BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041519
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 133 FMVTAGLRLLKFP-GEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQR 191
+++ G +L P G + NL+ + L+EN + +P + L+ L L HN+ LQ
Sbjct: 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQS 147
Query: 192 IPECFFVHMHGLKVLNLCHTSIEVLPNSVSD-LTNLRSLLLRWCGILKRVP 241
+P+ F + L L+L + ++ LP V D LT L+ L L + LK VP
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL-YQNQLKSVP 197
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
NL + L N + +P+ + L L+L N+ LQ +P+ F + L LNL H
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 213 IEVLPNSVSD-LTNLRSLLLRW 233
++ LP V D LTNL L L +
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSY 166
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 133 FMVTAGLRLLKFP-GEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQR 191
+++ G +L P G + NL+ + L+EN + +P + L+ L L HN+ LQ
Sbjct: 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ-LQS 147
Query: 192 IPECFFVHMHGLKVLNLCHTSIEVLPNSVSD-LTNLRSLLLRWCGILKRVP 241
+P+ F + L L+L + ++ LP V D LT L+ L L LK VP
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLN-DNQLKSVP 197
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211
+NLE + + +N + +P + L+ L L N+ L+ +P F + L L+L +
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN 143
Query: 212 SIEVLPNSVSD-LTNLRSLLLRWCGILKRVP--SXXXXXXXXXXXXEGTWIEEVPEG-ME 267
++ LP V D LT+L+ L L + LKRVP + + ++ VPEG +
Sbjct: 144 ELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 268 MLENLSHLSL 277
LE L L L
Sbjct: 203 SLEKLKMLQL 212
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL ND E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL N+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL N+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL N+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL N+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 193
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL N+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 159 LMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN 218
L N + +P+ + L+ L L NK LQ +P F + L LNL ++ LPN
Sbjct: 35 LETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93
Query: 219 SVSD-LTNLRSLLL 231
V D LT L+ L L
Sbjct: 94 GVFDKLTQLKELAL 107
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212
+L ++ L N + +P+ + L+ L L N+ LQ +P F + LK L L
Sbjct: 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ 111
Query: 213 IEVLPNSVSD-LTNLRSLLLRWCGILKRVP 241
++ LP+ V D LT L+ L L + LK VP
Sbjct: 112 LQSLPDGVFDKLTQLKDLRL-YQNQLKSVP 140
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL N E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL N E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL N E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 145 PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFF 197
PG LE++SL N E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 156 RVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV 215
R+ L N + +P + L+ L L N+ +Q +P+ F + L +L L ++
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 216 LPNSVSD-LTNLRSLLLRWCGILKRVP 241
LPN V D LT L+ L L LK VP
Sbjct: 91 LPNGVFDKLTQLKELALD-TNQLKSVP 116
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 29/106 (27%)
Query: 152 ENLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECF-------------- 196
++L+ +SL EN F EIP +S C+ L+ L L N + +P F
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 197 ----------FVHMHGLKVLNLCHTSIEV-LPNSVSDLTNLRSLLL 231
+ M GLKVL+L LP S LTNL + LL
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLL 371
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 29/106 (27%)
Query: 152 ENLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECF-------------- 196
++L+ +SL EN F EIP +S C+ L+ L L N + +P F
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 197 ----------FVHMHGLKVLNLCHTSIEV-LPNSVSDLTNLRSLLL 231
+ M GLKVL+L LP S LTNL + LL
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLL 368
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 113 VKMHDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNM- 171
+K H ++ D +T+ S + +VTAG R +QE E L V N F+ I N+
Sbjct: 72 LKTHKIVADKDYSVTANSKVVVVTAGAR------QQEGESRLNLVQRNVNIFKFIIPNII 125
Query: 172 --SPHCEIL 178
SP+C +L
Sbjct: 126 KYSPNCILL 134
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 202 GLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSXXXXXXXX----------X 251
GL+ L L + LP S++ L LR L +R C L +P
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 252 XXXEGTWIEEVPEGMEMLENLSHLSL 277
E T I +P + L+NL L +
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKI 213
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 32/132 (24%)
Query: 71 FSYHRLKDEKLQQCFLYCALGHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKS 130
F YHR+ D+KL Q +Y AL + LN CLL + D +++ + +
Sbjct: 29 FDYHRI-DQKLLQNIVYDALVWSTLN-----CLL--------------VGDKSVQRSGRV 68
Query: 131 P-LFMVTAGLRLLKFP-GEQEWEEN----------LERVSLMENDFEEIPSNMSPHCEIL 178
P + +V L LL P E W++ ++RVSL +E S E
Sbjct: 69 PGVGLVHLPLSLLPGPFPESHWKQGCELAPIFNELVDRVSLDGKFLQESLSRTKNADEFT 128
Query: 179 STLLLQHNKYLQ 190
S LL H+K LQ
Sbjct: 129 SRLLDIHSKMLQ 140
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 150 WEENLERVSLMENDFEEIPSNMSPH--CEILSTLLLQHNKYLQRI 192
W +L+ SL+E F ++P+NMS EI + HN ++ I
Sbjct: 395 WSHSLDSFSLIEKTFFDVPTNMSSGDISEIWLQHIFAHNTSIESI 439
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 150 WEENLERVSLMENDFEEIPSNMSPH--CEILSTLLLQHNKYLQRI 192
W +L+ SL+E F ++P+NMS EI + HN ++ I
Sbjct: 393 WSHSLDSFSLIEKTFFDVPTNMSSGDISEIWLQHIFAHNTSIESI 437
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 150 WEENLERVSLMENDFEEIPSNMSPH--CEILSTLLLQHNKYLQRI 192
W +L+ SL+E F ++P+NMS EI + HN ++ I
Sbjct: 395 WSHSLDSFSLIEKTFFDVPTNMSSGDISEIWLQHIFAHNTSIESI 439
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%)
Query: 146 GEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKV 205
G E+ L + L N E IPS L L L K L+ I E F + LK
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200
Query: 206 LNLCHTSIEVLPN 218
LNL +I+ +PN
Sbjct: 201 LNLGMCNIKDMPN 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,688,353
Number of Sequences: 62578
Number of extensions: 507477
Number of successful extensions: 1066
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1036
Number of HSP's gapped (non-prelim): 36
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)