Query 041519
Match_columns 521
No_of_seqs 314 out of 3715
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-47 3.2E-52 412.9 18.7 484 6-518 337-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 6E-40 1.3E-44 371.9 27.3 279 5-297 369-712 (1153)
3 PLN00113 leucine-rich repeat r 99.8 8.1E-20 1.7E-24 207.3 15.0 326 144-500 85-436 (968)
4 PLN00113 leucine-rich repeat r 99.8 5.2E-19 1.1E-23 200.7 16.9 149 150-301 138-296 (968)
5 PLN03210 Resistant to P. syrin 99.8 1.6E-18 3.5E-23 197.5 17.2 300 151-478 588-911 (1153)
6 KOG0444 Cytoskeletal regulator 99.8 4.9E-21 1.1E-25 189.7 -5.8 148 133-283 36-186 (1255)
7 KOG0444 Cytoskeletal regulator 99.7 5.5E-20 1.2E-24 182.3 -3.5 271 143-477 94-379 (1255)
8 KOG4194 Membrane glycoprotein 99.7 1.7E-18 3.7E-23 170.7 -0.3 315 138-500 111-447 (873)
9 KOG4194 Membrane glycoprotein 99.7 4.1E-17 8.8E-22 161.1 5.0 319 152-503 78-427 (873)
10 KOG0617 Ras suppressor protein 99.6 1.1E-16 2.4E-21 134.8 -3.5 155 148-306 29-190 (264)
11 KOG0472 Leucine-rich repeat pr 99.6 2.9E-17 6.2E-22 155.5 -8.5 137 138-280 169-307 (565)
12 KOG4658 Apoptotic ATPase [Sign 99.5 1.1E-14 2.3E-19 158.7 7.3 309 139-479 533-866 (889)
13 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.7E-20 128.4 -2.1 150 135-288 39-196 (264)
14 KOG0472 Leucine-rich repeat pr 99.5 5.7E-16 1.2E-20 146.8 -7.5 256 152-471 45-308 (565)
15 PRK15370 E3 ubiquitin-protein 99.4 3.2E-13 6.9E-18 145.1 9.7 112 153-278 179-291 (754)
16 PRK15387 E3 ubiquitin-protein 99.4 3.6E-12 7.9E-17 136.3 16.2 263 132-484 204-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.4 2.6E-12 5.7E-17 138.1 12.4 120 133-266 182-302 (754)
18 KOG0618 Serine/threonine phosp 99.2 2.2E-13 4.8E-18 141.9 -4.8 95 137-234 53-147 (1081)
19 KOG0618 Serine/threonine phosp 99.2 2.7E-12 5.8E-17 134.0 -0.3 100 154-257 47-147 (1081)
20 PF00931 NB-ARC: NB-ARC domain 99.2 9.9E-12 2.1E-16 121.0 3.2 99 7-106 178-284 (287)
21 PRK15387 E3 ubiquitin-protein 99.1 2.8E-10 6.1E-15 122.0 12.9 226 134-445 227-456 (788)
22 KOG4237 Extracellular matrix p 99.1 1.1E-11 2.5E-16 117.8 1.2 143 132-278 49-196 (498)
23 KOG4237 Extracellular matrix p 98.9 7.9E-11 1.7E-15 112.2 -1.6 120 157-280 51-174 (498)
24 PF14580 LRR_9: Leucine-rich r 98.8 2.4E-09 5.3E-14 94.3 4.0 105 153-262 20-128 (175)
25 KOG0532 Leucine-rich repeat (L 98.7 7.5E-10 1.6E-14 110.3 -2.2 135 140-280 109-244 (722)
26 PF14580 LRR_9: Leucine-rich r 98.7 2E-08 4.4E-13 88.5 5.4 137 116-256 6-149 (175)
27 KOG0532 Leucine-rich repeat (L 98.7 7.5E-10 1.6E-14 110.2 -5.4 121 152-277 75-196 (722)
28 KOG1259 Nischarin, modulator o 98.6 4.2E-09 9E-14 97.1 -1.2 124 152-280 284-409 (490)
29 cd00116 LRR_RI Leucine-rich re 98.6 1.1E-08 2.5E-13 101.0 0.1 106 152-260 23-150 (319)
30 PF13855 LRR_8: Leucine rich r 98.5 9.2E-08 2E-12 69.1 3.2 57 177-234 2-59 (61)
31 KOG1259 Nischarin, modulator o 98.4 4.6E-08 1E-12 90.3 0.7 120 176-301 284-411 (490)
32 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.7E-12 67.1 3.1 59 153-212 2-60 (61)
33 cd00116 LRR_RI Leucine-rich re 98.4 2.2E-07 4.8E-12 91.8 3.7 126 152-280 81-231 (319)
34 COG4886 Leucine-rich repeat (L 98.3 2.5E-07 5.5E-12 94.4 3.4 143 152-299 116-265 (394)
35 COG4886 Leucine-rich repeat (L 98.3 2.2E-07 4.7E-12 94.9 2.7 165 132-301 119-289 (394)
36 PLN03150 hypothetical protein; 98.2 1.8E-06 3.9E-11 92.8 7.4 89 178-267 420-511 (623)
37 PLN03150 hypothetical protein; 98.2 3E-06 6.6E-11 91.0 8.3 108 154-263 420-532 (623)
38 KOG3207 Beta-tubulin folding c 98.2 4.3E-07 9.4E-12 88.2 0.9 85 174-260 119-210 (505)
39 PRK15386 type III secretion pr 98.0 3.6E-05 7.9E-10 76.4 9.2 63 198-265 49-113 (426)
40 PF12799 LRR_4: Leucine Rich r 97.9 9.3E-06 2E-10 53.9 3.2 33 202-234 2-34 (44)
41 KOG4341 F-box protein containi 97.9 1.1E-06 2.4E-11 85.0 -2.1 105 153-257 139-252 (483)
42 PRK15386 type III secretion pr 97.8 4.7E-05 1E-09 75.6 7.1 110 152-276 52-183 (426)
43 KOG3207 Beta-tubulin folding c 97.8 3.6E-06 7.9E-11 82.0 -0.7 82 152-234 121-207 (505)
44 KOG2120 SCF ubiquitin ligase, 97.7 2.2E-06 4.7E-11 79.5 -3.1 58 202-260 186-248 (419)
45 KOG3665 ZYG-1-like serine/thre 97.6 2E-05 4.3E-10 84.7 1.5 106 152-259 122-232 (699)
46 PF12799 LRR_4: Leucine Rich r 97.6 7.9E-05 1.7E-09 49.4 3.8 40 176-217 1-40 (44)
47 KOG4579 Leucine-rich repeat (L 97.6 8.3E-06 1.8E-10 67.1 -1.5 86 153-241 54-139 (177)
48 KOG1859 Leucine-rich repeat pr 97.5 5.7E-06 1.2E-10 85.4 -3.9 117 177-300 165-290 (1096)
49 KOG0531 Protein phosphatase 1, 97.5 2.6E-05 5.7E-10 79.9 0.3 121 153-278 73-194 (414)
50 KOG0531 Protein phosphatase 1, 97.3 4E-05 8.7E-10 78.6 -0.9 109 148-262 91-201 (414)
51 KOG1644 U2-associated snRNP A' 97.3 0.00044 9.6E-09 61.0 5.1 102 175-280 41-150 (233)
52 KOG2120 SCF ubiquitin ligase, 97.2 1.4E-05 3.1E-10 74.2 -4.6 85 176-260 185-273 (419)
53 KOG3665 ZYG-1-like serine/thre 97.2 0.00015 3.2E-09 78.1 2.3 80 176-256 122-204 (699)
54 KOG4579 Leucine-rich repeat (L 97.2 5.2E-05 1.1E-09 62.5 -1.4 87 176-264 53-140 (177)
55 KOG1859 Leucine-rich repeat pr 97.1 1.2E-05 2.6E-10 83.1 -7.6 123 153-280 165-289 (1096)
56 KOG1644 U2-associated snRNP A' 96.9 0.0026 5.6E-08 56.3 6.8 103 151-257 41-150 (233)
57 KOG1909 Ran GTPase-activating 96.8 0.00012 2.7E-09 69.7 -2.9 86 174-260 28-133 (382)
58 KOG2982 Uncharacterized conser 96.7 0.00087 1.9E-08 62.6 2.5 39 174-213 69-109 (418)
59 KOG4341 F-box protein containi 96.4 0.00023 5.1E-09 69.3 -3.9 293 176-520 138-462 (483)
60 KOG2739 Leucine-rich acidic nu 96.3 0.0026 5.6E-08 58.6 2.7 76 222-298 63-152 (260)
61 KOG2739 Leucine-rich acidic nu 95.9 0.004 8.7E-08 57.4 1.8 59 153-214 44-104 (260)
62 KOG2123 Uncharacterized conser 95.7 0.00048 1E-08 63.7 -4.8 81 153-238 20-102 (388)
63 KOG3864 Uncharacterized conser 95.3 0.003 6.5E-08 55.9 -1.0 69 391-474 122-190 (221)
64 PF00560 LRR_1: Leucine Rich R 95.2 0.0062 1.3E-07 33.6 0.3 17 203-219 2-18 (22)
65 PF00560 LRR_1: Leucine Rich R 95.2 0.0084 1.8E-07 33.0 0.8 20 248-267 1-20 (22)
66 PF13306 LRR_5: Leucine rich r 95.2 0.073 1.6E-06 44.4 7.0 107 150-264 10-119 (129)
67 KOG2123 Uncharacterized conser 94.7 0.0025 5.4E-08 59.1 -3.4 102 174-280 17-127 (388)
68 KOG2982 Uncharacterized conser 94.6 0.014 3.1E-07 54.8 1.1 100 179-279 48-155 (418)
69 KOG3864 Uncharacterized conser 94.5 0.0064 1.4E-07 53.9 -1.4 63 431-500 122-184 (221)
70 KOG1909 Ran GTPase-activating 94.2 0.035 7.6E-07 53.4 2.8 107 152-260 157-283 (382)
71 PF13504 LRR_7: Leucine rich r 93.7 0.044 9.5E-07 28.0 1.4 17 460-477 1-17 (17)
72 PF13306 LRR_5: Leucine rich r 93.2 0.18 4E-06 41.9 5.3 93 167-265 3-98 (129)
73 PF13504 LRR_7: Leucine rich r 93.1 0.067 1.4E-06 27.3 1.5 15 202-216 2-16 (17)
74 smart00370 LRR Leucine-rich re 87.6 0.46 1E-05 27.1 1.9 18 201-218 2-19 (26)
75 smart00369 LRR_TYP Leucine-ric 87.6 0.46 1E-05 27.1 1.9 18 201-218 2-19 (26)
76 COG5238 RNA1 Ran GTPase-activa 87.5 0.15 3.3E-06 47.5 -0.3 87 175-262 29-135 (388)
77 smart00370 LRR Leucine-rich re 86.8 0.48 1E-05 27.0 1.7 21 246-266 1-21 (26)
78 smart00369 LRR_TYP Leucine-ric 86.8 0.48 1E-05 27.0 1.7 21 246-266 1-21 (26)
79 PRK04841 transcriptional regul 86.7 3.8 8.3E-05 46.7 10.3 107 12-127 206-332 (903)
80 KOG0473 Leucine-rich repeat pr 85.7 0.027 5.8E-07 51.1 -6.0 82 174-258 40-122 (326)
81 KOG0473 Leucine-rich repeat pr 85.5 0.021 4.6E-07 51.8 -6.7 87 151-240 41-127 (326)
82 smart00367 LRR_CC Leucine-rich 82.0 0.74 1.6E-05 26.3 1.0 17 459-475 1-17 (26)
83 COG5238 RNA1 Ran GTPase-activa 77.9 4.4 9.6E-05 38.1 5.1 17 116-132 44-60 (388)
84 KOG1947 Leucine rich repeat pr 76.9 0.53 1.2E-05 49.0 -1.2 69 391-473 240-308 (482)
85 KOG1947 Leucine rich repeat pr 69.8 1.2 2.6E-05 46.4 -0.7 115 356-500 188-303 (482)
86 smart00364 LRR_BAC Leucine-ric 66.9 3.9 8.4E-05 23.4 1.3 17 202-218 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 53.2 12 0.00026 21.5 1.7 14 201-214 2-15 (26)
88 PF13516 LRR_6: Leucine Rich r 48.7 7.8 0.00017 21.4 0.5 13 201-213 2-14 (24)
89 smart00368 LRR_RI Leucine rich 44.0 19 0.00042 20.8 1.7 14 201-214 2-15 (28)
90 PF12221 HflK_N: Bacterial mem 30.5 45 0.00098 21.7 2.0 21 4-24 17-37 (42)
91 PF09675 Chlamy_scaf: Chlamydi 30.2 2.1E+02 0.0045 22.9 5.9 57 15-87 2-60 (114)
92 TIGR00635 ruvB Holliday juncti 25.2 5E+02 0.011 24.9 9.4 19 91-109 272-291 (305)
93 cd03564 ANTH_AP180_CALM ANTH d 24.5 64 0.0014 26.2 2.5 50 1-51 9-58 (117)
94 PF14050 Nudc_N: N-terminal co 23.2 1.3E+02 0.0028 21.5 3.4 32 9-40 2-33 (62)
95 PF08564 CDC37_C: Cdc37 C term 22.1 69 0.0015 25.3 2.0 35 73-108 21-69 (99)
96 COG2909 MalT ATP-dependent tra 21.0 4.2E+02 0.009 29.8 8.1 55 73-128 266-339 (894)
97 KOG4062 6-O-methylguanine-DNA 20.6 1E+02 0.0022 26.5 2.8 35 10-49 109-145 (178)
98 PRK00080 ruvB Holliday junctio 20.3 7.6E+02 0.016 24.1 9.6 22 12-33 203-224 (328)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-47 Score=412.90 Aligned_cols=484 Identities=29% Similarity=0.371 Sum_probs=339.0
Q ss_pred CChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCC-CchhhHHHHHHHHhHhcCCchhHHHH
Q 041519 6 VPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSL-NDVDTKVFGRLEFSYHRLKDEKLQQC 84 (521)
Q Consensus 6 ~p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~-~~~~~~i~~~L~lSY~~L~~~~lk~c 84 (521)
..+.++++|++||+||+|+|||++++|++|+.|.++.+|+++.+.+..+...+ +++++.|+++|++|||.|| +++|.|
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~-~~lK~C 415 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP-EELKSC 415 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh-HHHHHH
Confidence 33448999999999999999999999999999999999999999886663332 4667899999999999999 999999
Q ss_pred HHHHHH----------------------------------HhHHHHHHHHccccccccCC---CccccchHHHHHHHHHh
Q 041519 85 FLYCAL----------------------------------GHTILNRLVNCCLLESAKDG---SCVKMHDLIRDMALRIT 127 (521)
Q Consensus 85 fl~~s~----------------------------------g~~~~~~L~~~~l~~~~~~~---~~~~mhdli~dl~~~i~ 127 (521)
|+|||+ |+.|+++|++++|++..+.. .+|+|||+|||||..+|
T Consensus 416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ia 495 (889)
T KOG4658|consen 416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIA 495 (889)
T ss_pred HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHh
Confidence 999998 88999999999999988742 79999999999999999
Q ss_pred c-----cCCcEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcC-CCCCchhHhhCCC
Q 041519 128 S-----KSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKY-LQRIPECFFVHMH 201 (521)
Q Consensus 128 ~-----~~~~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~ 201 (521)
+ ++. .++..+.....+|....+ ...|++++.++.+..++... .+++|++|.+.+|.. +..++..+|..++
T Consensus 496 s~~~~~~e~-~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~ 571 (889)
T KOG4658|consen 496 SDFGKQEEN-QIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLP 571 (889)
T ss_pred ccccccccc-eEEECCcCccccccccch-hheeEEEEeccchhhccCCC--CCCccceEEEeecchhhhhcCHHHHhhCc
Confidence 9 565 555555566667766555 68999999999999888774 677999999999974 7888888899999
Q ss_pred CCcEEEccCCC-CCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCC-cCcccCccccCCCCCcccccc
Q 041519 202 GLKVLNLCHTS-IEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSLF 278 (521)
Q Consensus 202 ~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~~ 278 (521)
.|++|||++|. +.++|.+|+.|.|||||+++++ .+..+| ++++|.+|.+|++..+ .+..+|..+..|.+|++|.+.
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 99999999874 7899999999999999999995 599999 9999999999999999 566666666679999999887
Q ss_pred cc--------hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeec----CCCCCCccccceeeeeeeeee
Q 041519 279 MA--------AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSA----SGKRGFLEVDKSVRLFACKIC 346 (521)
Q Consensus 279 ~~--------~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~----~~~~~~~~~~~~~~L~~L~i~ 346 (521)
.. ..++.+|+ .|+.+.+...+. .....+ ..+..|..+..... ...........+.+|++|.|.
T Consensus 651 ~s~~~~~~~~l~el~~Le-~L~~ls~~~~s~-~~~e~l---~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 651 RSALSNDKLLLKELENLE-HLENLSITISSV-LLLEDL---LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSIL 725 (889)
T ss_pred ccccccchhhHHhhhccc-chhhheeecchh-HhHhhh---hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEE
Confidence 54 23344444 555554433332 111111 11222221111100 000011112223355555555
Q ss_pred cCcccccCccccceEEEecccCcccccc-cccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcc
Q 041519 347 ETEETIVLPEDVQYLEMFGVDDVASLND-VLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATN 425 (521)
Q Consensus 347 ~~~~~~~~p~~L~~L~l~~~~~l~~l~~-~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~ 425 (521)
.+........+.+...... .+.++.. .+.++.+. ..+.|. .-.++|+.|.+..|..++++++........
T Consensus 726 ~~~~~e~~~~~~~~~~~~~--~f~~l~~~~~~~~~~~-r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l----- 796 (889)
T KOG4658|consen 726 DCGISEIVIEWEESLIVLL--CFPNLSKVSILNCHML-RDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALLEL----- 796 (889)
T ss_pred cCCCchhhcccccccchhh--hHHHHHHHHhhccccc-cccchh-hccCcccEEEEecccccccCCCHHHHhhhc-----
Confidence 4422111111111111000 0000000 01112221 223333 456899999999999988877654222111
Q ss_pred cccccccCCcccee-ecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCc-ccCCCCCCCCCCceEEEee-hh
Q 041519 426 TIINTVTLPRLKKL-HLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLP-LLDNGQPSPPPALEVIEIK-KE 502 (521)
Q Consensus 426 ~~~~~~~f~~L~~L-~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~-~l~~~~~~~~~~L~~l~~~-~~ 502 (521)
......|++++.+ .+.+.+.++++.. ....+++|+.+.+..||+++.+|.... .+.+ +. =+.+... .+
T Consensus 797 -~~~i~~f~~~~~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~-----~~-~~~~~~~~~~ 867 (889)
T KOG4658|consen 797 -KELILPFNKLEGLRMLCSLGGLPQLYW--LPLSFLKLEELIVEECPKLGKLPLLSTLTIVG-----CE-EKLKEYPDGE 867 (889)
T ss_pred -ccEEecccccccceeeecCCCCceeEe--cccCccchhheehhcCcccccCccccccceec-----cc-cceeecCCcc
Confidence 0012467888888 5888888888877 566788999999999999999998532 2222 10 1122222 67
Q ss_pred hccccccCCcchhhhc
Q 041519 503 LWESLEWDQPNAKDVL 518 (521)
Q Consensus 503 ~~~~l~~~~~~~~~~~ 518 (521)
|.+.++|++.+.+..|
T Consensus 868 ~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 868 WLEGVYWEDELTKLRF 883 (889)
T ss_pred ceeeEEehhhhhhhhc
Confidence 8899999998877655
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6e-40 Score=371.92 Aligned_cols=279 Identities=25% Similarity=0.337 Sum_probs=189.0
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhHHHH
Q 041519 5 QVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQC 84 (521)
Q Consensus 5 ~~p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~c 84 (521)
..|+++++++++||++|+|+|||++++|+.|+++ +.++|+.++++++... +++|.++|++||++|++...|.|
T Consensus 369 ~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~ 441 (1153)
T PLN03210 369 SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAI 441 (1153)
T ss_pred CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc------cHHHHHHHHHhhhccCccchhhh
Confidence 3567899999999999999999999999999995 7899999999986532 36899999999999984469999
Q ss_pred HHHHHH--------------------HhHHHHHHHHccccccccCCCccccchHHHHHHHHHhccCC------cEEEecC
Q 041519 85 FLYCAL--------------------GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMALRITSKSP------LFMVTAG 138 (521)
Q Consensus 85 fl~~s~--------------------g~~~~~~L~~~~l~~~~~~~~~~~mhdli~dl~~~i~~~~~------~~~~~~~ 138 (521)
|+|||+ .+..++.|+++|||+... ..++|||++|+||+.+++++. .+++...
T Consensus 442 Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~ 519 (1153)
T PLN03210 442 FRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAK 519 (1153)
T ss_pred hheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHH
Confidence 999998 223478999999998765 579999999999999987652 1111100
Q ss_pred ------------cccc-------------cCCCcccccCCccEEEeecCCCC-------CCCCCcCCCCCCccEEEcccC
Q 041519 139 ------------LRLL-------------KFPGEQEWEENLERVSLMENDFE-------EIPSNMSPHCEILSTLLLQHN 186 (521)
Q Consensus 139 ------------~~~~-------------~~p~~~~~~~~l~~L~l~~~~~~-------~l~~~~~~~l~~L~~L~l~~~ 186 (521)
..+. --+..+..+.+++.|.+..+... .+|.++..-..+||.|.+.++
T Consensus 520 di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~ 599 (1153)
T PLN03210 520 DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY 599 (1153)
T ss_pred HHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC
Confidence 0000 00111334556666666544321 234333211135666666666
Q ss_pred cCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCC-cCcccCcc
Q 041519 187 KYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGT-WIEEVPEG 265 (521)
Q Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~-~l~~lp~~ 265 (521)
. +..+|..+ .+.+|+.|+++++.+..+|.++..+.+|++|++++|..+..+|.++.+.+|++|++++| .+..+|..
T Consensus 600 ~-l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 600 P-LRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred C-CCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh
Confidence 5 66666654 45666677776666666666666666777777766666666666666666777777666 56666666
Q ss_pred ccCCCCCcccccccc------hHHHHhhHhcccceEEE
Q 041519 266 MEMLENLSHLSLFMA------AEEAARLSDRLDTFVGY 297 (521)
Q Consensus 266 i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~ 297 (521)
++++++|++|++..+ |..+ +++ +|+.|.+.
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~-sL~~L~Ls 712 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGI-NLK-SLYRLNLS 712 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcC-CCC-CCCEEeCC
Confidence 666666666666543 2222 455 55555543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=8.1e-20 Score=207.34 Aligned_cols=326 Identities=17% Similarity=0.235 Sum_probs=183.5
Q ss_pred CCCcccccCCccEEEeecCCCC-CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCcccc
Q 041519 144 FPGEQEWEENLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVS 221 (521)
Q Consensus 144 ~p~~~~~~~~l~~L~l~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~ 221 (521)
++.....+++++.|++++|.+. .+|..++..+++|++|++++|.....+|. +.+++|++|++++|.+. .+|..++
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHh
Confidence 3444556678888888888876 67777766788888888888874445554 45777888888888776 6777788
Q ss_pred CCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCc-ccCccccCCCCCcccccccc------hHHHHhhHhcccc
Q 041519 222 DLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIE-EVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDT 293 (521)
Q Consensus 222 ~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~ 293 (521)
.+.+|++|++++|.....+| .++++.+|++|++++|.+. .+|..++++++|++|++... +..++.++ +|+.
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~ 240 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNH 240 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC-CCCE
Confidence 88888888888876555677 7888888888888888655 57777888888888877543 56777888 8888
Q ss_pred eEEEeccccc-hhhhhhccCCCCCCcceeeeecCCCC-CCccccceeeeeeeeeecCcccccCc------cccceEEEec
Q 041519 294 FVGYFSTLND-FNIYVKSTDGRGSKNYCLLLSASGKR-GFLEVDKSVRLFACKICETEETIVLP------EDVQYLEMFG 365 (521)
Q Consensus 294 L~~~~~~~~~-~~~~~~~~~~l~~L~~l~~~~~~~~~-~~~~~~~~~~L~~L~i~~~~~~~~~p------~~L~~L~l~~ 365 (521)
|++..+.... .... ...+.+|+.+.+....... .........+|+.|.++++.....+| ++|+.|++.+
T Consensus 241 L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 241 LDLVYNNLTGPIPSS---LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred EECcCceeccccChh---HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 8776554432 1222 2234455555443221110 01112234466666666553322222 3456666555
Q ss_pred ccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcch-h-------hhhhhcccccccccCCccc
Q 041519 366 VDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEE-T-------EKELATNTIINTVTLPRLK 437 (521)
Q Consensus 366 ~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~-~-------~~~~~~~~~~~~~~f~~L~ 437 (521)
+.-... .|. .+..+++|+.|++++|.....++...... . ...+.+..+.....+++|+
T Consensus 318 n~~~~~-------------~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 318 NNFTGK-------------IPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred CccCCc-------------CCh-hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 422111 111 12345555555555443322222111000 0 0000000000112345555
Q ss_pred eeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 438 KLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 438 ~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
.|++.++.-...++. ....+++|+.|++.+|.--..+|..+.. +++|+.+++.
T Consensus 384 ~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~Ls 436 (968)
T PLN00113 384 KLILFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELPSEFTK--------LPLVYFLDIS 436 (968)
T ss_pred EEECcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECChhHhc--------CCCCCEEECc
Confidence 555555433223332 2234577777777777654456655544 3448888876
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=5.2e-19 Score=200.73 Aligned_cols=149 Identities=23% Similarity=0.360 Sum_probs=105.8
Q ss_pred ccCCccEEEeecCCCC-CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccc
Q 041519 150 WEENLERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLR 227 (521)
Q Consensus 150 ~~~~l~~L~l~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~ 227 (521)
.++++++|++++|.+. .+|..+ ..+++|++|++++|.....+|..+ +++++|++|++++|.+. .+|..++++.+|+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 3567888888887776 344444 377788888888777445666654 77888888888877766 6677777888888
Q ss_pred eeecccCCCCCccC-CccCCCCCCEEEeeCCcCc-ccCccccCCCCCcccccccc------hHHHHhhHhcccceEEEec
Q 041519 228 SLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIE-EVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFS 299 (521)
Q Consensus 228 ~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~ 299 (521)
+|++++|.....+| .++++.+|++|++++|.+. .+|..++++++|++|++..+ +..++.++ +|+.|++..+
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n 294 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDN 294 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-CcCEEECcCC
Confidence 88887776555677 6777888888888877655 56777777777777776543 55677777 7777776554
Q ss_pred cc
Q 041519 300 TL 301 (521)
Q Consensus 300 ~~ 301 (521)
..
T Consensus 295 ~l 296 (968)
T PLN00113 295 SL 296 (968)
T ss_pred ee
Confidence 43
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.6e-18 Score=197.52 Aligned_cols=300 Identities=19% Similarity=0.234 Sum_probs=199.0
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC-CCccCccccCCccccee
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS-IEVLPNSVSDLTNLRSL 229 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L 229 (521)
..++|.|.+.++.+..+|..+ ...+|+.|++.++. +..++.++ ..+++|++|+++++. +..+|. ++.+++|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~-l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSK-LEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcc-cccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence 357999999999999999886 56899999999998 88888876 889999999999875 667775 8899999999
Q ss_pred ecccCCCCCccC-CccCCCCCCEEEeeCC-cCcccCccccCCCCCcccccccch--HHH-HhhHhcccceEEEeccccch
Q 041519 230 LLRWCGILKRVP-SLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSLFMAA--EEA-ARLSDRLDTFVGYFSTLNDF 304 (521)
Q Consensus 230 ~l~~~~~l~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~~~~~--~~i-~~L~~~L~~L~~~~~~~~~~ 304 (521)
++++|..+..+| +++++.+|+.|++++| .++.+|.++ ++++|++|.+.++. ..+ ...+ +|+.|++..+....+
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~-nL~~L~L~~n~i~~l 740 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIEEF 740 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccC-CcCeeecCCCccccc
Confidence 999999999999 8999999999999999 899999877 78999999887662 111 1234 777787765554433
Q ss_pred hhhhhccCCCCCCcceeeeecC---C-----CCCCccccceeeeeeeeeecCcccccC------ccccceEEEecccCcc
Q 041519 305 NIYVKSTDGRGSKNYCLLLSAS---G-----KRGFLEVDKSVRLFACKICETEETIVL------PEDVQYLEMFGVDDVA 370 (521)
Q Consensus 305 ~~~~~~~~~l~~L~~l~~~~~~---~-----~~~~~~~~~~~~L~~L~i~~~~~~~~~------p~~L~~L~l~~~~~l~ 370 (521)
...+ .+.+|..+.+.... . ...........+|+.|.++++.....+ .++|+.|++.+|..+.
T Consensus 741 P~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 741 PSNL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccc----cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 3221 23334333322100 0 000001112246666776665322222 3456777777666544
Q ss_pred cccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhc----ccccccccCCccceeecCCccc
Q 041519 371 SLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELAT----NTIINTVTLPRLKKLHLEDLRE 446 (521)
Q Consensus 371 ~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~----~~~~~~~~f~~L~~L~l~~~~~ 446 (521)
.+| ... .+++|++|+|++|..+..++........-.+.+ ..+.....+++|+.|++.+|++
T Consensus 817 ~LP-------------~~~--~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 817 TLP-------------TGI--NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred eeC-------------CCC--CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCC
Confidence 433 222 456667777777766655443210000000000 0111224678888888888888
Q ss_pred ccccccCCCcccCCCccEEEEecCCCcccccC
Q 041519 447 FKSICSDNGVLVCNSLQEIEVYNCPKLKRLSL 478 (521)
Q Consensus 447 L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~ 478 (521)
|+.++. ....+++|+.+++.+|++|+.++.
T Consensus 882 L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 882 LQRVSL--NISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cCccCc--ccccccCCCeeecCCCcccccccC
Confidence 888877 444568888888888888876543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=4.9e-21 Score=189.70 Aligned_cols=148 Identities=23% Similarity=0.391 Sum_probs=112.7
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcC-CCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKY-LQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
++..+..++..+|.....+.++.||++.+|++..+..++. .++.||.+.+..|+. -..+|+++| .+..|.+|||++|
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs-~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS-DLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc-cchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 5555666777888888888888888888888887777665 778888888877763 245777764 6788888888888
Q ss_pred CCCccCccccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccchHH
Q 041519 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEE 283 (521)
Q Consensus 212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 283 (521)
++.+.|..+..-+++-+|++++|. +..+| + +.+|.-|-+||+++|.+..+|..+..|..|++|.+...|-.
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence 888888877777788888888764 77887 4 66778888888888888888888888888888877776544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=5.5e-20 Score=182.30 Aligned_cols=271 Identities=20% Similarity=0.276 Sum_probs=152.4
Q ss_pred cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccC
Q 041519 143 KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSD 222 (521)
Q Consensus 143 ~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~ 222 (521)
.+|.....++.++.|+++.|.+.+.|..+. .-+++-+|++++|+ +.++|..+|-++.-|-+|||++|.+..+|+.+..
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE-~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLE-YAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhh-hhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence 456666666677777777777777776664 55667777777776 7777776666777777777777777777776777
Q ss_pred CcccceeecccCCCCCccC--CccCCCCCCEEEeeCC--cCcccCccccCCCCCcccccccc-----hHHHHhhHhcccc
Q 041519 223 LTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGT--WIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDT 293 (521)
Q Consensus 223 L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~--~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~ 293 (521)
|.+|++|++++|+ +...- .+-.+.+|++|.++++ -+..+|.++..|.+|+.++++.. |..+-++. +|+.
T Consensus 172 L~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~-~Lrr 249 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR-NLRR 249 (1255)
T ss_pred HhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh-hhhe
Confidence 7777777777665 32221 2334566666666666 33466666666666666666532 55566666 6666
Q ss_pred eEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccC------ccccceEEEeccc
Q 041519 294 FVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVL------PEDVQYLEMFGVD 367 (521)
Q Consensus 294 L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~------p~~L~~L~l~~~~ 367 (521)
|+++.+.++.+....... .+|++|+++.+... .+ .+.|++|...+..
T Consensus 250 LNLS~N~iteL~~~~~~W--------------------------~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 250 LNLSGNKITELNMTEGEW--------------------------ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred eccCcCceeeeeccHHHH--------------------------hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence 665544443322111111 13333333333110 01 1233333322210
Q ss_pred CcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccc
Q 041519 368 DVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREF 447 (521)
Q Consensus 368 ~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L 447 (521)
-. ..-+|.++ +.|.+|+.+...+. +++-+|+.. +.+++|+.|.+.. ..|
T Consensus 303 ---------L~---FeGiPSGI-GKL~~Levf~aanN-~LElVPEgl----------------cRC~kL~kL~L~~-NrL 351 (1255)
T KOG0444|consen 303 ---------LT---FEGIPSGI-GKLIQLEVFHAANN-KLELVPEGL----------------CRCVKLQKLKLDH-NRL 351 (1255)
T ss_pred ---------cc---ccCCccch-hhhhhhHHHHhhcc-ccccCchhh----------------hhhHHHHHhcccc-cce
Confidence 00 12234444 55666666666543 344333322 4567777777754 556
Q ss_pred cccccCCCcccCCCccEEEEecCCCccccc
Q 041519 448 KSICSDNGVLVCNSLQEIEVYNCPKLKRLS 477 (521)
Q Consensus 448 ~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP 477 (521)
-.+|. ++..+|-|+.|++++.|+|.--|
T Consensus 352 iTLPe--aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 352 ITLPE--AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred eechh--hhhhcCCcceeeccCCcCccCCC
Confidence 66665 55556777777777777776444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=1.7e-18 Score=170.70 Aligned_cols=315 Identities=19% Similarity=0.195 Sum_probs=160.8
Q ss_pred CcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-
Q 041519 138 GLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL- 216 (521)
Q Consensus 138 ~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l- 216 (521)
.+.+..+|.......++.+|++.+|.|.++..+..+.++.||+|+++.|. +..+|..-|..-.++++|+|++|.|+.+
T Consensus 111 ~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 111 KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLE 189 (873)
T ss_pred cchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccc
Confidence 34455566555555566666666666666655544456666666666666 6666654445556666667666666644
Q ss_pred CccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hHHHHhh
Q 041519 217 PNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AEEAARL 287 (521)
Q Consensus 217 p~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~~i~~L 287 (521)
-..|..|.+|.+|.++.|. +..+| .|.+|++|+.|++..|.++.+ -..|..|.+|+.|.+... ...+-.+
T Consensus 190 ~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred cccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 2445566666666666654 66666 455566777776666655543 223555566655554322 1112334
Q ss_pred HhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCccccceEEEeccc
Q 041519 288 SDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVD 367 (521)
Q Consensus 288 ~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p~~L~~L~l~~~~ 367 (521)
. ++++|++..+.+....+ ..+-.++.|+.+.++.... +.+.+.+ -.|.+.|+.|+++..
T Consensus 269 ~-kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI-------------~rih~d~----WsftqkL~~LdLs~N- 327 (873)
T KOG4194|consen 269 E-KMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAI-------------QRIHIDS----WSFTQKLKELDLSSN- 327 (873)
T ss_pred c-ccceeecccchhhhhhc--ccccccchhhhhccchhhh-------------heeecch----hhhcccceeEecccc-
Confidence 4 55555554444332211 1122234444443332211 1111111 122344444444331
Q ss_pred Cccc-----------ccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCcc
Q 041519 368 DVAS-----------LNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRL 436 (521)
Q Consensus 368 ~l~~-----------l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L 436 (521)
.++. +..+.-+-+.++.+-...+..+.+|++|+|++.. +...++.. +....++++|
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDa------------a~~f~gl~~L 394 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDA------------AVAFNGLPSL 394 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecc------------hhhhccchhh
Confidence 0000 0000111133333444445566666777765542 22111111 1112348888
Q ss_pred ceeecCCcccccccccCCCcccCCCccEEEEecCCCcccc-cCcCcccCCCCCCCCCCceEEEee
Q 041519 437 KKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRL-SLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 437 ~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~l-P~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
++|.+.+ .+++.|+.. ....+++||.|++.+.+ +.++ |..+..+ .|++|.+.
T Consensus 395 rkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m---------~Lk~Lv~n 447 (873)
T KOG4194|consen 395 RKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNA-IASIQPNAFEPM---------ELKELVMN 447 (873)
T ss_pred hheeecC-ceeeecchh-hhccCcccceecCCCCc-ceeecccccccc---------hhhhhhhc
Confidence 8888888 678888762 22247888888888876 3444 3334332 37776654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=4.1e-17 Score=161.12 Aligned_cols=319 Identities=18% Similarity=0.208 Sum_probs=188.7
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceee
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLL 230 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~ 230 (521)
+..+.|++++|.+..+....|.++++|+.+.+.+|. ++.+|... +..-||+.|+|.+|.|.++. +++..+.-|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 466778888888887777766678888888888877 77777643 44556888888888777553 4566777788888
Q ss_pred cccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------hHHHHhhHhcccceEEEeccc
Q 041519 231 LRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 231 l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~ 301 (521)
++.|. +..+| ++-.-.++++|++++|.|+.+..+ |..+.+|..|.+... +..+.+|+ +|+.|++..+.+
T Consensus 156 LSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-KLESLDLNRNRI 233 (873)
T ss_pred hhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcc-hhhhhhccccce
Confidence 88764 77776 566667788888888877766543 566666666666543 44566677 788777755544
Q ss_pred cch-hhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc-----c-CccccceEEEecc--------
Q 041519 302 NDF-NIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI-----V-LPEDVQYLEMFGV-------- 366 (521)
Q Consensus 302 ~~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~-----~-~p~~L~~L~l~~~-------- 366 (521)
.-. .-.+..++++++|+.-...+....... .-.+.+++.+++..+.... . -...|+.|+++..
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcc--eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 332 122233333443333222211111111 1112234444444331110 0 1234555555431
Q ss_pred --cCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCc
Q 041519 367 --DDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDL 444 (521)
Q Consensus 367 --~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 444 (521)
..-+.+..+--+++.++.++.+.+..|..|++|.|+.. .+..+.+.. ..++.+|++|++++
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~a---------------f~~lssL~~LdLr~- 374 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGA---------------FVGLSSLHKLDLRS- 374 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhH---------------HHHhhhhhhhcCcC-
Confidence 11111222233445666666666667777777777654 344443222 13578899999987
Q ss_pred ccccccccCCCccc---CCCccEEEEecCCCcccccC-cCcccCCCCCCCCCCceEEEeehhh
Q 041519 445 REFKSICSDNGVLV---CNSLQEIEVYNCPKLKRLSL-SLPLLDNGQPSPPPALEVIEIKKEL 503 (521)
Q Consensus 445 ~~L~~~~~~~~~~~---~p~L~~L~i~~C~~L~~lP~-~~~~l~~~~~~~~~~L~~l~~~~~~ 503 (521)
..+ +|+.++++.. +|+|++|.+.|. +++.+|. .+..+.+ |+.|++....
T Consensus 375 N~l-s~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~--------LE~LdL~~Na 427 (873)
T KOG4194|consen 375 NEL-SWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEA--------LEHLDLGDNA 427 (873)
T ss_pred CeE-EEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcc--------cceecCCCCc
Confidence 333 4555545443 589999999985 6999998 4555544 8888876333
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-16 Score=134.76 Aligned_cols=155 Identities=23% Similarity=0.327 Sum_probs=134.1
Q ss_pred ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccc
Q 041519 148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLR 227 (521)
Q Consensus 148 ~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 227 (521)
...++++++|.+++|++..+|+.+. ++.+|++|++.+|+ ++.+|.++ +.++.||.|+++-|.+..+|..||.++-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia-~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHH-Hhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhh
Confidence 3456789999999999999999986 89999999999998 99999987 899999999999999999999999999999
Q ss_pred eeecccCCC-CCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHhhHhcccceEEEecc
Q 041519 228 SLLLRWCGI-LKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFST 300 (521)
Q Consensus 228 ~L~l~~~~~-l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~ 300 (521)
.||+.+|.. -..+| .+..+.-|+.|+++.|.++.+|..++++++|+.|.+.+. |++++.++ +|++|++..+.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt-~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLT-RLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHH-HHHHHhcccce
Confidence 999988652 23678 788899999999999999999999999999998877543 89999999 99999887776
Q ss_pred ccchhh
Q 041519 301 LNDFNI 306 (521)
Q Consensus 301 ~~~~~~ 306 (521)
+.-+..
T Consensus 185 l~vlpp 190 (264)
T KOG0617|consen 185 LTVLPP 190 (264)
T ss_pred eeecCh
Confidence 654433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=2.9e-17 Score=155.52 Aligned_cols=137 Identities=31% Similarity=0.394 Sum_probs=99.2
Q ss_pred CcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC
Q 041519 138 GLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP 217 (521)
Q Consensus 138 ~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp 217 (521)
++.+.+.|...-.++.+.+++...|-+..+|++++ .+.+|.-|++..|+ +..+|. |+++..|+.|.++.|.++.+|
T Consensus 169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg-~l~~L~~LyL~~Nk-i~~lPe--f~gcs~L~Elh~g~N~i~~lp 244 (565)
T KOG0472|consen 169 GNKLKALPENHIAMKRLKHLDCNSNLLETLPPELG-GLESLELLYLRRNK-IRFLPE--FPGCSLLKELHVGENQIEMLP 244 (565)
T ss_pred ccchhhCCHHHHHHHHHHhcccchhhhhcCChhhc-chhhhHHHHhhhcc-cccCCC--CCccHHHHHHHhcccHHHhhH
Confidence 33444555444446677777777777777777776 67777777777777 777774 577777777777777777777
Q ss_pred cccc-CCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519 218 NSVS-DLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 218 ~~i~-~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 280 (521)
.+.+ +|.++.+||++.|+ +++.| .+..+++|.+||+++|.++.+|.++|+| .|+.|.+.+.
T Consensus 245 ae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred HHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence 7766 77778888888765 78888 7777888888888888888888877777 6777766554
No 12
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.53 E-value=1.1e-14 Score=158.70 Aligned_cols=309 Identities=20% Similarity=0.231 Sum_probs=187.1
Q ss_pred cccccCCCcccccCCccEEEeecCC--CCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519 139 LRLLKFPGEQEWEENLERVSLMEND--FEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216 (521)
Q Consensus 139 ~~~~~~p~~~~~~~~l~~L~l~~~~--~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l 216 (521)
+....++..... ++++.|-+..|. +..++..+|..++.||+|++++|.....+|.++ +.+-+||||+++++.+..+
T Consensus 533 ~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 533 NKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHL 610 (889)
T ss_pred cchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcccc
Confidence 333444444333 379999999996 788888888899999999999999899999997 9999999999999999999
Q ss_pred CccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-------hHHHHhhH
Q 041519 217 PNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-------AEEAARLS 288 (521)
Q Consensus 217 p~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-------~~~i~~L~ 288 (521)
|.++++|..|.+|++..+..+..+| ....|.+|++|.+.......-...++.+.+|++|....+ ...+..+.
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 9999999999999999988777888 566699999999988753322223455556666655433 13444455
Q ss_pred hcccceEEEecc-ccchhhhhhccCCCCCCcceeeeecCCCCC---C---ccccc-eeeeeeeeeecC-----cccccCc
Q 041519 289 DRLDTFVGYFST-LNDFNIYVKSTDGRGSKNYCLLLSASGKRG---F---LEVDK-SVRLFACKICET-----EETIVLP 355 (521)
Q Consensus 289 ~~L~~L~~~~~~-~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~---~---~~~~~-~~~L~~L~i~~~-----~~~~~~p 355 (521)
+|.++...... .............+.+|+.+.+........ . ..... ..++..+.+... .....+|
T Consensus 691 -~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~ 769 (889)
T KOG4658|consen 691 -RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFA 769 (889)
T ss_pred -HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhcc
Confidence 55544322221 011222233344566666666642211100 0 00010 112333333222 1223578
Q ss_pred cccceEEEecccCcccccccccCCCcccccccchhhccCCCcEE-EEecccchhhhhccCcchhhhhhhcccccccccCC
Q 041519 356 EDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVL-AVGYCFLIEEIVAVEDEETEKELATNTIINTVTLP 434 (521)
Q Consensus 356 ~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L-~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~ 434 (521)
++|+.|.+..|..+..+.........+.. .. ..+.++..+ .+.+...+..+... ...|+
T Consensus 770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~---~i-~~f~~~~~l~~~~~l~~l~~i~~~----------------~l~~~ 829 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIPKLKALLELKE---LI-LPFNKLEGLRMLCSLGGLPQLYWL----------------PLSFL 829 (889)
T ss_pred CcccEEEEecccccccCCCHHHHhhhccc---EE-ecccccccceeeecCCCCceeEec----------------ccCcc
Confidence 99999999999875543221111111110 00 011222222 12222222222111 02345
Q ss_pred ccceeecCCcccccccccCCCcccCCCccEEEEecC-CCcccccCc
Q 041519 435 RLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNC-PKLKRLSLS 479 (521)
Q Consensus 435 ~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C-~~L~~lP~~ 479 (521)
+|+.+.+..||++.. +|.+.++.+.+| +++..+|..
T Consensus 830 ~l~~~~ve~~p~l~~---------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 830 KLEELIVEECPKLGK---------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred chhheehhcCccccc---------CccccccceeccccceeecCCc
Confidence 566666666555543 477888999997 999999986
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=1.3e-15 Score=128.40 Aligned_cols=150 Identities=28% Similarity=0.367 Sum_probs=135.0
Q ss_pred EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519 135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214 (521)
Q Consensus 135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 214 (521)
+.+.+++..+|.....+.+++.|.+.+|+++++|..+. .+++||.|++.-|. +..+|.+| +.++.|.+||+++|++.
T Consensus 39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is-sl~klr~lnvgmnr-l~~lprgf-gs~p~levldltynnl~ 115 (264)
T KOG0617|consen 39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS-SLPKLRILNVGMNR-LNILPRGF-GSFPALEVLDLTYNNLN 115 (264)
T ss_pred hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh-hchhhhheecchhh-hhcCcccc-CCCchhhhhhccccccc
Confidence 34556677788888888999999999999999999987 89999999999998 88899886 99999999999999877
Q ss_pred --ccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHh
Q 041519 215 --VLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAAR 286 (521)
Q Consensus 215 --~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~ 286 (521)
.+|..|..+..|+.|.+++|. ++.+| .++++.+||.|.++.|.+-++|..++.++.|++|++.+. |.++++
T Consensus 116 e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 789999999999999999976 89999 999999999999999999999999999999999988654 677776
Q ss_pred hH
Q 041519 287 LS 288 (521)
Q Consensus 287 L~ 288 (521)
+.
T Consensus 195 l~ 196 (264)
T KOG0617|consen 195 LD 196 (264)
T ss_pred hh
Confidence 65
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=5.7e-16 Score=146.79 Aligned_cols=256 Identities=25% Similarity=0.310 Sum_probs=163.0
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 231 (521)
..+..+.+++|.++.+.++.. .+..+.+|.+.+|+ ...+|+.+ +.+..++.++.++|++..+|..++.+.+|+.|+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~-nL~~l~vl~~~~n~-l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLK-NLACLTVLNVHDNK-LSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhccHhhh-cccceeEEEeccch-hhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 356667777787777777665 77778888888887 77777776 7778888888888888888888888888888888
Q ss_pred ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHhhHhcccceEEEeccccchh
Q 041519 232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFSTLNDFN 305 (521)
Q Consensus 232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~~~~~~ 305 (521)
+.|. +..+| +++.+..|..++..+|.+..+|.+++.+.+|..|.+... +...-+++ .|++|++..+.++.+.
T Consensus 122 s~n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~-~L~~ld~~~N~L~tlP 199 (565)
T KOG0472|consen 122 SSNE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMK-RLKHLDCNSNLLETLP 199 (565)
T ss_pred cccc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHH-HHHhcccchhhhhcCC
Confidence 8765 77777 788888888888888888888888877777777766533 44444477 8888876555444444
Q ss_pred hhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCc--cccceEEEecccCcccccccccCCCccc
Q 041519 306 IYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLP--EDVQYLEMFGVDDVASLNDVLPREQGLN 383 (521)
Q Consensus 306 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p--~~L~~L~l~~~~~l~~l~~~~~~~~~l~ 383 (521)
..+.. +.+|..+.+. .-.|..-+ .|| ..|++|++. -+.++
T Consensus 200 ~~lg~---l~~L~~LyL~------------------~Nki~~lP---ef~gcs~L~Elh~g--------------~N~i~ 241 (565)
T KOG0472|consen 200 PELGG---LESLELLYLR------------------RNKIRFLP---EFPGCSLLKELHVG--------------ENQIE 241 (565)
T ss_pred hhhcc---hhhhHHHHhh------------------hcccccCC---CCCccHHHHHHHhc--------------ccHHH
Confidence 43332 2222222111 00000000 111 123333222 13445
Q ss_pred ccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCcc
Q 041519 384 LFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQ 463 (521)
Q Consensus 384 ~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~ 463 (521)
.+|...+.+|++|.+|++++. ++++.|... ..+.+|++|++++ ..+..++. ....+ .|+
T Consensus 242 ~lpae~~~~L~~l~vLDLRdN-klke~Pde~----------------clLrsL~rLDlSN-N~is~Lp~--sLgnl-hL~ 300 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI----------------CLLRSLERLDLSN-NDISSLPY--SLGNL-HLK 300 (565)
T ss_pred hhHHHHhcccccceeeecccc-ccccCchHH----------------HHhhhhhhhcccC-CccccCCc--ccccc-eee
Confidence 566666677788888888765 566665443 4567777888777 45666665 22233 566
Q ss_pred EEEEecCC
Q 041519 464 EIEVYNCP 471 (521)
Q Consensus 464 ~L~i~~C~ 471 (521)
.|.+.|.|
T Consensus 301 ~L~leGNP 308 (565)
T KOG0472|consen 301 FLALEGNP 308 (565)
T ss_pred ehhhcCCc
Confidence 77777766
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=3.2e-13 Score=145.06 Aligned_cols=112 Identities=28% Similarity=0.438 Sum_probs=68.6
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR 232 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 232 (521)
+...|.+.++.++.+|..+. ++++.|++++|+ +..+|..++ .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N~-LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP---EQITTLILDNNE-LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCcccc---cCCcEEEecCCC-CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 45566666666666666543 456677777765 666666542 466777777777666665443 356777777
Q ss_pred cCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccc
Q 041519 233 WCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLF 278 (521)
Q Consensus 233 ~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~ 278 (521)
+|. +..+| .+. .+|+.|++++|+++.+|..+. .+|++|++.
T Consensus 250 ~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 250 INR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVY 291 (754)
T ss_pred CCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECC
Confidence 764 66666 443 467777777666666665442 345554443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=3.6e-12 Score=136.26 Aligned_cols=263 Identities=17% Similarity=0.184 Sum_probs=150.4
Q ss_pred cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
..+..++..+..+|.... .+++.|++..|.++.+|.. .++|++|++++|+ +..+|. ..++|+.|++++|
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~-LtsLP~----lp~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCc-cCcccC----cccccceeeccCC
Confidence 344555666777776432 4788888888888887753 4678888888886 777764 2467788888888
Q ss_pred CCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-hHHHHhhHhc
Q 041519 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-AEEAARLSDR 290 (521)
Q Consensus 212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-~~~i~~L~~~ 290 (521)
.+..+|... .+|+.|++++|. +..+|.. +.+|+.|++++|.++.+|.... +|+.|.+..+ ...+..+..+
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~--p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~Ls~N~L~~LP~lp~~ 343 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSLPTLPSG 343 (788)
T ss_pred chhhhhhch---hhcCEEECcCCc-ccccccc--ccccceeECCCCccccCCCCcc---cccccccccCccccccccccc
Confidence 877777532 457778888874 7777731 3678888888888777765332 3444433322 0011111114
Q ss_pred ccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc--ccCccccceEEEecccC
Q 041519 291 LDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET--IVLPEDVQYLEMFGVDD 368 (521)
Q Consensus 291 L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~--~~~p~~L~~L~l~~~~~ 368 (521)
|+.|+++.+.+..+... ..+|+.|.++.+... ...|.+|+.|+++++
T Consensus 344 Lq~LdLS~N~Ls~LP~l-----------------------------p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N-- 392 (788)
T PRK15387 344 LQELSVSDNQLASLPTL-----------------------------PSELYKLWAYNNRLTSLPALPSGLKELIVSGN-- 392 (788)
T ss_pred cceEecCCCccCCCCCC-----------------------------CcccceehhhccccccCcccccccceEEecCC--
Confidence 55555544333221110 012223333322111 012345677766553
Q ss_pred cccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccc
Q 041519 369 VASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFK 448 (521)
Q Consensus 369 l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~ 448 (521)
.+..+|. ..++|+.|+++++. +..+|. .+.+|+.|++.+ .+++
T Consensus 393 ------------~Lt~LP~----l~s~L~~LdLS~N~-LssIP~-------------------l~~~L~~L~Ls~-NqLt 435 (788)
T PRK15387 393 ------------RLTSLPV----LPSELKELMVSGNR-LTSLPM-------------------LPSGLLSLSVYR-NQLT 435 (788)
T ss_pred ------------cccCCCC----cccCCCEEEccCCc-CCCCCc-------------------chhhhhhhhhcc-Cccc
Confidence 1222221 12467888887763 444431 235677888877 5577
Q ss_pred ccccCCCcccCCCccEEEEecCCCcccccCcCcccC
Q 041519 449 SICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLD 484 (521)
Q Consensus 449 ~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~ 484 (521)
.+|. ....+++|+.|++++++-=...|..+..+.
T Consensus 436 ~LP~--sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 436 RLPE--SLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred ccCh--HHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 7766 455678888888888874333444444433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=2.6e-12 Score=138.07 Aligned_cols=120 Identities=24% Similarity=0.371 Sum_probs=99.2
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|... .+.++.|++.+|.++.+|..++ ++|++|++++|. +..+|..+ ..+|+.|++++|.
T Consensus 182 ~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~ 252 (754)
T PRK15370 182 ELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINR 252 (754)
T ss_pred EEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCc-cccCChhh---hccccEEECcCCc
Confidence 4445566777777643 4689999999999999998765 589999999998 88899865 3579999999999
Q ss_pred CCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccc
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGM 266 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i 266 (521)
+..+|..+. .+|++|++++|. +..+| .+. .+|++|++++|+++.+|..+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l 302 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHL 302 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccc
Confidence 999998765 489999999875 88899 664 58999999999999888654
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=2.2e-13 Score=141.86 Aligned_cols=95 Identities=23% Similarity=0.329 Sum_probs=55.3
Q ss_pred cCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519 137 AGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216 (521)
Q Consensus 137 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l 216 (521)
.++.+...|.......+++.|.++.|.+..+|.... ++++|.+|.+.+|. ...+|.++ ..+++|++|++++|.+..+
T Consensus 53 snn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~-~~~~l~~lnL~~n~-l~~lP~~~-~~lknl~~LdlS~N~f~~~ 129 (1081)
T KOG0618|consen 53 SNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCS-NMRNLQYLNLKNNR-LQSLPASI-SELKNLQYLDLSFNHFGPI 129 (1081)
T ss_pred cccccccCCchhhhHHHHhhcccchhhHhhCchhhh-hhhcchhheeccch-hhcCchhH-HhhhcccccccchhccCCC
Confidence 344445555555555566666666666666664443 56666666666665 56666654 5666666666666666666
Q ss_pred CccccCCcccceeecccC
Q 041519 217 PNSVSDLTNLRSLLLRWC 234 (521)
Q Consensus 217 p~~i~~L~~L~~L~l~~~ 234 (521)
|..+..+..+..++.++|
T Consensus 130 Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 130 PLVIEVLTAEEELAASNN 147 (1081)
T ss_pred chhHHhhhHHHHHhhhcc
Confidence 655555555555555544
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=2.7e-12 Score=133.98 Aligned_cols=100 Identities=27% Similarity=0.419 Sum_probs=56.2
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeeccc
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRW 233 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 233 (521)
+..|++++|.+..+|..+. .+.+|+.|.++.|. +..+|.+. +++.+|++|.|.+|.+..+|.++..+++|++|++++
T Consensus 47 L~~l~lsnn~~~~fp~~it-~l~~L~~ln~s~n~-i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQIT-LLSHLRQLNLSRNY-IRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccccCCchhh-hHHHHhhcccchhh-HhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 5555555555555555544 45555555555554 55555443 555555555555555555555555555555565555
Q ss_pred CCCCCccC-CccCCCCCCEEEeeCC
Q 041519 234 CGILKRVP-SLAKLLALQYLDLEGT 257 (521)
Q Consensus 234 ~~~l~~lp-~~~~l~~L~~L~l~~~ 257 (521)
|. +..+| -+..+..+..+..++|
T Consensus 124 N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 124 NH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hc-cCCCchhHHhhhHHHHHhhhcc
Confidence 43 55555 4555555555555555
No 20
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.18 E-value=9.9e-12 Score=121.05 Aligned_cols=99 Identities=35% Similarity=0.677 Sum_probs=77.3
Q ss_pred ChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhHHHHHH
Q 041519 7 PALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFL 86 (521)
Q Consensus 7 p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cfl 86 (521)
++.+++++++|+++|+|+|||++++|++|+.+.+..+|+.+++++........+....+..++.+||+.|| .++|+||+
T Consensus 178 ~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~~f~ 256 (287)
T PF00931_consen 178 PEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLP-DELRRCFL 256 (287)
T ss_dssp -TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSH-TCCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCC-ccHHHHHh
Confidence 45667899999999999999999999999766578899999998866654332346899999999999999 79999999
Q ss_pred HHHH--------HhHHHHHHHHcccccc
Q 041519 87 YCAL--------GHTILNRLVNCCLLES 106 (521)
Q Consensus 87 ~~s~--------g~~~~~~L~~~~l~~~ 106 (521)
|||+ .+..+.-++..++++.
T Consensus 257 ~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 257 YLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred hCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9998 3444555555555543
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.15 E-value=2.8e-10 Score=121.96 Aligned_cols=226 Identities=20% Similarity=0.185 Sum_probs=143.8
Q ss_pred EEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCC
Q 041519 134 MVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSI 213 (521)
Q Consensus 134 ~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 213 (521)
+...++.+..+|. .++++++|++.+|.++.+|.. .++|+.|++++|. +..+|.. +..|+.|++++|.+
T Consensus 227 L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~-L~~Lp~l----p~~L~~L~Ls~N~L 294 (788)
T PRK15387 227 LVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNP-LTHLPAL----PSGLCKLWIFGNQL 294 (788)
T ss_pred EEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc----ccccceeeccCCc-hhhhhhc----hhhcCEEECcCCcc
Confidence 3444566777775 357899999999999999853 3688999999987 7777752 35688899999999
Q ss_pred CccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccch-HHHHh-hHhcc
Q 041519 214 EVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAA-EEAAR-LSDRL 291 (521)
Q Consensus 214 ~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~-~~i~~-L~~~L 291 (521)
+.+|.. +.+|++|++++|. +..+|.+ ..+|+.|++++|.+..+|.. ..+|++|++.... ..+.. .. +|
T Consensus 295 t~LP~~---p~~L~~LdLS~N~-L~~Lp~l--p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~lp~-~L 364 (788)
T PRK15387 295 TSLPVL---PPGLQELSVSDNQ-LASLPAL--PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTLPS-EL 364 (788)
T ss_pred cccccc---ccccceeECCCCc-cccCCCC--cccccccccccCcccccccc---ccccceEecCCCccCCCCCCCc-cc
Confidence 888863 4679999999985 7778732 23577788888888887752 2467777776540 00000 12 34
Q ss_pred cceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc--cCccccceEEEecccCc
Q 041519 292 DTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI--VLPEDVQYLEMFGVDDV 369 (521)
Q Consensus 292 ~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~--~~p~~L~~L~l~~~~~l 369 (521)
+.|.+..+.+..+.. ...+|+.|.++++.... ..|..|+.|+++++.
T Consensus 365 ~~L~Ls~N~L~~LP~-----------------------------l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~-- 413 (788)
T PRK15387 365 YKLWAYNNRLTSLPA-----------------------------LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR-- 413 (788)
T ss_pred ceehhhccccccCcc-----------------------------cccccceEEecCCcccCCCCcccCCCEEEccCCc--
Confidence 444333222211110 01145556665553321 124678888887742
Q ss_pred ccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcc
Q 041519 370 ASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLR 445 (521)
Q Consensus 370 ~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 445 (521)
+..+|. ...+|+.|+++++ .+..+|... ..+++|+.|++.+.+
T Consensus 414 ------------LssIP~----l~~~L~~L~Ls~N-qLt~LP~sl----------------~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 414 ------------LTSLPM----LPSGLLSLSVYRN-QLTRLPESL----------------IHLSSETTVNLEGNP 456 (788)
T ss_pred ------------CCCCCc----chhhhhhhhhccC-cccccChHH----------------hhccCCCeEECCCCC
Confidence 222332 1246788888876 456665433 468999999999854
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=1.1e-11 Score=117.77 Aligned_cols=143 Identities=23% Similarity=0.268 Sum_probs=119.8
Q ss_pred cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC-
Q 041519 132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH- 210 (521)
Q Consensus 132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~- 210 (521)
.....++..+..+|.. ..+....+.+..|.|+.+|+..|..+++||.|+++.|. ++.|.+..|.+++.|-.|-+.+
T Consensus 49 ~~VdCr~~GL~eVP~~--LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPAN--LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcccCccc--CCCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcC
Confidence 3455677778888764 34578899999999999999999999999999999998 8888888789999888777666
Q ss_pred CCCCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccc
Q 041519 211 TSIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLF 278 (521)
Q Consensus 211 ~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~ 278 (521)
|+|+.+|+ .|+.|..|+-|.+.-|. +.-++ .+..|.+|..|.+..|.+..++. .+..+.+++++.+-
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 88999985 56799999999998876 66665 68999999999999999998888 57788888887664
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.94 E-value=7.9e-11 Score=112.18 Aligned_cols=120 Identities=28% Similarity=0.429 Sum_probs=99.4
Q ss_pred EEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeecccCC
Q 041519 157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLRWCG 235 (521)
Q Consensus 157 L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 235 (521)
.+-++..+..+|.++. .....+.++.|+ ++.+|+..|+.+++||.|||++|.|+.+ |.+|..|.+|-.|-+.++.
T Consensus 51 VdCr~~GL~eVP~~LP---~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP---PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcccCC---CcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 3445566788888776 467788999998 9999999999999999999999999966 8899999999888888866
Q ss_pred CCCccC--CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc
Q 041519 236 ILKRVP--SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA 280 (521)
Q Consensus 236 ~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~ 280 (521)
+++++| .++.|..|+.|.+.-|.+.-++. .+..|.+|+.|.+++.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence 799999 59999999999999887775544 3666777777776654
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2.4e-09 Score=94.33 Aligned_cols=105 Identities=26% Similarity=0.394 Sum_probs=43.3
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcccc-CCcccceeec
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVS-DLTNLRSLLL 231 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l 231 (521)
+++.|++++|.++.+. .+...+.+|++|++++|. +..+.. +..+++|+.|++++|.++.+...+. .+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 6799999999998874 344467899999999998 888875 5789999999999999998876553 6899999999
Q ss_pred ccCCCCCccC---CccCCCCCCEEEeeCCcCccc
Q 041519 232 RWCGILKRVP---SLAKLLALQYLDLEGTWIEEV 262 (521)
Q Consensus 232 ~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~l 262 (521)
++|. +..+. .+..+++|+.|++.+|.+...
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCcccch
Confidence 9875 77665 467889999999999876644
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=7.5e-10 Score=110.26 Aligned_cols=135 Identities=27% Similarity=0.364 Sum_probs=118.0
Q ss_pred ccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc
Q 041519 140 RLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS 219 (521)
Q Consensus 140 ~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~ 219 (521)
.++.+|.....+..++.++++.|.++.+|..++ .| -|++|.+++|+ ++.+|+.+ +....|..||.+.|.+..+|..
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~l-pLkvli~sNNk-l~~lp~~i-g~~~tl~~ld~s~nei~slpsq 184 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC-DL-PLKVLIVSNNK-LTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQ 184 (722)
T ss_pred cceecchhhhhhhHHHHhhhccchhhcCChhhh-cC-cceeEEEecCc-cccCCccc-ccchhHHHhhhhhhhhhhchHH
Confidence 456677778888899999999999999998886 55 48999999998 89999987 7889999999999999999999
Q ss_pred ccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519 220 VSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 220 i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 280 (521)
++.+..|+.|+++.|. +..+| .++ --.|..||++.|++..+|-.|.+|+.|++|.+...
T Consensus 185 l~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred hhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence 9999999999999976 88888 777 55789999999999999999999999999988765
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=2e-08 Score=88.51 Aligned_cols=137 Identities=23% Similarity=0.242 Sum_probs=54.0
Q ss_pred chHHHHHHHHHhccCCcEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchh
Q 041519 116 HDLIRDMALRITSKSPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPEC 195 (521)
Q Consensus 116 hdli~dl~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 195 (521)
|+++++.+..........+...+..+..+......+.+++.|++++|.+..+.. + +.++.|++|++++|. +..+.+.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-l-~~L~~L~~L~L~~N~-I~~i~~~ 82 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG-L-PGLPRLKTLDLSNNR-ISSISEG 82 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHH
T ss_pred ccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC-c-cChhhhhhcccCCCC-CCccccc
Confidence 344444444333222333445566666665444456789999999999999864 3 478999999999999 8888766
Q ss_pred HhhCCCCCcEEEccCCCCCccC--ccccCCcccceeecccCCCCCccCC-----ccCCCCCCEEEeeC
Q 041519 196 FFVHMHGLKVLNLCHTSIEVLP--NSVSDLTNLRSLLLRWCGILKRVPS-----LAKLLALQYLDLEG 256 (521)
Q Consensus 196 ~~~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~ 256 (521)
+...+++|+.|++++|.+..+- ..+..+++|++|++.+|+ +...+. +..+++|+.||-..
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 5457999999999999987543 456789999999999997 555442 56677777776544
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.65 E-value=7.5e-10 Score=110.24 Aligned_cols=121 Identities=27% Similarity=0.474 Sum_probs=77.1
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 231 (521)
......+++.|++..+|..+. .|-.|+.+.+..|. +..+|..+ +++..|.+|+|+.|+++.+|..++.|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~elp~~~~-~f~~Le~liLy~n~-~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEAC-AFVSLESLILYHNC-IRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccccCchHHH-HHHHHHHHHHHhcc-ceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 344556666777777766654 55666666666665 66666665 666666666666666666666666554 666666
Q ss_pred ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCccccc
Q 041519 232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL 277 (521)
Q Consensus 232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 277 (521)
++|+ ++.+| .++.+..|..||.+.|.+..+|..++.+.+|+.|.+
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 6653 66666 666666666666666666666666666666666544
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=4.2e-09 Score=97.10 Aligned_cols=124 Identities=23% Similarity=0.316 Sum_probs=100.9
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 231 (521)
..++.+++++|.++.+..+.. -.+++|+|++++|. +..+.. +..+.+|..|||++|.+.++-..-.+|-|.++|.+
T Consensus 284 q~LtelDLS~N~I~~iDESvK-L~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVK-LAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhhh-hccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 467888999999988877764 56899999999998 766665 47889999999999988877665568888999999
Q ss_pred ccCCCCCccCCccCCCCCCEEEeeCCcCcccC--ccccCCCCCcccccccc
Q 041519 232 RWCGILKRVPSLAKLLALQYLDLEGTWIEEVP--EGMEMLENLSHLSLFMA 280 (521)
Q Consensus 232 ~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~ 280 (521)
++|. ++.+..+++|.+|..||+++|++.++. .+||+|..|.++.+.+.
T Consensus 360 a~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 360 AQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 9975 888888999999999999999888664 35788888877776654
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.57 E-value=1.1e-08 Score=101.04 Aligned_cols=106 Identities=26% Similarity=0.252 Sum_probs=48.9
Q ss_pred CCccEEEeecCCCC-----CCCCCcCCCCCCccEEEcccCcCCCCCc------hhHhhCCCCCcEEEccCCCCC-ccCcc
Q 041519 152 ENLERVSLMENDFE-----EIPSNMSPHCEILSTLLLQHNKYLQRIP------ECFFVHMHGLKVLNLCHTSIE-VLPNS 219 (521)
Q Consensus 152 ~~l~~L~l~~~~~~-----~l~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~L~~~~l~-~lp~~ 219 (521)
..++.+.+.++.+. .++..+. ..++++.++++++. +...+ ...+..+++|+.|++++|.+. ..+..
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 34566666666552 1222222 44456666665554 22111 112345556666666665554 22333
Q ss_pred ccCCcc---cceeecccCCCCC-----ccC-CccCC-CCCCEEEeeCCcCc
Q 041519 220 VSDLTN---LRSLLLRWCGILK-----RVP-SLAKL-LALQYLDLEGTWIE 260 (521)
Q Consensus 220 i~~L~~---L~~L~l~~~~~l~-----~lp-~~~~l-~~L~~L~l~~~~l~ 260 (521)
+..+.+ |++|++++|. +. .+. .+..+ .+|+.|++++|.++
T Consensus 101 ~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 333333 6666666554 32 111 23344 55566666665444
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=9.2e-08 Score=69.12 Aligned_cols=57 Identities=35% Similarity=0.499 Sum_probs=27.8
Q ss_pred CccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccC
Q 041519 177 ILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWC 234 (521)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~ 234 (521)
+|++|++++|+ +..+|...|..+++|++|++++|.++.+| ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34455555544 44444444455555555555555554432 33445555555555544
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=4.6e-08 Score=90.32 Aligned_cols=120 Identities=26% Similarity=0.230 Sum_probs=68.0
Q ss_pred CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEe
Q 041519 176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDL 254 (521)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l 254 (521)
..|+.+++++|. ++.+..++ +-.+.+|+|++++|.+..+-. +..|++|+.||+++|. +..+- .-.+|-+.++|.+
T Consensus 284 q~LtelDLS~N~-I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccc-hhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 455666666665 66665554 556666666666666554433 5566666666666654 55554 3345556666666
Q ss_pred eCCcCcccCccccCCCCCcccccccc-------hHHHHhhHhcccceEEEeccc
Q 041519 255 EGTWIEEVPEGMEMLENLSHLSLFMA-------AEEAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 255 ~~~~l~~lp~~i~~l~~L~~L~~~~~-------~~~i~~L~~~L~~L~~~~~~~ 301 (521)
.+|.+..+ .++++|-+|..|++... ..+||+|+ .|+++.+..+.+
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPL 411 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCc
Confidence 66655554 24555555565555433 34455555 555555444433
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.2e-07 Score=67.14 Aligned_cols=59 Identities=34% Similarity=0.495 Sum_probs=37.2
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
++++|++++|.+..+|...+..+++|++|++++|. +..+++..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666666666566666666666665 566665555666666666666654
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.37 E-value=2.2e-07 Score=91.80 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=64.9
Q ss_pred CCccEEEeecCCCCCCCCCcCCCC---CCccEEEcccCcCCCC-----CchhHhhCC-CCCcEEEccCCCCC-----ccC
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHC---EILSTLLLQHNKYLQR-----IPECFFVHM-HGLKVLNLCHTSIE-----VLP 217 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l---~~L~~L~l~~~~~~~~-----~~~~~~~~l-~~L~~L~L~~~~l~-----~lp 217 (521)
++++.|++.++.+.......+..+ ++|+.|++++|. +.. +... +..+ ++|+.|++++|.++ .++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 466666666666543221111122 336777776665 331 1112 2344 66677777766655 233
Q ss_pred ccccCCcccceeecccCCCCC-----ccC-CccCCCCCCEEEeeCCcCc-----ccCccccCCCCCcccccccc
Q 041519 218 NSVSDLTNLRSLLLRWCGILK-----RVP-SLAKLLALQYLDLEGTWIE-----EVPEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 218 ~~i~~L~~L~~L~l~~~~~l~-----~lp-~~~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~~~~~ 280 (521)
..+..+.+|++|++++|. +. .++ .+..+.+|++|++++|.+. .++..+..+++|++|++..+
T Consensus 159 ~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 159 KALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 344455567777776654 33 222 3444556777777666553 22333444555666655543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=2.5e-07 Score=94.38 Aligned_cols=143 Identities=31% Similarity=0.390 Sum_probs=84.1
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCC-CccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCE-ILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL 230 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 230 (521)
+.++.+++.++.+..++.... ..+ +|+.|++++|. +..+|..+ +.++.|+.|++++|.+..+|...+.+.+|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N~-i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDNK-IESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccc-cchhhcccccccccc-hhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 456666666666666666543 332 66666666666 66665333 566666666666666666666555666666666
Q ss_pred cccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHhhHhcccceEEEec
Q 041519 231 LRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFS 299 (521)
Q Consensus 231 l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~ 299 (521)
+++|. +..+| .++.+..|++|.++++.+...+..+.++.++..+.+... +..++.+. .+++|++..+
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~-~l~~L~~s~n 265 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS-NLETLDLSNN 265 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc-ccceeccccc
Confidence 66654 66666 445555666666666655555555555555555543322 24455555 5555554433
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=2.2e-07 Score=94.87 Aligned_cols=165 Identities=25% Similarity=0.309 Sum_probs=136.3
Q ss_pred cEEEecCcccccCCCcccccC-CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC
Q 041519 132 LFMVTAGLRLLKFPGEQEWEE-NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210 (521)
Q Consensus 132 ~~~~~~~~~~~~~p~~~~~~~-~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 210 (521)
......+..+..++....... +++.|++..|.+..+|.... .+++|+.|++.+|+ +..+|... +..+.|+.|++++
T Consensus 119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~-l~~l~~~~-~~~~~L~~L~ls~ 195 (394)
T COG4886 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFND-LSDLPKLL-SNLSNLNNLDLSG 195 (394)
T ss_pred eEEecCCcccccCccccccchhhcccccccccchhhhhhhhh-ccccccccccCCch-hhhhhhhh-hhhhhhhheeccC
Confidence 344556667778888777774 99999999999999975555 89999999999999 88998864 5899999999999
Q ss_pred CCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHH
Q 041519 211 TSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAA 285 (521)
Q Consensus 211 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~ 285 (521)
|.+..+|..+..+.+|++|.+++|. ....+ .+.++.++..+.+.++.+..++..++.+.+++.|++... ...++
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~ 274 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLG 274 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccccc
Confidence 9999999987888889999999975 45555 899999999999888888888888999999999988765 22367
Q ss_pred hhHhcccceEEEeccc
Q 041519 286 RLSDRLDTFVGYFSTL 301 (521)
Q Consensus 286 ~L~~~L~~L~~~~~~~ 301 (521)
.+. +++.|++.....
T Consensus 275 ~~~-~l~~L~~s~n~~ 289 (394)
T COG4886 275 SLT-NLRELDLSGNSL 289 (394)
T ss_pred ccC-ccCEEeccCccc
Confidence 777 888887654433
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.8e-06 Score=92.75 Aligned_cols=89 Identities=28% Similarity=0.444 Sum_probs=64.9
Q ss_pred ccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEee
Q 041519 178 LSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLE 255 (521)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~ 255 (521)
++.|++++|.....+|..+ +.+++|+.|+|++|.+. .+|..++.+.+|++|++++|.....+| .++++.+|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6677777777555666664 77788888888888776 677777788888888888776455677 67788888888888
Q ss_pred CCcCc-ccCcccc
Q 041519 256 GTWIE-EVPEGME 267 (521)
Q Consensus 256 ~~~l~-~lp~~i~ 267 (521)
+|.+. .+|..++
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 87665 6666554
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=3e-06 Score=91.00 Aligned_cols=108 Identities=26% Similarity=0.388 Sum_probs=89.6
Q ss_pred ccEEEeecCCCC-CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccceeec
Q 041519 154 LERVSLMENDFE-EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 154 l~~L~l~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l 231 (521)
++.|++.++.+. .+|..+. .+++|+.|++++|.....+|..+ +.+++|++|+|++|.+. .+|..++++.+|++|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 678888998887 4565554 89999999999998556788775 99999999999999988 88999999999999999
Q ss_pred ccCCCCCccC-CccCC-CCCCEEEeeCC-cCcccC
Q 041519 232 RWCGILKRVP-SLAKL-LALQYLDLEGT-WIEEVP 263 (521)
Q Consensus 232 ~~~~~l~~lp-~~~~l-~~L~~L~l~~~-~l~~lp 263 (521)
++|.....+| .++.+ .++..+++.+| .+-..|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9998667889 77653 57788999988 343433
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.3e-07 Score=88.24 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=37.0
Q ss_pred CCCCccEEEcccCcCCCCCch-hHhhCCCCCcEEEccCCCCC---ccCccccCCcccceeecccCCCCCccC---CccCC
Q 041519 174 HCEILSTLLLQHNKYLQRIPE-CFFVHMHGLKVLNLCHTSIE---VLPNSVSDLTNLRSLLLRWCGILKRVP---SLAKL 246 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~lp---~~~~l 246 (521)
++++||...++++. +...+. +....+++++.|||+.|-+. .+-.-...|++|+.|+++.|. +...- .-..+
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhh
Confidence 34444444444443 333331 12244555555555554332 112222345555555555543 22211 12345
Q ss_pred CCCCEEEeeCCcCc
Q 041519 247 LALQYLDLEGTWIE 260 (521)
Q Consensus 247 ~~L~~L~l~~~~l~ 260 (521)
.+|+.|.+++|++.
T Consensus 197 ~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLS 210 (505)
T ss_pred hhhheEEeccCCCC
Confidence 56666666666554
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=3.6e-05 Score=76.42 Aligned_cols=63 Identities=24% Similarity=0.280 Sum_probs=45.5
Q ss_pred hCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCC-cCcccCcc
Q 041519 198 VHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGT-WIEEVPEG 265 (521)
Q Consensus 198 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~ 265 (521)
..+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+| .+ ..+|++|++++| .+..+|.+
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 446778888888888777772 22358888888888777777 44 357888888888 77777654
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=9.3e-06 Score=53.88 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=15.1
Q ss_pred CCcEEEccCCCCCccCccccCCcccceeecccC
Q 041519 202 GLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWC 234 (521)
Q Consensus 202 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 234 (521)
+|++|++++|.++.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344455555544444444444444555554444
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.91 E-value=1.1e-06 Score=85.03 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=63.7
Q ss_pred CccEEEeecCCCCCCC--CCcCCCCCCccEEEcccCcCCCCCc-hhHhhCCCCCcEEEccCCC-CCcc-Cc-cccCCccc
Q 041519 153 NLERVSLMENDFEEIP--SNMSPHCEILSTLLLQHNKYLQRIP-ECFFVHMHGLKVLNLCHTS-IEVL-PN-SVSDLTNL 226 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~--~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~-l~~l-p~-~i~~L~~L 226 (521)
.++.|++.++.-.... ..+...|++++.|.+.+|..+++.. .++-..+..|++|++..|. ++.. -+ -...+.+|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4566777665432111 1233478888888888887554432 2334578889999888853 4421 12 22367788
Q ss_pred ceeecccCCCCCccC---CccCCCCCCEEEeeCC
Q 041519 227 RSLLLRWCGILKRVP---SLAKLLALQYLDLEGT 257 (521)
Q Consensus 227 ~~L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~ 257 (521)
.||++++|+.+..-. -.....+++.+..+||
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 899998888666521 2344455666666666
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=4.7e-05 Score=75.63 Aligned_cols=110 Identities=29% Similarity=0.499 Sum_probs=67.6
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC-CCCccCccccCCcccceee
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT-SIEVLPNSVSDLTNLRSLL 230 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~ 230 (521)
.++++|+++++.+..+|. +. .+|++|.+.+|..+..+|..+ ..+|++|++++| .+..+|.+ |+.|+
T Consensus 52 ~~l~~L~Is~c~L~sLP~-LP---~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV-LP---NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcccCC-CC---CCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEE
Confidence 567888888888888872 22 468888888877677777654 357888888887 56677764 44444
Q ss_pred ccc--CCCCCccC-CccCC------------------CCCCEEEeeCCcCcccCccccCCCCCcccc
Q 041519 231 LRW--CGILKRVP-SLAKL------------------LALQYLDLEGTWIEEVPEGMEMLENLSHLS 276 (521)
Q Consensus 231 l~~--~~~l~~lp-~~~~l------------------~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 276 (521)
+.+ +..+..+| ++..| .+|++|++++|....+|.++. .+|++|.
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSIT 183 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEE
Confidence 443 22355666 44333 256677777764444444332 3444444
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=3.6e-06 Score=81.97 Aligned_cols=82 Identities=22% Similarity=0.214 Sum_probs=37.0
Q ss_pred CCccEEEeecCCCCCCCC-CcCCCCCCccEEEcccCcCCCCCc--hhHhhCCCCCcEEEccCCCCCccCccc--cCCccc
Q 041519 152 ENLERVSLMENDFEEIPS-NMSPHCEILSTLLLQHNKYLQRIP--ECFFVHMHGLKVLNLCHTSIEVLPNSV--SDLTNL 226 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~L~~~~l~~lp~~i--~~L~~L 226 (521)
+++|.+++.++.+...+. ...+.|++++.|+++.|- +..+- ..+...+++|+.|+++.|.+....++. ..+.+|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 445555555555444432 233345555555555543 22211 123345555555555555544322221 134455
Q ss_pred ceeecccC
Q 041519 227 RSLLLRWC 234 (521)
Q Consensus 227 ~~L~l~~~ 234 (521)
+.|.++.|
T Consensus 200 K~L~l~~C 207 (505)
T KOG3207|consen 200 KQLVLNSC 207 (505)
T ss_pred heEEeccC
Confidence 55555554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=2.2e-06 Score=79.50 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCcEEEccCCCCC--ccCccccCCcccceeecccCCCCCc-cC-CccCCCCCCEEEeeCC-cCc
Q 041519 202 GLKVLNLCHTSIE--VLPNSVSDLTNLRSLLLRWCGILKR-VP-SLAKLLALQYLDLEGT-WIE 260 (521)
Q Consensus 202 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~-lp-~~~~l~~L~~L~l~~~-~l~ 260 (521)
.|++|||++..++ .+..-+..+.+|+.|.+.|+. +.+ +- .+.+-.+|+.|+++.| +++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccc
Confidence 3566666665544 333444455556666665543 222 22 4555566666666666 444
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=2e-05 Score=84.70 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=74.7
Q ss_pred CCccEEEeecCCC--CCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCccccee
Q 041519 152 ENLERVSLMENDF--EEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSL 229 (521)
Q Consensus 152 ~~l~~L~l~~~~~--~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 229 (521)
.++++|++.+... ..+|...+..+|.|++|.+.+-.....--...+.++++|+.||+++++++.+ .+++.|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 3678888877442 2344445567889999988875422222223457889999999999988877 568899999999
Q ss_pred ecccCCCCCccC---CccCCCCCCEEEeeCCcC
Q 041519 230 LLRWCGILKRVP---SLAKLLALQYLDLEGTWI 259 (521)
Q Consensus 230 ~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l 259 (521)
.+++-. +..-. .+.+|++|++||++....
T Consensus 201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hccCCC-CCchhhHHHHhcccCCCeeecccccc
Confidence 888743 44333 578899999999988743
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=7.9e-05 Score=49.39 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=29.4
Q ss_pred CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC
Q 041519 176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP 217 (521)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp 217 (521)
++|++|++++|+ +..+|+.+ +++++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l-~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPEL-SNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence 467888888887 77787764 78888888888888877654
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=8.3e-06 Score=67.12 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=75.9
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR 232 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 232 (521)
.+...++++|.+..+|+.+..+++.+++|++.+|. +..+|..+ ..++.||.|+++.|.+...|.-|..|++|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 56778899999999999888888899999999998 99999984 89999999999999999999988899999999988
Q ss_pred cCCCCCccC
Q 041519 233 WCGILKRVP 241 (521)
Q Consensus 233 ~~~~l~~lp 241 (521)
++. ...+|
T Consensus 132 ~na-~~eid 139 (177)
T KOG4579|consen 132 ENA-RAEID 139 (177)
T ss_pred CCc-cccCc
Confidence 865 66666
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=5.7e-06 Score=85.41 Aligned_cols=117 Identities=27% Similarity=0.313 Sum_probs=84.9
Q ss_pred CccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEe
Q 041519 177 ILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDL 254 (521)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l 254 (521)
.|.+.++++|. +..+..+. .-+++|+.|+|++|+++..- .+..+.+|++|||++|. +..+| +...+ +|+.|.+
T Consensus 165 ~L~~a~fsyN~-L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeee
Confidence 45555556655 44444443 67888999999999988665 57889999999999975 88888 33333 3999999
Q ss_pred eCCcCcccCccccCCCCCcccccccc-------hHHHHhhHhcccceEEEecc
Q 041519 255 EGTWIEEVPEGMEMLENLSHLSLFMA-------AEEAARLSDRLDTFVGYFST 300 (521)
Q Consensus 255 ~~~~l~~lp~~i~~l~~L~~L~~~~~-------~~~i~~L~~~L~~L~~~~~~ 300 (521)
++|.++.+ .++.+|++|++|++.+. ...+..|. .|+.|.+-.+.
T Consensus 240 rnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNP 290 (1096)
T ss_pred cccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCc
Confidence 99988877 46889999999998754 23355666 67777654443
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.49 E-value=2.6e-05 Score=79.91 Aligned_cols=121 Identities=28% Similarity=0.360 Sum_probs=70.5
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR 232 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 232 (521)
.+..+.+..|.+..+-..+. .+++|+.|++.+|. +..+...+ ..+.+|++|++++|.|+.+.. +..+..|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~-~~~~l~~l~l~~n~-i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLS-KLKSLEALDLYDNK-IEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhhhhcccc-cccceeeeeccccc-hhhcccch-hhhhcchheeccccccccccc-hhhccchhhheec
Confidence 33444445555444222222 55666777776666 55555432 566777777777777666554 5566667777777
Q ss_pred cCCCCCccCCccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccc
Q 041519 233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLF 278 (521)
Q Consensus 233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~ 278 (521)
+|. +..++.+..+.+|+.+++++|.+..++.. ...+.++..+.+.
T Consensus 149 ~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 149 GNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred cCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 764 66666666667777777777766655442 3445555555444
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=4e-05 Score=78.55 Aligned_cols=109 Identities=28% Similarity=0.381 Sum_probs=91.6
Q ss_pred ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccc
Q 041519 148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLR 227 (521)
Q Consensus 148 ~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 227 (521)
...++++..+++..|.+..+...+ ..+.+|++|++++|. ++.+.. +..+..|+.|++.+|.+..+.. +..+..|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcccch-hhhhcchheeccccc-cccccc--hhhccchhhheeccCcchhccC-Cccchhhh
Confidence 445678999999999999887643 378999999999998 888776 5788889999999999987765 56699999
Q ss_pred eeecccCCCCCccCC--ccCCCCCCEEEeeCCcCccc
Q 041519 228 SLLLRWCGILKRVPS--LAKLLALQYLDLEGTWIEEV 262 (521)
Q Consensus 228 ~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~l~~l 262 (521)
.+++++|. +..++. ...+.+++.+++.++.+..+
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc
Confidence 99999976 888875 58999999999999977654
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.26 E-value=0.00044 Score=61.00 Aligned_cols=102 Identities=24% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcccc-CCcccceeecccCCCCCccC---CccCCCCCC
Q 041519 175 CEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVS-DLTNLRSLLLRWCGILKRVP---SLAKLLALQ 250 (521)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~~l~~lp---~~~~l~~L~ 250 (521)
......+++++|. +..++. |..++.|..|.+.+|.|+.+-+.+. .+++|..|.+.+|. +.++. .+..+++|+
T Consensus 41 ~d~~d~iDLtdNd-l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccceecccccc-hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccc
Confidence 4466677777776 666655 5677788888888888776655555 45568888888765 66554 356677888
Q ss_pred EEEeeCCcCcccCc----cccCCCCCcccccccc
Q 041519 251 YLDLEGTWIEEVPE----GMEMLENLSHLSLFMA 280 (521)
Q Consensus 251 ~L~l~~~~l~~lp~----~i~~l~~L~~L~~~~~ 280 (521)
+|.+-+|.+...+. -+.++++|+.|+...+
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 88887776554332 2455666666665544
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=1.4e-05 Score=74.23 Aligned_cols=85 Identities=20% Similarity=0.187 Sum_probs=66.5
Q ss_pred CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccceeecccCCCCCccC---CccCCCCCCE
Q 041519 176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLLRWCGILKRVP---SLAKLLALQY 251 (521)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp---~~~~l~~L~~ 251 (521)
+.|+.|+++.......-...+++.+..|+.|.+.++.+. .+-..|.+=.+|+.|+++.|.++.... -+.++..|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 458888888766322333456788999999999999887 455667788899999999999888775 3788999999
Q ss_pred EEeeCCcCc
Q 041519 252 LDLEGTWIE 260 (521)
Q Consensus 252 L~l~~~~l~ 260 (521)
|++++|.+.
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 999999543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=0.00015 Score=78.10 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=38.1
Q ss_pred CCccEEEcccCcCC-CCCchhHhhCCCCCcEEEccCCCCC--ccCccccCCcccceeecccCCCCCccCCccCCCCCCEE
Q 041519 176 EILSTLLLQHNKYL-QRIPECFFVHMHGLKVLNLCHTSIE--VLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYL 252 (521)
Q Consensus 176 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L 252 (521)
.+|+.|+++|...+ ...|..+...+|.|+.|.+++-.+. .+-.-..++++|..||++++ ++..+..+++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHH
Confidence 35566666554332 2333344344556666655554332 22222334555555555552 34444445555555555
Q ss_pred EeeC
Q 041519 253 DLEG 256 (521)
Q Consensus 253 ~l~~ 256 (521)
.+.+
T Consensus 201 ~mrn 204 (699)
T KOG3665|consen 201 SMRN 204 (699)
T ss_pred hccC
Confidence 4444
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.17 E-value=5.2e-05 Score=62.50 Aligned_cols=87 Identities=28% Similarity=0.418 Sum_probs=53.6
Q ss_pred CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEEEe
Q 041519 176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDL 254 (521)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l 254 (521)
..|...++++|. +..+|..+-..++.+..|++++|.++.+|.++..++.|+.|+++.|+ +...| -+..|.+|-.|+.
T Consensus 53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 455556666666 66666665455556666666666666666666666666666666655 55555 4555666666666
Q ss_pred eCCcCcccCc
Q 041519 255 EGTWIEEVPE 264 (521)
Q Consensus 255 ~~~~l~~lp~ 264 (521)
.++.+.++|-
T Consensus 131 ~~na~~eid~ 140 (177)
T KOG4579|consen 131 PENARAEIDV 140 (177)
T ss_pred CCCccccCcH
Confidence 6665555544
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.05 E-value=1.2e-05 Score=83.08 Aligned_cols=123 Identities=24% Similarity=0.227 Sum_probs=84.8
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR 232 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 232 (521)
.+...++++|.+..+...+- -++.++.|++++|+ +.... .+..+++|+.|||++|.+..+|.--..=.+|+.|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk-~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQ-LLPALESLNLSHNK-FTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhh-hhhhH--HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 56667777777776655543 56788888888888 55554 3578888888888888888777521122248888888
Q ss_pred cCCCCCccCCccCCCCCCEEEeeCCcCcccCc--cccCCCCCcccccccc
Q 041519 233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPE--GMEMLENLSHLSLFMA 280 (521)
Q Consensus 233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~ 280 (521)
+|. ++.+-.+.+|.+|+.||++.|-+....+ -++.|..|+.|.+.+.
T Consensus 241 nN~-l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 241 NNA-LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ccH-HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 875 7777788888888888888885543211 1445666666666544
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.94 E-value=0.0026 Score=56.30 Aligned_cols=103 Identities=28% Similarity=0.389 Sum_probs=80.0
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC--ccccCCcccce
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP--NSVSDLTNLRS 228 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp--~~i~~L~~L~~ 228 (521)
..+...+++..|.+..++. ++.++.|.+|.+.+|. +..+.+.+-..+++|..|.|.+|++..+- .-+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3466778888888776643 3588999999999998 88888877667788999999999877442 22567789999
Q ss_pred eecccCCCCCccC-----CccCCCCCCEEEeeCC
Q 041519 229 LLLRWCGILKRVP-----SLAKLLALQYLDLEGT 257 (521)
Q Consensus 229 L~l~~~~~l~~lp-----~~~~l~~L~~L~l~~~ 257 (521)
|.+-+|. +..-. -+.++++|++||..+-
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 9999876 55554 2788999999998764
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.77 E-value=0.00012 Score=69.65 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCCCccEEEcccCcCCCC----CchhHhhCCCCCcEEEccCCC---CC-ccCcc-------ccCCcccceeecccCCCCC
Q 041519 174 HCEILSTLLLQHNKYLQR----IPECFFVHMHGLKVLNLCHTS---IE-VLPNS-------VSDLTNLRSLLLRWCGILK 238 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~---l~-~lp~~-------i~~L~~L~~L~l~~~~~l~ 238 (521)
.+..+..+++++|. ++. .-...+.+.+.||..++++-- .. ++|.. +-..++|++|+||+|-.-.
T Consensus 28 ~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 45678888888886 332 112234667788888877531 21 44443 2234477777777765322
Q ss_pred ccC-C----ccCCCCCCEEEeeCCcCc
Q 041519 239 RVP-S----LAKLLALQYLDLEGTWIE 260 (521)
Q Consensus 239 ~lp-~----~~~l~~L~~L~l~~~~l~ 260 (521)
.-+ . +.+...|++|.+.+|++.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 221 1 455667777777777554
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00087 Score=62.64 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=18.5
Q ss_pred CCCCccEEEcccCcCCCCCch--hHhhCCCCCcEEEccCCCC
Q 041519 174 HCEILSTLLLQHNKYLQRIPE--CFFVHMHGLKVLNLCHTSI 213 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l 213 (521)
.++.++.+++.+|. +....+ .+..++++|++|+++.|++
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcC
Confidence 34455555555554 333322 2334555555555555543
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.36 E-value=0.00023 Score=69.33 Aligned_cols=293 Identities=21% Similarity=0.160 Sum_probs=145.1
Q ss_pred CCccEEEcccCcCCCCCch-hHhhCCCCCcEEEccCCC-CC-ccCcccc-CCcccceeecccCCCCCccC-C--ccCCCC
Q 041519 176 EILSTLLLQHNKYLQRIPE-CFFVHMHGLKVLNLCHTS-IE-VLPNSVS-DLTNLRSLLLRWCGILKRVP-S--LAKLLA 248 (521)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~-l~-~lp~~i~-~L~~L~~L~l~~~~~l~~lp-~--~~~l~~ 248 (521)
..|+.|.+.|+.....-+- .+-.+++++..|++.++. ++ ..-.+++ ...+|++|++..|..++... . ...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4678888888775444332 234678888888888875 44 1122233 67789999999988777665 2 456789
Q ss_pred CCEEEeeCC-cCcc--cCccccCCCCCcccccccc-hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCc--ceee
Q 041519 249 LQYLDLEGT-WIEE--VPEGMEMLENLSHLSLFMA-AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKN--YCLL 322 (521)
Q Consensus 249 L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~~~~~-~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~--~l~~ 322 (521)
|+++++++| .++. +-.-....+++..+...++ ..+...+. ........+..+. ....
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~-----------------~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL-----------------KAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH-----------------HHhccChHhhccchhhhcc
Confidence 999999998 5554 1111122222333322211 00000000 0000000000000 0000
Q ss_pred eecCCCCCCccccceeeeeeeeeecCccc--------ccCccccceEEEecccCcccccccccCCCcccccccchhhccC
Q 041519 323 LSASGKRGFLEVDKSVRLFACKICETEET--------IVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQ 394 (521)
Q Consensus 323 ~~~~~~~~~~~~~~~~~L~~L~i~~~~~~--------~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~ 394 (521)
..+...+ ........|+.+..++.... ..--.+|+.|.+.+|..+.+.. ++.+ ..+.+
T Consensus 281 -lTD~~~~-~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------ft~l----~rn~~ 346 (483)
T KOG4341|consen 281 -LTDEDLW-LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------FTML----GRNCP 346 (483)
T ss_pred -ccchHHH-HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--------hhhh----hcCCh
Confidence 0000000 00000112222222221000 0112456666666665533321 1100 13455
Q ss_pred CCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccccccc---CCCcccCCCccEEEEecCC
Q 041519 395 NLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICS---DNGVLVCNSLQEIEVYNCP 471 (521)
Q Consensus 395 ~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~---~~~~~~~p~L~~L~i~~C~ 471 (521)
.|+.+++.+|..+..-. ........|.|++|.+++|.....-.. ..+......|+.+++.+||
T Consensus 347 ~Le~l~~e~~~~~~d~t--------------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGT--------------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhhhhcccccceehhhh--------------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 66666666664433220 001124689999999999887665411 1234456789999999999
Q ss_pred CcccccCcCcccCCCCCCCCCCceEEEee------hhhccccccCCcchh--hhcCC
Q 041519 472 KLKRLSLSLPLLDNGQPSPPPALEVIEIK------KELWESLEWDQPNAK--DVLNP 520 (521)
Q Consensus 472 ~L~~lP~~~~~l~~~~~~~~~~L~~l~~~------~~~~~~l~~~~~~~~--~~~~p 520 (521)
..++- .+.++++ +++|+.+++. ++-.+++.-.=|++| ++|.|
T Consensus 413 ~i~d~--~Le~l~~-----c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 413 LITDA--TLEHLSI-----CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred CchHH--HHHHHhh-----CcccceeeeechhhhhhhhhHHHHhhCccceehhhccC
Confidence 76543 4566666 7789998876 444555444444444 56655
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.0026 Score=58.60 Aligned_cols=76 Identities=26% Similarity=0.287 Sum_probs=35.4
Q ss_pred CCcccceeecccC--CCCCccC-CccCCCCCCEEEeeCCcCcccC--ccccCCCCCcccccccc---------hHHHHhh
Q 041519 222 DLTNLRSLLLRWC--GILKRVP-SLAKLLALQYLDLEGTWIEEVP--EGMEMLENLSHLSLFMA---------AEEAARL 287 (521)
Q Consensus 222 ~L~~L~~L~l~~~--~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~---------~~~i~~L 287 (521)
.|++|++|.++.| .....++ ...++++|++|++++|+++.+- ....++.+|..|+++.+ -..+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 3445555555555 2223333 3334455555555555443210 11334444445544444 2234455
Q ss_pred HhcccceEEEe
Q 041519 288 SDRLDTFVGYF 298 (521)
Q Consensus 288 ~~~L~~L~~~~ 298 (521)
+ +|..|+...
T Consensus 143 ~-~L~~LD~~d 152 (260)
T KOG2739|consen 143 P-SLKYLDGCD 152 (260)
T ss_pred h-hhccccccc
Confidence 6 777776543
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.89 E-value=0.004 Score=57.37 Aligned_cols=59 Identities=25% Similarity=0.298 Sum_probs=25.7
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccC--cCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHN--KYLQRIPECFFVHMHGLKVLNLCHTSIE 214 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 214 (521)
.+..+++.+..++.+.. ++.+++|+.|.++.| +....++.-. ..+++|++|++++|.++
T Consensus 44 ~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIK 104 (260)
T ss_pred chhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccc
Confidence 44444444444433322 124555555555555 2222222222 33455555555555443
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.00048 Score=63.72 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=46.0
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc--cccCCcccceee
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN--SVSDLTNLRSLL 230 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~ 230 (521)
+++.|..+++.++.+. +..+|+.|++|.|+-|+ ++.+.+ +..++.|+.|.|+.|.|..+-. -+.++++|++|.
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4555666666666552 33456666666666666 555554 4566666666666666554332 234556666666
Q ss_pred cccCCCCC
Q 041519 231 LRWCGILK 238 (521)
Q Consensus 231 l~~~~~l~ 238 (521)
|..|....
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 65554333
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.003 Score=55.91 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=37.3
Q ss_pred hccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecC
Q 041519 391 PALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNC 470 (521)
Q Consensus 391 ~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C 470 (521)
..++.++.|.+.+|..+.+..-.. .++.+|+|+.|+|++|+++++-... ....|++|+.|.+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~--------------l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLER--------------LGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDL 186 (221)
T ss_pred hccchhhhheeccccchhhHHHHH--------------hcccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCc
Confidence 456666666666666655442111 1235666667776666666553221 2234566666666665
Q ss_pred CCcc
Q 041519 471 PKLK 474 (521)
Q Consensus 471 ~~L~ 474 (521)
|...
T Consensus 187 ~~v~ 190 (221)
T KOG3864|consen 187 PYVA 190 (221)
T ss_pred hhhh
Confidence 5433
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0062 Score=33.55 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=7.6
Q ss_pred CcEEEccCCCCCccCcc
Q 041519 203 LKVLNLCHTSIEVLPNS 219 (521)
Q Consensus 203 L~~L~L~~~~l~~lp~~ 219 (521)
|++|++++|.++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0084 Score=33.01 Aligned_cols=20 Identities=35% Similarity=0.760 Sum_probs=10.9
Q ss_pred CCCEEEeeCCcCcccCcccc
Q 041519 248 ALQYLDLEGTWIEEVPEGME 267 (521)
Q Consensus 248 ~L~~L~l~~~~l~~lp~~i~ 267 (521)
+|++|++++|.++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35555555555555555543
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.18 E-value=0.073 Score=44.42 Aligned_cols=107 Identities=19% Similarity=0.333 Sum_probs=55.8
Q ss_pred ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCcccce
Q 041519 150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRS 228 (521)
Q Consensus 150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~ 228 (521)
..++++.+.+.. .+..++...|..+++|+.+.+..+ +..++...|..++.++.+.+.. .+..++. .+....+|+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 344677777663 567777777777778888887663 6777777777777788888865 4544443 3445778888
Q ss_pred eecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCc
Q 041519 229 LLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPE 264 (521)
Q Consensus 229 L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~ 264 (521)
+.+.. .+..++ .+.+. +|+.+.+.. .+..++.
T Consensus 86 i~~~~--~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~ 119 (129)
T PF13306_consen 86 IDIPS--NITEIGSSSFSNC-NLKEINIPS-NITKIEE 119 (129)
T ss_dssp EEETT--T-BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred cccCc--cccEEchhhhcCC-CceEEEECC-CccEECC
Confidence 88765 266666 46665 777777654 3444433
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.0025 Score=59.12 Aligned_cols=102 Identities=25% Similarity=0.255 Sum_probs=71.9
Q ss_pred CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccCC---ccCCCCCC
Q 041519 174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPS---LAKLLALQ 250 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~---~~~l~~L~ 250 (521)
++.+.+.|++.||. +.++. +..+|+.|.+|.|+-|+|+.+-. +..+++|+.|.|+.|. +..+-. +.++++|+
T Consensus 17 dl~~vkKLNcwg~~-L~DIs--ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG-LDDIS--ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCC-ccHHH--HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 45677888888887 66654 46799999999999999987755 7888999999999875 766652 66788888
Q ss_pred EEEeeCC-cCcccCcc-----ccCCCCCcccccccc
Q 041519 251 YLDLEGT-WIEEVPEG-----MEMLENLSHLSLFMA 280 (521)
Q Consensus 251 ~L~l~~~-~l~~lp~~-----i~~l~~L~~L~~~~~ 280 (521)
.|.+..| ....-+.. +.-|.+|+.|+-..+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 8888877 33332221 334455555544433
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.014 Score=54.79 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=61.4
Q ss_pred cEEEcccCcCCCCCch--hHhhCCCCCcEEEccCCCCC---ccCccccCCcccceeecccCCCCCccCCc-cCCCCCCEE
Q 041519 179 STLLLQHNKYLQRIPE--CFFVHMHGLKVLNLCHTSIE---VLPNSVSDLTNLRSLLLRWCGILKRVPSL-AKLLALQYL 252 (521)
Q Consensus 179 ~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-~~l~~L~~L 252 (521)
+.|.+.++. +....+ .+-...++++.+||.+|.++ ++-.-+.++++|++|+++.|.--..+-+. ..+.+|++|
T Consensus 48 ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 48 ELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhheecCCC-CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 345555554 443332 23346778899999999876 33333458889999999887532222222 355788888
Q ss_pred EeeCCcC--cccCccccCCCCCccccccc
Q 041519 253 DLEGTWI--EEVPEGMEMLENLSHLSLFM 279 (521)
Q Consensus 253 ~l~~~~l--~~lp~~i~~l~~L~~L~~~~ 279 (521)
-+.|+.+ +..-..+..+..++.|++..
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 8888843 34444555666666665543
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.0064 Score=53.91 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=44.9
Q ss_pred ccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 431 VTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 431 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
..+++++.|.+.+|..+..|+.+.-...+|+|+.|+|++||+.++- ++..|.. +++|+.+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~--GL~~L~~-----lknLr~L~l~ 184 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG--GLACLLK-----LKNLRRLHLY 184 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh--HHHHHHH-----hhhhHHHHhc
Confidence 4578888999999999888887644446789999999999987764 3333333 4446666655
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.17 E-value=0.035 Score=53.39 Aligned_cols=107 Identities=22% Similarity=0.226 Sum_probs=70.7
Q ss_pred CCccEEEeecCCCCCCCCC----cCCCCCCccEEEcccCcCCCC----CchhHhhCCCCCcEEEccCCCCC-----ccCc
Q 041519 152 ENLERVSLMENDFEEIPSN----MSPHCEILSTLLLQHNKYLQR----IPECFFVHMHGLKVLNLCHTSIE-----VLPN 218 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~----~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~-----~lp~ 218 (521)
+++|.+..+.|++..-+.. .+...+.|+.+.+..|. +.. +-..-|..+++|++|||+.|.++ .+-.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 5788888888887755433 23455788888888776 321 11122478888999999888765 3445
Q ss_pred cccCCcccceeecccCCCCCccC--C-----ccCCCCCCEEEeeCCcCc
Q 041519 219 SVSDLTNLRSLLLRWCGILKRVP--S-----LAKLLALQYLDLEGTWIE 260 (521)
Q Consensus 219 ~i~~L~~L~~L~l~~~~~l~~lp--~-----~~~l~~L~~L~l~~~~l~ 260 (521)
.+..+++|+.|++++|- ++.-- . -...++|++|.+.+|.++
T Consensus 236 aL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred Hhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 56677788888888875 43211 1 123677888888887555
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.69 E-value=0.044 Score=27.97 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=10.0
Q ss_pred CCccEEEEecCCCccccc
Q 041519 460 NSLQEIEVYNCPKLKRLS 477 (521)
Q Consensus 460 p~L~~L~i~~C~~L~~lP 477 (521)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467888888887 77776
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.18 E-value=0.18 Score=41.93 Aligned_cols=93 Identities=20% Similarity=0.350 Sum_probs=58.0
Q ss_pred CCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCcccceeecccCCCCCccC--Cc
Q 041519 167 IPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SL 243 (521)
Q Consensus 167 l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~ 243 (521)
++...|..+++|+.+.+.. . +..++...|..+.+|+.+.+.++ +..++. .+....+|+.+.+.. .+..++ .+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence 4566677888999999874 3 77888888899999999999875 776654 456777899999965 467776 47
Q ss_pred cCCCCCCEEEeeCCcCcccCcc
Q 041519 244 AKLLALQYLDLEGTWIEEVPEG 265 (521)
Q Consensus 244 ~~l~~L~~L~l~~~~l~~lp~~ 265 (521)
..+.+|+.+++..+ +..++..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~ 98 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSS 98 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTT
T ss_pred cccccccccccCcc-ccEEchh
Confidence 77999999998664 5555443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.07 E-value=0.067 Score=27.28 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=5.2
Q ss_pred CCcEEEccCCCCCcc
Q 041519 202 GLKVLNLCHTSIEVL 216 (521)
Q Consensus 202 ~L~~L~L~~~~l~~l 216 (521)
+|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.64 E-value=0.46 Score=27.07 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=9.5
Q ss_pred CCCcEEEccCCCCCccCc
Q 041519 201 HGLKVLNLCHTSIEVLPN 218 (521)
Q Consensus 201 ~~L~~L~L~~~~l~~lp~ 218 (521)
++|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555554
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.64 E-value=0.46 Score=27.07 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=9.5
Q ss_pred CCCcEEEccCCCCCccCc
Q 041519 201 HGLKVLNLCHTSIEVLPN 218 (521)
Q Consensus 201 ~~L~~L~L~~~~l~~lp~ 218 (521)
++|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555554
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.53 E-value=0.15 Score=47.51 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCCccEEEcccCcCCCCCc-h---hHhhCCCCCcEEEccCCC---CC-ccC-------ccccCCcccceeecccCCCCCc
Q 041519 175 CEILSTLLLQHNKYLQRIP-E---CFFVHMHGLKVLNLCHTS---IE-VLP-------NSVSDLTNLRSLLLRWCGILKR 239 (521)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~-~---~~~~~l~~L~~L~L~~~~---l~-~lp-------~~i~~L~~L~~L~l~~~~~l~~ 239 (521)
+..+..+++++|. ++.-. . ..+.+-++|++.+++.-. .. ++| +.+-++++|+..+++.|..-..
T Consensus 29 ~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 5678888999987 43311 1 123566788888887632 11 333 3455678888888888765444
Q ss_pred cC-C----ccCCCCCCEEEeeCCcCccc
Q 041519 240 VP-S----LAKLLALQYLDLEGTWIEEV 262 (521)
Q Consensus 240 lp-~----~~~l~~L~~L~l~~~~l~~l 262 (521)
.| . +.+-..|.+|.+++|++..+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 44 2 56777888888888876644
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.83 E-value=0.48 Score=27.02 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=16.3
Q ss_pred CCCCCEEEeeCCcCcccCccc
Q 041519 246 LLALQYLDLEGTWIEEVPEGM 266 (521)
Q Consensus 246 l~~L~~L~l~~~~l~~lp~~i 266 (521)
|.+|++|++++|.++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.83 E-value=0.48 Score=27.02 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=16.3
Q ss_pred CCCCCEEEeeCCcCcccCccc
Q 041519 246 LLALQYLDLEGTWIEEVPEGM 266 (521)
Q Consensus 246 l~~L~~L~l~~~~l~~lp~~i 266 (521)
|.+|++|++++|.++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
No 79
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.66 E-value=3.8 Score=46.71 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCCCchhhHHHHHHH-HhHhcCCchhHHHHHHHHHH
Q 041519 12 EIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLE-FSYHRLKDEKLQQCFLYCAL 90 (521)
Q Consensus 12 ~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~-lSY~~L~~~~lk~cfl~~s~ 90 (521)
+...+|.+.|+|.|+++..++..+....... ......+... ....+...+. -.++.|| .+.++.++..|+
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~-~~~~~~l~~~a~ 276 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGI------NASHLSDYLVEEVLDNVD-LETRHFLLRCSV 276 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCC------CchhHHHHHHHHHHhcCC-HHHHHHHHHhcc
Confidence 3457899999999999999888776532100 1111111100 0123444332 2378999 899999999998
Q ss_pred -----------------HhHHHHHHHHcccccc-ccC-CCccccchHHHHHHHHHh
Q 041519 91 -----------------GHTILNRLVNCCLLES-AKD-GSCVKMHDLIRDMALRIT 127 (521)
Q Consensus 91 -----------------g~~~~~~L~~~~l~~~-~~~-~~~~~mhdli~dl~~~i~ 127 (521)
+...+++|.++++|.. .+. +..|+.|++++++.....
T Consensus 277 ~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 277 LRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 5678999999998653 332 247889999999988664
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.68 E-value=0.027 Score=51.13 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCCEE
Q 041519 174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYL 252 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L 252 (521)
.+....+|+++.|. ...+...+ ..++.|.-|+++.|.+..+|..++.+..++.+++..|. ....| +.+++++++++
T Consensus 40 ~~kr~tvld~~s~r-~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR-LVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhH-HHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence 44566666666665 44444433 55556666667766666777766776667776666643 66667 67777777777
Q ss_pred EeeCCc
Q 041519 253 DLEGTW 258 (521)
Q Consensus 253 ~l~~~~ 258 (521)
+..++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 766663
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.50 E-value=0.021 Score=51.76 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=72.5
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL 230 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 230 (521)
.+..+.|+++.|....+...+. .+..+..|+++.|. +..+|.++ +....++.+++..|..+..|.+.+.++++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s-~~t~~~rl~~sknq-~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFS-ILTRLVRLDLSKNQ-IKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHhhccchH-HHHHHHHHhccHhh-HhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 3567888888888877776654 67788899999888 88899886 889999999999999999999999999999999
Q ss_pred cccCCCCCcc
Q 041519 231 LRWCGILKRV 240 (521)
Q Consensus 231 l~~~~~l~~l 240 (521)
+.++.....+
T Consensus 118 ~k~~~~~~~~ 127 (326)
T KOG0473|consen 118 QKKTEFFRKL 127 (326)
T ss_pred hccCcchHHH
Confidence 9987643333
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.02 E-value=0.74 Score=26.29 Aligned_cols=17 Identities=24% Similarity=0.811 Sum_probs=12.8
Q ss_pred CCCccEEEEecCCCccc
Q 041519 459 CNSLQEIEVYNCPKLKR 475 (521)
Q Consensus 459 ~p~L~~L~i~~C~~L~~ 475 (521)
+|+|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47788888888887654
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=77.87 E-value=4.4 Score=38.13 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=9.8
Q ss_pred chHHHHHHHHHhccCCc
Q 041519 116 HDLIRDMALRITSKSPL 132 (521)
Q Consensus 116 hdli~dl~~~i~~~~~~ 132 (521)
-..++.++.-++..+..
T Consensus 44 tEA~e~l~~~ia~~~~L 60 (388)
T COG5238 44 TEAMEELCNVIANVRNL 60 (388)
T ss_pred HHHHHHHHHHHhhhcce
Confidence 35566666666654443
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=76.92 E-value=0.53 Score=49.05 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=39.4
Q ss_pred hccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecC
Q 041519 391 PALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNC 470 (521)
Q Consensus 391 ~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C 470 (521)
..+++|+.|++.+|..+.+..-.. .....++|+.|.+.+|+.+..-........+|+|++|+++.|
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~--------------l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSA--------------LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHH--------------HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 456777777777765433221100 112367777777777776543322223445677777777777
Q ss_pred CCc
Q 041519 471 PKL 473 (521)
Q Consensus 471 ~~L 473 (521)
..+
T Consensus 306 ~~~ 308 (482)
T KOG1947|consen 306 HGL 308 (482)
T ss_pred ccc
Confidence 765
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=69.79 E-value=1.2 Score=46.39 Aligned_cols=115 Identities=21% Similarity=0.268 Sum_probs=70.8
Q ss_pred cccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEecc-cchhhhhccCcchhhhhhhcccccccccCC
Q 041519 356 EDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYC-FLIEEIVAVEDEETEKELATNTIINTVTLP 434 (521)
Q Consensus 356 ~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c-~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~ 434 (521)
++|+.|.+.+|..+.... . .......++|+.|++.+| ......+... .......+
T Consensus 188 ~~L~~l~l~~~~~~~~~~----------~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~~~ 243 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDS----------L--DALALKCPNLEELDLSGCCLLITLSPLLL------------LLLLSICR 243 (482)
T ss_pred chhhHhhhcccccCChhh----------H--HHHHhhCchhheecccCcccccccchhHh------------hhhhhhcC
Confidence 567788777776543210 0 112367889999999874 2222211110 01224569
Q ss_pred ccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 435 RLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 435 ~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
+|+.|++..|..+.......-...+|+|+.|.+.+|+.++.- ++..+.. .+|+|++|++.
T Consensus 244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~--gl~~i~~----~~~~L~~L~l~ 303 (482)
T KOG1947|consen 244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE--GLVSIAE----RCPSLRELDLS 303 (482)
T ss_pred CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh--HHHHHHH----hcCcccEEeee
Confidence 999999999887665544222334899999999999985432 3333322 46779999998
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.88 E-value=3.9 Score=23.44 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=11.2
Q ss_pred CCcEEEccCCCCCccCc
Q 041519 202 GLKVLNLCHTSIEVLPN 218 (521)
Q Consensus 202 ~L~~L~L~~~~l~~lp~ 218 (521)
+|++|++++|.++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666777776666665
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.17 E-value=12 Score=21.46 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=7.8
Q ss_pred CCCcEEEccCCCCC
Q 041519 201 HGLKVLNLCHTSIE 214 (521)
Q Consensus 201 ~~L~~L~L~~~~l~ 214 (521)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45556666665554
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=48.69 E-value=7.8 Score=21.36 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=5.3
Q ss_pred CCCcEEEccCCCC
Q 041519 201 HGLKVLNLCHTSI 213 (521)
Q Consensus 201 ~~L~~L~L~~~~l 213 (521)
++|+.|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555543
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.98 E-value=19 Score=20.83 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=8.8
Q ss_pred CCCcEEEccCCCCC
Q 041519 201 HGLKVLNLCHTSIE 214 (521)
Q Consensus 201 ~~L~~L~L~~~~l~ 214 (521)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666777766654
No 90
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=30.54 E-value=45 Score=21.67 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=17.9
Q ss_pred cCCChhHHHHHHHHHHHcCCc
Q 041519 4 LQVPALNKEIINEVVEECGCL 24 (521)
Q Consensus 4 ~~~p~~l~~i~~~i~~kc~Gl 24 (521)
.+-|++|++|-+++-+|.+|+
T Consensus 17 ~~gPPDLdel~r~l~~kl~~~ 37 (42)
T PF12221_consen 17 NQGPPDLDELFRKLQDKLGGL 37 (42)
T ss_pred CCCCCCHHHHHHHHHHHHhcc
Confidence 356999999999999998775
No 91
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=30.16 E-value=2.1e+02 Score=22.94 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=34.5
Q ss_pred HHHHHHcCCchhHHHHHHHhcC-CC-CChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhHHHHHHH
Q 041519 15 NEVVEECGCLPLAIVTVAASMS-GE-EEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLY 87 (521)
Q Consensus 15 ~~i~~kc~GlPLAi~~lg~~L~-~k-~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cfl~ 87 (521)
+.||+|..+.+++.-+=-+..+ +. .++-+...+++-+ .+... -||.|| .++|.||--
T Consensus 2 ~~Ivkk~n~t~v~~hl~~r~~~Ygd~s~~~DyqeAln~V-----------~e~~e----aFd~LP-a~iRe~F~N 60 (114)
T PF09675_consen 2 NKIVKKFNKTGVIAHLEQRQPEYGDCSSPFDYQEALNMV-----------AEANE----AFDELP-AHIRERFNN 60 (114)
T ss_pred hHHHHHHccchHHHHHHhcCCcccccCCHHhHHHHHHHH-----------HHHHH----HHHHch-HHHHHHhCC
Confidence 4688999998877655333222 11 2344555555533 12222 389999 999999954
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=25.22 E-value=5e+02 Score=24.91 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=14.1
Q ss_pred HhHHHH-HHHHccccccccC
Q 041519 91 GHTILN-RLVNCCLLESAKD 109 (521)
Q Consensus 91 g~~~~~-~L~~~~l~~~~~~ 109 (521)
.+..++ .|++++|++....
T Consensus 272 ~~~~~e~~Li~~~li~~~~~ 291 (305)
T TIGR00635 272 IEDVYEPYLLQIGFLQRTPR 291 (305)
T ss_pred HHHhhhHHHHHcCCcccCCc
Confidence 556677 6999999976554
No 93
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=24.52 E-value=64 Score=26.24 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCccCCChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHH
Q 041519 1 TNILQVPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNEL 51 (521)
Q Consensus 1 ~~~~~~p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l 51 (521)
|+.++.||. +.-.+.|+..+..-+-.+..+-..|........|..+++.|
T Consensus 9 T~~~~~~pk-~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~L 58 (117)
T cd03564 9 TSHDEAPPK-DKHVRKIIAGTSSSPASIPSFASALSRRLLDRNWVVVLKAL 58 (117)
T ss_pred cCCCCCCCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Confidence 677889998 45556677777765666666666655442236688887765
No 94
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=23.19 E-value=1.3e+02 Score=21.46 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHcCCchhHHHHHHHhcCCCCC
Q 041519 9 LNKEIINEVVEECGCLPLAIVTVAASMSGEEE 40 (521)
Q Consensus 9 ~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~ 40 (521)
.+..+--.|++.|+|++=-+-++-+.|++|.+
T Consensus 2 ~~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 2 RFDNMLLSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 45677888999999999999999999999743
No 95
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=22.06 E-value=69 Score=25.29 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=19.5
Q ss_pred HhcCCchhHHHHHHHHHH--------------HhHHHHHHHHcccccccc
Q 041519 73 YHRLKDEKLQQCFLYCAL--------------GHTILNRLVNCCLLESAK 108 (521)
Q Consensus 73 Y~~L~~~~lk~cfl~~s~--------------g~~~~~~L~~~~l~~~~~ 108 (521)
|+.|| ..+|.||--=++ |+.++..+++.|++....
T Consensus 21 FeslP-~emq~Alet~~ld~vnkVl~~M~veeAE~~v~~~~esGi~~~~~ 69 (99)
T PF08564_consen 21 FESLP-PEMQKALETGDLDEVNKVLGKMPVEEAEYHVERCIESGIWSPEA 69 (99)
T ss_dssp HHHS--TT------------HHHHHT--SSSHHHHHHHHHHHTTSS--TT
T ss_pred HHHCC-HHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHhCCcccccc
Confidence 78899 899999988777 899999999999987664
No 96
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=20.98 E-value=4.2e+02 Score=29.75 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=44.9
Q ss_pred HhcCCchhHHHHHHHHHH-----------------HhHHHHHHHHccccc-cccC-CCccccchHHHHHHHHHhc
Q 041519 73 YHRLKDEKLQQCFLYCAL-----------------GHTILNRLVNCCLLE-SAKD-GSCVKMHDLIRDMALRITS 128 (521)
Q Consensus 73 Y~~L~~~~lk~cfl~~s~-----------------g~~~~~~L~~~~l~~-~~~~-~~~~~mhdli~dl~~~i~~ 128 (521)
.+.|| .++|.-.+-||+ |..++++|-++++|- +-++ +.-|+.|.++.|+....-.
T Consensus 266 ld~Lp-~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 266 LDRLP-PELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HhcCC-HHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 46799 899999999998 788999999999874 3333 3789999999999876543
No 97
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=20.61 E-value=1e+02 Score=26.55 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHHhcCCCC--ChHHHHHHHH
Q 041519 10 NKEIINEVVEECGCLPLAIVTVAASMSGEE--EIYEWQNALN 49 (521)
Q Consensus 10 l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~--~~~~W~~~l~ 49 (521)
+.+|++.| |.|-|+.++|++++.+. ..--|.+|..
T Consensus 109 Y~~iA~~i-----G~PsaaRaVg~A~~~n~la~lvPcHRVv~ 145 (178)
T KOG4062|consen 109 YGQIARRI-----GNPSAARAVGSAMAHNNLAILVPCHRVVG 145 (178)
T ss_pred HHHHHHHh-----CCcHHHHHHHHHHccCCCcEEecceeeec
Confidence 44455444 89999999999999851 1234554444
No 98
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=20.26 E-value=7.6e+02 Score=24.11 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCchhHHHHHHH
Q 041519 12 EIINEVVEECGCLPLAIVTVAA 33 (521)
Q Consensus 12 ~i~~~i~~kc~GlPLAi~~lg~ 33 (521)
+....|++.|+|.|-.+..+..
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHH
Confidence 3577888999999965554444
Done!