BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041521
(524 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 14/194 (7%)
Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
+F+++P DE ++ +K+EF G++G+P V G + H+ I AP SY N+ K
Sbjct: 117 QFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYVNR-------K 169
Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
+S+ V D +G V WPGS+ D VL++S+L + + G+ KD W++G+S +
Sbjct: 170 GLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSFF 229
Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPV- 458
L W+M P T ++ +N +V + F L R+ CL ++ LQ P
Sbjct: 230 LRTWLMTPLHIPE-TPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEK 287
Query: 459 ---VLGACCVLHNI 469
++ ACCVLHNI
Sbjct: 288 SSHIILACCVLHNI 301
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 14/194 (7%)
Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
+F+ +P DE ++ +K+EF G++GIP V G + H+ I AP SY N+ K
Sbjct: 117 QFIHFPADEASVQALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYVNR-------K 169
Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
+S+ V D +G V WPGS+ D VL++S+L + + G+ K+ W++G+S +
Sbjct: 170 GLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFF 229
Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPV- 458
L W+M P T ++ +N +V + F L R+ CL ++ LQ P
Sbjct: 230 LRTWLMTPLHIPE-TPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEK 287
Query: 459 ---VLGACCVLHNI 469
++ ACCVLHNI
Sbjct: 288 SSHIILACCVLHNI 301
>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 14/194 (7%)
Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
+F+ +P DE ++ +K+EF G++G+P V G H+ I AP SY N+ K
Sbjct: 117 QFIHFPVDEAAVQSLKDEFYGLAGMPGVIGVADCIHVAIKAPNAEDLSYVNR-------K 169
Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
+S+ V D +G V WPGS+ D VL+RS+L + + G+ KD W++G+S +
Sbjct: 170 GLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLTSQFETGMPKDSWLLGDSSFF 229
Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPV- 458
L W++ P T ++ +N +V + L R+ CL ++ LQ P
Sbjct: 230 LRSWLLTPLPIPE-TAAEYRYNRAHSATHSVIERTLQTLCCRFRCLDG-SKGALQYSPEK 287
Query: 459 ---VLGACCVLHNI 469
++ ACCVLHNI
Sbjct: 288 CSHIILACCVLHNI 301
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 101/194 (52%), Gaps = 14/194 (7%)
Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
+F+ +P DE ++ +K+EF G++G+P V G++ H+ I AP SY N+ K
Sbjct: 117 QFIHFPADEAAIQSLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAEDLSYVNR-------K 169
Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
+S+ V D +G V WPGS+ D VL++S+L + + G+ KD W++G+S +
Sbjct: 170 GLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSFF 229
Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLPV- 458
L W++ P T ++ +N +V + L R+ CL ++ LQ P
Sbjct: 230 LHTWLLTPLHIPE-TPAEYRYNRAHSATHSVIEKTLRTLCCRFRCLDG-SKGALQYSPEK 287
Query: 459 ---VLGACCVLHNI 469
++ ACCVLHNI
Sbjct: 288 SSHIILACCVLHNI 301
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 21/277 (7%)
Query: 201 FRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGI 260
F + + E L+ +++++ R P Q +A + +G + G+
Sbjct: 39 FGFPREFIYYLVELLKDSLLRRTQRSRAISPDVQILAALGF-YTSGSFQSKMGDAIGISQ 97
Query: 261 STCHKLVLEVCSAIKTVLMPKFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPII 319
++ + V V A+ P+F+ + DE +Q K+EF I+GIPNV G + HI I
Sbjct: 98 ASMSRCVSNVTKAL-IEKAPEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCAHIAIK 156
Query: 320 APKISVASYFNKRHTERNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERS--- 376
AP +SY NK K +SI Q V D +G+ WPGS+ D V ++S
Sbjct: 157 APNADDSSYVNK-------KGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVA 209
Query: 377 ALFQRADRGLLKDVWIVGNSGYPLMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFA 436
LF+ + + W++G++ YPL W+M P Q + + +N + F
Sbjct: 210 KLFEEQEND--DEGWLLGDNRYPLKKWLMTP-VQSPESPADYRYNLAHTTTHEIVDRTFR 266
Query: 437 RLKGRWACLQKRTEVKLQDLPV----VLGACCVLHNI 469
++ R+ CL + LQ P ++ ACCVLHNI
Sbjct: 267 AIQTRFRCLDG-AKGYLQYSPEKCSHIIQACCVLHNI 302
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 16/195 (8%)
Query: 281 KFLQWP-DELKMKQIKEEFQGISGIPNVGGSMYTTHIPIIAPKISVASYFNKRHTERNQK 339
+F+ +P DE ++ +K+EF ++G+P V G + T + I AP SY N R
Sbjct: 117 QFISFPRDERSVQGLKDEFYNLAGVPGVLGVVDCTQVNIKAPNSEDLSYVNSRGL----- 171
Query: 340 TSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQRADRGLLKDVWIVGNSGYP 399
+S+ V D +G GSM D+ VL +S L + + K W++ ++ +
Sbjct: 172 --HSLNCLLVCDARGSLLWAETSRLGSMQDNAVLHQSELSGLFETKMHKQGWLLADNAFI 229
Query: 400 LMDWVMVPYTQKNLTWTQHAFNEKIGDIQAVAKDAFARLKGRWACLQKRTEVKLQDLP-- 457
L W+M P Q + + + +N +V + L+ R+ CL + LQ P
Sbjct: 230 LRPWLMTP-VQIPESPSDYRYNMAHTATHSVMERTQRSLRLRFRCLDG-SRATLQYSPEK 287
Query: 458 ---VVLGACCVLHNI 469
+VL ACC+LHNI
Sbjct: 288 SAQIVL-ACCILHNI 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,223,542
Number of Sequences: 539616
Number of extensions: 8248974
Number of successful extensions: 124127
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 42295
Number of HSP's gapped (non-prelim): 39691
length of query: 524
length of database: 191,569,459
effective HSP length: 122
effective length of query: 402
effective length of database: 125,736,307
effective search space: 50545995414
effective search space used: 50545995414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)