Query 041519
Match_columns 521
No_of_seqs 314 out of 3715
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 13:24:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-21 8.2E-26 207.5 25.3 156 132-292 14-180 (606)
2 4fcg_A Uncharacterized protein 99.9 1.1E-21 3.6E-26 193.5 18.7 229 152-510 81-319 (328)
3 4ecn_A Leucine-rich repeat pro 99.9 3.3E-22 1.1E-26 219.3 16.6 329 140-504 436-839 (876)
4 4eco_A Uncharacterized protein 99.9 6.2E-22 2.1E-26 212.8 16.3 327 140-502 194-597 (636)
5 2z63_A TOLL-like receptor 4, v 99.9 8.4E-21 2.9E-25 201.7 24.8 160 133-297 11-185 (570)
6 3o6n_A APL1; leucine-rich repe 99.9 1.1E-21 3.8E-26 198.4 16.7 294 150-500 43-347 (390)
7 2z81_A CD282 antigen, TOLL-lik 99.9 4.8E-21 1.7E-25 202.6 22.2 325 137-483 13-409 (549)
8 3v47_A TOLL-like receptor 5B a 99.9 4.1E-21 1.4E-25 198.3 21.0 336 133-500 14-403 (455)
9 2id5_A Lingo-1, leucine rich r 99.9 1.1E-20 3.9E-25 196.2 23.3 297 133-500 15-328 (477)
10 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-20 5E-25 197.6 21.8 123 133-261 4-129 (520)
11 4fmz_A Internalin; leucine ric 99.9 2E-20 6.8E-25 186.1 21.0 289 152-500 44-341 (347)
12 4ecn_A Leucine-rich repeat pro 99.9 1.8E-21 6.2E-26 213.5 14.5 101 199-301 489-607 (876)
13 3bz5_A Internalin-J, INLJ; leu 99.9 4.5E-21 1.5E-25 197.6 16.6 295 149-500 39-347 (457)
14 4eco_A Uncharacterized protein 99.9 1.3E-21 4.3E-26 210.4 12.8 216 167-404 198-467 (636)
15 3t6q_A CD180 antigen; protein- 99.9 5.5E-20 1.9E-24 197.0 25.1 156 133-294 16-182 (606)
16 4fmz_A Internalin; leucine ric 99.9 1.6E-20 5.4E-25 186.8 19.0 290 132-471 47-344 (347)
17 3oja_B Anopheles plasmodium-re 99.8 1.2E-20 4.1E-25 201.5 17.8 293 151-500 50-353 (597)
18 3vq2_A TLR4, TOLL-like recepto 99.8 4.6E-20 1.6E-24 197.5 21.7 137 133-271 36-178 (606)
19 2z81_A CD282 antigen, TOLL-lik 99.8 4.7E-20 1.6E-24 195.1 20.1 168 133-302 30-209 (549)
20 2z7x_B TOLL-like receptor 1, v 99.8 2.7E-19 9.1E-24 188.0 25.4 140 155-301 3-150 (520)
21 2z63_A TOLL-like receptor 4, v 99.8 6.3E-20 2.2E-24 194.9 20.1 138 133-272 32-175 (570)
22 3oja_B Anopheles plasmodium-re 99.8 1.2E-20 4.2E-25 201.4 14.2 272 174-501 49-333 (597)
23 3rgz_A Protein brassinosteroid 99.8 3.2E-20 1.1E-24 203.9 17.6 59 432-500 654-712 (768)
24 1o6v_A Internalin A; bacterial 99.8 1.7E-19 5.9E-24 186.7 20.5 304 153-505 47-388 (466)
25 1o6v_A Internalin A; bacterial 99.8 5.7E-19 1.9E-23 182.8 24.0 304 136-480 53-394 (466)
26 3rgz_A Protein brassinosteroid 99.8 1.8E-19 6.1E-24 198.0 21.0 318 149-500 197-546 (768)
27 3o6n_A APL1; leucine-rich repe 99.8 5.9E-20 2E-24 185.7 15.5 276 174-505 43-331 (390)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.2E-19 1.1E-23 189.2 21.8 124 132-261 34-160 (562)
29 3j0a_A TOLL-like receptor 5; m 99.8 9.8E-19 3.4E-23 194.1 26.4 167 132-302 7-187 (844)
30 1ziw_A TOLL-like receptor 3; i 99.8 5E-19 1.7E-23 192.1 23.3 166 133-303 8-185 (680)
31 3t6q_A CD180 antigen; protein- 99.8 9.7E-19 3.3E-23 187.2 22.9 318 148-485 125-525 (606)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.3E-18 1.1E-22 181.4 24.9 142 153-301 32-181 (562)
33 4g8a_A TOLL-like receptor 4; l 99.8 8.8E-19 3E-23 188.3 19.5 141 135-279 37-182 (635)
34 1xku_A Decorin; proteoglycan, 99.8 1.7E-18 5.7E-23 170.9 18.8 120 153-279 32-154 (330)
35 2id5_A Lingo-1, leucine rich r 99.8 1.1E-18 3.7E-23 181.3 18.2 164 133-299 36-210 (477)
36 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-18 6.6E-23 170.6 18.4 271 153-500 34-328 (332)
37 3v47_A TOLL-like receptor 5B a 99.8 1.5E-18 5E-23 179.1 17.8 312 154-500 12-379 (455)
38 4fcg_A Uncharacterized protein 99.8 6.2E-18 2.1E-22 166.5 20.1 144 130-277 82-236 (328)
39 1ziw_A TOLL-like receptor 3; i 99.8 4.6E-18 1.6E-22 184.5 20.8 161 133-296 29-202 (680)
40 3bz5_A Internalin-J, INLJ; leu 99.8 3.2E-18 1.1E-22 176.3 18.1 302 133-476 46-354 (457)
41 2z80_A TOLL-like receptor 2, v 99.8 9.9E-18 3.4E-22 167.0 18.3 137 137-277 39-181 (353)
42 3j0a_A TOLL-like receptor 5; m 99.8 3.5E-17 1.2E-21 181.6 22.6 308 134-476 29-377 (844)
43 2ft3_A Biglycan; proteoglycan, 99.7 5E-17 1.7E-21 160.5 20.2 257 176-500 33-302 (332)
44 1jl5_A Outer protein YOPM; leu 99.7 5.5E-17 1.9E-21 166.9 20.6 294 133-483 75-382 (454)
45 3zyi_A Leucine-rich repeat-con 99.7 6.7E-17 2.3E-21 166.6 20.0 125 136-264 61-189 (452)
46 1ogq_A PGIP-2, polygalacturona 99.7 8.5E-18 2.9E-22 164.5 12.5 127 152-280 50-184 (313)
47 2z66_A Variable lymphocyte rec 99.7 9.1E-18 3.1E-22 163.8 11.9 137 135-276 13-156 (306)
48 3zyj_A Leucine-rich repeat-con 99.7 1E-16 3.5E-21 164.6 20.3 139 135-277 49-192 (440)
49 2z80_A TOLL-like receptor 2, v 99.7 3.1E-17 1.1E-21 163.4 15.8 167 133-301 56-234 (353)
50 1xku_A Decorin; proteoglycan, 99.7 8.4E-17 2.9E-21 158.7 17.5 275 133-500 35-327 (330)
51 3g06_A SSPH2 (leucine-rich rep 99.7 3.2E-16 1.1E-20 166.5 22.3 117 132-265 43-159 (622)
52 1jl5_A Outer protein YOPM; leu 99.7 4E-16 1.4E-20 160.4 21.2 269 153-478 72-354 (454)
53 2z66_A Variable lymphocyte rec 99.7 5.9E-17 2E-21 158.0 14.1 142 154-301 9-162 (306)
54 3g06_A SSPH2 (leucine-rich rep 99.7 6.4E-17 2.2E-21 171.8 15.4 254 153-474 41-298 (622)
55 2z62_A TOLL-like receptor 4, v 99.7 5E-16 1.7E-20 149.0 16.5 155 135-294 13-178 (276)
56 2xwt_C Thyrotropin receptor; s 99.7 3.2E-16 1.1E-20 147.0 14.6 87 177-264 32-122 (239)
57 4g8a_A TOLL-like receptor 4; l 99.7 2.2E-15 7.5E-20 161.7 22.7 141 156-302 35-186 (635)
58 1ogq_A PGIP-2, polygalacturona 99.7 3.9E-17 1.3E-21 159.8 8.0 104 176-280 50-159 (313)
59 1ozn_A Reticulon 4 receptor; N 99.7 6E-16 2E-20 149.2 15.7 143 133-279 15-162 (285)
60 1ozn_A Reticulon 4 receptor; N 99.7 5.3E-16 1.8E-20 149.6 14.8 122 154-279 13-138 (285)
61 3zyi_A Leucine-rich repeat-con 99.7 6.8E-16 2.3E-20 159.0 15.2 161 133-296 79-249 (452)
62 3zyj_A Leucine-rich repeat-con 99.7 5.4E-16 1.9E-20 159.2 13.9 146 133-280 68-217 (440)
63 1p9a_G Platelet glycoprotein I 99.6 5.7E-15 2E-19 142.6 17.4 123 150-278 8-132 (290)
64 4ay9_X Follicle-stimulating ho 99.6 4.6E-15 1.6E-19 147.4 15.9 66 382-469 190-255 (350)
65 3o53_A Protein LRIM1, AGAP0063 99.6 1.1E-16 3.7E-21 157.0 3.4 118 152-279 34-153 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.6 4.8E-16 1.6E-20 152.3 7.9 118 154-279 12-129 (317)
67 2o6q_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 139.4 15.5 164 133-301 20-193 (270)
68 2z62_A TOLL-like receptor 4, v 99.6 1.9E-14 6.3E-19 138.0 15.1 118 156-278 11-132 (276)
69 4ay9_X Follicle-stimulating ho 99.6 2.6E-14 9E-19 141.9 16.7 237 155-500 12-254 (350)
70 3m19_A Variable lymphocyte rec 99.6 2E-14 6.7E-19 135.8 14.1 164 133-301 18-191 (251)
71 3oja_A Leucine-rich immune mol 99.5 8.4E-15 2.9E-19 152.0 10.4 120 151-280 33-154 (487)
72 1wwl_A Monocyte differentiatio 99.5 7.4E-16 2.5E-20 150.6 2.2 245 151-500 42-304 (312)
73 2o6q_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 134.6 14.4 165 133-300 41-216 (270)
74 3oja_A Leucine-rich immune mol 99.5 1.5E-14 5.1E-19 150.1 11.6 98 174-279 32-129 (487)
75 3e6j_A Variable lymphocyte rec 99.5 6.7E-14 2.3E-18 130.2 14.9 143 134-280 24-169 (229)
76 2a5y_B CED-4; apoptosis; HET: 99.5 7.9E-16 2.7E-20 162.0 1.8 117 7-131 312-472 (549)
77 1h6u_A Internalin H; cell adhe 99.5 6.4E-14 2.2E-18 136.5 13.6 143 151-302 40-186 (308)
78 1z7x_W Ribonuclease inhibitor; 99.5 8.7E-16 3E-20 158.5 0.0 67 391-471 338-409 (461)
79 3ogk_B Coronatine-insensitive 99.5 2.4E-14 8.3E-19 152.5 10.7 146 150-297 162-326 (592)
80 1p9a_G Platelet glycoprotein I 99.5 4.3E-14 1.5E-18 136.4 11.4 163 133-302 14-185 (290)
81 2v9t_B SLIT homolog 2 protein 99.5 1.6E-13 5.4E-18 126.8 14.0 144 133-280 15-162 (220)
82 2o6s_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 123.3 15.2 142 135-280 13-158 (208)
83 1h6u_A Internalin H; cell adhe 99.5 2.3E-13 7.8E-18 132.6 14.8 176 133-322 45-224 (308)
84 2xwt_C Thyrotropin receptor; s 99.5 4E-14 1.4E-18 132.6 8.8 198 141-347 23-235 (239)
85 3m19_A Variable lymphocyte rec 99.5 4.6E-13 1.6E-17 126.3 15.0 146 133-280 39-189 (251)
86 1wwl_A Monocyte differentiatio 99.5 8.6E-14 2.9E-18 135.9 9.7 109 151-261 94-215 (312)
87 3rfs_A Internalin B, repeat mo 99.5 3.4E-13 1.2E-17 128.9 13.6 126 149-278 60-189 (272)
88 2v70_A SLIT-2, SLIT homolog 2 99.5 4.3E-13 1.5E-17 123.8 13.5 144 133-280 15-163 (220)
89 4ezg_A Putative uncharacterize 99.4 2.1E-13 7.1E-18 123.7 9.9 144 149-300 41-192 (197)
90 2ast_B S-phase kinase-associat 99.4 8E-14 2.7E-18 137.5 7.7 126 152-280 70-205 (336)
91 2xot_A Amphoterin-induced prot 99.4 7.1E-13 2.4E-17 132.1 13.8 164 133-301 22-201 (361)
92 3ogk_B Coronatine-insensitive 99.4 4.4E-14 1.5E-18 150.5 4.9 40 433-472 402-448 (592)
93 3e6j_A Variable lymphocyte rec 99.4 4.6E-13 1.6E-17 124.5 11.2 141 154-300 21-170 (229)
94 1h6t_A Internalin B; cell adhe 99.4 8.6E-13 3E-17 127.3 13.5 160 151-323 45-208 (291)
95 1h6t_A Internalin B; cell adhe 99.4 7.9E-13 2.7E-17 127.6 12.4 160 133-302 50-213 (291)
96 3sfz_A APAF-1, apoptotic pepti 99.4 1.9E-13 6.5E-18 158.2 9.3 122 6-130 302-452 (1249)
97 2v9t_B SLIT homolog 2 protein 99.4 5.5E-13 1.9E-17 123.1 10.2 140 155-300 14-163 (220)
98 3rfs_A Internalin B, repeat mo 99.4 2.2E-12 7.4E-17 123.3 14.5 145 133-280 67-215 (272)
99 2ast_B S-phase kinase-associat 99.4 4.3E-13 1.5E-17 132.2 9.8 118 153-275 48-173 (336)
100 2v70_A SLIT-2, SLIT homolog 2 99.4 5.6E-13 1.9E-17 123.1 9.9 142 154-301 13-165 (220)
101 1xeu_A Internalin C; cellular 99.4 6.8E-13 2.3E-17 126.0 10.4 143 148-300 37-183 (263)
102 4ezg_A Putative uncharacterize 99.4 1.1E-12 3.7E-17 118.9 11.2 142 133-280 48-191 (197)
103 2ell_A Acidic leucine-rich nuc 99.4 1.1E-12 3.8E-17 115.6 8.6 124 152-280 24-157 (168)
104 1z7x_W Ribonuclease inhibitor; 99.4 8.6E-14 2.9E-18 143.5 1.5 62 198-260 110-183 (461)
105 2p1m_B Transport inhibitor res 99.4 3.5E-14 1.2E-18 151.3 -1.7 127 151-277 104-242 (594)
106 2je0_A Acidic leucine-rich nuc 99.4 7.6E-13 2.6E-17 114.1 7.1 122 152-278 17-148 (149)
107 2o6s_A Variable lymphocyte rec 99.3 4.7E-12 1.6E-16 115.7 11.8 139 154-298 9-157 (208)
108 4glp_A Monocyte differentiatio 99.3 2.4E-12 8.1E-17 125.5 10.4 123 177-301 92-236 (310)
109 1m9s_A Internalin B; cell inva 99.3 3.9E-12 1.3E-16 134.9 11.7 143 151-302 42-188 (605)
110 1w8a_A SLIT protein; signaling 99.3 7.6E-12 2.6E-16 112.8 11.6 121 155-280 11-136 (192)
111 3cvr_A Invasion plasmid antige 99.3 1E-11 3.4E-16 130.4 14.1 98 153-264 60-157 (571)
112 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.3E-16 111.4 12.9 120 155-280 13-136 (193)
113 3goz_A Leucine-rich repeat-con 99.3 6.7E-13 2.3E-17 132.4 4.7 129 150-280 20-177 (362)
114 2p1m_B Transport inhibitor res 99.3 4.9E-13 1.7E-17 142.4 3.5 209 151-366 65-324 (594)
115 1m9s_A Internalin B; cell inva 99.3 4.5E-12 1.5E-16 134.4 10.8 156 137-302 51-210 (605)
116 2ell_A Acidic leucine-rich nuc 99.3 1.8E-11 6.3E-16 107.7 12.2 131 132-266 27-166 (168)
117 2ca6_A RAN GTPase-activating p 99.3 4.3E-13 1.5E-17 135.0 1.4 90 144-235 24-133 (386)
118 2o6r_A Variable lymphocyte rec 99.3 3.8E-11 1.3E-15 106.6 13.8 120 155-279 10-133 (177)
119 2wfh_A SLIT homolog 2 protein 99.3 2.4E-11 8.3E-16 109.5 12.5 123 133-260 14-139 (193)
120 2xot_A Amphoterin-induced prot 99.3 9.9E-12 3.4E-16 123.8 10.5 146 133-280 43-199 (361)
121 2o6r_A Variable lymphocyte rec 99.3 3.1E-11 1.1E-15 107.2 12.7 124 134-261 12-138 (177)
122 2ca6_A RAN GTPase-activating p 99.3 6.3E-13 2.2E-17 133.8 1.4 126 174-302 30-200 (386)
123 1a9n_A U2A', U2A'; complex (nu 99.3 7.5E-12 2.6E-16 111.1 7.9 125 151-280 18-150 (176)
124 1xeu_A Internalin C; cellular 99.3 3.1E-11 1E-15 114.6 12.5 138 133-280 45-182 (263)
125 1w8a_A SLIT protein; signaling 99.3 3.7E-11 1.3E-15 108.2 12.5 124 133-260 12-139 (192)
126 1dce_A Protein (RAB geranylger 99.2 2E-11 7E-16 128.5 10.6 107 153-265 442-551 (567)
127 3goz_A Leucine-rich repeat-con 99.2 4.1E-12 1.4E-16 126.6 5.0 122 157-280 3-148 (362)
128 4b8c_D Glucose-repressible alc 99.2 1.7E-11 5.8E-16 133.1 10.0 106 172-280 220-326 (727)
129 4glp_A Monocyte differentiatio 99.2 8.8E-12 3E-16 121.4 5.7 195 120-323 82-302 (310)
130 2r9u_A Variable lymphocyte rec 99.2 4.4E-11 1.5E-15 105.9 9.7 108 154-266 14-124 (174)
131 4b8c_D Glucose-repressible alc 99.2 1.5E-11 5.1E-16 133.5 7.7 119 144-266 216-336 (727)
132 1a9n_A U2A', U2A'; complex (nu 99.2 3.1E-11 1.1E-15 107.1 7.8 125 133-261 23-154 (176)
133 3cvr_A Invasion plasmid antige 99.2 1.3E-10 4.5E-15 121.9 12.8 109 152-278 80-188 (571)
134 1z6t_A APAF-1, apoptotic prote 99.2 3.6E-11 1.2E-15 127.9 8.2 116 9-127 305-449 (591)
135 1vt4_I APAF-1 related killer D 99.2 2.8E-11 9.6E-16 131.1 7.0 90 21-124 323-437 (1221)
136 3g39_A Variable lymphocyte rec 99.1 1.9E-10 6.5E-15 101.4 10.6 105 154-263 11-118 (170)
137 1dce_A Protein (RAB geranylger 99.1 1.2E-10 4.2E-15 122.6 10.6 98 178-279 443-542 (567)
138 2je0_A Acidic leucine-rich nuc 99.1 1.7E-10 5.9E-15 99.2 9.7 119 133-256 21-149 (149)
139 1ds9_A Outer arm dynein; leuci 99.1 3.1E-12 1.1E-16 116.0 -5.0 122 154-280 25-150 (198)
140 2r9u_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 96.5 11.4 105 133-241 16-121 (174)
141 1ds9_A Outer arm dynein; leuci 99.0 4.1E-12 1.4E-16 115.2 -6.0 116 141-262 37-155 (198)
142 3g39_A Variable lymphocyte rec 99.0 2.2E-09 7.5E-14 94.5 11.1 100 133-235 13-113 (170)
143 2ifg_A High affinity nerve gro 98.8 2.6E-08 9E-13 98.3 10.7 103 155-261 11-117 (347)
144 2ifg_A High affinity nerve gro 98.7 6E-08 2.1E-12 95.7 9.6 99 135-235 14-114 (347)
145 3sb4_A Hypothetical leucine ri 98.6 6.9E-08 2.4E-12 94.5 7.4 64 151-216 48-139 (329)
146 4fdw_A Leucine rich hypothetic 98.5 3.8E-06 1.3E-10 84.3 18.0 119 152-278 113-234 (401)
147 3sb4_A Hypothetical leucine ri 98.4 1.4E-06 4.7E-11 85.2 10.7 91 200-294 225-326 (329)
148 3un9_A NLR family member X1; l 98.2 5.8E-08 2E-12 96.6 -3.6 148 153-303 73-253 (372)
149 4fdw_A Leucine rich hypothetic 98.1 3.9E-05 1.3E-09 76.9 14.1 227 152-403 135-379 (401)
150 4fs7_A Uncharacterized protein 98.0 0.00026 8.7E-09 70.8 17.6 56 151-209 70-125 (394)
151 3un9_A NLR family member X1; l 97.9 2E-06 6.8E-11 85.5 0.5 126 175-303 71-225 (372)
152 3e4g_A ATP synthase subunit S, 97.9 1.4E-05 4.7E-10 69.6 5.3 94 166-261 52-154 (176)
153 3e4g_A ATP synthase subunit S, 97.7 7.2E-05 2.5E-09 65.0 7.2 98 143-240 52-155 (176)
154 4fs7_A Uncharacterized protein 97.6 0.0011 3.8E-08 66.1 16.3 128 141-276 82-214 (394)
155 3rw6_A Nuclear RNA export fact 97.5 0.00015 5.1E-09 67.9 6.4 82 198-280 167-261 (267)
156 3rw6_A Nuclear RNA export fact 97.4 9.9E-05 3.4E-09 69.1 4.0 78 174-253 168-257 (267)
157 2ra8_A Uncharacterized protein 97.3 0.00013 4.4E-09 71.9 4.7 124 174-302 170-320 (362)
158 2ra8_A Uncharacterized protein 97.3 0.00016 5.4E-09 71.2 5.3 15 246-260 278-292 (362)
159 4gt6_A Cell surface protein; l 97.3 0.0068 2.3E-07 60.3 16.5 99 154-256 66-169 (394)
160 1io0_A Tropomodulin; LRR prote 97.2 0.00016 5.6E-09 63.9 3.4 84 174-260 34-136 (185)
161 1io0_A Tropomodulin; LRR prote 97.1 0.00014 4.7E-09 64.4 2.2 107 151-260 35-164 (185)
162 4gt6_A Cell surface protein; l 97.1 0.013 4.5E-07 58.2 16.4 105 148-257 83-192 (394)
163 3rfe_A Platelet glycoprotein I 96.3 0.0068 2.3E-07 49.9 6.5 56 155-214 11-68 (130)
164 4h09_A Hypothetical leucine ri 95.5 0.081 2.8E-06 52.0 11.2 99 174-277 215-317 (379)
165 4h09_A Hypothetical leucine ri 95.4 0.063 2.1E-06 52.8 10.0 122 150-277 215-340 (379)
166 3rfe_A Platelet glycoprotein I 93.4 0.11 3.8E-06 42.4 5.5 54 133-188 12-67 (130)
167 1pgv_A TMD-1, tropomodulin TMD 74.0 2.7 9.2E-05 36.8 4.0 59 198-257 67-136 (197)
168 2qen_A Walker-type ATPase; unk 70.6 11 0.00038 35.6 8.0 25 12-36 226-250 (350)
169 1pgv_A TMD-1, tropomodulin TMD 66.7 2.5 8.5E-05 37.0 2.1 104 152-257 41-167 (197)
170 2lz0_A Uncharacterized protein 59.7 10 0.00035 28.9 4.2 48 162-211 6-53 (100)
171 2fna_A Conserved hypothetical 59.3 21 0.0007 33.8 7.4 23 15-37 233-255 (357)
172 1hqc_A RUVB; extended AAA-ATPa 52.8 21 0.00073 33.3 6.2 40 12-51 191-238 (324)
173 2vda_B Maltoporin; sugar trans 20.7 45 0.0016 17.8 1.3 18 20-37 7-24 (28)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=2.4e-21 Score=207.50 Aligned_cols=156 Identities=22% Similarity=0.280 Sum_probs=132.0
Q ss_pred cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
..+...+..+..+|... .+++++|++++|.+..++...+.++++|++|++++|. +..+++..|+++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTTS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCCC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCC
Confidence 34566677788888743 4789999999999999988777799999999999998 77887666799999999999999
Q ss_pred CCCcc-CccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCc--ccCccccCCCCCcccccccc------
Q 041519 212 SIEVL-PNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIE--EVPEGMEMLENLSHLSLFMA------ 280 (521)
Q Consensus 212 ~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~~~~~------ 280 (521)
.++.+ |.+++++.+|++|++++|. +..+| .++++.+|++|++++|.+. .+|..++++++|++|++...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred cccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 99976 8889999999999999986 66665 7999999999999999887 57999999999999988754
Q ss_pred hHHHHhhHhccc
Q 041519 281 AEEAARLSDRLD 292 (521)
Q Consensus 281 ~~~i~~L~~~L~ 292 (521)
+..++.++ +|+
T Consensus 170 ~~~~~~l~-~L~ 180 (606)
T 3vq2_A 170 VNDLQFLR-ENP 180 (606)
T ss_dssp TTTTHHHH-HCT
T ss_pred hhhhhhhh-ccc
Confidence 44566666 655
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.1e-21 Score=193.54 Aligned_cols=229 Identities=24% Similarity=0.347 Sum_probs=171.6
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 231 (521)
..++.|++.++.+..+|..++ .+++|++|++++|. +..+|..+ +.+++|++|++++|.+..+|..++.+.+|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~-l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAG-LMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGG-GGTTCSEEEEESSC-CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhh-hCCCCCEEECCCCC-ccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 478899999999998888877 68899999999888 66888765 8889999999999988888888889999999999
Q ss_pred ccCCCCCccC-CccC---------CCCCCEEEeeCCcCcccCccccCCCCCcccccccchHHHHhhHhcccceEEEeccc
Q 041519 232 RWCGILKRVP-SLAK---------LLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAAEEAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 232 ~~~~~l~~lp-~~~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~i~~L~~~L~~L~~~~~~~ 301 (521)
++|..+..+| .++. +.+|++|++++|.++.+|..++++++|+ +|++..+.+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~-------------------~L~L~~N~l 218 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK-------------------SLKIRNSPL 218 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCC-------------------EEEEESSCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCC-------------------EEEccCCCC
Confidence 9888788888 6654 7888888888887777776555444333 332221111
Q ss_pred cchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCccccceEEEecccCcccccccccCCCc
Q 041519 302 NDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQG 381 (521)
Q Consensus 302 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~ 381 (521)
T Consensus 219 -------------------------------------------------------------------------------- 218 (328)
T 4fcg_A 219 -------------------------------------------------------------------------------- 218 (328)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCC
Q 041519 382 LNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNS 461 (521)
Q Consensus 382 l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~ 461 (521)
..+|.. +..+++|++|++++|.....++... ..+++|++|++.+|..+..++. ....+++
T Consensus 219 -~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~----------------~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~ 278 (328)
T 4fcg_A 219 -SALGPA-IHHLPKLEELDLRGCTALRNYPPIF----------------GGRAPLKRLILKDCSNLLTLPL--DIHRLTQ 278 (328)
T ss_dssp -CCCCGG-GGGCTTCCEEECTTCTTCCBCCCCT----------------TCCCCCCEEECTTCTTCCBCCT--TGGGCTT
T ss_pred -CcCchh-hccCCCCCEEECcCCcchhhhHHHh----------------cCCCCCCEEECCCCCchhhcch--hhhcCCC
Confidence 011111 3567788888888887666654332 5688999999999888888876 4567799
Q ss_pred ccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEeehhhccccccC
Q 041519 462 LQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWESLEWD 510 (521)
Q Consensus 462 L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~~~~~~~l~~~ 510 (521)
|+.|++++|+.+..+|..+..+++ |+.+.+.......+.+.
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~--------L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPA--------NCIILVPPHLQAQLDQH 319 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCT--------TCEEECCGGGSCC----
T ss_pred CCEEeCCCCCchhhccHHHhhccC--------ceEEeCCHHHHHHHhhh
Confidence 999999999999999998877766 99999886666666554
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.3e-22 Score=219.34 Aligned_cols=329 Identities=14% Similarity=0.173 Sum_probs=223.8
Q ss_pred ccccCCCcccccCCccEEEeecCCCCC------------------CCCCc-CCCCCCccEEEcccCcCCCCCchhHhhCC
Q 041519 140 RLLKFPGEQEWEENLERVSLMENDFEE------------------IPSNM-SPHCEILSTLLLQHNKYLQRIPECFFVHM 200 (521)
Q Consensus 140 ~~~~~p~~~~~~~~l~~L~l~~~~~~~------------------l~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l 200 (521)
.+..+|.....+++++.|++++|.+.. +|..+ +..+++|++|++++|.....+|..+ +++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGC
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCC
Confidence 334478888888999999999999998 88876 3479999999999998778888765 899
Q ss_pred CCCcEEEccCCC-CCc--cCccccCCc-------ccceeecccCCCCCccCC---ccCCCCCCEEEeeCCcCcccCcccc
Q 041519 201 HGLKVLNLCHTS-IEV--LPNSVSDLT-------NLRSLLLRWCGILKRVPS---LAKLLALQYLDLEGTWIEEVPEGME 267 (521)
Q Consensus 201 ~~L~~L~L~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~l~~lp~---~~~l~~L~~L~l~~~~l~~lp~~i~ 267 (521)
++|++|++++|. ++. +|..++.+. +|++|++++|. +..+|. ++++.+|++|++++|.+..+| .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence 999999999998 874 888777776 99999999986 678886 899999999999999888999 899
Q ss_pred CCCCCcccccccc-----hHHHHhhHhc-ccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCC--C----cccc
Q 041519 268 MLENLSHLSLFMA-----AEEAARLSDR-LDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRG--F----LEVD 335 (521)
Q Consensus 268 ~l~~L~~L~~~~~-----~~~i~~L~~~-L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~--~----~~~~ 335 (521)
.+++|++|++... +..+..++ + |+.|++..+.+..+...+.. ....+|+.+.+........ . ....
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~-~~L~~L~Ls~N~L~~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPEDFCAFT-DQVEGLGFSHNKLKYIPNIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTTSCEEC-TTCCEEECCSSCCCSCCSCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred CCCcceEEECcCCccccchHHHhhcc-ccCCEEECcCCCCCcCchhhhc-cccCCCCEEECcCCcCCCccccchhhhccc
Confidence 9999999988754 66788888 8 99999887766543322111 1122355555543222110 0 0111
Q ss_pred ceeeeeeeeeecCccccc------CccccceEEEecccCcccccccc------------------cCCCcccccccchh-
Q 041519 336 KSVRLFACKICETEETIV------LPEDVQYLEMFGVDDVASLNDVL------------------PREQGLNLFSLRLL- 390 (521)
Q Consensus 336 ~~~~L~~L~i~~~~~~~~------~p~~L~~L~l~~~~~l~~l~~~~------------------~~~~~l~~~p~~~l- 390 (521)
...+|+.|.++++..... ..+.|+.|+++++. +..++..+ -..+.+..+|..+.
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 234788888877744311 13567888877652 22222211 11123344454442
Q ss_pred hccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcc------cccccccCCCcccCCCccE
Q 041519 391 PALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLR------EFKSICSDNGVLVCNSLQE 464 (521)
Q Consensus 391 ~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~------~L~~~~~~~~~~~~p~L~~ 464 (521)
..+++|+.|+|+++. +..++... ..+++|+.|++++++ -...++. ....+++|+.
T Consensus 750 ~~l~~L~~L~Ls~N~-L~~lp~~l----------------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~ 810 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNC-FSSFPTQP----------------LNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQ 810 (876)
T ss_dssp TTCTTCCEEECCSSC-CSSCCCGG----------------GGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCE
T ss_pred ccCCCcCEEEeCCCC-CCccchhh----------------hcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCE
Confidence 367777777777663 33343222 457888888887633 2233443 4445788888
Q ss_pred EEEecCCCcccccCcCcccCCCCCCCCCCceEEEeehhhc
Q 041519 465 IEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELW 504 (521)
Q Consensus 465 L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~~~~~ 504 (521)
|++++|. +..+|..+ +++|+.|++...-+
T Consensus 811 L~Ls~N~-L~~Ip~~l----------~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 811 LQIGSND-IRKVDEKL----------TPQLYILDIADNPN 839 (876)
T ss_dssp EECCSSC-CCBCCSCC----------CSSSCEEECCSCTT
T ss_pred EECCCCC-CCccCHhh----------cCCCCEEECCCCCC
Confidence 8888886 47888765 34588888884333
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=6.2e-22 Score=212.79 Aligned_cols=327 Identities=13% Similarity=0.187 Sum_probs=227.8
Q ss_pred ccccCCCcccccCCccEEEeecCCCCC------------------CCCCcC-CCCCCccEEEcccCcCCCCCchhHhhCC
Q 041519 140 RLLKFPGEQEWEENLERVSLMENDFEE------------------IPSNMS-PHCEILSTLLLQHNKYLQRIPECFFVHM 200 (521)
Q Consensus 140 ~~~~~p~~~~~~~~l~~L~l~~~~~~~------------------l~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l 200 (521)
.+..+|.....++++++|++++|.+.. +|..+. .++++|++|++++|.....+|..+ +++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l 272 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KAL 272 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTC
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcC
Confidence 444578888888999999999999998 887763 278999999999998777888775 899
Q ss_pred CCCcEEEccCCC-CC--ccCccccCC------cccceeecccCCCCCccCC---ccCCCCCCEEEeeCCcCc-ccCcccc
Q 041519 201 HGLKVLNLCHTS-IE--VLPNSVSDL------TNLRSLLLRWCGILKRVPS---LAKLLALQYLDLEGTWIE-EVPEGME 267 (521)
Q Consensus 201 ~~L~~L~L~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~~l~~lp~---~~~l~~L~~L~l~~~~l~-~lp~~i~ 267 (521)
++|++|++++|. ++ .+|..++.+ .+|++|++++|. +..+|. ++++.+|++|++++|.+. .+| .++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 88 489888887 999999999986 678885 899999999999999998 899 899
Q ss_pred CCCCCcccccccc-----hHHHHhhHhc-ccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCC-cccc-----
Q 041519 268 MLENLSHLSLFMA-----AEEAARLSDR-LDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGF-LEVD----- 335 (521)
Q Consensus 268 ~l~~L~~L~~~~~-----~~~i~~L~~~-L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-~~~~----- 335 (521)
.+++|++|++... +..++.++ + |+.|++..+.+..+...+. ...+.+|+.+.+......... ....
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~-~~L~~L~Ls~N~l~~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFT-EQVENLSFAHNKLKYIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEEC-TTCCEEECCSSCCSSCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccccccHhhhhhc-ccCcEEEccCCcCcccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 9999999988754 66788888 8 9999988776654332221 112235555555432221110 0011
Q ss_pred --ceeeeeeeeeecCccccc------CccccceEEEecccCccccccc------------------ccCCCcccccccch
Q 041519 336 --KSVRLFACKICETEETIV------LPEDVQYLEMFGVDDVASLNDV------------------LPREQGLNLFSLRL 389 (521)
Q Consensus 336 --~~~~L~~L~i~~~~~~~~------~p~~L~~L~l~~~~~l~~l~~~------------------~~~~~~l~~~p~~~ 389 (521)
...+|+.|.++++..... ..+.|+.|+++++.- ..++.. --..+.+..+|..+
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence 344788888877744311 135677887776532 222211 11123344555544
Q ss_pred h-hccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcc------cccccccCCCcccCCCc
Q 041519 390 L-PALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLR------EFKSICSDNGVLVCNSL 462 (521)
Q Consensus 390 l-~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~------~L~~~~~~~~~~~~p~L 462 (521)
. ..+++|++|+|+++.. ..++... ..+++|++|+++++. -...++. ....+++|
T Consensus 508 ~~~~l~~L~~L~Ls~N~l-~~ip~~~----------------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L 568 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSF-SKFPTQP----------------LNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSL 568 (636)
T ss_dssp STTTCTTCCEEECCSSCC-SSCCCGG----------------GGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSC
T ss_pred hhccCCCcCEEECCCCCC-CCcChhh----------------hcCCCCCEEECCCCcccccCcccccChH--HHhcCCCC
Confidence 3 3777888888877643 3344322 457888888885432 2334444 44567889
Q ss_pred cEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEeehh
Q 041519 463 QEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKE 502 (521)
Q Consensus 463 ~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~~~ 502 (521)
++|++++|. ++.+|..+ +++|+.|++...
T Consensus 569 ~~L~Ls~N~-l~~ip~~~----------~~~L~~L~Ls~N 597 (636)
T 4eco_A 569 TQLQIGSND-IRKVNEKI----------TPNISVLDIKDN 597 (636)
T ss_dssp CEEECCSSC-CCBCCSCC----------CTTCCEEECCSC
T ss_pred CEEECCCCc-CCccCHhH----------hCcCCEEECcCC
Confidence 999998887 48888765 256999988843
No 5
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=8.4e-21 Score=201.68 Aligned_cols=160 Identities=21% Similarity=0.236 Sum_probs=134.6
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.....+..+..+|.. ..+++++|++++|.++.++...+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~--l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCSSCCSS--SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCccccCCC--ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc
Confidence 445556677788864 34689999999999999988777799999999999998 888887777999999999999999
Q ss_pred CCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc--cCccccCCCCCcccccccc------h
Q 041519 213 IEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE--VPEGMEMLENLSHLSLFMA------A 281 (521)
Q Consensus 213 l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~~~~------~ 281 (521)
+..+| ..++.+.+|++|++++|. +..+| .++++.+|++|++++|.+.. +|..++++++|++|++... +
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred CCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 98765 788999999999999985 88887 59999999999999998875 7899999999999998754 4
Q ss_pred HHHHhhHhcc----cceEEE
Q 041519 282 EEAARLSDRL----DTFVGY 297 (521)
Q Consensus 282 ~~i~~L~~~L----~~L~~~ 297 (521)
..++.++ +| +.+++.
T Consensus 167 ~~~~~l~-~L~~~~~~L~l~ 185 (570)
T 2z63_A 167 TDLRVLH-QMPLLNLSLDLS 185 (570)
T ss_dssp GGGHHHH-TCTTCCCEEECT
T ss_pred HHccchh-ccchhhhhcccC
Confidence 5677787 77 455443
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-21 Score=198.39 Aligned_cols=294 Identities=15% Similarity=0.155 Sum_probs=206.8
Q ss_pred ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccce
Q 041519 150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRS 228 (521)
Q Consensus 150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~ 228 (521)
..++++++++.++.+..+|..++..+++|++|++++|. +..++...|+.+++|++|++++|.+..+| ..++.+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34789999999999999998877788999999999998 77777766689999999999999988664 55789999999
Q ss_pred eecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc---hHHHHhhHhcccceEEEecccc
Q 041519 229 LLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA---AEEAARLSDRLDTFVGYFSTLN 302 (521)
Q Consensus 229 L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~---~~~i~~L~~~L~~L~~~~~~~~ 302 (521)
|++++|. +..+| . ++++.+|++|++++|.+..++. .++.+++|++|++... ...++.++ +|+.|++..+...
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLS 199 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCT-TCSEEECCSSCCS
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccccccc-ccceeeccccccc
Confidence 9999985 88888 5 6889999999999998887754 4888899999888754 22456677 7888777655443
Q ss_pred chhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEEecccCcccccccccC
Q 041519 303 DFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEMFGVDDVASLNDVLPR 378 (521)
Q Consensus 303 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l~~~~~l~~l~~~~~~ 378 (521)
.. ....+|+.+.+..... ...+.....+|+.|.++++... ....+.|+.|+++++
T Consensus 200 ~~-------~~~~~L~~L~l~~n~l--~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n------------ 258 (390)
T 3o6n_A 200 TL-------AIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN------------ 258 (390)
T ss_dssp EE-------ECCSSCSEEECCSSCC--CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS------------
T ss_pred cc-------CCCCcceEEECCCCee--eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCC------------
Confidence 21 1223444444322111 1111112235666666665321 112356777776654
Q ss_pred CCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCccc
Q 041519 379 EQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLV 458 (521)
Q Consensus 379 ~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~ 458 (521)
.+...+...+..+++|++|+++++ .+..++.. ...+++|++|++.++ ++..++. ....
T Consensus 259 --~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~----------------~~~l~~L~~L~L~~n-~l~~~~~--~~~~ 316 (390)
T 3o6n_A 259 --ELEKIMYHPFVKMQRLERLYISNN-RLVALNLY----------------GQPIPTLKVLDLSHN-HLLHVER--NQPQ 316 (390)
T ss_dssp --CCCEEESGGGTTCSSCCEEECCSS-CCCEEECS----------------SSCCTTCCEEECCSS-CCCCCGG--GHHH
T ss_pred --cCCCcChhHccccccCCEEECCCC-cCcccCcc----------------cCCCCCCCEEECCCC-cceecCc--cccc
Confidence 223333334577889999999887 34444322 246899999999986 5777765 4556
Q ss_pred CCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 459 CNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 459 ~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
+++|++|++.+|+ ++.+|. . .+++|+.|++.
T Consensus 317 l~~L~~L~L~~N~-i~~~~~--~--------~~~~L~~L~l~ 347 (390)
T 3o6n_A 317 FDRLENLYLDHNS-IVTLKL--S--------THHTLKNLTLS 347 (390)
T ss_dssp HTTCSEEECCSSC-CCCCCC--C--------TTCCCSEEECC
T ss_pred cCcCCEEECCCCc-cceeCc--h--------hhccCCEEEcC
Confidence 7999999999986 677763 2 26669999997
No 7
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=4.8e-21 Score=202.62 Aligned_cols=325 Identities=16% Similarity=0.147 Sum_probs=188.6
Q ss_pred cCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519 137 AGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216 (521)
Q Consensus 137 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l 216 (521)
.+..+..+|... .+++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+.+++|++|++++|.+..+
T Consensus 13 ~~~~l~~ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 13 RSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp TTSCCSSCCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CCCccccccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCcc
Confidence 345566677643 3678888888888887766555678888888888887 6666655567888888888888887766
Q ss_pred Ccc-ccCCcccceeecccCCCCCc--cC-CccCCCCCCEEEeeCCc-CcccC-ccccCCCCCcccccccc------hHHH
Q 041519 217 PNS-VSDLTNLRSLLLRWCGILKR--VP-SLAKLLALQYLDLEGTW-IEEVP-EGMEMLENLSHLSLFMA------AEEA 284 (521)
Q Consensus 217 p~~-i~~L~~L~~L~l~~~~~l~~--lp-~~~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~~~~~------~~~i 284 (521)
|.. ++.+.+|++|++++|. +.. .| .++++.+|++|++++|. +..+| ..++++++|++|++... +..+
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 654 7788888888888875 553 35 67788888888888885 66666 35777888888777643 5566
Q ss_pred HhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCC---cc-ccceeeeeeeeeecCcccc--------
Q 041519 285 ARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGF---LE-VDKSVRLFACKICETEETI-------- 352 (521)
Q Consensus 285 ~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~---~~-~~~~~~L~~L~i~~~~~~~-------- 352 (521)
+.++ +|++|++..+.......... ..+.+|+.+.+......... .. .....+|+.+.+.++....
T Consensus 169 ~~l~-~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 169 KSIR-DIHHLTLHLSESAFLLEIFA--DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTCS-EEEEEEEECSBSTTHHHHHH--HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hccc-cCceEecccCcccccchhhH--hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 7777 77777776555443332221 12445555554432221110 00 0112234444443331100
Q ss_pred --cCccccceEEEecccCc------------------------------c---------------cccccccCCCccccc
Q 041519 353 --VLPEDVQYLEMFGVDDV------------------------------A---------------SLNDVLPREQGLNLF 385 (521)
Q Consensus 353 --~~p~~L~~L~l~~~~~l------------------------------~---------------~l~~~~~~~~~l~~~ 385 (521)
.....|+.+++.+|.-. . .+..+--..+.+..+
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i 325 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence 01123333333333110 0 000000011233445
Q ss_pred ccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccccccc-CCCcccCCCccE
Q 041519 386 SLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICS-DNGVLVCNSLQE 464 (521)
Q Consensus 386 p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~-~~~~~~~p~L~~ 464 (521)
|.+++..+++|++|+++++.....++... ...+.+++|++|+++++ +++.++. ......+++|++
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNS-------------ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHH-------------TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCE
T ss_pred CHHHHhcCccccEEEccCCccccccccch-------------hhhhccccCcEEEccCC-cccccccchhhhhcCCCCCE
Confidence 66665678889999998886554443210 01145788888888875 4554431 001335678888
Q ss_pred EEEecCCCcccccCcCccc
Q 041519 465 IEVYNCPKLKRLSLSLPLL 483 (521)
Q Consensus 465 L~i~~C~~L~~lP~~~~~l 483 (521)
|++++| +++.+|..+..+
T Consensus 392 L~Ls~N-~l~~lp~~~~~~ 409 (549)
T 2z81_A 392 LDISRN-TFHPMPDSCQWP 409 (549)
T ss_dssp EECTTC-CCCCCCSCCCCC
T ss_pred EECCCC-CCccCChhhccc
Confidence 888887 577777655443
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=4.1e-21 Score=198.32 Aligned_cols=336 Identities=18% Similarity=0.175 Sum_probs=207.1
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|. ..+++++|++++|.+..+++..+..+++|++|++++|.....+++..|.++++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 34556667778886 447899999999999998666667999999999999985457777667999999999999999
Q ss_pred CCcc-CccccCCcccceeecccCCCCCc-cC-C--ccCCCCCCEEEeeCCcCccc-Ccc-ccCCCCCcccccccc-----
Q 041519 213 IEVL-PNSVSDLTNLRSLLLRWCGILKR-VP-S--LAKLLALQYLDLEGTWIEEV-PEG-MEMLENLSHLSLFMA----- 280 (521)
Q Consensus 213 l~~l-p~~i~~L~~L~~L~l~~~~~l~~-lp-~--~~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~~~~~----- 280 (521)
+..+ |..++++.+|++|++++|. +.. .| . ++.+.+|++|++++|.+..+ |.. ++++++|++|++...
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 9865 7889999999999999987 553 44 4 89999999999999998876 555 889999999988754
Q ss_pred -hHHHHhh--HhcccceEEEeccccchhhh------hhccCCCCCCcceeeeecCCCCCC----ccccceeeeeeeeeec
Q 041519 281 -AEEAARL--SDRLDTFVGYFSTLNDFNIY------VKSTDGRGSKNYCLLLSASGKRGF----LEVDKSVRLFACKICE 347 (521)
Q Consensus 281 -~~~i~~L--~~~L~~L~~~~~~~~~~~~~------~~~~~~l~~L~~l~~~~~~~~~~~----~~~~~~~~L~~L~i~~ 347 (521)
+..++.+ . +|+.|++..+........ ......+.+|+.+.+......... .......+|+.+.+.+
T Consensus 170 ~~~~l~~l~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 170 CEEDLLNFQGK-HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CTTTSGGGTTC-EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred Chhhhhccccc-cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 3344444 3 444444433322221100 000111223333332211100000 0000002333333332
Q ss_pred Cccc------------------ccCccccceEEEecccCcccccccccC----------CCcccccccchhhccCCCcEE
Q 041519 348 TEET------------------IVLPEDVQYLEMFGVDDVASLNDVLPR----------EQGLNLFSLRLLPALQNLEVL 399 (521)
Q Consensus 348 ~~~~------------------~~~p~~L~~L~l~~~~~l~~l~~~~~~----------~~~l~~~p~~~l~~L~~L~~L 399 (521)
+... ...++.|+.|+++++.-....+..+.. .+.+...+...+..+++|++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 2000 000123444444333211111111111 122333444445778899999
Q ss_pred EEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCc
Q 041519 400 AVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLS 479 (521)
Q Consensus 400 ~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~ 479 (521)
+++++.- ..++.. ....+++|++|++.++ ++..+... ....+++|++|++++| +++.+|..
T Consensus 329 ~Ls~N~l-~~~~~~---------------~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 329 NLSQNFL-GSIDSR---------------MFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp ECCSSCC-CEECGG---------------GGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ECCCCcc-CCcChh---------------HhcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHh
Confidence 9988743 333211 1246899999999986 45555331 3446799999999997 47888764
Q ss_pred -CcccCCCCCCCCCCceEEEee
Q 041519 480 -LPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 480 -~~~l~~~~~~~~~~L~~l~~~ 500 (521)
+.. +++|+.|++.
T Consensus 390 ~~~~--------l~~L~~L~l~ 403 (455)
T 3v47_A 390 IFDR--------LTSLQKIWLH 403 (455)
T ss_dssp TTTT--------CTTCCEEECC
T ss_pred Hhcc--------CCcccEEEcc
Confidence 233 4559999997
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.1e-20 Score=196.23 Aligned_cols=297 Identities=17% Similarity=0.149 Sum_probs=212.5
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|.. ..+++++|++++|.+..++...+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~ip~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCC--CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc
Confidence 345566677788864 34689999999999999987777799999999999998 777765556999999999999999
Q ss_pred CCccCcc-ccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hH
Q 041519 213 IEVLPNS-VSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AE 282 (521)
Q Consensus 213 l~~lp~~-i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~ 282 (521)
++.+|.. ++++.+|++|++++|. +..+ | .+..+.+|++|++++|.+..+ |..++.+++|++|++... +.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred CCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 9988764 6899999999999987 5555 5 799999999999999988866 456888999999988754 34
Q ss_pred HHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc------cCcc
Q 041519 283 EAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI------VLPE 356 (521)
Q Consensus 283 ~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~------~~p~ 356 (521)
.++.++ +|+.|++..+....... .....+.+|+. |.++++.... ....
T Consensus 171 ~l~~l~-~L~~L~l~~n~i~~~~~--~~~~~l~~L~~-----------------------L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 171 ALSHLH-GLIVLRLRHLNINAIRD--YSFKRLYRLKV-----------------------LEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp HHTTCT-TCCEEEEESCCCCEECT--TCSCSCTTCCE-----------------------EEEECCTTCCEECTTTTTTC
T ss_pred HhcccC-CCcEEeCCCCcCcEeCh--hhcccCcccce-----------------------eeCCCCccccccCcccccCc
Confidence 578888 88888887665543221 11222334443 3333321111 1123
Q ss_pred ccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCcc
Q 041519 357 DVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRL 436 (521)
Q Consensus 357 ~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L 436 (521)
+|+.|+++++ .++.+|...+..+++|++|+|+++. +..++... ...+++|
T Consensus 225 ~L~~L~l~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---------------~~~l~~L 274 (477)
T 2id5_A 225 NLTSLSITHC--------------NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM---------------LHELLRL 274 (477)
T ss_dssp CCSEEEEESS--------------CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS---------------CTTCTTC
T ss_pred cccEEECcCC--------------cccccCHHHhcCccccCeeECCCCc-CCccChhh---------------ccccccC
Confidence 6888888775 2244555556788899999998874 34443221 1457889
Q ss_pred ceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCc-CcccCCCCCCCCCCceEEEee
Q 041519 437 KKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLS-LPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 437 ~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~-~~~l~~~~~~~~~~L~~l~~~ 500 (521)
+.|++.++ ++..+... ....+++|+.|++++| +++.+|.. +.. +++|+.|++.
T Consensus 275 ~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~--------l~~L~~L~l~ 328 (477)
T 2id5_A 275 QEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESVFHS--------VGNLETLILD 328 (477)
T ss_dssp CEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGGBSC--------GGGCCEEECC
T ss_pred CEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHhHcCC--------CcccCEEEcc
Confidence 99999885 45555331 3345688999999988 57777763 333 3448888886
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=197.61 Aligned_cols=123 Identities=19% Similarity=0.307 Sum_probs=100.7
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+..++..+..+|.... +++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus 4 ~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc
Confidence 34556667777886544 789999999999998886656689999999999998 777765556899999999999999
Q ss_pred CCccCccccCCcccceeecccCCCCCc--cC-CccCCCCCCEEEeeCCcCcc
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCGILKR--VP-SLAKLLALQYLDLEGTWIEE 261 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~~l~~--lp-~~~~l~~L~~L~l~~~~l~~ 261 (521)
++.+|.. .+.+|++|++++|. +.. +| .++++.+|++|++++|.+..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred eeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch
Confidence 9988876 88999999999986 554 56 78999999999999887653
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2e-20 Score=186.06 Aligned_cols=289 Identities=18% Similarity=0.207 Sum_probs=156.4
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 231 (521)
+++++|++.++.+..++. + ..+++|++|++++|. +..++. +..+++|++|++++|.+..+| .++.+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~-~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-I-EYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccchh-h-hhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 455555555555555543 2 245555555555554 444444 355555555555555555443 3555555555555
Q ss_pred ccCCCCCccCCccCCCCCCEEEeeCC-cCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccchhh
Q 041519 232 RWCGILKRVPSLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNI 306 (521)
Q Consensus 232 ~~~~~l~~lp~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~ 306 (521)
++|. +..+|.+..+.+|++|++++| .+..+ ..++.+++|++|++..+ ...++.++ +|+.|++..+.......
T Consensus 118 ~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 118 NEDN-ISDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIANLT-DLYSLSLNYNQIEDISP 194 (347)
T ss_dssp TTSC-CCCCGGGTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCT-TCSEEECTTSCCCCCGG
T ss_pred cCCc-ccCchhhccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchhhccCC-CCCEEEccCCccccccc
Confidence 5543 444444555555555555555 22222 22555555555555433 11244555 55555554443332221
Q ss_pred hhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEEecccCcccccccccCCCcc
Q 041519 307 YVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEMFGVDDVASLNDVLPREQGL 382 (521)
Q Consensus 307 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l 382 (521)
...+.+|+.+.+........ .......+|+.|.++++... ....+.|+.|+++++.-
T Consensus 195 ----~~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-------------- 255 (347)
T 4fmz_A 195 ----LASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI-------------- 255 (347)
T ss_dssp ----GGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--------------
T ss_pred ----ccCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCcc--------------
Confidence 22234444443332211111 11333446667777666321 22346788888877521
Q ss_pred cccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCc
Q 041519 383 NLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSL 462 (521)
Q Consensus 383 ~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L 462 (521)
..++ .+..+++|++|++++| .+..++. ...+++|+.|++.++. +...... ....+++|
T Consensus 256 ~~~~--~~~~l~~L~~L~l~~n-~l~~~~~-----------------~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L 313 (347)
T 4fmz_A 256 SDIN--AVKDLTKLKMLNVGSN-QISDISV-----------------LNNLSQLNSLFLNNNQ-LGNEDME-VIGGLTNL 313 (347)
T ss_dssp CCCG--GGTTCTTCCEEECCSS-CCCCCGG-----------------GGGCTTCSEEECCSSC-CCGGGHH-HHHTCTTC
T ss_pred CCCh--hHhcCCCcCEEEccCC-ccCCChh-----------------hcCCCCCCEEECcCCc-CCCcChh-HhhccccC
Confidence 1221 2467889999999988 3444421 1468999999999975 4433221 23457999
Q ss_pred cEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 463 QEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 463 ~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
++|++++|+ ++.+|. +.. +++|++|++.
T Consensus 314 ~~L~L~~n~-l~~~~~-~~~--------l~~L~~L~l~ 341 (347)
T 4fmz_A 314 TTLFLSQNH-ITDIRP-LAS--------LSKMDSADFA 341 (347)
T ss_dssp SEEECCSSS-CCCCGG-GGG--------CTTCSEESSS
T ss_pred CEEEccCCc-cccccC-hhh--------hhccceeehh
Confidence 999999997 666654 433 4559988876
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.8e-21 Score=213.54 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=46.8
Q ss_pred CCCCCcEEEccCCCCC-ccCccccCCcccceeecccCCCCC--ccC-CccCCC-------CCCEEEeeCCcCcccCc--c
Q 041519 199 HMHGLKVLNLCHTSIE-VLPNSVSDLTNLRSLLLRWCGILK--RVP-SLAKLL-------ALQYLDLEGTWIEEVPE--G 265 (521)
Q Consensus 199 ~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~--~lp-~~~~l~-------~L~~L~l~~~~l~~lp~--~ 265 (521)
++++|++|++++|.+. .+|..++++++|++|++++|..+. .+| .++++. +|++|++++|.+..+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 4555555555555433 445445555555555555543232 244 333332 55555555554445554 4
Q ss_pred ccCCCCCcccccccc-----hHHHHhhHhcccceEEEeccc
Q 041519 266 MEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 266 i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~~ 301 (521)
++++++|++|++... + .++.++ +|+.|++..+.+
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~-~L~~L~Ls~N~l 607 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNV-KLTDLKLDYNQI 607 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTS-EESEEECCSSCC
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCC-cceEEECcCCcc
Confidence 555555555544322 2 344444 455554444333
No 13
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=4.5e-21 Score=197.56 Aligned_cols=295 Identities=15% Similarity=0.165 Sum_probs=181.1
Q ss_pred cccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccce
Q 041519 149 EWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRS 228 (521)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 228 (521)
..++++++|++++|.+..+| .+ ..+++|++|++++|. +..+| ++.+++|++|++++|.++.+| ++.+++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l-~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GI-EKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TG-GGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred hHcCCCCEEEccCCCcccCh-hh-cccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 44568888888888888876 34 378888888888887 66665 478888888888888888765 788888888
Q ss_pred eecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccch
Q 041519 229 LLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDF 304 (521)
Q Consensus 229 L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~ 304 (521)
|++++|. +..+| ++.+.+|++|++++|.++.++ ++.+++|++|++... ...++.++ +|+.|++..+.+..+
T Consensus 111 L~L~~N~-l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~-~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 111 LNCDTNK-LTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCSFNKITEL 185 (457)
T ss_dssp EECCSSC-CSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCT-TCCEEECCSSCCCCC
T ss_pred EECCCCc-CCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCC-cCCEEECCCCcccee
Confidence 8888875 66676 778888888888888887764 777888888877654 11356677 888887766655443
Q ss_pred hhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc---ccCccccceEEEecccCcccccccccCCCc
Q 041519 305 NIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET---IVLPEDVQYLEMFGVDDVASLNDVLPREQG 381 (521)
Q Consensus 305 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~---~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~ 381 (521)
. ...+.+|+.+.+....... .......+|+.|.++++... ....+.|+.|+++++.
T Consensus 186 ~-----l~~l~~L~~L~l~~N~l~~--~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~-------------- 244 (457)
T 3bz5_A 186 D-----VSQNKLLNRLNCDTNNITK--LDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP-------------- 244 (457)
T ss_dssp C-----CTTCTTCCEEECCSSCCSC--CCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC--------------
T ss_pred c-----cccCCCCCEEECcCCcCCe--eccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc--------------
Confidence 2 3345556555544222211 12334456666766666322 1123456666665532
Q ss_pred ccccccchhhccC-------CCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCC
Q 041519 382 LNLFSLRLLPALQ-------NLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDN 454 (521)
Q Consensus 382 l~~~p~~~l~~L~-------~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~ 454 (521)
+...|.+.+++|. +|+.|++++|.....++ ...+++|+.|++.+++.+..++.
T Consensus 245 l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~------------------~~~l~~L~~L~Ls~n~~l~~l~~-- 304 (457)
T 3bz5_A 245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ------------------AEGCRKIKELDVTHNTQLYLLDC-- 304 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE------------------CTTCTTCCCCCCTTCTTCCEEEC--
T ss_pred CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc------------------ccccccCCEEECCCCcccceecc--
Confidence 1222221111111 33344444443333222 13467788888888777766664
Q ss_pred CcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 455 GVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 455 ~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
.+++|+.|++++|++|+.+...-..++......+++|+.|++.
T Consensus 305 ---~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 305 ---QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCV 347 (457)
T ss_dssp ---TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECC
T ss_pred ---CCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECC
Confidence 2355566666666666555443333333223346667777776
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=1.3e-21 Score=210.36 Aligned_cols=216 Identities=10% Similarity=0.060 Sum_probs=132.4
Q ss_pred CCCCcCCCCCCccEEEcccCcCCCC------------------CchhHhh--CCCCCcEEEccCCCCC-ccCccccCCcc
Q 041519 167 IPSNMSPHCEILSTLLLQHNKYLQR------------------IPECFFV--HMHGLKVLNLCHTSIE-VLPNSVSDLTN 225 (521)
Q Consensus 167 l~~~~~~~l~~L~~L~l~~~~~~~~------------------~~~~~~~--~l~~L~~L~L~~~~l~-~lp~~i~~L~~ 225 (521)
+|..+. ++++|++|++++|. +.. +|..+ + ++++|++|++++|.+. .+|..++++++
T Consensus 198 ip~~l~-~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAVM-RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp ECGGGG-GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CCHHHh-cccCCCEEECcCCc-cccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 454443 67788888888877 555 77765 5 7888888888887755 67777888888
Q ss_pred cceeecccCCCCC--ccC-CccCC------CCCCEEEeeCCcCcccCc--cccCCCCCcccccccc------hHHHHhhH
Q 041519 226 LRSLLLRWCGILK--RVP-SLAKL------LALQYLDLEGTWIEEVPE--GMEMLENLSHLSLFMA------AEEAARLS 288 (521)
Q Consensus 226 L~~L~l~~~~~l~--~lp-~~~~l------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~------~~~i~~L~ 288 (521)
|++|++++|..+. .+| .++++ .+|++|++++|.++.+|. .++++++|++|++... + .++.++
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 8888888875344 477 66665 788888888887777877 7778888888777543 4 566777
Q ss_pred hcccceEEEeccccchhhhhhccCCCCC-CcceeeeecCCCCCCccc--cceeeeeeeeeecCcccccCc----------
Q 041519 289 DRLDTFVGYFSTLNDFNIYVKSTDGRGS-KNYCLLLSASGKRGFLEV--DKSVRLFACKICETEETIVLP---------- 355 (521)
Q Consensus 289 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~~~--~~~~~L~~L~i~~~~~~~~~p---------- 355 (521)
+|+.|++..+.+..+...+ ..+.+ |+.+.+............ ....+|+.+.++++......|
T Consensus 354 -~L~~L~L~~N~l~~lp~~l---~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 354 -KLASLNLAYNQITEIPANF---CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp -EESEEECCSSEEEECCTTS---EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred -CCCEEECCCCccccccHhh---hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 7777777665554333222 23444 555555433222111111 112367777777764432222
Q ss_pred ---cccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEecc
Q 041519 356 ---EDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYC 404 (521)
Q Consensus 356 ---~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c 404 (521)
..|+.|+++++ .+..+|...+..+++|++|+++++
T Consensus 430 ~~~~~L~~L~Ls~N--------------~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 430 FKGINVSSINLSNN--------------QISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CCCCCEEEEECCSS--------------CCCSCCTHHHHTTCCCSEEECCSS
T ss_pred ccCCCCCEEECcCC--------------ccCcCCHHHHccCCCCCEEECCCC
Confidence 25666666554 223344444444555555555554
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=5.5e-20 Score=196.95 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=129.2
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.....+..+..+|... .+.+++|++++|.++.+++..+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus 16 ~~~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSSCCTTS--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcccCcCCC--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCc
Confidence 3455666777788643 4589999999999999977777799999999999998 766765556999999999999999
Q ss_pred CCcc-CccccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCccc--CccccCCCCCcccccccc------h
Q 041519 213 IEVL-PNSVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEV--PEGMEMLENLSHLSLFMA------A 281 (521)
Q Consensus 213 l~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~~~~~------~ 281 (521)
+..+ |..++.+.+|++|++++|. +..+ | .++++.+|++|++++|.+..+ |. +..+++|++|++... +
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECH
T ss_pred ccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccCh
Confidence 9855 7789999999999999986 7776 5 799999999999999988876 44 445999999988754 5
Q ss_pred HHHHhhHhcccce
Q 041519 282 EEAARLSDRLDTF 294 (521)
Q Consensus 282 ~~i~~L~~~L~~L 294 (521)
..++.++ +|+.+
T Consensus 171 ~~~~~l~-~L~~l 182 (606)
T 3t6q_A 171 EDMSSLQ-QATNL 182 (606)
T ss_dssp HHHHTTT-TCCSE
T ss_pred hhhhhhc-cccee
Confidence 6788999 99843
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=1.6e-20 Score=186.76 Aligned_cols=290 Identities=21% Similarity=0.222 Sum_probs=218.8
Q ss_pred cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
..+...+..+..++. ...++++++|++.+|.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|
T Consensus 47 ~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 47 TKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLNED 120 (347)
T ss_dssp SEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEECTTS
T ss_pred cEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCc-ccCchH--HcCCCcCCEEECcCC
Confidence 345556666666764 5678899999999999999887 4589999999999997 777764 689999999999999
Q ss_pred CCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhh
Q 041519 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARL 287 (521)
Q Consensus 212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L 287 (521)
.+..+|. +..+++|++|++++|.....++.+..+.+|++|++++|.+..++. ++.+++|++|++..+ ...+..+
T Consensus 121 ~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l 198 (347)
T 4fmz_A 121 NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASL 198 (347)
T ss_dssp CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGC
T ss_pred cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCC
Confidence 9998877 899999999999999877777789999999999999999888776 889999999988765 2237788
Q ss_pred HhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEE
Q 041519 288 SDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEM 363 (521)
Q Consensus 288 ~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l 363 (521)
+ +|+.|++..+....... ...+.+|+.+.+......... ......+|+.|.++++... ...+++|+.|++
T Consensus 199 ~-~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 199 T-SLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV 272 (347)
T ss_dssp T-TCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred C-ccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCc-chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEc
Confidence 8 99999887766554332 334667777666433222111 1455668999998887332 233568888888
Q ss_pred ecccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCC
Q 041519 364 FGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLED 443 (521)
Q Consensus 364 ~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~ 443 (521)
+++.- ..++ .+..+++|++|++++|......+.. ...+++|++|++.+
T Consensus 273 ~~n~l--------------~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----------------l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 273 GSNQI--------------SDIS--VLNNLSQLNSLFLNNNQLGNEDMEV----------------IGGLTNLTTLFLSQ 320 (347)
T ss_dssp CSSCC--------------CCCG--GGGGCTTCSEEECCSSCCCGGGHHH----------------HHTCTTCSEEECCS
T ss_pred cCCcc--------------CCCh--hhcCCCCCCEEECcCCcCCCcChhH----------------hhccccCCEEEccC
Confidence 77621 2222 3578999999999999644333221 14589999999999
Q ss_pred cccccccccCCCcccCCCccEEEEecCC
Q 041519 444 LREFKSICSDNGVLVCNSLQEIEVYNCP 471 (521)
Q Consensus 444 ~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 471 (521)
++ +..++. ...+++|++|++.+|+
T Consensus 321 n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 NH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp SS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred Cc-cccccC---hhhhhccceeehhhhc
Confidence 86 665543 3467999999999986
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.2e-20 Score=201.48 Aligned_cols=293 Identities=15% Similarity=0.163 Sum_probs=200.2
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCccccee
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSL 229 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L 229 (521)
+.+++.+++.++.+..+|..++..+++|++|++++|. +..+++..|+.+++|++|++++|.+..+|. .++.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4678888888888888888877778888888888887 777776556888888888888888886654 46788888888
Q ss_pred ecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc---hHHHHhhHhcccceEEEeccccc
Q 041519 230 LLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA---AEEAARLSDRLDTFVGYFSTLND 303 (521)
Q Consensus 230 ~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~---~~~i~~L~~~L~~L~~~~~~~~~ 303 (521)
++++|. +..+| . ++.+.+|++|++++|.+..++. .++.+++|++|++... ...++.++ +|+.|++..+....
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCT-TCSEEECCSSCCSE
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhh-hhhhhhcccCcccc
Confidence 888875 77777 4 5888888888888888876654 5888888888887754 22356677 78888776554432
Q ss_pred hhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEEecccCcccccccccCC
Q 041519 304 FNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEMFGVDDVASLNDVLPRE 379 (521)
Q Consensus 304 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l~~~~~l~~l~~~~~~~ 379 (521)
+ ....+|+.+.+..... .........+|+.|.++++... ....+.|+.|+++++.
T Consensus 207 l-------~~~~~L~~L~ls~n~l--~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~------------ 265 (597)
T 3oja_B 207 L-------AIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE------------ 265 (597)
T ss_dssp E-------ECCTTCSEEECCSSCC--CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC------------
T ss_pred c-------cCCchhheeeccCCcc--cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc------------
Confidence 1 1223444444332111 1111111236667776666321 1224567777766542
Q ss_pred CcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccC
Q 041519 380 QGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVC 459 (521)
Q Consensus 380 ~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 459 (521)
+...+...+..+++|++|+|+++ .+..++... ..+|+|+.|+++++ .+..++. ....+
T Consensus 266 --l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~----------------~~l~~L~~L~Ls~N-~l~~i~~--~~~~l 323 (597)
T 3oja_B 266 --LEKIMYHPFVKMQRLERLYISNN-RLVALNLYG----------------QPIPTLKVLDLSHN-HLLHVER--NQPQF 323 (597)
T ss_dssp --CCEEESGGGTTCSSCCEEECTTS-CCCEEECSS----------------SCCTTCCEEECCSS-CCCCCGG--GHHHH
T ss_pred --cCCCCHHHhcCccCCCEEECCCC-CCCCCCccc----------------ccCCCCcEEECCCC-CCCccCc--ccccC
Confidence 23333334577889999999887 344443222 46899999999986 4667765 45567
Q ss_pred CCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 460 NSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 460 p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
++|+.|++++|. +..+|.. .+++|+.|++.
T Consensus 324 ~~L~~L~L~~N~-l~~~~~~----------~~~~L~~L~l~ 353 (597)
T 3oja_B 324 DRLENLYLDHNS-IVTLKLS----------THHTLKNLTLS 353 (597)
T ss_dssp TTCSEEECCSSC-CCCCCCC----------TTCCCSEEECC
T ss_pred CCCCEEECCCCC-CCCcChh----------hcCCCCEEEee
Confidence 999999999986 6666532 36679999987
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=4.6e-20 Score=197.54 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=103.8
Q ss_pred EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...++.+..++. ....++++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence 44445555555554 55677889999999999888877666788999999999888 66665444588999999999999
Q ss_pred CCCccC-ccccCCcccceeecccCCCCC--ccC-CccCCCCCCEEEeeCCcCcccC-ccccCCCC
Q 041519 212 SIEVLP-NSVSDLTNLRSLLLRWCGILK--RVP-SLAKLLALQYLDLEGTWIEEVP-EGMEMLEN 271 (521)
Q Consensus 212 ~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~ 271 (521)
.+..+| ..++++.+|++|++++|. +. .+| .++++.+|++|++++|.++.++ ..++.+.+
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred ccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 888665 678889999999999886 54 467 7888999999999888777653 33444443
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=4.7e-20 Score=195.06 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=139.3
Q ss_pred EEEecCcccccC-CCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKF-PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~-p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...++.+..+ |.....++++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCC
Confidence 344455555554 4556778999999999999999987777799999999999998 88888876799999999999999
Q ss_pred CCCc--cCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc-cCccccCCCCCcccccccc-----h
Q 041519 212 SIEV--LPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE-VPEGMEMLENLSHLSLFMA-----A 281 (521)
Q Consensus 212 ~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~~~~~-----~ 281 (521)
.+.. .|..++++.+|++|++++|..+..+| .++++.+|++|++++|.+.. .|..++.+++|++|++... +
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence 9884 57789999999999999998788887 69999999999999998875 7888999999999987644 2
Q ss_pred HH-HHhhHhcccceEEEecccc
Q 041519 282 EE-AARLSDRLDTFVGYFSTLN 302 (521)
Q Consensus 282 ~~-i~~L~~~L~~L~~~~~~~~ 302 (521)
.. ++.++ +|+.|++..+...
T Consensus 189 ~~~~~~l~-~L~~L~L~~n~l~ 209 (549)
T 2z81_A 189 EIFADILS-SVRYLELRDTNLA 209 (549)
T ss_dssp HHHHHSTT-TBSEEEEESCBCT
T ss_pred hhhHhhcc-cccEEEccCCccc
Confidence 22 35578 8998888765543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.7e-19 Score=187.97 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=121.7
Q ss_pred cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeeccc
Q 041519 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLRW 233 (521)
Q Consensus 155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~ 233 (521)
++++++++.++.+|..++ ++|++|++++|. +..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 689999999999998875 899999999998 7888766679999999999999999966 78899999999999999
Q ss_pred CCCCCccCCccCCCCCCEEEeeCCcCcc--cCccccCCCCCcccccccc---hHHHHhhHhcc--cceEEEeccc
Q 041519 234 CGILKRVPSLAKLLALQYLDLEGTWIEE--VPEGMEMLENLSHLSLFMA---AEEAARLSDRL--DTFVGYFSTL 301 (521)
Q Consensus 234 ~~~l~~lp~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~~~~---~~~i~~L~~~L--~~L~~~~~~~ 301 (521)
|. +..+|.. .+.+|++|++++|.+.. +|..++++++|++|++... ...++.++ +| +.|++..+..
T Consensus 79 N~-l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NK-LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA-HLNISKVLLVLGET 150 (520)
T ss_dssp SC-CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGT-TSCEEEEEEEECTT
T ss_pred Cc-eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccc-cceeeEEEeecccc
Confidence 86 8899933 89999999999998885 6789999999999998765 45577788 88 8888776544
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=6.3e-20 Score=194.89 Aligned_cols=138 Identities=20% Similarity=0.236 Sum_probs=111.8
Q ss_pred EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...++.+..++. ....++++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccc
Confidence 34445555555543 45667899999999999999988777789999999999998 77787666799999999999999
Q ss_pred CCCccCc-cccCCcccceeecccCCCCCc--cC-CccCCCCCCEEEeeCCcCcccC-ccccCCCCC
Q 041519 212 SIEVLPN-SVSDLTNLRSLLLRWCGILKR--VP-SLAKLLALQYLDLEGTWIEEVP-EGMEMLENL 272 (521)
Q Consensus 212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L 272 (521)
.+..+|. .++++.+|++|++++|. +.. +| .++++.+|++|++++|.+..++ ..++.+++|
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9988775 68899999999999986 554 68 7999999999999999888664 446666666
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.2e-20 Score=201.37 Aligned_cols=272 Identities=13% Similarity=0.135 Sum_probs=204.8
Q ss_pred CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCC
Q 041519 174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQ 250 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~ 250 (521)
.+++++.+++.+|. +..+|..+|+.+++|++|++++|.+..+| ..++.+.+|++|++++|. +..+| .++.+.+|+
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence 46889999999998 89999998899999999999999999765 589999999999999987 77776 579999999
Q ss_pred EEEeeCCcCcccCcc-ccCCCCCcccccccc------hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeee
Q 041519 251 YLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLL 323 (521)
Q Consensus 251 ~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 323 (521)
+|++++|.+..+|.. ++.+++|++|++... +..++.++ +|+.|++..+.+.... ...+.+|..+.+.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~ 200 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVD-----LSLIPSLFHANVS 200 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECTTSCCSBCC-----GGGCTTCSEEECC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC-cCcEEECcCCCCCCcC-----hhhhhhhhhhhcc
Confidence 999999999999887 489999999998765 45688999 9999998776654431 2235556665543
Q ss_pred ecCCCCCCccccceeeeeeeeeecCcc---cccCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEE
Q 041519 324 SASGKRGFLEVDKSVRLFACKICETEE---TIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLA 400 (521)
Q Consensus 324 ~~~~~~~~~~~~~~~~L~~L~i~~~~~---~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~ 400 (521)
..... . ......|+.|.++++.. ....+..|+.|+++++.- ... ..+..+++|++|+
T Consensus 201 ~n~l~--~--l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l--------------~~~--~~l~~l~~L~~L~ 260 (597)
T 3oja_B 201 YNLLS--T--LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--------------TDT--AWLLNYPGLVEVD 260 (597)
T ss_dssp SSCCS--E--EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC--------------CCC--GGGGGCTTCSEEE
T ss_pred cCccc--c--ccCCchhheeeccCCcccccccccCCCCCEEECCCCCC--------------CCC--hhhccCCCCCEEE
Confidence 22111 1 11223677777777633 223456788888776522 111 2357899999999
Q ss_pred EecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcC
Q 041519 401 VGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL 480 (521)
Q Consensus 401 L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~ 480 (521)
|+++......+. ....+++|+.|++.++ .+..++. ....+|+|+.|++++|. +..+|..+
T Consensus 261 Ls~N~l~~~~~~----------------~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N~-l~~i~~~~ 320 (597)
T 3oja_B 261 LSYNELEKIMYH----------------PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVERNQ 320 (597)
T ss_dssp CCSSCCCEEESG----------------GGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCGGGH
T ss_pred CCCCccCCCCHH----------------HhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCCC-CCccCccc
Confidence 998854332222 1256899999999994 6777776 44567999999999985 77898877
Q ss_pred cccCCCCCCCCCCceEEEeeh
Q 041519 481 PLLDNGQPSPPPALEVIEIKK 501 (521)
Q Consensus 481 ~~l~~~~~~~~~~L~~l~~~~ 501 (521)
..+.+ |+.|++..
T Consensus 321 ~~l~~--------L~~L~L~~ 333 (597)
T 3oja_B 321 PQFDR--------LENLYLDH 333 (597)
T ss_dssp HHHTT--------CSEEECCS
T ss_pred ccCCC--------CCEEECCC
Confidence 65555 99999983
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=3.2e-20 Score=203.94 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=31.0
Q ss_pred cCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 432 TLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 432 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
.+++|+.|+++++.--..++. ....+++|+.|++++|.--..+|..+..+++ |+.|++.
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~--------L~~L~ls 712 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSSNKLDGRIPQAMSALTM--------LTEIDLS 712 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEECCCGGGGGCCC--------CSEEECC
T ss_pred ccccCCEEeCcCCccCCCCCh--HHhCCCCCCEEECCCCcccCcCChHHhCCCC--------CCEEECc
Confidence 455555555555332224444 3334456666666665543455555544444 7777766
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=1.7e-19 Score=186.74 Aligned_cols=304 Identities=15% Similarity=0.187 Sum_probs=135.9
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR 232 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 232 (521)
+++.|++.++.+..+|. + ..+++|++|++++|. +..+++ ++.+++|++|++++|.+..++. ++++++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~l~~-~-~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG-V-EYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred cccEEecCCCCCccCcc-h-hhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 45555555555544442 1 244555555555554 444444 3455555555555555544443 4555555555555
Q ss_pred cCCCCCccCCccCCCCCCEEEeeCCcCcccCc--------------------cccCCCCCcccccccc----hHHHHhhH
Q 041519 233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPE--------------------GMEMLENLSHLSLFMA----AEEAARLS 288 (521)
Q Consensus 233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~--------------------~i~~l~~L~~L~~~~~----~~~i~~L~ 288 (521)
+|. +..+|.+.++.+|++|++++|.+..+|. .++++++|++|++... ...+..++
T Consensus 121 ~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~ 199 (466)
T 1o6v_A 121 NNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 199 (466)
T ss_dssp SSC-CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred CCC-CCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCC
Confidence 543 4444444455555555555554444432 1444444444444332 12244444
Q ss_pred hcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc----ccCccccceEEEe
Q 041519 289 DRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET----IVLPEDVQYLEMF 364 (521)
Q Consensus 289 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~p~~L~~L~l~ 364 (521)
+|+.|++..+....... ...+.+|+.+.+........ .......+|+.|.++++... ....+.|+.|+++
T Consensus 200 -~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 200 -NLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 273 (466)
T ss_dssp -TCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred -CCCEEEecCCccccccc----ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence 45555444333322211 11233444443332111110 11223345555555554221 1123455555555
Q ss_pred cccCcccccccccCC----------CcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCC
Q 041519 365 GVDDVASLNDVLPRE----------QGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLP 434 (521)
Q Consensus 365 ~~~~l~~l~~~~~~~----------~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~ 434 (521)
++.- ..++. +..+ +.+..++. +..+++|++|++++|. +..++. ...++
T Consensus 274 ~n~l-~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-----------------~~~l~ 331 (466)
T 1o6v_A 274 ANQI-SNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN-ISDISP-----------------VSSLT 331 (466)
T ss_dssp SSCC-CCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC-CSCCGG-----------------GGGCT
T ss_pred CCcc-Ccccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc-CCCchh-----------------hccCc
Confidence 4421 11110 1111 11111111 3445555555555552 222111 13467
Q ss_pred ccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEeehhhcc
Q 041519 435 RLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIKKELWE 505 (521)
Q Consensus 435 ~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~~~~~~ 505 (521)
+|+.|++.++ .+..++ ....+++|+.|++++|. +..++. +.. +++|+.|.+...-|.
T Consensus 332 ~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~-~~~--------l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 332 KLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLTP-LAN--------LTRITQLGLNDQAWT 388 (466)
T ss_dssp TCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCGG-GTT--------CTTCCEEECCCEEEE
T ss_pred cCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccch-hhc--------CCCCCEEeccCCccc
Confidence 7777777775 455442 23356777777777775 344332 322 556888888733333
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=5.7e-19 Score=182.81 Aligned_cols=304 Identities=15% Similarity=0.191 Sum_probs=204.7
Q ss_pred ecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc
Q 041519 136 TAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV 215 (521)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 215 (521)
..+..+..+|. ...++++++|++++|.+..+++ +..+++|++|++++|. +..+++ ++++++|++|++++|.+..
T Consensus 53 l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 53 ADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp CCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred cCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCC
Confidence 34445555553 4556788888888888887776 3478888888888887 666666 5788888888888888777
Q ss_pred cCccccCCcccceeecccCCCCCccC---------------------CccCCCCCCEEEeeCCcCcccCccccCCCCCcc
Q 041519 216 LPNSVSDLTNLRSLLLRWCGILKRVP---------------------SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSH 274 (521)
Q Consensus 216 lp~~i~~L~~L~~L~l~~~~~l~~lp---------------------~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 274 (521)
+|. ++.+++|++|++++|. +..+| .++++.+|++|++++|.+..++. +..+++|++
T Consensus 127 ~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 203 (466)
T 1o6v_A 127 IDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLES 203 (466)
T ss_dssp CGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred ChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCE
Confidence 765 7778888888887764 44433 35677889999999998888764 888999999
Q ss_pred cccccc----hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcc
Q 041519 275 LSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEE 350 (521)
Q Consensus 275 L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~ 350 (521)
|++... ...++.++ +|+.|++..+..... .....+.+|+.+.+........ .....+.+|+.|.++++..
T Consensus 204 L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 204 LIATNNQISDITPLGILT-NLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 277 (466)
T ss_dssp EECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCC
T ss_pred EEecCCcccccccccccC-CCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccc-hhhhcCCCCCEEECCCCcc
Confidence 988765 22377889 999999877766543 2234466777776653322211 1244456788888877733
Q ss_pred c----ccCccccceEEEecccCcccccc---------cccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcch
Q 041519 351 T----IVLPEDVQYLEMFGVDDVASLND---------VLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEE 417 (521)
Q Consensus 351 ~----~~~p~~L~~L~l~~~~~l~~l~~---------~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~ 417 (521)
. ....+.|+.|+++++. +..++. +--..+.+...+. +..+++|++|++++|. +..++.
T Consensus 278 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~----- 348 (466)
T 1o6v_A 278 SNISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK-VSDVSS----- 348 (466)
T ss_dssp CCCGGGTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC-CCCCGG-----
T ss_pred CccccccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc-cCCchh-----
Confidence 2 2234678888887763 222211 1111122232222 4789999999999884 444321
Q ss_pred hhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcC
Q 041519 418 TEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL 480 (521)
Q Consensus 418 ~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~ 480 (521)
...+++|+.|++.++. +..+.. ...+++|+.|++.+|+ +..+|...
T Consensus 349 ------------l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-~~~~p~~~ 394 (466)
T 1o6v_A 349 ------------LANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA-WTNAPVNY 394 (466)
T ss_dssp ------------GTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE-EECCCBCC
T ss_pred ------------hccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc-ccCCchhh
Confidence 1468999999999975 555443 3467999999999986 56666543
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=1.8e-19 Score=198.03 Aligned_cols=318 Identities=18% Similarity=0.099 Sum_probs=174.1
Q ss_pred cccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccc
Q 041519 149 EWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLR 227 (521)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~ 227 (521)
..++++++|++++|.+....+. +..+++|++|++++|.....+|.. ++.+++|++|++++|.+. .+|.. .+.+|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 3456677777777776654444 346777777777777632334443 367777777777777766 33432 667777
Q ss_pred eeecccCCCCCccC-CccCC-CCCCEEEeeCCcCc-ccCccccCCCCCcccccccc------hHH-HHhhHhcccceEEE
Q 041519 228 SLLLRWCGILKRVP-SLAKL-LALQYLDLEGTWIE-EVPEGMEMLENLSHLSLFMA------AEE-AARLSDRLDTFVGY 297 (521)
Q Consensus 228 ~L~l~~~~~l~~lp-~~~~l-~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~------~~~-i~~L~~~L~~L~~~ 297 (521)
+|++++|.....+| .++.+ .+|++|++++|.+. .+|..++++++|++|++..+ +.. ++.++ +|++|++.
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~-~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT-TCCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC-CCCEEeCc
Confidence 77777765333666 55554 77777777777665 56777777777777777543 333 77777 77777775
Q ss_pred ecccc-chhhhhhccCCCCCCcceeeeecCCC---CCCccccceeeeeeeeeecCcccccC------ccccceEEEeccc
Q 041519 298 FSTLN-DFNIYVKSTDGRGSKNYCLLLSASGK---RGFLEVDKSVRLFACKICETEETIVL------PEDVQYLEMFGVD 367 (521)
Q Consensus 298 ~~~~~-~~~~~~~~~~~l~~L~~l~~~~~~~~---~~~~~~~~~~~L~~L~i~~~~~~~~~------p~~L~~L~l~~~~ 367 (521)
.+... .....+.... .+|+.+.+...... ..........+|+.|.+.++...... .+.|+.|+++++.
T Consensus 352 ~n~l~~~~p~~l~~l~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 352 FNEFSGELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp SSEEEECCCTTHHHHT--TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCccCccccHHHHhhh--cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 55443 1222222111 13444333211100 00000011234555655555322111 2345666665543
Q ss_pred CcccccccccCCC----------ccc-ccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCcc
Q 041519 368 DVASLNDVLPREQ----------GLN-LFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRL 436 (521)
Q Consensus 368 ~l~~l~~~~~~~~----------~l~-~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L 436 (521)
-...++..+..+. .+. .+|.. +..+++|++|++++|.....++.. ...+++|
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~----------------l~~l~~L 492 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSG----------------LSNCTNL 492 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGG----------------GGGCTTC
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHH----------------HhcCCCC
Confidence 2111121111111 111 12222 245666666666666433333221 2457788
Q ss_pred ceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 437 KKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 437 ~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
++|++.++.-...++. ....+++|+.|++++|.-...+|..+..+++ |+.|++.
T Consensus 493 ~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~--------L~~L~Ls 546 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRS--------LIWLDLN 546 (768)
T ss_dssp CEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTT--------CCEEECC
T ss_pred CEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCC--------CCEEECC
Confidence 8888887654435554 4445688888888888765577777665554 8888876
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=5.9e-20 Score=185.72 Aligned_cols=276 Identities=13% Similarity=0.142 Sum_probs=204.9
Q ss_pred CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCC
Q 041519 174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQ 250 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~ 250 (521)
.++++++|++.++. +..+|..+|..+++|++|++++|.+..++ ..++.+.+|++|++++|. +..+| .++++.+|+
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 56899999999998 99999998899999999999999999776 488999999999999986 77775 589999999
Q ss_pred EEEeeCCcCcccCccc-cCCCCCcccccccc------hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeee
Q 041519 251 YLDLEGTWIEEVPEGM-EMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLL 323 (521)
Q Consensus 251 ~L~l~~~~l~~lp~~i-~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 323 (521)
+|++++|.++.+|.++ +++++|++|++... +..++.++ +|++|++..+...... ...+.+|+.+.+.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVD-----LSLIPSLFHANVS 194 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-TCCEEECCSSCCSBCC-----GGGCTTCSEEECC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC-CCCEEECCCCcCCccc-----cccccccceeecc
Confidence 9999999999999874 88999999998754 44578889 9999988776654431 2335556655543
Q ss_pred ecCCCCCCccccceeeeeeeeeecCcc---cccCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEE
Q 041519 324 SASGKRGFLEVDKSVRLFACKICETEE---TIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLA 400 (521)
Q Consensus 324 ~~~~~~~~~~~~~~~~L~~L~i~~~~~---~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~ 400 (521)
..... . ......|+.+.++++.. ....++.|+.|++.++.- ... ..+..+++|++|+
T Consensus 195 ~n~l~--~--~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l--------------~~~--~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 195 YNLLS--T--LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--------------TDT--AWLLNYPGLVEVD 254 (390)
T ss_dssp SSCCS--E--EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC--------------CCC--GGGGGCTTCSEEE
T ss_pred ccccc--c--cCCCCcceEEECCCCeeeeccccccccccEEECCCCCC--------------ccc--HHHcCCCCccEEE
Confidence 22111 1 11223677777776632 223356788887776521 222 2357899999999
Q ss_pred EecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcC
Q 041519 401 VGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL 480 (521)
Q Consensus 401 L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~ 480 (521)
++++.. ..++.. ....+++|+.|++.++ +++.++. ....+|+|++|++++| +++.+|..+
T Consensus 255 Ls~n~l-~~~~~~---------------~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~~ 314 (390)
T 3o6n_A 255 LSYNEL-EKIMYH---------------PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVERNQ 314 (390)
T ss_dssp CCSSCC-CEEESG---------------GGTTCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGGGH
T ss_pred CCCCcC-CCcChh---------------HccccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecCccc
Confidence 998843 333211 1246899999999995 6777766 4456799999999999 588898876
Q ss_pred cccCCCCCCCCCCceEEEeehhhcc
Q 041519 481 PLLDNGQPSPPPALEVIEIKKELWE 505 (521)
Q Consensus 481 ~~l~~~~~~~~~~L~~l~~~~~~~~ 505 (521)
..+++ |+.|++...-..
T Consensus 315 ~~l~~--------L~~L~L~~N~i~ 331 (390)
T 3o6n_A 315 PQFDR--------LENLYLDHNSIV 331 (390)
T ss_dssp HHHTT--------CSEEECCSSCCC
T ss_pred cccCc--------CCEEECCCCccc
Confidence 55555 999999843333
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=3.2e-19 Score=189.19 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=104.3
Q ss_pred cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
..+...+..+..+|... .+++++|++++|.+..+++..+..+++|++|++++|. +..+++..|+++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC
Confidence 35566777788888754 3789999999999999987767799999999999998 77776666699999999999999
Q ss_pred CCCccCccccCCcccceeecccCCCCCcc--C-CccCCCCCCEEEeeCCcCcc
Q 041519 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRV--P-SLAKLLALQYLDLEGTWIEE 261 (521)
Q Consensus 212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~l--p-~~~~l~~L~~L~l~~~~l~~ 261 (521)
.++.+|.. .+.+|++|++++|. +..+ | .++++.+|++|++++|.+..
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc
Confidence 99999986 89999999999986 6664 4 68999999999999987764
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=9.8e-19 Score=194.08 Aligned_cols=167 Identities=24% Similarity=0.259 Sum_probs=139.6
Q ss_pred cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
......+..+..+|. ..+++++|++++|.++.+++..+..+++|++|++++|.....+++..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 345667778888887 56899999999999999877777799999999999997677886666799999999999999
Q ss_pred CCCcc-CccccCCcccceeecccCCCCCccC-C--ccCCCCCCEEEeeCCcCcccC--ccccCCCCCcccccccc-----
Q 041519 212 SIEVL-PNSVSDLTNLRSLLLRWCGILKRVP-S--LAKLLALQYLDLEGTWIEEVP--EGMEMLENLSHLSLFMA----- 280 (521)
Q Consensus 212 ~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~--~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~----- 280 (521)
.+..+ |..++++.+|++|++++|.....+| . ++++.+|++|++++|.+..++ ..++++++|++|++...
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 99965 8899999999999999987444455 4 999999999999999888653 56999999999998754
Q ss_pred -hHHHHhh--HhcccceEEEecccc
Q 041519 281 -AEEAARL--SDRLDTFVGYFSTLN 302 (521)
Q Consensus 281 -~~~i~~L--~~~L~~L~~~~~~~~ 302 (521)
+..++.+ + +|+.|++..+...
T Consensus 164 ~~~~l~~l~~~-~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 164 CEHELEPLQGK-TLSFFSLAANSLY 187 (844)
T ss_dssp CSGGGHHHHHC-SSCCCEECCSBSC
T ss_pred CHHHcccccCC-ccceEECCCCccc
Confidence 4566666 7 8999988766543
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=5e-19 Score=192.11 Aligned_cols=166 Identities=23% Similarity=0.269 Sum_probs=136.2
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.....+..+..+|... .+++++|++++|.+..++...+..+++|++|++++|. +..+++..|+++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSSCCSCS--CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCcccccccc--CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCc
Confidence 3455666777888643 3789999999999999998777799999999999998 777766667999999999999999
Q ss_pred CCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hH
Q 041519 213 IEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AE 282 (521)
Q Consensus 213 l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~ 282 (521)
++.+|. +++.+.+|++|++++|. +..+| .++++.+|++|++++|.+... |..++++++|++|++... +.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 998886 58999999999999986 67776 699999999999999988765 556889999999988754 33
Q ss_pred HHH--hhHhcccceEEEeccccc
Q 041519 283 EAA--RLSDRLDTFVGYFSTLND 303 (521)
Q Consensus 283 ~i~--~L~~~L~~L~~~~~~~~~ 303 (521)
.++ .++ +|+.|++..+....
T Consensus 164 ~~~~~~~~-~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 164 ELDIFANS-SLKKLELSSNQIKE 185 (680)
T ss_dssp HHGGGTTC-EESEEECTTCCCCC
T ss_pred Hhhccccc-cccEEECCCCcccc
Confidence 443 447 89999886655443
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=9.7e-19 Score=187.24 Aligned_cols=318 Identities=17% Similarity=0.103 Sum_probs=168.1
Q ss_pred ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCc--EEEccCCCCCccCccccCCc-
Q 041519 148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLK--VLNLCHTSIEVLPNSVSDLT- 224 (521)
Q Consensus 148 ~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~L~~~~l~~lp~~i~~L~- 224 (521)
...++++++|++++|.+..++...+..+++|++|++++|. +..+++..++.+++|+ .|++++|.+..++.......
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhcc
Confidence 3445566666666666665432222246666666666665 5555444456666666 66666666654433222221
Q ss_pred ---------------------------------------------------ccceeecccCCCCCccC--CccCCCCCCE
Q 041519 225 ---------------------------------------------------NLRSLLLRWCGILKRVP--SLAKLLALQY 251 (521)
Q Consensus 225 ---------------------------------------------------~L~~L~l~~~~~l~~lp--~~~~l~~L~~ 251 (521)
+|++|++++|. +..++ .++.+.+|++
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCE
Confidence 45555555553 55555 4788889999
Q ss_pred EEeeCCcCcccCccccCCCCCcccccccc------hHHHHhhHhcccceEEEeccccc-hhhhhhccCCCCCCcceeeee
Q 041519 252 LDLEGTWIEEVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTLND-FNIYVKSTDGRGSKNYCLLLS 324 (521)
Q Consensus 252 L~l~~~~l~~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~~~-~~~~~~~~~~l~~L~~l~~~~ 324 (521)
|++++|.++.+|.+++.+++|++|++... +..++.++ +|++|++..+.... ... .....+.+|+.+.+..
T Consensus 283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGT--GCLENLENLRELDLSH 359 (606)
T ss_dssp EECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCS--STTTTCTTCCEEECCS
T ss_pred EeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccch--hhhhccCcCCEEECCC
Confidence 99999988888888888889998888754 45677888 88888876554321 111 1133455666665543
Q ss_pred cCCCCC---CccccceeeeeeeeeecCcccc------cCccccceEEEecccCccccc-ccccC----------CCcccc
Q 041519 325 ASGKRG---FLEVDKSVRLFACKICETEETI------VLPEDVQYLEMFGVDDVASLN-DVLPR----------EQGLNL 384 (521)
Q Consensus 325 ~~~~~~---~~~~~~~~~L~~L~i~~~~~~~------~~p~~L~~L~l~~~~~l~~l~-~~~~~----------~~~l~~ 384 (521)
...... ........+|+.|.++++.... ...+.|+.|+++++.-....+ ..+.. .+.+..
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 222111 1123344567777776663221 123567777766543211100 00111 111222
Q ss_pred cccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccE
Q 041519 385 FSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQE 464 (521)
Q Consensus 385 ~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~ 464 (521)
.+...+..+++|++|+++++......+.. ......+++|++|++.++. +..+... ....+++|++
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~ 504 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQK-------------TNSLQTLGRLEILVLSFCD-LSSIDQH-AFTSLKMMNH 504 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECS-------------SCGGGGCTTCCEEECTTSC-CCEECTT-TTTTCTTCCE
T ss_pred cCHHHHhCCCCCCEEECCCCCCCcccccc-------------chhhccCCCccEEECCCCc-cCccChh-hhccccCCCE
Confidence 22233355666666666655332211100 0011346677777777653 4443221 2334567777
Q ss_pred EEEecCCCcccccCcCcccCC
Q 041519 465 IEVYNCPKLKRLSLSLPLLDN 485 (521)
Q Consensus 465 L~i~~C~~L~~lP~~~~~l~~ 485 (521)
|++++|.--...|..+..+++
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCS
T ss_pred EECCCCccCcCChhHhCcccc
Confidence 777776433334444444333
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=3.3e-18 Score=181.36 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=121.6
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeec
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLL 231 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l 231 (521)
..++++++++.++.+|..++ +++++|++++|. +..+++..|+++++|++|++++|.++.+ |..++.+.+|++|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP---PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC---TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCC---CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 45899999999999998765 799999999998 8888876679999999999999999976 678999999999999
Q ss_pred ccCCCCCccCCccCCCCCCEEEeeCCcCcccC--ccccCCCCCcccccccc---hHHHHhhHhcc--cceEEEeccc
Q 041519 232 RWCGILKRVPSLAKLLALQYLDLEGTWIEEVP--EGMEMLENLSHLSLFMA---AEEAARLSDRL--DTFVGYFSTL 301 (521)
Q Consensus 232 ~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~~~---~~~i~~L~~~L--~~L~~~~~~~ 301 (521)
++|. +..+|.. .+.+|++|++++|.+..+| ..++++++|++|++... ...++.++ +| +.|++..+..
T Consensus 108 s~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA-HLHLSCILLDLVSY 181 (562)
T ss_dssp TTSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGT-TSCEEEEEEEESSC
T ss_pred CCCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhh-hceeeEEEeecccc
Confidence 9986 8899933 8999999999999998765 78999999999998765 34566777 77 7887766544
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=8.8e-19 Score=188.29 Aligned_cols=141 Identities=23% Similarity=0.271 Sum_probs=118.1
Q ss_pred EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519 135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214 (521)
Q Consensus 135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 214 (521)
...+..+..+|.. ..+++++|++++|.++.+++..|..+++|++|++++|. +..++++.|+++++|++|+|++|.++
T Consensus 37 ~c~~~~l~~vP~~--lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCSSCCSS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcCccCCC--CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3455677788864 34589999999999999998877799999999999998 88888877799999999999999999
Q ss_pred ccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc--cCccccCCCCCccccccc
Q 041519 215 VLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE--VPEGMEMLENLSHLSLFM 279 (521)
Q Consensus 215 ~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~~~ 279 (521)
.+|. .|+++.+|++|++++|. +..+| .++++.+|++|++++|.++. +|..++.+++|++|++..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 8875 57899999999999985 77887 58999999999999998764 567788888888887653
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.7e-18 Score=170.91 Aligned_cols=120 Identities=25% Similarity=0.341 Sum_probs=90.7
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeec
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLL 231 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l 231 (521)
+++.+++.++.+..+|..+. +++++|++++|. +..++...|+++++|++|++++|.+..+ |..++.+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~---~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC---TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccCC---CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 57788888888888887654 578888888887 7777775568888888888888888865 777888888888888
Q ss_pred ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCccccccc
Q 041519 232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFM 279 (521)
Q Consensus 232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~ 279 (521)
++|. +..+| .+. .+|++|++++|.+..++.. ++++++|++|++..
T Consensus 108 s~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 108 SKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 8875 77787 554 6888888888877766543 56666666665543
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=181.31 Aligned_cols=164 Identities=25% Similarity=0.242 Sum_probs=137.5
Q ss_pred EEEecCcccccC-CCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKF-PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~-p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...++.+..+ +.....++++++|++++|.+..+++..+..+++|++|++++|. +..+|...|+++++|++|++++|
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTS
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCC
Confidence 444555566555 3456778899999999999999877666799999999999998 88999887899999999999999
Q ss_pred CCCcc-CccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------h
Q 041519 212 SIEVL-PNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------A 281 (521)
Q Consensus 212 ~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~ 281 (521)
.+..+ |..+..+.+|++|++++|. +..++ .+..+.+|++|++++|.++.+|.. +..+++|+.|++... +
T Consensus 115 ~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 115 KIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp CCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred ccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 99855 6778999999999999986 66664 799999999999999999988764 888999999988754 3
Q ss_pred HHHHhhHhcccceEEEec
Q 041519 282 EEAARLSDRLDTFVGYFS 299 (521)
Q Consensus 282 ~~i~~L~~~L~~L~~~~~ 299 (521)
..+..++ +|+.|++..+
T Consensus 194 ~~~~~l~-~L~~L~l~~~ 210 (477)
T 2id5_A 194 YSFKRLY-RLKVLEISHW 210 (477)
T ss_dssp TCSCSCT-TCCEEEEECC
T ss_pred hhcccCc-ccceeeCCCC
Confidence 4577888 9999988654
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1.9e-18 Score=170.60 Aligned_cols=271 Identities=17% Similarity=0.169 Sum_probs=139.8
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeec
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLL 231 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l 231 (521)
+++.+++.++.+..+|..++ +++++|++++|. +..+++..|+++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC---TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCCC---CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 35556666666555555443 455666666655 4555443345566666666666655544 445556666666666
Q ss_pred ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc--------hHHHHhhHhcccceEEEeccc
Q 041519 232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA--------AEEAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~--------~~~i~~L~~~L~~L~~~~~~~ 301 (521)
++|. +..+| .+. .+|++|++++|.++.+|.. ++.+++|++|++... +..++.+ +|+.|++..+..
T Consensus 110 ~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKL 184 (332)
T ss_dssp CSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBC
T ss_pred CCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCC
Confidence 6553 55555 333 5566666666655555443 555556665555432 1111111 344444433322
Q ss_pred cchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc------ccCccccceEEEecccCccccccc
Q 041519 302 NDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET------IVLPEDVQYLEMFGVDDVASLNDV 375 (521)
Q Consensus 302 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~------~~~p~~L~~L~l~~~~~l~~l~~~ 375 (521)
..+...+ .. +|+.|.++++... ....+.|+.|+++++
T Consensus 185 ~~l~~~~-----~~-----------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N--------- 227 (332)
T 2ft3_A 185 TGIPKDL-----PE-----------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN--------- 227 (332)
T ss_dssp SSCCSSS-----CS-----------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS---------
T ss_pred CccCccc-----cC-----------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC---------
Confidence 2211100 01 2333333333111 111345666655543
Q ss_pred ccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCC
Q 041519 376 LPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNG 455 (521)
Q Consensus 376 ~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~ 455 (521)
.+...+...+..+++|++|+++++ .+..++... ..+++|+.|++.+. .++.++...-
T Consensus 228 -----~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l----------------~~l~~L~~L~l~~N-~l~~~~~~~~ 284 (332)
T 2ft3_A 228 -----QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL----------------PDLKLLQVVYLHTN-NITKVGVNDF 284 (332)
T ss_dssp -----CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTG----------------GGCTTCCEEECCSS-CCCBCCTTSS
T ss_pred -----cCCcCChhHhhCCCCCCEEECCCC-cCeecChhh----------------hcCccCCEEECCCC-CCCccChhHc
Confidence 223344444577888888888877 344554322 45788888888874 4666554210
Q ss_pred -----cccCCCccEEEEecCCCc--ccccCcCcccCCCCCCCCCCceEEEee
Q 041519 456 -----VLVCNSLQEIEVYNCPKL--KRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 456 -----~~~~p~L~~L~i~~C~~L--~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
...+++|+.|++.++|-. ...|..+..+++ |+.+.+.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~--------L~~l~l~ 328 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD--------RLAIQFG 328 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC--------STTEEC-
T ss_pred cccccccccccccceEeecCcccccccCcccccccch--------hhhhhcc
Confidence 012577888888888743 223444545444 7777665
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=1.5e-18 Score=179.11 Aligned_cols=312 Identities=16% Similarity=0.160 Sum_probs=207.2
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-cc-CccccCCcccceeec
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VL-PNSVSDLTNLRSLLL 231 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l-p~~i~~L~~L~~L~l 231 (521)
-+.++..++.+..+|. +. ++|++|++++|. +..+++..|+++++|++|++++|.+. .+ |..++.+++|++|++
T Consensus 12 ~~~~~c~~~~l~~lp~-l~---~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-LP---AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCSSCCC-CC---TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcccCCC-CC---CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 3567778888889987 33 789999999998 77776555699999999999999886 55 567899999999999
Q ss_pred ccCCCCCcc-C-CccCCCCCCEEEeeCCcCcc-cCcc--ccCCCCCcccccccc------hHH-HHhhHhcccceEEEec
Q 041519 232 RWCGILKRV-P-SLAKLLALQYLDLEGTWIEE-VPEG--MEMLENLSHLSLFMA------AEE-AARLSDRLDTFVGYFS 299 (521)
Q Consensus 232 ~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~~~~~------~~~-i~~L~~~L~~L~~~~~ 299 (521)
++|. +..+ | .++++.+|++|++++|.+.. +|.. ++.+++|++|++... +.. ++.++ +|++|++..+
T Consensus 87 s~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n 164 (455)
T 3v47_A 87 DYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-RFHVLDLTFN 164 (455)
T ss_dssp TTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT-TCCEEECTTC
T ss_pred CCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC-cccEEeCCCC
Confidence 9987 5655 6 79999999999999998875 4444 889999999988754 333 78899 9999998766
Q ss_pred cccchhh-hhhccCCCCCCcceeeeecCCCCC---Cc------cccceeeeeeeeeecCcccccC---------ccccce
Q 041519 300 TLNDFNI-YVKSTDGRGSKNYCLLLSASGKRG---FL------EVDKSVRLFACKICETEETIVL---------PEDVQY 360 (521)
Q Consensus 300 ~~~~~~~-~~~~~~~l~~L~~l~~~~~~~~~~---~~------~~~~~~~L~~L~i~~~~~~~~~---------p~~L~~ 360 (521)
....... .+.... ..+|+.+.+........ .. ......+|+.|.++++...... ...++.
T Consensus 165 ~l~~~~~~~l~~l~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 165 KVKSICEEDLLNFQ-GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CBSCCCTTTSGGGT-TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred cccccChhhhhccc-cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 5544321 111111 12333333321111100 00 0123358999999888543222 257888
Q ss_pred EEEecccCccc----------------------ccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchh
Q 041519 361 LEMFGVDDVAS----------------------LNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEET 418 (521)
Q Consensus 361 L~l~~~~~l~~----------------------l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~ 418 (521)
|.+.++..... +..+--..+.+...+...+..+++|++|+++++.. ..++..
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~----- 317 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDN----- 317 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTT-----
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-cccChh-----
Confidence 88876632111 11111111223333334457788888888887743 333211
Q ss_pred hhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccc-cCcCcccCCCCCCCCCCceEE
Q 041519 419 EKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRL-SLSLPLLDNGQPSPPPALEVI 497 (521)
Q Consensus 419 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~l-P~~~~~l~~~~~~~~~~L~~l 497 (521)
....+++|++|++.++ .+..+... ....+++|++|++++|. ++.+ |..+..+ ++|++|
T Consensus 318 ----------~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l--------~~L~~L 376 (455)
T 3v47_A 318 ----------AFWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNH-IRALGDQSFLGL--------PNLKEL 376 (455)
T ss_dssp ----------TTTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSC-CCEECTTTTTTC--------TTCCEE
T ss_pred ----------HhcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCc-ccccChhhcccc--------ccccEE
Confidence 1246899999999986 45555331 23457999999999985 5555 5556554 459999
Q ss_pred Eee
Q 041519 498 EIK 500 (521)
Q Consensus 498 ~~~ 500 (521)
++.
T Consensus 377 ~L~ 379 (455)
T 3v47_A 377 ALD 379 (455)
T ss_dssp ECC
T ss_pred ECC
Confidence 998
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=6.2e-18 Score=166.53 Aligned_cols=144 Identities=25% Similarity=0.456 Sum_probs=123.4
Q ss_pred CCcEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEcc
Q 041519 130 SPLFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC 209 (521)
Q Consensus 130 ~~~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 209 (521)
.-..+...+..+..+|.....++++++|++++|.+..+|..+. .+++|++|++++|. +..+|..+ +.+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~-l~~lp~~l-~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ-QFAGLETLTLARNP-LRALPASI-ASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGG-GGTTCSEEEEESCC-CCCCCGGG-GGCTTCCEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHh-ccCCCCEEECCCCc-cccCcHHH-hcCcCCCEEECC
Confidence 3345666777888999988889999999999999999998775 89999999999998 77898875 899999999999
Q ss_pred CCC-CCccCccccC---------CcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCccccc
Q 041519 210 HTS-IEVLPNSVSD---------LTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSL 277 (521)
Q Consensus 210 ~~~-l~~lp~~i~~---------L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 277 (521)
+|. +..+|..++. +.+|++|++++|. +..+| .++++.+|++|++++|.+..+|..++.+++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 975 5588887765 9999999999986 88999 899999999999999999988887766665555543
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=4.6e-18 Score=184.49 Aligned_cols=161 Identities=22% Similarity=0.229 Sum_probs=122.0
Q ss_pred EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...++.+..++. ....++++++|++++|.+..+++..+..+++|++|++++|. +..+|+..|+++++|++|++++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCC
Confidence 44445556666664 35667889999999999988877766688999999999987 88888866689999999999999
Q ss_pred CCCccC-ccccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCcccCcc-c--cCCCCCcccccccc-----
Q 041519 212 SIEVLP-NSVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEVPEG-M--EMLENLSHLSLFMA----- 280 (521)
Q Consensus 212 ~l~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~~~~~----- 280 (521)
.+..+| ..++++.+|++|++++|. +... | .++++.+|++|++++|.++.++.. + ..+++|++|++...
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred ccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 888776 578899999999999986 4444 4 688899999999999988876653 2 34577888877643
Q ss_pred -hHHHHhhHhcccceEE
Q 041519 281 -AEEAARLSDRLDTFVG 296 (521)
Q Consensus 281 -~~~i~~L~~~L~~L~~ 296 (521)
+..++.+. +|+.|.+
T Consensus 187 ~~~~~~~l~-~L~~L~l 202 (680)
T 1ziw_A 187 SPGCFHAIG-RLFGLFL 202 (680)
T ss_dssp CTTGGGGSS-EECEEEC
T ss_pred Chhhhhhhh-hhhhhhc
Confidence 33455555 5555543
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=3.2e-18 Score=176.29 Aligned_cols=302 Identities=15% Similarity=0.106 Sum_probs=194.4
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+| ....++++++|++++|.+..+| +..+++|++|++++|. +..++ ++.+++|++|++++|.
T Consensus 46 ~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 46 SLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp EEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEEECCSSC
T ss_pred EEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCC-Cceee---cCCCCcCCEEECCCCc
Confidence 3444555666666 4667788999999999988885 3478899999999988 77765 5889999999999998
Q ss_pred CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCC-cCcccCccccCCCCCcccccccc---hHHHHhhH
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSLFMA---AEEAARLS 288 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~~~~---~~~i~~L~ 288 (521)
++.+| ++.+++|++|++++|. +..+| ++.+.+|++|++++| .+..+ .++.+++|++|++... .-.++.++
T Consensus 118 l~~l~--~~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~ 191 (457)
T 3bz5_A 118 LTKLD--VSQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNK 191 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCT
T ss_pred CCeec--CCCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceeccccCC
Confidence 88876 7888999999999875 66665 778888888988888 56666 3677888888877654 11266777
Q ss_pred hcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccC---ccccceEEEec
Q 041519 289 DRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVL---PEDVQYLEMFG 365 (521)
Q Consensus 289 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~---p~~L~~L~l~~ 365 (521)
+|+.|++..+.+... ....+.+|+.+.+....... .+.....+|+.+.++++...... .+.|+.|++.+
T Consensus 192 -~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~--ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 192 -LLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE--IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp -TCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC--CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred -CCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc--cCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 888888776665443 23445666666655333222 23445567888888877443222 23455555433
Q ss_pred ccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcc
Q 041519 366 VDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLR 445 (521)
Q Consensus 366 ~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 445 (521)
. .++.+. +..+..+..+| ...+++|+.|++++|..++.++..... -........++|+.|++.++
T Consensus 264 n-~L~~L~--l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~--------L~~L~l~~~~~L~~L~L~~N- 328 (457)
T 3bz5_A 264 T-DLLEID--LTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAG--------ITELDLSQNPKLVYLYLNNT- 328 (457)
T ss_dssp C-CCSCCC--CTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCC--------CSCCCCTTCTTCCEEECTTC-
T ss_pred C-CCCEEE--CCCCccCCccc---ccccccCCEEECCCCcccceeccCCCc--------ceEechhhcccCCEEECCCC-
Confidence 2 222221 22222222333 256889999999999877776532100 00111233456666666652
Q ss_pred cccccccCCCcccCCCccEEEEecCCCcccc
Q 041519 446 EFKSICSDNGVLVCNSLQEIEVYNCPKLKRL 476 (521)
Q Consensus 446 ~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~l 476 (521)
+++.++ ...+++|+.|+++++. ++.+
T Consensus 329 ~l~~l~----l~~l~~L~~L~l~~N~-l~~l 354 (457)
T 3bz5_A 329 ELTELD----VSHNTKLKSLSCVNAH-IQDF 354 (457)
T ss_dssp CCSCCC----CTTCTTCSEEECCSSC-CCBC
T ss_pred cccccc----cccCCcCcEEECCCCC-CCCc
Confidence 344442 2356888888887653 4443
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=9.9e-18 Score=166.98 Aligned_cols=137 Identities=23% Similarity=0.267 Sum_probs=76.4
Q ss_pred cCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519 137 AGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216 (521)
Q Consensus 137 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l 216 (521)
.+..+..+|... .+++++|++++|.+..++...+..+++|++|++++|. +..+++..|+++++|++|++++|.++.+
T Consensus 39 ~~~~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 39 SSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CSTTCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCCcccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 344455555432 2356666666666666655444466666666666665 5555444346666666666666666655
Q ss_pred Ccc-ccCCcccceeecccCCCCCccCC---ccCCCCCCEEEeeCC-cCcccC-ccccCCCCCccccc
Q 041519 217 PNS-VSDLTNLRSLLLRWCGILKRVPS---LAKLLALQYLDLEGT-WIEEVP-EGMEMLENLSHLSL 277 (521)
Q Consensus 217 p~~-i~~L~~L~~L~l~~~~~l~~lp~---~~~l~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~~ 277 (521)
|.. ++.+++|++|++++|. +..+|. +..+.+|++|++++| .+..++ ..++.+++|++|++
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 544 5566666666666654 555542 556666666666666 455443 33444444444444
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=3.5e-17 Score=181.63 Aligned_cols=308 Identities=16% Similarity=0.117 Sum_probs=185.0
Q ss_pred EEecCcccccC-CCcccccCCccEEEeecC-CCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 134 MVTAGLRLLKF-PGEQEWEENLERVSLMEN-DFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 134 ~~~~~~~~~~~-p~~~~~~~~l~~L~l~~~-~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
+..+++.+..+ +.....++++++|++++| .+..+++..+.++++|++|++++|. +..+++..|+++++|++|++++|
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCC
Confidence 33444555444 556677899999999999 4556766666799999999999998 77775555699999999999999
Q ss_pred CCCc-cCcc--ccCCcccceeecccCCCCCcc-C--CccCCCCCCEEEeeCCcCcc-cCccccCC--CCCcccccccc--
Q 041519 212 SIEV-LPNS--VSDLTNLRSLLLRWCGILKRV-P--SLAKLLALQYLDLEGTWIEE-VPEGMEML--ENLSHLSLFMA-- 280 (521)
Q Consensus 212 ~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p--~~~~l~~L~~L~l~~~~l~~-lp~~i~~l--~~L~~L~~~~~-- 280 (521)
.+.. +|.. ++++++|++|++++|. +..+ | .++++.+|++|++++|.+.. .|..++.+ ++|+.|++...
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence 9884 5655 8899999999999987 5554 3 58999999999999998875 46667766 78888877644
Q ss_pred ----hHHHHhhHh-----cccceEEEeccccc-hhhhhhccCCCCCCcceeeee---cC----CCC-----CCcccccee
Q 041519 281 ----AEEAARLSD-----RLDTFVGYFSTLND-FNIYVKSTDGRGSKNYCLLLS---AS----GKR-----GFLEVDKSV 338 (521)
Q Consensus 281 ----~~~i~~L~~-----~L~~L~~~~~~~~~-~~~~~~~~~~l~~L~~l~~~~---~~----~~~-----~~~~~~~~~ 338 (521)
+..++.+.. .|+.|++..+.... ....+...-....+..+.+.. +. ... ..+......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 222333330 27788776553322 111111111112222222110 00 000 000011123
Q ss_pred eeeeeeeecCcccc------cCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhc
Q 041519 339 RLFACKICETEETI------VLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVA 412 (521)
Q Consensus 339 ~L~~L~i~~~~~~~------~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~ 412 (521)
+|+.|.++++.... ...+.|+.|++.++. +...+...+..+++|++|+++++. +..+..
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--------------i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 331 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK--------------INKIADEAFYGLDNLQVLNLSYNL-LGELYS 331 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC--------------CCEECTTTTTTCSSCCEEEEESCC-CSCCCS
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCc--------------CCCCChHHhcCCCCCCEEECCCCC-CCccCH
Confidence 56666666553211 123466777766542 222333334567777777777663 222211
Q ss_pred cCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccc
Q 041519 413 VEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRL 476 (521)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~l 476 (521)
. ....+++|+.|++.++ .+..++.. ....+++|+.|++++|. ++.+
T Consensus 332 ~---------------~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i 377 (844)
T 3j0a_A 332 S---------------NFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNA-LTTI 377 (844)
T ss_dssp C---------------SCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCC-SCCC
T ss_pred H---------------HhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCC-CCcc
Confidence 1 1135667777777764 45544431 12235667777776653 4443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=5e-17 Score=160.47 Aligned_cols=257 Identities=18% Similarity=0.189 Sum_probs=180.6
Q ss_pred CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccCCCCCcc-C-CccCCCCCCEE
Q 041519 176 EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYL 252 (521)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L 252 (521)
.++++++++++. +..+|..+ .++|++|++++|.+..++ ..++++.+|++|++++|. +..+ | .++++.+|++|
T Consensus 33 c~l~~l~~~~~~-l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLG-LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSC-CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCC-ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEE
Confidence 379999999998 88999865 478999999999999774 579999999999999986 7766 5 79999999999
Q ss_pred EeeCCcCcccCccccCCCCCcccccccc------hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeeeecC
Q 041519 253 DLEGTWIEEVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSAS 326 (521)
Q Consensus 253 ~l~~~~l~~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 326 (521)
++++|.++.+|..+. ++|++|++... +..++.++ +|+.|++..+..............+
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l------------ 172 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGL------------ 172 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSC------------
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCc-cCCEEECCCCccccCCCCcccccCC------------
Confidence 999999999998775 78888877654 23466677 7777776655443211111111111
Q ss_pred CCCCCccccceeeeeeeeeecCcc---cccCccccceEEEecccCcccccccccCCCcccccccchhhccCCCcEEEEec
Q 041519 327 GKRGFLEVDKSVRLFACKICETEE---TIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGY 403 (521)
Q Consensus 327 ~~~~~~~~~~~~~L~~L~i~~~~~---~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~ 403 (521)
+|+.+.++++.. ...+++.|+.|+++++ .+...+...+..+++|++|++++
T Consensus 173 ------------~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n--------------~i~~~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 173 ------------KLNYLRISEAKLTGIPKDLPETLNELHLDHN--------------KIQAIELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp ------------CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS--------------CCCCCCTTSSTTCTTCSCCBCCS
T ss_pred ------------ccCEEECcCCCCCccCccccCCCCEEECCCC--------------cCCccCHHHhcCCCCCCEEECCC
Confidence 344444444422 1223467888877664 22334444457889999999998
Q ss_pred ccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEecCCCcccccCcC-cc
Q 041519 404 CFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLKRLSLSL-PL 482 (521)
Q Consensus 404 c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lP~~~-~~ 482 (521)
+. +..++.. ....+++|+.|++.++ ++..++. ....+++|+.|++++++ ++.+|... ..
T Consensus 227 N~-l~~~~~~---------------~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N~-l~~~~~~~~~~ 286 (332)
T 2ft3_A 227 NQ-IRMIENG---------------SLSFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTNN-ITKVGVNDFCP 286 (332)
T ss_dssp SC-CCCCCTT---------------GGGGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSSC-CCBCCTTSSSC
T ss_pred Cc-CCcCChh---------------HhhCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCCC-CCccChhHccc
Confidence 74 3433321 1246899999999986 6777776 56678999999999985 88887632 11
Q ss_pred cCCCCCCCCCCceEEEee
Q 041519 483 LDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 483 l~~~~~~~~~~L~~l~~~ 500 (521)
.. .....++|+.|.+.
T Consensus 287 ~~--~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 287 VG--FGVKRAYYNGISLF 302 (332)
T ss_dssp SS--CCSSSCCBSEEECC
T ss_pred cc--cccccccccceEee
Confidence 11 01125679999988
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=5.5e-17 Score=166.89 Aligned_cols=294 Identities=20% Similarity=0.228 Sum_probs=138.8
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|. ..+++++|++++|.++.+|.. +++|++|++++|. +..++. ..++|++|++++|.
T Consensus 75 ~L~l~~~~l~~lp~---~~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~-l~~l~~----~~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 75 ELELNNLGLSSLPE---LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNN-LKALSD----LPPLLEYLGVSNNQ 142 (454)
T ss_dssp EEECTTSCCSCCCS---CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSC-CSCCCS----CCTTCCEEECCSSC
T ss_pred EEEecCCccccCCC---CcCCCCEEEccCCcCCccccc----cCCCcEEECCCCc-cCcccC----CCCCCCEEECcCCC
Confidence 34444555555554 235667777777766666542 2556666666655 444432 11456666666666
Q ss_pred CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccch-HHHH-hhHhc
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAA-EEAA-RLSDR 290 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~-~~i~-~L~~~ 290 (521)
++.+| +++.+.+|++|++++|. +..+|.. ..+|++|++++|.++.+| .++++++|++|++.... .++. ... +
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~-~ 216 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPL-S 216 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCT-T
T ss_pred CCCCc-ccCCCCCCCEEECCCCc-CcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcC-c
Confidence 66555 35666666666666653 5555521 135666666666555555 35555666555554330 0000 112 4
Q ss_pred ccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc--cCccccceEEEecccC
Q 041519 291 LDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI--VLPEDVQYLEMFGVDD 368 (521)
Q Consensus 291 L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~--~~p~~L~~L~l~~~~~ 368 (521)
|++|++..+....+. ....+.+|+.+.+....... . +....+|+.+.++++.... ..++.|+.|+++++.
T Consensus 217 L~~L~l~~n~l~~lp----~~~~l~~L~~L~l~~N~l~~--l-~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~- 288 (454)
T 1jl5_A 217 LESIVAGNNILEELP----ELQNLPFLTTIYADNNLLKT--L-PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI- 288 (454)
T ss_dssp CCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSS--C-CSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-
T ss_pred ccEEECcCCcCCccc----ccCCCCCCCEEECCCCcCCc--c-cccccccCEEECCCCcccccCcccCcCCEEECcCCc-
Confidence 555554444332211 12233444444333211110 0 0011244444444442211 122344555444432
Q ss_pred cccccccccC-------CCcccccccchhhcc-CCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceee
Q 041519 369 VASLNDVLPR-------EQGLNLFSLRLLPAL-QNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLH 440 (521)
Q Consensus 369 l~~l~~~~~~-------~~~l~~~p~~~l~~L-~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~ 440 (521)
+..++...+. .+.+..+ +.+ ++|++|+++++. +..++ ..+++|++|+
T Consensus 289 l~~l~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~-l~~lp-------------------~~~~~L~~L~ 343 (454)
T 1jl5_A 289 FSGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNK-LIELP-------------------ALPPRLERLI 343 (454)
T ss_dssp CSEESCCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSC-CSCCC-------------------CCCTTCCEEE
T ss_pred cCcccCcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCc-ccccc-------------------ccCCcCCEEE
Confidence 1111100000 0111111 122 467777777653 33332 2357788888
Q ss_pred cCCcccccccccCCCcccCCCccEEEEecCCCcc--cccCcCccc
Q 041519 441 LEDLREFKSICSDNGVLVCNSLQEIEVYNCPKLK--RLSLSLPLL 483 (521)
Q Consensus 441 l~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~--~lP~~~~~l 483 (521)
+.++ +++.++. .+++|++|++++|+--. .+|..+..+
T Consensus 344 L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 344 ASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp CCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred CCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 8775 4665554 35778888888775333 355555444
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=6.7e-17 Score=166.56 Aligned_cols=125 Identities=26% Similarity=0.371 Sum_probs=65.9
Q ss_pred ecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc
Q 041519 136 TAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV 215 (521)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 215 (521)
..+..+..+|.. ..+++++|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|+|++|.++.
T Consensus 61 c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 61 CTRRGLSEVPQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp CCSSCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred ECCCCcCccCCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCc
Confidence 334444444432 22455556666555555554444455556666665555 444444444555566666666555555
Q ss_pred cCcc-ccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCC-cCcccCc
Q 041519 216 LPNS-VSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGT-WIEEVPE 264 (521)
Q Consensus 216 lp~~-i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~-~l~~lp~ 264 (521)
+|.. ++.+.+|++|++++|. +..+| .+.++.+|++|++++| .+..+|.
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred cChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 4432 4455556666665554 44554 3555556666665554 4444443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=8.5e-18 Score=164.48 Aligned_cols=127 Identities=19% Similarity=0.384 Sum_probs=108.2
Q ss_pred CCccEEEeecCCCCC---CCCCcCCCCCCccEEEccc-CcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCccccCCccc
Q 041519 152 ENLERVSLMENDFEE---IPSNMSPHCEILSTLLLQH-NKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNL 226 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~---l~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L 226 (521)
.++++|+++++.+.. +|..+. .+++|++|++++ |.....+|..+ +++++|++|++++|.+. .+|..++.+.+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 479999999999984 676665 899999999995 76455777765 89999999999999998 889999999999
Q ss_pred ceeecccCCCCCccC-CccCCCCCCEEEeeCCcCc-ccCccccCCC-CCcccccccc
Q 041519 227 RSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIE-EVPEGMEMLE-NLSHLSLFMA 280 (521)
Q Consensus 227 ~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~~~~~ 280 (521)
++|++++|.....+| .++.+.+|++|++++|.+. .+|..++.+. +|++|++...
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 999999987444788 8999999999999999888 8899999888 8888877643
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=9.1e-18 Score=163.75 Aligned_cols=137 Identities=21% Similarity=0.248 Sum_probs=85.5
Q ss_pred EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCC---chhHhhCCCCCcEEEccCC
Q 041519 135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRI---PECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~L~~~ 211 (521)
...+..+..+|... .+++++|++.+|.+..+|...+..+++|++|++++|. +..+ +..+ ..+++|++|++++|
T Consensus 13 ~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 13 RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-FGTTSLKYLDLSFN 88 (306)
T ss_dssp ECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-HSCSCCCEEECCSC
T ss_pred EcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCccccc-ccccccCEEECCCC
Confidence 34445556666532 3567777777777777777666677777777777776 4433 3433 46777777777777
Q ss_pred CCCccCccccCCcccceeecccCCCCCccC---CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccc
Q 041519 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLS 276 (521)
Q Consensus 212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~ 276 (521)
.+..+|..+..+++|++|++++|. +..++ .+..+.+|++|++++|.+... |..++.+++|++|+
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 777777667777777777777764 55443 366677777777777766543 33344444444443
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1e-16 Score=164.55 Aligned_cols=139 Identities=27% Similarity=0.390 Sum_probs=81.8
Q ss_pred EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519 135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214 (521)
Q Consensus 135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 214 (521)
...+..+..+|... .++++.|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|++++|.++
T Consensus 49 ~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 49 ICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp ECCSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred EeCCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCC
Confidence 33444555555432 2466666666666666665555566666666666665 55555555566666666666666666
Q ss_pred ccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCC-cCcccCcc-ccCCCCCccccc
Q 041519 215 VLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGT-WIEEVPEG-MEMLENLSHLSL 277 (521)
Q Consensus 215 ~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~-~l~~lp~~-i~~l~~L~~L~~ 277 (521)
.+|. .+..+.+|++|++++|. +..+| .+.++.+|++|++++| .+..++.. +.++++|++|++
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred eeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 5554 45666666666666654 55555 4666666666666664 55555442 444444444433
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=163.35 Aligned_cols=167 Identities=22% Similarity=0.262 Sum_probs=139.4
Q ss_pred EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...++.+..++. ....++++++|++++|.+..+++..+..+++|++|++++|. +..++...|+.+++|++|++++|
T Consensus 56 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC
T ss_pred EEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC
Confidence 44555666666665 56678899999999999999887767799999999999998 88899887799999999999999
Q ss_pred CCCccCc--cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc-----h
Q 041519 212 SIEVLPN--SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA-----A 281 (521)
Q Consensus 212 ~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~-----~ 281 (521)
.++.+|. .++.+++|++|++++|..+..++ .++.+.+|++|++++|.+..+ |..++.+++|++|++... +
T Consensus 135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 9998887 78899999999999986678775 699999999999999988865 778889999999888654 2
Q ss_pred H-HHHhhHhcccceEEEeccc
Q 041519 282 E-EAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 282 ~-~i~~L~~~L~~L~~~~~~~ 301 (521)
. .++.++ +|+.|++..+..
T Consensus 215 ~~~~~~~~-~L~~L~L~~n~l 234 (353)
T 2z80_A 215 EIFVDVTS-SVECLELRDTDL 234 (353)
T ss_dssp HHHHHHTT-TEEEEEEESCBC
T ss_pred hhhhhhcc-cccEEECCCCcc
Confidence 2 244577 888887766544
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=8.4e-17 Score=158.67 Aligned_cols=275 Identities=15% Similarity=0.143 Sum_probs=182.4
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|... .+.+++|++++|.+..++...+..+++|++|++++|. +..+++..|+.+++|++|++++|.
T Consensus 35 ~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 35 VVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp EEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCc
Confidence 3444555666777643 3689999999999999998777799999999999998 777755446999999999999999
Q ss_pred CCccCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc---cCccccCCCCCcccccccchHHHHhh
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE---VPEGMEMLENLSHLSLFMAAEEAARL 287 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~~~~~~~~i~~L 287 (521)
++.+|..+. .+|++|++++|. +..++ .+.++.+|++|++++|.+.. .+..++.+++|++|++...
T Consensus 112 l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n------- 181 (330)
T 1xku_A 112 LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT------- 181 (330)
T ss_dssp CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-------
T ss_pred CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-------
Confidence 999998765 799999999986 77776 58999999999999997763 3445555665555544332
Q ss_pred HhcccceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCccc------ccCccccceE
Q 041519 288 SDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEET------IVLPEDVQYL 361 (521)
Q Consensus 288 ~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~------~~~p~~L~~L 361 (521)
....+...+ ..+ |+.|.++++... ....+.|+.|
T Consensus 182 ------------~l~~l~~~~-----~~~-----------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 182 ------------NITTIPQGL-----PPS-----------------------LTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp ------------CCCSCCSSC-----CTT-----------------------CSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred ------------ccccCCccc-----ccc-----------------------CCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 221111000 022 222333222111 1123467777
Q ss_pred EEecccCcccccccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeec
Q 041519 362 EMFGVDDVASLNDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHL 441 (521)
Q Consensus 362 ~l~~~~~l~~l~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l 441 (521)
+++++. +...+...+..+++|++|+++++ .+..++... ..+++|++|++
T Consensus 222 ~Ls~n~--------------l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l----------------~~l~~L~~L~l 270 (330)
T 1xku_A 222 GLSFNS--------------ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGL----------------ADHKYIQVVYL 270 (330)
T ss_dssp ECCSSC--------------CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTT----------------TTCSSCCEEEC
T ss_pred ECCCCc--------------CceeChhhccCCCCCCEEECCCC-cCccCChhh----------------ccCCCcCEEEC
Confidence 766542 23333334577889999999888 444554322 46789999999
Q ss_pred CCcccccccccCCC-----cccCCCccEEEEecCCCcc--cccCcCcccCCCCCCCCCCceEEEee
Q 041519 442 EDLREFKSICSDNG-----VLVCNSLQEIEVYNCPKLK--RLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 442 ~~~~~L~~~~~~~~-----~~~~p~L~~L~i~~C~~L~--~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
.++ .++.++...- ...++.|+.|++.++|--. .-|..+..+.+ ++.+++.
T Consensus 271 ~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~--------l~~l~L~ 327 (330)
T 1xku_A 271 HNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV--------RAAVQLG 327 (330)
T ss_dssp CSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC--------GGGEEC-
T ss_pred CCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc--------eeEEEec
Confidence 885 4666654211 1124788899999887421 22334444443 7777765
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=3.2e-16 Score=166.46 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=82.4
Q ss_pred cEEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 132 LFMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 132 ~~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
..+...+..+..+|.... +++++|++++|.++.+|. .+++|++|++++|. +..+|. .+++|++|++++|
T Consensus 43 ~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N 111 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSN 111 (622)
T ss_dssp CEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSC
T ss_pred cEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCC
Confidence 345556666677776443 677888888888777766 35778888888777 666765 5677888888888
Q ss_pred CCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCcc
Q 041519 212 SIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEG 265 (521)
Q Consensus 212 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~ 265 (521)
.++.+|. .+.+|++|++++|. +..+|.. +.+|++|++++|.++.+|..
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N~l~~l~~~ 159 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQLASLPAL 159 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSCCCCC
T ss_pred cCCCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCCcCCCcCCc
Confidence 7777776 56677788887765 7777721 37778888888877777653
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=4e-16 Score=160.44 Aligned_cols=269 Identities=16% Similarity=0.119 Sum_probs=174.7
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR 232 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 232 (521)
++++|++.++.++.+|.. .++|++|++++|. +..+|. .+.+|++|++++|.+..+|.. ..+|++|+++
T Consensus 72 ~l~~L~l~~~~l~~lp~~----~~~L~~L~l~~n~-l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPEL----PPHLESLVASCNS-LTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVS 139 (454)
T ss_dssp TCSEEECTTSCCSCCCSC----CTTCSEEECCSSC-CSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred CCCEEEecCCccccCCCC----cCCCCEEEccCCc-CCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECc
Confidence 678999999999888763 3689999999988 666775 347899999999988877652 2689999999
Q ss_pred cCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccchhhhh
Q 041519 233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNIYV 308 (521)
Q Consensus 233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~~~ 308 (521)
+|. +..+|+++++.+|++|++++|.++.+|..+ .+|++|++... ...++.++ +|+.|++..+....+..
T Consensus 140 ~n~-l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~-~L~~L~l~~N~l~~l~~-- 212 (454)
T 1jl5_A 140 NNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLP-FLTAIYADNNSLKKLPD-- 212 (454)
T ss_dssp SSC-CSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCT-TCCEEECCSSCCSSCCC--
T ss_pred CCC-CCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCC-CCCEEECCCCcCCcCCC--
Confidence 986 777888999999999999999888888754 47777777644 12577888 89998887665543221
Q ss_pred hccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc--cCccccceEEEecccCcccccccccCC-------
Q 041519 309 KSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI--VLPEDVQYLEMFGVDDVASLNDVLPRE------- 379 (521)
Q Consensus 309 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~--~~p~~L~~L~l~~~~~l~~l~~~~~~~------- 379 (521)
...+|+.+.+......... ......+|+.+.++++.... ..+++|+.|+++++. +..++...+..
T Consensus 213 ----~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 213 ----LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSE 286 (454)
T ss_dssp ----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred ----CcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCc-ccccCcccCcCCEEECcC
Confidence 1235666655433222111 23455678888888774322 235788888887753 22222111110
Q ss_pred CcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccC-CccceeecCCcccccccccCCCccc
Q 041519 380 QGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTL-PRLKKLHLEDLREFKSICSDNGVLV 458 (521)
Q Consensus 380 ~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f-~~L~~L~l~~~~~L~~~~~~~~~~~ 458 (521)
+.+..+|. ..++|++|+++++. +..+ ..+ ++|+.|++.++ ++..++. .
T Consensus 287 N~l~~l~~----~~~~L~~L~l~~N~-l~~i--------------------~~~~~~L~~L~Ls~N-~l~~lp~-----~ 335 (454)
T 1jl5_A 287 NIFSGLSE----LPPNLYYLNASSNE-IRSL--------------------CDLPPSLEELNVSNN-KLIELPA-----L 335 (454)
T ss_dssp SCCSEESC----CCTTCCEEECCSSC-CSEE--------------------CCCCTTCCEEECCSS-CCSCCCC-----C
T ss_pred CccCcccC----cCCcCCEEECcCCc-CCcc--------------------cCCcCcCCEEECCCC-ccccccc-----c
Confidence 11111110 01344445444432 1111 123 58888888874 5666654 3
Q ss_pred CCCccEEEEecCCCcccccC
Q 041519 459 CNSLQEIEVYNCPKLKRLSL 478 (521)
Q Consensus 459 ~p~L~~L~i~~C~~L~~lP~ 478 (521)
+++|+.|++++| +++.+|.
T Consensus 336 ~~~L~~L~L~~N-~l~~lp~ 354 (454)
T 1jl5_A 336 PPRLERLIASFN-HLAEVPE 354 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC
T ss_pred CCcCCEEECCCC-ccccccc
Confidence 588999999887 4777776
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=5.9e-17 Score=157.96 Aligned_cols=142 Identities=21% Similarity=0.259 Sum_probs=122.1
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc---CccccCCcccceee
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL---PNSVSDLTNLRSLL 230 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~ 230 (521)
.+.++..++.++.+|..+. +++++|++++|. +..+|..+|+++++|++|++++|.+..+ |..+..+.+|++|+
T Consensus 9 ~~~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC---TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CCEEEcCCCCcccCCCCCC---CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 3578888899999998765 689999999998 8899998889999999999999998855 67778899999999
Q ss_pred cccCCCCCccC-CccCCCCCCEEEeeCCcCcccCc--cccCCCCCcccccccc------hHHHHhhHhcccceEEEeccc
Q 041519 231 LRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPE--GMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 231 l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~ 301 (521)
+++|. +..+| .+..+.+|++|++++|.+..++. .+..+++|++|++... +..++.++ +|++|++..+..
T Consensus 85 Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSF 162 (306)
T ss_dssp CCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEE
T ss_pred CCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCcc
Confidence 99986 88898 89999999999999999988774 6889999999998754 45577888 999998765543
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=6.4e-17 Score=171.79 Aligned_cols=254 Identities=17% Similarity=0.136 Sum_probs=165.6
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR 232 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 232 (521)
+++.|+++++.++.+|..++ ++|++|++++|. +..+|. .+++|++|++++|.++.+|. .+.+|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 57888888888888887765 688888888887 777776 46888888888888888876 67888888888
Q ss_pred cCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccch-HHH-HhhHhcccceEEEeccccchhhhhhc
Q 041519 233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMAA-EEA-ARLSDRLDTFVGYFSTLNDFNIYVKS 310 (521)
Q Consensus 233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~-~~i-~~L~~~L~~L~~~~~~~~~~~~~~~~ 310 (521)
+|. +..+|. .+.+|++|++++|.++.+|..+ ++|++|++..+. ..+ ..+. +|+.|.+..+.+..+.
T Consensus 110 ~N~-l~~l~~--~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~~~~-~L~~L~L~~N~l~~l~----- 177 (622)
T 3g06_A 110 SNP-LTHLPA--LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPALPS-ELCKLWAYNNQLTSLP----- 177 (622)
T ss_dssp SCC-CCCCCC--CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSCCCCCCT-TCCEEECCSSCCSCCC-----
T ss_pred CCc-CCCCCC--CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCCcCCccC-CCCEEECCCCCCCCCc-----
Confidence 875 777775 5678888888888888888753 677777776541 001 1234 6666666555444322
Q ss_pred cCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccc--cCccccceEEEecccCcccccccccCCCcccccccc
Q 041519 311 TDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETI--VLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLR 388 (521)
Q Consensus 311 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~--~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~ 388 (521)
..+.+|+.+.+....... . +....+|+.|.+.++.... ..+++|+.|+++++ .++.+|
T Consensus 178 -~~~~~L~~L~Ls~N~l~~--l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N--------------~L~~lp-- 237 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS--L-PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN--------------RLTSLP-- 237 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC--C-CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS--------------CCSCCC--
T ss_pred -ccCCCCcEEECCCCCCCC--C-CCccchhhEEECcCCcccccCCCCCCCCEEEccCC--------------ccCcCC--
Confidence 223455555443222111 1 1112356666666553221 12356777766653 222333
Q ss_pred hhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEe
Q 041519 389 LLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVY 468 (521)
Q Consensus 389 ~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~ 468 (521)
..+++|++|+++++ .+..++. .+++|+.|++.++ +++.++. ....+++|+.|++.
T Consensus 238 --~~l~~L~~L~Ls~N-~L~~lp~-------------------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 238 --VLPSELKELMVSGN-RLTSLPM-------------------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLE 292 (622)
T ss_dssp --CCCTTCCEEECCSS-CCSCCCC-------------------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECC
T ss_pred --CCCCcCcEEECCCC-CCCcCCc-------------------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEec
Confidence 34577888888877 4444432 3688888888885 5777765 45567888888888
Q ss_pred cCCCcc
Q 041519 469 NCPKLK 474 (521)
Q Consensus 469 ~C~~L~ 474 (521)
+|+--.
T Consensus 293 ~N~l~~ 298 (622)
T 3g06_A 293 GNPLSE 298 (622)
T ss_dssp SCCCCH
T ss_pred CCCCCC
Confidence 887433
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=5e-16 Score=149.00 Aligned_cols=155 Identities=22% Similarity=0.267 Sum_probs=126.2
Q ss_pred EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519 135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214 (521)
Q Consensus 135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 214 (521)
...+..+..+|... .+++++|++++|.+..++...+..+++|++|++++|. +..++...|+.+++|++|++++|.+.
T Consensus 13 ~c~~~~l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccC
Confidence 34555666777643 3589999999999999988666789999999999998 88888766799999999999999999
Q ss_pred ccC-ccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcc--cCccccCCCCCcccccccc------hHH
Q 041519 215 VLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEE--VPEGMEMLENLSHLSLFMA------AEE 283 (521)
Q Consensus 215 ~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~~~~------~~~ 283 (521)
.++ ..+..+.+|++|++++|. +..++ .++.+.+|++|++++|.++. +|..++.+++|++|++... +..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred ccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 665 678999999999999986 66666 69999999999999998886 6888888888888887654 234
Q ss_pred HHhhHhcccce
Q 041519 284 AARLSDRLDTF 294 (521)
Q Consensus 284 i~~L~~~L~~L 294 (521)
++.+. +|+.+
T Consensus 169 ~~~l~-~L~~l 178 (276)
T 2z62_A 169 LRVLH-QMPLL 178 (276)
T ss_dssp GHHHH-TCTTC
T ss_pred hhhhh-hcccc
Confidence 55555 55533
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=3.2e-16 Score=146.96 Aligned_cols=87 Identities=21% Similarity=0.316 Sum_probs=43.8
Q ss_pred CccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC-CCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEE
Q 041519 177 ILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS-IEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYL 252 (521)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L 252 (521)
+++.|++++|. +..++...|+.+++|++|++++|. ++.+|. .++.+++|++|++++|..+..+| .+..+.+|++|
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 45555555554 444444434555555555555554 544443 34455555555555422244444 34555555555
Q ss_pred EeeCCcCcccCc
Q 041519 253 DLEGTWIEEVPE 264 (521)
Q Consensus 253 ~l~~~~l~~lp~ 264 (521)
++++|.++.+|.
T Consensus 111 ~l~~n~l~~lp~ 122 (239)
T 2xwt_C 111 GIFNTGLKMFPD 122 (239)
T ss_dssp EEEEECCCSCCC
T ss_pred eCCCCCCccccc
Confidence 555555555544
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=2.2e-15 Score=161.73 Aligned_cols=141 Identities=22% Similarity=0.285 Sum_probs=121.1
Q ss_pred EEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCcccceeecccC
Q 041519 156 RVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLLRWC 234 (521)
Q Consensus 156 ~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 234 (521)
+.+-++.+++++|..+. +++++|++++|. ++.+|+..|.++++|++|+|++|.++.+|. +|+++++|++|++++|
T Consensus 35 ~~~c~~~~l~~vP~~lp---~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP---FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSSCCSSSC---TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCccCCCCC---cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 44555667889998764 589999999998 999998777999999999999999998864 6889999999999998
Q ss_pred CCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc-------hHHHHhhHhcccceEEEecccc
Q 041519 235 GILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA-------AEEAARLSDRLDTFVGYFSTLN 302 (521)
Q Consensus 235 ~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~-------~~~i~~L~~~L~~L~~~~~~~~ 302 (521)
. +..+| .+.++.+|++|++++|.++.+|.. ++++++|++|++... +..++.++ +|++|++..+.+.
T Consensus 111 ~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 111 P-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQ 186 (635)
T ss_dssp C-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCC
T ss_pred c-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-hhhhhcccCcccc
Confidence 6 88888 489999999999999999998865 899999999988643 56788899 9999988765543
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=3.9e-17 Score=159.76 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=88.4
Q ss_pred CCccEEEcccCcCCC--CCchhHhhCCCCCcEEEccC-CCCC-ccCccccCCcccceeecccCCCCCccC-CccCCCCCC
Q 041519 176 EILSTLLLQHNKYLQ--RIPECFFVHMHGLKVLNLCH-TSIE-VLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQ 250 (521)
Q Consensus 176 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~ 250 (521)
.+++.|++++|.... .+|..+ +++++|++|++++ |.+. .+|..++++++|++|++++|.....+| .++++.+|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999998444 678765 8999999999995 7776 789999999999999999987434788 899999999
Q ss_pred EEEeeCCcCc-ccCccccCCCCCcccccccc
Q 041519 251 YLDLEGTWIE-EVPEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 251 ~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~ 280 (521)
+|++++|.+. .+|..++.+++|++|++...
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 9999999888 78888888888888876543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=6e-16 Score=149.20 Aligned_cols=143 Identities=29% Similarity=0.429 Sum_probs=108.1
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|.. ..+++++|++++|.+..++...+..+++|++|++++|. +..+++..|+.+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC
Confidence 344555666777653 34688899999988888887766788889999998887 666655556888889999998886
Q ss_pred -CCcc-CccccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCccccccc
Q 041519 213 -IEVL-PNSVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFM 279 (521)
Q Consensus 213 -l~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~ 279 (521)
+..+ |..+..+.+|++|++++|. +..+ | .+..+.+|++|++++|.++.+|.. ++.+++|++|++..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC
Confidence 7766 6678888889999998876 6655 4 588888999999988888877654 56666666665543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=5.3e-16 Score=149.55 Aligned_cols=122 Identities=21% Similarity=0.284 Sum_probs=102.6
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeecc
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLR 232 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~ 232 (521)
.+.++..++.++.+|..+. ++++.|++++|. +..++...|+.+++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGIP---AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp SCEEECCSSCCSSCCTTCC---TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEEEcCcCCcccCCcCCC---CCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 3678889999999998754 789999999998 8888877679999999999999999966 7789999999999999
Q ss_pred cCCCCCcc-C-CccCCCCCCEEEeeCCcCccc-CccccCCCCCccccccc
Q 041519 233 WCGILKRV-P-SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFM 279 (521)
Q Consensus 233 ~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~ 279 (521)
+|..+..+ | .+..+.+|++|++++|.+..+ |..++.+++|++|++..
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC
Confidence 98767877 5 799999999999999988876 44466666666665443
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=6.8e-16 Score=158.99 Aligned_cols=161 Identities=23% Similarity=0.244 Sum_probs=131.9
Q ss_pred EEEecCcccccC-CCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKF-PGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~-p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...++.+..+ +.....+++++.|++++|.+..++...+..+++|++|++++|. +..++...|+.+++|++|++++|
T Consensus 79 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC
T ss_pred EEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC
Confidence 444455555554 4456778999999999999999988877799999999999998 88999887899999999999999
Q ss_pred CCCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc------hH
Q 041519 212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA------AE 282 (521)
Q Consensus 212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~------~~ 282 (521)
.+..+|. .+..+++|++|++++|..+..+| .+..+.+|++|++++|.++.+|. +..+.+|++|++... +.
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGG
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcc
Confidence 9998765 67899999999999988899998 58999999999999999998874 777777777776544 33
Q ss_pred HHHhhHhcccceEE
Q 041519 283 EAARLSDRLDTFVG 296 (521)
Q Consensus 283 ~i~~L~~~L~~L~~ 296 (521)
.+..++ +|+.|++
T Consensus 237 ~~~~l~-~L~~L~L 249 (452)
T 3zyi_A 237 SFHGLS-SLKKLWV 249 (452)
T ss_dssp GGTTCT-TCCEEEC
T ss_pred cccCcc-CCCEEEe
Confidence 444455 5555544
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=159.16 Aligned_cols=146 Identities=26% Similarity=0.297 Sum_probs=124.0
Q ss_pred EEEecCcccccCC-CcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFP-GEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p-~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...++.+..++ .....+++++.|++++|.+..++...+..+++|++|++++|. +..++...|..+++|++|++++|
T Consensus 68 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp EEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSC
T ss_pred EEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCC
Confidence 3444555555554 456678899999999999999988877799999999999998 88999877799999999999999
Q ss_pred CCCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519 212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 280 (521)
.+..+|. .+..+++|++|++++|..+..+| .+..+.+|++|++++|.++.+|. +..+.+|++|++...
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN 217 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTS
T ss_pred cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCC
Confidence 9997765 67899999999999988899888 58999999999999999999885 777777777766543
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=5.7e-15 Score=142.59 Aligned_cols=123 Identities=22% Similarity=0.223 Sum_probs=103.6
Q ss_pred ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCccccee
Q 041519 150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSL 229 (521)
Q Consensus 150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 229 (521)
..++++.+++.++.++.+|..+. +++++|++++|. +..++...|..+++|++|++++|.++.++.. +.+.+|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 45689999999999999998865 689999999998 7777766679999999999999999988764 889999999
Q ss_pred ecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccc
Q 041519 230 LLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLF 278 (521)
Q Consensus 230 ~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~ 278 (521)
++++|. +..+| .+..+.+|++|++++|.++.+|. .++.+++|++|++.
T Consensus 83 ~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 83 DLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp ECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred ECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence 999985 88999 78999999999999999998874 36666655555443
No 64
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=4.6e-15 Score=147.43 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=46.0
Q ss_pred ccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCC
Q 041519 382 LNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNS 461 (521)
Q Consensus 382 l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~ 461 (521)
++.+|...+..+++|++|+++++ .++.++. ..|..|+.|.+.++.+++.++. ...+++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~------------------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~ 247 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRT-RIHSLPS------------------YGLENLKKLRARSTYNLKKLPT---LEKLVA 247 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTS-CCCCCCS------------------SSCTTCCEEECTTCTTCCCCCC---TTTCCS
T ss_pred ccCCCHHHhccCcccchhhcCCC-CcCccCh------------------hhhccchHhhhccCCCcCcCCC---chhCcC
Confidence 34555555677888888888776 4555543 3477888888888888888775 335678
Q ss_pred ccEEEEec
Q 041519 462 LQEIEVYN 469 (521)
Q Consensus 462 L~~L~i~~ 469 (521)
|+.+++.+
T Consensus 248 L~~l~l~~ 255 (350)
T 4ay9_X 248 LMEASLTY 255 (350)
T ss_dssp CCEEECSC
T ss_pred hhhCcCCC
Confidence 88887754
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=1.1e-16 Score=156.96 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 231 (521)
+++++|++++|.+..+++..+..+++|++|++++|. +...++ +..+++|++|++++|.++.+|. ..+|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 467777777777777765555577777777777776 554444 4677777777777777665543 367777777
Q ss_pred ccCCCCCccC-CccCCCCCCEEEeeCCcCcccCc-cccCCCCCccccccc
Q 041519 232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFM 279 (521)
Q Consensus 232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~ 279 (521)
++|. +..++ . .+.+|++|++++|.++.++. .++.+++|++|++..
T Consensus 107 ~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 107 ANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp CSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred CCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 7765 56555 3 25667777777777776543 456666666665554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=4.8e-16 Score=152.34 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=90.3
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeeccc
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRW 233 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 233 (521)
++..++..+.+...+..++..+++|++|++++|. +..+++..|+.+++|++|++++|.+...+. ++.+.+|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 3444455555555555556677899999999998 777776667999999999999999987665 89999999999999
Q ss_pred CCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCccccccc
Q 041519 234 CGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFM 279 (521)
Q Consensus 234 ~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~ 279 (521)
|. +..+| ...+|++|++++|.+..++... +++|++|++..
T Consensus 90 n~-l~~l~---~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~ 129 (317)
T 3o53_A 90 NY-VQELL---VGPSIETLHAANNNISRVSCSR--GQGKKNIYLAN 129 (317)
T ss_dssp SE-EEEEE---ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCS
T ss_pred Cc-ccccc---CCCCcCEEECCCCccCCcCccc--cCCCCEEECCC
Confidence 86 77666 3389999999999988876532 45555554443
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=1e-14 Score=139.40 Aligned_cols=164 Identities=26% Similarity=0.390 Sum_probs=132.7
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|... .+++++|++++|.+..++...+..+++|++|++++|. +..++..+|..+++|++|++++|.
T Consensus 20 ~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc
Confidence 4555666777777643 3689999999999999988777789999999999998 888988888899999999999999
Q ss_pred CCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------hH
Q 041519 213 IEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------AE 282 (521)
Q Consensus 213 l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~~ 282 (521)
+..+|. .+..+.+|++|++++|. +..+| .++.+.+|++|++++|.++.+|.. ++.+++|++|++... +.
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 997775 45789999999999986 77776 488999999999999999988876 678888888887654 23
Q ss_pred HHHhhHhcccceEEEeccc
Q 041519 283 EAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 283 ~i~~L~~~L~~L~~~~~~~ 301 (521)
.+..++ +|+.|++..+.+
T Consensus 176 ~~~~l~-~L~~L~L~~N~l 193 (270)
T 2o6q_A 176 AFDKLT-ELKTLKLDNNQL 193 (270)
T ss_dssp TTTTCT-TCCEEECCSSCC
T ss_pred HhccCC-CcCEEECCCCcC
Confidence 356677 777777655544
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=1.9e-14 Score=138.01 Aligned_cols=118 Identities=24% Similarity=0.335 Sum_probs=96.2
Q ss_pred EEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCc-cccCCcccceeecccC
Q 041519 156 RVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLLRWC 234 (521)
Q Consensus 156 ~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 234 (521)
.+...+..+..+|..+. +++++|++++|. +..++...|.++++|++|++++|.+..++. .++.+.+|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l~---~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP---FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSC---TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCCC---CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 45556667778888764 589999999998 888887667999999999999999997764 7889999999999998
Q ss_pred CCCCccC--CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccc
Q 041519 235 GILKRVP--SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLF 278 (521)
Q Consensus 235 ~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~ 278 (521)
. +..++ .+.++.+|++|++++|.+..++. .++.+++|++|++.
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 87 P-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp C-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred c-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence 6 77665 69999999999999998887765 46666666666543
No 69
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=2.6e-14 Score=141.91 Aligned_cols=237 Identities=17% Similarity=0.128 Sum_probs=158.8
Q ss_pred cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCc-cccCCcccceeecc
Q 041519 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPN-SVSDLTNLRSLLLR 232 (521)
Q Consensus 155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~-~i~~L~~L~~L~l~ 232 (521)
+.++.++++++++|..+. ++++.|++++|+ ++.+|...|.++++|++|+|++|.+. .+|. .+.++.+|+.+...
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCcC---CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 567778888888888764 578889999888 88888877788999999999998864 5654 56788887765544
Q ss_pred cCCCCCccC--CccCCCCCCEEEeeCCcCcccCccc-cCCCCCcccccccchHHHHhhHhcccceEEEec-cccchhhhh
Q 041519 233 WCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGM-EMLENLSHLSLFMAAEEAARLSDRLDTFVGYFS-TLNDFNIYV 308 (521)
Q Consensus 233 ~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~~~~~~~~i~~L~~~L~~L~~~~~-~~~~~~~~~ 308 (521)
++..+..+| .+..+.+|++|++++|.++.+|... .... ++..+++... ....+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~-------------------~l~~l~l~~~~~i~~l~~-- 146 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-------------------QKVLLDIQDNINIHTIER-- 146 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS-------------------SCEEEEEESCTTCCEECT--
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccc-------------------hhhhhhhccccccccccc--
Confidence 434578775 5788999999999998888776531 1111 2222222110 0000000
Q ss_pred hccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCccccceEEEecccCcccccccccCCCcccccccc
Q 041519 309 KSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASLNDVLPREQGLNLFSLR 388 (521)
Q Consensus 309 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~p~~ 388 (521)
..+ ...+..++.|++++ ++++.+|..
T Consensus 147 ---------------------------------------~~f-~~~~~~l~~L~L~~--------------N~i~~i~~~ 172 (350)
T 4ay9_X 147 ---------------------------------------NSF-VGLSFESVILWLNK--------------NGIQEIHNS 172 (350)
T ss_dssp ---------------------------------------TSS-TTSBSSCEEEECCS--------------SCCCEECTT
T ss_pred ---------------------------------------cch-hhcchhhhhhcccc--------------ccccCCChh
Confidence 000 01122344554443 233334444
Q ss_pred hhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCcccccccccCCCcccCCCccEEEEe
Q 041519 389 LLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICSDNGVLVCNSLQEIEVY 468 (521)
Q Consensus 389 ~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~p~L~~L~i~ 468 (521)
.+ ...+|++|.+.++..++.++...+ ..+++|++|++++. +++.++. + .|.+|+.|.+.
T Consensus 173 ~f-~~~~L~~l~l~~~n~l~~i~~~~f---------------~~l~~L~~LdLs~N-~l~~lp~--~--~~~~L~~L~~l 231 (350)
T 4ay9_X 173 AF-NGTQLDELNLSDNNNLEELPNDVF---------------HGASGPVILDISRT-RIHSLPS--Y--GLENLKKLRAR 231 (350)
T ss_dssp SS-TTEEEEEEECTTCTTCCCCCTTTT---------------TTEECCSEEECTTS-CCCCCCS--S--SCTTCCEEECT
T ss_pred hc-cccchhHHhhccCCcccCCCHHHh---------------ccCcccchhhcCCC-CcCccCh--h--hhccchHhhhc
Confidence 33 345789999988888888865431 46899999999995 6888876 3 46899999999
Q ss_pred cCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 469 NCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 469 ~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
+|.+++.+|. +.. +++|+.+.+.
T Consensus 232 ~~~~l~~lP~-l~~--------l~~L~~l~l~ 254 (350)
T 4ay9_X 232 STYNLKKLPT-LEK--------LVALMEASLT 254 (350)
T ss_dssp TCTTCCCCCC-TTT--------CCSCCEEECS
T ss_pred cCCCcCcCCC-chh--------CcChhhCcCC
Confidence 9999999995 444 4559999986
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2e-14 Score=135.82 Aligned_cols=164 Identities=24% Similarity=0.325 Sum_probs=131.1
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|... .+.++.|++++|.+..++...+..+++|++|++++|. +..+++..|..+++|++|++++|.
T Consensus 18 ~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp EEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc
Confidence 3455666777777653 3689999999999999888777789999999999998 777777767899999999999999
Q ss_pred CCccC-ccccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc------hH
Q 041519 213 IEVLP-NSVSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA------AE 282 (521)
Q Consensus 213 l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~------~~ 282 (521)
++.+| ..++.+.+|++|++++|. +..+| . +..+.+|++|++++|.++.+|. .++.+++|++|++... +.
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99776 456799999999999985 78887 4 7889999999999999998877 4788888888877654 23
Q ss_pred HHHhhHhcccceEEEeccc
Q 041519 283 EAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 283 ~i~~L~~~L~~L~~~~~~~ 301 (521)
.+..++ +|+.|++..+..
T Consensus 174 ~~~~l~-~L~~L~l~~N~~ 191 (251)
T 3m19_A 174 AFDRLG-KLQTITLFGNQF 191 (251)
T ss_dssp TTTTCT-TCCEEECCSCCB
T ss_pred HHhCCC-CCCEEEeeCCce
Confidence 455666 666666655443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=8.4e-15 Score=152.02 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=91.3
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL 230 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 230 (521)
.+++++|++++|.+..+++..+..+++|++|++++|. +...++ ++.+++|++|++++|.++.+|.. ++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 3478889999988888876666688889999998887 655555 58888899999988888766542 7888888
Q ss_pred cccCCCCCccC-CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc
Q 041519 231 LRWCGILKRVP-SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 231 l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~ 280 (521)
+++|. +..+| . .+.+|++|++++|.+..+ |..++.+++|++|++...
T Consensus 106 L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 106 AANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp CCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred CcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 88876 66665 3 357888889988888765 445777777777766543
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=7.4e-16 Score=150.61 Aligned_cols=245 Identities=18% Similarity=0.149 Sum_probs=151.2
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCC--CCchhHh------hCCCCCcEEEccCCCCC-ccCccc-
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQ--RIPECFF------VHMHGLKVLNLCHTSIE-VLPNSV- 220 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~------~~l~~L~~L~L~~~~l~-~lp~~i- 220 (521)
.++++.+++.+|.+ .+|..+. ..|+.|++++|. +. .+|..+. .++++|++|++++|.+. .+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~---~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFT---DIIKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHH---HHHHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc-ccHHHHH---HHHhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34677778888888 7777655 238888888877 42 3555431 16889999999999887 678776
Q ss_pred -cCCcccceeecccCCCCCccC-CccCC-----CCCCEEEeeCCcCcccC-ccccCCCCCcccccccchHHHHhhHhccc
Q 041519 221 -SDLTNLRSLLLRWCGILKRVP-SLAKL-----LALQYLDLEGTWIEEVP-EGMEMLENLSHLSLFMAAEEAARLSDRLD 292 (521)
Q Consensus 221 -~~L~~L~~L~l~~~~~l~~lp-~~~~l-----~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~i~~L~~~L~ 292 (521)
+.+++|++|++++|. +...| .++.+ .+|++|++++|.+..++ ..++++++|++|++...
T Consensus 117 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N------------ 183 (312)
T 1wwl_A 117 EATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN------------ 183 (312)
T ss_dssp SCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC------------
T ss_pred HhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC------------
Confidence 788899999999876 66667 56666 88999999999888776 56777776666655543
Q ss_pred ceEEEeccccchhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcccccCccccceEEEecccCcccc
Q 041519 293 TFVGYFSTLNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEETIVLPEDVQYLEMFGVDDVASL 372 (521)
Q Consensus 293 ~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~p~~L~~L~l~~~~~l~~l 372 (521)
............. ....+.|+.|+++++.-
T Consensus 184 -------~l~~~~~~~~~~~---------------------------------------~~~l~~L~~L~L~~N~l---- 213 (312)
T 1wwl_A 184 -------PELGERGLISALC---------------------------------------PLKFPTLQVLALRNAGM---- 213 (312)
T ss_dssp -------TTCHHHHHHHHSC---------------------------------------TTSCTTCCEEECTTSCC----
T ss_pred -------CcCcchHHHHHHH---------------------------------------hccCCCCCEEECCCCcC----
Confidence 1111000000000 00012344444443310
Q ss_pred cccccCCCcccccccchhhccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccccccc
Q 041519 373 NDVLPREQGLNLFSLRLLPALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFKSICS 452 (521)
Q Consensus 373 ~~~~~~~~~l~~~p~~~l~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~ 452 (521)
.++...+...+..+++|++|+++++.-....+.. ....+++|++|+++++ +++.++.
T Consensus 214 -------~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------~~~~l~~L~~L~Ls~N-~l~~ip~ 270 (312)
T 1wwl_A 214 -------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP---------------SCDWPSQLNSLNLSFT-GLKQVPK 270 (312)
T ss_dssp -------CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS---------------CCCCCTTCCEEECTTS-CCSSCCS
T ss_pred -------cchHHHHHHHHhcCCCCCEEECCCCcCCcccchh---------------hhhhcCCCCEEECCCC-ccChhhh
Confidence 0111223333456788888888777432222111 1134678888888884 4666655
Q ss_pred CCCcccCCCccEEEEecCCCcccccCcCcccCCCCCCCCCCceEEEee
Q 041519 453 DNGVLVCNSLQEIEVYNCPKLKRLSLSLPLLDNGQPSPPPALEVIEIK 500 (521)
Q Consensus 453 ~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~~~~~~~~~L~~l~~~ 500 (521)
... ++|++|+++++ +++.+|. +.. +++|+.|++.
T Consensus 271 --~~~--~~L~~L~Ls~N-~l~~~p~-~~~--------l~~L~~L~L~ 304 (312)
T 1wwl_A 271 --GLP--AKLSVLDLSYN-RLDRNPS-PDE--------LPQVGNLSLK 304 (312)
T ss_dssp --SCC--SEEEEEECCSS-CCCSCCC-TTT--------SCEEEEEECT
T ss_pred --hcc--CCceEEECCCC-CCCCChh-Hhh--------CCCCCEEecc
Confidence 222 78888888887 4777766 433 4448888877
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=4.9e-14 Score=134.64 Aligned_cols=165 Identities=25% Similarity=0.337 Sum_probs=136.9
Q ss_pred EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...+..+..++. ....++++++|++.+|.+..++...+..+++|++|++++|. +..++...|..+++|++|++++|
T Consensus 41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS
T ss_pred EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC
Confidence 44445566666664 46678899999999999999999988889999999999998 88888887899999999999999
Q ss_pred CCCccCc-cccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------h
Q 041519 212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------A 281 (521)
Q Consensus 212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~ 281 (521)
.++.+|. .++.+++|++|++++|. +..+| . ++.+.+|++|++++|.++.+|.. +..+++|++|++... +
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 9997764 56899999999999986 88887 4 89999999999999999988765 788999999988754 2
Q ss_pred HHHHhhHhcccceEEEecc
Q 041519 282 EEAARLSDRLDTFVGYFST 300 (521)
Q Consensus 282 ~~i~~L~~~L~~L~~~~~~ 300 (521)
..++.++ +|+.|++..+.
T Consensus 199 ~~~~~l~-~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 GAFDSLE-KLKMLQLQENP 216 (270)
T ss_dssp TTTTTCT-TCCEEECCSSC
T ss_pred HHhcccc-CCCEEEecCCC
Confidence 2356667 77777665443
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=1.5e-14 Score=150.14 Aligned_cols=98 Identities=18% Similarity=0.129 Sum_probs=79.5
Q ss_pred CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEE
Q 041519 174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLD 253 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~ 253 (521)
.+++|++|++++|. +..+++..|+.+++|++|+|++|.+...++ ++.+++|++|++++|. +..+| ...+|++|+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEE
T ss_pred cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC---CCCCcCEEE
Confidence 45689999999998 777776667999999999999999986665 8999999999999985 77777 228999999
Q ss_pred eeCCcCcccCccccCCCCCccccccc
Q 041519 254 LEGTWIEEVPEGMEMLENLSHLSLFM 279 (521)
Q Consensus 254 l~~~~l~~lp~~i~~l~~L~~L~~~~ 279 (521)
+++|.+..+|.. .+++|++|++..
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~ 129 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLAN 129 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCS
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCC
Confidence 999998887653 355566555543
No 75
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=6.7e-14 Score=130.17 Aligned_cols=143 Identities=24% Similarity=0.392 Sum_probs=117.4
Q ss_pred EEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCC
Q 041519 134 MVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSI 213 (521)
Q Consensus 134 ~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 213 (521)
+...+..+..+|... .+++++|++++|.+..+++..+..+++|++|++++|. +..+|...|..+++|++|++++|.+
T Consensus 24 v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC
Confidence 445566677777643 3789999999999998877767788999999999998 7888887778999999999999999
Q ss_pred CccCcc-ccCCcccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519 214 EVLPNS-VSDLTNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA 280 (521)
Q Consensus 214 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~ 280 (521)
+.+|.. +..+.+|++|++++|. +..+| .+..+.+|++|++++|.++.+|.. +..+.+|++|++...
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 877654 5789999999999976 88898 889999999999999988888754 677777777776544
No 76
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.54 E-value=7.9e-16 Score=162.04 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhHHHHHH
Q 041519 7 PALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFL 86 (521)
Q Consensus 7 p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~lk~cfl 86 (521)
++++++++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+... .+. ...+++.+++++||++|| .++|.||+
T Consensus 312 ~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~-l~~-~~~~~i~~~l~~Sy~~L~-~~lk~~f~ 383 (549)
T 2a5y_B 312 GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNK-LES-RGLVGVECITPYSYKSLA-MALQRCVE 383 (549)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHH-HHH-HCSSTTCCCSSSSSSSHH-HHHHHHHH
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHH-hhc-ccHHHHHHHHhccccccc-HHHHHHHh
Confidence 47889999999999999999999999999875 3 5443 333221 111 013578899999999999 89999999
Q ss_pred -----------HHHH-------------Hh------------------HHHHHHHHccccccccCC--CccccchHHHHH
Q 041519 87 -----------YCAL-------------GH------------------TILNRLVNCCLLESAKDG--SCVKMHDLIRDM 122 (521)
Q Consensus 87 -----------~~s~-------------g~------------------~~~~~L~~~~l~~~~~~~--~~~~mhdli~dl 122 (521)
|||+ ++ .||++|+++||++.+..+ .+|+|||++|++
T Consensus 384 ~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~ 463 (549)
T 2a5y_B 384 VLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMF 463 (549)
T ss_dssp TSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHH
T ss_pred ccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHH
Confidence 9998 33 389999999999987643 579999999999
Q ss_pred HHHHhccCC
Q 041519 123 ALRITSKSP 131 (521)
Q Consensus 123 ~~~i~~~~~ 131 (521)
|+.++.+++
T Consensus 464 a~~~~~~~~ 472 (549)
T 2a5y_B 464 LKHVVDAQT 472 (549)
T ss_dssp HHTTSCTHH
T ss_pred HHHHHHHHH
Confidence 998886654
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=6.4e-14 Score=136.49 Aligned_cols=143 Identities=22% Similarity=0.263 Sum_probs=97.0
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL 230 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 230 (521)
++++++|++.++.+..++. + ..+++|++|++++|. +..++. +..+++|++|++++|.+..+| .++.+.+|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l~~-~-~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG-V-QYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCchh-h-hccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 4567777777777777652 3 367777777777776 666666 477777777777777777665 467777777777
Q ss_pred cccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEecccc
Q 041519 231 LRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLN 302 (521)
Q Consensus 231 l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~ 302 (521)
+++|. +..+|.+..+.+|++|++++|.+..++. ++.+++|++|++..+ ...++.++ +|+.|++..+.+.
T Consensus 114 l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLS-KLTTLKADDNKIS 186 (308)
T ss_dssp CTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCC
T ss_pred CCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCC-CCCEEECCCCccC
Confidence 77765 6666667777777777777777776665 666777777766544 11255666 6666666555443
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=8.7e-16 Score=158.53 Aligned_cols=67 Identities=22% Similarity=0.188 Sum_probs=36.9
Q ss_pred hccCCCcEEEEecccchhhhhccCcchhhhhhhcccccccccCCccceeecCCccccc-----ccccCCCcccCCCccEE
Q 041519 391 PALQNLEVLAVGYCFLIEEIVAVEDEETEKELATNTIINTVTLPRLKKLHLEDLREFK-----SICSDNGVLVCNSLQEI 465 (521)
Q Consensus 391 ~~L~~L~~L~L~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~-----~~~~~~~~~~~p~L~~L 465 (521)
..+++|++|+++++. +....... +... -....++|++|++.+|. +. .++. ....+++|++|
T Consensus 338 ~~~~~L~~L~Ls~n~-i~~~~~~~-------l~~~---l~~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~~~~~L~~L 403 (461)
T 1z7x_W 338 AQNRFLLELQISNNR-LEDAGVRE-------LCQG---LGQPGSVLRVLWLADCD-VSDSSCSSLAA--TLLANHSLREL 403 (461)
T ss_dssp HHCSSCCEEECCSSB-CHHHHHHH-------HHHH---HTSTTCCCCEEECTTSC-CCHHHHHHHHH--HHHHCCCCCEE
T ss_pred hhCCCccEEEccCCc-cccccHHH-------HHHH---HcCCCCceEEEECCCCC-CChhhHHHHHH--HHHhCCCccEE
Confidence 566788888887773 33221100 0000 00125688888888763 44 2332 23346888888
Q ss_pred EEecCC
Q 041519 466 EVYNCP 471 (521)
Q Consensus 466 ~i~~C~ 471 (521)
++++|+
T Consensus 404 ~l~~N~ 409 (461)
T 1z7x_W 404 DLSNNC 409 (461)
T ss_dssp ECCSSS
T ss_pred ECCCCC
Confidence 888874
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=2.4e-14 Score=152.52 Aligned_cols=146 Identities=16% Similarity=0.108 Sum_probs=101.2
Q ss_pred ccCCccEEEeecCCCCCCCCC----cCCCCCCccEEEcccCcCCCCCc----hhHhhCCCCCcEEEccCCCCCccCcccc
Q 041519 150 WEENLERVSLMENDFEEIPSN----MSPHCEILSTLLLQHNKYLQRIP----ECFFVHMHGLKVLNLCHTSIEVLPNSVS 221 (521)
Q Consensus 150 ~~~~l~~L~l~~~~~~~l~~~----~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~l~~lp~~i~ 221 (521)
.++++++|++.+|.+...... +...+++|++|++++|. +..+. ..++.++++|+.|++++|.+..+|..++
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 457888888888876543221 22356788888888877 44222 2234678888888888888877787788
Q ss_pred CCcccceeecccCCCC---CccC-CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-------hHHHHhhHhc
Q 041519 222 DLTNLRSLLLRWCGIL---KRVP-SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-------AEEAARLSDR 290 (521)
Q Consensus 222 ~L~~L~~L~l~~~~~l---~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-------~~~i~~L~~~ 290 (521)
.+++|++|+++++... ...+ .+..+.+|+.|+++++....+|..+..+++|++|++..+ ...++.++ +
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~-~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP-N 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT-T
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc-C
Confidence 8888888888753322 2233 567778888888877766677777777888888887655 12346677 8
Q ss_pred ccceEEE
Q 041519 291 LDTFVGY 297 (521)
Q Consensus 291 L~~L~~~ 297 (521)
|++|++.
T Consensus 320 L~~L~L~ 326 (592)
T 3ogk_B 320 LEVLETR 326 (592)
T ss_dssp CCEEEEE
T ss_pred CCEEecc
Confidence 8888776
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=4.3e-14 Score=136.39 Aligned_cols=163 Identities=23% Similarity=0.234 Sum_probs=133.7
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|... .++++.|++++|.+..++...+..+++|+.|++++|. +..++.. +.+++|++|++++|.
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 14 EVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD--GTLPVLGTLDLSHNQ 88 (290)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC--SCCTTCCEEECCSSC
T ss_pred EEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC--CCCCcCCEEECCCCc
Confidence 3445666777777644 3689999999999998877767799999999999998 8887763 789999999999999
Q ss_pred CCccCccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc-----h-HH
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA-----A-EE 283 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~-----~-~~ 283 (521)
+..+|..+..+++|++|++++|. +..+| .+..+.+|++|++++|.++.+|.+ +..+++|++|++... + ..
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHH
Confidence 99999999999999999999986 77876 589999999999999999988876 577888888887654 2 23
Q ss_pred HHhhHhcccceEEEecccc
Q 041519 284 AARLSDRLDTFVGYFSTLN 302 (521)
Q Consensus 284 i~~L~~~L~~L~~~~~~~~ 302 (521)
+..++ +|+.|++..+.+.
T Consensus 168 ~~~l~-~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 168 LNGLE-NLDTLLLQENSLY 185 (290)
T ss_dssp TTTCT-TCCEEECCSSCCC
T ss_pred hcCcC-CCCEEECCCCcCC
Confidence 45677 7777776655443
No 81
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.6e-13 Score=126.81 Aligned_cols=144 Identities=22% Similarity=0.315 Sum_probs=118.8
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|... .++++.|++.+|.+..++...+..+++|+.|++++|. +..+++..|.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc
Confidence 3455667777888643 3689999999999999998777789999999999998 777765556999999999999999
Q ss_pred CCccCcc-ccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519 213 IEVLPNS-VSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA 280 (521)
Q Consensus 213 l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~ 280 (521)
++.+|.. +..+.+|++|++++|. +..++ .+..+.+|++|++++|.++.+|.. +..+++|++|++...
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9988865 5789999999999986 77764 689999999999999999988764 777777777766543
No 82
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=3.4e-13 Score=123.34 Aligned_cols=142 Identities=27% Similarity=0.385 Sum_probs=118.0
Q ss_pred EecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519 135 VTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214 (521)
Q Consensus 135 ~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 214 (521)
...+..+..+|.. ..+++++|++++|.+..++...+..+++|++|++++|. +..++...|..+++|++|++++|.++
T Consensus 13 ~c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 13 ECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp ECCSSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EecCCCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCC
Confidence 3445556666653 34689999999999999998877789999999999998 88888887789999999999999999
Q ss_pred ccCcc-ccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519 215 VLPNS-VSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA 280 (521)
Q Consensus 215 ~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~ 280 (521)
.+|.. ++.+.+|++|++++|. +..+| . +..+.+|++|++++|.++.+|.. +..+++|++|++...
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 87754 6899999999999986 77777 4 78999999999999999888775 667777777766543
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=2.3e-13 Score=132.59 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=142.0
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..++ ....++++++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.
T Consensus 45 ~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 45 TLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVSA--IAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCEEECTTSC
T ss_pred EEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCchh--hcCCCCCCEEECCCCC
Confidence 3445556666666 45677899999999999999887 4589999999999998 888764 5899999999999999
Q ss_pred CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhH
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLS 288 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~ 288 (521)
++.+|. ++.+++|++|++++|. +..++.++.+.+|++|++++|.++.++. +..+++|++|++... ...+..++
T Consensus 119 l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~ 195 (308)
T 1h6u_A 119 ITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLP 195 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred CCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCC
Confidence 998876 8999999999999986 8888778899999999999999998877 889999999988755 22377888
Q ss_pred hcccceEEEeccccchhhhhhccCCCCCCcceee
Q 041519 289 DRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLL 322 (521)
Q Consensus 289 ~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 322 (521)
+|+.|++..+.+..... ...+.+|+.+.+
T Consensus 196 -~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l 224 (308)
T 1h6u_A 196 -NLIEVHLKNNQISDVSP----LANTSNLFIVTL 224 (308)
T ss_dssp -TCCEEECTTSCCCBCGG----GTTCTTCCEEEE
T ss_pred -CCCEEEccCCccCcccc----ccCCCCCCEEEc
Confidence 89999887666554432 333445555443
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=4e-14 Score=132.63 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=146.4
Q ss_pred cccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC-CCCCccC-c
Q 041519 141 LLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH-TSIEVLP-N 218 (521)
Q Consensus 141 ~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~lp-~ 218 (521)
+..+|. ..+++++|++++|.++.++...+..+++|++|++++|..++.+++..|..+++|++|++++ |.++.+| .
T Consensus 23 l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 566776 4458999999999999999877778999999999999657888876678999999999998 8899776 4
Q ss_pred cccCCcccceeecccCCCCCccCCccCCCCCC---EEEeeCC-cCcccCcc-ccCCCCCc-ccccccc-----hHHHHhh
Q 041519 219 SVSDLTNLRSLLLRWCGILKRVPSLAKLLALQ---YLDLEGT-WIEEVPEG-MEMLENLS-HLSLFMA-----AEEAARL 287 (521)
Q Consensus 219 ~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~~~~~-----~~~i~~L 287 (521)
.+..+++|++|++++|. +..+|.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++... +......
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 67899999999999986 78888888888888 9999999 99988875 78899999 8887643 3333334
Q ss_pred HhcccceEEEecc-ccchhhhhhccCCC-CCCcceeeeecCCCCCCccccceeeeeeeeeec
Q 041519 288 SDRLDTFVGYFST-LNDFNIYVKSTDGR-GSKNYCLLLSASGKRGFLEVDKSVRLFACKICE 347 (521)
Q Consensus 288 ~~~L~~L~~~~~~-~~~~~~~~~~~~~l-~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~ 347 (521)
+ +|+.|++..+. +..+... ....+ .+|+.+.+..... ...+.....+|+.|.+.+
T Consensus 179 ~-~L~~L~L~~n~~l~~i~~~--~~~~l~~~L~~L~l~~N~l--~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 179 T-KLDAVYLNKNKYLTVIDKD--AFGGVYSGPSLLDVSQTSV--TALPSKGLEHLKELIARN 235 (239)
T ss_dssp C-EEEEEECTTCTTCCEECTT--TTTTCSBCCSEEECTTCCC--CCCCCTTCTTCSEEECTT
T ss_pred C-CCCEEEcCCCCCcccCCHH--HhhccccCCcEEECCCCcc--ccCChhHhccCceeeccC
Confidence 6 88888876663 5443221 12234 5666666543222 222223344677776654
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=4.6e-13 Score=126.34 Aligned_cols=146 Identities=25% Similarity=0.340 Sum_probs=125.6
Q ss_pred EEEecCcccccCCC-cccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPG-EQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...++.+..++. ....++++++|++++|.+..++...+..+++|++|++++|. +..++...|+.+++|++|++++|
T Consensus 39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC
Confidence 44455556655544 45667899999999999999998877799999999999998 88888887899999999999999
Q ss_pred CCCccCcc-ccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCc-cccCCCCCcccccccc
Q 041519 212 SIEVLPNS-VSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPE-GMEMLENLSHLSLFMA 280 (521)
Q Consensus 212 ~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~ 280 (521)
.++.+|.. ++.+.+|++|++++|. +..+| .++.+.+|++|++++|.++.+|. .+..+++|++|++...
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 99988765 5789999999999985 88887 58999999999999999998876 5888999999988765
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.47 E-value=8.6e-14 Score=135.89 Aligned_cols=109 Identities=21% Similarity=0.215 Sum_probs=65.3
Q ss_pred cCCccEEEeecCCCC-CCCCCcC-CCCCCccEEEcccCcCCCCCchhHhhCC-----CCCcEEEccCCCCCccC-ccccC
Q 041519 151 EENLERVSLMENDFE-EIPSNMS-PHCEILSTLLLQHNKYLQRIPECFFVHM-----HGLKVLNLCHTSIEVLP-NSVSD 222 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~-~l~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~l~~lp-~~i~~ 222 (521)
++++++|++++|.+. .+|..++ ..+++|++|++++|. +..+|..+ +.+ ++|++|++++|.+..++ ..++.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 456677777777666 3555442 466677777777666 55554433 444 66777777777666554 56666
Q ss_pred CcccceeecccCCCCCc--cC-Cc--cCCCCCCEEEeeCCcCcc
Q 041519 223 LTNLRSLLLRWCGILKR--VP-SL--AKLLALQYLDLEGTWIEE 261 (521)
Q Consensus 223 L~~L~~L~l~~~~~l~~--lp-~~--~~l~~L~~L~l~~~~l~~ 261 (521)
+++|++|++++|..... +| .+ +.+.+|++|++++|.++.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence 66777777766653322 23 23 666667777776666553
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=3.4e-13 Score=128.87 Aligned_cols=126 Identities=31% Similarity=0.490 Sum_probs=68.0
Q ss_pred cccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccc
Q 041519 149 EWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLR 227 (521)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~ 227 (521)
..++++++|++.+|.+..++ .+ ..+++|++|++++|. +..++...|+.+++|++|++++|.+..+|.. ++.+.+|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 34455666666666555543 22 355566666666655 5555554445566666666666655544432 45556666
Q ss_pred eeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccc
Q 041519 228 SLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLF 278 (521)
Q Consensus 228 ~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~ 278 (521)
+|++++|. +..+| .++.+.+|++|++++|.++.+|.. ++.+++|++|++.
T Consensus 137 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 137 YLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 66666553 44554 245566666666666655554443 3445555555444
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.3e-13 Score=123.83 Aligned_cols=144 Identities=23% Similarity=0.325 Sum_probs=110.4
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCC-CCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIP-SNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...+..+..+|... ...+++|++++|.+..++ ...+..+++|++|++++|. +..++...|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC
Confidence 3445566667777643 346788999999888874 4555688899999998888 77777766688899999999999
Q ss_pred CCCccCc-cccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc
Q 041519 212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~ 280 (521)
.++.+|. .++.+.+|++|++++|. +..+ | .+..+.+|++|++++|.++.+ |..+..+++|++|++...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 8887764 47788899999999876 6666 4 688889999999999988876 666777777777766543
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=2.1e-13 Score=123.71 Aligned_cols=144 Identities=13% Similarity=0.199 Sum_probs=115.0
Q ss_pred cccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc-cCccccCCcccc
Q 041519 149 EWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV-LPNSVSDLTNLR 227 (521)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~L~~L~ 227 (521)
..++++++|++++|.+..+| .+ ..+++|++|++++|. +..++. +..+++|++|++++|.++. .|..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIH-ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCC-CSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCC-CCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44568999999999999888 44 488999999999995 766653 5889999999999999884 688899999999
Q ss_pred eeecccCCCCCc-cC-CccCCCCCCEEEeeCCc-CcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEecc
Q 041519 228 SLLLRWCGILKR-VP-SLAKLLALQYLDLEGTW-IEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFST 300 (521)
Q Consensus 228 ~L~l~~~~~l~~-lp-~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~ 300 (521)
+|++++|. +.. .| .++.+.+|++|++++|. ++.+| .++.+++|++|++..+ ...+..++ +|+.|++..+.
T Consensus 116 ~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~-~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCS-SCCEEEECBC-
T ss_pred EEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCC-CCCEEEeeCcc
Confidence 99999987 554 56 78999999999999996 88887 5888888888877654 22556666 67766665443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=8e-14 Score=137.50 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=102.1
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCC--CchhHhhCCCCCcEEEccCCCCC-ccCccccCCcccce
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQR--IPECFFVHMHGLKVLNLCHTSIE-VLPNSVSDLTNLRS 228 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~ 228 (521)
+.++.+++.+|.+...+...+ .+++|++|++++|. +.. ++. ++..+++|++|++++|.+. ..|..++.+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~-l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSV-IEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCE-ECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccchhhc-cCCCCCEEEccCCC-cCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 578999999999888777766 78999999999997 543 444 4589999999999999887 67788889999999
Q ss_pred eecccCCCCCc--cC-CccCCCCCCEEEeeCC-cCcc--cCccccCCC-CCcccccccc
Q 041519 229 LLLRWCGILKR--VP-SLAKLLALQYLDLEGT-WIEE--VPEGMEMLE-NLSHLSLFMA 280 (521)
Q Consensus 229 L~l~~~~~l~~--lp-~~~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~~~~~ 280 (521)
|++++|..+.. +| .+..+++|++|++++| .++. ++..++.++ +|++|++..+
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 99999866774 67 5888999999999999 8874 566677777 7777766543
No 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=7.1e-13 Score=132.11 Aligned_cols=164 Identities=24% Similarity=0.289 Sum_probs=134.5
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCC-CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSP-HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...+..+..+|.. ....++.|++++|.++.++...+. .+++|+.|++++|. +..+++..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC
Confidence 455566777888864 345799999999999999998877 89999999999998 88888776799999999999999
Q ss_pred CCCccCc-cccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCcccCccc----cCCCCCcccccccc----
Q 041519 212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIEEVPEGM----EMLENLSHLSLFMA---- 280 (521)
Q Consensus 212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~~~~~---- 280 (521)
.++.+|. .+..+.+|++|++++|. +..+ | .+..+.+|++|++++|.++.+|..+ ..+.+|++|++...
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 9997765 57899999999999987 7776 4 7999999999999999999999875 57889999988754
Q ss_pred --hHHHHhhHhc--ccceEEEeccc
Q 041519 281 --AEEAARLSDR--LDTFVGYFSTL 301 (521)
Q Consensus 281 --~~~i~~L~~~--L~~L~~~~~~~ 301 (521)
...+..++ . ++.|++..+..
T Consensus 178 l~~~~~~~l~-~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLP-AWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSC-HHHHTTEECCSSCE
T ss_pred cCHHHhhhcc-HhhcceEEecCCCc
Confidence 34566666 5 36777655443
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=4.4e-14 Score=150.53 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=20.6
Q ss_pred CCccceeecCC---cccccccccCC----CcccCCCccEEEEecCCC
Q 041519 433 LPRLKKLHLED---LREFKSICSDN----GVLVCNSLQEIEVYNCPK 472 (521)
Q Consensus 433 f~~L~~L~l~~---~~~L~~~~~~~----~~~~~p~L~~L~i~~C~~ 472 (521)
+++|+.|++.+ |..+...+... ....+++|++|++++|..
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 56667776653 33444322110 022356777777766653
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=4.6e-13 Score=124.49 Aligned_cols=141 Identities=25% Similarity=0.309 Sum_probs=118.4
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeecc
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLR 232 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~ 232 (521)
.+.++..++.+..+|..+. ++|++|++++|. +..+++..|..+++|++|++++|.+..+|.. +..+.+|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 5678999999999998765 899999999998 7777666679999999999999999988754 5899999999999
Q ss_pred cCCCCCccC--CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc------hHHHHhhHhcccceEEEecc
Q 041519 233 WCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFST 300 (521)
Q Consensus 233 ~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~ 300 (521)
+|. +..+| .+..+.+|++|++++|.++.+|..+..+.+|++|++... +..+..++ +|+.|++..+.
T Consensus 97 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~ 170 (229)
T 3e6j_A 97 TNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS-SLTHAYLFGNP 170 (229)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSC
T ss_pred CCc-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCC-CCCEEEeeCCC
Confidence 985 88887 478999999999999999999999999999999887654 23355666 66666654443
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=8.6e-13 Score=127.34 Aligned_cols=160 Identities=22% Similarity=0.292 Sum_probs=90.4
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL 230 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 230 (521)
++++++|++.++.+..++. + ..+++|++|++++|. +..+++ +..+++|++|++++|.+..+|. ++.+.+|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~-~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccChh-H-hcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 3456666666666665543 2 255666666666665 555554 3566666666666666655543 56666666666
Q ss_pred cccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEeccccchhh
Q 041519 231 LRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLNDFNI 306 (521)
Q Consensus 231 l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~~~~~ 306 (521)
+++|. +..++.+..+.+|++|++++|.++.+ ..++.+++|++|++..+ ...++.++ +|+.|++..+.+..+.
T Consensus 119 L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~-~L~~L~L~~N~i~~l~- 194 (291)
T 1h6t_A 119 LEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLT-KLQNLYLSKNHISDLR- 194 (291)
T ss_dssp CTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCBCG-
T ss_pred CCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCC-ccCEEECCCCcCCCCh-
Confidence 66654 55555556666666666666666555 34556666666655433 11155566 6666666555544432
Q ss_pred hhhccCCCCCCcceeee
Q 041519 307 YVKSTDGRGSKNYCLLL 323 (521)
Q Consensus 307 ~~~~~~~l~~L~~l~~~ 323 (521)
....+.+|+.+.+.
T Consensus 195 ---~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 195 ---ALAGLKNLDVLELF 208 (291)
T ss_dssp ---GGTTCTTCSEEEEE
T ss_pred ---hhccCCCCCEEECc
Confidence 23345555555544
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=7.9e-13 Score=127.59 Aligned_cols=160 Identities=23% Similarity=0.300 Sum_probs=135.4
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..++. ...++++++|++++|.+..++. +..+++|++|++++|. +..++. ++.+++|++|++++|.
T Consensus 50 ~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 50 QIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLEHNG 123 (291)
T ss_dssp EEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG--GTTCTTCCEEECTTSC
T ss_pred EEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh--hccCCCCCEEECCCCc
Confidence 44556666666654 5667899999999999999887 4589999999999998 777766 5899999999999999
Q ss_pred CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhH
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLS 288 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~ 288 (521)
+..++ .++.+++|++|++++|. +..++.++.+.+|++|++++|.+..++. +..+++|++|++... ...+..++
T Consensus 124 i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~ 200 (291)
T 1h6t_A 124 ISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLK 200 (291)
T ss_dssp CCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred CCCCh-hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhccCC
Confidence 99875 58899999999999986 8888889999999999999999998876 899999999988755 23478888
Q ss_pred hcccceEEEecccc
Q 041519 289 DRLDTFVGYFSTLN 302 (521)
Q Consensus 289 ~~L~~L~~~~~~~~ 302 (521)
+|+.|++..+.+.
T Consensus 201 -~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 201 -NLDVLELFSQECL 213 (291)
T ss_dssp -TCSEEEEEEEEEE
T ss_pred -CCCEEECcCCccc
Confidence 9999998776553
No 96
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.42 E-value=1.9e-13 Score=158.15 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=102.1
Q ss_pred CChhHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCC-----CchhhHHHHHHHHhHhcCCchh
Q 041519 6 VPALNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSL-----NDVDTKVFGRLEFSYHRLKDEK 80 (521)
Q Consensus 6 ~p~~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~-----~~~~~~i~~~L~lSY~~L~~~~ 80 (521)
.++++.+++++|+++|+|+||||+++|+.|+.+. ..|+..++.+....... ....+.+..++.+||+.|| .+
T Consensus 302 ~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~-~~ 378 (1249)
T 3sfz_A 302 KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-ED 378 (1249)
T ss_dssp CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC-TT
T ss_pred ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCC-HH
Confidence 4556678899999999999999999999999853 47999999986654332 1123579999999999999 89
Q ss_pred HHHHHHHHHH----------------------HhHHHHHHHHccccccccCC--CccccchHHHHHHHHHhccC
Q 041519 81 LQQCFLYCAL----------------------GHTILNRLVNCCLLESAKDG--SCVKMHDLIRDMALRITSKS 130 (521)
Q Consensus 81 lk~cfl~~s~----------------------g~~~~~~L~~~~l~~~~~~~--~~~~mhdli~dl~~~i~~~~ 130 (521)
.|+||+|||+ ++.++++|+++||++....+ ..|+|||++|++++..+.++
T Consensus 379 ~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 379 IKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp THHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999997 67899999999999977654 35999999999999887654
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=5.5e-13 Score=123.14 Aligned_cols=140 Identities=26% Similarity=0.383 Sum_probs=117.5
Q ss_pred cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-CccccCCcccceeeccc
Q 041519 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLRW 233 (521)
Q Consensus 155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~ 233 (521)
+.++..++.++.+|..+. ++++.|++++|. +..++...|..+++|++|++++|.+..+ |..+..+.+|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 678889999999998765 689999999998 8888887679999999999999999966 78899999999999999
Q ss_pred CCCCCccC-C-ccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hHHHHhhHhcccceEEEecc
Q 041519 234 CGILKRVP-S-LAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFST 300 (521)
Q Consensus 234 ~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~ 300 (521)
|. +..+| . +..+.+|++|++++|.++.+ |..+..+.+|++|++... +..++.++ +|+.|++..+.
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~ 163 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQNP 163 (220)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSC
T ss_pred Cc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEEeCCCC
Confidence 86 88888 4 78999999999999999977 456888888888887654 23356666 77777665443
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=2.2e-12 Score=123.26 Aligned_cols=145 Identities=28% Similarity=0.449 Sum_probs=121.5
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...++.+..++ ....++++++|++++|.+..++...+..+++|++|++++|. +..+++..|+.+++|++|++++|.
T Consensus 67 ~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 67 YLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp EEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCc
Confidence 4444555555544 45667899999999999999998877799999999999998 888888877999999999999999
Q ss_pred CCccCcc-ccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519 213 IEVLPNS-VSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA 280 (521)
Q Consensus 213 l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~ 280 (521)
++.+|.. ++.+.+|++|++++|. +..+| .++.+.+|++|++++|.++.+|.. ++.+++|++|++...
T Consensus 145 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 145 LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 9977654 5899999999999986 77777 478999999999999999887765 677887777776554
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=4.3e-13 Score=132.25 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=78.3
Q ss_pred CccEEEeecCCCCCCCCCcCCCC--CCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-c-cCccccCCcccce
Q 041519 153 NLERVSLMENDFEEIPSNMSPHC--EILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-V-LPNSVSDLTNLRS 228 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~-lp~~i~~L~~L~~ 228 (521)
.++++++.++.+. + .....+ ++++.|++.+|. +...+..+ ..+++|++|++++|.+. . +|..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~--~-~~~~~~~~~~l~~L~l~~n~-l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH--P-DVTGRLLSQGVIAFRCPRSF-MDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC--H-HHHHHHHHTTCSEEECTTCE-ECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC--H-HHHHhhhhccceEEEcCCcc-ccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4778888877654 2 222244 678888888887 55544444 57888888888888776 2 6777778888888
Q ss_pred eecccCCCCCccC-CccCCCCCCEEEeeCC-cCcc--cCccccCCCCCccc
Q 041519 229 LLLRWCGILKRVP-SLAKLLALQYLDLEGT-WIEE--VPEGMEMLENLSHL 275 (521)
Q Consensus 229 L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L 275 (521)
|++++|......| .++.+++|++|++++| .++. +|..++.+++|++|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 8888875333455 6777888888888888 5552 34333333333333
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=5.6e-13 Score=123.05 Aligned_cols=142 Identities=19% Similarity=0.259 Sum_probs=119.1
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCC-chhHhhCCCCCcEEEccCCCCCccCc-cccCCcccceeec
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRI-PECFFVHMHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLL 231 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l 231 (521)
.+.++++++.+..+|..+. ..++.|++++|. +..+ +..+|+.+++|++|++++|.++.++. .++.+.+|++|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP---QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcccCccCCC---CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 4689999999999998765 567899999998 7776 45567999999999999999997765 7899999999999
Q ss_pred ccCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc------hHHHHhhHhcccceEEEeccc
Q 041519 232 RWCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 232 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~~~~ 301 (521)
++|. +..+| .+..+.+|++|++++|.++.+ |..+..+.+|++|++... +..++.++ +|+.|++..+..
T Consensus 89 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l 165 (220)
T 2v70_A 89 TSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-SLSTLNLLANPF 165 (220)
T ss_dssp CSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-TCCEEECCSCCE
T ss_pred CCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC-CCCEEEecCcCC
Confidence 9986 77776 499999999999999999977 667889999999988654 55677777 888887765544
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=6.8e-13 Score=126.05 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=114.2
Q ss_pred ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccc
Q 041519 148 QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLR 227 (521)
Q Consensus 148 ~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 227 (521)
...++++++|++.+|.+..++ .+ ..+++|+.|++++|. +..+++ ++.+++|++|++++|.++.+|.... .+|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred hhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 445678999999999999887 44 478999999999998 888887 5899999999999999998876433 8999
Q ss_pred eeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEecc
Q 041519 228 SLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFST 300 (521)
Q Consensus 228 ~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~ 300 (521)
+|++++|. +..+|.++.+.+|++|++++|.++.+| .++.+++|++|++... ...+..++ +|+.|++..+.
T Consensus 110 ~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLK-KVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCC-CCCEEEEEEEE
T ss_pred EEEccCCc-cCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCC-CCCEEeCCCCc
Confidence 99999985 888888889999999999999988886 5778888888877654 23345555 66666655443
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=1.1e-12 Score=118.91 Aligned_cols=142 Identities=15% Similarity=0.272 Sum_probs=120.2
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCC-CchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQR-IPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...+..+..+| ....++++++|++++|.+..++ . +..+++|++|++++|. +.. .+.. ++.+++|++|++++|
T Consensus 48 ~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~-l~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 48 YITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-P-ISGLSNLERLRIMGKD-VTSDKIPN-LSGLTSLTLLDISHS 122 (197)
T ss_dssp EEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-G-GTTCTTCCEEEEECTT-CBGGGSCC-CTTCTTCCEEECCSS
T ss_pred EEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-h-hhcCCCCCEEEeECCc-cCcccChh-hcCCCCCCEEEecCC
Confidence 3445566677777 5677889999999999887765 3 3489999999999998 554 4444 589999999999999
Q ss_pred CCC-ccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519 212 SIE-VLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 212 ~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 280 (521)
.+. ..|..++.+++|++|++++|..+..+|.+..+++|++|++++|.+..++ .+..+++|++|++...
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 998 4678899999999999999876888888999999999999999999887 7899999999988754
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.1e-12 Score=115.58 Aligned_cols=124 Identities=23% Similarity=0.202 Sum_probs=99.9
Q ss_pred CCccEEEeecCCCC--CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc-cCccccCCcccce
Q 041519 152 ENLERVSLMENDFE--EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV-LPNSVSDLTNLRS 228 (521)
Q Consensus 152 ~~l~~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~ 228 (521)
+++++|++.+|.+. .+|..+ ..+++|++|++++|. +..+ .. ++.+++|++|++++|.+.. +|..++.+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVG-LISV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSC-CCCC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCC-CCCh-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 57899999999988 777664 478999999999988 7766 33 5889999999999999886 7776777999999
Q ss_pred eecccCCCCCccC---CccCCCCCCEEEeeCCcCcccCc----cccCCCCCcccccccc
Q 041519 229 LLLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEVPE----GMEMLENLSHLSLFMA 280 (521)
Q Consensus 229 L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~~~~ 280 (521)
|++++|. +..+| .+..+.+|++|++++|.+..+|. .+..+++|++|++..+
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999985 77764 58889999999999998888776 5667777777766543
No 104
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=8.6e-14 Score=143.52 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=27.0
Q ss_pred hCCCCCcEEEccCCCCCc-cCcccc-----CCcccceeecccCCCCCc-----cC-CccCCCCCCEEEeeCCcCc
Q 041519 198 VHMHGLKVLNLCHTSIEV-LPNSVS-----DLTNLRSLLLRWCGILKR-----VP-SLAKLLALQYLDLEGTWIE 260 (521)
Q Consensus 198 ~~l~~L~~L~L~~~~l~~-lp~~i~-----~L~~L~~L~l~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~l~ 260 (521)
..+++|++|++++|.+.. .+..+. ...+|++|++++|. +.. ++ .+..+++|++|++++|.+.
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 455555555555554431 111111 13345555555543 322 22 2344455555555555443
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=3.5e-14 Score=151.30 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=77.1
Q ss_pred cCCccEEEeecCCCCCCC-CCcCCCCCCccEEEcccCcCCCCC-chhHhhCCCCCcEEEccCCCCCc-----cCccccCC
Q 041519 151 EENLERVSLMENDFEEIP-SNMSPHCEILSTLLLQHNKYLQRI-PECFFVHMHGLKVLNLCHTSIEV-----LPNSVSDL 223 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i~~L 223 (521)
.+++++|++.++.+.... ..+...+++|++|++.+|..+... ...++..+++|++|++++|.+.. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 457788888877655321 112224678888888877434331 22334577888888888776442 23323356
Q ss_pred cccceeecccCC-CCC--ccC-CccCCCCCCEEEeeCC-cCcccCccccCCCCCccccc
Q 041519 224 TNLRSLLLRWCG-ILK--RVP-SLAKLLALQYLDLEGT-WIEEVPEGMEMLENLSHLSL 277 (521)
Q Consensus 224 ~~L~~L~l~~~~-~l~--~lp-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~~ 277 (521)
++|++|++++|. .+. .++ -+.++++|++|++++| .+..+|..+..+++|++|.+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 678888888764 111 122 1345678888888887 66666666677777777764
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=7.6e-13 Score=114.11 Aligned_cols=122 Identities=21% Similarity=0.220 Sum_probs=104.5
Q ss_pred CCccEEEeecCCCC--CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCc-cCccccCCcccce
Q 041519 152 ENLERVSLMENDFE--EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEV-LPNSVSDLTNLRS 228 (521)
Q Consensus 152 ~~l~~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~ 228 (521)
+++++|++++|.+. .+|..+ ..+++|++|++++|. +..+ . .++.+++|++|++++|.+.. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~-~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVG-LTSI-A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSC-CCCC-T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCC-CCCc-h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 58999999999998 787754 489999999999998 7777 3 35899999999999999996 7877778999999
Q ss_pred eecccCCCCCccC---CccCCCCCCEEEeeCCcCcccCc----cccCCCCCcccccc
Q 041519 229 LLLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEVPE----GMEMLENLSHLSLF 278 (521)
Q Consensus 229 L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~~ 278 (521)
|++++|. +..+| .++.+++|++|++++|.++.+|. .++.+++|++|++.
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999986 77653 68999999999999999988876 57788888888754
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=4.7e-12 Score=115.73 Aligned_cols=139 Identities=25% Similarity=0.351 Sum_probs=112.4
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeecc
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLR 232 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~ 232 (521)
.+.++..++.+..+|..+. ++|++|++++|. +..++...|+.+++|++|++++|.++.+|.. +..+.+|++|+++
T Consensus 9 ~~~v~c~~~~l~~~p~~~~---~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGIP---AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCccCCCCCCC---CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 4678888888999998764 689999999998 8888888779999999999999999988764 5799999999999
Q ss_pred cCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc------hHHHHhhHhcccceEEEe
Q 041519 233 WCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA------AEEAARLSDRLDTFVGYF 298 (521)
Q Consensus 233 ~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~------~~~i~~L~~~L~~L~~~~ 298 (521)
+|. +..+| . ++.+.+|++|++++|.++.+|.. ++.+++|++|++... +..++.++ +|+.|++..
T Consensus 85 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~ 157 (208)
T 2o6s_A 85 TNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHD 157 (208)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCS
T ss_pred CCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC-CccEEEecC
Confidence 986 77887 4 78999999999999999988775 677888888877543 12244555 555555443
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.34 E-value=2.4e-12 Score=125.49 Aligned_cols=123 Identities=17% Similarity=0.040 Sum_probs=53.2
Q ss_pred CccEEEcccCcCCCCCchhHh-hCCCCCcEEEccCCCCCc-cC----ccccCCcccceeecccCCCCCccC--CccCCCC
Q 041519 177 ILSTLLLQHNKYLQRIPECFF-VHMHGLKVLNLCHTSIEV-LP----NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLA 248 (521)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~-lp----~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~ 248 (521)
+|+.|++++|......|..++ +.+++|++|++++|.+.. .| ..+..+++|++|++++|. +..+| .++.+.+
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCC
Confidence 355555555442222333222 444555555555554442 11 122334455555555543 33332 3445555
Q ss_pred CCEEEeeCCcCcc---cCc--cccCCCCCcccccccc-----h---H-HHHhhHhcccceEEEeccc
Q 041519 249 LQYLDLEGTWIEE---VPE--GMEMLENLSHLSLFMA-----A---E-EAARLSDRLDTFVGYFSTL 301 (521)
Q Consensus 249 L~~L~l~~~~l~~---lp~--~i~~l~~L~~L~~~~~-----~---~-~i~~L~~~L~~L~~~~~~~ 301 (521)
|++|++++|.+.. ++. .++.+++|++|++..+ + . -++.++ +|++|+++.+.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-~L~~L~Ls~N~l 236 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-QPHSLDLSHNSL 236 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-CCSSEECTTSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-CCCEEECCCCCC
Confidence 5555555554321 211 1234444444444332 1 1 135566 777776655444
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=3.9e-12 Score=134.85 Aligned_cols=143 Identities=24% Similarity=0.305 Sum_probs=79.2
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceee
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLL 230 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 230 (521)
+++++.|++.++.+..++. + ..+++|+.|++++|. +..+++ +..+++|++|+|++|.+..+| .++.+.+|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l-~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-G-GGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCChH-H-ccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 3455666666666655542 2 255666666666665 555554 356666666666666655544 355666666666
Q ss_pred cccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhcccceEEEecccc
Q 041519 231 LRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLDTFVGYFSTLN 302 (521)
Q Consensus 231 l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~~L~~~~~~~~ 302 (521)
+++|. +..+|.+..+.+|+.|++++|.+..+ ..++.+.+|++|++..+ ...+..++ +|+.|++..+.+.
T Consensus 116 Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLT-KLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCC
T ss_pred ecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCC-CCCEEECcCCCCC
Confidence 66654 55555555666666666666655555 34555566666655433 11155555 5666655544443
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=7.6e-12 Score=112.81 Aligned_cols=121 Identities=26% Similarity=0.363 Sum_probs=94.9
Q ss_pred cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchh-HhhCCCCCcEEEccCCCCCcc-CccccCCcccceeecc
Q 041519 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPEC-FFVHMHGLKVLNLCHTSIEVL-PNSVSDLTNLRSLLLR 232 (521)
Q Consensus 155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~ 232 (521)
++++++++.+..+|..++ .++++|++++|. +..++.. +|+.+++|++|++++|.++.+ |..++.+.+|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 678888888888888765 378888888887 7777653 458888889999988888865 6778888888999988
Q ss_pred cCCCCCccC--CccCCCCCCEEEeeCCcCccc-CccccCCCCCcccccccc
Q 041519 233 WCGILKRVP--SLAKLLALQYLDLEGTWIEEV-PEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 233 ~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~ 280 (521)
+|. +..++ .+..+.+|++|++++|.++.+ |..++.+++|++|++...
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 876 67666 488888899999988888755 666777777777766543
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=1e-11 Score=130.35 Aligned_cols=98 Identities=20% Similarity=0.414 Sum_probs=49.6
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR 232 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 232 (521)
+++.|++.+|.+..+|..++ ++|++|++++|. +..+| +.+++|++|++++|.++.+|. ++. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~-l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNA-LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCC-Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 45555555555555554432 445555555554 44444 124555555555555555554 433 55555555
Q ss_pred cCCCCCccCCccCCCCCCEEEeeCCcCcccCc
Q 041519 233 WCGILKRVPSLAKLLALQYLDLEGTWIEEVPE 264 (521)
Q Consensus 233 ~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~ 264 (521)
+|. +..+|. .+.+|++|++++|.++.+|.
T Consensus 129 ~N~-l~~lp~--~l~~L~~L~Ls~N~l~~lp~ 157 (571)
T 3cvr_A 129 NNQ-LTMLPE--LPALLEYINADNNQLTMLPE 157 (571)
T ss_dssp SSC-CSCCCC--CCTTCCEEECCSSCCSCCCC
T ss_pred CCc-CCCCCC--cCccccEEeCCCCccCcCCC
Confidence 543 444544 34555555555555554444
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=111.45 Aligned_cols=120 Identities=28% Similarity=0.470 Sum_probs=96.2
Q ss_pred cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeeccc
Q 041519 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRW 233 (521)
Q Consensus 155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~ 233 (521)
+.+++.++.+..+|..++ +++++|++++|. +..+|.. |..+++|++|++++|.++.++ ..+..+.+|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~-i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQ-FTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSC-CCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCc-CchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 577888888888887765 578899999888 7788855 488999999999999888765 4678899999999998
Q ss_pred CCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccccc
Q 041519 234 CGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFMA 280 (521)
Q Consensus 234 ~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~ 280 (521)
|. +..+| .+..+.+|++|++++|.++.+|.+ +..+.+|++|++...
T Consensus 88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred Cc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 76 77776 588899999999999988888775 666777777766543
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=6.7e-13 Score=132.38 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=84.5
Q ss_pred ccCCccEEEeecCCCCCCCC----CcCCCCC-CccEEEcccCcCCCCCchhHhhCC-----CCCcEEEccCCCCCccC-c
Q 041519 150 WEENLERVSLMENDFEEIPS----NMSPHCE-ILSTLLLQHNKYLQRIPECFFVHM-----HGLKVLNLCHTSIEVLP-N 218 (521)
Q Consensus 150 ~~~~l~~L~l~~~~~~~l~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~l~~lp-~ 218 (521)
..+++++|++++|.+...+. ..+..++ +|++|++++|. +.......+..+ ++|++|++++|.+...+ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 34568888888888887765 3344666 78888888887 555543333443 88888888888877443 3
Q ss_pred c----ccCC-cccceeecccCCCCCccC--Cc----cC-CCCCCEEEeeCCcCc-----ccCccccCCC-CCcccccccc
Q 041519 219 S----VSDL-TNLRSLLLRWCGILKRVP--SL----AK-LLALQYLDLEGTWIE-----EVPEGMEMLE-NLSHLSLFMA 280 (521)
Q Consensus 219 ~----i~~L-~~L~~L~l~~~~~l~~lp--~~----~~-l~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~~~~~ 280 (521)
. +..+ .+|++|++++|. +...+ .+ .. ..+|++|++++|.+. .++..+..+. +|++|++..+
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 2 3344 788888888876 66554 22 23 358888888888776 3344444444 6666665543
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=4.9e-13 Score=142.45 Aligned_cols=209 Identities=16% Similarity=0.116 Sum_probs=126.8
Q ss_pred cCCccEEEeecCCC----CCCCCCc-----------CCCCCCccEEEcccCcCCCC-CchhHhhCCCCCcEEEccCC-CC
Q 041519 151 EENLERVSLMENDF----EEIPSNM-----------SPHCEILSTLLLQHNKYLQR-IPECFFVHMHGLKVLNLCHT-SI 213 (521)
Q Consensus 151 ~~~l~~L~l~~~~~----~~l~~~~-----------~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~~-~l 213 (521)
.++++.|++.++.. .-.|..+ ...+++|+.|++++|. +.. .+..+...+++|++|++++| .+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 45789999988652 1122222 2357899999999987 443 33444347899999999998 45
Q ss_pred Cc--cCccccCCcccceeecccCCCCCc-----cC-CccCCCCCCEEEeeCCc--Cc--ccCccccCCCCCcccccccc-
Q 041519 214 EV--LPNSVSDLTNLRSLLLRWCGILKR-----VP-SLAKLLALQYLDLEGTW--IE--EVPEGMEMLENLSHLSLFMA- 280 (521)
Q Consensus 214 ~~--lp~~i~~L~~L~~L~l~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~~~~~- 280 (521)
.. ++..+..+++|++|++++|. +.. ++ ....+.+|++|++++|. +. .++.-+..+++|++|++..+
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 53 55555589999999999986 433 34 34477899999999986 22 22332455789999988765
Q ss_pred -----hHHHHhhHhcccceEEEecc-------ccchhhhhhccCCCCCCcceeeeecCCCCCCcc--ccceeeeeeeeee
Q 041519 281 -----AEEAARLSDRLDTFVGYFST-------LNDFNIYVKSTDGRGSKNYCLLLSASGKRGFLE--VDKSVRLFACKIC 346 (521)
Q Consensus 281 -----~~~i~~L~~~L~~L~~~~~~-------~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~--~~~~~~L~~L~i~ 346 (521)
+..++.++ +|+.|++.... ....... ...+++|+.+..... ....... .....+|+.|.++
T Consensus 223 ~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~~---l~~~~~L~~Ls~~~~-~~~~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 223 PLEKLATLLQRAP-QLEELGTGGYTAEVRPDVYSGLSVA---LSGCKELRCLSGFWD-AVPAYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp CHHHHHHHHHHCT-TCSEEECSBCCCCCCHHHHHHHHHH---HHTCTTCCEEECCBT-CCGGGGGGGHHHHTTCCEEECT
T ss_pred cHHHHHHHHhcCC-cceEcccccccCccchhhHHHHHHH---HhcCCCcccccCCcc-cchhhHHHHHHhhCCCCEEEcc
Confidence 45677888 89998753221 1112222 233444544421110 0001111 1134567777776
Q ss_pred cCccc-------ccCccccceEEEecc
Q 041519 347 ETEET-------IVLPEDVQYLEMFGV 366 (521)
Q Consensus 347 ~~~~~-------~~~p~~L~~L~l~~~ 366 (521)
++... ....++|+.|.+.+|
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 66321 112457788887776
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=4.5e-12 Score=134.35 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=128.6
Q ss_pred cCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc
Q 041519 137 AGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL 216 (521)
Q Consensus 137 ~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l 216 (521)
.+..+..++ ....+++|+.|++++|.+..+++ +..+++|+.|++++|. +..++. +..+++|+.|+|++|.+..+
T Consensus 51 ~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 51 NNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLSS--LKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp TTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCTT--STTCTTCCEEECTTSCCCCC
T ss_pred cCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCChh--hccCCCCCEEEecCCCCCCC
Confidence 444555555 35667899999999999998876 4489999999999998 777764 58999999999999999887
Q ss_pred CccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc----hHHHHhhHhccc
Q 041519 217 PNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA----AEEAARLSDRLD 292 (521)
Q Consensus 217 p~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~----~~~i~~L~~~L~ 292 (521)
+ .++.+++|+.|++++|. +..++.++.+.+|+.|++++|.+..++. +..+.+|++|++..+ ...+..++ +|+
T Consensus 125 ~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~-~L~ 200 (605)
T 1m9s_A 125 N-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLK-NLD 200 (605)
T ss_dssp G-GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCT-TCS
T ss_pred c-cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHccCC-CCC
Confidence 5 48899999999999986 7777888999999999999999988766 889999999988765 34577888 888
Q ss_pred ceEEEecccc
Q 041519 293 TFVGYFSTLN 302 (521)
Q Consensus 293 ~L~~~~~~~~ 302 (521)
.|++..+.+.
T Consensus 201 ~L~L~~N~l~ 210 (605)
T 1m9s_A 201 VLELFSQECL 210 (605)
T ss_dssp EEECCSEEEE
T ss_pred EEEccCCcCc
Confidence 8887665543
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=1.8e-11 Score=107.66 Aligned_cols=131 Identities=24% Similarity=0.243 Sum_probs=109.7
Q ss_pred cEEEecCcccc--cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEcc
Q 041519 132 LFMVTAGLRLL--KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC 209 (521)
Q Consensus 132 ~~~~~~~~~~~--~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 209 (521)
..+...+..+. .+|.....++++++|++.+|.+..+ .. +..+++|++|++++|. +...++.++..+++|++|+++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECB
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEecc
Confidence 35555666676 7887777889999999999999988 44 4589999999999998 666344455789999999999
Q ss_pred CCCCCccC--ccccCCcccceeecccCCCCCccCC-----ccCCCCCCEEEeeCCcCcccCccc
Q 041519 210 HTSIEVLP--NSVSDLTNLRSLLLRWCGILKRVPS-----LAKLLALQYLDLEGTWIEEVPEGM 266 (521)
Q Consensus 210 ~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~~~l~~lp~~i 266 (521)
+|.++.+| ..++.+++|++|++++|. +..+|. +..+++|++|++++|.+.++|.+.
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 99999876 788999999999999986 666663 788999999999999998888753
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=4.3e-13 Score=134.99 Aligned_cols=90 Identities=18% Similarity=0.157 Sum_probs=45.4
Q ss_pred CCCcccccCCccEEEeecCCCCCC-----CCCcCCCCCCccEEEcccCcCCC----CCchhH------hhCCCCCcEEEc
Q 041519 144 FPGEQEWEENLERVSLMENDFEEI-----PSNMSPHCEILSTLLLQHNKYLQ----RIPECF------FVHMHGLKVLNL 208 (521)
Q Consensus 144 ~p~~~~~~~~l~~L~l~~~~~~~l-----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~------~~~l~~L~~L~L 208 (521)
++......+++++|++++|.+... +.. +..+++|++|++++|. +. .+|..+ +..+++|++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHT-TTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHH-HHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 333344445566666666655431 111 2245566666666543 22 223222 245566666666
Q ss_pred cCCCCCc-----cCccccCCcccceeecccCC
Q 041519 209 CHTSIEV-----LPNSVSDLTNLRSLLLRWCG 235 (521)
Q Consensus 209 ~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 235 (521)
++|.+.. +|..+..+++|++|++++|.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 6665553 45555555666666666654
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=3.8e-11 Score=106.65 Aligned_cols=120 Identities=28% Similarity=0.467 Sum_probs=67.4
Q ss_pred cEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeeccc
Q 041519 155 ERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLRW 233 (521)
Q Consensus 155 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~ 233 (521)
+.+++.++.+..+|..+. ++|+.|++++|. +..++...|+.+++|++|++++|.++.+|.. ++.+.+|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCCC---CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 455555555555554433 456666666655 5555555445566666666666666555433 35566666666666
Q ss_pred CCCCCccC-C-ccCCCCCCEEEeeCCcCcccCcc-ccCCCCCccccccc
Q 041519 234 CGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLFM 279 (521)
Q Consensus 234 ~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~ 279 (521)
|. +..+| . +..+.+|++|++++|.++.+|.. +..+++|++|++..
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 54 55554 2 45566666666666665555554 24555666655543
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.4e-11 Score=109.54 Aligned_cols=123 Identities=21% Similarity=0.314 Sum_probs=106.0
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|... .+++++|++.+|.++.+|..+ ..+++|++|++++|. +..++...|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc
Confidence 4456677788888643 468999999999999999554 589999999999998 888888777999999999999999
Q ss_pred CCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCc
Q 041519 213 IEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIE 260 (521)
Q Consensus 213 l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~ 260 (521)
++.+| ..+..+.+|++|++++|. +..+| .+..+.+|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 99776 468899999999999986 88888 4889999999999998654
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=9.9e-12 Score=123.79 Aligned_cols=146 Identities=27% Similarity=0.330 Sum_probs=120.8
Q ss_pred EEEecCcccccCCCccc--ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccC
Q 041519 133 FMVTAGLRLLKFPGEQE--WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCH 210 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~--~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 210 (521)
.+..+++.+..++.... .++++++|++++|.+..++...+..+++|+.|++++|. +..++...|..+++|++|+|++
T Consensus 43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCC
Confidence 44556666666665433 67899999999999999998877799999999999998 8888888789999999999999
Q ss_pred CCCCcc-CccccCCcccceeecccCCCCCccC-Cc----cCCCCCCEEEeeCCcCcccCc-cccCCCC--Ccccccccc
Q 041519 211 TSIEVL-PNSVSDLTNLRSLLLRWCGILKRVP-SL----AKLLALQYLDLEGTWIEEVPE-GMEMLEN--LSHLSLFMA 280 (521)
Q Consensus 211 ~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~----~~l~~L~~L~l~~~~l~~lp~-~i~~l~~--L~~L~~~~~ 280 (521)
|.+..+ |..+..+.+|++|++++|. +..+| .+ ..+.+|++|++++|.++.+|. .+..+.+ ++.|++...
T Consensus 122 N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 122 NHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 999966 6788999999999999986 88898 53 679999999999999999885 3666665 366776544
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=3.1e-11 Score=107.17 Aligned_cols=124 Identities=26% Similarity=0.379 Sum_probs=106.5
Q ss_pred EEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCC
Q 041519 134 MVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSI 213 (521)
Q Consensus 134 ~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 213 (521)
+...+..+..+|.. ..+++++|++.+|.+..++...+..+++|++|++++|. +..++...|+.+++|++|++++|.+
T Consensus 12 l~~~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 12 IRCNSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EECCSSCCSSCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCCccCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCc
Confidence 44556667777753 34699999999999999998887789999999999998 8888888779999999999999999
Q ss_pred CccCcc-ccCCcccceeecccCCCCCccC-C-ccCCCCCCEEEeeCCcCcc
Q 041519 214 EVLPNS-VSDLTNLRSLLLRWCGILKRVP-S-LAKLLALQYLDLEGTWIEE 261 (521)
Q Consensus 214 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~ 261 (521)
+.+|.. ++.+.+|++|++++|. +..+| . +..+.+|++|++++|.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 988764 6899999999999985 88888 4 6889999999999997653
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=6.3e-13 Score=133.79 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=77.5
Q ss_pred CCCCccEEEcccCcCCCCCch-h---HhhCCCCCcEEEccCCCCC----ccCccc-------cCCcccceeecccCCCCC
Q 041519 174 HCEILSTLLLQHNKYLQRIPE-C---FFVHMHGLKVLNLCHTSIE----VLPNSV-------SDLTNLRSLLLRWCGILK 238 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~-~---~~~~l~~L~~L~L~~~~l~----~lp~~i-------~~L~~L~~L~l~~~~~l~ 238 (521)
.+++|++|++++|. +..... . .+..+++|++|++++|.+. .+|..+ ..+++|++|++++|. +.
T Consensus 30 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG 107 (386)
T ss_dssp HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred cCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CC
Confidence 56777777777776 443221 1 1356777778877776443 334333 567777788877765 44
Q ss_pred c-----cC-CccCCCCCCEEEeeCCcCcc-----cCccccCC---------CCCcccccccc-------h---HHHHhhH
Q 041519 239 R-----VP-SLAKLLALQYLDLEGTWIEE-----VPEGMEML---------ENLSHLSLFMA-------A---EEAARLS 288 (521)
Q Consensus 239 ~-----lp-~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l---------~~L~~L~~~~~-------~---~~i~~L~ 288 (521)
. +| .+..+++|++|++++|.+.. ++..+..+ ++|++|++..+ + ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 3 55 56777777888887776652 23333333 67777776543 1 3455667
Q ss_pred hcccceEEEecccc
Q 041519 289 DRLDTFVGYFSTLN 302 (521)
Q Consensus 289 ~~L~~L~~~~~~~~ 302 (521)
+|++|++..+.+.
T Consensus 188 -~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 188 -LLHTVKMVQNGIR 200 (386)
T ss_dssp -TCCEEECCSSCCC
T ss_pred -CcCEEECcCCCCC
Confidence 7777777666554
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=7.5e-12 Score=111.13 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=96.3
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccc-cCCccccee
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSV-SDLTNLRSL 229 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L 229 (521)
..++++|++++|.+..++. +....++|++|++++|. +..++ . ++.+++|++|++++|.++.+|..+ +.+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4578899999998888854 44334489999999887 66663 3 588889999999999888887655 788899999
Q ss_pred ecccCCCCCccC---CccCCCCCCEEEeeCCcCcccCcc----ccCCCCCcccccccc
Q 041519 230 LLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEVPEG----MEMLENLSHLSLFMA 280 (521)
Q Consensus 230 ~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~~~~~ 280 (521)
++++|. +..+| .++.+++|++|++++|.+..+|.. ++.+++|+.|++..+
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 999875 77776 377888999999999988877764 666666666665544
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=3.1e-11 Score=114.58 Aligned_cols=138 Identities=22% Similarity=0.254 Sum_probs=119.0
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..++ ....++++++|++++|.+..++. +..+++|+.|++++|. +..++.. .. ++|++|++++|.
T Consensus 45 ~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~--~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 45 NFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-LKNLNGI--PS-ACLSRLFLDNNE 117 (263)
T ss_dssp EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC-CSCCTTC--CC-SSCCEEECCSSC
T ss_pred EEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc-cCCcCcc--cc-CcccEEEccCCc
Confidence 4555666777777 56677899999999999999887 4589999999999998 8888763 34 999999999999
Q ss_pred CCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 280 (521)
++.++ .++.+.+|++|++++|. +..+|.++.+.+|++|++++|.+..+ ..+..+++|++|++...
T Consensus 118 l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 118 LRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred cCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 99876 48999999999999986 88888889999999999999999888 56888999999988764
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=3.7e-11 Score=108.25 Aligned_cols=124 Identities=23% Similarity=0.262 Sum_probs=104.2
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCC-cCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSN-MSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
.+...+..+..+|... ..++++|++.+|.+..++.. .+..+++|++|++++|. +..+++..|+.+++|++|++++|
T Consensus 12 ~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC
Confidence 3455667778888744 34899999999999999875 45689999999999998 77776555699999999999999
Q ss_pred CCCccCc-cccCCcccceeecccCCCCCcc-C-CccCCCCCCEEEeeCCcCc
Q 041519 212 SIEVLPN-SVSDLTNLRSLLLRWCGILKRV-P-SLAKLLALQYLDLEGTWIE 260 (521)
Q Consensus 212 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p-~~~~l~~L~~L~l~~~~l~ 260 (521)
.++.++. .++.+++|++|++++|. +..+ | .+..+.+|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9997754 58899999999999987 6655 6 7999999999999999765
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=2e-11 Score=128.49 Aligned_cols=107 Identities=22% Similarity=0.338 Sum_probs=67.7
Q ss_pred CccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecc
Q 041519 153 NLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLR 232 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 232 (521)
.++.|++++|.++.+|. + ..+++|++|++++|. +..+|..+ +.+++|++|+|++|.++.+| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~-~~l~~L~~L~Ls~N~-l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNR-LRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC-G-GGGTTCCEEECCSSC-CCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC-c-cccccCcEeecCccc-ccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 45666666666666664 3 366666666666666 55666554 66666666666666666666 56666666666666
Q ss_pred cCCCCCcc--C-CccCCCCCCEEEeeCCcCcccCcc
Q 041519 233 WCGILKRV--P-SLAKLLALQYLDLEGTWIEEVPEG 265 (521)
Q Consensus 233 ~~~~l~~l--p-~~~~l~~L~~L~l~~~~l~~lp~~ 265 (521)
+|. +..+ | .++.+++|++|++++|.++.+|..
T Consensus 517 ~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 517 NNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp SSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 654 5554 5 566666666666666666655543
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=4.1e-12 Score=126.65 Aligned_cols=122 Identities=19% Similarity=0.147 Sum_probs=85.5
Q ss_pred EEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCch----hHhhCCC-CCcEEEccCCCCCcc-CccccCC-----cc
Q 041519 157 VSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPE----CFFVHMH-GLKVLNLCHTSIEVL-PNSVSDL-----TN 225 (521)
Q Consensus 157 L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~l~~l-p~~i~~L-----~~ 225 (521)
..+..+.+....+.+....++|++|++++|. +...+. ..+..++ +|++|++++|.+... +..+..+ .+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4556666665444444455669999999998 777765 5567888 899999999998854 5556654 89
Q ss_pred cceeecccCCCCCccC--C----ccCC-CCCCEEEeeCCcCcccCcc-----ccC-CCCCcccccccc
Q 041519 226 LRSLLLRWCGILKRVP--S----LAKL-LALQYLDLEGTWIEEVPEG-----MEM-LENLSHLSLFMA 280 (521)
Q Consensus 226 L~~L~l~~~~~l~~lp--~----~~~l-~~L~~L~l~~~~l~~lp~~-----i~~-l~~L~~L~~~~~ 280 (521)
|++|++++|. +...+ . +..+ .+|++|++++|.++..+.. +.. .++|++|++..+
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 9999999986 66554 3 3444 8999999999988765542 222 246666665543
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=1.7e-11 Score=133.08 Aligned_cols=106 Identities=24% Similarity=0.275 Sum_probs=65.8
Q ss_pred CCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccC-CccCCCCCC
Q 041519 172 SPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVP-SLAKLLALQ 250 (521)
Q Consensus 172 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~l~~L~ 250 (521)
+..+++|++|++++|. +..+|..+ ..+++|++|+|++|.++.+|.+++.|.+|++|+|++|. +..+| .++.|.+|+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCC-CCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC
Confidence 3456666666666666 55666555 35666666666666666666666666666666666654 55666 566666666
Q ss_pred EEEeeCCcCcccCccccCCCCCcccccccc
Q 041519 251 YLDLEGTWIEEVPEGMEMLENLSHLSLFMA 280 (521)
Q Consensus 251 ~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 280 (521)
+|++++|.++.+|.+++.|++|++|++...
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 666666666666666666666666666543
No 129
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.20 E-value=8.8e-12 Score=121.44 Aligned_cols=195 Identities=14% Similarity=0.029 Sum_probs=135.8
Q ss_pred HHHHHHHhccCCcEEEecCcccc-cCCCcc--cccCCccEEEeecCCCCCCCCC----cCCCCCCccEEEcccCcCCCCC
Q 041519 120 RDMALRITSKSPLFMVTAGLRLL-KFPGEQ--EWEENLERVSLMENDFEEIPSN----MSPHCEILSTLLLQHNKYLQRI 192 (521)
Q Consensus 120 ~dl~~~i~~~~~~~~~~~~~~~~-~~p~~~--~~~~~l~~L~l~~~~~~~l~~~----~~~~l~~L~~L~l~~~~~~~~~ 192 (521)
..+........-..+...++.+. ..|... ...+++++|++++|.+...... .+..+++|++|++++|. +..+
T Consensus 82 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~ 160 (310)
T 4glp_A 82 VGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAF 160 (310)
T ss_dssp HHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCC
T ss_pred HHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchh
Confidence 33333333333444444555554 344444 6678999999999998863321 11258899999999998 7777
Q ss_pred chhHhhCCCCCcEEEccCCCCCc---cC--ccccCCcccceeecccCCCCCccC-C----ccCCCCCCEEEeeCCcCccc
Q 041519 193 PECFFVHMHGLKVLNLCHTSIEV---LP--NSVSDLTNLRSLLLRWCGILKRVP-S----LAKLLALQYLDLEGTWIEEV 262 (521)
Q Consensus 193 ~~~~~~~l~~L~~L~L~~~~l~~---lp--~~i~~L~~L~~L~l~~~~~l~~lp-~----~~~l~~L~~L~l~~~~l~~l 262 (521)
++..|+.+++|++|++++|.+.. ++ ..++.+++|++|++++|. +..+| . ++.+.+|++|++++|.+..+
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 76666899999999999998653 33 334688999999999986 77665 2 46889999999999988876
Q ss_pred -CccccCC---CCCcccccccc-----hHHHHhhHhcccceEEEeccccchhhhhhccCCCCCCcceeee
Q 041519 263 -PEGMEML---ENLSHLSLFMA-----AEEAARLSDRLDTFVGYFSTLNDFNIYVKSTDGRGSKNYCLLL 323 (521)
Q Consensus 263 -p~~i~~l---~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 323 (521)
|..++.+ ++|++|++... +..+. + +|+.|++..+.+..+.. ...+.+|+.+.+.
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~-~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~ 302 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A-KLRVLDLSSNRLNRAPQ----PDELPEVDNLTLD 302 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S-CCSCEECCSCCCCSCCC----TTSCCCCSCEECS
T ss_pred chhhHHhccCcCcCCEEECCCCCCCchhhhhc--C-CCCEEECCCCcCCCCch----hhhCCCccEEECc
Confidence 7777777 58888887654 33332 6 89999988777665422 2345666666654
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=4.4e-11 Score=105.85 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=92.8
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeecc
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLR 232 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~ 232 (521)
.+.++++++.+..+|..+. ++|++|++++|. +..+++..|+++++|++|+|++|.++.+|.. +..+.+|++|+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP---TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCcC---CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 4688999999999998765 789999999998 8888766679999999999999999988876 4789999999999
Q ss_pred cCCCCCccC-C-ccCCCCCCEEEeeCCcCcccCccc
Q 041519 233 WCGILKRVP-S-LAKLLALQYLDLEGTWIEEVPEGM 266 (521)
Q Consensus 233 ~~~~l~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~i 266 (521)
+|. +..+| . +..+.+|++|++++|.+...+..+
T Consensus 90 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 90 DNH-LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp SSC-CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred CCc-cceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 986 88888 4 889999999999999877665544
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=1.5e-11 Score=133.52 Aligned_cols=119 Identities=21% Similarity=0.327 Sum_probs=103.7
Q ss_pred CCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCC
Q 041519 144 FPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDL 223 (521)
Q Consensus 144 ~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L 223 (521)
.+.....+..++.|++++|.+..+|..++ .+++|++|++++|. +..+|..+ +.+++|++|+|++|.++.+|.+++.|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~-l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNS-LTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSC-CSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCc-CcccChhh-hCCCCCCEEeCcCCcCCccChhhcCC
Confidence 34455667899999999999999999988 89999999999998 77999876 99999999999999999999999999
Q ss_pred cccceeecccCCCCCccC-CccCCCCCCEEEeeCCcCcc-cCccc
Q 041519 224 TNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGTWIEE-VPEGM 266 (521)
Q Consensus 224 ~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~-lp~~i 266 (521)
.+|++|+|++|. +..+| .++++.+|++|++++|.+.. +|..+
T Consensus 293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 999999999985 88999 89999999999999998874 44444
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3.1e-11 Score=107.09 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=106.5
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...++.+..++......+++++|++++|.+..+ .. +..+++|++|++++|. +..+|+.+|+.+++|++|++++|.
T Consensus 23 ~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG-FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS 99 (176)
T ss_dssp EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CC-CCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC
T ss_pred EEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cc-cccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCc
Confidence 44556667777766555556999999999999988 34 4589999999999998 888888877999999999999999
Q ss_pred CCccCc--cccCCcccceeecccCCCCCccC-C----ccCCCCCCEEEeeCCcCcc
Q 041519 213 IEVLPN--SVSDLTNLRSLLLRWCGILKRVP-S----LAKLLALQYLDLEGTWIEE 261 (521)
Q Consensus 213 l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp-~----~~~l~~L~~L~l~~~~l~~ 261 (521)
+..+|. .++.+++|++|++++|. +..+| . ++.+++|++|++++|...+
T Consensus 100 i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 100 LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 998887 78999999999999987 77888 4 8899999999999986554
No 133
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.17 E-value=1.3e-10 Score=121.88 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=50.6
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 231 (521)
+++++|++++|.+..+| . .+++|++|++++|. +..+|. + .. +|++|++++|.++.+|. .+.+|++|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~-l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALISLP-E---LPASLEYLDACDNR-LSTLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSC-CSCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcccc-c---ccCCCCEEEccCCC-CCCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeC
Confidence 34555555555555544 1 23455555555554 444444 2 22 45555555555444444 3444555555
Q ss_pred ccCCCCCccCCccCCCCCCEEEeeCCcCcccCccccCCCCCcccccc
Q 041519 232 RWCGILKRVPSLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLF 278 (521)
Q Consensus 232 ~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~ 278 (521)
++|. +..+|. .+.+|++|++++|.++.+|. +. ++|++|++.
T Consensus 148 s~N~-l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 148 DNNQ-LTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVS 188 (571)
T ss_dssp CSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECC
T ss_pred CCCc-cCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECc
Confidence 5443 444443 23444444444444444444 33 444444443
No 134
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.16 E-value=3.6e-11 Score=127.93 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHcCCchhHHHHHHHhcCCCCChHHHHHHHHHHhccccCC-----CchhhHHHHHHHHhHhcCCchhHHH
Q 041519 9 LNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSL-----NDVDTKVFGRLEFSYHRLKDEKLQQ 83 (521)
Q Consensus 9 ~l~~i~~~i~~kc~GlPLAi~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~-----~~~~~~i~~~L~lSY~~L~~~~lk~ 83 (521)
...+.+++|+++|+|+|||++.+|+.|+.+ ...|+.+++.+....... ......+..++..||+.|| .+.|.
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~-~~~~~ 381 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKD 381 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC-TTTHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCC-HHHHH
Confidence 345678999999999999999999999874 347999999886543221 1123589999999999999 89999
Q ss_pred HHHHHHH----------------------HhHHHHHHHHccccccccCC--CccccchHHHHHHHHHh
Q 041519 84 CFLYCAL----------------------GHTILNRLVNCCLLESAKDG--SCVKMHDLIRDMALRIT 127 (521)
Q Consensus 84 cfl~~s~----------------------g~~~~~~L~~~~l~~~~~~~--~~~~mhdli~dl~~~i~ 127 (521)
||++||+ ++.++++|+++|||+....+ ..|+||+++++++....
T Consensus 382 ~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 382 YYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9999998 45789999999999865543 47999999999998773
No 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.15 E-value=2.8e-11 Score=131.07 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=77.4
Q ss_pred cCCchhHHHHHHHhcCCC-CChHHHHHHHHHHhccccCCCchhhHHHHHHHHhHhcCCchhH-HHHHHHHHH--------
Q 041519 21 CGCLPLAIVTVAASMSGE-EEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKL-QQCFLYCAL-------- 90 (521)
Q Consensus 21 c~GlPLAi~~lg~~L~~k-~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~l-k~cfl~~s~-------- 90 (521)
|+|+||||+++|+.|+.+ .+.++|+.+ ..+.+..+|++||+.|| .+. |+||+|||+
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp-~eelK~cFL~LAIFPed~~I~ 388 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIP 388 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSC-TTHHHHHHHHTTSSCTTSCEE
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCC-HHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999986 367889753 12689999999999999 788 999999999
Q ss_pred ---------------HhHHHHHHHHccccccccCCCccccchHHHHHHH
Q 041519 91 ---------------GHTILNRLVNCCLLESAKDGSCVKMHDLIRDMAL 124 (521)
Q Consensus 91 ---------------g~~~~~~L~~~~l~~~~~~~~~~~mhdli~dl~~ 124 (521)
++.+|++|+++|||+.......|+|||++++++.
T Consensus 389 ~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 4578999999999998643468999999999663
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.9e-10 Score=101.36 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=88.9
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCcc-ccCCcccceeecc
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNS-VSDLTNLRSLLLR 232 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~ 232 (521)
.+.++++++.++.+|..+. ++|++|++++|. +..+++..|+.+++|++|++++|.++.+|.. +..+.+|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~---~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP---TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC---CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 5788999999999998764 789999999998 8888766678999999999999999988765 5789999999999
Q ss_pred cCCCCCccC--CccCCCCCCEEEeeCCcCcccC
Q 041519 233 WCGILKRVP--SLAKLLALQYLDLEGTWIEEVP 263 (521)
Q Consensus 233 ~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp 263 (521)
+|. +..+| .+..+.+|++|++++|.+.-.+
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 986 78887 4889999999999999766443
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.2e-10 Score=122.56 Aligned_cols=98 Identities=23% Similarity=0.247 Sum_probs=56.5
Q ss_pred ccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeecccCCCCCccCCccCCCCCCEEEeeCC
Q 041519 178 LSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLLRWCGILKRVPSLAKLLALQYLDLEGT 257 (521)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~ 257 (521)
|++|++++|. +..+|. ++.+++|++|++++|.++.+|..++.+.+|++|++++|. +..+|.++.+.+|++|++++|
T Consensus 443 L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred ceEEEecCCC-CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCC
Confidence 5555666555 555554 355666666666666655566556666666666666553 555555555666666666666
Q ss_pred cCccc--CccccCCCCCccccccc
Q 041519 258 WIEEV--PEGMEMLENLSHLSLFM 279 (521)
Q Consensus 258 ~l~~l--p~~i~~l~~L~~L~~~~ 279 (521)
.++.+ |..++.+++|++|++..
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred CCCCCCCcHHHhcCCCCCEEEecC
Confidence 55555 55555555555555543
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=1.7e-10 Score=99.18 Aligned_cols=119 Identities=28% Similarity=0.309 Sum_probs=99.1
Q ss_pred EEEecCcccc--cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCC-CchhHhhCCCCCcEEEcc
Q 041519 133 FMVTAGLRLL--KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQR-IPECFFVHMHGLKVLNLC 209 (521)
Q Consensus 133 ~~~~~~~~~~--~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~L~ 209 (521)
.+...+..+. .+|.....++++++|++++|.+..+ .. +..+++|++|++++|. +.. +|. .++.+++|++|+++
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~ls 96 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDNR-VSGGLEV-LAEKCPNLTHLNLS 96 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSSC-CCSCTHH-HHHHCTTCCEEECT
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCCc-ccchHHH-HhhhCCCCCEEECC
Confidence 4455666666 7787777889999999999999988 33 4589999999999998 666 555 45889999999999
Q ss_pred CCCCCccC--ccccCCcccceeecccCCCCCccCC-----ccCCCCCCEEEeeC
Q 041519 210 HTSIEVLP--NSVSDLTNLRSLLLRWCGILKRVPS-----LAKLLALQYLDLEG 256 (521)
Q Consensus 210 ~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~ 256 (521)
+|.++.+| ..++.+++|++|++++|. +..+|. ++.+++|++|++++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 99999765 789999999999999986 777764 78899999998763
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=3.1e-12 Score=115.98 Aligned_cols=122 Identities=22% Similarity=0.317 Sum_probs=72.8
Q ss_pred ccEEEeecC--CCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519 154 LERVSLMEN--DFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 154 l~~L~l~~~--~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 231 (521)
++...+.+. .++.+|..+. .+++|++|++++|. +..+| . +..+++|++|++++|.+..+|..++.+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~-l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNN-IEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEE-ESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCC-Ccccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 344444333 3334443333 56667777776665 55565 3 36666777777777666666665666666777777
Q ss_pred ccCCCCCccCCccCCCCCCEEEeeCCcCcccCc--cccCCCCCcccccccc
Q 041519 232 RWCGILKRVPSLAKLLALQYLDLEGTWIEEVPE--GMEMLENLSHLSLFMA 280 (521)
Q Consensus 232 ~~~~~l~~lp~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~ 280 (521)
++|. +..+|.++.+.+|++|++++|.+..+|. .+..+++|++|++...
T Consensus 101 ~~N~-l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 101 SYNQ-IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEE-CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCCc-CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 7664 5556656666667777777666665543 4556666666665544
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=1.2e-09 Score=96.51 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=91.2
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|... .+++++|++++|.+..+++..+..+++|++|++++|. +..+|..+|..+++|++|+|++|.
T Consensus 16 ~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc
Confidence 4556677788888754 3799999999999999988777799999999999998 899999888999999999999999
Q ss_pred CCccCcc-ccCCcccceeecccCCCCCccC
Q 041519 213 IEVLPNS-VSDLTNLRSLLLRWCGILKRVP 241 (521)
Q Consensus 213 l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp 241 (521)
++.+|.. +..+.+|++|++++|. +...+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 9988875 8899999999999986 55444
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=4.1e-12 Score=115.16 Aligned_cols=116 Identities=23% Similarity=0.228 Sum_probs=98.9
Q ss_pred cccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccc
Q 041519 141 LLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSV 220 (521)
Q Consensus 141 ~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i 220 (521)
+..+|.....++++++|++++|.+..+| .+ ..+++|++|++++|. +..+|..+ ..+++|++|++++|.++.+| .+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~-l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNL-IKKIENLD-AVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEE-ECSCSSHH-HHHHHCSEEEEEEEECCCHH-HH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCC-cccccchh-hcCCcCCEEECcCCcCCcCC-cc
Confidence 3444446677889999999999999988 44 489999999999998 78888754 77899999999999999887 58
Q ss_pred cCCcccceeecccCCCCCccC---CccCCCCCCEEEeeCCcCccc
Q 041519 221 SDLTNLRSLLLRWCGILKRVP---SLAKLLALQYLDLEGTWIEEV 262 (521)
Q Consensus 221 ~~L~~L~~L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~l~~l 262 (521)
+.+++|++|++++|. +..+| .+..+.+|++|++++|.+...
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 899999999999986 77665 488999999999999977644
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=2.2e-09 Score=94.48 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=88.1
Q ss_pred EEEecCcccccCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 133 FMVTAGLRLLKFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 133 ~~~~~~~~~~~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
.+...+..+..+|... .+++++|++++|.+..+++..+..+++|++|++++|+ +..+|...|..+++|++|+|++|.
T Consensus 13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc
Confidence 3455677788888654 4789999999999999988777799999999999998 889998888999999999999999
Q ss_pred CCccCc-cccCCcccceeecccCC
Q 041519 213 IEVLPN-SVSDLTNLRSLLLRWCG 235 (521)
Q Consensus 213 l~~lp~-~i~~L~~L~~L~l~~~~ 235 (521)
++.+|. .+..+.+|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 998876 48899999999999986
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=2.6e-08 Score=98.28 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=81.3
Q ss_pred cEEEeecC-CCCCCCCCcCCCCCCccEEEccc-CcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeec
Q 041519 155 ERVSLMEN-DFEEIPSNMSPHCEILSTLLLQH-NKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLL 231 (521)
Q Consensus 155 ~~L~l~~~-~~~~l~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l 231 (521)
..++..++ .+..+|. + ..+++|+.|++++ |. +..++...|+++++|++|+|++|.++.+| ..|++|.+|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~-l-~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-L-PGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT-S-CSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC-C-CCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 34577777 7888888 4 4788899999986 76 88888776789999999999999988665 46788999999999
Q ss_pred ccCCCCCccC-CccCCCCCCEEEeeCCcCcc
Q 041519 232 RWCGILKRVP-SLAKLLALQYLDLEGTWIEE 261 (521)
Q Consensus 232 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~ 261 (521)
++|. +..+| .+....+|+.|++.+|.+.-
T Consensus 88 ~~N~-l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNA-LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSSC-CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCc-cceeCHHHcccCCceEEEeeCCCccC
Confidence 9976 78887 54444449999999886653
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=6e-08 Score=95.66 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=86.5
Q ss_pred EecCc-ccccCCCcccccCCccEEEeec-CCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC
Q 041519 135 VTAGL-RLLKFPGEQEWEENLERVSLME-NDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS 212 (521)
Q Consensus 135 ~~~~~-~~~~~p~~~~~~~~l~~L~l~~-~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 212 (521)
...+. .+..+|. .....+++.|++++ |.+..++...+..+++|+.|+|++|. +..+++..|+++++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc
Confidence 44555 7888998 77788999999996 99999998877799999999999998 888888778999999999999999
Q ss_pred CCccCccccCCcccceeecccCC
Q 041519 213 IEVLPNSVSDLTNLRSLLLRWCG 235 (521)
Q Consensus 213 l~~lp~~i~~L~~L~~L~l~~~~ 235 (521)
++.+|..+.....|++|++++|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 99998766654459999999986
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=6.9e-08 Score=94.54 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=43.1
Q ss_pred cCCccEEEeecCCCC--------------------CCCCCcCCC--------CCCccEEEcccCcCCCCCchhHhhCCCC
Q 041519 151 EENLERVSLMENDFE--------------------EIPSNMSPH--------CEILSTLLLQHNKYLQRIPECFFVHMHG 202 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~--------------------~l~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 202 (521)
+++++.|++++|.+. .+|...|.. |++|+.+.+.. . +..+++..|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcc
Confidence 346666776666665 455566666 77777777776 3 77777777777777
Q ss_pred CcEEEccCCCCCcc
Q 041519 203 LKVLNLCHTSIEVL 216 (521)
Q Consensus 203 L~~L~L~~~~l~~l 216 (521)
|+.+++++|.+..+
T Consensus 126 L~~l~l~~n~i~~i 139 (329)
T 3sb4_A 126 LKICQIRKKTAPNL 139 (329)
T ss_dssp CCEEEBCCSSCCEE
T ss_pred cceEEcCCCCcccc
Confidence 88777777765544
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.50 E-value=3.8e-06 Score=84.32 Aligned_cols=119 Identities=15% Similarity=0.213 Sum_probs=71.6
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceee
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLL 230 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~ 230 (521)
..++.+.+.. .++.++...|..+ +|+.+.+..+ +..++...|.++ +|+.+.+.. .++.++ .++..+.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4555555543 4566666666554 5777776554 666666656663 577777765 455554 4556777777777
Q ss_pred cccCCCCCccC-CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccccc
Q 041519 231 LRWCGILKRVP-SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSLF 278 (521)
Q Consensus 231 l~~~~~l~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~ 278 (521)
+..+. +..+| ......+|+.+.+..+ ++.++.. +.++.+|+.+.+.
T Consensus 187 l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 187 LSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred cCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 77653 67776 4333567777777643 5555443 5556666666543
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.4e-06 Score=85.22 Aligned_cols=91 Identities=16% Similarity=0.132 Sum_probs=69.0
Q ss_pred CCCCcEEEccCCCCCccCc-cccCCcccceeecccCCCCCccC--CccCCCCCC-EEEeeCCcCcccCc-cccCCCCCcc
Q 041519 200 MHGLKVLNLCHTSIEVLPN-SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQ-YLDLEGTWIEEVPE-GMEMLENLSH 274 (521)
Q Consensus 200 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~-~L~l~~~~l~~lp~-~i~~l~~L~~ 274 (521)
+++|+.+++++|.++.+|. +|..+.+|+.+++.++ +..++ .|..+.+|+ .+++.+ +++.++. .+..+.+|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 7789999999888888875 5678889999999875 78887 588899998 999888 6777764 4778888888
Q ss_pred cccccc------hHHHHhhHhcccce
Q 041519 275 LSLFMA------AEEAARLSDRLDTF 294 (521)
Q Consensus 275 L~~~~~------~~~i~~L~~~L~~L 294 (521)
+.+... ...+..++ +|+.+
T Consensus 302 l~l~~n~i~~I~~~aF~~~~-~L~~l 326 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGV-PSKLI 326 (329)
T ss_dssp EEECSSCCCEECTTTTCTTC-CCCEE
T ss_pred EEeCCCccCccchhhhcCCc-chhhh
Confidence 876322 23455566 66655
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=5.8e-08 Score=96.60 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=79.6
Q ss_pred CccEEEeecCCCCCCC-----CCcCCCCCCccEEEcccCcCCCCC-chhHhhCCCCCcEEEccCCCCCcc-Cccc-----
Q 041519 153 NLERVSLMENDFEEIP-----SNMSPHCEILSTLLLQHNKYLQRI-PECFFVHMHGLKVLNLCHTSIEVL-PNSV----- 220 (521)
Q Consensus 153 ~l~~L~l~~~~~~~l~-----~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~l-p~~i----- 220 (521)
.++.|++++|.+.... ..+....++|+.|++++|. +... ...+...+++|+.|+|++|.+... ...+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5666777766665321 1111123567777777765 3321 222333455677777777766521 1112
Q ss_pred cCCcccceeecccCCCCCc-----cC-CccCCCCCCEEEeeCCcCcc-----cCccccCCCCCcccccccc---------
Q 041519 221 SDLTNLRSLLLRWCGILKR-----VP-SLAKLLALQYLDLEGTWIEE-----VPEGMEMLENLSHLSLFMA--------- 280 (521)
Q Consensus 221 ~~L~~L~~L~l~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~~~~~--------- 280 (521)
....+|++|++++|. +.. ++ .+....+|++|++++|.+.. ++..+...++|++|++..+
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 134567777777764 433 23 34556677777777776552 2344555566666666544
Q ss_pred -hHHHHhhHhcccceEEEeccccc
Q 041519 281 -AEEAARLSDRLDTFVGYFSTLND 303 (521)
Q Consensus 281 -~~~i~~L~~~L~~L~~~~~~~~~ 303 (521)
...+...+ +|++|++..+.+..
T Consensus 231 l~~~L~~~~-~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHP-SLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCS-SCCEEECTTSSCCH
T ss_pred HHHHHHhCC-CCCEEeccCCCCCH
Confidence 22334456 77777776665543
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.08 E-value=3.9e-05 Score=76.89 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=141.7
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccCccccCCcccceeec
Q 041519 152 ENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLPNSVSDLTNLRSLLL 231 (521)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 231 (521)
.+++.+.+..+ +..++...|..+ +|+.+.+.. .+..++...|.++.+|+.+++++|.++.+|.......+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 47888888765 788888877664 699999876 37888887789999999999999888888876666788999998
Q ss_pred ccCCCCCccC--CccCCCCCCEEEeeCCcCcccCccccCCCCCcccccccc-----hHHHHhhHhcccceEEEecccc--
Q 041519 232 RWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEGMEMLENLSHLSLFMA-----AEEAARLSDRLDTFVGYFSTLN-- 302 (521)
Q Consensus 232 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~-----~~~i~~L~~~L~~L~~~~~~~~-- 302 (521)
.. .+..++ .+..+.+|+.+++..+ ++.++.....-.+|+.+.+..- ...+..++ +|+.+.+..+...
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCP-ELAEVTTYGSTFNDD 286 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCT-TCCEEEEESSCCCCC
T ss_pred CC--chheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCC-CCCEEEeCCccccCC
Confidence 75 378887 5888889999998774 5666554322266777766432 34466777 8888877543322
Q ss_pred ---chhhhhhccCCCCCCcceeeeecCCCCCCccccceeeeeeeeeecCcc-----cccCccccceEEEecccCcccccc
Q 041519 303 ---DFNIYVKSTDGRGSKNYCLLLSASGKRGFLEVDKSVRLFACKICETEE-----TIVLPEDVQYLEMFGVDDVASLND 374 (521)
Q Consensus 303 ---~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~-----~~~~p~~L~~L~l~~~~~l~~l~~ 374 (521)
.+.. .....+.+|+.+.+..+-..........+.+|+.+.+...-. ...-. .|+.+.+.+..-
T Consensus 287 ~~~~I~~--~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~------ 357 (401)
T 4fdw_A 287 PEAMIHP--YCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP------ 357 (401)
T ss_dssp TTCEECT--TTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSC------
T ss_pred cccEECH--HHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCC------
Confidence 1111 112234455555443211111222233445677777654311 11113 677887766421
Q ss_pred cccCCCcccccccchhhcc-CCCcEEEEec
Q 041519 375 VLPREQGLNLFSLRLLPAL-QNLEVLAVGY 403 (521)
Q Consensus 375 ~~~~~~~l~~~p~~~l~~L-~~L~~L~L~~ 403 (521)
..++...+..+ .+++.|++..
T Consensus 358 --------~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 358 --------PQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp --------CBCCCSSCCCSCTTCCEEEECG
T ss_pred --------cccccccccCCCCCccEEEeCH
Confidence 12222233445 3788999964
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.96 E-value=0.00026 Score=70.80 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=27.8
Q ss_pred cCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEcc
Q 041519 151 EENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLC 209 (521)
Q Consensus 151 ~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 209 (521)
+.+|+.+.+. +.++.++...|..|++|+.+.+..+ +..++...|.++..|+.+.+.
T Consensus 70 c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 70 CRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp CTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhccc
Confidence 3455555554 2345555555555555555555432 444444444555555544443
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.88 E-value=2e-06 Score=85.47 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=87.4
Q ss_pred CCCccEEEcccCcCCCCCchhHhh-----CCCCCcEEEccCCCCCc-cCccc-cCCcccceeecccCCCCCccC--Cc--
Q 041519 175 CEILSTLLLQHNKYLQRIPECFFV-----HMHGLKVLNLCHTSIEV-LPNSV-SDLTNLRSLLLRWCGILKRVP--SL-- 243 (521)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~L~~~~l~~-lp~~i-~~L~~L~~L~l~~~~~l~~lp--~~-- 243 (521)
++.|+.|++++|. +.......+. ..++|+.|+|++|.+.. -...+ ..+.+|++|++++|. +.... .+
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence 3679999999998 6554433223 23799999999999872 22223 356789999999985 65443 23
Q ss_pred ---cCCCCCCEEEeeCCcCcc-----cCccccCCCCCcccccccc----------hHHHHhhHhcccceEEEeccccc
Q 041519 244 ---AKLLALQYLDLEGTWIEE-----VPEGMEMLENLSHLSLFMA----------AEEAARLSDRLDTFVGYFSTLND 303 (521)
Q Consensus 244 ---~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~~~~~----------~~~i~~L~~~L~~L~~~~~~~~~ 303 (521)
....+|++|++++|.++. ++..+...++|++|++..+ ...+...+ +|++|++..+.+.+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCH
Confidence 346889999999998764 4555677888888888765 22334556 77788777666543
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=1.4e-05 Score=69.58 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=67.0
Q ss_pred CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCC-CCc-cCccccCC----cccceeecccCCCCCc
Q 041519 166 EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTS-IEV-LPNSVSDL----TNLRSLLLRWCGILKR 239 (521)
Q Consensus 166 ~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~-lp~~i~~L----~~L~~L~l~~~~~l~~ 239 (521)
.+|.... .-.+|+.|++++|. ++...-..+..+++|+.|+|++|. ++. --..++.+ .+|++|++++|..+++
T Consensus 52 ~LP~~~~-~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 52 HLPTGPL-DKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GSCCCST-TCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cCCcccC-CCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 3454432 22478999999987 655443345789999999999985 662 22335554 3699999999988876
Q ss_pred cC--CccCCCCCCEEEeeCC-cCcc
Q 041519 240 VP--SLAKLLALQYLDLEGT-WIEE 261 (521)
Q Consensus 240 lp--~~~~l~~L~~L~l~~~-~l~~ 261 (521)
-- .+.++++|++|++++| .++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 54 5778899999999998 5654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=7.2e-05 Score=65.03 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=71.2
Q ss_pred cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCC----CCCcEEEccCCC-CCc-c
Q 041519 143 KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHM----HGLKVLNLCHTS-IEV-L 216 (521)
Q Consensus 143 ~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~L~~~~-l~~-l 216 (521)
.+|......-.+++|+++++.++...-.....|++|+.|++++|..++.-.-..+..+ ++|++|++++|. ++. -
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 3454332334799999999987754333335899999999999986665443334554 479999999985 772 2
Q ss_pred CccccCCcccceeecccCCCCCcc
Q 041519 217 PNSVSDLTNLRSLLLRWCGILKRV 240 (521)
Q Consensus 217 p~~i~~L~~L~~L~l~~~~~l~~l 240 (521)
-..+..+++|++|++++|..++..
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHhcCCCCCEEECCCCCCCCch
Confidence 245678999999999999877753
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.65 E-value=0.0011 Score=66.07 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=78.0
Q ss_pred cccCCCc-ccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCcc-Cc
Q 041519 141 LLKFPGE-QEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVL-PN 218 (521)
Q Consensus 141 ~~~~p~~-~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~ 218 (521)
+..++.. ...+.+|+.+.+..+ ++.++...|..|.+|+.+.+..+ +..+....|.++..+....... +..+ ..
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~ 156 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFKEITIPEG--VTVIGDE 156 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCSEEECCTT--CCEECTT
T ss_pred ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccccccccCcc--ccccchh
Confidence 4444432 345688999988654 77888888888999998777643 5556655566665444333222 2222 24
Q ss_pred cccCCcccceeecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCcccc
Q 041519 219 SVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLS 276 (521)
Q Consensus 219 ~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 276 (521)
++.++.+|+.+.+..+ +..++ .+..+.+|+.+.+..+ ++.++.. +.....|+.+.
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 5667778888887652 55665 4677777887777654 4444332 44444555443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.46 E-value=0.00015 Score=67.86 Aligned_cols=82 Identities=26% Similarity=0.199 Sum_probs=60.1
Q ss_pred hCCCCCcEEEccCCCCCcc---CccccCCcccceeecccCCCCCccCCccCCC--CCCEEEeeCCcCc-ccCc-------
Q 041519 198 VHMHGLKVLNLCHTSIEVL---PNSVSDLTNLRSLLLRWCGILKRVPSLAKLL--ALQYLDLEGTWIE-EVPE------- 264 (521)
Q Consensus 198 ~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~~~l~--~L~~L~l~~~~l~-~lp~------- 264 (521)
.++++|+.|+|++|.+..+ |..++.+++|++|+|++|. +..+..+..+. +|+.|++++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5688899999999987754 4556688899999999876 77665444444 8999999999765 3442
Q ss_pred cccCCCCCcccccccc
Q 041519 265 GMEMLENLSHLSLFMA 280 (521)
Q Consensus 265 ~i~~l~~L~~L~~~~~ 280 (521)
.+..+.+|+.|+...+
T Consensus 246 il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 246 IRERFPKLLRLDGHEL 261 (267)
T ss_dssp HHHHCTTCCEESSCBC
T ss_pred HHHHCcccCeECCcCC
Confidence 3567888888876554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=9.9e-05 Score=69.09 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=47.9
Q ss_pred CCCCccEEEcccCcCCCCCch--hHhhCCCCCcEEEccCCCCCccCccccCCc--ccceeecccCCCCCccC--------
Q 041519 174 HCEILSTLLLQHNKYLQRIPE--CFFVHMHGLKVLNLCHTSIEVLPNSVSDLT--NLRSLLLRWCGILKRVP-------- 241 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~lp-------- 241 (521)
.+++|++|++++|. +..++. ..+..+++|++|+|++|.+..+ ..+..+. +|++|++++|.....+|
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45677777777776 555442 3346777777777777777654 2244444 77777777776333333
Q ss_pred CccCCCCCCEEE
Q 041519 242 SLAKLLALQYLD 253 (521)
Q Consensus 242 ~~~~l~~L~~L~ 253 (521)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 145667777765
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.35 E-value=0.00013 Score=71.86 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC-ccCcccc--CCcccceeecccCC-------CCCccC--
Q 041519 174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE-VLPNSVS--DLTNLRSLLLRWCG-------ILKRVP-- 241 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~--~L~~L~~L~l~~~~-------~l~~lp-- 241 (521)
.+++|+.|.+.++... .++. + .+++|+.|++..+.+. .....++ .+++|++|+|+.+. .+..+.
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 4456666666655312 2332 1 2556666666655544 1112222 45666666654211 011111
Q ss_pred -CccCCCCCCEEEeeCCcCcc-cCccc---cCCCCCcccccccc----------hHHHHhhHhcccceEEEecccc
Q 041519 242 -SLAKLLALQYLDLEGTWIEE-VPEGM---EMLENLSHLSLFMA----------AEEAARLSDRLDTFVGYFSTLN 302 (521)
Q Consensus 242 -~~~~l~~L~~L~l~~~~l~~-lp~~i---~~l~~L~~L~~~~~----------~~~i~~L~~~L~~L~~~~~~~~ 302 (521)
....+++|++|++.+|.+.. .+..+ ..+++|++|++... ...+..++ +|+.|+++.+.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-HLKFINMKYNYLS 320 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-TCSEEECCSBBCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-cceEEECCCCcCC
Confidence 11245666666666665431 11111 23556666665433 12234566 7777777655443
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.34 E-value=0.00016 Score=71.22 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=6.9
Q ss_pred CCCCCEEEeeCCcCc
Q 041519 246 LLALQYLDLEGTWIE 260 (521)
Q Consensus 246 l~~L~~L~l~~~~l~ 260 (521)
+++|++|+++.|.+.
T Consensus 278 ~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 278 LPQLETMDISAGVLT 292 (362)
T ss_dssp GGGCSEEECCSSCCB
T ss_pred CCCCCEEECCCCCCC
Confidence 344555555444433
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.27 E-value=0.0068 Score=60.33 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=49.9
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCccEEEcccCc--CCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceee
Q 041519 154 LERVSLMENDFEEIPSNMSPHCEILSTLLLQHNK--YLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLL 230 (521)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~ 230 (521)
++.+.+.. .++.+....|..|.+|+.+.+..+. .+..+....|..+..|+.+.+..+ +..++ ..+..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 55555543 2555555555566666666655431 244455555555555555554433 33332 2344555566655
Q ss_pred cccCCCCCccC--CccCCCCCCEEEeeC
Q 041519 231 LRWCGILKRVP--SLAKLLALQYLDLEG 256 (521)
Q Consensus 231 l~~~~~l~~lp--~~~~l~~L~~L~l~~ 256 (521)
+.. .+..++ .+....+|+.+.+..
T Consensus 144 lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 144 IPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred ccc--eeeeecccceecccccccccccc
Confidence 543 244444 355555666555543
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.21 E-value=0.00016 Score=63.89 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=40.1
Q ss_pred CCCCccEEEcccC-cCCCC-----CchhHhhCCCCCcEEEccCCCCCc-----cCccccCCcccceeecccCCCCCc---
Q 041519 174 HCEILSTLLLQHN-KYLQR-----IPECFFVHMHGLKVLNLCHTSIEV-----LPNSVSDLTNLRSLLLRWCGILKR--- 239 (521)
Q Consensus 174 ~l~~L~~L~l~~~-~~~~~-----~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~--- 239 (521)
..+.|++|++++| . +.. +... +...++|++|+|++|.+.. +...+....+|++|++++|. +..
T Consensus 34 ~~~~L~~L~L~~n~~-i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 34 NDPDLEEVNLNNIMN-IPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp TCTTCCEEECTTCTT-CCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred cCCCCCEEEecCCCC-CCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 3455555555555 3 322 1111 2344556666666655541 22333334456666666553 332
Q ss_pred --cC-CccCCCCCCEEEe--eCCcCc
Q 041519 240 --VP-SLAKLLALQYLDL--EGTWIE 260 (521)
Q Consensus 240 --lp-~~~~l~~L~~L~l--~~~~l~ 260 (521)
+. .+....+|++|++ ++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 22 3444555666666 455443
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.14 E-value=0.00014 Score=64.39 Aligned_cols=107 Identities=17% Similarity=0.101 Sum_probs=78.4
Q ss_pred cCCccEEEeecC-CCCC-----CCCCcCCCCCCccEEEcccCcCCCCCch----hHhhCCCCCcEEEccCCCCCc-----
Q 041519 151 EENLERVSLMEN-DFEE-----IPSNMSPHCEILSTLLLQHNKYLQRIPE----CFFVHMHGLKVLNLCHTSIEV----- 215 (521)
Q Consensus 151 ~~~l~~L~l~~~-~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~L~~~~l~~----- 215 (521)
.+.+++|++.+| .+.. +...+ ...++|++|++++|. +..-.. ..+...+.|++|+|++|.+..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 358999999998 7753 22222 356899999999998 554221 123567899999999999873
Q ss_pred cCccccCCcccceeec--ccCCCCCc-----cC-CccCCCCCCEEEeeCCcCc
Q 041519 216 LPNSVSDLTNLRSLLL--RWCGILKR-----VP-SLAKLLALQYLDLEGTWIE 260 (521)
Q Consensus 216 lp~~i~~L~~L~~L~l--~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~l~ 260 (521)
+...+....+|++|++ ++|. +.. +. .+....+|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5667777889999999 7765 554 33 3556688999999998654
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.09 E-value=0.013 Score=58.23 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=78.4
Q ss_pred ccccCCccEEEeecC---CCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCC
Q 041519 148 QEWEENLERVSLMEN---DFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDL 223 (521)
Q Consensus 148 ~~~~~~l~~L~l~~~---~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L 223 (521)
...+.+|+.+.+..+ .++.++...|..|.+|+.+.+..+ +..++...|..+.+|+.+.+..+ +..++ ..+...
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c 159 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC 159 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence 345688999998765 377788888888999998887654 77788877899999999999754 44443 456678
Q ss_pred cccceeecccCCCCCccC-CccCCCCCCEEEeeCC
Q 041519 224 TNLRSLLLRWCGILKRVP-SLAKLLALQYLDLEGT 257 (521)
Q Consensus 224 ~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~ 257 (521)
..|+.+.+.. .+..+. ....-.+|+.+.+...
T Consensus 160 ~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 160 YSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp TTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT
T ss_pred cccccccccc--eeeEeccccccccceeEEEECCc
Confidence 8899999876 377776 3333467888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.34 E-value=0.0068 Score=49.89 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=40.5
Q ss_pred cEEEeecCCCC--CCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCC
Q 041519 155 ERVSLMENDFE--EIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIE 214 (521)
Q Consensus 155 ~~L~l~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 214 (521)
..++.+++.++ .+|..+. .+|+.|+|++|. +..++..+|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP---VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC---TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC---cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 35666667776 7776654 467788888887 77787777777888888888877654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.48 E-value=0.081 Score=52.00 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=46.3
Q ss_pred CCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccceeecccCCCCCccC--CccCCCCCC
Q 041519 174 HCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRSLLLRWCGILKRVP--SLAKLLALQ 250 (521)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp--~~~~l~~L~ 250 (521)
.+.+++.+.+..+ +..+....|.++..|+.+.+..+ ++.+. ..+.+..+|+.+.+.. .+..++ .+..+.+|+
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCC
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccc
Confidence 4455555555432 34444444455555555555433 33332 2333445555555543 244444 345555555
Q ss_pred EEEeeCCcCcccCcc-ccCCCCCccccc
Q 041519 251 YLDLEGTWIEEVPEG-MEMLENLSHLSL 277 (521)
Q Consensus 251 ~L~l~~~~l~~lp~~-i~~l~~L~~L~~ 277 (521)
.+.+.++.++.++.. +.++.+|+.+.+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccceehhhhhcCCCCCCEEEc
Confidence 555555555544432 444445554443
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.36 E-value=0.063 Score=52.81 Aligned_cols=122 Identities=15% Similarity=0.268 Sum_probs=85.3
Q ss_pred ccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCCCCCccC-ccccCCcccce
Q 041519 150 WEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHTSIEVLP-NSVSDLTNLRS 228 (521)
Q Consensus 150 ~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~ 228 (521)
....++.+.+..+ +..++...+..+..|+.+.+..+ +..+....|.++..|+.+.+..+ +..++ ..+..+.+|+.
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 3456677666543 55666666668888888888654 66777777788888888888644 55554 34567888888
Q ss_pred eecccCCCCCccC--CccCCCCCCEEEeeCCcCcccCcc-ccCCCCCccccc
Q 041519 229 LLLRWCGILKRVP--SLAKLLALQYLDLEGTWIEEVPEG-MEMLENLSHLSL 277 (521)
Q Consensus 229 L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~ 277 (521)
+.+.++ .++.++ .+.++.+|+.+.+..+ ++.++.. +.++.+|+.+.+
T Consensus 291 i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 291 VVMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 888764 377776 5788888888888653 6666543 666777777755
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.41 E-value=0.11 Score=42.43 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=44.9
Q ss_pred EEEecCcccc--cCCCcccccCCccEEEeecCCCCCCCCCcCCCCCCccEEEcccCcC
Q 041519 133 FMVTAGLRLL--KFPGEQEWEENLERVSLMENDFEEIPSNMSPHCEILSTLLLQHNKY 188 (521)
Q Consensus 133 ~~~~~~~~~~--~~p~~~~~~~~l~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 188 (521)
.+..++..+. .+|.. ...++++|++++|.++.++...+..+++|++|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455666776 77753 456899999999999999999998999999999999973
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=74.03 E-value=2.7 Score=36.78 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=26.8
Q ss_pred hCCCCCcEEEccCCCCC-----ccCccccCCcccceeecccCCCCCcc-----C-CccCCCCCCEEEeeCC
Q 041519 198 VHMHGLKVLNLCHTSIE-----VLPNSVSDLTNLRSLLLRWCGILKRV-----P-SLAKLLALQYLDLEGT 257 (521)
Q Consensus 198 ~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~l-----p-~~~~l~~L~~L~l~~~ 257 (521)
..-+.|+.|+|++|.+. .+-..+..=..|++|+|++|. +..- - .+..-..|+.|+++++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34455666666665544 112222223345555555543 3321 1 1333344666666543
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=70.61 E-value=11 Score=35.61 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCchhHHHHHHHhcC
Q 041519 12 EIINEVVEECGCLPLAIVTVAASMS 36 (521)
Q Consensus 12 ~i~~~i~~kc~GlPLAi~~lg~~L~ 36 (521)
+...+|++.++|.|+++..++..+.
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4677899999999999999987653
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=66.73 E-value=2.5 Score=37.03 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=65.7
Q ss_pred CCccEEEeecC-CCCC-----CCCCcCCCCCCccEEEcccCcCCCCCch----hHhhCCCCCcEEEccCCCCC-----cc
Q 041519 152 ENLERVSLMEN-DFEE-----IPSNMSPHCEILSTLLLQHNKYLQRIPE----CFFVHMHGLKVLNLCHTSIE-----VL 216 (521)
Q Consensus 152 ~~l~~L~l~~~-~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~L~~~~l~-----~l 216 (521)
+.+++|++.++ .+.. +-..+. .-+.|+.|++++|. +..... ..+..-+.|+.|+|++|.|. .+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 57899999875 6542 112222 44789999999998 543221 22356688999999999877 23
Q ss_pred CccccCCcccceeecccCCC--CCc-----cC-CccCCCCCCEEEeeCC
Q 041519 217 PNSVSDLTNLRSLLLRWCGI--LKR-----VP-SLAKLLALQYLDLEGT 257 (521)
Q Consensus 217 p~~i~~L~~L~~L~l~~~~~--l~~-----lp-~~~~l~~L~~L~l~~~ 257 (521)
-..+..=..|++|++++|.. +.. +- .+..-..|..|+++.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 44555556799999986531 221 22 2334456777776554
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.72 E-value=10 Score=28.88 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCCCCCCCCcCCCCCCccEEEcccCcCCCCCchhHhhCCCCCcEEEccCC
Q 041519 162 NDFEEIPSNMSPHCEILSTLLLQHNKYLQRIPECFFVHMHGLKVLNLCHT 211 (521)
Q Consensus 162 ~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 211 (521)
..++.+....|..|.+|+.+.+..+ +..+....|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 3455666666667777777777654 56666666677777777666543
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=59.29 E-value=21 Score=33.76 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.2
Q ss_pred HHHHHHcCCchhHHHHHHHhcCC
Q 041519 15 NEVVEECGCLPLAIVTVAASMSG 37 (521)
Q Consensus 15 ~~i~~kc~GlPLAi~~lg~~L~~ 37 (521)
..|+++|+|.|+++..++..+..
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHcc
Confidence 68999999999999999987653
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=52.77 E-value=21 Score=33.31 Aligned_cols=40 Identities=13% Similarity=-0.094 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCchhHHHHHHHhcCC--------CCChHHHHHHHHHH
Q 041519 12 EIINEVVEECGCLPLAIVTVAASMSG--------EEEIYEWQNALNEL 51 (521)
Q Consensus 12 ~i~~~i~~kc~GlPLAi~~lg~~L~~--------k~~~~~W~~~l~~l 51 (521)
+....+++++.|.|-.+..+...... ..+.+....++..+
T Consensus 191 ~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 191 EAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 45677888899999887766554321 13455666666654
No 173
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=20.68 E-value=45 Score=17.81 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=14.8
Q ss_pred HcCCchhHHHHHHHhcCC
Q 041519 20 ECGCLPLAIVTVAASMSG 37 (521)
Q Consensus 20 kc~GlPLAi~~lg~~L~~ 37 (521)
|-.-+|||..+.++.+..
T Consensus 7 krrklplavav~agv~~a 24 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCTHHHHHHHHTTCC
T ss_pred ccccCchHHHHHHHHhHh
Confidence 445799999999998875
Done!