHhhHHHH
Confidence 6899999999 5788888887642233343221111111 0 0 00 1112365 5778888999
Q ss_pred HHHHHHHHHHc------CCCceeEEEEEEECCCCcEEEEEecccCCccc
Q 041518 291 GQAAVSAAKAV------SYHNAGTVEFIVDTVSDQFYFMEMNTRLQVEH 333 (765)
Q Consensus 291 ~~~a~~i~~al------g~~G~~~vEf~~~~~~g~~~~iEiN~R~~~~~ 333 (765)
.+++.+++++. |+-|++.+|.++++ +.++++.|+.+|+.++.
T Consensus 99 fe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~-dle~vvfevS~RI~gGT 146 (188)
T PF06973_consen 99 FEMGERFVEASKELVPPGMIGPFCLQSIVTD-DLEFVVFEVSARIVGGT 146 (188)
T ss_dssp HHHHHHHHHHHHHHSTT---EEEEEEEEE-T-TSSEEEEEEESSB-GGG
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEEEEcC-CceEEEEEEeccccCCC
Confidence 99998888765 88899999999998 88999999999998543
No 182
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=96.61 E-value=0.0018 Score=59.36 Aligned_cols=117 Identities=17% Similarity=0.269 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHCCCeEEEEecCCCC-CCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCCcccccH
Q 041518 46 GEIAYRIMRTAKRLGIRTVAVYSDADR-DSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESA 124 (765)
Q Consensus 46 G~~a~~iiraar~~Gi~vvav~s~~d~-~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g~lsE~~ 124 (765)
...|+.|.+-||+.|++|+++...... ......++|+.+.++.-. +.++ +.+.+-+++. ++|+.-.|.+.+..
T Consensus 6 SHSALqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~---di~~-~~~q~~L~~~--N~I~VPhgSfv~Y~ 79 (124)
T PF06849_consen 6 SHSALQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSFS---DILS-EEVQEKLREM--NAIFVPHGSFVAYV 79 (124)
T ss_dssp STTHHHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSCG---HCCS-HHHHHHHHHT--TEEE--BTTHHHHH
T ss_pred chHHHHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCHH---HHHh-HHHHHHHHHC--CeEEecCCCeeEee
Confidence 456899999999999999998654321 122234789999875311 1122 2455555444 45666556665544
Q ss_pred HHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCcc
Q 041518 125 DFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGY 169 (765)
Q Consensus 125 ~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~ 169 (765)
..-..-.+..+|++|+. ..++.-.|...-+.+|+++|||.|+-+
T Consensus 80 G~d~ie~~~~vP~FGNR-~lLrwEseR~~~~~lL~~AgI~~P~~~ 123 (124)
T PF06849_consen 80 GYDRIENEFKVPIFGNR-NLLRWESERDKERNLLEKAGIPMPRKF 123 (124)
T ss_dssp -HHHHHHT-SS-EES-C-CGGHCCCSHHHHHHHHHHTT-BB--BE
T ss_pred cHHHHhhcCCCCeecCh-HHHHhhhhhhhHHHHHHHcCCCCCccC
Confidence 44334344999999854 566666688888899999999999743
No 183
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.58 E-value=0.0054 Score=51.43 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=37.7
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcceee----eecceee
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQLA----VHGFVVQ 732 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~~~~----~~~~~~~ 732 (765)
-.|+||.+|+|.++++++||.|++|++|+.++....... ..|++.+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~ 52 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSK 52 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEE
Confidence 459999999999999999999999999999997654333 2555554
No 184
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=96.50 E-value=0.045 Score=58.62 Aligned_cols=151 Identities=20% Similarity=0.258 Sum_probs=100.0
Q ss_pred HHHHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHH
Q 041518 103 DAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSE 182 (765)
Q Consensus 103 ~~a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~ 182 (765)
+-+.+.++....--+|.....+-++.....++++ ++. +..- .-+...+.++..=-+.|+++++ +.+|+..+
T Consensus 59 ~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L~--~~~--a~aP---~GW~~~fa~~~~~~vL~G~tvF--s~~DA~~A 129 (355)
T PF11379_consen 59 AQAARLGIRGEQDLFGGVVPHAFVATKAITHPLV--GPD--AAAP---AGWSPAFAERVRDAVLPGYTVF--SREDARRA 129 (355)
T ss_pred hHHHHcCCCChHhccCCCcCcceeeeccccCcCC--CCC--CCCC---CCcCHHHHHHHhhhccCCcccc--CHHHHHHH
Confidence 5677788865554455544444445555555553 111 1111 1223345555555677888877 99999988
Q ss_pred HHHh--CCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEE
Q 041518 183 AAKI--GYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLY 260 (765)
Q Consensus 183 ~~~i--g~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~ 260 (765)
+..+ +.||=+||..+.||+|-.++.+.++|+.++...-..... ...+++|+-|+...-++|.-+.-+ |..+.++
T Consensus 130 ~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~T~SVGqv~v~-g~~~SY~ 205 (355)
T PF11379_consen 130 ARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVVTYSVGQVRVA-GLVASYY 205 (355)
T ss_pred HHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCceeeEEEEEEC-CEEEEEe
Confidence 7764 579999999999999999999999999999876544332 368999999998777888665443 3444444
Q ss_pred eeeccc
Q 041518 261 ERDCSV 266 (765)
Q Consensus 261 ~r~~s~ 266 (765)
...+..
T Consensus 206 GtQ~lT 211 (355)
T PF11379_consen 206 GTQRLT 211 (355)
T ss_pred eEeecc
Confidence 433333
No 185
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.46 E-value=0.0086 Score=49.97 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=30.8
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
...+.||..|+|.++++++||.|+.||+|++||
T Consensus 38 ~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 38 EIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred cceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 356999999999999999999999999999986
No 186
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0057 Score=56.83 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=52.2
Q ss_pred CCcceEEEEE-cCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCc---c---CCC-CeEEEEEeCcc
Q 041518 655 PMAGLVVKVL-ANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQ---V---SDG-SVLFRLQAVHI 722 (765)
Q Consensus 655 p~~G~v~~~~-v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~---v---~~g-~~l~~i~~~~~ 722 (765)
-+-|.|+-+. -++|+.|++|+.+++||+-|.-.+|.||.+|.|.+++-..-+. | ..| .=|+.|...+.
T Consensus 36 ~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~klk~~d~ 111 (131)
T COG0509 36 DQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKLKPADP 111 (131)
T ss_pred HhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhcChhhhccCCCCCceEEEEeeCCh
Confidence 3567888775 5889999999999999999999999999999999987443322 2 223 25667766653
No 187
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.21 E-value=0.017 Score=62.98 Aligned_cols=67 Identities=27% Similarity=0.326 Sum_probs=55.1
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec----ceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM----KMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam----Km~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
..|+||.+|.+ ...++.||.|++||+|++|-.. ....+|+||.+|+|.-.. ..-.|..|+.|+.|..
T Consensus 245 ~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~~ 315 (316)
T cd06252 245 CYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLAA 315 (316)
T ss_pred EEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEec
Confidence 56899999955 5779999999999999999764 456889999999997554 4456899999998754
No 188
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.14 E-value=0.017 Score=62.37 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=54.7
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEEec---ceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM---KMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam---Km~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
...|+||.+|.+ ...++.||.|++||+|+.|=.. ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence 456899999955 5569999999999999999653 456789999999997654 55689999999876
No 189
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.14 E-value=0.013 Score=61.88 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=18.2
Q ss_pred ccCCCcceEEEEEcCCCCeecCCCeEEEE
Q 041518 652 VLSPMAGLVVKVLANDGTKVEEGQPILVL 680 (765)
Q Consensus 652 v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ 680 (765)
|+||+.|.|..+.+++|+.|..|++|+.|
T Consensus 91 i~AP~dG~V~~~~~~~G~~v~~g~~l~~i 119 (265)
T TIGR00999 91 VRSPFDGYITQKSVTLGDYVAPQAELFRV 119 (265)
T ss_pred EECCCCeEEEEEEcCCCCEeCCCCceEEE
Confidence 46666666666666666666666666654
No 190
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.09 E-value=0.02 Score=61.54 Aligned_cols=65 Identities=34% Similarity=0.462 Sum_probs=53.2
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec--ceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM--KMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam--Km~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
..++||.+|.+. ..++.||.|++||+|+.+... ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence 468999999765 589999999999999999642 223789999999996544 55578999999876
No 191
>PF13437 HlyD_3: HlyD family secretion protein
Probab=96.07 E-value=0.024 Score=51.04 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=48.9
Q ss_pred cccCCCcceEEEEEcCCCCeecCCCeEEEEEecc-eEEEEEcCCCeEEEEEEcCCCCccC-CCCeEEEEEeCcceeeeec
Q 041518 651 SVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMK-MEHVVKAPTTGVVHGLQVTAGQQVS-DGSVLFRLQAVHIQLAVHG 728 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamK-m~~~i~ap~~G~v~~~~~~~G~~v~-~g~~l~~i~~~~~~~~~~~ 728 (765)
.|+||+.|.|..+.+++|+.|.+|++|+.|..++ |..++.-|. +.-..+. .|+.+-..-.......+.|
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~~~v~~~v~~---------~~~~~i~~~g~~v~v~~~~~~~~~~~g 71 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTDDLWVEAYVPE---------KDIARIKDPGQKVTVRLDPGPEKTIEG 71 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccceEEEEEEECh---------HhhcceEeCCCEEEEEECCCCCcEEEE
Confidence 4799999999999999999999999999998752 232222222 1222343 5554443333333347788
Q ss_pred ceeeee
Q 041518 729 FVVQFV 734 (765)
Q Consensus 729 ~~~~~~ 734 (765)
+|..|.
T Consensus 72 ~V~~I~ 77 (105)
T PF13437_consen 72 KVSSIS 77 (105)
T ss_pred EEEEEe
Confidence 777753
No 192
>PRK07051 hypothetical protein; Validated
Probab=96.03 E-value=0.0076 Score=51.82 Aligned_cols=32 Identities=41% Similarity=0.528 Sum_probs=30.0
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
..|+||.+|+|.++.+++||.|+.||+|+.++
T Consensus 48 ~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 48 TEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 35899999999999999999999999999986
No 193
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=95.94 E-value=0.035 Score=70.05 Aligned_cols=130 Identities=24% Similarity=0.391 Sum_probs=103.9
Q ss_pred CceEEEEE-CCEEEEEEEEEeecc-cce--EEEEEeCCeeEEEEEecCCCCCCccccccccccccCCCCCCcccCCCcce
Q 041518 584 EHKFRVEF-DVVSMDVHLAVYNKG-RIK--HIHAWHGLHHHHFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGL 659 (765)
Q Consensus 584 ~~~l~~~~-~G~~~~~~~~~~~~~-~~~--~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~ 659 (765)
+.++.+++ .|+.+.+.+...+.- ..+ .+....+|+.+.+.+.+..... ......+++...+..|.|||||+
T Consensus 1010 ~~e~~v~~~~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~-----~~~~~~KAd~~~~~~I~a~~~G~ 1084 (1143)
T TIGR01235 1010 GEEIEVDIEKGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKA-----EAAVRRKADPGNPAHVGAPMPGV 1084 (1143)
T ss_pred CcEEEEEecCCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccc-----ccccccccccccCceeecCCCcE
Confidence 45678888 599998887665421 122 3345578999998887765321 00112334566778899999999
Q ss_pred EEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 660 VVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 660 v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
|++|+|++||.|++||+|++||||||+++|.||.+|+|+++++++|+.|..|++|++|+
T Consensus 1085 v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1085 IIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 194
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.90 E-value=0.027 Score=61.61 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=54.4
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec----ceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM----KMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam----Km~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
.-|+||.+|.+. ..++.||.|++||+|+.|=.. ....+|+||.+|+|.... ..-.|..|+.|+.|
T Consensus 256 ~~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDGLIE-FMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCeEEE-EecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEEe
Confidence 469999999665 779999999999999999764 247899999999997654 55689999999876
No 195
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.84 E-value=0.095 Score=55.35 Aligned_cols=92 Identities=12% Similarity=0.250 Sum_probs=62.8
Q ss_pred EEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 39 KILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 39 kILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
+|||+|+ |+ +..+++.+.+.|+++++..............-...+..+. ++.+.+.+++++.++|+|+-..
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~-------l~~~~l~~~l~~~~i~~VIDAt 73 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGA-------LDPQELREFLKRHSIDILVDAT 73 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECC-------CCHHHHHHHHHhcCCCEEEEcC
Confidence 7999998 65 9999999999999987765544332222222112344444 7778889999999999988553
Q ss_pred -Cccccc-HHHHHHHHHCCCcEE
Q 041518 118 -GFLSES-ADFAQLCGDNGLTFI 138 (765)
Q Consensus 118 -g~lsE~-~~~a~~~~~~Gl~~~ 138 (765)
-|..+. ....++|.+.|++++
T Consensus 74 HPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 74 HPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred CHHHHHHHHHHHHHHHHhCCcEE
Confidence 222221 344688899999988
No 196
>PRK06748 hypothetical protein; Validated
Probab=95.80 E-value=0.034 Score=47.99 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=32.9
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe-Ccc
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA-VHI 722 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~-~~~ 722 (765)
-.|+||..|+|.++++++||.|..|++|++|+. +..
T Consensus 5 ~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~ 41 (83)
T PRK06748 5 EGVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQ 41 (83)
T ss_pred eEEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCc
Confidence 458999999999999999999999999999998 533
No 197
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=95.78 E-value=0.092 Score=55.17 Aligned_cols=93 Identities=14% Similarity=0.254 Sum_probs=65.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCC-CHHHHHHHHHHhCCCEEE
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYL-NGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syl-d~~~Il~~a~~~~~DaV~ 114 (765)
||.+|||+|+-.-+..+++.+.+.|+++++-....... .... ...+..+. + +.+.+.++++++++++|+
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~--~~~~-~~~v~~G~-------l~~~~~l~~~l~~~~i~~VI 70 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG--PADL-PGPVRVGG-------FGGAEGLAAYLREEGIDLVI 70 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC--cccC-CceEEECC-------CCCHHHHHHHHHHCCCCEEE
Confidence 57899999999999999999999999876543332222 1111 22344555 6 889999999999999998
Q ss_pred eCC-Cccccc-HHHHHHHHHCCCcEE
Q 041518 115 PGY-GFLSES-ADFAQLCGDNGLTFI 138 (765)
Q Consensus 115 pg~-g~lsE~-~~~a~~~~~~Gl~~~ 138 (765)
-.. -|..+- ....++|.+.|++++
T Consensus 71 DATHPfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 71 DATHPYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred ECCCccHHHHHHHHHHHHHHhCCcEE
Confidence 552 232222 344678888888887
No 198
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.72 E-value=0.0099 Score=56.85 Aligned_cols=33 Identities=33% Similarity=0.679 Sum_probs=31.0
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEe
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ea 682 (765)
..|.||..|+|.+++|++||.|+.||+|++|+.
T Consensus 108 neI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 108 NEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred ceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 569999999999999999999999999999873
No 199
>COG3608 Predicted deacylase [General function prediction only]
Probab=95.63 E-value=0.031 Score=60.33 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=55.1
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEEec---ceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM---KMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam---Km~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
..-++||-.| +++..|+.||.|++||.|+.+-.+ +.+.+|+|+.+|+|.... .--+|+.|+.+..+..
T Consensus 256 ~~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v~~ 326 (331)
T COG3608 256 DEMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVVGR 326 (331)
T ss_pred cceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeeecc
Confidence 3459999999 557889999999999999999987 778999999999997664 2336777777766543
No 200
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.58 E-value=0.12 Score=61.12 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=30.9
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
...|+||.+|+|.++.+++||.|..||+|++||
T Consensus 559 e~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 559 ENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred ceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 357999999999999999999999999999986
No 201
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.55 E-value=0.04 Score=61.15 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=52.8
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEEe----cceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEA----MKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ea----mKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
...|+||-.|.+ ...++.||.|++||.|+.|-. ..-+.+|+||.+|+|..+ ...-.|..|+.|+.|
T Consensus 289 ~~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCeEE-EEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCccccCCCeEEEe
Confidence 346899999965 577999999999999999954 223344799999999754 467789999999876
No 202
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.30 E-value=0.08 Score=48.91 Aligned_cols=98 Identities=26% Similarity=0.352 Sum_probs=59.8
Q ss_pred CEEEEEcC----cHHHHHHHHHHHHCCCeEEEEecCCCCC---Ccccccc------cEEEEcCCCCcCcCCCCHHHHHHH
Q 041518 38 EKILIANR----GEIAYRIMRTAKRLGIRTVAVYSDADRD---SLHVKSA------DEAIRIGPPPARLSYLNGSSIVDA 104 (765)
Q Consensus 38 kkILI~g~----G~~a~~iiraar~~Gi~vvav~s~~d~~---~~~~~~a------D~~~~i~~~~~~~syld~~~Il~~ 104 (765)
|+|.|+|. +..+.++++.+++.|++++.|+...+.- ..+..+. |-++..-+ -.....+++-
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~------~~~~~~~v~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVP------PDKVPEIVDE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-------HHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcC------HHHHHHHHHH
Confidence 68999994 4568999999999999999997654321 1122222 22222111 0233456666
Q ss_pred HHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEECCcHH
Q 041518 105 AIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVS 143 (765)
Q Consensus 105 a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~e 143 (765)
+.+.++..++...| .++..+.+.+++.|++++||+--
T Consensus 75 ~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 75 AAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp HHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-H
T ss_pred HHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcc
Confidence 67789998887766 45688899999999999988643
No 203
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.28 E-value=0.039 Score=59.43 Aligned_cols=65 Identities=26% Similarity=0.257 Sum_probs=50.1
Q ss_pred CCCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEec--ceEEEEEcCCCeEEEEEEcCCCCccCCCCeE
Q 041518 647 GPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM--KMEHVVKAPTTGVVHGLQVTAGQQVSDGSVL 714 (765)
Q Consensus 647 ~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam--Km~~~i~ap~~G~v~~~~~~~G~~v~~g~~l 714 (765)
.....++||.+|.+ ...++.||.|++||+|+.+=.. ....+|+||.+|+|.-+. ..-.|.+|+.|
T Consensus 221 ~~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 221 DDVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred cCCEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 34567899999955 5679999999999999999432 446789999999997664 33456677665
No 204
>PF13437 HlyD_3: HlyD family secretion protein
Probab=95.11 E-value=0.038 Score=49.71 Aligned_cols=42 Identities=33% Similarity=0.502 Sum_probs=35.0
Q ss_pred EEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcceeeeecce
Q 041518 688 VVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQLAVHGFV 730 (765)
Q Consensus 688 ~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~~~~~~~~~ 730 (765)
+|+||.+|+|..+.+++|+.|..|++|+.|.+. ....++..+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~-~~~~v~~~v 42 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT-DDLWVEAYV 42 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc-ceEEEEEEE
Confidence 489999999999999999999999999999886 334444433
No 205
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=95.07 E-value=0.055 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 695 GVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 695 G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
|.=-++++++||.|..|++|+++..
T Consensus 79 g~gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 79 GEGFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcH
Confidence 3334556889999999999998874
No 206
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.03 E-value=0.045 Score=44.52 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=30.7
Q ss_pred EEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 689 VKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 689 i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
|+||.+|+|.++.+++|+.|++|++|+.++...
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~ 34 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMK 34 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEccc
Confidence 789999999999999999999999999998654
No 207
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.02 E-value=0.069 Score=59.38 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=80.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCC-CeEEEEecCCCCCCcccccc---cEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLG-IRTVAVYSDADRDSLHVKSA---DEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~G-i~vvav~s~~d~~~~~~~~a---D~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
|++|||+|.|.++..+++.|.+.| .++.+.+.+.+......... -++..++ -.|.+++.+++++. |+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD-------~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD-------AADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec-------ccChHHHHHHHhcC--CE
Confidence 579999999999999999999988 88777665433322221111 1233333 37888999999776 88
Q ss_pred EEeCC-CcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCcc
Q 041518 113 IHPGY-GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGY 169 (765)
Q Consensus 113 V~pg~-g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~ 169 (765)
|+..- .++. ..+.++|.+.|+.++=-+ ..-.+.+..+..++++|+-..+..
T Consensus 72 VIn~~p~~~~--~~i~ka~i~~gv~yvDts----~~~~~~~~~~~~a~~Agit~v~~~ 123 (389)
T COG1748 72 VINAAPPFVD--LTILKACIKTGVDYVDTS----YYEEPPWKLDEEAKKAGITAVLGC 123 (389)
T ss_pred EEEeCCchhh--HHHHHHHHHhCCCEEEcc----cCCchhhhhhHHHHHcCeEEEccc
Confidence 88553 3332 577899999999988211 111124778888999998776654
No 208
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=95.00 E-value=0.23 Score=52.30 Aligned_cols=93 Identities=16% Similarity=0.297 Sum_probs=61.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeEEE-EecCCCCCCcccccccEEEEcCCCCcCcCCC-CHHHHHHHHHHhCCCEEEe
Q 041518 38 EKILIANRGEIAYRIMRTAKRLGIRTVA-VYSDADRDSLHVKSADEAIRIGPPPARLSYL-NGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~~Gi~vva-v~s~~d~~~~~~~~aD~~~~i~~~~~~~syl-d~~~Il~~a~~~~~DaV~p 115 (765)
+||||+|+-.-+..+++.+.+.|+ +++ +.++..............+.++. + +.+.+.++++++++++|+-
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~-------lg~~~~l~~~l~~~~i~~vID 72 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGR-------LGDEEGLAEFLRENGIDAVID 72 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECC-------CCCHHHHHHHHHhCCCcEEEE
Confidence 489999999999999999999998 332 22221111111111112344555 5 8999999999999999985
Q ss_pred CC-Cccccc-HHHHHHHHHCCCcEE
Q 041518 116 GY-GFLSES-ADFAQLCGDNGLTFI 138 (765)
Q Consensus 116 g~-g~lsE~-~~~a~~~~~~Gl~~~ 138 (765)
.. -|..+- ....++|.+.|++++
T Consensus 73 ATHPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 73 ATHPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred CCCchHHHHHHHHHHHHhhcCcceE
Confidence 52 222221 345688899999887
No 209
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=94.80 E-value=0.3 Score=50.73 Aligned_cols=93 Identities=10% Similarity=0.137 Sum_probs=61.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCC-CCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADR-DSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~-~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
+.+|||+|+-.-++.+++.+...+.. +.+.+-.+. ..+....+- .... -+++.+.+.++.+++++|.++-
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~~~-~~~ss~t~~g~~l~~~~~~-~~~~-------G~l~~e~l~~~l~e~~i~llID 72 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAPVD-IILSSLTGYGAKLAEQIGP-VRVG-------GFLGAEGLAAFLREEGIDLLID 72 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccCcc-EEEEEcccccccchhccCC-eeec-------CcCCHHHHHHHHHHcCCCEEEE
Confidence 57999999999999999999999833 333333222 222222322 2222 3589999999999999999885
Q ss_pred CC-Cccccc-HHHHHHHHHCCCcEE
Q 041518 116 GY-GFLSES-ADFAQLCGDNGLTFI 138 (765)
Q Consensus 116 g~-g~lsE~-~~~a~~~~~~Gl~~~ 138 (765)
.. -|..+- ....++|+..|++++
T Consensus 73 ATHPyAa~iS~Na~~aake~gipy~ 97 (257)
T COG2099 73 ATHPYAARISQNAARAAKETGIPYL 97 (257)
T ss_pred CCChHHHHHHHHHHHHHHHhCCcEE
Confidence 42 121111 234678888999887
No 210
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=94.72 E-value=0.059 Score=53.03 Aligned_cols=66 Identities=20% Similarity=0.370 Sum_probs=47.9
Q ss_pred CcccCCCcceEEEEEcCCCCeecC----CCeEEEEEecceEEEEEcCCCeEEEEE-------------------------
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEE----GQPILVLEAMKMEHVVKAPTTGVVHGL------------------------- 700 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~----G~~l~~~eamKm~~~i~ap~~G~v~~~------------------------- 700 (765)
..|.||+.|+++.+ -++-|.|-+ |+-+++.=+ +..|.||++|+|..+
T Consensus 21 ~~i~aP~~G~vi~L-~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDT 96 (169)
T PRK09439 21 IEIIAPLSGEIVNI-EDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDT 96 (169)
T ss_pred eEEEecCCeEEEEh-HHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecc
Confidence 35778888888766 455565555 777776543 366778888877765
Q ss_pred ----------EcCCCCccCCCCeEEEEEe
Q 041518 701 ----------QVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 701 ----------~~~~G~~v~~g~~l~~i~~ 719 (765)
++++||.|..|++|+++..
T Consensus 97 V~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 97 VELKGEGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred cccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence 4678999999999999874
No 211
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=94.67 E-value=0.081 Score=49.13 Aligned_cols=63 Identities=25% Similarity=0.491 Sum_probs=35.8
Q ss_pred CCcccCCCcceEEEEEcCCCCe-e--cCCCeEE-EE--EecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 649 PGSVLSPMAGLVVKVLANDGTK-V--EEGQPIL-VL--EAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~-V--~~G~~l~-~~--eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
.+.|.||..|+|..+.-..-.. + ..|-.++ -+ ++-+| .|.=-+.++++||.|.+|++|+++..
T Consensus 35 ~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGidTV~L--------~G~gF~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 35 DGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGIDTVKL--------NGEGFTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred CCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeceeec--------CCCceEEEecCCCEEcCCCEEEEEcH
Confidence 4678888888887664321111 1 1122222 11 12222 23334567889999999999999874
No 212
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=94.30 E-value=0.1 Score=44.11 Aligned_cols=46 Identities=26% Similarity=0.492 Sum_probs=36.3
Q ss_pred EEEEcCCCeEEEE------EEcCCCCccCCCCeEEEEEeCcceeee----ecceee
Q 041518 687 HVVKAPTTGVVHG------LQVTAGQQVSDGSVLFRLQAVHIQLAV----HGFVVQ 732 (765)
Q Consensus 687 ~~i~ap~~G~v~~------~~~~~G~~v~~g~~l~~i~~~~~~~~~----~~~~~~ 732 (765)
++|++|..|...+ +++++||.|..|++|+.|+.......+ .|.+.+
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~ 56 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKE 56 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEE
Confidence 4788999887666 999999999999999999987554444 444444
No 213
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=94.19 E-value=0.062 Score=56.06 Aligned_cols=50 Identities=22% Similarity=0.439 Sum_probs=40.7
Q ss_pred ccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEc
Q 041518 652 VLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQV 702 (765)
Q Consensus 652 v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~ 702 (765)
+-..++|..-++.|++||+|++||+|+.=.... ..-..||.+|+|++|+-
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK~~p-~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFEDKKNP-GVKFTSPVSGTVKAINR 81 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEeeCCCC-CcEEecCCCeEEEEEec
Confidence 344678888899999999999999999843322 46689999999999864
No 214
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.09 E-value=0.12 Score=48.65 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=38.2
Q ss_pred EEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcceeee----ecceee
Q 041518 686 EHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQLAV----HGFVVQ 732 (765)
Q Consensus 686 ~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~~~~~----~~~~~~ 732 (765)
...|+||.+|+|.++++++||.|..|++|+.++.......+ .|++..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~ 111 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTA 111 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEE
Confidence 45689999999999999999999999999999976433333 556554
No 215
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=94.02 E-value=0.95 Score=42.70 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=71.5
Q ss_pred CcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEeccccEEEEEeeecccc
Q 041518 188 YPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQ 267 (765)
Q Consensus 188 ~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~ 267 (765)
-|+.|||....-.---.++.+.++|... .....+..+++.+.++-..|+.+-++ +|+++.... .
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~--------~~~~~~~~V~vSe~v~~~~E~R~fi~---~g~vv~~s~-----Y 65 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGF--------GSLDPDTPVLVSEVVEIESEWRCFIV---DGEVVTGSP-----Y 65 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhcccc--------CCCCCCceEEEeceEeeeeeEEEEEE---CCEEEEEee-----c
Confidence 3899999986654444566666655421 11123578999999996677777666 356666532 1
Q ss_pred ccceeeeeecCCCCCCHHHHHHHHHHHHHHHHHc-CCCceeEEEEEEECCCCcEEEEEecccCC
Q 041518 268 RRHQKIIEEAPAPNVTHDFRALLGQAAVSAAKAV-SYHNAGTVEFIVDTVSDQFYFMEMNTRLQ 330 (765)
Q Consensus 268 ~~~~k~~e~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEf~~~~~~g~~~~iEiN~R~~ 330 (765)
+.. +....+. ++.+.+.+.+++. ..--...+|+=++. +|+.++||+|.=-+
T Consensus 66 ~~~-------~~~~~~~----~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 66 RGD-------WDLEPDP----DVVAFAIQALAAAWTLPPAYVLDVGVTD-DGGWALVEANDGWS 117 (130)
T ss_pred CCC-------cccCCCH----HHHHHHHHHHHhcccCCCeEEEEEEEeC-CCCEEEEEecCccc
Confidence 111 1112233 3444444444433 33367889999997 88999999998654
No 216
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.79 E-value=0.038 Score=59.45 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=15.1
Q ss_pred ccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 652 VLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 652 v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
|.++..|+|.+++|++||.|++||+|+.|+
T Consensus 4 Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD 33 (305)
T PF00529_consen 4 VQSLVGGIVTEILVKEGQRVKKGQVLARLD 33 (305)
T ss_dssp E--SS-EEEEEE-S-TTEEE-TTSECEEE-
T ss_pred EeCCCCeEEEEEEccCcCEEeCCCEEEEEE
Confidence 556666666666666666666666666665
No 217
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=93.56 E-value=0.14 Score=49.33 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 695 GVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 695 G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
|.-=+.++++||.|+.||+|+++.-
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECH
Confidence 4344457889999999999999863
No 218
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=93.49 E-value=0.09 Score=49.64 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=12.4
Q ss_pred EcCCCCccCCCCeEEEEEe
Q 041518 701 QVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 701 ~~~~G~~v~~g~~l~~i~~ 719 (765)
++++||.|..|++|+++..
T Consensus 89 ~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 89 LVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp SS-TTSEE-TTEEEEEE-H
T ss_pred EEeCCCEEECCCEEEEEcH
Confidence 4557888888888888764
No 219
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.44 E-value=0.22 Score=54.53 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=51.0
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEEec-ceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC-cceeee
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM-KMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV-HIQLAV 726 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam-Km~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~-~~~~~~ 726 (765)
...|+||++|+|..+.+++|+.|..|++|+.|... +|...+.-|. ..-..|..|+.+-.--+. .....+
T Consensus 204 ~~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~~~v~~~v~e---------~~~~~i~~G~~v~v~~~~~~~~~~~ 274 (334)
T TIGR00998 204 RTVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQMYVEANFKE---------TQLKNVRIGQPVTIRSDLYGSDVVF 274 (334)
T ss_pred CcEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCcEEEEEecCH---------HHHhhCCCCCEEEEEEecCCCCCEE
Confidence 46799999999999999999999999999998654 3333332221 112245556554432222 223467
Q ss_pred ecceeeeec
Q 041518 727 HGFVVQFVQ 735 (765)
Q Consensus 727 ~~~~~~~~~ 735 (765)
.|+|..|..
T Consensus 275 ~G~V~~Is~ 283 (334)
T TIGR00998 275 EGKVTGISM 283 (334)
T ss_pred EEEEEEECC
Confidence 888777644
No 220
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=92.96 E-value=0.44 Score=56.12 Aligned_cols=45 Identities=20% Similarity=0.503 Sum_probs=36.9
Q ss_pred EEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcceeee----ecceee
Q 041518 688 VVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQLAV----HGFVVQ 732 (765)
Q Consensus 688 ~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~~~~~----~~~~~~ 732 (765)
+|.||.+|+|.++++++||.|+.|++|++++.......+ .|.|..
T Consensus 527 ~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~ 575 (596)
T PRK14042 527 DITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAE 575 (596)
T ss_pred eEecCcceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEE
Confidence 599999999999999999999999999999976433333 555554
No 221
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=92.94 E-value=0.15 Score=48.88 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=38.7
Q ss_pred ccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEE-EEEcCCCeEEEEEE
Q 041518 652 VLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEH-VVKAPTTGVVHGLQ 701 (765)
Q Consensus 652 v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~-~i~ap~~G~v~~~~ 701 (765)
..=|..|..+-+.+.+|++|.+||.|+.+.+-|-|. .++||.+|+|.-+.
T Consensus 83 ~l~~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 83 CLVPVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EEEEEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred EEEEecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 445788899999999999999999999999999874 59999999998765
No 222
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.93 E-value=0.16 Score=56.03 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEEec
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM 683 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam 683 (765)
...|+||..|+|.++.+++|+.|..|++|+.|-.+
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~ 242 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDT 242 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEecC
Confidence 46799999999999999999999999999998654
No 223
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.80 E-value=0.11 Score=50.68 Aligned_cols=32 Identities=34% Similarity=0.676 Sum_probs=30.1
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
..|+||..|+|++++++.|+.|..||+|+.|+
T Consensus 124 ~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 124 NEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred eEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 46999999999999999999999999999885
No 224
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=92.78 E-value=0.11 Score=50.61 Aligned_cols=32 Identities=41% Similarity=0.739 Sum_probs=30.2
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
..|.||..|+|.+++|+.||.|+.||+|+.|+
T Consensus 125 ~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 125 NEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred eEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 56999999999999999999999999999885
No 225
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=92.64 E-value=0.13 Score=58.37 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=40.0
Q ss_pred CCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEE
Q 041518 654 SPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQ 701 (765)
Q Consensus 654 ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~ 701 (765)
++..|.--+..|++||+|++||+|+.-+.. +...+.||.+|+|++|.
T Consensus 34 ~q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 34 RDFVGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAIN 80 (447)
T ss_pred hhcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEe
Confidence 344566668999999999999999987755 57899999999999995
No 226
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=92.33 E-value=0.24 Score=56.48 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=37.8
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEE
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQ 701 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~ 701 (765)
..|.--+..|++||+|++||.|+.-+.. +...+.||.+|+|++|.
T Consensus 37 h~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 37 YVGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred cCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 3455558899999999999999976654 47899999999999994
No 227
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=92.12 E-value=0.52 Score=46.46 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=24.3
Q ss_pred CCCcceEEEEEcCCCCeecCCCeEEEEEe
Q 041518 654 SPMAGLVVKVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 654 ap~~G~v~~~~v~~Gd~V~~G~~l~~~ea 682 (765)
--+.|.=-+++|++||+|++||+|+.+.-
T Consensus 97 V~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 97 VELKGEGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred cccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence 44666666889999999999999999873
No 228
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=91.96 E-value=0.49 Score=45.68 Aligned_cols=21 Identities=33% Similarity=0.726 Sum_probs=18.9
Q ss_pred EEEcCCCCeecCCCeEEEEEe
Q 041518 662 KVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 662 ~~~v~~Gd~V~~G~~l~~~ea 682 (765)
+.+|++||+|++||+|+.+.-
T Consensus 90 ~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 90 ESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred EEEeeCCCEEccCCEEEEECH
Confidence 668999999999999999874
No 229
>PRK04148 hypothetical protein; Provisional
Probab=91.89 E-value=0.47 Score=44.92 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=50.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------CcccccccEEEEcCCCCcCcCCCCH
Q 041518 38 EKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRD-------------------SLHVKSADEAIRIGPPPARLSYLNG 98 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~-------------------~~~~~~aD~~~~i~~~~~~~syld~ 98 (765)
+|+|++|-| .+..+++.+.++|++|++++.++.+- -...+-||-.|.+-|.+ .=.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~-----el~ 91 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR-----DLQ 91 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH-----HHH
Confidence 589999999 66678888999999999998766521 11122344444444322 224
Q ss_pred HHHHHHHHHhCCCEEEeC
Q 041518 99 SSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 99 ~~Il~~a~~~~~DaV~pg 116 (765)
..|++++++.++|.++-.
T Consensus 92 ~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 92 PFILELAKKINVPLIIKP 109 (134)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 578999999999998854
No 230
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=91.84 E-value=0.17 Score=42.29 Aligned_cols=31 Identities=42% Similarity=0.678 Sum_probs=28.7
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVL 680 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ 680 (765)
..|.||.+|+|++++++.|+.|..|+.|+.+
T Consensus 43 ~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 43 SDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 4589999999999999999999999999864
No 231
>PRK05849 hypothetical protein; Provisional
Probab=91.71 E-value=8.8 Score=46.90 Aligned_cols=177 Identities=11% Similarity=0.099 Sum_probs=104.4
Q ss_pred HhcCHHHHHHHHHH--CCCCCCCccccCC----CCHHHHHHHHHHh--CCcEEEeecCCC------CCccEE--E--ECC
Q 041518 147 DMGDKSASKRIMGA--AGVPLVPGYHGNE----QDIDLMKSEAAKI--GYPILIKPTHGG------GGKGMR--I--VQS 208 (765)
Q Consensus 147 ~~~DK~~~r~~l~~--~Gvpvp~~~~~~~----~s~~e~~~~~~~i--g~PvVVKP~~g~------Gg~Gv~--~--v~s 208 (765)
.++.|...-..|+. .|.++||.+.... ++.+.+.+.+... +-|++|+.+.-+ +.-|.+ + |..
T Consensus 7 ~~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~ 86 (783)
T PRK05849 7 FFQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNA 86 (783)
T ss_pred ccchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCC
Confidence 46778888888888 8999999876553 2444454444432 469999977532 233432 2 333
Q ss_pred h--hHHHHHHHHHHHHHHhcCCCCcEEEecccCCCeeEEEEEEEe-ccccEEEEEeeeccccc--------c-ceeeeee
Q 041518 209 P--NDFVDSFLGAQREAAASFGINTILLEKYITQPRHIEVQIFGD-KYGKVLHLYERDCSVQR--------R-HQKIIEE 276 (765)
Q Consensus 209 ~--~el~~a~~~~~~ea~~~fg~~~vlVEeyI~ggrei~v~v~~d-~~g~vv~l~~r~~s~~~--------~-~~k~~e~ 276 (765)
. ++|..+++.+...-. ...+..++||++|.+..--.|-.-.| ..|.-..+++..+.-+. . .+..+..
T Consensus 87 ~~~~~L~~AI~~V~aS~~-~~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~t~~~~~~~~ 165 (783)
T PRK05849 87 DSKDQLLKAIEKVIASYG-TSKDDEILVQPMLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSGGSATTVYHY 165 (783)
T ss_pred CcHHHHHHHHHHHHHhhC-CCCCCeEEEEeCccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccCCCCceeeec
Confidence 3 388898888775311 12456799999997321111111122 11111111222111000 0 1111111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEec
Q 041518 277 APAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMN 326 (765)
Q Consensus 277 ~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN 326 (765)
...+.++++...+|.+.+.++-+.+|. .+..|||-+|+ +|++|++-+-
T Consensus 166 ~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDIEfaid~-~g~L~lLQ~R 213 (783)
T PRK05849 166 RDALVFKPPRLKKLIELIRELEALFGC-DFLDIEFAIDE-KEELYILQVR 213 (783)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCC-CCeeeEEEEcc-CCEEEEEEcc
Confidence 112357788889999999999888875 48899999976 8999999854
No 232
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=91.69 E-value=0.33 Score=55.11 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=49.3
Q ss_pred EEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 660 VVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 660 v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
|.-..|+.|+.-..=..+..+++. -+..|.++.+|+|.++++++||.|.+|++|++|++.+
T Consensus 62 V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 62 VQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred eEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence 444555666655555567788884 4688999999999999999999999999999998764
No 233
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.67 E-value=0.46 Score=51.28 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=41.0
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEEec--ceEEEEEcCCCeEEEEE
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM--KMEHVVKAPTTGVVHGL 700 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam--Km~~~i~ap~~G~v~~~ 700 (765)
...|+||-+|.+ ...++.||.|++||.|++|-.. .-..+++||.+|+|...
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 456899999955 5779999999999999999643 12456899999998765
No 234
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=91.47 E-value=0.37 Score=52.83 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=32.0
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEEec
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM 683 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam 683 (765)
...|+||++|.|..+.+++|+.|..|++|+.|-.+
T Consensus 203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 46899999999999999999999999999988644
No 235
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.82 Score=51.62 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=47.4
Q ss_pred CCCCCCccccCCCCHHHHHHHHHHhC-CcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCC
Q 041518 162 GVPLVPGYHGNEQDIDLMKSEAAKIG-YPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQ 240 (765)
Q Consensus 162 Gvpvp~~~~~~~~s~~e~~~~~~~ig-~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~g 240 (765)
.++.-|......++.+++++.+++.. -=+||||...+-|.||++++...++.. +.+++||+||+.
T Consensus 279 ef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yieR 344 (662)
T KOG2156|consen 279 EFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIER 344 (662)
T ss_pred ccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhhc
Confidence 34443433333468888888876632 228899999999999999999877543 467888888875
Q ss_pred C
Q 041518 241 P 241 (765)
Q Consensus 241 g 241 (765)
+
T Consensus 345 P 345 (662)
T KOG2156|consen 345 P 345 (662)
T ss_pred c
Confidence 4
No 236
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=91.22 E-value=0.15 Score=54.82 Aligned_cols=35 Identities=34% Similarity=0.572 Sum_probs=24.9
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..|.++.+|+|.+|+|++||.|++|++|++|++..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 36889999999999999999999999999999764
No 237
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.02 E-value=2 Score=46.56 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=44.5
Q ss_pred EEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 39 KILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 39 kILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
||||+| .|.++..+++.+.+.|++++++..+..........--+.+. -++.|.+.+.+++ .++|+|+-.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~-------~Dl~d~~~l~~al--~g~d~Vi~~ 71 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVY-------GDLSLPETLPPSF--KGVTAIIDA 71 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEE-------CCCCCHHHHHHHH--CCCCEEEEC
Confidence 899999 58999999999999999988886543221100000111221 2456667776666 368988754
No 238
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.98 E-value=1.1 Score=48.93 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=89.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc-ccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKS-ADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~-aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
+=++|+|.|.|..+...++-|+.+|.+|++++.+.+......++ ||..+.- .| +...+.+++. +|+|+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~---------~~-~~~~~~~~~~-~d~ii 234 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINS---------SD-SDALEAVKEI-ADAII 234 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEc---------CC-chhhHHhHhh-CcEEE
Confidence 45799999999999999999999999999999887776666777 7776642 12 2223333333 89999
Q ss_pred eCCCcccccHHHHHHHHHCC-CcEECCcH-HHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEE
Q 041518 115 PGYGFLSESADFAQLCGDNG-LTFIGPPV-SAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILI 192 (765)
Q Consensus 115 pg~g~lsE~~~~a~~~~~~G-l~~~Gp~~-eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVV 192 (765)
-..+ -..-....+.+...| +..+|.+. .... .-..+.-++. ++.+.-.......+.+++.+++.+.+.
T Consensus 235 ~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~---~~~~~~li~~--~~~i~GS~~g~~~d~~e~l~f~~~g~I---- 304 (339)
T COG1064 235 DTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIP---LLPAFLLILK--EISIVGSLVGTRADLEEALDFAAEGKI---- 304 (339)
T ss_pred ECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccC---CCCHHHhhhc--CeEEEEEecCCHHHHHHHHHHHHhCCc----
Confidence 6654 111123345555555 44555543 1110 0011111222 222222222223355666666666542
Q ss_pred eecCCCCCccEEEECChhHHHHHHHHHHH
Q 041518 193 KPTHGGGGKGMRIVQSPNDFVDSFLGAQR 221 (765)
Q Consensus 193 KP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ 221 (765)
||.-. .....+|+.++|+++.+
T Consensus 305 kp~i~-------e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 305 KPEIL-------ETIPLDEINEAYERMEK 326 (339)
T ss_pred eeeEE-------eeECHHHHHHHHHHHHc
Confidence 22111 24567788888887763
No 239
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=90.79 E-value=1.6 Score=54.85 Aligned_cols=111 Identities=11% Similarity=0.152 Sum_probs=70.9
Q ss_pred EEEEECCEEEEEEEEEeecccceEEEEEeCCeeEEEEEecCCCCCCccccccccccccCCCCCCcccCCCcceEEEEEcC
Q 041518 587 FRVEFDVVSMDVHLAVYNKGRIKHIHAWHGLHHHHFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLVVKVLAN 666 (765)
Q Consensus 587 l~~~~~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~ 666 (765)
+.+.++|.+|...+.+.+ ++++++..+|...++.+..-.. +.+.=...|+...++-+
T Consensus 606 vdli~e~~kY~lkV~rss---~~~y~l~mngs~~~v~v~~L~d--------------------ggLli~~~Gks~t~y~k 662 (2196)
T KOG0368|consen 606 VDLIYEGNKYTLKVVRSS---SGTYVLRMNGSEVTVGVHQLSD--------------------GGLLISLDGKSYTIYWK 662 (2196)
T ss_pred eEEEecCcEEEEEEEecC---CceEEEEEcCcEEEEEEEEecC--------------------CcEEEEECCceEEEEEe
Confidence 344556666666665544 3556666666555554332111 11222334444444433
Q ss_pred C---CCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 667 D---GTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 667 ~---Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
+ |-++.-|---+.+|...=-..+++|..|++.+.+|+.|+.|.+|++-++|+--
T Consensus 663 eev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEvM 719 (2196)
T KOG0368|consen 663 EEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVM 719 (2196)
T ss_pred eccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehehh
Confidence 2 44455577777788766667799999999999999999999999999998843
No 240
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=90.73 E-value=0.45 Score=54.31 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEE
Q 041518 658 GLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQ 701 (765)
Q Consensus 658 G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~ 701 (765)
|.--+..|++||+|++||.|+.-+. .....+.||.+|+|++|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEec
Confidence 3344789999999999999999843 357899999999999874
No 241
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=90.70 E-value=0.52 Score=52.55 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=44.9
Q ss_pred eEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 659 LVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 659 ~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
.+.-+.|+.|+.-..=..-..+++-+ +..|.|+.+|.|.++.+++||.|.+|++|+.|++.+
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~ 96 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQ 96 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECcHH
Confidence 44444555555433222344555544 468999999999999999999999999999998653
No 242
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=90.59 E-value=0.52 Score=52.91 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=48.4
Q ss_pred EEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcc
Q 041518 660 VVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHI 722 (765)
Q Consensus 660 v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~ 722 (765)
|.-..|+.++.-..-.....+++. .+..|.++.+|+|.++++++||.|++|++|+.|++.+-
T Consensus 38 V~v~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~ 99 (385)
T PRK09578 38 ATVVTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPL 99 (385)
T ss_pred eEEEEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHH
Confidence 333455666644444566777775 46799999999999999999999999999999987643
No 243
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=90.57 E-value=0.51 Score=52.95 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=50.2
Q ss_pred EEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 660 VVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 660 v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
|.-..|+.|+....-+....+++-+ +..|.++.+|+|.++.+++||.|++|++|++|++.+
T Consensus 36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~ 96 (385)
T PRK09859 36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAP 96 (385)
T ss_pred eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHH
Confidence 4444567776666666778887765 678999999999999999999999999999998764
No 244
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=90.56 E-value=0.26 Score=51.39 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=30.2
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
..|.||..|+|.++++++||.|..||+|++||
T Consensus 242 ieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 242 NEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 46899999999999999999999999999986
No 245
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=90.40 E-value=0.39 Score=51.70 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=42.0
Q ss_pred CCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 655 PMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 655 p~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
|+.|.=-.+.|++||.|++||+|++-.-. --.-++||.+|+|++|+ -|+.=.--++++.++..
T Consensus 35 ey~gmrp~mkV~~gD~VkkGq~LfEdKkn-pgv~~Tap~sG~V~aI~--RG~KRvLqsVVI~~~g~ 97 (447)
T COG1726 35 EYVGMRPSMKVREGDAVKKGQVLFEDKKN-PGVVFTAPVSGKVTAIH--RGEKRVLQSVVIKVEGD 97 (447)
T ss_pred cccCCCCcceeccCCeeeccceeeecccC-CCeEEeccCCceEEEee--cccceeeeeEEEEecCC
Confidence 34444445789999999999999974322 13568999999999986 34332222455555543
No 246
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=90.34 E-value=0.24 Score=56.99 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=29.5
Q ss_pred cccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 651 SVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
.|.++..|.|.+++|++||.|++||+|+.|+
T Consensus 61 ~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld 91 (457)
T TIGR01000 61 KIQSTSNNAIKENYLKENKFVKKGDLLVVYD 91 (457)
T ss_pred EEEcCCCcEEEEEEcCCCCEecCCCEEEEEC
Confidence 5889999999999999999999999999997
No 247
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=90.07 E-value=1.1 Score=48.52 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhC-CcEEEeecCCCCCc-----------cEEEECChhHHHHHHH
Q 041518 150 DKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIG-YPILIKPTHGGGGK-----------GMRIVQSPNDFVDSFL 217 (765)
Q Consensus 150 DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig-~PvVVKP~~g~Gg~-----------Gv~~v~s~~el~~a~~ 217 (765)
.-+...+++++.|+.+|+++... |++|+.+.++++| --+|||+-.-.||| ||++|.+++|.++.-.
T Consensus 26 hey~~~~ll~~~Gv~vp~g~vA~--speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va~ 103 (434)
T KOG2799|consen 26 HEYRSAALLRKYGINVPLGYVAK--SPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVAS 103 (434)
T ss_pred HHHHHHHHHHHcCCCCCCCcccC--CHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHHH
Confidence 34555789999999999998766 9999999999998 35999997655544 5899999999887666
Q ss_pred HHH
Q 041518 218 GAQ 220 (765)
Q Consensus 218 ~~~ 220 (765)
+..
T Consensus 104 qmi 106 (434)
T KOG2799|consen 104 QMI 106 (434)
T ss_pred Hhh
Confidence 554
No 248
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=89.98 E-value=0.4 Score=52.41 Aligned_cols=42 Identities=31% Similarity=0.395 Sum_probs=35.2
Q ss_pred EEecceEEEEEcCCC---eEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 680 LEAMKMEHVVKAPTT---GVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 680 ~eamKm~~~i~ap~~---G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
|+...-...|.++.+ |+|.+++|++||.|.+|++|++|++..
T Consensus 7 v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 7 LEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred EeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence 344333456889999 999999999999999999999998764
No 249
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.97 E-value=0.96 Score=46.60 Aligned_cols=117 Identities=18% Similarity=0.278 Sum_probs=77.7
Q ss_pred EEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCC-cccc-cccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 40 ILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDS-LHVK-SADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 40 ILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~-~~~~-~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
|||+| .|.++..+++++.+.|+++.++..+.+... ...+ .-.+.+. -+|.|.+.|.++.+ ++|+|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~-------~d~~~~~~l~~al~--g~d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVE-------ADYDDPESLVAALK--GVDAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEE-------S-TT-HHHHHHHHT--TCSEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEee-------cccCCHHHHHHHHc--CCceEEee
Confidence 78999 599999999999999999998876652211 1111 1122332 35788899988884 89998876
Q ss_pred CCccccc-----HHHHHHHHHCCCcEEC-----CcH-------HHHHHhcCHHHHHHHHHHCCCCC
Q 041518 117 YGFLSES-----ADFAQLCGDNGLTFIG-----PPV-------SAIRDMGDKSASKRIMGAAGVPL 165 (765)
Q Consensus 117 ~g~lsE~-----~~~a~~~~~~Gl~~~G-----p~~-------eai~~~~DK~~~r~~l~~~Gvpv 165 (765)
.+...+. ..+.+++.+.|+..+- ... -....+..|....+.+++.|++.
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~ 137 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPY 137 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEB
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccc
Confidence 5533121 3567888888876542 111 14556778899999999998775
No 250
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.90 E-value=0.95 Score=46.88 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=55.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc--cccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 38 EKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVK--SADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~--~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
++++|+|.|..+..+++.+.+.|+.+++++.+.+....... +.-..+..+. .+. .++.-+--.++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~-------t~~-~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDA-------TDE-DVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecC-------CCH-HHHHhcCCCcCCEEEE
Confidence 48999999999999999999999999999877655333222 3333443322 333 3333333456788886
Q ss_pred CCCcccccHHHHHHH-HHCCCc
Q 041518 116 GYGFLSESADFAQLC-GDNGLT 136 (765)
Q Consensus 116 g~g~lsE~~~~a~~~-~~~Gl~ 136 (765)
..+-.-.|..++.+. ...|.+
T Consensus 73 ~t~~d~~N~i~~~la~~~~gv~ 94 (225)
T COG0569 73 ATGNDEVNSVLALLALKEFGVP 94 (225)
T ss_pred eeCCCHHHHHHHHHHHHhcCCC
Confidence 655433333333333 224544
No 251
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=89.82 E-value=0.89 Score=48.81 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=54.3
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeE--EEEEecc--eEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPI--LVLEAMK--MEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l--~~~eamK--m~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
...+.||..|.+ ...++.||.|++||+| ..+-..- -..+++||.+|+|. .....-.|..|+.|+.+..
T Consensus 220 ~~~~~a~~~G~~-~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v~~ 291 (292)
T PF04952_consen 220 PEWVRAPAGGLF-EPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKVAK 291 (292)
T ss_dssp CCEEESSSSEEE-EETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEEEE
T ss_pred ceeecCCccEEE-EEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEEec
Confidence 356899999955 7789999999999999 5554332 34689999999996 4568888999999998864
No 252
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.51 E-value=1.7 Score=45.59 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=31.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDAD 71 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d 71 (765)
-.+++|.|+|..+..+++-++.+||+|++++..++
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46999999999999999999999999998875544
No 253
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=89.51 E-value=0.36 Score=54.28 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEEe
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ea 682 (765)
...|.++.+|+|.+++|++||.|++||+|+.|+.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 4566777777777777777777777777777653
No 254
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=89.38 E-value=0.97 Score=51.36 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.4
Q ss_pred CCcccCCCcceEEEEEcCCCCeecCCCeEEEEEe
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ea 682 (765)
...|+||..|+|..+.+.+|+.|..|++|+.|..
T Consensus 253 ~~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~ 286 (421)
T TIGR03794 253 NTRIVSQHSGRVIELNYTPGQLVAAGAPLASLEV 286 (421)
T ss_pred CCeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence 3679999999999999999999999999999953
No 255
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=89.34 E-value=0.37 Score=53.14 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=32.3
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecc
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMK 684 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamK 684 (765)
..|.||..|+|.++.|++||.|..||+|+.++.++
T Consensus 46 ~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 46 NEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 45999999999999999999999999999998653
No 256
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=89.10 E-value=0.67 Score=55.09 Aligned_cols=67 Identities=24% Similarity=0.396 Sum_probs=51.4
Q ss_pred CCcccCCCcceEEEEEcCCCCeecC----CCeEEEEEecceEEEEEcCCCeEEEEEE-----------------------
Q 041518 649 PGSVLSPMAGLVVKVLANDGTKVEE----GQPILVLEAMKMEHVVKAPTTGVVHGLQ----------------------- 701 (765)
Q Consensus 649 ~~~v~ap~~G~v~~~~v~~Gd~V~~----G~~l~~~eamKm~~~i~ap~~G~v~~~~----------------------- 701 (765)
...|.||+.|+++.+. ++-|.|-+ |+-+++.=+ +..|.||++|+|+.+.
T Consensus 498 ~~~v~aP~~G~vi~l~-~v~D~vFs~~~~G~GvaI~P~---~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGid 573 (648)
T PRK10255 498 IAELVSPITGDVVALD-QVPDEAFASKAVGDGVAVKPT---DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGID 573 (648)
T ss_pred ceEEEecCCcEEEEcc-cCcchhhhcccccCcEEEeCC---CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccc
Confidence 3458999999999874 44454443 777777654 3688999999998763
Q ss_pred ------------cCCCCccCCCCeEEEEEe
Q 041518 702 ------------VTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 702 ------------~~~G~~v~~g~~l~~i~~ 719 (765)
+++||.|+.||+|++++.
T Consensus 574 TV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 574 TVALEGKGFKRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred hhccCCCCceEEecCCCEEcCCCEEEEEcH
Confidence 679999999999999874
No 257
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=89.02 E-value=0.4 Score=52.18 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=32.6
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..|.++.+|+|.++++++||.|.+|++|++|++.+
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHH
Confidence 56999999999999999999999999999999765
No 258
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=88.96 E-value=0.34 Score=52.12 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=31.4
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM 683 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam 683 (765)
..|.||.+|+|.+++|++||+|+.||.|+.|+.-
T Consensus 116 v~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 116 VEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 4589999999999999999999999999999853
No 259
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=88.88 E-value=0.6 Score=50.51 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=33.2
Q ss_pred EEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 686 EHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 686 ~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
+..|.||.+|+|.++++++||.|..|++|+.++..+
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~ 61 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDD 61 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHH
Confidence 568999999999999999999999999999998654
No 260
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=88.77 E-value=1.2 Score=53.48 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=33.7
Q ss_pred EEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEE
Q 041518 662 KVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQ 701 (765)
Q Consensus 662 ~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~ 701 (765)
+..|++||.|.+||+|+.-+.. +...|.||.+|+|+.|.
T Consensus 50 ~~~V~~GD~V~~GQ~i~~~~~~-~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 50 ELCVKVGDRVLKGQPLTQGDGR-MSLPVHAPTSGTVVAIE 88 (695)
T ss_pred cceeCcCCEEcCCCEeeecCCC-ceeEEeCCCCeEEeeec
Confidence 6899999999999999966433 56899999999999874
No 261
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=88.72 E-value=0.28 Score=46.94 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=38.1
Q ss_pred cCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCC
Q 041518 665 ANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQ 706 (765)
Q Consensus 665 v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~ 706 (765)
-++|..|.+|+.+..+|+-|...+|.+|.+|.|++|+-+-.+
T Consensus 88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E 129 (172)
T KOG3373|consen 88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129 (172)
T ss_pred CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence 478999999999999999999999999999999999865443
No 262
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=88.66 E-value=0.69 Score=52.18 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=44.2
Q ss_pred EcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 664 LANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 664 ~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
.|+.++.-..=.....+++.. +.+|.++.+|+|.++.+++||.|++|++|++|++.+
T Consensus 44 ~v~~~~~~~~~~~~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 44 TVKTEPLQITTELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred eeeEeecceeEEEEEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence 344444333334456677755 788999999999999999999999999999998764
No 263
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=88.56 E-value=1.2 Score=53.16 Aligned_cols=14 Identities=43% Similarity=0.802 Sum_probs=9.6
Q ss_pred CcccCCCcceEEEE
Q 041518 650 GSVLSPMAGLVVKV 663 (765)
Q Consensus 650 ~~v~ap~~G~v~~~ 663 (765)
+.|.||..|+|..+
T Consensus 500 ~~v~aP~~G~v~~~ 513 (610)
T TIGR01995 500 GEVVAPVDGTVTAV 513 (610)
T ss_pred CEEECCCCeEEEEE
Confidence 56777777777644
No 264
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=88.51 E-value=0.83 Score=48.06 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.0
Q ss_pred EEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 686 EHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 686 ~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
...|+||++|+|..+.+.+|+.|..|++|+.|.+.+
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG 123 (265)
T ss_pred eEEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence 347999999999999999999999999999886543
No 265
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=88.46 E-value=1.1 Score=52.90 Aligned_cols=47 Identities=34% Similarity=0.523 Sum_probs=37.8
Q ss_pred EEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcceeee----ecceee
Q 041518 686 EHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQLAV----HGFVVQ 732 (765)
Q Consensus 686 ~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~~~~~----~~~~~~ 732 (765)
...|.||..|+|.++++++||.|+.|++|+.++.......| .|.|.+
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~ 574 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRG 574 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEE
Confidence 34799999999999999999999999999999876433323 555544
No 266
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=88.44 E-value=2.4 Score=53.23 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=90.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHC-CCe------------EEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHH
Q 041518 37 IEKILIANRGEIAYRIMRTAKRL-GIR------------TVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVD 103 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~-Gi~------------vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~ 103 (765)
||||||+|.|.++..+++.+.+. +++ .++|. +.+... ...+++..- +.....-++.|.+.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~Va-D~~~~~-a~~la~~~~--~~~~v~lDv~D~e~L~~ 644 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVA-SLYLKD-AKETVEGIE--NAEAVQLDVSDSESLLK 644 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEE-CCCHHH-HHHHHHhcC--CCceEEeecCCHHHHHH
Confidence 78999999999999999998765 333 23332 222211 112222110 00001124578888888
Q ss_pred HHHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHH--HHH
Q 041518 104 AAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDL--MKS 181 (765)
Q Consensus 104 ~a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e--~~~ 181 (765)
+++ ++|+|+....+ .-+..++.+|.++|..++--+.. ..+-..+.+.++++|+...+... .....+. +.+
T Consensus 645 ~v~--~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~----~~e~~~L~e~Ak~AGV~~m~e~G-lDPGid~~lA~~ 716 (1042)
T PLN02819 645 YVS--QVDVVISLLPA-SCHAVVAKACIELKKHLVTASYV----SEEMSALDSKAKEAGITILCEMG-LDPGIDHMMAMK 716 (1042)
T ss_pred hhc--CCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCC----HHHHHHHHHHHHHcCCEEEECCc-cCHHHHHHHHHH
Confidence 765 48999977433 23578899999999998854421 11224566788999999877654 3223444 344
Q ss_pred HHHHh----CCcEEEeecCCC
Q 041518 182 EAAKI----GYPILIKPTHGG 198 (765)
Q Consensus 182 ~~~~i----g~PvVVKP~~g~ 198 (765)
.+++. |-...++-..|+
T Consensus 717 ~Id~~~~~~GkI~s~~s~~GG 737 (1042)
T PLN02819 717 MIDDAHERGGKVKSFTSYCGG 737 (1042)
T ss_pred HHHhhcccCCcEEEEEEEEcC
Confidence 45444 666666666655
No 267
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=88.19 E-value=0.81 Score=54.44 Aligned_cols=65 Identities=29% Similarity=0.470 Sum_probs=52.8
Q ss_pred cccCCCcceEEEEEcCCCCeecC----CCeEEEEEecceEEEEEcCCCeEEEEE--------------------------
Q 041518 651 SVLSPMAGLVVKVLANDGTKVEE----GQPILVLEAMKMEHVVKAPTTGVVHGL-------------------------- 700 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~~Gd~V~~----G~~l~~~eamKm~~~i~ap~~G~v~~~-------------------------- 700 (765)
.|.||+.|+++.+ -++-|.|-+ ||-+++.= -+..|.||++|+|..+
T Consensus 464 ~i~aP~~G~~~~l-~~v~D~vFs~~~~G~G~ai~P---~~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv 539 (610)
T TIGR01995 464 SLYAPVAGEMLPL-NEVPDEVFSSGAMGKGIAILP---TEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTV 539 (610)
T ss_pred eeccccceEEeeH-hhCCCccccccCcCCceEeeC---CCCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchh
Confidence 5999999999987 566677766 88887754 3468999999998865
Q ss_pred ---------EcCCCCccCCCCeEEEEEe
Q 041518 701 ---------QVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 701 ---------~~~~G~~v~~g~~l~~i~~ 719 (765)
++++||.|++||+|++++.
T Consensus 540 ~l~g~gF~~~v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 540 ELNGEGFEILVKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred ccCCCCeEEEecCcCEEcCCCEEEEecH
Confidence 4678999999999999874
No 268
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=88.18 E-value=0.64 Score=43.23 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=26.4
Q ss_pred cCCCcceEEEEEcCCCCeecCCCeEEEEEe
Q 041518 653 LSPMAGLVVKVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 653 ~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ea 682 (765)
+.-+.|+=-+++|++||+|++||+|+.+.-
T Consensus 74 TV~L~G~gF~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 74 TVKLNGEGFTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred eeecCCCceEEEecCCCEEcCCCEEEEEcH
Confidence 456788888999999999999999999873
No 269
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=88.16 E-value=0.76 Score=54.58 Aligned_cols=65 Identities=29% Similarity=0.497 Sum_probs=47.4
Q ss_pred cccCCCcceEEEEEcCCCCeecC----CCeEEEEEecceEEEEEcCCCeEEEEE--------------------------
Q 041518 651 SVLSPMAGLVVKVLANDGTKVEE----GQPILVLEAMKMEHVVKAPTTGVVHGL-------------------------- 700 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~~Gd~V~~----G~~l~~~eamKm~~~i~ap~~G~v~~~-------------------------- 700 (765)
.|.||+.|+++.+ -++-|.|-+ ||-+++.=. +..|.||++|+|+.+
T Consensus 480 ~i~aP~~G~v~~L-~~v~D~vFs~~~mG~G~AI~P~---~~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV 555 (627)
T PRK09824 480 GICSPMTGEVVPL-EQVADTTFASGLLGKGIAILPS---VGEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTV 555 (627)
T ss_pred hcccccceEEeeH-HHCCCccccccccCCceEecCC---CCeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhh
Confidence 4778888888776 366666655 666666433 357777777777754
Q ss_pred ---------EcCCCCccCCCCeEEEEEe
Q 041518 701 ---------QVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 701 ---------~~~~G~~v~~g~~l~~i~~ 719 (765)
++++||.|++||+|++++.
T Consensus 556 ~L~G~gF~~~v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 556 KLDGKFFTAHVNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred hcCCCCceEEecCCCEEcCCCEEEEEcH
Confidence 5669999999999999874
No 270
>PRK06988 putative formyltransferase; Provisional
Probab=88.13 E-value=1.4 Score=48.02 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=33.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCC
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRD 73 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~ 73 (765)
||.||+++|.++++...++.+.+.|+++++|.+.+|..
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~ 38 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNP 38 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 34699999999999999999999999999999887653
No 271
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=88.11 E-value=0.46 Score=54.12 Aligned_cols=33 Identities=24% Similarity=0.544 Sum_probs=31.2
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEe
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ea 682 (765)
..|.||..|+|.+|++++||.|+.||+|+.||.
T Consensus 135 ~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 135 IDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred eEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 569999999999999999999999999999975
No 272
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=88.10 E-value=1.3 Score=52.53 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=33.4
Q ss_pred EEEcCCCCeecCCCeEEEEEecce-------EEEEEcCCCeEEEEEEcCCCCccCCCCeEEEE
Q 041518 662 KVLANDGTKVEEGQPILVLEAMKM-------EHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRL 717 (765)
Q Consensus 662 ~~~v~~Gd~V~~G~~l~~~eamKm-------~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i 717 (765)
+.+|++||+|++||+|+.++-.+. ...+.-.-......+....+..|..|+.+..+
T Consensus 563 ~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 563 TAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred eEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccccccceeeccCCcccCCCeEEEe
Confidence 778999999999999999874321 12211111111222233345567888877654
No 273
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=87.99 E-value=1.9 Score=48.44 Aligned_cols=35 Identities=17% Similarity=0.448 Sum_probs=29.8
Q ss_pred CCCCCCcccCCCcceEEEE-------EcCCCCeecCCCeEEE
Q 041518 645 ATGPPGSVLSPMAGLVVKV-------LANDGTKVEEGQPILV 679 (765)
Q Consensus 645 ~~~~~~~v~ap~~G~v~~~-------~v~~Gd~V~~G~~l~~ 679 (765)
....+..|.|-.+|.|+++ .|++||.|++||+|+.
T Consensus 185 ~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 185 DKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred cCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 3456788999999999976 6899999999999974
No 274
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=87.90 E-value=1.2 Score=52.51 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=53.0
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEE-------EEEecc-eEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPIL-------VLEAMK-MEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~-------~~eamK-m~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..+.-.++|....|.|+.+..+..-+... ...+.+ -...|.||..|+|.++++++||.|+.|++|+.++...
T Consensus 473 ~~~~~~vnG~~~~V~v~d~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamK 552 (582)
T TIGR01108 473 GSYTVEVEGKAFVVKVSPGGDVSQITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMK 552 (582)
T ss_pred eEEEEEECCEEEEEEEcCCccccccccccccccccccccCCCCCCCeEeCCccEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 34566667777777666654332110000 000111 1357999999999999999999999999999999764
Q ss_pred ceeee----ecceee
Q 041518 722 IQLAV----HGFVVQ 732 (765)
Q Consensus 722 ~~~~~----~~~~~~ 732 (765)
....+ .|.|..
T Consensus 553 me~~i~ap~~G~V~~ 567 (582)
T TIGR01108 553 METEIKAAAAGTVRE 567 (582)
T ss_pred ceeEEecCCCeEEEE
Confidence 33333 555554
No 275
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=87.53 E-value=0.54 Score=51.00 Aligned_cols=43 Identities=35% Similarity=0.507 Sum_probs=29.8
Q ss_pred EEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcce
Q 041518 678 LVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQ 723 (765)
Q Consensus 678 ~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~~ 723 (765)
..+++ =+..|.++.+|+| ++++++||.|.+|++|++++..+..
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~ 57 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSDLQ 57 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HHHH
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChhhh
Confidence 44555 4578999999999 9999999999999999999976543
No 276
>PRK12999 pyruvate carboxylase; Reviewed
Probab=87.27 E-value=2.3 Score=54.25 Aligned_cols=130 Identities=28% Similarity=0.411 Sum_probs=103.0
Q ss_pred ceEEEEEC-CEEEEEEEEEeeccc--ce-EEEEEeCCeeEEEEEecCCCCCCccccccccccccCCCCCCcccCCCcceE
Q 041518 585 HKFRVEFD-VVSMDVHLAVYNKGR--IK-HIHAWHGLHHHHFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGLV 660 (765)
Q Consensus 585 ~~l~~~~~-G~~~~~~~~~~~~~~--~~-~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v 660 (765)
..+.+++. |+...+.+...+... +. .+.+..+|+.|.+++.+..... .........+..+..|.|||||+|
T Consensus 1013 e~~~~~~~~gk~~~i~~~~~~~~~~~g~~~~~~~vnG~~~~V~v~d~~~~~-----~~~~~~~a~~~~~~~v~apm~G~v 1087 (1146)
T PRK12999 1013 EEIEVEIEPGKTLIIKLEAIGEPDEDGMRTVYFELNGQPREVQVRDRSVKS-----TVAAREKADPGNPGHVGAPMPGSV 1087 (1146)
T ss_pred ceEEeecCCCceeEEEeecccCcccCCcEEEEEEECCEEEEEEEecCcccc-----ccccccccCCCCCceEeCCceEEE
Confidence 34555655 777777665544211 11 3677799999999998765321 111123345567788999999999
Q ss_pred EEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 661 VKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 661 ~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
++|+|++||.|++||+|+++||||||++|+||.+|+|+++.+++|+.|..|++|++|++
T Consensus 1088 ~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1088 VTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred EEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999863
No 277
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.03 E-value=3.4 Score=47.58 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=40.0
Q ss_pred CCcEEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCCC
Q 041518 187 GYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQP 241 (765)
Q Consensus 187 g~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~gg 241 (765)
....|+||..-.-|+|++++++.+++............ --.++.+.++.||+.+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s-~~~~~~~vv~~yi~~p 252 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFIS-ENNDEGYVVSAYIDRP 252 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhccccccc-ccccccceeeeeccCc
Confidence 46899999999999999999999998887643221100 0114688899998865
No 278
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.93 E-value=2.8 Score=44.92 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=51.9
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccc-cEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 38 EKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSA-DEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 38 kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~a-D~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
++|||.| .|-|+...+..+.+.|+++++++.-.+.....+... -..+. -+..|.+.+-++..++++|+|+-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~-------gDi~D~~~L~~vf~~~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYE-------GDLLDRALLTAVFEENKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEE-------eccccHHHHHHHHHhcCCCEEEE
Confidence 3799998 689999999999999999998875444332222211 12332 24588889999999999999983
No 279
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=86.72 E-value=4.1 Score=40.60 Aligned_cols=71 Identities=21% Similarity=0.329 Sum_probs=48.9
Q ss_pred EEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 39 KILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 39 kILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
||.|+| .|..+.+|++.+.++|+++.++.-++...... -+..+ + ..+..|.+.+.+.+ .+.|+|+..+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~~i-~-----q~Difd~~~~a~~l--~g~DaVIsA~ 70 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGVTI-L-----QKDIFDLTSLASDL--AGHDAVISAF 70 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---cccee-e-----cccccChhhhHhhh--cCCceEEEec
Confidence 778887 78899999999999999999998765543221 11111 1 12345666664444 5789999888
Q ss_pred Ccc
Q 041518 118 GFL 120 (765)
Q Consensus 118 g~l 120 (765)
++.
T Consensus 71 ~~~ 73 (211)
T COG2910 71 GAG 73 (211)
T ss_pred cCC
Confidence 775
No 280
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=86.71 E-value=2.8 Score=47.01 Aligned_cols=34 Identities=18% Similarity=0.500 Sum_probs=29.3
Q ss_pred CCCCCcccCCCcceEEEE-------EcCCCCeecCCCeEEE
Q 041518 646 TGPPGSVLSPMAGLVVKV-------LANDGTKVEEGQPILV 679 (765)
Q Consensus 646 ~~~~~~v~ap~~G~v~~~-------~v~~Gd~V~~G~~l~~ 679 (765)
...+..|.|-..|.|+++ .|++||.|++||.|+.
T Consensus 183 ~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 183 KAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred cCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 345778999999999976 5889999999999985
No 281
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.69 E-value=0.99 Score=51.90 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=32.8
Q ss_pred EEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 686 EHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 686 ~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
...|.++..|+|.+++|++||.|.+|++|+.+++..
T Consensus 59 ~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 59 LSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred eEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 356889999999999999999999999999998765
No 282
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.55 E-value=0.92 Score=51.16 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=36.1
Q ss_pred EEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcc
Q 041518 680 LEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHI 722 (765)
Q Consensus 680 ~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~ 722 (765)
|...+-...|.|+.+|+|.+++|++||.|+.|++|+.++....
T Consensus 37 v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 37 VVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred EEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccchh
Confidence 3344445668899999999999999999999999999987653
No 283
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=86.34 E-value=0.66 Score=52.34 Aligned_cols=34 Identities=26% Similarity=0.591 Sum_probs=31.6
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM 683 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam 683 (765)
..|.||..|+|.+++|++||.|+.||+|++|+.-
T Consensus 88 ~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 88 VDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred EEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 4689999999999999999999999999999854
No 284
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=86.23 E-value=0.61 Score=44.10 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=21.5
Q ss_pred CCcceEEEEEcCCCCeecCCCeEEEEEecc
Q 041518 655 PMAGLVVKVLANDGTKVEEGQPILVLEAMK 684 (765)
Q Consensus 655 p~~G~v~~~~v~~Gd~V~~G~~l~~~eamK 684 (765)
-+.|+--+++|++||+|++||+|+.+.-.+
T Consensus 80 ~L~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 80 KLNGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp GGTTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred hcCCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 355666688999999999999999987443
No 285
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=85.96 E-value=1.3 Score=42.05 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=46.2
Q ss_pred EEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCCc
Q 041518 40 ILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGF 119 (765)
Q Consensus 40 ILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g~ 119 (765)
++|+|+|..+..+++-++.+|+++++++..++. ...++.... .+.+.+.+...-..-++|+...+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~----~~~~~~~~~----------~~~~~~~~~~~~~~~t~Vv~th~h 66 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER----FPEADEVIC----------IPPDDILEDLEIDPNTAVVMTHDH 66 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----TTSSEEEC----------SHHHHHHHHC-S-TT-EEE--S-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc----cCCCCccEe----------cChHHHHhccCCCCCeEEEEcCCc
Confidence 689999999999999999999999998866442 234454332 223344433322233456545444
Q ss_pred ccccHHHHHHHHHCCCcEEC
Q 041518 120 LSESADFAQLCGDNGLTFIG 139 (765)
Q Consensus 120 lsE~~~~a~~~~~~Gl~~~G 139 (765)
-.+...+ +.+.+....|+|
T Consensus 67 ~~D~~~L-~~~l~~~~~YiG 85 (136)
T PF13478_consen 67 ELDAEAL-EAALASPARYIG 85 (136)
T ss_dssp CCHHHHH-HHHTTSS-SEEE
T ss_pred hhHHHHH-HHHHcCCCCEEE
Confidence 4333333 333344677775
No 286
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=85.82 E-value=3.9 Score=46.30 Aligned_cols=34 Identities=32% Similarity=0.562 Sum_probs=30.4
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
..+.||..|.|.+++|++||.|..|+.|+.++..
T Consensus 602 ~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AM 635 (670)
T KOG0238|consen 602 GVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAM 635 (670)
T ss_pred CceecCCCCeeeeeeccchhhhcccCceEEEEec
Confidence 4489999999999999999999999998888643
No 287
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=85.58 E-value=0.59 Score=43.22 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCC-CcCcCCCCH---HHHHHHHHHhCCCEEEeC-CCccccc
Q 041518 49 AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP-PARLSYLNG---SSIVDAAIRTGAQAIHPG-YGFLSES 123 (765)
Q Consensus 49 a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~-~~~~syld~---~~Il~~a~~~~~DaV~pg-~g~lsE~ 123 (765)
|..|++++.+.+|+++.++-+.+..............-... ......... ...........+|.|+|. .|...|+
T Consensus 21 a~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvvFp~lHG~~GED 100 (117)
T PF01820_consen 21 ARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISASLIEKNEQKLEVDVVFPVLHGPNGED 100 (117)
T ss_dssp HHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEEEETTESTTCTTCSEEEEECCSTTTSS
T ss_pred HHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhccccccccccccccccccccccCCEEEEeccCCCCcc
Confidence 78899999999999999987766632221110000000000 000000000 000000004678999998 6888999
Q ss_pred HHHHHHHHHCCCcEECC
Q 041518 124 ADFAQLCGDNGLTFIGP 140 (765)
Q Consensus 124 ~~~a~~~~~~Gl~~~Gp 140 (765)
..+..+++.+++||+|+
T Consensus 101 G~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 101 GTIQGLLELLGIPYVGC 117 (117)
T ss_dssp SHHHHHHHHTT-EBSSS
T ss_pred cHHHHHHHHcCCCCcCC
Confidence 99999999999999984
No 288
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=85.43 E-value=1.9 Score=51.42 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEe
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~ea 682 (765)
+.|+=-+.+|++||+|++||+|+++.-
T Consensus 577 l~G~gF~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 577 LEGKGFKRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred cCCCCceEEecCCCEEcCCCEEEEEcH
Confidence 344444778999999999999999874
No 289
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=85.37 E-value=0.71 Score=52.50 Aligned_cols=38 Identities=37% Similarity=0.517 Sum_probs=35.1
Q ss_pred EEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEE
Q 041518 662 KVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQ 701 (765)
Q Consensus 662 ~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~ 701 (765)
...|++||+|.+||+|..=+. -...+.||.+|+|.+|.
T Consensus 46 ~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 46 ILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred ceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 578999999999999999888 77899999999999997
No 290
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=85.26 E-value=0.98 Score=51.73 Aligned_cols=34 Identities=38% Similarity=0.554 Sum_probs=31.1
Q ss_pred EEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 687 HVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 687 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
-.+.||.+|+|..|.|++|+.|.+||+|++++.-
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAM 609 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAM 609 (645)
T ss_pred CceecCCCceEEEEEecCCCEecCCCeEEEeEeh
Confidence 3478999999999999999999999999999863
No 291
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=85.22 E-value=1.2 Score=41.75 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=25.1
Q ss_pred cCCCcceEEEEEcCCCCeecCCCeEEEEEe
Q 041518 653 LSPMAGLVVKVLANDGTKVEEGQPILVLEA 682 (765)
Q Consensus 653 ~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ea 682 (765)
+.-+.|.=-+++|++||+|++||+|+.+.-
T Consensus 74 Tv~l~g~gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 74 TVKLNGEGFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred eeecCCCceEEEecCCCEEcCCCEEEEEcH
Confidence 345667777889999999999999999863
No 292
>PLN00016 RNA-binding protein; Provisional
Probab=85.05 E-value=5.9 Score=44.16 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCCCEEEEE----c-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcc-----cccc------cEEEEcCCCCcCcCCCCH
Q 041518 35 QRIEKILIA----N-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLH-----VKSA------DEAIRIGPPPARLSYLNG 98 (765)
Q Consensus 35 ~~~kkILI~----g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~-----~~~a------D~~~~i~~~~~~~syld~ 98 (765)
.|++||||+ | .|.++..+++.+.+.|++|+++..+....... ..+. -+.+. .|.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~----------~D~ 119 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW----------GDP 119 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEE----------ecH
Confidence 356899999 7 58899999999999999999887553321000 0000 01111 233
Q ss_pred HHHHHHHHHhCCCEEEeCCCcccc-cHHHHHHHHHCCCc-EE
Q 041518 99 SSIVDAAIRTGAQAIHPGYGFLSE-SADFAQLCGDNGLT-FI 138 (765)
Q Consensus 99 ~~Il~~a~~~~~DaV~pg~g~lsE-~~~~a~~~~~~Gl~-~~ 138 (765)
..+.++....++|.|+-..+...+ ...+.+++.+.|+. |+
T Consensus 120 ~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 120 ADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred HHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 334444444678988865432111 12456677777873 44
No 293
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=84.96 E-value=0.44 Score=55.86 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=102.1
Q ss_pred HHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCH-HHHHHHHHH----------hCCcEEEeec
Q 041518 127 AQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDI-DLMKSEAAK----------IGYPILIKPT 195 (765)
Q Consensus 127 a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~-~e~~~~~~~----------ig~PvVVKP~ 195 (765)
|.+..++.-||+-++...-..+.|.-...++|+..|||+|++.......+ .++..+++. +.-|+|=||+
T Consensus 107 AiaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPV 186 (1018)
T KOG1057|consen 107 AVAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPV 186 (1018)
T ss_pred HHHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCC
Confidence 45556777788889999999999999999999999999998765432221 233333322 2359999998
Q ss_pred CCC--------------CCccE-EEECChhHHHHHHHHHHHHHHhcCCCCcEEEecccCC-CeeEEEEEEEeccccEEEE
Q 041518 196 HGG--------------GGKGM-RIVQSPNDFVDSFLGAQREAAASFGINTILLEKYITQ-PRHIEVQIFGDKYGKVLHL 259 (765)
Q Consensus 196 ~g~--------------Gg~Gv-~~v~s~~el~~a~~~~~~ea~~~fg~~~vlVEeyI~g-grei~v~v~~d~~g~vv~l 259 (765)
.|- ||+-. ++|.|......-=...+ ..+.++.|+|++- |..+-|-.++- ...+.
T Consensus 187 s~EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vR-------keGSyIYEeFMptdgtDVKvYTVGp---~YaHA 256 (1018)
T KOG1057|consen 187 SAEDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVR-------KEGSYIYEEFMPTDGTDVKVYTVGP---DYAHA 256 (1018)
T ss_pred CcccccEEEEecCCCCccHHHHHHHhcccccccCCccccc-------cccceehhhhcCCCCccceEEeeCc---chhhh
Confidence 654 22211 22333221100000111 1378999999983 23333333321 11111
Q ss_pred Eeeecc----ccccceeeee-ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecc
Q 041518 260 YERDCS----VQRRHQKIIE-EAPAPNVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNT 327 (765)
Q Consensus 260 ~~r~~s----~~~~~~k~~e-~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~ 327 (765)
-.|..+ ..+|....-| ..|. .++++. ..+|.+++-|++- -+..+|++.. +|+-|++.+|.
T Consensus 257 EaRKSPvvDGkV~Rns~GKEvRYpv-~Ls~~E----K~iA~KVciAF~Q-~VCGFDLLRa--~G~SYVcDVNG 321 (1018)
T KOG1057|consen 257 EARKSPVVDGKVERNSDGKEVRYPV-ILNSSE----KQIARKVCIAFKQ-TVCGFDLLRA--NGKSYVCDVNG 321 (1018)
T ss_pred hhccCccccceeeecCCCceeecee-ecChhh----HHHHhHHHhhccc-cccchHHhhc--CCceEEEeccc
Confidence 111111 0111111111 1355 455443 3567777777764 4566888877 79999999996
No 294
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=84.90 E-value=3.7 Score=39.98 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=28.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEe
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~ 67 (765)
-++|||+|+|+.|.+.++.+-+.|.++.+|.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3799999999999999999999999988874
No 295
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.46 E-value=2 Score=50.70 Aligned_cols=117 Identities=13% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 35 ~~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
.+..+++|+|.|..+..+++.+++.|+++++++.|++.-....+. +..+..+. ..+ +++++.+.-.++|+++
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-g~~~i~GD------~~~-~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-GIRAVLGN------AAN-EEIMQLAHLDCARWLL 486 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-CCeEEEcC------CCC-HHHHHhcCccccCEEE
Confidence 455799999999999999999999999999998776543222222 22222222 233 4555556667888777
Q ss_pred eCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCC
Q 041518 115 PGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPL 165 (765)
Q Consensus 115 pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpv 165 (765)
...+...++........+.. |....+.+..|.. ..+.+++.|+..
T Consensus 487 v~~~~~~~~~~iv~~~~~~~-----~~~~iiar~~~~~-~~~~l~~~Gad~ 531 (558)
T PRK10669 487 LTIPNGYEAGEIVASAREKR-----PDIEIIARAHYDD-EVAYITERGANQ 531 (558)
T ss_pred EEcCChHHHHHHHHHHHHHC-----CCCeEEEEECCHH-HHHHHHHcCCCE
Confidence 55432223322222222211 1222223344543 334456777664
No 296
>PLN02775 Probable dihydrodipicolinate reductase
Probab=84.36 E-value=18 Score=38.83 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=70.9
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEec-CCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYS-DADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s-~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
.-||+|.| .|.++..+++++.+.+++.++... .++.......+.+.-+.+.+ ..|.+.++...++..+|.|+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~------~~dl~~~l~~~~~~~~~~Vv 84 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVG------PSEREAVLSSVKAEYPNLIV 84 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeec------CccHHHHHHHhhccCCCEEE
Confidence 34999999 789999999998889999887532 11111111123322222211 16778888777777899544
Q ss_pred eCCCccccc--HHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEE
Q 041518 115 PGYGFLSES--ADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILI 192 (765)
Q Consensus 115 pg~g~lsE~--~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVV 192 (765)
.- |-.-. ....+.|. ++|+|.+=++++. +.+++.+++++-+.|+++
T Consensus 85 ID--FT~P~a~~~~~~~~~----------------------------~~g~~~VvGTTG~--~~e~l~~~~~~~~i~vv~ 132 (286)
T PLN02775 85 VD--YTLPDAVNDNAELYC----------------------------KNGLPFVMGTTGG--DRDRLLKDVEESGVYAVI 132 (286)
T ss_pred EE--CCChHHHHHHHHHHH----------------------------HCCCCEEEECCCC--CHHHHHHHHhcCCccEEE
Confidence 33 22211 12233344 4455544555555 556666666555667777
Q ss_pred eecCCCC
Q 041518 193 KPTHGGG 199 (765)
Q Consensus 193 KP~~g~G 199 (765)
-|..+-|
T Consensus 133 apNfSiG 139 (286)
T PLN02775 133 APQMGKQ 139 (286)
T ss_pred ECcccHH
Confidence 7765443
No 297
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.27 E-value=3.7 Score=41.88 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
-+++||+|+|..|.+-++.+.+.|.++.++..+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 369999999999999999999999998777543
No 298
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=83.58 E-value=20 Score=38.81 Aligned_cols=143 Identities=13% Similarity=0.174 Sum_probs=86.0
Q ss_pred HHHHHHHHHhCCcEEEeecCCCCCc-------cEEEECChhHHHHHHHHHHHHHH---hcC------------CCCcEEE
Q 041518 177 DLMKSEAAKIGYPILIKPTHGGGGK-------GMRIVQSPNDFVDSFLGAQREAA---ASF------------GINTILL 234 (765)
Q Consensus 177 ~e~~~~~~~ig~PvVVKP~~g~Gg~-------Gv~~v~s~~el~~a~~~~~~ea~---~~f------------g~~~vlV 234 (765)
+++.++++++|.-|+.|-.+.+--. +--.|++..|+...++....... ..| ..-.+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 4577788899988999976665322 23467888776655543221111 001 0246778
Q ss_pred ecccCCCeeEEEEEEEeccccEEEEEeeeccccccceeeeeecCCCCCCHHHHHHHHHHH-HHHHHHcCCCceeEEEEEE
Q 041518 235 EKYITQPRHIEVQIFGDKYGKVLHLYERDCSVQRRHQKIIEEAPAPNVTHDFRALLGQAA-VSAAKAVSYHNAGTVEFIV 313 (765)
Q Consensus 235 EeyI~ggrei~v~v~~d~~g~vv~l~~r~~s~~~~~~k~~e~~Pa~~l~~~~~~~l~~~a-~~i~~alg~~G~~~vEf~~ 313 (765)
-+|..-....+.-+|.- +++++.+..|++.+...- . ....+++..|.+.. ..+...+.+ .-+.+|+.+
T Consensus 155 rkw~~l~p~~EFRcFV~-~~~LiaISQr~~~~~~~L-------~--~~~~~I~~~I~~F~~~~I~~~~~~-~~~v~DVyi 223 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR-NRKLIAISQRDLNYYDFL-------E--ELKEEIRSKIQEFFEEHIKPKFPL-DNYVFDVYI 223 (299)
T ss_pred eccccCCccceEEEEEE-CCEEEEEecccccccHHH-------H--HHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEEEE
Confidence 88886555667777763 468898887766221110 0 12234444455544 234445554 456799999
Q ss_pred ECCCCcEEEEEecccCC
Q 041518 314 DTVSDQFYFMEMNTRLQ 330 (765)
Q Consensus 314 ~~~~g~~~~iEiN~R~~ 330 (765)
+.+.+++++||+||=-.
T Consensus 224 ~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 224 TRDKDKVWLIDFNPFGP 240 (299)
T ss_pred cCCCCeEEEEEecCCcc
Confidence 97337899999999654
No 299
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.51 E-value=4 Score=41.56 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEe
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~ 67 (765)
-|+|||+|+|++|.+.++.+.+.|.+++++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 4799999999999999999999999887774
No 300
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=83.27 E-value=6.7 Score=43.71 Aligned_cols=70 Identities=17% Similarity=0.065 Sum_probs=44.4
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 38 EKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 38 kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
+||||+|+ |.++..+++.+.+.|++++++....+..........+.+.. +..+.+.+..+++ ++|.|+-.
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~--~~D~Vih~ 92 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLV-------DLRVMENCLKVTK--GVDHVFNL 92 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEEC-------CCCCHHHHHHHHh--CCCEEEEc
Confidence 58999995 99999999999999999998864332211111111222221 3355566655553 68987744
No 301
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.16 E-value=1.8 Score=39.26 Aligned_cols=85 Identities=21% Similarity=0.127 Sum_probs=50.3
Q ss_pred EEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCCc
Q 041518 40 ILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGF 119 (765)
Q Consensus 40 ILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g~ 119 (765)
|+|+|.|..+..+++.+++.+++++++..+++........-...+.- +..+. .+++-+.-.++++++...+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~g-------d~~~~-~~l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYG-------DATDP-EVLERAGIEKADAVVILTDD 72 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES--------TTSH-HHHHHTTGGCESEEEEESSS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccc-------cchhh-hHHhhcCccccCEEEEccCC
Confidence 68999999999999999998889999887654321111111223332 22443 34444455678888876544
Q ss_pred ccccHHHHHHHHH
Q 041518 120 LSESADFAQLCGD 132 (765)
Q Consensus 120 lsE~~~~a~~~~~ 132 (765)
..+|...+..+.+
T Consensus 73 d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 73 DEENLLIALLARE 85 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 302
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=82.99 E-value=6.4 Score=41.79 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=66.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 38 EKILIANRGEIAYRIMRTAKRL-GIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~~-Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
.||.|+|.|.++..+++.+.+. +++++++... +... .+.... + +. ...-|.+.+.+ ..++|+|+-.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~-~~~~--~~~~~~-~--~~--~~~~~~d~~~l-----~~~~DvVve~ 68 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVP-EHSI--DAVRRA-L--GE--AVRVVSSVDAL-----PQRPDLVVEC 68 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEc-CCCH--HHHhhh-h--cc--CCeeeCCHHHh-----ccCCCEEEEC
Confidence 4999999999999999998876 6777776622 2110 011110 0 00 01123455544 4679999865
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCC
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVP 164 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvp 164 (765)
.+.- ....++..+.+.|.+++--++.+..........++.+++.|..
T Consensus 69 t~~~-~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 69 AGHA-ALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 4321 2245667777889988855555443222234566777777764
No 303
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=82.84 E-value=9.1 Score=39.15 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCEEEEEcCcHHHHHHHHH--HHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 37 IEKILIANRGEIAYRIMRT--AKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iira--ar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
.++|+|+|.|.++..+++. ....|++++++..+ ++......... +.+ ...+.+.+++++.++|.++
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~-d~~~~~~~i~g--~~v---------~~~~~l~~li~~~~iD~Vi 151 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV-DPEKIGTKIGG--IPV---------YHIDELEEVVKENDIEIGI 151 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC-ChhhcCCEeCC--eEE---------cCHHHHHHHHHHCCCCEEE
Confidence 3689999999999888875 34579999987644 33211111111 111 2346778888888999988
Q ss_pred eCCCcccccHHHHHHHHHCCCcEE
Q 041518 115 PGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 115 pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
...... ....+.+.+.+.|+..+
T Consensus 152 Ia~P~~-~~~~i~~~l~~~Gi~~i 174 (213)
T PRK05472 152 LTVPAE-AAQEVADRLVEAGIKGI 174 (213)
T ss_pred EeCCch-hHHHHHHHHHHcCCCEE
Confidence 664322 22455677777886544
No 304
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=82.70 E-value=4.5 Score=44.83 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=55.0
Q ss_pred CCEEEEEcCcHH-----HHHHHHHHHHCCCeEEEEecCCCCCCccccc-ccEEEEcCCCCcCc--C----------CCCH
Q 041518 37 IEKILIANRGEI-----AYRIMRTAKRLGIRTVAVYSDADRDSLHVKS-ADEAIRIGPPPARL--S----------YLNG 98 (765)
Q Consensus 37 ~kkILI~g~G~~-----a~~iiraar~~Gi~vvav~s~~d~~~~~~~~-aD~~~~i~~~~~~~--s----------yld~ 98 (765)
||||+|+++|.- |+.+++.+++.|+++..+.++..-....... --..+.++...-.. + ....
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 689999997733 7889999999999998887554322111111 01122232211100 1 0112
Q ss_pred HHHHHHHHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 99 SSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 99 ~~Il~~a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
-..+.+.++.++|+|+..-|+.+ .-..-+....++|++
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s--~p~~~aa~~~~~p~~ 118 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVS--VPVVIGGWLNRVPVL 118 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhh--HHHHHHHHHcCCCEE
Confidence 23456678899999996444433 112233344566655
No 305
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.60 E-value=2.8 Score=39.05 Aligned_cols=52 Identities=33% Similarity=0.504 Sum_probs=45.7
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEE-EEcCCCeEEEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHV-VKAPTTGVVHGLQ 701 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~-i~ap~~G~v~~~~ 701 (765)
.-+.-|.-|-++-.-+..|++|.+|++++-+.+-|-+.. +.+|.+|+|.-+.
T Consensus 92 ~ll~iPvEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 92 ELLLIPVEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred EEEEEecCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 346779999999999999999999999999999998755 8899999997653
No 306
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=82.56 E-value=1.9 Score=45.14 Aligned_cols=51 Identities=24% Similarity=0.501 Sum_probs=39.5
Q ss_pred eEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCcceeeeecceeeeecc
Q 041518 685 MEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQLAVHGFVVQFVQD 736 (765)
Q Consensus 685 m~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~~~~~~~~~~~~~~~ 736 (765)
-|.-|+||.+|++.. .++-||.|++|++|+.|......--+.|-+-...++
T Consensus 163 ~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~~~V~APidGIVrGlird 213 (256)
T TIGR03309 163 HERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGDVPVVAPIDGLLRGLIHE 213 (256)
T ss_pred ceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcCEEEEccCCeEEEEEecC
Confidence 367899999999987 799999999999999998755544445555554333
No 307
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=82.42 E-value=7.2 Score=44.61 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH---CCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 37 IEKILIANRGEIAYRIMRTAKR---LGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~---~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
.+++||+|.|+.+..+++.+++ .|++++++..+.... .... ...+ -+-+.+.+.+.++++++|.|
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~i-------~g~p---Vlg~~~~l~~~i~~~~id~V 192 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSD--RVEV-------AGLP---VLGKLDDLVELVRAHRVDEV 192 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCccc--cccc-------CCCc---ccCCHHHHHHHHHhCCCCEE
Confidence 4789999999999999999875 589988876432221 1111 1101 13466889999999999988
Q ss_pred EeCCCccccc--HHHHHHHHHCCCcEE
Q 041518 114 HPGYGFLSES--ADFAQLCGDNGLTFI 138 (765)
Q Consensus 114 ~pg~g~lsE~--~~~a~~~~~~Gl~~~ 138 (765)
+......++. ..+.+.|+..|+.+.
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V~ 219 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDVR 219 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEEE
Confidence 8664322211 245566777777543
No 308
>PLN02572 UDP-sulfoquinovose synthase
Probab=82.36 E-value=7.7 Score=44.41 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEe
Q 041518 35 QRIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 35 ~~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~ 67 (765)
.++++|||.| .|.++..+++.+.+.|+++++++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 4578999999 58999999999999999998875
No 309
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=82.34 E-value=3.2 Score=35.18 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=42.3
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
||+|+|+|.+++.++..++++|.++.++...+... ...|. ...+.+.+..++.+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~----~~~~~-------------~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL----PGFDP-------------DAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS----TTSSH-------------HHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh----hhcCH-------------HHHHHHHHHHHHCCCEEEe
Confidence 68999999999999999999999998887553331 11111 1224566777777776655
No 310
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=82.27 E-value=19 Score=40.50 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=49.1
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCc------ccc-cc-cEEEEcCCCCcCcCCCCHHHHHHHHHH
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSL------HVK-SA-DEAIRIGPPPARLSYLNGSSIVDAAIR 107 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~------~~~-~a-D~~~~i~~~~~~~syld~~~Il~~a~~ 107 (765)
.+||||+|+ |.++..+++.+.+.|++++++..+...... ... .. .+.+. -+..|.+.+.++++.
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~-------~Dl~d~~~l~~~~~~ 132 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVF-------GDVTDADSLRKVLFS 132 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEE-------eeCCCHHHHHHHHHH
Confidence 569999994 899999999999999999888654322100 000 00 11222 245777888888876
Q ss_pred h--CCCEEEeC
Q 041518 108 T--GAQAIHPG 116 (765)
Q Consensus 108 ~--~~DaV~pg 116 (765)
. ++|.|+..
T Consensus 133 ~~~~~D~Vi~~ 143 (390)
T PLN02657 133 EGDPVDVVVSC 143 (390)
T ss_pred hCCCCcEEEEC
Confidence 5 69998854
No 311
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=82.27 E-value=4.4 Score=47.20 Aligned_cols=78 Identities=36% Similarity=0.671 Sum_probs=73.8
Q ss_pred cccCCCCCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 642 FETATGPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 642 ~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
.++..+..+.|-|||||+|+++.|++|+.|+|||+|+++.|||||+.|.||.+|+|+++.+..|+.++.|+++++++.
T Consensus 1099 PkA~~~~~g~igAPMpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1099 PKADPGVKGHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred ccCCCCCcccccCCCCCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence 456677788999999999999999999999999999999999999999999999999999999999999999999873
No 312
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=82.07 E-value=5.9 Score=42.47 Aligned_cols=83 Identities=14% Similarity=0.273 Sum_probs=54.9
Q ss_pred EEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 39 KILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 39 kILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
||||+| .|.++..+.+.+++.|+++++++.. .+ +..|.+.+.++.++.++|.|+-.-
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~-------dl~d~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIATSRS---------------DL-------DLTDPEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS--------TTSHHHHHHHHHHH--SEEEE--
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------hc-------CCCCHHHHHHHHHHhCCCeEeccc
Confidence 899999 6999999999999999998876322 11 236788999999999999998664
Q ss_pred Cccc-----cc------------HHHHHHHHHCCCcEECCcHH
Q 041518 118 GFLS-----ES------------ADFAQLCGDNGLTFIGPPVS 143 (765)
Q Consensus 118 g~ls-----E~------------~~~a~~~~~~Gl~~~Gp~~e 143 (765)
+... ++ ..++++|...|++++-.|..
T Consensus 60 a~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 60 AYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp ----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEG
T ss_pred eeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeecc
Confidence 3211 11 13566777777776644544
No 313
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=82.05 E-value=1.7 Score=49.34 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=32.0
Q ss_pred EEEEEcCCCeEEEEEE-cCCCCccCCCCeEEEEEeC
Q 041518 686 EHVVKAPTTGVVHGLQ-VTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 686 ~~~i~ap~~G~v~~~~-~~~G~~v~~g~~l~~i~~~ 720 (765)
+..|.|+.+|.|.+++ +.+||.|.+|++|++|...
T Consensus 123 ~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp 158 (409)
T PRK09783 123 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 158 (409)
T ss_pred eEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence 4579999999999998 8999999999999999854
No 314
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=81.99 E-value=1.4 Score=39.72 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=49.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
-+++||+|+|..|.+-++.+.+.|-++.++..+. ..++..+.+.. ..|. +. -.+.+.|+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~~~~~i~~~~----~~~~--~~------l~~~~lV~~a 67 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EFSEGLIQLIR----REFE--ED------LDGADLVFAA 67 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HHHHTSCEEEE----SS-G--GG------CTTESEEEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hhhhhHHHHHh----hhHH--HH------HhhheEEEec
Confidence 4799999999999999999999999877776542 00011111111 1111 00 1346778766
Q ss_pred CCcccccHHHHHHHHHCCCcEE
Q 041518 117 YGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
.+--..+..+...+++.|+++-
T Consensus 68 t~d~~~n~~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 68 TDDPELNEAIYADARARGILVN 89 (103)
T ss_dssp SS-HHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHhhCCEEEE
Confidence 5443444566777777887654
No 315
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=81.69 E-value=2.5 Score=47.76 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=33.1
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEEeCcceeee----ecceeee
Q 041518 693 TTGVVHGLQVTAGQQVSDGSVLFRLQAVHIQLAV----HGFVVQF 733 (765)
Q Consensus 693 ~~G~v~~~~~~~G~~v~~g~~l~~i~~~~~~~~~----~~~~~~~ 733 (765)
..|+|.++++++||.|+.|++|++|+.+-++..+ .|.+..+
T Consensus 15 ~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i 59 (404)
T COG0508 15 TEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKI 59 (404)
T ss_pred ceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEE
Confidence 3699999999999999999999999987655544 5555554
No 316
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=81.66 E-value=45 Score=39.07 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEe
Q 041518 284 HDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEM 325 (765)
Q Consensus 284 ~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEi 325 (765)
++..++|.+.+.++-+.+| .+..|||-+. +|++|++-.
T Consensus 257 p~~~~eL~~~a~~LE~~fg--~pqDIEfai~--~g~L~iLQa 294 (530)
T PRK05878 257 PAVYDELMAAARTLERLGR--DVQDIEFTVE--SGKLWLLQT 294 (530)
T ss_pred HHHHHHHHHHHHHHHHHcC--CceeEEEEEE--CCEEEEEEe
Confidence 4677888898888887766 6899999996 789999874
No 317
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=81.51 E-value=9.8 Score=37.20 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=48.1
Q ss_pred EEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCC
Q 041518 40 ILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYG 118 (765)
Q Consensus 40 ILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g 118 (765)
|||+|+ |.++..+++.+.+.|++++++..++..... ...-.+.. -++.|.+.+.++++ ++|+|+-..+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~------~d~~d~~~~~~al~--~~d~vi~~~~ 69 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQ------GDLFDPDSVKAALK--GADAVIHAAG 69 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEE------SCTTCHHHHHHHHT--TSSEEEECCH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccce------eeehhhhhhhhhhh--hcchhhhhhh
Confidence 799995 999999999999999999998765442111 11111211 24578888888775 8999986654
No 318
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.50 E-value=2 Score=51.37 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=67.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
.++++|+|.|..+..+++.+++.|+++++++.|++.-....+. +..+..+. -.+ ..+++.+.-.++|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g~~v~~GD------at~-~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-GMKVFYGD------ATR-MDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-CCeEEEEe------CCC-HHHHHhcCCCcCCEEEEE
Confidence 4799999999999999999999999999998776643222222 22232222 123 345555555677888866
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCC
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLV 166 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp 166 (765)
.+....|........+. .|+...+.+.+|.... ..+.+.|+...
T Consensus 472 ~~d~~~n~~i~~~ar~~-----~p~~~iiaRa~d~~~~-~~L~~~Gad~v 515 (621)
T PRK03562 472 IDDPQTSLQLVELVKEH-----FPHLQIIARARDVDHY-IRLRQAGVEKP 515 (621)
T ss_pred eCCHHHHHHHHHHHHHh-----CCCCeEEEEECCHHHH-HHHHHCCCCEE
Confidence 54322222333333332 1233334455565443 34456666643
No 319
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=81.40 E-value=3.7 Score=48.98 Aligned_cols=130 Identities=26% Similarity=0.370 Sum_probs=103.6
Q ss_pred CceEEEEEC-CEEEEEEEEEeec--ccce-EEEEEeCCeeEEEEEecCCCCCCccccccccccccCCCCCCcccCCCcce
Q 041518 584 EHKFRVEFD-VVSMDVHLAVYNK--GRIK-HIHAWHGLHHHHFKQKLGLELPDEDETQHKTSFETATGPPGSVLSPMAGL 659 (765)
Q Consensus 584 ~~~l~~~~~-G~~~~~~~~~~~~--~~~~-~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~ 659 (765)
+.++.++++ |++.-+.+...+. ..+. .++...+|+.+.+.+.+....+ ....+.+++..++..|-|||||+
T Consensus 1015 gEe~~v~ie~GktLii~l~aige~d~~G~r~v~felNGq~R~i~v~Drs~~~-----~~~~r~KAd~~Np~higApmpG~ 1089 (1149)
T COG1038 1015 GEEIEVEIEKGKTLIIKLQAIGEPDEKGMRTVYFELNGQPREIKVKDRSVGS-----SVVARRKADPGNPGHIGAPMPGV 1089 (1149)
T ss_pred CceEEEEecCCcEEEEEecccCCCCcCCcEEEEEEeCCceeeeeeccccccc-----ccccccccCCCCccccCCCCCCc
Confidence 344555553 7776666544431 1111 2344478999999988876541 12234567788899999999999
Q ss_pred EEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEE
Q 041518 660 VVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 718 (765)
Q Consensus 660 v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 718 (765)
|+++.|+.||.|++||+|+++||||||..|.||.+|+|.+++|+.||+|..|++|+.++
T Consensus 1090 Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1090 VVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred eEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999875
No 320
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=81.39 E-value=2.3 Score=43.15 Aligned_cols=112 Identities=12% Similarity=0.200 Sum_probs=60.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
-|+++|+|-|.++..+++.+.+.|.++++.+.+.+. ...+.+.. +. .+.+.+.+.. ..+|.++|.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~---~~~~~~~~---g~-----~~v~~~~l~~----~~~Dv~vp~ 92 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEA---VARAAELF---GA-----TVVAPEEIYS----VDADVFAPC 92 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHH---HHHHHHHc---CC-----EEEcchhhcc----ccCCEEEec
Confidence 369999999999999999999999998865433221 11111210 10 0111122222 368999987
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCcc
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGY 169 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~ 169 (765)
.. ++......+.+.+...+.-... .-+.| ....++|++.||...|-+
T Consensus 93 A~---~~~I~~~~~~~l~~~~v~~~AN--~~~~~-~~~~~~L~~~Gi~~~Pd~ 139 (200)
T cd01075 93 AL---GGVINDDTIPQLKAKAIAGAAN--NQLAD-PRHGQMLHERGILYAPDY 139 (200)
T ss_pred cc---ccccCHHHHHHcCCCEEEECCc--CccCC-HhHHHHHHHCCCEEeCce
Confidence 42 1222223344444444311110 11122 445677788888877743
No 321
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=80.47 E-value=1.7 Score=49.12 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=32.2
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecc
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMK 684 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamK 684 (765)
..|.||..|+|.++++++||.|..|++|+.||...
T Consensus 46 ~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 46 LEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred eEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 56899999999999999999999999999998643
No 322
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=80.38 E-value=3.9 Score=36.01 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=38.7
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeCc
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAVH 721 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~~ 721 (765)
..|.||++|+|+.+.-.. ...-.++|+--.--..+... +..+.++.||.|++|+.|..+....
T Consensus 14 ~~V~A~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~~----l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 14 TPVYAPADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYGH----LDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp -EEEESSSEEEEEEEEET-----TTEEEEEEEETTSEEEEEEE----ESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred CEEEeCccEEEEEEEecc-----CCccEEEEEeCCcCCEEEec----cccccceecccccCCCEEEecCCCC
Confidence 469999999998775522 22334444432212222222 4456689999999999999998543
No 323
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=80.35 E-value=1.8 Score=34.73 Aligned_cols=31 Identities=39% Similarity=0.607 Sum_probs=28.0
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVL 680 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ 680 (765)
..+.+|..|++.++++++|+.|..|++|+.+
T Consensus 44 ~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 44 VEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3589999999999999999999999999864
No 324
>PRK05693 short chain dehydrogenase; Provisional
Probab=80.27 E-value=5.6 Score=41.88 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=28.4
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
||++||.| .|.++..+++.+.+.|++++++..+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 58999999 4789999999999999998887644
No 325
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=80.08 E-value=1.5 Score=47.56 Aligned_cols=70 Identities=33% Similarity=0.535 Sum_probs=57.6
Q ss_pred cccCCCcceEEEEEcCCCCeecCCCeEEEEEe-c-------------------------------------c--------
Q 041518 651 SVLSPMAGLVVKVLANDGTKVEEGQPILVLEA-M-------------------------------------K-------- 684 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~ea-m-------------------------------------K-------- 684 (765)
.+.++..|.|.+++|++||.|++||+|+.++. - +
T Consensus 68 ~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 147 (372)
T COG0845 68 EVLARVAGIVAEILVKEGDRVKKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAEL 147 (372)
T ss_pred eEecccccEEEEEEccCCCeecCCCEEEEECCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcccHHHH
Confidence 46777999999999999999999999999984 0 1
Q ss_pred ----------------------------eEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 685 ----------------------------MEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 685 ----------------------------m~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
....++||.+|++....++.|+.+..++.+..+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~~g~~~~~~~~~g~~v~~~~~~~~~~~~ 211 (372)
T COG0845 148 DAAQALLRAAEALVEAAQAALASAKLNLEYTRITAPISGVIGARLVRVGQLVSAGQALATIADL 211 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEeCCCCceEeeeEcCcCceEcCCCcceEEEEe
Confidence 112399999999999999999999999666655443
No 326
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=80.02 E-value=9.9 Score=43.57 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=58.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH---CCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 37 IEKILIANRGEIAYRIMRTAKR---LGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~---~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
.+++||+|.|+.+..+++.+++ .|++++.+..+.... . ..... +. -+-+.+.+.+.++++++|.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~-~-~~~~g--vp--------Vlg~~~dl~~~i~~~~vd~V 195 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDA-R-TGVRG--VP--------VLGKLDDLEELIREGEVDEV 195 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCcc-c-cccCC--CC--------ccCCHHHHHHHHHhcCCCEE
Confidence 4789999999999999999875 589988876432221 1 11111 10 13456789999999999998
Q ss_pred EeCCCcccc--cHHHHHHHHHCCCcEE
Q 041518 114 HPGYGFLSE--SADFAQLCGDNGLTFI 138 (765)
Q Consensus 114 ~pg~g~lsE--~~~~a~~~~~~Gl~~~ 138 (765)
+........ ...+.+.|+..|+.+.
T Consensus 196 iIA~p~~~~~~~~~ll~~~~~~gv~V~ 222 (451)
T TIGR03023 196 YIALPLAAEDRILELLDALEDLTVDVR 222 (451)
T ss_pred EEeeCcccHHHHHHHHHHHHhcCCEEE
Confidence 866432221 1344556677776543
No 327
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=79.96 E-value=7.5 Score=42.63 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=45.8
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCccc---cc---ccE-EEEcCCCCcCcCCCCHHHHHHHHHHh
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHV---KS---ADE-AIRIGPPPARLSYLNGSSIVDAAIRT 108 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~---~~---aD~-~~~i~~~~~~~syld~~~Il~~a~~~ 108 (765)
|++|||+| .|.++..+++.+.+.|++++++........... .. .+. .+. -+..|.+.+.++.++.
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~d~~~~~~~~~~~ 73 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEK-------VDICDRAELARVFTEH 73 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEE-------CCCcChHHHHHHHhhc
Confidence 57999999 588999999999999988654432211100000 00 011 111 1346677777777777
Q ss_pred CCCEEEeCC
Q 041518 109 GAQAIHPGY 117 (765)
Q Consensus 109 ~~DaV~pg~ 117 (765)
++|.|+-.-
T Consensus 74 ~~D~Vih~A 82 (355)
T PRK10217 74 QPDCVMHLA 82 (355)
T ss_pred CCCEEEECC
Confidence 899887553
No 328
>PRK05993 short chain dehydrogenase; Provisional
Probab=79.88 E-value=7 Score=41.32 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
|+|++||.|+ |.++..+++.+.+.|++++++..+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~ 38 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKE 38 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5689999995 7899999999999999988876543
No 329
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=79.80 E-value=1.7 Score=47.87 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=26.4
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEE
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLE 681 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~e 681 (765)
..|.+..+|.|++|+|+..+.|++||+|+.|+
T Consensus 54 v~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD 85 (352)
T COG1566 54 VPIAPQVSGRVTEVNVKDNQLVKKGDVLFRID 85 (352)
T ss_pred EEEcCcCceEEEEEEecCCCEecCCCeEEEEC
Confidence 66777888888888888888888888888775
No 330
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=79.60 E-value=4.2 Score=36.96 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=54.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHC--CCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 39 KILIANRGEIAYRIMRTAKRL--GIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~--Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
||+|+|.|.++...++.+++. +.+++++.. .++.. ....+.. +.+ ..|.+.+. ++...++|+|+..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d-~~~~~-~~~~~~~-~~~------~~~~~~~~---ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCD-PDPER-AEAFAEK-YGI------PVYTDLEE---LLADEDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEEC-SSHHH-HHHHHHH-TTS------EEESSHHH---HHHHTTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEe-CCHHH-HHHHHHH-hcc------cchhHHHH---HHHhhcCCEEEEe
Confidence 799999999999888888887 677777653 33211 1111111 100 13455444 4455689998866
Q ss_pred CCcccccHHHHHHHHHCCCcEE
Q 041518 117 YGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
... ..+..++..+.+.|++++
T Consensus 70 tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 70 TPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp SSG-GGHHHHHHHHHHTTSEEE
T ss_pred cCC-cchHHHHHHHHHcCCEEE
Confidence 432 235677788888898776
No 331
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=79.59 E-value=22 Score=36.96 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=28.8
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
+++|||+| .|.++..+++.+.+.|++++++..+.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 47999999 58999999999999999988775443
No 332
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.37 E-value=2.1 Score=51.00 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
..+|+|+|.|..+..+++.+++.|+++++++.|++.-....+ .+..+..+.. .+ +.+++.+.-.++|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDa------t~-~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDA------TQ-LELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeC------CC-HHHHHhcCCccCCEEEEE
Confidence 468999999999999999999999999999887664322222 2322323321 22 455555655677777766
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCC
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPL 165 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpv 165 (765)
.+...+|......+.+. .|+...+.+++|....+ .++++|...
T Consensus 472 ~~d~~~n~~i~~~~r~~-----~p~~~IiaRa~~~~~~~-~L~~~Ga~~ 514 (601)
T PRK03659 472 CNEPEDTMKIVELCQQH-----FPHLHILARARGRVEAH-ELLQAGVTQ 514 (601)
T ss_pred eCCHHHHHHHHHHHHHH-----CCCCeEEEEeCCHHHHH-HHHhCCCCE
Confidence 54322222223333332 12333344555554443 445566653
No 333
>PLN02778 3,5-epimerase/4-reductase
Probab=79.31 E-value=8.4 Score=41.51 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=40.3
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
+.+||||+| .|.++..+++.+.+.|++++.... +..+.+.+....+..++|.|+
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~-------------------------~~~~~~~v~~~l~~~~~D~Vi 62 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSG-------------------------RLENRASLEADIDAVKPTHVF 62 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecC-------------------------ccCCHHHHHHHHHhcCCCEEE
Confidence 446899999 589999999999999998753210 013445566666667899887
Q ss_pred eC
Q 041518 115 PG 116 (765)
Q Consensus 115 pg 116 (765)
-.
T Consensus 63 H~ 64 (298)
T PLN02778 63 NA 64 (298)
T ss_pred EC
Confidence 44
No 334
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=78.91 E-value=12 Score=42.89 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=59.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
-||+.|.+.+..+..+++.+.++|++++++.+....... ..+.+..+. ..|...+.+.+++.++|.++.+
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~-~~~~~~~~~---------~~D~~~l~~~i~~~~~dliig~ 380 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLL-QKLPVETVV---------IGDLEDLEDLACAAGADLLITN 380 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHH-HhCCcCcEE---------eCCHHHHHHHHhhcCCCEEEEC
Confidence 378999998888899999999999999988876443211 112222221 1466788889999999999855
Q ss_pred CCcccccHHHHHHHHHCCCcEE
Q 041518 117 YGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
.- . ..+..++|+|++
T Consensus 381 s~-----~--k~~A~~l~ip~i 395 (432)
T TIGR01285 381 SH-----G--RALAQRLALPLV 395 (432)
T ss_pred cc-----h--HHHHHHcCCCEE
Confidence 21 1 345567888877
No 335
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=78.18 E-value=15 Score=42.47 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=58.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH---CCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 37 IEKILIANRGEIAYRIMRTAKR---LGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~---~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
.+++||+|.|+.+..+++.+++ +|++++++..+.... . ..+ .-+-+.+.+.+.++++++|-|
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~--g-------~~V------pvlG~~~dL~~~v~~~~IdeV 207 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKPG--G-------VSN------DWAGNLQQLVEDAKAGKIHNV 207 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCccc--c-------CCC------CcCCCHHHHHHHHHhCCCCEE
Confidence 4689999999999999999876 489998876432210 0 001 013567889999999999998
Q ss_pred EeCCCccccc--HHHHHHHHHCCCcEE
Q 041518 114 HPGYGFLSES--ADFAQLCGDNGLTFI 138 (765)
Q Consensus 114 ~pg~g~lsE~--~~~a~~~~~~Gl~~~ 138 (765)
+......++. ..+.+.|++.++.+.
T Consensus 208 iIAip~~~~~~l~ell~~~~~~~v~V~ 234 (463)
T PRK10124 208 YIAMSMCDGARVKKLVRQLADTTCSVL 234 (463)
T ss_pred EEeCCCcchHHHHHHHHHHHHcCCeEE
Confidence 8764333221 344566777787543
No 336
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.04 E-value=5 Score=45.77 Aligned_cols=36 Identities=17% Similarity=0.442 Sum_probs=32.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCC
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDAD 71 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d 71 (765)
.+++++|+|.|..+..+++.+.+.|+.++++..+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 368999999999999999999999999999876654
No 337
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=77.99 E-value=14 Score=39.48 Aligned_cols=116 Identities=17% Similarity=0.084 Sum_probs=68.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHH--CCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 37 IEKILIANRGEIAYRIMRTAKR--LGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~--~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
..||.|+|.|.++..+++.+.+ .|+++++++.. +.. ....+++. + +. ...|.+.+.++ ..+|+|+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr-~~~-~a~~~a~~-~--g~---~~~~~~~eell-----~~~D~Vv 72 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR-DPQ-RHADFIWG-L--RR---PPPVVPLDQLA-----THADIVV 72 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC-CHH-HHHHHHHh-c--CC---CcccCCHHHHh-----cCCCEEE
Confidence 3589999999999999999887 38888777542 321 11222222 1 10 01245666664 2589998
Q ss_pred eCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCC--CCCcc
Q 041518 115 PGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVP--LVPGY 169 (765)
Q Consensus 115 pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvp--vp~~~ 169 (765)
..... .-...+...+.+.|..++.-+..++. +-..+.+.+++.|.+ +|+++
T Consensus 73 i~tp~-~~h~e~~~~aL~aGk~Vi~~s~gal~---~~~~L~~~A~~~g~~l~v~sGa 125 (271)
T PRK13302 73 EAAPA-SVLRAIVEPVLAAGKKAIVLSVGALL---RNEDLIDLARQNGGQIIVPTGA 125 (271)
T ss_pred ECCCc-HHHHHHHHHHHHcCCcEEEecchhHH---hHHHHHHHHHHcCCEEEEcchH
Confidence 76432 11245555666778877743433332 335666777777776 44444
No 338
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=77.97 E-value=13 Score=42.49 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=57.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcc-------cccccEEEEcCCCCcCcCCCCHHHHHHHHHHhC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLH-------VKSADEAIRIGPPPARLSYLNGSSIVDAAIRTG 109 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~-------~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~ 109 (765)
-||+.|+|....+..+.+.+.++|++++++.++....... ....+..+.+. ..|...+.+.+++.+
T Consensus 300 gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~-------~~d~~e~~~~l~~~~ 372 (429)
T cd03466 300 GRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILD-------GADFFDIESYAKELK 372 (429)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEe-------CCCHHHHHHHHHhcC
Confidence 4799999988889999999999999987776543221111 11123333222 246678888888888
Q ss_pred CCEEEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 110 AQAIHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 110 ~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
+|.++.+. .-.....+.|+|++
T Consensus 373 ~dliiG~s-------~~~~~a~~~~ip~~ 394 (429)
T cd03466 373 IDVLIGNS-------YGRRIAEKLGIPLI 394 (429)
T ss_pred CCEEEECc-------hhHHHHHHcCCCEE
Confidence 88888442 11345566777775
No 339
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=77.61 E-value=2.4 Score=47.90 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=31.7
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEec
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM 683 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam 683 (765)
..|.||..|+|.++++++|+.|+.|++|+.|+..
T Consensus 44 ~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 44 LEVPSPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 4589999999999999999999999999999864
No 340
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=77.46 E-value=87 Score=32.27 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=92.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEE-EEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEA-IRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~-~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
||.+....+|--..-.+-.+-+.|++++.+.+-...+. |.+ ++ ..|.+.+...++..++..+.-
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~------dS~m~H---------~~n~~~~~~~Ae~~gi~l~~~ 65 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENG------DSYMFH---------TPNLELAELQAEAMGIPLVTF 65 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCC------Ceeeee---------ccchHHHHHHHHhcCCceEEE
Confidence 45666666665556667777889999877654322211 111 11 145566777777788876654
Q ss_pred CCCc--ccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEe
Q 041518 116 GYGF--LSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIK 193 (765)
Q Consensus 116 g~g~--lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVK 193 (765)
.... --|...+.+++...++..+ ...++..--.|..+.++++++|+-+-...-. .|..++....-..||-++|=
T Consensus 66 ~~~g~~e~eve~L~~~l~~l~~d~i--v~GaI~s~yqk~rve~lc~~lGl~~~~PLWg--~d~~ell~e~~~~Gf~~~Iv 141 (223)
T COG2102 66 DTSGEEEREVEELKEALRRLKVDGI--VAGAIASEYQKERVERLCEELGLKVYAPLWG--RDPEELLEEMVEAGFEAIIV 141 (223)
T ss_pred ecCccchhhHHHHHHHHHhCcccEE--EEchhhhHHHHHHHHHHHHHhCCEEeecccC--CCHHHHHHHHHHcCCeEEEE
Confidence 4322 1123566777887776555 6667778888999999999999875432223 37888888777889987665
Q ss_pred ecCCCC
Q 041518 194 PTHGGG 199 (765)
Q Consensus 194 P~~g~G 199 (765)
.++..|
T Consensus 142 ~Vsa~g 147 (223)
T COG2102 142 AVSAEG 147 (223)
T ss_pred EEeccC
Confidence 554443
No 341
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=77.18 E-value=10 Score=41.78 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=61.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEE-EEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTV-AVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vv-av~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
..++|||+|.|..+..+++.+-++|+..+ +++.|.-.. ..+.-..+.-.. .....-.-.+.+.+.+++.+.+.-+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~---sNL~RQ~l~~~~-d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEW---SNLQRQQLYTEE-DAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccc---cccCccccccHH-HccCCccHHHHHHHHHHHHCCCcEE
Confidence 45799999999999999999999999544 454332110 001101110000 0000001223445555666655433
Q ss_pred eCC-CcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCC
Q 041518 115 PGY-GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVP 167 (765)
Q Consensus 115 pg~-g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~ 167 (765)
-.+ ..+. ...+.+++....+.+.+.+... .+....+++.+.|+|..-
T Consensus 99 ~~~~~~~~-~~~~~~~~~~~DlVid~~D~~~-----~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 99 VPVVTDVT-VEELEELVKEVDLIIDATDNFD-----TRLLINDLSQKYNIPWIY 146 (338)
T ss_pred EEEeccCC-HHHHHHHhcCCCEEEEcCCCHH-----HHHHHHHHHHHcCCCEEE
Confidence 222 1122 1233445555666555433222 234455677788887643
No 342
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=76.77 E-value=12 Score=36.21 Aligned_cols=88 Identities=11% Similarity=0.176 Sum_probs=48.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHH---CCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 38 EKILIANRGEIAYRIMRTAKR---LGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~---~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
++.+++|.+..+..+.+.+++ .|++++++..+... .......+..+ + -+.+.+.+.++++++|-|+
T Consensus 78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~-~~~~~~~~~~~-l---------g~~~~l~~~~~~~~id~v~ 146 (175)
T PF13727_consen 78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDPS-DRGPEIDGVPV-L---------GDLDDLPELVREHDIDEVI 146 (175)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-GG-GTT-EETTEEE-E-----------GGGHHHHHHHHT--EEE
T ss_pred cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCchh-hccCcccCcee-E---------cCHHHHHHHHHhCCCCEEE
Confidence 345777777777777777665 79998887654332 12222222222 2 3457899999999999998
Q ss_pred eCCCccccc---HHHHHHHHHCCCcE
Q 041518 115 PGYGFLSES---ADFAQLCGDNGLTF 137 (765)
Q Consensus 115 pg~g~lsE~---~~~a~~~~~~Gl~~ 137 (765)
...... +. ..+.+.|++.|+.+
T Consensus 147 ial~~~-~~~~i~~ii~~~~~~~v~v 171 (175)
T PF13727_consen 147 IALPWS-EEEQIKRIIEELENHGVRV 171 (175)
T ss_dssp E--TTS--HHHHHHHHHHHHTTT-EE
T ss_pred EEcCcc-CHHHHHHHHHHHHhCCCEE
Confidence 775332 22 34567788888764
No 343
>PRK08219 short chain dehydrogenase; Provisional
Probab=76.77 E-value=4.8 Score=40.72 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=45.8
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCccc-cccc-EEEEcCCCCcCcCCCCHHHHHHHHHHh-CCC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHV-KSAD-EAIRIGPPPARLSYLNGSSIVDAAIRT-GAQ 111 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~-~~aD-~~~~i~~~~~~~syld~~~Il~~a~~~-~~D 111 (765)
|||++||+| .|.++..+++.+.+. ++++++..+........ ...+ +.+. -+..|.+.+.+++... ++|
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-------~D~~~~~~~~~~~~~~~~id 73 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFP-------VDLTDPEAIAAAVEQLGRLD 73 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEe-------cCCCCHHHHHHHHHhcCCCC
Confidence 468999999 578899999988888 88888765432210000 0111 1121 2345667777766654 688
Q ss_pred EEEeCCC
Q 041518 112 AIHPGYG 118 (765)
Q Consensus 112 aV~pg~g 118 (765)
+|+-.-+
T Consensus 74 ~vi~~ag 80 (227)
T PRK08219 74 VLVHNAG 80 (227)
T ss_pred EEEECCC
Confidence 8885543
No 344
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.69 E-value=4.5 Score=41.36 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=27.7
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEec
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYS 68 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s 68 (765)
++|+|||+| .|.++..+++.+.+.|++++++..
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 468999999 578999999999999999766543
No 345
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.65 E-value=9.1 Score=39.28 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=29.1
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
+.|++||+| +|.++..+++.+.+.|++++++..+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 457999999 5789999999999999998887654
No 346
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.65 E-value=25 Score=36.48 Aligned_cols=164 Identities=15% Similarity=0.198 Sum_probs=92.5
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 38 EKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 38 kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
++|||.| .|.++..+++.+.+.|++++++..+++...... ..-.+. ..++.+.+.+...+ .+.+.++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--~~v~~~------~~d~~~~~~l~~a~--~G~~~~~~i 70 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--GGVEVV------LGDLRDPKSLVAGA--KGVDGVLLI 70 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--CCcEEE------EeccCCHhHHHHHh--ccccEEEEE
Confidence 3799999 688999999999999999999887765533322 111122 23577878887777 456654433
Q ss_pred CCcc-------c-ccHHHHHHHHHCC--Cc------EECCc-HHHHHHhcCHHHHHHHHHHCCCCCC----CccccCCCC
Q 041518 117 YGFL-------S-ESADFAQLCGDNG--LT------FIGPP-VSAIRDMGDKSASKRIMGAAGVPLV----PGYHGNEQD 175 (765)
Q Consensus 117 ~g~l-------s-E~~~~a~~~~~~G--l~------~~Gp~-~eai~~~~DK~~~r~~l~~~Gvpvp----~~~~~~~~s 175 (765)
.+.. . +...+....++.+ .. .++.. ........+|....+.+...|++.. +++... .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~t~lr~~~~~~~--~ 148 (275)
T COG0702 71 SGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPYTTLRRAAFYLG--A 148 (275)
T ss_pred ecccccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCCeEEEecCeeeec--c
Confidence 2211 1 1112233444433 22 23433 2456678889999999999999832 222211 1
Q ss_pred HHHHHHHHHHhCCcEEEeecCCCCCccEEEECChhHHHHHHHHH
Q 041518 176 IDLMKSEAAKIGYPILIKPTHGGGGKGMRIVQSPNDFVDSFLGA 219 (765)
Q Consensus 176 ~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~ 219 (765)
.......+..-+.|++..+.. ..-.-..+++..++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~d~a~~~~~~ 186 (275)
T COG0702 149 GAAFIEAAEAAGLPVIPRGIG------RLSPIAVDDVAEALAAA 186 (275)
T ss_pred chhHHHHHHhhCCceecCCCC------ceeeeEHHHHHHHHHHH
Confidence 222233444555566555433 12222345555555444
No 347
>PRK08267 short chain dehydrogenase; Provisional
Probab=76.55 E-value=8.4 Score=40.10 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=29.0
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
||++||+| +|.++..+++.+.+.|+++++++.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 35 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINE 35 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 58999999 57899999999999999988876543
No 348
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=76.51 E-value=2.4 Score=35.94 Aligned_cols=29 Identities=28% Similarity=0.607 Sum_probs=20.1
Q ss_pred cCCCcceEEEEEcCCCCeecCCCeEEEEEec
Q 041518 653 LSPMAGLVVKVLANDGTKVEEGQPILVLEAM 683 (765)
Q Consensus 653 ~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam 683 (765)
.-|..|. .++++.||.|++||+|++|=+.
T Consensus 28 ID~~vGi--~l~~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 28 IDPAVGI--ELHKKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp --TT-EE--EESS-TTSEEBTTSEEEEEEES
T ss_pred cCcCcCe--EecCcCcCEECCCCeEEEEEcC
Confidence 3445554 5889999999999999998543
No 349
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.46 E-value=7.6 Score=39.74 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=27.5
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEE
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAV 66 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav 66 (765)
|+|++||+|+ |.++..+++.+.+.|++++++
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 5689999994 789999999999999998887
No 350
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=76.20 E-value=6.8 Score=44.57 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCC----CCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDA----DRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~----d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
-||+.|.+.+..+..++..++++|++++++.+.- +.......+.+..+.+.. .|...+.+++++.++|.
T Consensus 300 Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~~-------~d~~e~~~~i~~~~pDl 372 (421)
T cd01976 300 GKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYDD-------VTHYELEEFVKRLKPDL 372 (421)
T ss_pred CCEEEEECCCCcHHHHHHHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEEcC-------CCHHHHHHHHHHhCCCE
Confidence 4799999877666677789999999999875421 101111122233333322 46788999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
++.+.- + .....++|+|+.
T Consensus 373 iig~~~---~----~~~a~k~giP~~ 391 (421)
T cd01976 373 IGSGIK---E----KYVFQKMGIPFR 391 (421)
T ss_pred EEecCc---c----hhhhhhcCCCeE
Confidence 996531 1 244577899874
No 351
>PRK08177 short chain dehydrogenase; Provisional
Probab=75.99 E-value=8.1 Score=39.30 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=29.6
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDAD 71 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d 71 (765)
||++||.| .|.++..+++.+.+.|+++++++.++.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 47899999 578899999999999999888876544
No 352
>PRK08017 oxidoreductase; Provisional
Probab=75.76 E-value=12 Score=38.78 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
|+|++||.|+ |.++..+++.+.+.|++++++..+.
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4578999996 8999999999999999988876544
No 353
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=75.53 E-value=4.9 Score=41.05 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=42.1
Q ss_pred CcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeE
Q 041518 656 MAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVL 714 (765)
Q Consensus 656 ~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l 714 (765)
+.+.|+. .+++|+.+++||.+..++=- ....+.-|.+ .++.+++||.|..|+.+
T Consensus 148 ~~r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getv 201 (206)
T PRK05305 148 IARRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETV 201 (206)
T ss_pred EccEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEE
Confidence 3455544 57999999999999998865 4666777776 26789999999999844
No 354
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=75.44 E-value=7 Score=39.90 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=42.1
Q ss_pred CCCCcccCCCcceEEEEEcCCCCeecCCCeEEEEEec--ceEEEEEcCCCeEEEEEEcCCCCccCC
Q 041518 647 GPPGSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM--KMEHVVKAPTTGVVHGLQVTAGQQVSD 710 (765)
Q Consensus 647 ~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam--Km~~~i~ap~~G~v~~~~~~~G~~v~~ 710 (765)
.++..+.||..|+|..+.--..+ +-..+.+.+.=.| ...|.++||.+|+|.++...+|.....
T Consensus 51 ~~~~~i~SPaDG~v~~i~~v~d~-~~~~~~~~i~i~lsp~d~H~~~aP~~G~V~~~~~~~G~~~~~ 115 (206)
T PRK05305 51 TDDGLVVSPADGKVVVIEEVVPP-YGDEPRLRISIFMSVFNVHVNRAPVSGTVTKVEYRPGKFLNA 115 (206)
T ss_pred CCCCEEEeCCCcEEEEEEEECCC-ccCCceEEEEEEECcccCCEEEeCccCEEEEEEEECCeEEec
Confidence 45677999999999988543322 2211222221122 345889999999999999999985554
No 355
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=75.31 E-value=13 Score=40.92 Aligned_cols=76 Identities=11% Similarity=-0.031 Sum_probs=49.7
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCccc---ccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHV---KSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~---~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
.|+|||.| .|.++..+++.+.+.|++++++..+........ ...+....+ .-+..+.+.+.++.++.++|.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDH-----FGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEE-----EccCCCHHHHHHHHhhcCCCE
Confidence 47999999 488999999999999999888764433211110 001111111 124467788888888888998
Q ss_pred EEeCC
Q 041518 113 IHPGY 117 (765)
Q Consensus 113 V~pg~ 117 (765)
|+-.-
T Consensus 79 vih~A 83 (349)
T TIGR02622 79 VFHLA 83 (349)
T ss_pred EEECC
Confidence 87553
No 356
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=75.28 E-value=13 Score=42.84 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=58.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCC----cccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDS----LHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~----~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
-||+.|.+.+.....+++.++++|++++.+.+...... ....+.+..+.+.. .|.+.+.+.+++.++|.
T Consensus 326 Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~~-------~d~~e~~~~i~~~~pDl 398 (456)
T TIGR01283 326 GKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLDD-------ANPRELLKLLLEYKADL 398 (456)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEeC-------CCHHHHHHHHhhcCCCE
Confidence 37888888778888899999999999988754322110 00112233333322 47788999999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
++.+. .| .....+.|+|++
T Consensus 399 ~ig~~---~~----~~~a~k~giP~i 417 (456)
T TIGR01283 399 LIAGG---KE----RYTALKLGIPFC 417 (456)
T ss_pred EEEcc---ch----HHHHHhcCCCEE
Confidence 98542 11 233457899887
No 357
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=75.28 E-value=6.1 Score=42.79 Aligned_cols=46 Identities=28% Similarity=0.326 Sum_probs=37.2
Q ss_pred CCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEe
Q 041518 673 EGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQA 719 (765)
Q Consensus 673 ~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~ 719 (765)
.-.....+++ .-...+.++..|.|.++++++||.|..|++|+.+++
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 3344455555 333478888999999999999999999999999998
No 358
>PLN00198 anthocyanidin reductase; Provisional
Probab=75.12 E-value=13 Score=40.47 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=29.4
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
++++|||.| .|.++..+++.+.+.|++++++..+.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCC
Confidence 467999999 67899999999999999987765443
No 359
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=74.98 E-value=10 Score=38.72 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=28.8
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
++++||.| .|.++..+++.+.+.|++++++..++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 47999999 57899999999999999987776543
No 360
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=74.85 E-value=5.8 Score=42.93 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=51.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcc---------cccccEEE--EcCCCCcCcCCCCHHHHHHHHH
Q 041518 38 EKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLH---------VKSADEAI--RIGPPPARLSYLNGSSIVDAAI 106 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~---------~~~aD~~~--~i~~~~~~~syld~~~Il~~a~ 106 (765)
.||+.+|..+.++.+++++-+.|+++++|++.+|..... .++|-+.- ..-| ++ ++.+.+++..+
T Consensus 2 mkivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP----~~-l~~~e~~~~l~ 76 (307)
T COG0223 2 MRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQP----EK-LNDPEFLEELA 76 (307)
T ss_pred cEEEEEcCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceecc----cc-CCcHHHHHHHh
Confidence 599999999999999999999999999999988875332 12222210 0111 12 22236777777
Q ss_pred HhCCCEEEeC-CC
Q 041518 107 RTGAQAIHPG-YG 118 (765)
Q Consensus 107 ~~~~DaV~pg-~g 118 (765)
+.++|.++.. ||
T Consensus 77 ~l~~D~ivvvayG 89 (307)
T COG0223 77 ALDPDLIVVVAYG 89 (307)
T ss_pred ccCCCEEEEEehh
Confidence 7788877644 44
No 361
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=74.69 E-value=10 Score=38.50 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=51.2
Q ss_pred EEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccc-EEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 40 ILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSAD-EAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 40 ILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD-~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
|||+| .|.++..+++.+.+.|+.++.+..............+ ..+.. ++.+.+.+.++.+..++|.|+-.-
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-------dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIG-------DLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEES-------ETTSHHHHHHHHHHHTESEEEEEB
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEe-------eccccccccccccccCceEEEEee
Confidence 79999 6899999999999999998876654443321111112 22222 457889999999999999988554
Q ss_pred Cc
Q 041518 118 GF 119 (765)
Q Consensus 118 g~ 119 (765)
+.
T Consensus 74 ~~ 75 (236)
T PF01370_consen 74 AF 75 (236)
T ss_dssp SS
T ss_pred cc
Confidence 33
No 362
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=74.64 E-value=22 Score=40.86 Aligned_cols=105 Identities=17% Similarity=0.273 Sum_probs=62.8
Q ss_pred CEEEEEcC----cHHHHHHHHHHHHCCC--eEEEEecCCCCC---Ccccc------cccEEEE-cCCCCcCcCCCCHHHH
Q 041518 38 EKILIANR----GEIAYRIMRTAKRLGI--RTVAVYSDADRD---SLHVK------SADEAIR-IGPPPARLSYLNGSSI 101 (765)
Q Consensus 38 kkILI~g~----G~~a~~iiraar~~Gi--~vvav~s~~d~~---~~~~~------~aD~~~~-i~~~~~~~syld~~~I 101 (765)
++|.|+|. +..+.++++.+++.|| +++.|+...+.- ..+.. -.|-++. +++ .....+
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~-------~~~~~~ 80 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA-------KYVPQV 80 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH-------HHHHHH
Confidence 78999997 4578999999999998 677765433221 01111 1233332 222 233455
Q ss_pred HHHHHHhCCCEEEeC-CCcccc--------cHHHHHHHHHCCCcEECCcHHHHHHhcC
Q 041518 102 VDAAIRTGAQAIHPG-YGFLSE--------SADFAQLCGDNGLTFIGPPVSAIRDMGD 150 (765)
Q Consensus 102 l~~a~~~~~DaV~pg-~g~lsE--------~~~~a~~~~~~Gl~~~Gp~~eai~~~~D 150 (765)
++.|.+.++..++.- .|| +| ...+.+.+++.|+.++||+---+....+
T Consensus 81 l~e~~~~gv~~~vi~s~gf-~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~~ 137 (447)
T TIGR02717 81 VEECGEKGVKGAVVITAGF-KEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHI 137 (447)
T ss_pred HHHHHhcCCCEEEEECCCc-cccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCCC
Confidence 666666788776542 333 22 1355677788999999987654444444
No 363
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=74.58 E-value=16 Score=39.82 Aligned_cols=75 Identities=8% Similarity=-0.119 Sum_probs=48.6
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCC--cccccc-------cEEEEcCCCCcCcCCCCHHHHHHHHH
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDS--LHVKSA-------DEAIRIGPPPARLSYLNGSSIVDAAI 106 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~--~~~~~a-------D~~~~i~~~~~~~syld~~~Il~~a~ 106 (765)
.++|||.|+ |.++..+++.+.+.|++++++........ ....+. +....+ .-+..|.+.+.++.+
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~~~~~~~ 80 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLH-----YGDLSDASSLRRWLD 80 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEE-----EecCCCHHHHHHHHH
Confidence 578999995 88999999999999999988764322100 000111 001011 124567788888888
Q ss_pred HhCCCEEEeC
Q 041518 107 RTGAQAIHPG 116 (765)
Q Consensus 107 ~~~~DaV~pg 116 (765)
..++|.|+-.
T Consensus 81 ~~~~d~Vih~ 90 (340)
T PLN02653 81 DIKPDEVYNL 90 (340)
T ss_pred HcCCCEEEEC
Confidence 7789988744
No 364
>PRK05717 oxidoreductase; Validated
Probab=74.36 E-value=12 Score=38.75 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=31.6
Q ss_pred CCCCCcCC-CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 29 KSDDKQQR-IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 29 ~~~~~~~~-~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
|++|+.+. .|++||+| .|.++..+++.+.+.|.++++++.+
T Consensus 1 ~~~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~ 43 (255)
T PRK05717 1 MSEPNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD 43 (255)
T ss_pred CCCCCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence 34444443 37899999 4789999999999999998887543
No 365
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=74.11 E-value=14 Score=39.63 Aligned_cols=134 Identities=13% Similarity=0.190 Sum_probs=78.1
Q ss_pred EEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCC
Q 041518 40 ILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYG 118 (765)
Q Consensus 40 ILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g 118 (765)
|||+| .|..+..+.+.+. -++++++++... + +..|.+.+.++.++.++|.|+-.-.
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------~-------Ditd~~~v~~~i~~~~PDvVIn~AA 59 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRAE---------------L-------DITDPDAVLEVIRETRPDVVINAAA 59 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CCceEEeccCcc---------------c-------cccChHHHHHHHHhhCCCEEEECcc
Confidence 99999 5788888888887 668887765321 1 2367789999999999999986632
Q ss_pred c----cccc-------------HHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccCCCCHHHHHH
Q 041518 119 F----LSES-------------ADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGNEQDIDLMKS 181 (765)
Q Consensus 119 ~----lsE~-------------~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~ 181 (765)
+ ..|+ ..+|++|.+.|.+++-.|.+-+-- ++| ..--.+...|.|-...+. +.-.-+.
T Consensus 60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFD-G~~---~~~Y~E~D~~~P~nvYG~--sKl~GE~ 133 (281)
T COG1091 60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFD-GEK---GGPYKETDTPNPLNVYGR--SKLAGEE 133 (281)
T ss_pred ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEec-CCC---CCCCCCCCCCCChhhhhH--HHHHHHH
Confidence 2 1122 135677777777766444332211 111 011223344555443333 3222233
Q ss_pred HHHHh-CCcEEEeecCCCCCcc
Q 041518 182 EAAKI-GYPILIKPTHGGGGKG 202 (765)
Q Consensus 182 ~~~~i-g~PvVVKP~~g~Gg~G 202 (765)
+.... ..=+|+.-++-.|..|
T Consensus 134 ~v~~~~~~~~I~Rtswv~g~~g 155 (281)
T COG1091 134 AVRAAGPRHLILRTSWVYGEYG 155 (281)
T ss_pred HHHHhCCCEEEEEeeeeecCCC
Confidence 33333 3347777777666666
No 366
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=73.96 E-value=8.8 Score=43.05 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=60.8
Q ss_pred CCEEEEEcC--cHHHHHHHHHHHHCCCeEEEEecC---------CC-CCCcccccccEEEEcCCCCc---CcCC-CCHHH
Q 041518 37 IEKILIANR--GEIAYRIMRTAKRLGIRTVAVYSD---------AD-RDSLHVKSADEAIRIGPPPA---RLSY-LNGSS 100 (765)
Q Consensus 37 ~kkILI~g~--G~~a~~iiraar~~Gi~vvav~s~---------~d-~~~~~~~~aD~~~~i~~~~~---~~sy-ld~~~ 100 (765)
-+|||+.|. ......+++.+.+.|..+|+-..- .+ ...+...+|+.+...+...+ ..+. .-.+.
T Consensus 233 ~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~dd~c~g~r~~~~~v~e~~dp~~aLA~~Yl~~~~~c~~~~~~~~~~R~~~ 312 (380)
T TIGR02263 233 NCRVIICGMFCEQPPLNLIKSIELSGCYIVDDDFIIVHRFENNDVALAGDPLQNLALAFLHDSISTAAKYDDDEADKGKY 312 (380)
T ss_pred CCEEEEECcCCCCchHHHHHHHHHCCCEEEEecCCccchhhhccCCCCCCHHHHHHHHHhhCCCCCccccCCChhhHHHH
Confidence 479999992 222356788889999998865220 00 22244556776644322110 0111 24678
Q ss_pred HHHHHHHhCCCEEEeCC-----CcccccHHHHHHHHHCCCcEE
Q 041518 101 IVDAAIRTGAQAIHPGY-----GFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 101 Il~~a~~~~~DaV~pg~-----g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
|.+.+++.++|+|+--. -+..|...+.+.+++.|+|++
T Consensus 313 i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L 355 (380)
T TIGR02263 313 LLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQI 355 (380)
T ss_pred HHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEE
Confidence 99999999999998431 112344556666677777766
No 367
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=73.96 E-value=8.3 Score=39.14 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=26.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEE
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAV 66 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav 66 (765)
.-+||||+|.|..+..+++.+.++|+..+.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~l 50 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVI 50 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 3579999999999999999999999954444
No 368
>PRK06182 short chain dehydrogenase; Validated
Probab=73.75 E-value=11 Score=39.47 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=46.3
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHh-----CC
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRT-----GA 110 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~-----~~ 110 (765)
.|++||.|+ |.++..+++.+.+.|++++++..+.+........--..+.. +..|.+.+.+++++. ++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~-------Dv~~~~~~~~~~~~~~~~~~~i 75 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSL-------DVTDEASIKAAVDTIIAEEGRI 75 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEe-------eCCCHHHHHHHHHHHHHhcCCC
Confidence 479999994 78999999999999999888765433210000000112222 234555555555432 78
Q ss_pred CEEEeCCCc
Q 041518 111 QAIHPGYGF 119 (765)
Q Consensus 111 DaV~pg~g~ 119 (765)
|.++...|.
T Consensus 76 d~li~~ag~ 84 (273)
T PRK06182 76 DVLVNNAGY 84 (273)
T ss_pred CEEEECCCc
Confidence 988866543
No 369
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=73.46 E-value=10 Score=40.06 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=44.4
Q ss_pred EEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 39 KILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 39 kILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
||||+|+ |.++..+++.+.+.|++++++... .-+..+.+.+.++++..++|.|+-..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~----------------------~~d~~~~~~~~~~~~~~~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS----------------------QLDLTDPEALERLLRAIRPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc----------------------ccCCCCHHHHHHHHHhCCCCEEEECC
Confidence 5899995 999999999999999998876431 01346778888888877889988553
No 370
>PRK06483 dihydromonapterin reductase; Provisional
Probab=73.34 E-value=16 Score=37.27 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
|.|++||.|+ +.++..+++.+.+.|+++++++.+.
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 5689999995 6799999999999999988876543
No 371
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=73.21 E-value=6.2 Score=39.74 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=41.8
Q ss_pred cceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEE
Q 041518 657 AGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLF 715 (765)
Q Consensus 657 ~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~ 715 (765)
.++|+. .+++|+.|++||.+..++=- ....+..|.+ .++.+++||.|..|+.|+
T Consensus 129 ~~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 129 ARRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ccEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 344433 57899999999999998855 5566777776 267899999999999654
No 372
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.19 E-value=15 Score=42.52 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=55.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcc--ccccc--EEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLH--VKSAD--EAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~--~~~aD--~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
.++|+|+|.|.+++.+++.+++.|+++.+++..+...... ..+.+ -.+..+.. . + ....+|.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~------~--~------~~~~~D~ 81 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPG------P--T------LPEDTDL 81 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCC------c--c------ccCCCCE
Confidence 4699999999999999999999999988765432211111 11111 12222210 0 0 1245898
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEECCcHHH
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFIGPPVSA 144 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~ea 144 (765)
|+.+.|.-..++. ...+.+.|+++++ ..+.
T Consensus 82 Vv~s~Gi~~~~~~-~~~a~~~gi~v~~-~~e~ 111 (480)
T PRK01438 82 VVTSPGWRPDAPL-LAAAADAGIPVWG-EVEL 111 (480)
T ss_pred EEECCCcCCCCHH-HHHHHHCCCeecc-hHHH
Confidence 9887776554444 3445778999874 4443
No 373
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=73.12 E-value=15 Score=40.15 Aligned_cols=74 Identities=8% Similarity=-0.090 Sum_probs=48.1
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCC--cccccc--------cEEEEcCCCCcCcCCCCHHHHHHHHH
Q 041518 38 EKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDS--LHVKSA--------DEAIRIGPPPARLSYLNGSSIVDAAI 106 (765)
Q Consensus 38 kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~--~~~~~a--------D~~~~i~~~~~~~syld~~~Il~~a~ 106 (765)
|+|||.| .|.++..+++.+.+.|++++++........ ....+. .....+ .-+..|.+.+.++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~l~~~~~ 75 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLH-----YGDLTDSSNLRRIID 75 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEE-----EeccCCHHHHHHHHH
Confidence 5899999 488999999999999999988764332100 000000 000001 124567788888888
Q ss_pred HhCCCEEEeC
Q 041518 107 RTGAQAIHPG 116 (765)
Q Consensus 107 ~~~~DaV~pg 116 (765)
..++|.|+-.
T Consensus 76 ~~~~d~ViH~ 85 (343)
T TIGR01472 76 EIKPTEIYNL 85 (343)
T ss_pred hCCCCEEEEC
Confidence 8889988744
No 374
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=73.01 E-value=15 Score=39.39 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=43.9
Q ss_pred EEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 39 KILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 39 kILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
+|||+| .|.++..+++.+.+.|++++++..++.........--+.+. -+..+.+.+.++++ ++|.|+-
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-------~D~~~~~~l~~~~~--~~d~vi~ 70 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVE-------GDLRDPASLRKAVA--GCRALFH 70 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEE-------eeCCCHHHHHHHHh--CCCEEEE
Confidence 799999 58899999999999999998887654331111001111121 24566677766664 5787763
No 375
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.96 E-value=15 Score=42.40 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccE---EEEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADE---AIRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~---~~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
+|||+|+|.|..++.+++.+++.|+.+.+.+.+... ...+.+. .+..+. .+.+.+ .++|.|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~---~~~~l~~~gi~~~~~~-------~~~~~~------~~~d~v 78 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA---RHKLIEVTGVADISTA-------EASDQL------DSFSLV 78 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH---HHHHHHhcCcEEEeCC-------CchhHh------cCCCEE
Confidence 478999999999999999999999976665432211 1112121 111111 111222 357888
Q ss_pred EeCCCcccccHHHHHHHHHCCCcEEC
Q 041518 114 HPGYGFLSESADFAQLCGDNGLTFIG 139 (765)
Q Consensus 114 ~pg~g~lsE~~~~a~~~~~~Gl~~~G 139 (765)
+...|.-..++.+. .+.+.|+++++
T Consensus 79 V~Spgi~~~~p~~~-~a~~~gi~v~~ 103 (473)
T PRK00141 79 VTSPGWRPDSPLLV-DAQSQGLEVIG 103 (473)
T ss_pred EeCCCCCCCCHHHH-HHHHCCCceee
Confidence 87765544555554 44678999884
No 376
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=72.86 E-value=18 Score=41.38 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=57.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc-cccEE--EEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVK-SADEA--IRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~-~aD~~--~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
++||+|+|-|-.++.+++.+++.|.++++.+..+++...... ...+. +..+. .+ . ..-..+|.|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~-------~~----~--~~~~~~d~v 73 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS-------HD----D--EDLAEFDLV 73 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCc-------cc----h--hccccCCEE
Confidence 689999999999999999999999998887755554211111 11111 11111 11 1 222567899
Q ss_pred EeCCCcccccHHHHHHHHHCCCcEEC
Q 041518 114 HPGYGFLSESADFAQLCGDNGLTFIG 139 (765)
Q Consensus 114 ~pg~g~lsE~~~~a~~~~~~Gl~~~G 139 (765)
+...|.-..++ ......+.|++++|
T Consensus 74 V~SPGi~~~~p-~v~~A~~~gi~i~~ 98 (448)
T COG0771 74 VKSPGIPPTHP-LVEAAKAAGIEIIG 98 (448)
T ss_pred EECCCCCCCCH-HHHHHHHcCCcEEe
Confidence 97776655555 44566788998884
No 377
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=72.84 E-value=5.1 Score=45.05 Aligned_cols=58 Identities=19% Similarity=0.191 Sum_probs=43.2
Q ss_pred ccCCCcceEEEEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEE-------cCCCCccCCCCeEEE
Q 041518 652 VLSPMAGLVVKVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQ-------VTAGQQVSDGSVLFR 716 (765)
Q Consensus 652 v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~-------~~~G~~v~~g~~l~~ 716 (765)
|..-..|+-+.+.|.+-... ....++.-..|.|..+|+|+++. |++||.|.+||+|+.
T Consensus 162 V~i~~~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 162 VGIEIKGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred EEEEEEeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 45556778777777654433 33334555789999999999986 678999999999985
No 378
>PRK06179 short chain dehydrogenase; Provisional
Probab=72.79 E-value=22 Score=37.11 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=46.0
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHh-----CC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRT-----GA 110 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~-----~~ 110 (765)
.+++||+| .|.++..+++.+.+.|++++++..+.+....... -+.+.. +..|.+.+.++.+.. ++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~--~~~~~~-------D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPG--VELLEL-------DVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccCC--CeeEEe-------ecCCHHHHHHHHHHHHHhCCCC
Confidence 36899999 5789999999999999998887655433211111 122322 335555555555432 57
Q ss_pred CEEEeCCC
Q 041518 111 QAIHPGYG 118 (765)
Q Consensus 111 DaV~pg~g 118 (765)
|.++-.-|
T Consensus 75 d~li~~ag 82 (270)
T PRK06179 75 DVLVNNAG 82 (270)
T ss_pred CEEEECCC
Confidence 88886544
No 379
>PRK10537 voltage-gated potassium channel; Provisional
Probab=72.50 E-value=8.8 Score=43.22 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
.++++|+|.|..+..+++.+++.|++++++..+... ... ..+..+..+ +..+ +..++.+.-.++++++..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~--~~~-~~g~~vI~G------D~td-~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLE--HRL-PDDADLIPG------DSSD-SAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhh--hhc-cCCCcEEEe------CCCC-HHHHHhcCcccCCEEEEc
Confidence 357999999999999999999999999888754221 111 111112222 1233 455555555678888876
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCC
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPL 165 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpv 165 (765)
.+...+|........+.+ |+...+..+.|.. ..+.++++|...
T Consensus 310 t~dD~~Nl~ivL~ar~l~-----p~~kIIa~v~~~~-~~~~L~~~GaD~ 352 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMS-----SDVKTVAAVNDSK-NLEKIKRVHPDM 352 (393)
T ss_pred CCChHHHHHHHHHHHHhC-----CCCcEEEEECCHH-HHHHHHhcCCCE
Confidence 544444433333333332 2223333333433 245556666543
No 380
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=72.31 E-value=6.5 Score=47.89 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=33.8
Q ss_pred cCCCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCC
Q 041518 34 QQRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADR 72 (765)
Q Consensus 34 ~~~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~ 72 (765)
++.++||.|+|.|.++..|+..+-..|++|++++.+++.
T Consensus 310 ~~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 310 AKDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred ccccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 457899999999999999999999999999988765543
No 381
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=72.31 E-value=36 Score=35.55 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEe
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~ 67 (765)
.+||||+|.|.++..+++.+.++|+..+.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lv 54 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLL 54 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEE
Confidence 4699999999999999999999999876664
No 382
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=72.24 E-value=20 Score=41.07 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=53.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHH---HCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 37 IEKILIANRGEIAYRIMRTAK---RLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar---~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
.+++||+|.|+.+..+++.++ ..|++++++..+. ...........-+ +-+ +.+.+.++++++|.|
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~-~~~~~~~i~g~pV----------lg~-~~l~~~i~~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTD-PAASGRLLTGLPV----------VGA-DDALRLYARTRYAYV 192 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCC-ccccccccCCCcc----------cCh-hHHHHHHHhCCCCEE
Confidence 478999999999999999887 4689988876432 2111111111000 123 678888999999977
Q ss_pred EeCCCccccc--HHHHHHHHHCCC
Q 041518 114 HPGYGFLSES--ADFAQLCGDNGL 135 (765)
Q Consensus 114 ~pg~g~lsE~--~~~a~~~~~~Gl 135 (765)
+...+...+. ..+.+.|++.++
T Consensus 193 iIAip~~~~~~~~~ll~~l~~~~v 216 (456)
T TIGR03022 193 IVAMPGTQAEDMARLVRKLGALHF 216 (456)
T ss_pred EEecCCccHHHHHHHHHHHHhCCC
Confidence 7554322211 233445555555
No 383
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=72.23 E-value=28 Score=37.61 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=61.5
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEE-EEecC--CCCC---Cccccc--------ccEEEEcCCCCcCcCCCCHHHH
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTV-AVYSD--ADRD---SLHVKS--------ADEAIRIGPPPARLSYLNGSSI 101 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vv-av~s~--~d~~---~~~~~~--------aD~~~~i~~~~~~~syld~~~I 101 (765)
..||+|.| .|.++.++++.+.+.|+..+ .|+.. .+.- ..+..+ .|-++..-|. .....+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~------~~v~~~ 81 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPP------PFAADA 81 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCH------HHHHHH
Confidence 36999999 67789999999999999733 34332 1110 000001 3444432110 112233
Q ss_pred HHHHHHhCCCE-EEeCCCccccc-HHHHHHHHHCCCcEECCcHHHHHHhcCH
Q 041518 102 VDAAIRTGAQA-IHPGYGFLSES-ADFAQLCGDNGLTFIGPPVSAIRDMGDK 151 (765)
Q Consensus 102 l~~a~~~~~Da-V~pg~g~lsE~-~~~a~~~~~~Gl~~~Gp~~eai~~~~DK 151 (765)
++-|-+.++.+ |+..-||--++ ..+.+.+.+.|+.++||+---+....++
T Consensus 82 l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~~~ 133 (291)
T PRK05678 82 ILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPGEC 133 (291)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccccccc
Confidence 44444566665 44445553221 2677788889999999886655444443
No 384
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.16 E-value=18 Score=37.38 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=28.7
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
|.|++||.| .|.++..+++.+.+.|++++++...
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 457899999 5789999999999999998887643
No 385
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=72.03 E-value=5.6 Score=39.24 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=27.4
Q ss_pred CCEEEEEcCcHH-HHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIANRGEI-AYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g~G~~-a~~iiraar~~Gi~vvav~s~ 69 (765)
-|+|||+|+|++ +..+++.+.+.|.++.++...
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 489999999996 888999999999986665543
No 386
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=71.99 E-value=24 Score=37.01 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=65.9
Q ss_pred HHHHHHHHHHCCCCCCCccccCCCCHHHHHHHHHHhCCc-EEEeecCCCCCc-----------cEEEECChhHHHHHHHH
Q 041518 151 KSASKRIMGAAGVPLVPGYHGNEQDIDLMKSEAAKIGYP-ILIKPTHGGGGK-----------GMRIVQSPNDFVDSFLG 218 (765)
Q Consensus 151 K~~~r~~l~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~P-vVVKP~~g~Gg~-----------Gv~~v~s~~el~~a~~~ 218 (765)
.+..|++|+++|+.+-.++... +..++.+.+..++-| .++|+---.||| ||++-.+++...++..+
T Consensus 24 EfQSK~~l~k~Gv~vQ~F~Va~--n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q 101 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRFFVAD--NAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ 101 (412)
T ss_pred HhhhHHHHHhcCeeEEEEEEec--CcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence 3567899999999998877654 777778888888866 899987655544 35667788877777666
Q ss_pred HHHHHHhc--CC-----CCcEEEecccCCCeeEEEEEEEec
Q 041518 219 AQREAAAS--FG-----INTILLEKYITQPRHIEVQIFGDK 252 (765)
Q Consensus 219 ~~~ea~~~--fg-----~~~vlVEeyI~ggrei~v~v~~d~ 252 (765)
....-... -. -+.++|-+-++-.||--..++-|.
T Consensus 102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDR 142 (412)
T KOG1447|consen 102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 142 (412)
T ss_pred HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeecc
Confidence 54321100 00 146677777765566555555553
No 387
>PRK08264 short chain dehydrogenase; Validated
Probab=71.97 E-value=18 Score=36.83 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=47.8
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCC-eEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHh-CCCEE
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGI-RTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRT-GAQAI 113 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi-~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~-~~DaV 113 (765)
.+++||+| .|.++..+++.+.+.|+ +++++..+.+.... ..+....+. -+..+.+.+.++.+.. .+|+|
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~-----~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQ-----LDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEE-----ecCCCHHHHHHHHHhcCCCCEE
Confidence 36899999 57899999999999999 87777654433211 111111111 1345667777766654 47888
Q ss_pred EeCCCc
Q 041518 114 HPGYGF 119 (765)
Q Consensus 114 ~pg~g~ 119 (765)
+-..+.
T Consensus 78 i~~ag~ 83 (238)
T PRK08264 78 VNNAGI 83 (238)
T ss_pred EECCCc
Confidence 866544
No 388
>PRK07577 short chain dehydrogenase; Provisional
Probab=71.91 E-value=30 Score=35.10 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=44.7
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHH----HHhCCCE
Q 041518 38 EKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAA----IRTGAQA 112 (765)
Q Consensus 38 kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a----~~~~~Da 112 (765)
|++||.|+ |.++..+++.+.+.|++++++..+.... ...+.+.. +..+.+.+.+++ +..++|.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~-----~~~~~~~~-------D~~~~~~~~~~~~~~~~~~~~d~ 71 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD-----FPGELFAC-------DLADIEQTAATLAQINEIHPVDA 71 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc-----cCceEEEe-------eCCCHHHHHHHHHHHHHhCCCcE
Confidence 68999994 6899999999999999998887554331 11123332 224444443333 3347898
Q ss_pred EEeCCCc
Q 041518 113 IHPGYGF 119 (765)
Q Consensus 113 V~pg~g~ 119 (765)
++-.-+.
T Consensus 72 vi~~ag~ 78 (234)
T PRK07577 72 IVNNVGI 78 (234)
T ss_pred EEECCCC
Confidence 8865443
No 389
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=71.86 E-value=17 Score=41.68 Aligned_cols=88 Identities=11% Similarity=0.159 Sum_probs=53.4
Q ss_pred CCEEEEEcCcHHHHH-HHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 37 IEKILIANRGEIAYR-IMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 37 ~kkILI~g~G~~a~~-iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
.++|+|+|-|..++. +++.|+++|++|.+.+..... ....+...-+.+.. .+ +.+.+ .++|.|+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~--~~~~l~~~gi~~~~-----~~-~~~~~------~~~d~vv~ 72 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA--VTQRLLELGAIIFI-----GH-DAENI------KDADVVVY 72 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh--HHHHHHHCCCEEeC-----CC-CHHHC------CCCCEEEE
Confidence 469999999999998 799999999998775543222 11112111111100 01 11211 35899998
Q ss_pred CCCcccccHHHHHHHHHCCCcEEC
Q 041518 116 GYGFLSESADFAQLCGDNGLTFIG 139 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~G 139 (765)
..|.-..++.+.++ .+.|+++++
T Consensus 73 spgi~~~~~~~~~a-~~~~i~i~~ 95 (461)
T PRK00421 73 SSAIPDDNPELVAA-RELGIPVVR 95 (461)
T ss_pred CCCCCCCCHHHHHH-HHCCCcEEe
Confidence 77665555655444 578999884
No 390
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=71.66 E-value=18 Score=39.56 Aligned_cols=99 Identities=15% Similarity=0.046 Sum_probs=51.6
Q ss_pred CEEEEEcCcHH-----HHHHHHHHHHCCCeEEEEecCCCCCCcccc-cccEEEEcCCCCc--Cc----------CCCCHH
Q 041518 38 EKILIANRGEI-----AYRIMRTAKRLGIRTVAVYSDADRDSLHVK-SADEAIRIGPPPA--RL----------SYLNGS 99 (765)
Q Consensus 38 kkILI~g~G~~-----a~~iiraar~~Gi~vvav~s~~d~~~~~~~-~aD~~~~i~~~~~--~~----------syld~~ 99 (765)
+||+|.++|.. +..+++.+++.|+++.++............ ..-..+.++.... .. ......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVL 81 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHH
Confidence 56888865422 357899999999999888654321111111 1112333332110 00 112233
Q ss_pred HHHHHHHHhCCCEEEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 100 SIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 100 ~Il~~a~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
.+.+++++.++|.||......+ .....+....+++++
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~~--~~~~~~~~~~~~p~v 118 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYVS--GPGGLAARLLGIPLV 118 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcch--hHHHHHHHHcCCCEE
Confidence 4566678889999997632211 111223345677765
No 391
>PRK06180 short chain dehydrogenase; Provisional
Probab=71.54 E-value=15 Score=38.81 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=29.6
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
++|++||.| .|.++..+++.+.+.|++++++..++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~ 38 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSE 38 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCH
Confidence 357899999 47899999999999999998887544
No 392
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=71.25 E-value=13 Score=43.34 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=34.5
Q ss_pred CCCCCcCCCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCC
Q 041518 29 KSDDKQQRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADR 72 (765)
Q Consensus 29 ~~~~~~~~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~ 72 (765)
++......-.||+|+|.|.+++..+++|+.+|-++++++.+++.
T Consensus 157 ~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~r 200 (509)
T PRK09424 157 ITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEV 200 (509)
T ss_pred eeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 33333334579999999999999999999999988877665443
No 393
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=71.08 E-value=42 Score=35.88 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=24.7
Q ss_pred EEEEEc-CcHHHHHHHHHHHHCCCeEEEE
Q 041518 39 KILIAN-RGEIAYRIMRTAKRLGIRTVAV 66 (765)
Q Consensus 39 kILI~g-~G~~a~~iiraar~~Gi~vvav 66 (765)
||+|.| .|.++..+++++.+.|++.++.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~ 30 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPT 30 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEee
Confidence 688999 7899999999988899998875
No 394
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=71.04 E-value=19 Score=39.58 Aligned_cols=50 Identities=12% Similarity=0.279 Sum_probs=37.3
Q ss_pred EEEeecCCCCCccEEEECChhHHHHHHHHHHHHHHh---cCCCCcEEEecccC
Q 041518 190 ILIKPTHGGGGKGMRIVQSPNDFVDSFLGAQREAAA---SFGINTILLEKYIT 239 (765)
Q Consensus 190 vVVKP~~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~~---~fg~~~vlVEeyI~ 239 (765)
|+||+..|.-|.||..|++.+|+...=++.+..-.. ...-.++||||=|.
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~ 312 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY 312 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc
Confidence 889999999999999999999998765554432111 11126899998776
No 395
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=71.03 E-value=79 Score=39.12 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEecccC
Q 041518 281 NVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEMNTRL 329 (765)
Q Consensus 281 ~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEiN~R~ 329 (765)
.++++...+|.+.+.++-+.+|. +..|||-++..+|++|++- .|+
T Consensus 288 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWai~~~~g~l~ILQ--aRP 332 (795)
T PRK06464 288 SLTDEEVLELAKQAVIIEKHYGR--PMDIEWAKDGDDGKLYIVQ--ARP 332 (795)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEECCCCcEEEEE--eec
Confidence 48889999999999999999876 8899999982248999998 555
No 396
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=71.01 E-value=9.9 Score=42.52 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=65.2
Q ss_pred EEEEcCcHHHHHHHHHHHHCCC--eEEEEecCCCCCCccccccc-------EEEEcCCCCcCcCCCCHHHHHHHHHHhCC
Q 041518 40 ILIANRGEIAYRIMRTAKRLGI--RTVAVYSDADRDSLHVKSAD-------EAIRIGPPPARLSYLNGSSIVDAAIRTGA 110 (765)
Q Consensus 40 ILI~g~G~~a~~iiraar~~Gi--~vvav~s~~d~~~~~~~~aD-------~~~~i~~~~~~~syld~~~Il~~a~~~~~ 110 (765)
|||+|.|.++..+++.+.+.+- ++++.+.+.+. ..++++ ....+ +..|.+.+.++++ +.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~---~~~~~~~~~~~~~~~~~~-------d~~~~~~l~~~~~--~~ 68 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEK---AERLAEKLLGDRVEAVQV-------DVNDPESLAELLR--GC 68 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHH---HHHHHT--TTTTEEEEE---------TTTHHHHHHHHT--TS
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHH---HHHHHhhccccceeEEEE-------ecCCHHHHHHHHh--cC
Confidence 7999999999999999998874 55554433322 111111 22333 3367778777774 45
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCc
Q 041518 111 QAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPG 168 (765)
Q Consensus 111 DaV~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~ 168 (765)
|.|+...+.. .+..++++|.+.|++++-++. ....-....+.++++|+....+
T Consensus 69 dvVin~~gp~-~~~~v~~~~i~~g~~yvD~~~----~~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 69 DVVINCAGPF-FGEPVARACIEAGVHYVDTSY----VTEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp SEEEE-SSGG-GHHHHHHHHHHHT-EEEESS-----HHHHHHHCHHHHHHTTSEEE-S
T ss_pred CEEEECCccc-hhHHHHHHHHHhCCCeeccch----hHHHHHHHHHHHHhhCCEEEeC
Confidence 9999776543 447889999999999994332 1111122334555677766654
No 397
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=70.84 E-value=13 Score=40.73 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=27.0
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHC-CCeEEEEec
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRL-GIRTVAVYS 68 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~-Gi~vvav~s 68 (765)
|+||||+|+ |.++..+++.+.+. |++++++..
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 358999995 99999999999876 799888753
No 398
>PRK07060 short chain dehydrogenase; Provisional
Probab=70.68 E-value=15 Score=37.54 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=45.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcc-cccccEEEEcCCCCcCcCCCCHHHHHHHHHHh-CCCEE
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLH-VKSADEAIRIGPPPARLSYLNGSSIVDAAIRT-GAQAI 113 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~-~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~-~~DaV 113 (765)
.+++||.|. |.++..+++.+.+.|++++++..+....... .......+.. +..+.+.+.++.... ++|.|
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-------D~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRL-------DVGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEe-------cCCCHHHHHHHHHHhCCCCEE
Confidence 479999995 7899999999999999988776543211000 0011122322 234555566655553 47888
Q ss_pred EeCCC
Q 041518 114 HPGYG 118 (765)
Q Consensus 114 ~pg~g 118 (765)
+-.-+
T Consensus 82 i~~ag 86 (245)
T PRK07060 82 VNCAG 86 (245)
T ss_pred EECCC
Confidence 85543
No 399
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=70.53 E-value=20 Score=36.60 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=29.1
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
|+|++||.| .|.++..+++.+.+.|++++++..+
T Consensus 1 ~~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 457999998 5789999999999999998887655
No 400
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=70.36 E-value=22 Score=33.29 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=25.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeEEEEe
Q 041518 38 EKILIANRGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~~Gi~vvav~ 67 (765)
+||+|+|.|.++..+++.+.+.|+.-+.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lv 32 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLV 32 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeec
Confidence 699999999999999999999999655443
No 401
>PLN02240 UDP-glucose 4-epimerase
Probab=70.33 E-value=18 Score=39.57 Aligned_cols=74 Identities=12% Similarity=0.046 Sum_probs=47.4
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCc-ccccc-------c--EEEEcCCCCcCcCCCCHHHHHHH
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSL-HVKSA-------D--EAIRIGPPPARLSYLNGSSIVDA 104 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~-~~~~a-------D--~~~~i~~~~~~~syld~~~Il~~ 104 (765)
|.|+|||+|+ |.++..+++.+.+.|++++++......... ..+.. . ..+. -+..+.+.+.++
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~D~~~~~~l~~~ 76 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHK-------VDLRDKEALEKV 76 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEe-------cCcCCHHHHHHH
Confidence 3479999995 899999999999999998887532111100 00000 0 1111 145677788777
Q ss_pred HHHhCCCEEEeC
Q 041518 105 AIRTGAQAIHPG 116 (765)
Q Consensus 105 a~~~~~DaV~pg 116 (765)
.++.++|.|+-.
T Consensus 77 ~~~~~~d~vih~ 88 (352)
T PLN02240 77 FASTRFDAVIHF 88 (352)
T ss_pred HHhCCCCEEEEc
Confidence 777788988754
No 402
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=70.26 E-value=15 Score=39.54 Aligned_cols=59 Identities=15% Similarity=0.312 Sum_probs=43.5
Q ss_pred EEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 39 KILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 39 kILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
||||+|+ |.++..+++.+.+.| +++++..... .+ .-+..|.+.+.++.+..++|.|+-.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-----------~~-------~~Dl~d~~~~~~~~~~~~~D~Vih~ 61 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHST-----------DY-------CGDFSNPEGVAETVRKIRPDVIVNA 61 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-----------cc-------cCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 7999995 999999999999999 6666542110 01 1245777888888888889998854
No 403
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=70.22 E-value=23 Score=40.37 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=58.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc---------ccEEEEcCCCCcCcCCCCHHHHHHHHHH
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKS---------ADEAIRIGPPPARLSYLNGSSIVDAAIR 107 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~---------aD~~~~i~~~~~~~syld~~~Il~~a~~ 107 (765)
-||+.|.+....+..+.+.++++|.+++.+.+..+......++ ..+.+. -.|...+.+.+++
T Consensus 299 gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~d~~el~~~i~~ 369 (428)
T cd01965 299 GKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVF---------VGDLWDLESLAKE 369 (428)
T ss_pred CCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEE---------CCCHHHHHHHhhc
Confidence 4799999988899999999999999998876643322111111 111111 1467889999999
Q ss_pred hCCCEEEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 108 TGAQAIHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 108 ~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
.++|.|+.+. .......++|++++
T Consensus 370 ~~pdliig~~-------~~~~~a~~~~ip~i 393 (428)
T cd01965 370 EPVDLLIGNS-------HGRYLARDLGIPLV 393 (428)
T ss_pred cCCCEEEECc-------hhHHHHHhcCCCEE
Confidence 9999998552 11355566788886
No 404
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=70.15 E-value=38 Score=36.33 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=30.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCC
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDAD 71 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d 71 (765)
++++|+|+|.|.++..+++.+|+.|+.+..+..+.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 468999999999999999999999999866655544
No 405
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=70.01 E-value=17 Score=42.51 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=56.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHH-HCCCeEEEEecCCCCCC----cccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCC
Q 041518 37 IEKILIANRGEIAYRIMRTAK-RLGIRTVAVYSDADRDS----LHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQ 111 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar-~~Gi~vvav~s~~d~~~----~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~D 111 (765)
-||++|.+.|.....++..+. ++|++++++.+...... ....+.+..+.++. ..+ -..++.+++.++|
T Consensus 328 GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~D------~~~-~e~~~~l~~~~~D 400 (513)
T TIGR01861 328 GKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAIDD------PNE-LEGLEAMEMLKPD 400 (513)
T ss_pred CCEEEEECCchHHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEecC------CCH-HHHHHHHHhcCCC
Confidence 479999999988889999998 69999998876432111 11122333343321 122 2345667888999
Q ss_pred EEEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 112 AIHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 112 aV~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
.++.+.- + .....++|+|++
T Consensus 401 llig~s~---~----~~~A~k~gIP~l 420 (513)
T TIGR01861 401 IILTGKR---P----GEVSKKMRVPYL 420 (513)
T ss_pred EEEecCc---c----chhHhhcCCCEE
Confidence 9996631 1 144578899986
No 406
>PLN02686 cinnamoyl-CoA reductase
Probab=69.89 E-value=13 Score=41.31 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=31.6
Q ss_pred CCCCcCCCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEec
Q 041518 30 SDDKQQRIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYS 68 (765)
Q Consensus 30 ~~~~~~~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s 68 (765)
+++...++|+|||.|+ |.++..+++.+.+.|++++++..
T Consensus 46 ~~~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 46 DAGADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred ccccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 3344556789999995 78999999999999999877543
No 407
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=69.76 E-value=20 Score=37.15 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=28.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 38 EKILIANRGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
++|||+|+|..|.+=++.+.+.|-++.+|..+
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 59999999999999899999999998777544
No 408
>PRK06953 short chain dehydrogenase; Provisional
Probab=69.74 E-value=17 Score=36.79 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
||++||.| .|.++..+++.+.+.|++++++..+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECC
Confidence 57899998 5788999999999999998887654
No 409
>PRK08643 acetoin reductase; Validated
Probab=69.66 E-value=17 Score=37.55 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=29.1
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
|.|++||+| .|.++..+++.+.+.|++++++..+.
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~ 36 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE 36 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 457899999 56899999999999999988876543
No 410
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.66 E-value=51 Score=37.89 Aligned_cols=91 Identities=9% Similarity=0.039 Sum_probs=53.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPG 116 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg 116 (765)
.|||||+|-|..+..+++.+++ |.++++.+...........+.+..+ ++. ...+.+ .++|.|+..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~-~~~-------~~~~~~------~~~d~vV~S 70 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNA-IAA-------LSDSRW------QNLDKIVLS 70 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCce-ecc-------CChhHh------hCCCEEEEC
Confidence 4799999999999999999995 9998776532221100001101111 111 111111 368999988
Q ss_pred CCcccccHHHHHHHHHCCCcEECCcHHH
Q 041518 117 YGFLSESADFAQLCGDNGLTFIGPPVSA 144 (765)
Q Consensus 117 ~g~lsE~~~~a~~~~~~Gl~~~Gp~~ea 144 (765)
.|.-..++.+..+ .+.|+++++ ..+.
T Consensus 71 PgI~~~~p~~~~a-~~~gi~v~~-e~el 96 (454)
T PRK01368 71 PGIPLTHEIVKIA-KNFNIPITS-DIDL 96 (454)
T ss_pred CCCCCCCHHHHHH-HHCCCceec-HHHH
Confidence 7765555655444 577999884 3443
No 411
>PRK06194 hypothetical protein; Provisional
Probab=69.53 E-value=21 Score=37.67 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=28.3
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
.+++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47999999 4789999999999999998887643
No 412
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.38 E-value=16 Score=37.55 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=47.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCccc-ccc--cEEEEcCCCCcCcCCCCHHHHHHHHHHh----
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHV-KSA--DEAIRIGPPPARLSYLNGSSIVDAAIRT---- 108 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~-~~a--D~~~~i~~~~~~~syld~~~Il~~a~~~---- 108 (765)
.+++||+|+ |.++..+++.+.+.|++++++..+.+...... .+. .....+ .-+..+.+.+.+++++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAV-----AADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEE-----ECCCCCHHHHHHHHHHHHHHh
Confidence 369999994 78999999999999999888765543211111 110 111111 11346666666665543
Q ss_pred -CCCEEEeCCCc
Q 041518 109 -GAQAIHPGYGF 119 (765)
Q Consensus 109 -~~DaV~pg~g~ 119 (765)
++|+|+..-+.
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 68988866543
No 413
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=69.28 E-value=22 Score=39.25 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=28.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCC-eEEEEecC
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGI-RTVAVYSD 69 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi-~vvav~s~ 69 (765)
..+||||+|.|.++..++..+.+.|+ ++.+++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35799999999999999999999999 55555543
No 414
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=69.26 E-value=19 Score=39.54 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=28.7
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEec
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYS 68 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s 68 (765)
++||||+|+ |.++..+++.+.+.|++|++++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 579999995 99999999999999999988864
No 415
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=69.23 E-value=41 Score=37.67 Aligned_cols=126 Identities=14% Similarity=0.167 Sum_probs=75.1
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHC--CCeEEEEecCCCCCCccccccc----EEEEcCCCCc------------CcCCCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRL--GIRTVAVYSDADRDSLHVKSAD----EAIRIGPPPA------------RLSYLN 97 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~--Gi~vvav~s~~d~~~~~~~~aD----~~~~i~~~~~------------~~syld 97 (765)
||+|.|+| .|.++...++.+++. .++++++..+.+.. .....+. +++.+..... .+-+.-
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~-~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G 79 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVE-LLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAG 79 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHH-HHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEC
Confidence 58999999 788887777777665 78888886544332 1111111 1222211000 001123
Q ss_pred HHHHHHHHHHhCCCEEEeCC-CcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCC
Q 041518 98 GSSIVDAAIRTGAQAIHPGY-GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVP 167 (765)
Q Consensus 98 ~~~Il~~a~~~~~DaV~pg~-g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~ 167 (765)
.+.+.+++....+|.|+... |+....+ .-...+.|-++.-.+-+++-..++- ..+.++++|....|
T Consensus 80 ~~~~~~l~~~~~vD~Vv~Ai~G~aGl~p--tl~Ai~aGK~VaLANKEslV~aG~~--i~~~a~~~g~~i~P 146 (385)
T PRK05447 80 EEGLCELAALPEADVVVAAIVGAAGLLP--TLAAIRAGKRIALANKESLVCAGEL--VMDAAKKSGAQILP 146 (385)
T ss_pred hhHHHHHhcCCCCCEEEEeCcCcccHHH--HHHHHHCCCcEEEeCHHHHHhhHHH--HHHHHHHcCCeEEE
Confidence 56788888888899998764 4433223 3334477887776677777755443 35667788877655
No 416
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=69.19 E-value=37 Score=42.16 Aligned_cols=91 Identities=7% Similarity=0.034 Sum_probs=56.2
Q ss_pred CCEEEEEcCcHHHHHH-HHHHHHCCCeEEEEecCCCCCCccccccc--EEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 37 IEKILIANRGEIAYRI-MRTAKRLGIRTVAVYSDADRDSLHVKSAD--EAIRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 37 ~kkILI~g~G~~a~~i-iraar~~Gi~vvav~s~~d~~~~~~~~aD--~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
|++|+|+|-|..+... ++.|++.|++|.+.+..... ....+.+ -.+..+. +.+.+ .++|.|
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~--~~~~L~~~gi~~~~g~--------~~~~~------~~~d~v 67 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGK--TVEKLKAKGARFFLGH--------QEEHV------PEDAVV 67 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCCh--HHHHHHHCCCEEeCCC--------CHHHc------CCCCEE
Confidence 5789999999888887 99999999998775433222 1111211 1122111 11111 357999
Q ss_pred EeCCCcccccHHHHHHHHHCCCcEECCcHHHH
Q 041518 114 HPGYGFLSESADFAQLCGDNGLTFIGPPVSAI 145 (765)
Q Consensus 114 ~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai 145 (765)
+...|.-..++.+..+ .+.|+++++ ..+.+
T Consensus 68 V~SpgI~~~~p~~~~a-~~~gi~v~~-~~el~ 97 (809)
T PRK14573 68 VYSSSISKDNVEYLSA-KSRGNRLVH-RAELL 97 (809)
T ss_pred EECCCcCCCCHHHHHH-HHCCCcEEe-HHHHH
Confidence 9777766666766554 578999883 44443
No 417
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=69.00 E-value=37 Score=37.60 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=43.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCC-CeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHH---hCCC
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLG-IRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIR---TGAQ 111 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~G-i~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~---~~~D 111 (765)
-++|||.|+ |..+..+++-|+..| ..++++.+.......-.-=||+.+ +|.+. .+++..++ .++|
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vv---------dy~~~-~~~e~~kk~~~~~~D 227 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVV---------DYKDE-NVVELIKKYTGKGVD 227 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEee---------cCCCH-HHHHHHHhhcCCCcc
Confidence 468888884 577888899999999 555554443322211122256555 46663 44444444 4799
Q ss_pred EEEeCCCc
Q 041518 112 AIHPGYGF 119 (765)
Q Consensus 112 aV~pg~g~ 119 (765)
.|+-..|.
T Consensus 228 vVlD~vg~ 235 (347)
T KOG1198|consen 228 VVLDCVGG 235 (347)
T ss_pred EEEECCCC
Confidence 99966443
No 418
>PLN02253 xanthoxin dehydrogenase
Probab=68.95 E-value=17 Score=38.27 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=28.0
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
.|++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999 4689999999999999998887643
No 419
>PRK07074 short chain dehydrogenase; Provisional
Probab=68.92 E-value=19 Score=37.20 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=46.8
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCccc-cccc-EEEEcCCCCcCcCCCCHHHHHHHHHHh----
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHV-KSAD-EAIRIGPPPARLSYLNGSSIVDAAIRT---- 108 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~-~~aD-~~~~i~~~~~~~syld~~~Il~~a~~~---- 108 (765)
|.|++||.|+ |.++..+++.+.+.|++++++..+........ .+.. ....+ .-+..+.+.+.....+.
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~-----~~D~~~~~~~~~~~~~~~~~~ 75 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPV-----ACDLTDAASLAAALANAAAER 75 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEE-----EecCCCHHHHHHHHHHHHHHc
Confidence 4578999995 78999999999999999888765432210000 0110 11111 11335666665555442
Q ss_pred -CCCEEEeCCCc
Q 041518 109 -GAQAIHPGYGF 119 (765)
Q Consensus 109 -~~DaV~pg~g~ 119 (765)
++|.|+-..+.
T Consensus 76 ~~~d~vi~~ag~ 87 (257)
T PRK07074 76 GPVDVLVANAGA 87 (257)
T ss_pred CCCCEEEECCCC
Confidence 58988866543
No 420
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.87 E-value=3.3 Score=46.30 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=46.4
Q ss_pred CCCcccCCCcceEE--EEEcCCCCeecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC
Q 041518 648 PPGSVLSPMAGLVV--KVLANDGTKVEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV 720 (765)
Q Consensus 648 ~~~~v~ap~~G~v~--~~~v~~Gd~V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~ 720 (765)
.+..|+||-+|+|+ .|+=.=| -+++|+.-+-.|.|.+-- ..|.|++|+.|..|++|+.+...
T Consensus 330 ~Ga~V~A~AdG~VvyA~~l~GYG-------~vvIldhG~gy~slyg~~----~~i~v~~G~~V~AGepIa~~G~s 393 (420)
T COG4942 330 AGATVKAIADGRVVYADWLRGYG-------LVVILDHGGGYHSLYGGN----QSILVNPGQFVKAGEPIALVGSS 393 (420)
T ss_pred CCCeeeeecCceEEechhhccCc-------eEEEEEcCCccEEEeccc----ceeeecCCCEeecCCchhhccCC
Confidence 34679999999987 3332222 356788888888887753 35789999999999999998765
No 421
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=68.85 E-value=18 Score=41.79 Aligned_cols=88 Identities=14% Similarity=0.217 Sum_probs=59.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc----cccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVK----SADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~----~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
-||+.|.+.+.....+++.++++|++++.+.+.......... +.+..+.++. .+...+.+.+++.++|.
T Consensus 324 Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~d-------~~~~e~~~~i~~~~pDl 396 (475)
T PRK14478 324 GKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMIDD-------ANPRELYKMLKEAKADI 396 (475)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEeC-------CCHHHHHHHHhhcCCCE
Confidence 478999888888888999999999999988765432211011 1122232322 45678888899999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
++.+.. -.....+.|+|++
T Consensus 397 iig~s~-------~~~~a~k~giP~~ 415 (475)
T PRK14478 397 MLSGGR-------SQFIALKAGMPWL 415 (475)
T ss_pred EEecCc-------hhhhhhhcCCCEE
Confidence 996521 1245567899987
No 422
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=68.75 E-value=8.6 Score=36.31 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=27.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEe
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~ 67 (765)
.+++||+|.|..+..++..+.++|++-+.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~ 42 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIV 42 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4799999999999999999999999955554
No 423
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=68.70 E-value=35 Score=36.06 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=45.8
Q ss_pred EEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHH----hC-CCE
Q 041518 39 KILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIR----TG-AQA 112 (765)
Q Consensus 39 kILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~----~~-~Da 112 (765)
+|||+|+ |.++..+++.|.+.|+++.++..++..... ...+.+ .-++.|.+.+.++.+. .+ +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~-------~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHV-------KFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCccc-------cccCCCHHHHHHHHhcccCcCCceeE
Confidence 5899995 899999999999999998888765443210 000111 2367888888777643 35 788
Q ss_pred EEeC
Q 041518 113 IHPG 116 (765)
Q Consensus 113 V~pg 116 (765)
++..
T Consensus 71 v~~~ 74 (285)
T TIGR03649 71 VYLV 74 (285)
T ss_pred EEEe
Confidence 7643
No 424
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=68.52 E-value=9.7 Score=37.75 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
.-++|.|+|-|.++..+++.++.+|.++++++...
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 35899999999999999999999999988776543
No 425
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.41 E-value=51 Score=33.88 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHHHCCCeEEEEec
Q 041518 45 RGEIAYRIMRTAKRLGIRTVAVYS 68 (765)
Q Consensus 45 ~G~~a~~iiraar~~Gi~vvav~s 68 (765)
..+.+..+++++.+-|++++=|.-
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~ 46 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTY 46 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC
Confidence 457799999999999999887653
No 426
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=68.13 E-value=9.9 Score=41.93 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=33.7
Q ss_pred CCCCCCCcCCCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 27 GCKSDDKQQRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 27 ~~~~~~~~~~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
||+-.+ +..-++|+|+|+|..++.++..+++.|+++.++...+
T Consensus 9 ~~~~~~-~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 9 MCKEKP-PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred hcccCC-CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 566333 2235799999999999999999999999988876543
No 427
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=68.09 E-value=21 Score=36.61 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=27.9
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEec
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYS 68 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s 68 (765)
|+|++||.|+ |.++..+++.+.+.|++++++..
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~~ 34 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYA 34 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 6789999994 57899999999999999876543
No 428
>PRK12829 short chain dehydrogenase; Provisional
Probab=68.09 E-value=14 Score=38.21 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=46.8
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCccc-cccc---EEEEcCCCCcCcCCCCHHHHHHHHHH----
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHV-KSAD---EAIRIGPPPARLSYLNGSSIVDAAIR---- 107 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~-~~aD---~~~~i~~~~~~~syld~~~Il~~a~~---- 107 (765)
-+++||+| .|.++..+++.+.+.|++++++..+........ ...+ ..+.. +..|.+.+.++..+
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVA-------DVADPAQVERVFDTAVER 83 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEc-------cCCCHHHHHHHHHHHHHH
Confidence 47999999 578899999999999999888765432211100 0111 11222 33566666555544
Q ss_pred -hCCCEEEeCCCc
Q 041518 108 -TGAQAIHPGYGF 119 (765)
Q Consensus 108 -~~~DaV~pg~g~ 119 (765)
.++|+|+-..+.
T Consensus 84 ~~~~d~vi~~ag~ 96 (264)
T PRK12829 84 FGGLDVLVNNAGI 96 (264)
T ss_pred hCCCCEEEECCCC
Confidence 378998866543
No 429
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=68.02 E-value=32 Score=32.51 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=25.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEe
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~ 67 (765)
||||+|.|.++..+++.+-+.|+.-+.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~iv 29 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLI 29 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999644443
No 430
>PRK07576 short chain dehydrogenase; Provisional
Probab=67.91 E-value=16 Score=38.25 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=28.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
.|++||.|+ |.++..+++.+.+.|+++++++.+.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999995 7899999999999999988876543
No 431
>PLN02214 cinnamoyl-CoA reductase
Probab=67.61 E-value=25 Score=38.63 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
++++|||.|+ |.++..+++.+.+.|++++++..+.
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 44 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNP 44 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCc
Confidence 4679999995 8999999999999999988876543
No 432
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=67.59 E-value=5.7 Score=45.12 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=31.6
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecc
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMK 684 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamK 684 (765)
..+.||..|+|.++++++|+.|..|++|+.|+.-+
T Consensus 42 ~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 42 IEITSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 45899999999999999999999999999997543
No 433
>PRK06138 short chain dehydrogenase; Provisional
Probab=67.58 E-value=18 Score=37.20 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=46.3
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc---cc--EEEEcCCCCcCcCCCCHHHHHHHHHHh--
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKS---AD--EAIRIGPPPARLSYLNGSSIVDAAIRT-- 108 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~---aD--~~~~i~~~~~~~syld~~~Il~~a~~~-- 108 (765)
.|++||+| .|.++..+++.+.+.|++++++..+.+........ .. ..+.. +..|.+.+.+++.+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQG-------DVGSAEAVEALVDFVAA 77 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEc-------CCCCHHHHHHHHHHHHH
Confidence 36899999 57899999999999999988876543221110000 01 12222 335556665555442
Q ss_pred ---CCCEEEeCCCc
Q 041518 109 ---GAQAIHPGYGF 119 (765)
Q Consensus 109 ---~~DaV~pg~g~ 119 (765)
++|+|+-..+.
T Consensus 78 ~~~~id~vi~~ag~ 91 (252)
T PRK06138 78 RWGRLDVLVNNAGF 91 (252)
T ss_pred HcCCCCEEEECCCC
Confidence 78988866543
No 434
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.44 E-value=37 Score=39.05 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=52.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcc--cccc--cEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLH--VKSA--DEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~--~~~a--D~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
.+||+|+|.|..+..+++.+++.|+.+.+.+.++...... .++. ...+..+. ...+.+ .++|.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~-------~~~~~~------~~~dl 80 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGE-------NYLDKL------DGFDV 80 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCC-------CChHHh------ccCCE
Confidence 4799999999999999999999999987765433221110 1111 11222211 111222 35788
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEEC
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFIG 139 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~G 139 (765)
|+...|.-..++.+ ..+.+.|+++++
T Consensus 81 VV~Spgi~~~~p~~-~~a~~~~i~i~s 106 (458)
T PRK01710 81 IFKTPSMRIDSPEL-VKAKEEGAYITS 106 (458)
T ss_pred EEECCCCCCCchHH-HHHHHcCCcEEe
Confidence 88776554334444 444568888873
No 435
>PRK06523 short chain dehydrogenase; Provisional
Probab=67.30 E-value=35 Score=35.28 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=28.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
-|++||.|+ |.++..+++.+.+.|+++++++.+.
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 479999994 6799999999999999988887543
No 436
>PRK07326 short chain dehydrogenase; Provisional
Probab=67.19 E-value=13 Score=37.91 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=28.4
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
.+++||+| .|.++..+++.+.+.|++++++..++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 37899998 57899999999999999988876543
No 437
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=67.07 E-value=28 Score=35.69 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=28.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 38 EKILIANRGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 38 kkILI~g~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
|+|||+|+|..|.+=++.+-+.|-.++++..+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 79999999999999999999999997776543
No 438
>PRK12743 oxidoreductase; Provisional
Probab=67.05 E-value=24 Score=36.59 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=28.2
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEec
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYS 68 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s 68 (765)
|+|++||.|+ +.++..+++.+.+.|+++++++.
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 4689999995 67999999999999999877754
No 439
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=66.95 E-value=18 Score=39.37 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=85.9
Q ss_pred CCCEEEEEcCcHHH-HHHHHHHHHCC--CeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 36 RIEKILIANRGEIA-YRIMRTAKRLG--IRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 36 ~~kkILI~g~G~~a-~~iiraar~~G--i~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
++.||.|+|.|.++ ...+.++++.+ ++++++.. .++. ....++.+ +.+. ..|.+.+++++ ...+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d-~~~~-~a~~~a~~-~~~~-----~~~~~~~~ll~---~~~iD~ 70 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVD-RDPE-RAEAFAEE-FGIA-----KAYTDLEELLA---DPDIDA 70 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEec-CCHH-HHHHHHHH-cCCC-----cccCCHHHHhc---CCCCCE
Confidence 45699999988665 55788888887 47777753 2321 11222322 2121 35666666554 455999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCccccC-CCCHHHHHHHHH--HhCCc
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGYHGN-EQDIDLMKSEAA--KIGYP 189 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~~~~-~~s~~e~~~~~~--~ig~P 189 (765)
|+...-. .-+..++..+.++|..++.-.|=+.....-+ .+.++++++|+..--++... ......+.+.++ .+|-+
T Consensus 71 V~Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~-~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g~lG~v 148 (342)
T COG0673 71 VYIATPN-ALHAELALAALEAGKHVLCEKPLALTLEEAE-ELVELARKAGVKLMVGFNRRFDPAVQALKELIDSGALGEV 148 (342)
T ss_pred EEEcCCC-hhhHHHHHHHHhcCCEEEEcCCCCCCHHHHH-HHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcCCcCce
Confidence 8866321 2346677788889988875444333222222 66778888887765544322 123445555554 46777
Q ss_pred EEEeec
Q 041518 190 ILIKPT 195 (765)
Q Consensus 190 vVVKP~ 195 (765)
..++-.
T Consensus 149 ~~~~~~ 154 (342)
T COG0673 149 VSVQAS 154 (342)
T ss_pred EEEEEE
Confidence 777743
No 440
>PRK06398 aldose dehydrogenase; Validated
Probab=66.80 E-value=50 Score=34.38 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=28.0
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
.|++||.| .+.++..+++.+.+.|++++++..+
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 47999999 4689999999999999998877644
No 441
>PRK07102 short chain dehydrogenase; Provisional
Probab=66.78 E-value=19 Score=36.88 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=29.0
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
||+++|+| .|.++..+++.+-+.|+++++++.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 57899999 57899999999999999988886554
No 442
>PRK07454 short chain dehydrogenase; Provisional
Probab=66.74 E-value=17 Score=37.28 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=29.4
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
.||++||+|+ |.++..+++.+.+.|++++++..+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999994 7899999999999999988876543
No 443
>PLN00200 argininosuccinate synthase; Provisional
Probab=66.67 E-value=57 Score=36.91 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=22.3
Q ss_pred CCCEEEEEcCc-HHHHHHHHHHHHC-CCeEEEEecC
Q 041518 36 RIEKILIANRG-EIAYRIMRTAKRL-GIRTVAVYSD 69 (765)
Q Consensus 36 ~~kkILI~g~G-~~a~~iiraar~~-Gi~vvav~s~ 69 (765)
|++||+|+=+| --..-++..+++. |+++++++.+
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~~G~eViav~id 39 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLRENYGCEVVCFTAD 39 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEE
Confidence 56687777654 3344455566665 9999888754
No 444
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=66.36 E-value=13 Score=43.31 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=31.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCC
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDAD 71 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d 71 (765)
.++||.|+|.|.++..|+..+...|++|++.+.++.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 368999999999999999999999999888765544
No 445
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=66.33 E-value=42 Score=39.68 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=28.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
-|+|||+|+ |.++..+++.|.+.|++++++..+.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 368999995 7899999999999999988876543
No 446
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=66.17 E-value=13 Score=41.60 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=28.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
.++++|+|.|.++..+++.++.+|.++++++.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 367999999999999999999999987776543
No 447
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=66.04 E-value=19 Score=33.40 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=45.9
Q ss_pred EEEEEcCc--HHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCC-CcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 39 KILIANRG--EIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPP-PARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 39 kILI~g~G--~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~-~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
|||+++.. ....+.++.+++.|+++.++..+.+........--..+.++.. ...-.|...-.+..++++.++|.||.
T Consensus 1 KIl~i~~~~~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~DvIh~ 80 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKPDVIHC 80 (139)
T ss_pred CEEEEecCcHHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccCCCCEEEE
Confidence 45666543 4578899999999999998877444211111111122333211 11112333446777888899999996
Q ss_pred CC
Q 041518 116 GY 117 (765)
Q Consensus 116 g~ 117 (765)
-.
T Consensus 81 h~ 82 (139)
T PF13477_consen 81 HT 82 (139)
T ss_pred ec
Confidence 54
No 448
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=65.98 E-value=53 Score=34.75 Aligned_cols=115 Identities=15% Similarity=0.203 Sum_probs=67.6
Q ss_pred CcCCCCHHHHHHHHHHhCCCEEE--eCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCCcc
Q 041518 92 RLSYLNGSSIVDAAIRTGAQAIH--PGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVPGY 169 (765)
Q Consensus 92 ~~syld~~~Il~~a~~~~~DaV~--pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~~~ 169 (765)
.+.|.+.+..++-+++.+..+|. |..|... ..|...+|+.|+.|- . -..|-+.+.+.|+.+.++.
T Consensus 91 tDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliD--G~fR~~LEe~Gmgy~---~--------EVemi~~A~~~gl~T~~yv 157 (268)
T PF09370_consen 91 TDPFRDMDRFLDELKELGFSGVQNFPTVGLID--GQFRQNLEETGMGYD---R--------EVEMIRKAHEKGLFTTAYV 157 (268)
T ss_dssp T-TT--HHHHHHHHHHHT-SEEEE-S-GGG----HHHHHHHHHTT--HH---H--------HHHHHHHHHHTT-EE--EE
T ss_pred cCCCCcHHHHHHHHHHhCCceEEECCcceeec--cHHHHHHHhcCCCHH---H--------HHHHHHHHHHCCCeeeeee
Confidence 45689999999999999999986 5555543 889999999999532 2 2345678899999999874
Q ss_pred ccCCCCHHHHHHHHHHhCCcEEEeec--CCCCCccEEEECChhHHHHHHHHHHHHHH
Q 041518 170 HGNEQDIDLMKSEAAKIGYPILIKPT--HGGGGKGMRIVQSPNDFVDSFLGAQREAA 224 (765)
Q Consensus 170 ~~~~~s~~e~~~~~~~ig~PvVVKP~--~g~Gg~Gv~~v~s~~el~~a~~~~~~ea~ 224 (765)
. +.+++.+.+ +.|--+++=-. ..+|..|.....+.++..+.++++.+.+.
T Consensus 158 --f--~~e~A~~M~-~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~ 209 (268)
T PF09370_consen 158 --F--NEEQARAMA-EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAAR 209 (268)
T ss_dssp -----SHHHHHHHH-HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHH
T ss_pred --c--CHHHHHHHH-HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHH
Confidence 3 888888877 56666555433 33467788888888888888877776654
No 449
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.89 E-value=12 Score=42.66 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=29.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCC
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDAD 71 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d 71 (765)
+|+|+|.|.++..+++.+++.|+++++++.+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 799999999999999999999999998876543
No 450
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=65.87 E-value=21 Score=40.28 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=50.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCC-CCC--Ccc-cccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDA-DRD--SLH-VKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~-d~~--~~~-~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
-||+.|.|.+..+..+++.+.++|++++.+.+.. +.. ... ..+.+....+ +-.|...+.+.+++.++|.
T Consensus 276 Gkrv~i~g~~~~~~~la~~L~elGm~vv~~~t~~~~~~~~~~~~~~l~~~~~v~-------~~~d~~~l~~~i~~~~pDl 348 (396)
T cd01979 276 GKSIFFMGDNLLEIPLARFLTRCGMIVVEVGTPYLDKRFQAAELELLPPMVRIV-------EKPDNYRQLDRIRELRPDL 348 (396)
T ss_pred CCEEEEECCchHHHHHHHHHHHCCCEEEeeCCCcCChHHHHHHHHhcCCCCeEE-------ECCCHHHHHHHHHhcCCCE
Confidence 4799999988889999999999999998875421 111 001 1111222112 1257788999999999999
Q ss_pred EEeCC
Q 041518 113 IHPGY 117 (765)
Q Consensus 113 V~pg~ 117 (765)
++.++
T Consensus 349 li~~~ 353 (396)
T cd01979 349 VVTGL 353 (396)
T ss_pred EEecc
Confidence 99763
No 451
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=65.82 E-value=1.4e+02 Score=30.19 Aligned_cols=136 Identities=16% Similarity=0.166 Sum_probs=75.6
Q ss_pred cCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCCCccccc
Q 041518 44 NRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSES 123 (765)
Q Consensus 44 g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~g~lsE~ 123 (765)
.+|--..-.+..+++.|++++++........ . +.. ++ ..+.+.+...|+..++..+......-.|+
T Consensus 7 SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~-~-~~~---~h---------~~~~e~~~~~A~~lgipl~~i~~~~~~e~ 72 (194)
T cd01994 7 SGGKDSCYALYRALEEGHEVVALLNLTPEEG-S-SMM---YH---------TVNHELLELQAEAMGIPLIRIEISGEEED 72 (194)
T ss_pred cCCHHHHHHHHHHHHcCCEEEEEEEEecCCC-C-ccc---cc---------ccCHHHHHHHHHHcCCcEEEEeCCCCchH
Confidence 4554455556667779999988875432211 0 000 00 13557788888999988665432111111
Q ss_pred --HHHHHHHHH---CCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCC-CccccCCCCHHHHHHHHHHhCCcEEEeecCC
Q 041518 124 --ADFAQLCGD---NGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLV-PGYHGNEQDIDLMKSEAAKIGYPILIKPTHG 197 (765)
Q Consensus 124 --~~~a~~~~~---~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp-~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g 197 (765)
..+...+.+ .|+..+- ..++..-.-|....+.+.++|+... |-|. .+.+++.+..-..||..+|.-++.
T Consensus 73 ~~~~l~~~l~~~~~~g~~~vv--~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~---~~~~~ll~e~~~~g~~~~iv~v~~ 147 (194)
T cd01994 73 EVEDLKELLRKLKEEGVDAVV--FGAILSEYQRTRVERVCERLGLEPLAPLWG---RDQEELLREMIEAGFKAIIIKVAA 147 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEE--ECccccHHHHHHHHHHHHHcCCEEEecccC---CCHHHHHHHHHHcCCeEEEEEecc
Confidence 223222222 2565331 1122222357788889999998643 3232 366777776668899977766654
Q ss_pred C
Q 041518 198 G 198 (765)
Q Consensus 198 ~ 198 (765)
.
T Consensus 148 ~ 148 (194)
T cd01994 148 E 148 (194)
T ss_pred C
Confidence 4
No 452
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=65.74 E-value=18 Score=33.67 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=28.2
Q ss_pred EEEEEcC-cHHHHHHHHHHHH-CCCeEEEEecCCC
Q 041518 39 KILIANR-GEIAYRIMRTAKR-LGIRTVAVYSDAD 71 (765)
Q Consensus 39 kILI~g~-G~~a~~iiraar~-~Gi~vvav~s~~d 71 (765)
||+|.|. |.++..+++.+.+ .|++++++.....
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 8999998 9999999999999 7999888765443
No 453
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.53 E-value=36 Score=39.33 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=54.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcc-cccccE-EEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLH-VKSADE-AIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~-~~~aD~-~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
.|||+|+|-|..+..+++.|++.|.++++.+.+....... ..+.+. .+..+. .+.+.+ .++|.|+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~------~~~d~vV 74 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETE-------ASAQRL------AAFDVVV 74 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCC-------CChHHc------cCCCEEE
Confidence 4799999999999999999999999988765433221111 112111 111111 111222 3579999
Q ss_pred eCCCcccccHHHHHHHHHCCCcEEC
Q 041518 115 PGYGFLSESADFAQLCGDNGLTFIG 139 (765)
Q Consensus 115 pg~g~lsE~~~~a~~~~~~Gl~~~G 139 (765)
...|.-..++.+ ..+.+.|+++++
T Consensus 75 ~SpgI~~~~p~~-~~a~~~~i~i~~ 98 (468)
T PRK04690 75 KSPGISPYRPEA-LAAAARGTPFIG 98 (468)
T ss_pred ECCCCCCCCHHH-HHHHHcCCcEEE
Confidence 777654445554 444678999984
No 454
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=65.44 E-value=26 Score=35.64 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=27.8
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 38 EKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 38 kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
|++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~ 39 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASS 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899999 57899999999999999987766543
No 455
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=65.38 E-value=22 Score=39.96 Aligned_cols=61 Identities=25% Similarity=0.409 Sum_probs=46.7
Q ss_pred HHCCCCCCCccccCCCCHHHHHHHHHHhCCcEEEeecCCCCCccEEE--ECChhHHHHHHHHHHHH
Q 041518 159 GAAGVPLVPGYHGNEQDIDLMKSEAAKIGYPILIKPTHGGGGKGMRI--VQSPNDFVDSFLGAQRE 222 (765)
Q Consensus 159 ~~~Gvpvp~~~~~~~~s~~e~~~~~~~ig~PvVVKP~~g~Gg~Gv~~--v~s~~el~~a~~~~~~e 222 (765)
++.-+|.+|++.+- .++++...+..+. -+||||+.|+||-|+-+ .-+.+|+.+..+++...
T Consensus 340 e~~lL~nv~T~~c~--~~~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~ 402 (488)
T COG2308 340 EEPLLPNVPTYWCG--EPDELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKAD 402 (488)
T ss_pred cccccCCCCeeecC--CHHHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHhC
Confidence 35568888888776 7777777766664 69999999999888876 56777888877777654
No 456
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=65.24 E-value=28 Score=35.25 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=63.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
..+||||+|.|..+..+++.+-..|+..+.+..+ |.-.. ..+....+ .....- .-.-.+.+.+.+++.+++.-+-
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~-d~ve~-snL~rqfl-~~~~di--G~~Ka~a~~~~L~~lNp~v~i~ 94 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDD-RTVTE-EDLGAQFL-IPAEDL--GQNRAEASLERLRALNPRVKVS 94 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEEC-CcccH-hhCCCCcc-ccHHHc--CchHHHHHHHHHHHHCCCCEEE
Confidence 3579999999999999999999999987766432 22111 11111111 110000 0022455667777788876443
Q ss_pred CC-CcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCC
Q 041518 116 GY-GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVP 167 (765)
Q Consensus 116 g~-g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~ 167 (765)
.+ ..+.++ ..+.+....+.+...+... .+...-+++.++|+|..-
T Consensus 95 ~~~~~~~~~--~~~~~~~~dvVi~~~~~~~-----~~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 95 VDTDDISEK--PEEFFSQFDVVVATELSRA-----ELVKINELCRKLGVKFYA 140 (197)
T ss_pred EEecCcccc--HHHHHhCCCEEEECCCCHH-----HHHHHHHHHHHcCCCEEE
Confidence 21 223322 1233455555444322211 123344678888887643
No 457
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.24 E-value=19 Score=37.17 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=29.6
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDAD 71 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d 71 (765)
.|++||.| .|.++..+++.+.+.|++++++..++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~ 39 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE 39 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 37999999 578999999999999999988865543
No 458
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.03 E-value=26 Score=39.93 Aligned_cols=88 Identities=15% Similarity=0.227 Sum_probs=53.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcc--cccc--cEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLH--VKSA--DEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~--~~~a--D~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
-|+++|+|.|.++..+++.+.+.|+.+++++.+....... .++. ...+..+ ++. +. ...++|+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~------~~~--~~-----~~~~~d~ 71 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLG------EYP--EE-----FLEGVDL 71 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeC------Ccc--hh-----HhhcCCE
Confidence 4799999999999999999999999988776542111000 0000 0011111 111 11 1246898
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
|+...|....++ ....+.+.|++++
T Consensus 72 vv~~~g~~~~~~-~~~~a~~~~i~~~ 96 (450)
T PRK14106 72 VVVSPGVPLDSP-PVVQAHKKGIEVI 96 (450)
T ss_pred EEECCCCCCCCH-HHHHHHHCCCcEE
Confidence 887766433334 5566677899888
No 459
>PRK06172 short chain dehydrogenase; Provisional
Probab=64.95 E-value=22 Score=36.74 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=28.4
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 38 EKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 38 kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
|++||+| .|.++..+++.+.+.|.+++++..+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 41 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDA 41 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 7999999 46899999999999999988886553
No 460
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=64.93 E-value=23 Score=37.56 Aligned_cols=81 Identities=14% Similarity=0.077 Sum_probs=49.6
Q ss_pred cCCCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCC-CcccccccEE----EEcCCCCcCcCCCCHHHHHHHHHH
Q 041518 34 QQRIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRD-SLHVKSADEA----IRIGPPPARLSYLNGSSIVDAAIR 107 (765)
Q Consensus 34 ~~~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~-~~~~~~aD~~----~~i~~~~~~~syld~~~Il~~a~~ 107 (765)
.++++++||.| ++.|+..+++.+.+.|+.++++.-+.+.. ....++-+.. ..++- +-.+..+.+.+.+..+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~--DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA--DLSDPEALERLEDELKE 80 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEEC--cCCChhHHHHHHHHHHh
Confidence 44678999999 56899999999999999999997655431 1122222222 11211 01122344555555555
Q ss_pred h--CCCEEEeC
Q 041518 108 T--GAQAIHPG 116 (765)
Q Consensus 108 ~--~~DaV~pg 116 (765)
. .+|.++-.
T Consensus 81 ~~~~IdvLVNN 91 (265)
T COG0300 81 RGGPIDVLVNN 91 (265)
T ss_pred cCCcccEEEEC
Confidence 4 68888754
No 461
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=64.90 E-value=7.1 Score=44.25 Aligned_cols=35 Identities=37% Similarity=0.509 Sum_probs=32.0
Q ss_pred CcccCCCcceEEEEEcCCCCeecCCCeEEEEEecc
Q 041518 650 GSVLSPMAGLVVKVLANDGTKVEEGQPILVLEAMK 684 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eamK 684 (765)
..+.||..|+|.++++++|+.|..|++|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 45899999999999999999999999999998654
No 462
>PRK07024 short chain dehydrogenase; Provisional
Probab=64.88 E-value=21 Score=37.10 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=29.0
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
|++++||.| .|.++..+++.+.+.|+++++++.+
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~ 35 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARR 35 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457999999 5789999999999999998887654
No 463
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=64.83 E-value=40 Score=38.61 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=53.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHH---HCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 37 IEKILIANRGEIAYRIMRTAK---RLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar---~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
.+++||+|.|+.+..+.+..+ ..|++++++..+.+... .. ... .-+-+.+.+.+.++++++|.|
T Consensus 124 ~rrvLIIGag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~---~i-------~gv---pVlG~~~dl~~~v~~~~Id~V 190 (442)
T TIGR03013 124 KRRILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA---YV-------PSE---HVIENGDGLVEYVLRHRIDEI 190 (442)
T ss_pred CCcEEEEECCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc---cc-------CCC---cccCCHHHHHHHHHhCCCCEE
Confidence 478999999999888844333 26899988774322211 11 110 113456789999999999998
Q ss_pred EeCCCccccc--HHHHHHHHHCCCcEE
Q 041518 114 HPGYGFLSES--ADFAQLCGDNGLTFI 138 (765)
Q Consensus 114 ~pg~g~lsE~--~~~a~~~~~~Gl~~~ 138 (765)
+.......+. ......|+..|+.+.
T Consensus 191 iIAlp~~~~~~~~~~l~~~~~~gv~V~ 217 (442)
T TIGR03013 191 VIALDERRGSLPVDELLECKLSGIEVV 217 (442)
T ss_pred EEECchhhcchHHHHHHHHHhCCCEEE
Confidence 8654211111 112345666666543
No 464
>PLN02206 UDP-glucuronate decarboxylase
Probab=64.78 E-value=35 Score=39.13 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=28.1
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEe
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~ 67 (765)
.+||||.| .|.++..+++.+.+.|+++++++
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 46899999 59999999999999999998875
No 465
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=64.63 E-value=11 Score=42.92 Aligned_cols=36 Identities=6% Similarity=-0.007 Sum_probs=31.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCC
Q 041518 36 RIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDAD 71 (765)
Q Consensus 36 ~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d 71 (765)
|+++|+|+|+|..++.++.++.+.|++|.++...+.
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 468999999999999999999999999888875443
No 466
>PRK09135 pteridine reductase; Provisional
Probab=64.46 E-value=28 Score=35.49 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
.+++||.| .|.++..+++.+.+.|++++++...
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 37899999 5789999999999999999887643
No 467
>PRK06057 short chain dehydrogenase; Provisional
Probab=64.34 E-value=25 Score=36.40 Aligned_cols=75 Identities=9% Similarity=-0.004 Sum_probs=45.8
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCCCCCCcc-cccccEEEEcCCCCcCcCCCCHHHHHHHHHH-----hC
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDADRDSLH-VKSADEAIRIGPPPARLSYLNGSSIVDAAIR-----TG 109 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~d~~~~~-~~~aD~~~~i~~~~~~~syld~~~Il~~a~~-----~~ 109 (765)
.|++||+|+ |.++..+++.+.+.|+++++++.+.+..... ..+....+.. +..+.+.+.+++.+ .+
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPT-------DVTDEDAVNALFDTAAETYGS 79 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEe-------eCCCHHHHHHHHHHHHHHcCC
Confidence 589999995 7899999999999999988876543321111 0111122322 23455555554443 26
Q ss_pred CCEEEeCCC
Q 041518 110 AQAIHPGYG 118 (765)
Q Consensus 110 ~DaV~pg~g 118 (765)
+|.++-.-|
T Consensus 80 id~vi~~ag 88 (255)
T PRK06057 80 VDIAFNNAG 88 (255)
T ss_pred CCEEEECCC
Confidence 888875544
No 468
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=64.02 E-value=1.6e+02 Score=36.54 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCcEEEEEe
Q 041518 281 NVTHDFRALLGQAAVSAAKAVSYHNAGTVEFIVDTVSDQFYFMEM 325 (765)
Q Consensus 281 ~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~~~~~g~~~~iEi 325 (765)
.++++...+|.+.+.++-+.+|. +..|||-++..+|++|++..
T Consensus 286 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWa~~~~~g~l~iLQa 328 (782)
T TIGR01418 286 SLSDEEILELAKLAVLIEKHYGR--PMDIEWAKDGFDGEIFIVQA 328 (782)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEECCCCeEEEEEe
Confidence 58899999999999999999885 88999999832678999984
No 469
>PRK06482 short chain dehydrogenase; Provisional
Probab=64.01 E-value=23 Score=37.20 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=28.9
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
|.|++||.| .|.++..+++.+.+.|++++++..+
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357899999 5789999999999999998887654
No 470
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=64.00 E-value=33 Score=40.16 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=53.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHH-HCCCeEEEEecCCCCCCccc-----ccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCC
Q 041518 37 IEKILIANRGEIAYRIMRTAK-RLGIRTVAVYSDADRDSLHV-----KSADEAIRIGPPPARLSYLNGSSIVDAAIRTGA 110 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar-~~Gi~vvav~s~~d~~~~~~-----~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~ 110 (765)
-||+.|.|....+..+.+.+. ++|++++.+.+......... .++|+.... .|...+.+.+++.++
T Consensus 295 Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~---------dD~~ei~~~i~~~~p 365 (511)
T TIGR01278 295 GKRAFVFGDATHAVGMTKILARELGIHIVGAGTYCKYDADWVREQVAGYVDEVLIT---------DDFQEVADAIAALEP 365 (511)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCCEEEecCCchhhhHHHHHHHHHhcCCCeEEe---------CCHHHHHHHHHhcCC
Confidence 479999999999999999997 89999876543211111111 122332221 245678888888888
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 111 QAIHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 111 DaV~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
|.|+.+. .-.....++|+|++
T Consensus 366 dliiG~~-------~er~~a~~lgip~~ 386 (511)
T TIGR01278 366 ELVLGTQ-------MERHSAKRLDIPCG 386 (511)
T ss_pred CEEEECh-------HHHHHHHHcCCCEE
Confidence 8888432 11233455666655
No 471
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=63.98 E-value=12 Score=45.48 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHH-HCCCeEEEEecCCC
Q 041518 35 QRIEKILIANRGEIAYRIMRTAK-RLGIRTVAVYSDAD 71 (765)
Q Consensus 35 ~~~kkILI~g~G~~a~~iiraar-~~Gi~vvav~s~~d 71 (765)
+.++||.|+|.|.++..|+..+- ..|+.|++++.+++
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 46899999999999999999877 88999998776543
No 472
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=63.96 E-value=90 Score=33.06 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=53.5
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCC-CeEEEEecCCCCCC-------------ccc----------ccccEEEEcCCCCc
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLG-IRTVAVYSDADRDS-------------LHV----------KSADEAIRIGPPPA 91 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~G-i~vvav~s~~d~~~-------------~~~----------~~aD~~~~i~~~~~ 91 (765)
|-||+|+| .|.++..+++++.+.. ++.++....++... ..+ ..+|-.+ +-..
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~I--DFT~- 78 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLI--DFTT- 78 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEE--ECCC-
Confidence 45799999 5899999999998764 77666544333211 001 1112222 1111
Q ss_pred CcCCCCHHHHHHHHHHhCCCEEEeCCCccccc-HHHHHHHHHCCC
Q 041518 92 RLSYLNGSSIVDAAIRTGAQAIHPGYGFLSES-ADFAQLCGDNGL 135 (765)
Q Consensus 92 ~~syld~~~Il~~a~~~~~DaV~pg~g~lsE~-~~~a~~~~~~Gl 135 (765)
..-....+++|.+++...|+-..||-.|. ..+.++.++.++
T Consensus 79 ---P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~v 120 (266)
T COG0289 79 ---PEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPV 120 (266)
T ss_pred ---chhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCE
Confidence 11224567777788888888777776554 334445555444
No 473
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=63.92 E-value=11 Score=33.85 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=43.2
Q ss_pred ecCCCeEEEEEecceEEEEEcCCCeEEEEEEcCCCCccCCCCeEEEEEeC---cceeeeecceeeeeccccee
Q 041518 671 VEEGQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQAV---HIQLAVHGFVVQFVQDNLIH 740 (765)
Q Consensus 671 V~~G~~l~~~eamKm~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~~~---~~~~~~~~~~~~~~~~~~~~ 740 (765)
..++..+..+..=+.-.--..-..|.-.+..|++||.|..||+|++.+.. .....+-|+|..|.+....|
T Consensus 15 ~s~~~~i~~~~~p~~v~ipL~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~~~sa~iHAsvSG~V~~I~~~~~~~ 87 (101)
T PF13375_consen 15 LSKDKPIEEAPLPKKVVIPLRQHIGAPAEPVVKVGDKVKKGQLIAEAEGFLSAPIHASVSGTVTAIEKRPIPH 87 (101)
T ss_pred cccCCCeEECCCcCEEEEECcccCCCcceEEEcCCCEEcCCCEEEecCCCcEeeEEcCCCeEEEEEeeeEcCC
Confidence 44455554444222211111233455567789999999999999998743 34456788888875554443
No 474
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=63.87 E-value=22 Score=41.42 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred cccCCCCccchheecccccccCCCCCCCCCcCCCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCC--------C
Q 041518 4 TLRRKPNDRSFILQSRLFSVSKSGCKSDDKQQRIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRD--------S 74 (765)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~--------~ 74 (765)
+|+|.|..-.+-..+..+.. |+|||.| +|.++..+++.+-+.+.+.+.+.+...-. .
T Consensus 231 LLgR~pV~~d~~~i~~~~~g--------------K~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~ 296 (588)
T COG1086 231 LLGRPPVALDTELIGAMLTG--------------KTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELR 296 (588)
T ss_pred HhCCCCCCCCHHHHHhHcCC--------------CEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHH
Q ss_pred cccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 75 LHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 75 ~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
......+....++. ..|.+.+..+.+.+++|.|+
T Consensus 297 ~~~~~~~~~~~igd------VrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 297 EKFPELKLRFYIGD------VRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred hhCCCcceEEEecc------cccHHHHHHHHhcCCCceEE
No 475
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=63.77 E-value=25 Score=36.36 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=28.9
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
.|++||.| .|.++..+++.+.+.|++++++..+.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 40 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKP 40 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 37899999 47899999999999999988876543
No 476
>PRK05865 hypothetical protein; Provisional
Probab=63.57 E-value=87 Score=38.99 Aligned_cols=110 Identities=11% Similarity=0.164 Sum_probs=66.1
Q ss_pred EEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEeCC
Q 041518 39 KILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGY 117 (765)
Q Consensus 39 kILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~pg~ 117 (765)
||||.| .|.++..+++.+.+.|++++++........ ... -..+. -+..|.+.+.++.+ ++|.|+-.-
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~-~~~--v~~v~-------gDL~D~~~l~~al~--~vD~VVHlA 69 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSW-PSS--ADFIA-------ADIRDATAVESAMT--GADVVAHCA 69 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc-ccC--ceEEE-------eeCCCHHHHHHHHh--CCCEEEECC
Confidence 799999 489999999999999999888764321110 000 01222 13466677766664 588877553
Q ss_pred Cccc---c-c----HHHHHHHHHCCCc-EECCcHHHHHHhcCHHHHHHHHHHCCCCCC
Q 041518 118 GFLS---E-S----ADFAQLCGDNGLT-FIGPPVSAIRDMGDKSASKRIMGAAGVPLV 166 (765)
Q Consensus 118 g~ls---E-~----~~~a~~~~~~Gl~-~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp 166 (765)
+... + | ..+.+++.+.|+. ++..+... |..+.+++.+.|+++.
T Consensus 70 a~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------K~aaE~ll~~~gl~~v 121 (854)
T PRK05865 70 WVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH------QPRVEQMLADCGLEWV 121 (854)
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------HHHHHHHHHHcCCCEE
Confidence 2211 1 1 1345666666652 33222221 7777788888888763
No 477
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.53 E-value=27 Score=36.12 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=29.3
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
.|++||.|+ |.++..+++.+.+.|++++++..+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 589999995 7899999999999999988876544
No 478
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=63.21 E-value=9.9 Score=39.15 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=28.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEe
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~ 67 (765)
-+|++|.|-|..+..+++.+.++|.+++++.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vs 53 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVS 53 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 4799999999999999999999999988875
No 479
>PRK07236 hypothetical protein; Provisional
Probab=63.11 E-value=13 Score=41.49 Aligned_cols=35 Identities=6% Similarity=-0.102 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 35 QRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 35 ~~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
||..+|+|+|+|..++-++..|++.|+++.++...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 34579999999999999999999999998877643
No 480
>PRK12784 hypothetical protein; Provisional
Probab=63.07 E-value=15 Score=31.00 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=28.9
Q ss_pred cccCCCcceEEEEEcCCCCeecCCCeEEEEEec
Q 041518 651 SVLSPMAGLVVKVLANDGTKVEEGQPILVLEAM 683 (765)
Q Consensus 651 ~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~~eam 683 (765)
.|.--.+|.|..+.|++||.|..+..|+.+|-.
T Consensus 45 ~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 45 KVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred EEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 455568899999999999999999999999854
No 481
>PRK12742 oxidoreductase; Provisional
Probab=63.07 E-value=24 Score=35.93 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=44.8
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccc----cEEEEcCCCCcCcCCCCHHHHHHHHHHh-CC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSA----DEAIRIGPPPARLSYLNGSSIVDAAIRT-GA 110 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~a----D~~~~i~~~~~~~syld~~~Il~~a~~~-~~ 110 (765)
.|++||.| +|.++..+++.+.+.|++++++....... ...+. -..+.. +..+.+.+.++.++. ++
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~--~~~l~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDA--AERLAQETGATAVQT-------DSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHH--HHHHHHHhCCeEEec-------CCCCHHHHHHHHHHhCCC
Confidence 47999999 47899999999999999977654321110 00110 112222 335666677776654 47
Q ss_pred CEEEeCCC
Q 041518 111 QAIHPGYG 118 (765)
Q Consensus 111 DaV~pg~g 118 (765)
|.++-.-|
T Consensus 77 d~li~~ag 84 (237)
T PRK12742 77 DILVVNAG 84 (237)
T ss_pred cEEEECCC
Confidence 88775543
No 482
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=62.69 E-value=25 Score=38.30 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=31.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCC
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADR 72 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~ 72 (765)
||+++|.++.++.+++++.+.|+++++|.+.++.
T Consensus 2 kIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~ 35 (313)
T TIGR00460 2 RIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDK 35 (313)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCCC
Confidence 8999999999999999999999999999987764
No 483
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=62.63 E-value=15 Score=39.59 Aligned_cols=119 Identities=8% Similarity=0.063 Sum_probs=63.8
Q ss_pred cCCCCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 34 QQRIEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 34 ~~~~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
+....+|||+|.|..+..+++.+-..|+..+.+..+ +.- ....+.-.++ +....- .-.-.+...+.+++.+++.-
T Consensus 16 kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~-d~v-e~snL~rqf~-~~~~dI--Gk~Kaea~~~~L~eLNp~V~ 90 (286)
T cd01491 16 KLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDT-KPC-SWSDLSSQFY-LREEDI--GKNRAEASQARLAELNPYVP 90 (286)
T ss_pred HHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC-Ccc-chhhcccCcc-CChHHh--CHHHHHHHHHHHHHHCCCCE
Confidence 334579999999999999999999999998777533 221 0111111111 111000 00123455566667776654
Q ss_pred EeCC-CcccccHHHHHHHHHCCCcEECCcHHHHHHhcCHHHHHHHHHHCCCCCCC
Q 041518 114 HPGY-GFLSESADFAQLCGDNGLTFIGPPVSAIRDMGDKSASKRIMGAAGVPLVP 167 (765)
Q Consensus 114 ~pg~-g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~DK~~~r~~l~~~Gvpvp~ 167 (765)
+-.+ +.+. .+.+.+..+.+.....- ..+....+++.++++|..-
T Consensus 91 V~~~~~~~~-----~~~l~~fdvVV~~~~~~-----~~~~~in~~c~~~~ipfI~ 135 (286)
T cd01491 91 VTVSTGPLT-----TDELLKFQVVVLTDASL-----EDQLKINEFCHSPGIKFIS 135 (286)
T ss_pred EEEEeccCC-----HHHHhcCCEEEEecCCH-----HHHHHHHHHHHHcCCEEEE
Confidence 4322 1111 23455555555533221 2233455677888877543
No 484
>PRK08265 short chain dehydrogenase; Provisional
Probab=62.61 E-value=26 Score=36.56 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=28.7
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIANR-GEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g~-G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
.|++||.|+ |.++..+++.+.+.|+++++++.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999995 7899999999999999988876543
No 485
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=62.56 E-value=45 Score=39.11 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=54.6
Q ss_pred CCEEEEEcCcHHHHHHHHHHH-HCCCeEEEEecCCCCCCccc-----ccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCC
Q 041518 37 IEKILIANRGEIAYRIMRTAK-RLGIRTVAVYSDADRDSLHV-----KSADEAIRIGPPPARLSYLNGSSIVDAAIRTGA 110 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar-~~Gi~vvav~s~~d~~~~~~-----~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~ 110 (765)
-||+.|.|....+..+.+.+. ++|++++.+.+......... .+.|+.... .|...+.+.+++.++
T Consensus 293 Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~---------~D~~el~~~i~~~~P 363 (519)
T PRK02910 293 GKRVFVFGDATHAVAAARILSDELGFEVVGAGTYLREDARWVRAAAKEYGDEALIT---------DDYLEVEDAIAEAAP 363 (519)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHHHhcCCCeEEe---------cCHHHHHHHHHhcCC
Confidence 479999999999999999998 79999987654322111111 122332221 255678888888889
Q ss_pred CEEEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 111 QAIHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 111 DaV~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
|.|+.++ -| .....++|+|++
T Consensus 364 dliiG~~---~e----r~~a~~lgiP~~ 384 (519)
T PRK02910 364 ELVLGTQ---ME----RHSAKRLGIPCA 384 (519)
T ss_pred CEEEEcc---hH----HHHHHHcCCCEE
Confidence 9888432 11 234456777765
No 486
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=62.52 E-value=13 Score=38.41 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=28.2
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
.|++||.| +|.++..+++.+.+.|+++++++.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 47999999 4789999999999999998876544
No 487
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.37 E-value=29 Score=40.29 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=52.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccc--EEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHVKSAD--EAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIH 114 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD--~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~ 114 (765)
.++++|+|.|..++.+++.++..|.++++.+..+.. . ..+.+ -.+..+. ...+.+ .++|.|+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~--~-~~l~~~g~~~~~~~-------~~~~~l------~~~D~VV 75 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA--L-RPHAERGVATVSTS-------DAVQQI------ADYALVV 75 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH--H-HHHHhCCCEEEcCc-------chHhHh------hcCCEEE
Confidence 479999999999999999999999997775422111 1 11111 0111111 111111 3569898
Q ss_pred eCCCcccccHHHHHHHHHCCCcEEC
Q 041518 115 PGYGFLSESADFAQLCGDNGLTFIG 139 (765)
Q Consensus 115 pg~g~lsE~~~~a~~~~~~Gl~~~G 139 (765)
...|.-..++.+ ....+.|++++|
T Consensus 76 ~SpGi~~~~p~~-~~a~~~gi~v~~ 99 (488)
T PRK03369 76 TSPGFRPTAPVL-AAAAAAGVPIWG 99 (488)
T ss_pred ECCCCCCCCHHH-HHHHHCCCcEee
Confidence 777655455554 444678999884
No 488
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=62.32 E-value=25 Score=38.79 Aligned_cols=104 Identities=20% Similarity=0.134 Sum_probs=57.2
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHC-CCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEE
Q 041518 36 RIEKILIANR-GEIAYRIMRTAKRL-GIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAI 113 (765)
Q Consensus 36 ~~kkILI~g~-G~~a~~iiraar~~-Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV 113 (765)
||.||+|+|. |.++..+++.+.+. +++++++.+..... ..+++..-.+.. .....|.+.+.. ...++|+|
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g---~~l~~~~~~~~~-~~~~~~~~~~~~----~~~~vD~V 72 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAG---KPLSDVHPHLRG-LVDLVLEPLDPE----ILAGADVV 72 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccC---cchHHhCccccc-ccCceeecCCHH----HhcCCCEE
Confidence 4579999995 89999999998886 78877776532221 112111000100 000112222222 12468999
Q ss_pred EeCCCcccccHHHHHHHHHCCCcEECCcHHHHHHhcC
Q 041518 114 HPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDMGD 150 (765)
Q Consensus 114 ~pg~g~lsE~~~~a~~~~~~Gl~~~Gp~~eai~~~~D 150 (765)
+..... .....++..+.+.|..++ +....-++.+
T Consensus 73 f~alP~-~~~~~~v~~a~~aG~~VI--D~S~~fR~~~ 106 (343)
T PRK00436 73 FLALPH-GVSMDLAPQLLEAGVKVI--DLSADFRLKD 106 (343)
T ss_pred EECCCc-HHHHHHHHHHHhCCCEEE--ECCcccCCCC
Confidence 876422 123556666777899888 4444444443
No 489
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=62.22 E-value=20 Score=34.05 Aligned_cols=97 Identities=18% Similarity=0.281 Sum_probs=56.1
Q ss_pred CCEEEEEcCcH----HHHHHHHHHHHCCCeEEEEecCCCC-----CCcccccccEEEEcCCCCcCcCCCCHHHHHHHH--
Q 041518 37 IEKILIANRGE----IAYRIMRTAKRLGIRTVAVYSDADR-----DSLHVKSADEAIRIGPPPARLSYLNGSSIVDAA-- 105 (765)
Q Consensus 37 ~kkILI~g~G~----~a~~iiraar~~Gi~vvav~s~~d~-----~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a-- 105 (765)
.|+|.++|... .+.++.+-+.+.||+++-|+...+. .-.+.+++|--..++- -+=|...+.+.+++
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDi---VdvFR~~e~~~~i~~e 92 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDI---VDVFRRSEAAPEVARE 92 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcE---EEEecChhhhHHHHHH
Confidence 58999999653 4899999999999999988652221 1111222221110100 01123334444433
Q ss_pred -HHhCCCEEEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 106 -IRTGAQAIHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 106 -~~~~~DaV~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
-+.++..+|--.|. +|....+.++++|+.++
T Consensus 93 al~~~~kv~W~QlGi--~n~ea~~~~~~aG~~vV 124 (140)
T COG1832 93 ALEKGAKVVWLQLGI--RNEEAAEKARDAGLDVV 124 (140)
T ss_pred HHhhCCCeEEEecCc--CCHHHHHHHHHhCcHHH
Confidence 34678888877664 44556677778887543
No 490
>PRK12828 short chain dehydrogenase; Provisional
Probab=62.20 E-value=32 Score=34.78 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=29.0
Q ss_pred CCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCC
Q 041518 37 IEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDA 70 (765)
Q Consensus 37 ~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~~ 70 (765)
.|++||+| .|.++..+++.+.+.|++++++..+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence 37999999 47899999999999999988887654
No 491
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=62.14 E-value=18 Score=36.64 Aligned_cols=49 Identities=33% Similarity=0.424 Sum_probs=39.5
Q ss_pred EEEEcCcHH--HHHHHHHHHHCCCeEEEEecCCCCCCcccccccEEEEcCCCC
Q 041518 40 ILIANRGEI--AYRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPP 90 (765)
Q Consensus 40 ILI~g~G~~--a~~iiraar~~Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~ 90 (765)
|+|-|+||. -..++..+|+.|..++++.++++. .-.+.+|..+.++...
T Consensus 91 iaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~S--sLak~aDvvl~ip~~~ 141 (202)
T COG0794 91 IAISGSGETKELLNLAPKAKRLGAKLIAITSNPDS--SLAKAADVVLVIPVKT 141 (202)
T ss_pred EEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCC--hHHHhcCeEEEccCcc
Confidence 556678876 478899999999999999876665 6788999999887633
No 492
>PRK05868 hypothetical protein; Validated
Probab=62.07 E-value=12 Score=41.78 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=29.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
|++|+|+|+|..++-++..+++.|+++.++...
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~ 33 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERH 33 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Confidence 579999999999999999999999997777544
No 493
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=61.95 E-value=8.3 Score=44.05 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=32.0
Q ss_pred CcccCCCcceEEEEEcCCCCe-ecCCCeEEEEEecc
Q 041518 650 GSVLSPMAGLVVKVLANDGTK-VEEGQPILVLEAMK 684 (765)
Q Consensus 650 ~~v~ap~~G~v~~~~v~~Gd~-V~~G~~l~~~eamK 684 (765)
..+.||..|+|.++++++|+. |..|++|++||...
T Consensus 43 ~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 43 MEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred eEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 568999999999999999999 99999999997643
No 494
>PRK06436 glycerate dehydrogenase; Provisional
Probab=61.88 E-value=51 Score=35.77 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEe
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVY 67 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~ 67 (765)
-|+|.|+|-|.++..+++.++.+|+++++++
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~ 152 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYT 152 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEC
Confidence 4899999999999999999999999987664
No 495
>PRK08263 short chain dehydrogenase; Provisional
Probab=61.83 E-value=25 Score=37.03 Aligned_cols=34 Identities=21% Similarity=0.101 Sum_probs=28.5
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCeEEEEecC
Q 041518 36 RIEKILIAN-RGEIAYRIMRTAKRLGIRTVAVYSD 69 (765)
Q Consensus 36 ~~kkILI~g-~G~~a~~iiraar~~Gi~vvav~s~ 69 (765)
|.|++||.| .|.++..+++.+.+.|++++++..+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 457899999 5789999999999999998877644
No 496
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=61.81 E-value=23 Score=38.43 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=30.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCC
Q 041518 39 KILIANRGEIAYRIMRTAKRLGIRTVAVYSDADR 72 (765)
Q Consensus 39 kILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~ 72 (765)
||+++|.++.++++++++.+.|+++++|.+.++.
T Consensus 2 kIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~ 35 (309)
T PRK00005 2 RIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDR 35 (309)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 8999999999999999999999999999886654
No 497
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=61.65 E-value=94 Score=32.75 Aligned_cols=85 Identities=9% Similarity=0.114 Sum_probs=50.6
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHC-CCeEEEEecCCCCCCcccccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCEEEe
Q 041518 38 EKILIANR-GEIAYRIMRTAKRL-GIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHP 115 (765)
Q Consensus 38 kkILI~g~-G~~a~~iiraar~~-Gi~vvav~s~~d~~~~~~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~DaV~p 115 (765)
-||.|+|. |.++..+++.+.+. +++++++... +....... +. + ....|.|.+.+++ ++|+|+-
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~-~~~~~~~~--~~-~------~i~~~~dl~~ll~-----~~DvVid 66 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDR-PGSPLVGQ--GA-L------GVAITDDLEAVLA-----DADVLID 66 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCcccccc--CC-C------CccccCCHHHhcc-----CCCEEEE
Confidence 38999997 99999999998874 7888886532 22111110 11 1 1123456556542 5898883
Q ss_pred CCCcccccHHHHHHHHHCCCcEE
Q 041518 116 GYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 116 g~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
.... +-....+..+.+.|++++
T Consensus 67 ~t~p-~~~~~~~~~al~~G~~vv 88 (257)
T PRK00048 67 FTTP-EATLENLEFALEHGKPLV 88 (257)
T ss_pred CCCH-HHHHHHHHHHHHcCCCEE
Confidence 3210 011455677788888766
No 498
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=61.58 E-value=31 Score=39.03 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=57.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCCCCCCccc----ccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHV----KSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~----~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
-||+.|.+.+.....+++.++++|++++.+.+......... ...+..+.+.. .|...+.+.+++.++|.
T Consensus 287 gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~e~~~~i~~~~pDl 359 (410)
T cd01968 287 GKKAALYTGGVKSWSLVSALQDLGMEVVATGTQKGTKEDYERIKELLGEGTVIVDD-------ANPRELKKLLKEKKADL 359 (410)
T ss_pred CCEEEEEcCCchHHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHhCCCcEEEeC-------CCHHHHHHHHhhcCCCE
Confidence 47899988887788899999999999988854322110100 01111222222 56678889999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
++.+.. | .....+.|+|++
T Consensus 360 ~ig~s~---~----~~~a~~~gip~~ 378 (410)
T cd01968 360 LVAGGK---E----RYLALKLGIPFC 378 (410)
T ss_pred EEECCc---c----hhhHHhcCCCEE
Confidence 985521 1 245567889887
No 499
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=61.49 E-value=14 Score=42.65 Aligned_cols=88 Identities=10% Similarity=0.114 Sum_probs=57.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCeEEEEecCC---CCCCcc-cccccEEEEcCCCCcCcCCCCHHHHHHHHHHhCCCE
Q 041518 37 IEKILIANRGEIAYRIMRTAKRLGIRTVAVYSDA---DRDSLH-VKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQA 112 (765)
Q Consensus 37 ~kkILI~g~G~~a~~iiraar~~Gi~vvav~s~~---d~~~~~-~~~aD~~~~i~~~~~~~syld~~~Il~~a~~~~~Da 112 (765)
-||+.|.++|..+..++..++++|++++++.+.- +..... ..+.+..+.++. .|...+.+++++.++|.
T Consensus 335 GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~~-------~d~~el~~~i~~~~pDl 407 (466)
T TIGR01282 335 GKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGYEFAHNDDYERTTKYMKDGTLIYDD-------VTHYEFEEFVEKLKPDL 407 (466)
T ss_pred CCEEEEECCCCcHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEeeC-------CCHHHHHHHHHHhCCCE
Confidence 4789999888777778888999999998775421 111111 122333343332 56778899999999999
Q ss_pred EEeCCCcccccHHHHHHHHHCCCcEE
Q 041518 113 IHPGYGFLSESADFAQLCGDNGLTFI 138 (765)
Q Consensus 113 V~pg~g~lsE~~~~a~~~~~~Gl~~~ 138 (765)
++.+.- + .....++|+|+.
T Consensus 408 ~ig~~~---~----~~~a~k~gIP~~ 426 (466)
T TIGR01282 408 VGSGIK---E----KYVFQKMGVPFR 426 (466)
T ss_pred EEecCC---c----cceeeecCCCcc
Confidence 996631 1 233467788763
No 500
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=61.28 E-value=19 Score=39.03 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=45.0
Q ss_pred EEEEEc-CcHHHHHHHHHHHHCCCeEEEEecCCCCCCccc----cccc---EEEEcCCCCcCcCCCCHHHHHHHHHHhCC
Q 041518 39 KILIAN-RGEIAYRIMRTAKRLGIRTVAVYSDADRDSLHV----KSAD---EAIRIGPPPARLSYLNGSSIVDAAIRTGA 110 (765)
Q Consensus 39 kILI~g-~G~~a~~iiraar~~Gi~vvav~s~~d~~~~~~----~~aD---~~~~i~~~~~~~syld~~~Il~~a~~~~~ 110 (765)
||||+| .|.++..+++.+.+.|++++++........... ...+ ..+. -+..|.+.+.++.+..++
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~d~~~~~~~~~~~~~ 74 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVE-------GDIRNEALLTEILHDHAI 74 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEE-------ccCCCHHHHHHHHhcCCC
Confidence 799999 589999999999999999887742211110000 0000 1111 234666777777776789
Q ss_pred CEEEeC
Q 041518 111 QAIHPG 116 (765)
Q Consensus 111 DaV~pg 116 (765)
|+|+-.
T Consensus 75 d~vvh~ 80 (338)
T PRK10675 75 DTVIHF 80 (338)
T ss_pred CEEEEC
Confidence 988754
Done!