Query 041521
Match_columns 524
No_of_seqs 259 out of 1690
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 93.1 0.02 6.9E-07 40.2 0.5 41 228-269 4-44 (51)
2 2p7v_B Sigma-70, RNA polymeras 91.4 0.082 2.8E-06 40.6 2.1 49 229-277 5-56 (68)
3 2glo_A Brinker CG9653-PA; prot 90.5 0.06 2.1E-06 40.4 0.5 43 227-270 3-49 (59)
4 2w7n_A TRFB transcriptional re 90.2 0.096 3.3E-06 44.3 1.5 59 202-274 4-62 (101)
5 2jn6_A Protein CGL2762, transp 90.2 0.087 3E-06 43.3 1.2 44 227-270 3-47 (97)
6 2o8x_A Probable RNA polymerase 89.7 0.17 5.8E-06 38.5 2.5 49 229-278 15-63 (70)
7 1ku3_A Sigma factor SIGA; heli 89.2 0.15 5.2E-06 39.6 1.9 48 228-275 9-59 (73)
8 1jko_C HIN recombinase, DNA-in 88.7 0.091 3.1E-06 37.2 0.2 40 229-269 5-44 (52)
9 1tty_A Sigma-A, RNA polymerase 88.6 0.12 4.1E-06 41.8 0.9 50 229-278 18-70 (87)
10 1wy3_A Villin; structural prot 87.0 0.31 1.1E-05 33.2 2.0 21 192-212 1-21 (35)
11 3hug_A RNA polymerase sigma fa 86.4 0.25 8.4E-06 40.2 1.6 49 229-278 37-85 (92)
12 1und_A Advillin, P92; actin bi 85.6 0.4 1.4E-05 33.0 2.0 21 192-212 3-23 (37)
13 1jhg_A Trp operon repressor; c 85.5 0.16 5.4E-06 43.0 -0.0 43 229-272 35-83 (101)
14 3t72_q RNA polymerase sigma fa 84.1 0.27 9.2E-06 41.3 0.8 49 229-277 19-70 (99)
15 1u78_A TC3 transposase, transp 82.0 1.4 4.8E-05 37.8 4.7 79 191-269 22-102 (141)
16 2elh_A CG11849-PA, LD40883P; s 81.5 0.38 1.3E-05 38.9 0.7 44 227-271 20-63 (87)
17 1fse_A GERE; helix-turn-helix 80.8 0.62 2.1E-05 35.6 1.7 46 228-275 10-55 (74)
18 1u78_A TC3 transposase, transp 78.9 0.53 1.8E-05 40.5 0.8 42 228-270 5-46 (141)
19 1hlv_A CENP-B, major centromer 78.6 0.58 2E-05 40.2 1.0 46 227-272 5-51 (131)
20 3c57_A Two component transcrip 78.5 0.68 2.3E-05 38.0 1.3 46 229-276 27-72 (95)
21 1rp3_A RNA polymerase sigma fa 78.2 0.8 2.7E-05 42.7 1.9 49 229-278 187-235 (239)
22 1iuf_A Centromere ABP1 protein 78.1 0.83 2.8E-05 40.5 1.8 46 226-271 8-61 (144)
23 2jrt_A Uncharacterized protein 77.5 0.8 2.7E-05 38.1 1.4 45 227-271 30-74 (95)
24 1je8_A Nitrate/nitrite respons 77.1 0.68 2.3E-05 36.9 0.9 46 228-275 20-65 (82)
25 1s7o_A Hypothetical UPF0122 pr 76.9 0.73 2.5E-05 39.4 1.1 49 229-278 22-70 (113)
26 2x48_A CAG38821; archeal virus 76.5 0.42 1.4E-05 34.7 -0.5 26 243-268 28-53 (55)
27 1pdn_C Protein (PRD paired); p 75.9 0.75 2.6E-05 38.5 0.9 43 228-271 16-58 (128)
28 1k78_A Paired box protein PAX5 75.5 0.81 2.8E-05 40.2 1.0 44 228-272 31-74 (149)
29 1j1v_A Chromosomal replication 75.0 1.1 3.7E-05 37.2 1.6 49 227-275 27-76 (94)
30 1qzp_A Dematin; villin headpie 74.7 1.3 4.6E-05 34.5 1.9 21 192-212 34-54 (68)
31 1x3u_A Transcriptional regulat 74.4 0.85 2.9E-05 35.4 0.8 43 230-274 17-59 (79)
32 2lfw_A PHYR sigma-like domain; 74.4 1.7 5.9E-05 38.5 2.9 50 228-278 92-141 (157)
33 2q1z_A RPOE, ECF SIGE; ECF sig 74.0 1.5 5.2E-05 39.3 2.5 47 229-276 135-181 (184)
34 2rnj_A Response regulator prot 73.5 0.98 3.4E-05 36.5 1.0 45 229-275 29-73 (91)
35 1or7_A Sigma-24, RNA polymeras 73.2 1.3 4.5E-05 40.0 1.9 49 229-278 140-188 (194)
36 2jpc_A SSRB; DNA binding prote 72.8 1.1 3.8E-05 32.9 1.0 33 243-275 10-42 (61)
37 1p4w_A RCSB; solution structur 71.8 2.2 7.7E-05 35.4 2.8 61 208-275 18-78 (99)
38 1xsv_A Hypothetical UPF0122 pr 71.7 1.5 5E-05 37.4 1.7 49 229-278 25-73 (113)
39 1yu8_X Villin; alpha helix, 3- 71.2 1.5 5.2E-05 34.1 1.5 21 192-212 33-53 (67)
40 2rn7_A IS629 ORFA; helix, all 70.7 0.58 2E-05 39.0 -1.1 43 228-270 5-54 (108)
41 3mzy_A RNA polymerase sigma-H 69.7 1.4 4.8E-05 38.3 1.2 48 229-278 109-156 (164)
42 2k6m_S Supervillin; SVHP, HP, 69.1 1.5 5.3E-05 34.1 1.1 20 192-211 33-52 (67)
43 2k27_A Paired box protein PAX- 68.9 1.1 3.6E-05 40.0 0.1 42 228-270 24-65 (159)
44 3ulq_B Transcriptional regulat 67.0 1.7 5.8E-05 35.4 1.0 45 228-274 28-72 (90)
45 1l0o_C Sigma factor; bergerat 65.5 1.3 4.4E-05 41.2 0.0 43 229-272 198-240 (243)
46 1ujs_A Actin-binding LIM prote 62.5 2 6.9E-05 35.2 0.6 22 192-213 48-69 (88)
47 1zyb_A Transcription regulator 60.0 4.5 0.00015 37.6 2.7 80 192-271 122-211 (232)
48 3ech_A MEXR, multidrug resista 59.4 4.8 0.00016 34.4 2.6 43 229-272 34-77 (142)
49 3frw_A Putative Trp repressor 55.3 2.6 8.8E-05 35.8 0.1 28 241-268 53-80 (107)
50 3pvv_A Chromosomal replication 54.9 3.5 0.00012 34.5 0.9 49 228-276 32-80 (101)
51 3dv8_A Transcriptional regulat 54.6 2.9 0.0001 38.1 0.4 102 192-294 106-217 (220)
52 3iyd_F RNA polymerase sigma fa 53.7 6.2 0.00021 43.3 2.8 50 228-277 549-601 (613)
53 3kor_A Possible Trp repressor; 53.3 2.3 7.7E-05 36.9 -0.6 32 237-268 66-97 (119)
54 2a6h_F RNA polymerase sigma fa 52.6 5.6 0.00019 41.6 2.2 47 229-275 360-409 (423)
55 1r1u_A CZRA, repressor protein 52.5 7 0.00024 32.1 2.4 37 234-272 29-65 (106)
56 3fx3_A Cyclic nucleotide-bindi 52.3 2.9 0.0001 38.8 -0.1 103 192-295 112-226 (237)
57 2d1h_A ST1889, 109AA long hypo 52.2 2.5 8.5E-05 34.2 -0.5 29 244-272 34-62 (109)
58 4dyq_A Gene 1 protein; GP1, oc 52.1 3.7 0.00013 36.1 0.6 33 237-269 19-52 (140)
59 1uxc_A FRUR (1-57), fructose r 49.3 2.7 9.2E-05 32.2 -0.7 21 248-268 2-22 (65)
60 1ku9_A Hypothetical protein MJ 49.2 3.3 0.00011 35.4 -0.2 41 232-272 27-67 (152)
61 3la7_A Global nitrogen regulat 49.2 2.6 8.8E-05 39.7 -1.0 81 192-272 123-219 (243)
62 3r0a_A Putative transcriptiona 48.8 3.3 0.00011 35.4 -0.3 26 247-272 43-68 (123)
63 1oyi_A Double-stranded RNA-bin 47.3 4.1 0.00014 32.9 0.1 38 231-270 17-54 (82)
64 2heo_A Z-DNA binding protein 1 47.1 3.8 0.00013 31.3 -0.1 26 246-271 25-50 (67)
65 3e6c_C CPRK, cyclic nucleotide 47.0 2.5 8.4E-05 39.9 -1.6 105 192-297 107-228 (250)
66 2lkp_A Transcriptional regulat 46.6 6.4 0.00022 32.9 1.2 28 245-272 44-71 (119)
67 4ev0_A Transcription regulator 46.2 3.7 0.00013 37.3 -0.4 104 192-296 100-213 (216)
68 2l8n_A Transcriptional repress 46.1 3.2 0.00011 31.9 -0.7 22 247-268 10-31 (67)
69 1y0u_A Arsenical resistance op 45.9 4.4 0.00015 32.7 0.0 29 244-272 41-69 (96)
70 1l9z_H Sigma factor SIGA; heli 45.8 6.6 0.00023 41.4 1.4 47 229-275 375-424 (438)
71 2fmy_A COOA, carbon monoxide o 45.3 3.4 0.00012 37.9 -0.8 102 192-294 97-216 (220)
72 3k0l_A Repressor protein; heli 45.1 11 0.00039 32.8 2.7 43 229-272 43-86 (162)
73 2gxg_A 146AA long hypothetical 44.9 12 0.00042 31.6 2.8 42 229-272 34-76 (146)
74 1tbx_A ORF F-93, hypothetical 44.5 8.3 0.00028 31.0 1.5 37 235-272 12-52 (99)
75 3uj3_X DNA-invertase; helix-tu 44.4 4.7 0.00016 37.0 0.0 34 236-269 148-181 (193)
76 2qvo_A Uncharacterized protein 43.6 4.1 0.00014 32.9 -0.5 26 247-272 31-56 (95)
77 2zcw_A TTHA1359, transcription 43.6 6.5 0.00022 35.5 0.8 66 229-295 116-195 (202)
78 3bja_A Transcriptional regulat 43.4 9.8 0.00033 31.9 1.9 43 229-272 30-73 (139)
79 2x4h_A Hypothetical protein SS 43.3 5.1 0.00017 34.3 0.0 28 245-272 30-57 (139)
80 4aik_A Transcriptional regulat 43.0 5.9 0.0002 34.8 0.4 44 229-272 28-72 (151)
81 3szt_A QCSR, quorum-sensing co 42.8 7.7 0.00026 36.8 1.3 46 227-274 173-218 (237)
82 3d0s_A Transcriptional regulat 42.8 3.6 0.00012 37.9 -1.1 81 192-272 107-203 (227)
83 3e97_A Transcriptional regulat 42.4 1.4 4.8E-05 40.8 -4.0 101 192-294 107-223 (231)
84 3cuo_A Uncharacterized HTH-typ 42.4 4.9 0.00017 32.0 -0.2 27 246-272 38-64 (99)
85 3clo_A Transcriptional regulat 42.2 7.6 0.00026 37.3 1.1 46 228-275 196-241 (258)
86 1pdn_C Protein (PRD paired); p 42.2 32 0.0011 28.1 5.0 79 190-269 32-126 (128)
87 1zx4_A P1 PARB, plasmid partit 42.1 6 0.00021 37.0 0.3 30 240-269 18-47 (192)
88 2l1p_A DNA-binding protein SAT 42.0 5.3 0.00018 32.3 -0.1 23 246-268 32-54 (83)
89 2fbh_A Transcriptional regulat 41.0 7.9 0.00027 32.8 0.9 44 229-272 34-78 (146)
90 3ryp_A Catabolite gene activat 40.9 6.4 0.00022 35.5 0.3 44 229-272 137-193 (210)
91 2kko_A Possible transcriptiona 40.8 6.9 0.00024 32.4 0.5 37 234-272 28-64 (108)
92 1qgp_A Protein (double strande 40.8 5.5 0.00019 31.4 -0.1 38 233-270 16-55 (77)
93 2bv6_A MGRA, HTH-type transcri 39.8 9.4 0.00032 32.3 1.2 42 230-272 35-77 (142)
94 3b02_A Transcriptional regulat 38.9 8.1 0.00028 34.7 0.7 65 229-294 109-187 (195)
95 2pg4_A Uncharacterized protein 38.7 8.8 0.0003 30.7 0.8 27 246-272 30-57 (95)
96 3bro_A Transcriptional regulat 37.7 7.8 0.00027 32.7 0.3 44 229-272 31-76 (141)
97 3tgn_A ADC operon repressor AD 37.6 28 0.00097 29.3 4.0 42 229-272 35-77 (146)
98 2oz6_A Virulence factor regula 37.4 7.8 0.00027 34.8 0.3 81 192-272 95-190 (207)
99 3fm5_A Transcriptional regulat 37.4 7.8 0.00027 33.3 0.3 44 229-272 36-80 (150)
100 2oqg_A Possible transcriptiona 37.3 7.2 0.00025 32.0 0.1 37 234-272 24-60 (114)
101 2l0k_A Stage III sporulation p 37.0 5.2 0.00018 33.0 -0.9 25 245-269 19-43 (93)
102 2q0o_A Probable transcriptiona 37.0 10 0.00034 35.8 1.0 45 228-274 174-218 (236)
103 1l3l_A Transcriptional activat 36.7 12 0.00042 35.2 1.6 45 228-274 172-216 (234)
104 1r1t_A Transcriptional repress 36.7 16 0.00055 31.0 2.2 28 245-272 58-85 (122)
105 1on2_A Transcriptional regulat 36.6 6.9 0.00024 33.6 -0.2 28 245-272 21-48 (142)
106 2htj_A P fimbrial regulatory p 36.5 10 0.00035 29.5 0.9 27 246-272 14-40 (81)
107 1sfx_A Conserved hypothetical 36.2 9.2 0.00031 30.6 0.5 28 245-272 33-60 (109)
108 1o5l_A Transcriptional regulat 36.2 7.5 0.00026 35.5 0.0 80 192-271 101-189 (213)
109 3jth_A Transcription activator 36.2 6.7 0.00023 31.5 -0.3 28 245-272 35-62 (98)
110 2fu4_A Ferric uptake regulatio 36.1 12 0.00042 29.0 1.3 27 246-272 33-64 (83)
111 3u2r_A Regulatory protein MARR 35.9 20 0.00069 31.4 2.9 44 229-272 43-88 (168)
112 3hsr_A HTH-type transcriptiona 35.6 14 0.00049 31.3 1.7 43 229-272 33-76 (140)
113 2pij_A Prophage PFL 6 CRO; tra 35.5 5.6 0.00019 29.5 -0.8 25 243-268 11-35 (67)
114 3boq_A Transcriptional regulat 35.4 10 0.00034 32.9 0.7 43 230-272 45-88 (160)
115 4b8x_A SCO5413, possible MARR- 35.4 14 0.00047 32.1 1.6 44 229-272 32-77 (147)
116 3eco_A MEPR; mutlidrug efflux 35.4 7.2 0.00025 33.0 -0.3 38 235-272 35-73 (139)
117 1qbj_A Protein (double-strande 35.1 9.8 0.00034 30.4 0.5 38 233-270 12-51 (81)
118 3iwz_A CAP-like, catabolite ac 34.9 10 0.00035 34.6 0.7 80 192-271 113-212 (230)
119 3g3z_A NMB1585, transcriptiona 34.8 13 0.00046 31.5 1.4 43 229-272 28-71 (145)
120 3deu_A Transcriptional regulat 34.3 7.8 0.00027 34.4 -0.2 44 229-272 50-94 (166)
121 3mky_B Protein SOPB; partition 34.1 8.7 0.0003 35.8 0.1 43 227-269 21-65 (189)
122 2pex_A Transcriptional regulat 34.1 11 0.00038 32.4 0.8 43 229-272 44-87 (153)
123 3bpv_A Transcriptional regulat 34.1 12 0.0004 31.4 0.9 43 229-272 26-69 (138)
124 2hr3_A Probable transcriptiona 34.0 11 0.00036 32.2 0.6 44 229-272 32-76 (147)
125 4hbl_A Transcriptional regulat 33.7 14 0.0005 31.7 1.5 43 229-272 38-81 (149)
126 3hot_A Transposable element ma 33.7 39 0.0014 33.1 4.9 235 195-441 30-294 (345)
127 2oa4_A SIR5; structure, struct 33.7 9.5 0.00032 32.0 0.2 39 234-272 38-76 (101)
128 1ft9_A Carbon monoxide oxidati 33.3 9.6 0.00033 34.9 0.2 44 229-272 132-189 (222)
129 3s2w_A Transcriptional regulat 33.2 20 0.00067 31.1 2.3 37 235-272 54-90 (159)
130 2ek5_A Predicted transcription 33.2 14 0.00049 31.8 1.3 23 248-270 30-52 (129)
131 3nrv_A Putative transcriptiona 33.2 12 0.00042 31.8 0.9 43 229-272 37-80 (148)
132 2nnn_A Probable transcriptiona 33.1 12 0.00042 31.3 0.8 43 229-272 35-78 (140)
133 2o0y_A Transcriptional regulat 32.9 12 0.00039 36.2 0.7 44 229-272 18-64 (260)
134 2di3_A Bacterial regulatory pr 32.9 21 0.00071 33.6 2.6 51 203-269 1-51 (239)
135 1q1h_A TFE, transcription fact 32.9 14 0.00049 30.3 1.2 27 246-272 33-59 (110)
136 2gau_A Transcriptional regulat 32.7 17 0.00059 33.2 1.9 102 192-294 111-228 (232)
137 3jw4_A Transcriptional regulat 32.6 14 0.00048 31.6 1.2 38 235-272 45-83 (148)
138 3f6o_A Probable transcriptiona 32.4 10 0.00035 31.8 0.2 37 234-272 21-57 (118)
139 1p6r_A Penicillinase repressor 32.2 7.3 0.00025 30.3 -0.7 40 232-272 10-53 (82)
140 3cdh_A Transcriptional regulat 32.2 17 0.00057 31.3 1.6 43 229-272 40-83 (155)
141 2jt1_A PEFI protein; solution 32.1 9.8 0.00034 30.1 0.1 49 203-271 1-49 (77)
142 1r71_A Transcriptional repress 31.8 11 0.00037 34.8 0.3 41 228-268 34-74 (178)
143 3n0r_A Response regulator; sig 31.8 14 0.00048 36.0 1.2 50 229-279 111-160 (286)
144 3kp7_A Transcriptional regulat 31.7 15 0.00051 31.5 1.2 41 230-272 36-77 (151)
145 3dkw_A DNR protein; CRP-FNR, H 31.7 11 0.00038 34.3 0.4 81 192-272 111-204 (227)
146 2jsc_A Transcriptional regulat 31.5 11 0.00037 31.7 0.2 28 245-272 33-60 (118)
147 1mkm_A ICLR transcriptional re 31.3 11 0.00038 36.0 0.3 42 231-272 5-49 (249)
148 2dk5_A DNA-directed RNA polyme 31.1 14 0.00047 30.1 0.8 45 227-271 15-61 (91)
149 2fbk_A Transcriptional regulat 30.8 21 0.00073 31.8 2.1 44 229-272 66-112 (181)
150 2fbi_A Probable transcriptiona 30.7 11 0.00039 31.6 0.3 28 245-272 49-76 (142)
151 3f6v_A Possible transcriptiona 30.6 12 0.00041 33.2 0.4 38 234-273 61-98 (151)
152 3plo_X DNA-invertase; resolvas 30.5 11 0.00036 34.7 0.0 32 241-272 153-184 (193)
153 2g7u_A Transcriptional regulat 30.3 15 0.0005 35.3 1.0 44 229-272 9-55 (257)
154 2o20_A Catabolite control prot 30.2 11 0.00037 36.9 0.0 23 247-269 6-28 (332)
155 1lj9_A Transcriptional regulat 30.2 12 0.00041 31.7 0.3 43 229-272 26-69 (144)
156 3ctp_A Periplasmic binding pro 30.1 11 0.00037 36.8 0.0 22 248-269 4-25 (330)
157 3bj6_A Transcriptional regulat 29.9 19 0.00065 30.7 1.6 43 229-272 37-80 (152)
158 2cw1_A SN4M; lambda CRO fold, 29.8 8.2 0.00028 29.6 -0.7 22 247-268 14-35 (65)
159 3h5o_A Transcriptional regulat 29.6 11 0.00038 36.9 0.0 23 247-269 5-27 (339)
160 1fx7_A Iron-dependent represso 29.5 13 0.00043 35.2 0.3 42 231-272 6-50 (230)
161 2a61_A Transcriptional regulat 29.5 14 0.00047 31.3 0.5 42 230-272 31-73 (145)
162 3pqk_A Biofilm growth-associat 29.4 14 0.00047 29.9 0.5 28 245-272 35-62 (102)
163 2rdp_A Putative transcriptiona 29.4 15 0.00053 31.2 0.9 43 229-272 39-82 (150)
164 3bil_A Probable LACI-family tr 29.2 12 0.00039 37.2 0.0 22 248-269 10-31 (348)
165 1neq_A DNA-binding protein NER 29.1 12 0.00041 29.1 0.1 25 244-268 20-44 (74)
166 3dbi_A Sugar-binding transcrip 29.1 12 0.0004 36.7 0.0 22 248-269 5-26 (338)
167 2xrn_A HTH-type transcriptiona 29.1 10 0.00035 36.1 -0.4 39 234-272 6-47 (241)
168 3jvd_A Transcriptional regulat 29.0 12 0.0004 36.9 0.0 23 247-269 7-29 (333)
169 1k78_A Paired box protein PAX5 29.0 53 0.0018 28.1 4.4 79 190-269 47-141 (149)
170 3nqo_A MARR-family transcripti 28.9 12 0.00042 33.8 0.2 43 230-272 39-83 (189)
171 3oop_A LIN2960 protein; protei 28.8 12 0.00041 31.8 0.0 43 229-272 34-77 (143)
172 3cjn_A Transcriptional regulat 28.7 13 0.00045 32.2 0.3 36 236-272 57-92 (162)
173 3qp6_A CVIR transcriptional re 28.7 31 0.0011 33.3 3.0 45 228-274 196-240 (265)
174 3bdd_A Regulatory protein MARR 28.7 15 0.00051 30.9 0.6 28 245-272 44-71 (142)
175 1jye_A Lactose operon represso 28.6 12 0.00041 37.0 0.0 22 248-269 5-26 (349)
176 2hsg_A Glucose-resistance amyl 28.5 10 0.00035 37.1 -0.6 22 248-269 4-25 (332)
177 3kcc_A Catabolite gene activat 28.4 12 0.00042 35.4 0.0 44 229-272 187-243 (260)
178 1ub9_A Hypothetical protein PH 28.0 9.2 0.00031 30.4 -0.8 28 245-272 29-56 (100)
179 3e3m_A Transcriptional regulat 27.9 13 0.00043 36.9 0.0 22 248-269 14-35 (355)
180 2fa5_A Transcriptional regulat 27.9 17 0.00059 31.4 0.9 37 235-272 53-89 (162)
181 2frh_A SARA, staphylococcal ac 27.7 12 0.00041 31.6 -0.2 44 229-272 34-79 (127)
182 2eth_A Transcriptional regulat 27.7 16 0.00054 31.5 0.6 42 230-272 42-84 (154)
183 1jgs_A Multiple antibiotic res 27.6 16 0.00054 30.6 0.6 43 229-272 31-74 (138)
184 1z91_A Organic hydroperoxide r 27.5 13 0.00044 31.6 0.0 43 229-272 37-80 (147)
185 3fmy_A HTH-type transcriptiona 27.5 9.9 0.00034 29.0 -0.7 27 242-268 20-46 (73)
186 2ia2_A Putative transcriptiona 27.4 14 0.00049 35.6 0.3 44 229-272 16-62 (265)
187 1qpz_A PURA, protein (purine n 27.4 10 0.00036 37.2 -0.7 22 248-269 2-23 (340)
188 3kat_A Nacht, LRR and PYD doma 27.4 56 0.0019 27.5 4.0 60 62-121 34-95 (107)
189 2qww_A Transcriptional regulat 26.9 15 0.0005 31.6 0.3 43 229-272 38-81 (154)
190 3dn7_A Cyclic nucleotide bindi 26.8 13 0.00046 32.9 0.0 41 230-270 149-192 (194)
191 2cob_A LCOR protein; MLR2, KIA 26.7 12 0.00043 29.2 -0.2 39 231-269 14-53 (70)
192 3m8j_A FOCB protein; all-alpha 26.4 40 0.0014 28.7 2.8 55 202-270 29-84 (111)
193 3bd1_A CRO protein; transcript 26.4 11 0.00039 28.9 -0.5 24 244-268 10-33 (79)
194 3kjx_A Transcriptional regulat 26.3 11 0.00039 36.9 -0.7 23 247-269 11-33 (344)
195 3r4k_A Transcriptional regulat 26.2 15 0.00053 35.3 0.3 42 232-273 4-48 (260)
196 2p5k_A Arginine repressor; DNA 26.1 13 0.00045 27.1 -0.2 23 246-268 19-46 (64)
197 2bgc_A PRFA; bacterial infecti 25.8 14 0.00049 34.2 -0.0 66 229-295 137-219 (238)
198 1okr_A MECI, methicillin resis 25.5 9.6 0.00033 31.7 -1.2 38 234-272 13-54 (123)
199 2cyy_A Putative HTH-type trans 25.4 25 0.00084 30.6 1.5 28 245-272 20-47 (151)
200 4fx0_A Probable transcriptiona 25.4 31 0.0011 29.9 2.1 44 229-272 30-78 (148)
201 2fxa_A Protease production reg 25.1 21 0.00073 33.0 1.0 43 229-272 45-88 (207)
202 2g9w_A Conserved hypothetical 25.1 15 0.00051 31.6 -0.0 41 232-272 10-54 (138)
203 3kz3_A Repressor protein CI; f 25.0 13 0.00046 28.5 -0.3 25 244-268 23-47 (80)
204 2xi8_A Putative transcription 25.0 12 0.00042 27.0 -0.5 25 244-268 12-36 (66)
205 2pn6_A ST1022, 150AA long hypo 24.9 24 0.0008 30.6 1.2 27 246-272 17-43 (150)
206 1u2w_A CADC repressor, cadmium 24.9 11 0.00036 32.0 -1.1 28 245-272 55-82 (122)
207 1s3j_A YUSO protein; structura 24.7 14 0.00046 31.8 -0.4 43 229-272 34-77 (155)
208 1zug_A Phage 434 CRO protein; 24.4 10 0.00035 27.9 -1.1 25 244-268 14-38 (71)
209 3omt_A Uncharacterized protein 24.1 14 0.00048 27.7 -0.3 42 244-298 19-60 (73)
210 1r69_A Repressor protein CI; g 24.1 11 0.00036 27.7 -1.1 25 244-268 12-36 (69)
211 3e6m_A MARR family transcripti 24.0 16 0.00054 31.9 -0.1 42 230-272 51-93 (161)
212 2a6c_A Helix-turn-helix motif; 24.0 12 0.00042 29.1 -0.8 26 243-268 28-53 (83)
213 2w48_A Sorbitol operon regulat 23.9 19 0.00066 35.6 0.5 33 238-270 13-45 (315)
214 2w25_A Probable transcriptiona 23.8 22 0.00075 30.9 0.8 28 245-272 20-47 (150)
215 1i1g_A Transcriptional regulat 23.6 23 0.00077 30.2 0.8 27 246-272 18-44 (141)
216 2cfx_A HTH-type transcriptiona 23.5 23 0.00077 30.7 0.8 26 246-271 19-44 (144)
217 3h5t_A Transcriptional regulat 23.1 12 0.00042 37.1 -1.2 23 247-269 10-32 (366)
218 3f3x_A Transcriptional regulat 22.9 19 0.00065 30.5 0.2 25 248-272 52-76 (144)
219 2nyx_A Probable transcriptiona 22.9 18 0.00061 31.9 0.0 43 229-272 42-85 (168)
220 2cg4_A Regulatory protein ASNC 22.8 27 0.00093 30.3 1.2 28 245-272 21-48 (152)
221 1xwr_A Regulatory protein CII; 22.7 25 0.00086 29.1 0.9 29 247-275 24-56 (97)
222 1v4r_A Transcriptional repress 22.6 25 0.00084 28.5 0.8 22 248-269 37-58 (102)
223 2dbb_A Putative HTH-type trans 22.5 28 0.00095 30.2 1.2 28 245-272 22-49 (151)
224 4ham_A LMO2241 protein; struct 22.4 31 0.0011 29.6 1.5 21 249-269 41-61 (134)
225 2b5a_A C.BCLI; helix-turn-heli 22.4 12 0.00041 28.1 -1.1 25 244-268 21-45 (77)
226 3neu_A LIN1836 protein; struct 22.1 40 0.0014 28.6 2.2 23 249-271 40-62 (125)
227 3qq6_A HTH-type transcriptiona 22.0 12 0.00042 28.8 -1.1 46 241-298 18-63 (78)
228 4ghj_A Probable transcriptiona 22.0 12 0.00043 30.9 -1.1 25 242-266 45-69 (101)
229 3eus_A DNA-binding protein; st 21.9 14 0.00047 29.0 -0.9 27 242-268 23-49 (86)
230 2r1j_L Repressor protein C2; p 21.8 15 0.00051 26.6 -0.6 25 244-268 16-40 (68)
231 2k4b_A Transcriptional regulat 21.6 20 0.00067 29.6 0.0 41 231-272 35-79 (99)
232 2zkz_A Transcriptional repress 21.6 9.4 0.00032 31.1 -2.0 29 245-273 40-68 (99)
233 3mq0_A Transcriptional repress 21.5 13 0.00044 36.3 -1.3 45 229-273 25-72 (275)
234 2p5v_A Transcriptional regulat 21.1 30 0.001 30.4 1.2 27 246-272 24-50 (162)
235 1rzs_A Antirepressor, regulato 20.9 12 0.0004 27.8 -1.4 22 246-267 10-31 (61)
236 1y7y_A C.AHDI; helix-turn-heli 20.7 14 0.00047 27.5 -1.1 42 244-298 24-65 (74)
237 3o9x_A Uncharacterized HTH-typ 20.7 18 0.00061 30.8 -0.5 27 242-268 80-106 (133)
238 2wiu_B HTH-type transcriptiona 20.6 15 0.00051 28.4 -0.9 25 244-268 23-47 (88)
239 3b7h_A Prophage LP1 protein 11 20.5 16 0.00055 27.4 -0.7 25 244-268 18-42 (78)
240 1zs4_A Regulatory protein CII; 20.3 24 0.00082 28.5 0.3 23 247-269 25-47 (83)
241 2ofy_A Putative XRE-family tra 20.2 23 0.00079 27.3 0.2 33 236-268 17-49 (86)
242 2k9q_A Uncharacterized protein 20.2 13 0.00043 28.3 -1.4 26 243-268 12-37 (77)
243 2ao9_A Phage protein; structur 20.1 19 0.00064 32.5 -0.5 41 229-269 23-71 (155)
244 1vz0_A PARB, chromosome partit 20.0 25 0.00084 33.5 0.3 41 228-268 116-156 (230)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=93.14 E-value=0.02 Score=40.19 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhh
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~ 269 (524)
..++.+++..+... +..|.++..||..+|||.+||.+++.+
T Consensus 4 ~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 46777777555444 468999999999999999999988764
No 2
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=91.43 E-value=0.082 Score=40.59 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=41.9
Q ss_pred CCChhhhhhhhhhc-c--ccCCCccchhhccCccccceehhhhhhHHHHHhh
Q 041521 229 AIPVRQRVAVCVWR-L--ATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTV 277 (524)
Q Consensus 229 ~l~~e~rL~i~L~~-L--atG~s~~~la~~FgiS~STvsriv~~v~~aI~~~ 277 (524)
.+|+.++-.+.|++ | ..|.++.+||..+|+|.+||...+.+....|...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 58899998888888 3 5899999999999999999999988877766553
No 3
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=90.49 E-value=0.06 Score=40.41 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=36.6
Q ss_pred CCCCChhhhhhhhhhccccCCC----ccchhhccCccccceehhhhhh
Q 041521 227 RDAIPVRQRVAVCVWRLATGEP----LRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 227 r~~l~~e~rL~i~L~~LatG~s----~~~la~~FgiS~STvsriv~~v 270 (524)
+...+++.++.+ +.++..|.+ ...++..|||+.+|+.+++...
T Consensus 3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456788999888 777888888 9999999999999999887653
No 4
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=90.17 E-value=0.096 Score=44.33 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHhhccccccCCCCCCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521 202 RMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI 274 (524)
Q Consensus 202 RmSr~tF~~Lv~~L~~~i~~~~t~~r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI 274 (524)
|||.+.|+.++..++ ++ +..+-++=.||-.|.++.+|+..+|+|+++|++++.+.-...
T Consensus 4 rmT~~eFe~~~~~l~-------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~ 62 (101)
T 2w7n_A 4 RLTESQFQEAIQGLE-------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp CCCHHHHHHHHTTCC-------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCC-------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 799999999875441 11 233455667788999999999999999999999998866553
No 5
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=90.16 E-value=0.087 Score=43.34 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=37.5
Q ss_pred CCCCChhhhhhhhhhcccc-CCCccchhhccCccccceehhhhhh
Q 041521 227 RDAIPVRQRVAVCVWRLAT-GEPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 227 r~~l~~e~rL~i~L~~Lat-G~s~~~la~~FgiS~STvsriv~~v 270 (524)
++..+++.++.+.-.++.. |.+...++..||||.+|+++++...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567888888887777777 9999999999999999999987654
No 6
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=89.71 E-value=0.17 Score=38.46 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=39.8
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL 278 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L 278 (524)
.+|+.++-.+.|++ ..|.++.+||..+|+|.+||.+.+.+....|...+
T Consensus 15 ~L~~~~r~il~l~~-~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQ-LLGLSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 57888887777665 46899999999999999999999988877776543
No 7
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=89.21 E-value=0.15 Score=39.62 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCCChhhhhhhhhhcc-c--cCCCccchhhccCccccceehhhhhhHHHHH
Q 041521 228 DAIPVRQRVAVCVWRL-A--TGEPLRVVSKRFGLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~L-a--tG~s~~~la~~FgiS~STvsriv~~v~~aI~ 275 (524)
..+|+.++-.+.|+|+ . .|.++.+||..+|+|.+||...+.+....|.
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3689999988888874 3 7899999999999999999999988887776
No 8
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=88.70 E-value=0.091 Score=37.20 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhh
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~ 269 (524)
.++.++.. ..+..+..|.+...|+..+|||.+||++++.+
T Consensus 5 ~~~~~~~~-~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 5 AINKHEQE-QISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SSCTTHHH-HHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44444432 22333567899999999999999999988764
No 9
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=88.57 E-value=0.12 Score=41.84 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCChhhhhhhhhhc-cc--cCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521 229 AIPVRQRVAVCVWR-LA--TGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL 278 (524)
Q Consensus 229 ~l~~e~rL~i~L~~-La--tG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L 278 (524)
.+|+.++-.+.|+| |. .|.++.+||..+|+|.+||..++.+....|...+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 57889998888887 45 7899999999999999999999888777765543
No 10
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=86.97 E-value=0.31 Score=33.15 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.9
Q ss_pred CCHhhHHHHcCCCHHHHHHHH
Q 041521 192 FPEEEFWRDFRMSKATFEMIC 212 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv 212 (524)
++|++|...|+|+++.|..|-
T Consensus 1 Lsd~dF~~vFgmsr~eF~~LP 21 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAFANLP 21 (35)
T ss_dssp CCHHHHHHHHSSCHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHCc
Confidence 579999999999999999873
No 11
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=86.35 E-value=0.25 Score=40.23 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=40.6
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL 278 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L 278 (524)
.+|+.++-++.|+|+ .|.++..||..+|+|.+||...+.+....|...+
T Consensus 37 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 578888887777654 7899999999999999999999888877776544
No 12
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=85.60 E-value=0.4 Score=33.03 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=19.0
Q ss_pred CCHhhHHHHcCCCHHHHHHHH
Q 041521 192 FPEEEFWRDFRMSKATFEMIC 212 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv 212 (524)
++|++|...|+|+++.|..|-
T Consensus 3 Lsd~dF~~vFgmsr~eF~~LP 23 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAALP 23 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 589999999999999999863
No 13
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=85.47 E-value=0.16 Score=42.98 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCChhhhhhhhhhc-----cccC-CCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQRVAVCVWR-----LATG-EPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~rL~i~L~~-----LatG-~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
-+++.++-++.+++ |..| .+|+.|+...|+|.|||+|+ .+.+.
T Consensus 35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~ 83 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLK 83 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHH
Confidence 46677775555543 3467 99999999999999999998 54443
No 14
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=84.10 E-value=0.27 Score=41.26 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=42.5
Q ss_pred CCChhhhhhhhhhcc---ccCCCccchhhccCccccceehhhhhhHHHHHhh
Q 041521 229 AIPVRQRVAVCVWRL---ATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTV 277 (524)
Q Consensus 229 ~l~~e~rL~i~L~~L---atG~s~~~la~~FgiS~STvsriv~~v~~aI~~~ 277 (524)
.+|+.++-.+.|+|+ ..|.++.+||..+|+|.+||..+..+....|...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 588999999999885 3789999999999999999999988887777654
No 15
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=82.01 E-value=1.4 Score=37.77 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=52.7
Q ss_pred CCCHhhHHHHcCCCHHHHHHHHHHhhccccccCCCCCCCCChhhhhhhhhhccccCCCccchhhccC--ccccceehhhh
Q 041521 191 DFPEEEFWRDFRMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFG--LGISTCHKLVL 268 (524)
Q Consensus 191 ~~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~t~~r~~l~~e~rL~i~L~~LatG~s~~~la~~Fg--iS~STvsriv~ 268 (524)
.++-.+.-+.+++++.|+...+............++...+++++...+.-.....+.+...|+..+| +|.+||++++.
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIK 101 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHH
Confidence 4677888899999999999888765543211122233456666553332222223478899999998 78889998877
Q ss_pred h
Q 041521 269 E 269 (524)
Q Consensus 269 ~ 269 (524)
+
T Consensus 102 ~ 102 (141)
T 1u78_A 102 R 102 (141)
T ss_dssp H
T ss_pred H
Confidence 5
No 16
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=81.50 E-value=0.38 Score=38.87 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=34.3
Q ss_pred CCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhH
Q 041521 227 RDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVC 271 (524)
Q Consensus 227 r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~ 271 (524)
+...+.+.+..+.-.+ ..|.+...|+..||||.+|+++++.+.-
T Consensus 20 ~~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 20 LRSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CSSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3467788776555444 5789999999999999999999876543
No 17
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=80.80 E-value=0.62 Score=35.60 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=37.7
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHH
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~ 275 (524)
..+++.++-.+.+ +..|.++.++|..+|+|.+||...+.+....+.
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4678888766666 378999999999999999999998887766554
No 18
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=78.89 E-value=0.53 Score=40.53 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=34.3
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhh
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v 270 (524)
..++.+++..+...+ ..|.+...+|..+|+|.+||++++.+.
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 567788776665544 689999999999999999999988764
No 19
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.63 E-value=0.58 Score=40.21 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=37.9
Q ss_pred CCCCChhhhhhhhhhccccCCCcc-chhhccCccccceehhhhhhHH
Q 041521 227 RDAIPVRQRVAVCVWRLATGEPLR-VVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 227 r~~l~~e~rL~i~L~~LatG~s~~-~la~~FgiS~STvsriv~~v~~ 272 (524)
+..++.+.++-+.-.+..+|.+.. ++|..|||+.+|++++++.--.
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhh
Confidence 567899999888766657777765 9999999999999999887544
No 20
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=78.50 E-value=0.68 Score=38.00 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=38.9
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHh
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKT 276 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~ 276 (524)
.+++.++-.+.|+ ..|.++.+||..+|+|.+||...+.+....|..
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 5788888777774 899999999999999999999988887776643
No 21
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=78.18 E-value=0.8 Score=42.72 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=42.4
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL 278 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L 278 (524)
.+|+.++-++.|+|+ .|.++.+||..+|+|.+||.+.+.+....|...|
T Consensus 187 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 588999988888776 6899999999999999999999988887776644
No 22
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=78.10 E-value=0.83 Score=40.53 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=38.2
Q ss_pred CCCCCChhhhhhhhhhc-cc-cCCCccchhh----cc--CccccceehhhhhhH
Q 041521 226 LRDAIPVRQRVAVCVWR-LA-TGEPLRVVSK----RF--GLGISTCHKLVLEVC 271 (524)
Q Consensus 226 ~r~~l~~e~rL~i~L~~-La-tG~s~~~la~----~F--giS~STvsriv~~v~ 271 (524)
.|..++.++++.|..++ =. .+.+..+|+. .| |||+|||++++..=-
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 46789999999999888 33 4568889999 99 999999999987643
No 23
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=77.52 E-value=0.8 Score=38.14 Aligned_cols=45 Identities=13% Similarity=-0.014 Sum_probs=39.6
Q ss_pred CCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhH
Q 041521 227 RDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVC 271 (524)
Q Consensus 227 r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~ 271 (524)
.+..+.+.|+.|++..+..+.++.+++.+|+|+.+++.++...+.
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~~ 74 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVA 74 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred hhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999888876653
No 24
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=77.09 E-value=0.68 Score=36.92 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=37.7
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHH
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~ 275 (524)
..++..++-.+.| +..|.++.+||..+|+|.+||...+.+....|.
T Consensus 20 ~~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKL--IAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3578888877766 378999999999999999999988887666543
No 25
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=76.95 E-value=0.73 Score=39.36 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=39.7
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL 278 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L 278 (524)
.+|+.++-++.|+| ..|.++.++|..+|+|.+||.+.+.+....+...+
T Consensus 22 ~L~~~~r~vl~l~y-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYY-ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHH-HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46777776665544 57899999999999999999999998887776654
No 26
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=76.47 E-value=0.42 Score=34.72 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=23.6
Q ss_pred cccCCCccchhhccCccccceehhhh
Q 041521 243 LATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 243 LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
+..|.++.++|..+|+|.+||++++.
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46899999999999999999998865
No 27
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=75.89 E-value=0.75 Score=38.53 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=35.1
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhH
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVC 271 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~ 271 (524)
..++.+.+..+...+ ..|.+...++..||||.+||++++....
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467788877665544 5899999999999999999999987654
No 28
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=75.53 E-value=0.81 Score=40.18 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=36.5
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..++.+.+..+...+ ..|.+...+|..||||.+||++++.+...
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467888887776655 57999999999999999999999887543
No 29
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=75.02 E-value=1.1 Score=37.16 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=41.2
Q ss_pred CCCCChhhhhhhhhhccccCCCccchhhcc-CccccceehhhhhhHHHHH
Q 041521 227 RDAIPVRQRVAVCVWRLATGEPLRVVSKRF-GLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 227 r~~l~~e~rL~i~L~~LatG~s~~~la~~F-giS~STvsriv~~v~~aI~ 275 (524)
.+.+...-+++|.|.+--+|.++..||..| |...|||...+.++-..+.
T Consensus 27 ~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 27 SRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 346666778999888888999999999999 8999999988888776554
No 30
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=74.67 E-value=1.3 Score=34.55 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.3
Q ss_pred CCHhhHHHHcCCCHHHHHHHH
Q 041521 192 FPEEEFWRDFRMSKATFEMIC 212 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv 212 (524)
++|++|...|+|+++.|..|-
T Consensus 34 LsdedF~~vFgmsr~eF~~LP 54 (68)
T 1qzp_A 34 LSAEDFSRVFAMSPEEFGKLA 54 (68)
T ss_dssp BCHHHHHHHSSSCHHHHHHSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 689999999999999999873
No 31
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=74.44 E-value=0.85 Score=35.42 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=34.2
Q ss_pred CChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521 230 IPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI 274 (524)
Q Consensus 230 l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI 274 (524)
+|+.++-.+.| + ..|.++.+||..+|+|.+||...+.+....+
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 55666666666 3 7899999999999999999998887766544
No 32
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=74.39 E-value=1.7 Score=38.51 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=42.1
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL 278 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L 278 (524)
..+|+.++-++.|.++ .|.++.+||...|+|.+||...+.+....|...+
T Consensus 92 ~~Lp~~~r~vl~L~~~-~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAM-EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TTSCTTHHHHHTTTSS-SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4688999987777655 5899999999999999999999888888777655
No 33
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=74.00 E-value=1.5 Score=39.26 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=39.5
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHh
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKT 276 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~ 276 (524)
.+|+.++-++.|+++ .|.++.+||..+|+|.+||...+.+....|..
T Consensus 135 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888877665 68999999999999999999988887776654
No 34
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=73.49 E-value=0.98 Score=36.52 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=36.7
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHH
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~ 275 (524)
.+++.++-.+.| +..|.++.+||..+|+|.+||...+.+....|.
T Consensus 29 ~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLL--IAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHH--HHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 577778777766 378999999999999999999988887665543
No 35
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=73.19 E-value=1.3 Score=39.99 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=41.5
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL 278 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L 278 (524)
.+|+.++-++.|+++ .|.++.+||..+|+|.+||...+.+....|...|
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 467888888877765 6899999999999999999999988888776654
No 36
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=72.75 E-value=1.1 Score=32.94 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=28.5
Q ss_pred cccCCCccchhhccCccccceehhhhhhHHHHH
Q 041521 243 LATGEPLRVVSKRFGLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 243 LatG~s~~~la~~FgiS~STvsriv~~v~~aI~ 275 (524)
+..|.++.+||..+|+|.+||...+.+...-+.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 688999999999999999999988887665543
No 37
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=71.75 E-value=2.2 Score=35.41 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=44.6
Q ss_pred HHHHHHHhhccccccCCCCCCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHH
Q 041521 208 FEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 208 F~~Lv~~L~~~i~~~~t~~r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~ 275 (524)
...+++.|.+.- .....+++.++-.+.| +..|.++.+||...|+|.+||...+.++...+.
T Consensus 18 ~~~~l~~l~~~~-----~~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 18 VAKLLEKISAGG-----YGDKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp HHHHHHHHHCCC-----CSSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHccCC-----cccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 344566665431 1145788888866655 469999999999999999999988887666543
No 38
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=71.74 E-value=1.5 Score=37.36 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=40.1
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL 278 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L 278 (524)
.+|+.++-++.|+| ..|.++.+||..+|+|.+||...+.+....|...+
T Consensus 25 ~L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46777876666544 57899999999999999999999998888776654
No 39
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=71.20 E-value=1.5 Score=34.15 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.2
Q ss_pred CCHhhHHHHcCCCHHHHHHHH
Q 041521 192 FPEEEFWRDFRMSKATFEMIC 212 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv 212 (524)
++|++|...|+|+++.|..|-
T Consensus 33 LsdedF~~vFgms~~eF~~LP 53 (67)
T 1yu8_X 33 LSDEDFKAVFGMTRSAFANLP 53 (67)
T ss_dssp SCHHHHHHHHSSCHHHHHTSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 689999999999999999763
No 40
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=70.65 E-value=0.58 Score=39.01 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=35.4
Q ss_pred CCCChhhhhhhhhhccccC-------CCccchhhccCccccceehhhhhh
Q 041521 228 DAIPVRQRVAVCVWRLATG-------EPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG-------~s~~~la~~FgiS~STvsriv~~v 270 (524)
...+++.++.+.-.++..| .++..++..||||.+|+++++...
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678888887777777665 789999999999999999887653
No 41
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=69.65 E-value=1.4 Score=38.30 Aligned_cols=48 Identities=6% Similarity=0.156 Sum_probs=38.9
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhc
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVL 278 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L 278 (524)
.+|+.++-.+. + +-.|.++.+||..+|+|.+||...+.+....|...|
T Consensus 109 ~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46777777666 3 457999999999999999999999888877776644
No 42
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=69.07 E-value=1.5 Score=34.10 Aligned_cols=20 Identities=15% Similarity=0.471 Sum_probs=18.6
Q ss_pred CCHhhHHHHcCCCHHHHHHH
Q 041521 192 FPEEEFWRDFRMSKATFEMI 211 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~L 211 (524)
++|++|...|+|+++.|..|
T Consensus 33 LsdedF~~vFgmsr~eF~~L 52 (67)
T 2k6m_S 33 LTDEDFEFALDMTRDEYNAL 52 (67)
T ss_dssp SCHHHHHHHTSSCHHHHTTS
T ss_pred CCHHHHHHHHCcCHHHHHHC
Confidence 68999999999999999876
No 43
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=68.95 E-value=1.1 Score=40.02 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=34.2
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhh
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v 270 (524)
..++.+.+..+...+ ..|.+...++..||||.+||++++.+.
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467788877665544 689999999999999999999987653
No 44
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=67.03 E-value=1.7 Score=35.41 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=35.5
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI 274 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI 274 (524)
..++..++-.+.| ++.|.++.+||..+|||..||..++.++..-+
T Consensus 28 ~~Lt~rE~~Vl~l--~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 28 DVLTPRECLILQE--VEKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp -CCCHHHHHHHHH--HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4677777765544 44999999999999999999998888765544
No 45
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=65.54 E-value=1.3 Score=41.25 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+|+.++-++.|+++ .|.++.+||..+|+|.+||.+.+.+...
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp --------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578888888888775 7899999999999999999988776544
No 46
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=62.53 E-value=2 Score=35.23 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.7
Q ss_pred CCHhhHHHHcCCCHHHHHHHHH
Q 041521 192 FPEEEFWRDFRMSKATFEMICE 213 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~ 213 (524)
++|++|...|+|+++.|..|-.
T Consensus 48 LSdedF~~vFgMsr~eF~~LP~ 69 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLAL 69 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSCH
T ss_pred CCHHHHHHHHCcCHHHHHHChH
Confidence 6899999999999999998743
No 47
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=60.02 E-value=4.5 Score=37.59 Aligned_cols=80 Identities=4% Similarity=-0.081 Sum_probs=54.3
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhcccccc--CCCCCCCCChhhhhhhhhhccccC--------CCccchhhccCcccc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKK--NTMLRDAIPVRQRVAVCVWRLATG--------EPLRVVSKRFGLGIS 261 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~--~t~~r~~l~~e~rL~i~L~~LatG--------~s~~~la~~FgiS~S 261 (524)
++.+.|...+.-.+.....++..+...+... ........++++||+-+|..++.. .+..+||...|+++.
T Consensus 122 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~ 201 (232)
T 1zyb_A 122 ISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRL 201 (232)
T ss_dssp EEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHH
T ss_pred EEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChh
Confidence 4566777777766665555555544432111 011123568999999999887632 467899999999999
Q ss_pred ceehhhhhhH
Q 041521 262 TCHKLVLEVC 271 (524)
Q Consensus 262 Tvsriv~~v~ 271 (524)
|++|++.++.
T Consensus 202 tvsR~l~~l~ 211 (232)
T 1zyb_A 202 NISKTLNELQ 211 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 48
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=59.44 E-value=4.8 Score=34.42 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=27.7
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 34 ~lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 34 DLTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 444444 34444433 34788999999999999999998887654
No 49
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=55.29 E-value=2.6 Score=35.83 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=24.5
Q ss_pred hccccCCCccchhhccCccccceehhhh
Q 041521 241 WRLATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 241 ~~LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|..|.+|+.|+...|+|.+||+|+-+
T Consensus 53 ~lL~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 53 KMLTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 4488999999999999999999988643
No 50
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=54.85 E-value=3.5 Score=34.53 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=40.2
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHh
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKT 276 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~ 276 (524)
+.+...-+++|.|.+=-++.++..||..||...|||...+..+-..+..
T Consensus 32 ~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 32 RALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 4556666888888777799999999999999999998888887765543
No 51
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=54.61 E-value=2.9 Score=38.13 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=61.6
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCChhhhhhhhhhcccc-------CCCccchhhccCccccc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKN--TMLRDAIPVRQRVAVCVWRLAT-------GEPLRVVSKRFGLGIST 262 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~--t~~r~~l~~e~rL~i~L~~Lat-------G~s~~~la~~FgiS~ST 262 (524)
++-+.|...+.-.+..-..+...+...+.... .......+++++++-+|..++. ..+..+||...|+++.|
T Consensus 106 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~t 185 (220)
T 3dv8_A 106 IPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREV 185 (220)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHH
T ss_pred EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHH
Confidence 45566666666565544444444433221100 0001246789999999988775 56788999999999999
Q ss_pred eehhhhhhHHH-HHhhcccccccCcchHHHHHH
Q 041521 263 CHKLVLEVCSA-IKTVLMPKFLQWPDELKMKQI 294 (524)
Q Consensus 263 vsriv~~v~~a-I~~~L~~~~I~~P~~ee~~~i 294 (524)
++|++.++.+. +.+ +....|.-++.+.+..+
T Consensus 186 vsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~~ 217 (220)
T 3dv8_A 186 ITRMLRYFQVEGLVK-LSRGKITILDSKRLETL 217 (220)
T ss_dssp HHHHHHHHHHTTSEE-EETTEEEESCHHHHHHH
T ss_pred HHHHHHHHHHCCCEE-eCCCEEEEeCHHHHHHH
Confidence 99998886542 111 22334444555555444
No 52
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=53.75 E-value=6.2 Score=43.30 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=41.9
Q ss_pred CCCChhhhhhhhhhccc---cCCCccchhhccCccccceehhhhhhHHHHHhh
Q 041521 228 DAIPVRQRVAVCVWRLA---TGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTV 277 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~La---tG~s~~~la~~FgiS~STvsriv~~v~~aI~~~ 277 (524)
..+|+.++-.+.|+|+- .|.++..||..+|||.+||..+..+....|...
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~ 601 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP 601 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSC
T ss_pred HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCc
Confidence 36899999999888763 688999999999999999999988877665543
No 53
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=53.32 E-value=2.3 Score=36.88 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=26.9
Q ss_pred hhhhhccccCCCccchhhccCccccceehhhh
Q 041521 237 AVCVWRLATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 237 ~i~L~~LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
.-.+..|+.|.+|++|+...|+|.+||+|+-+
T Consensus 66 ~eV~klL~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 66 LQVAKMIKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34466789999999999999999999988543
No 54
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=52.60 E-value=5.6 Score=41.63 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=36.4
Q ss_pred CCChhhhhhhhhhc-cc--cCCCccchhhccCccccceehhhhhhHHHHH
Q 041521 229 AIPVRQRVAVCVWR-LA--TGEPLRVVSKRFGLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 229 ~l~~e~rL~i~L~~-La--tG~s~~~la~~FgiS~STvsriv~~v~~aI~ 275 (524)
.+|+.++-.+.|+| |. .|.++..||..+|||..||..+..+....|.
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 57888888888888 54 6789999999999999999999888777766
No 55
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=52.48 E-value=7 Score=32.14 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=27.8
Q ss_pred hhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 234 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 234 ~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++..|. ..+.+..+|+..+|++++||++.+.....
T Consensus 29 ~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 29 IRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444443 34568999999999999999999887654
No 56
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=52.29 E-value=2.9 Score=38.80 Aligned_cols=103 Identities=15% Similarity=0.052 Sum_probs=60.5
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCChhhhhhhhhhcccc----------CCCccchhhccCcc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKN--TMLRDAIPVRQRVAVCVWRLAT----------GEPLRVVSKRFGLG 259 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~--t~~r~~l~~e~rL~i~L~~Lat----------G~s~~~la~~FgiS 259 (524)
++.+.|...+.-.+..-..++..+...+.... .......++++||+-+|..++. ..+..+||...|++
T Consensus 112 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~s 191 (237)
T 3fx3_A 112 IPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMK 191 (237)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCC
T ss_pred EcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCC
Confidence 34556665555455443434443333221100 0012356899999999988763 23467899999999
Q ss_pred ccceehhhhhhHHHHHhhcccccccCcchHHHHHHH
Q 041521 260 ISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIK 295 (524)
Q Consensus 260 ~STvsriv~~v~~aI~~~L~~~~I~~P~~ee~~~i~ 295 (524)
+.||+|++.++...=.. .....|.-.+.+.+..++
T Consensus 192 r~tvsR~l~~L~~~gi~-~~~~~i~I~d~~~L~~~~ 226 (237)
T 3fx3_A 192 PESLSRAFSRLKAAGVT-VKRNHAEIEDIALLRDYA 226 (237)
T ss_dssp HHHHHHHHHHHGGGTEE-CCTTEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCeE-eeCCEEEEcCHHHHHHHh
Confidence 99999999886543222 334445555555554443
No 57
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=52.17 E-value=2.5 Score=34.20 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=23.6
Q ss_pred ccCCCccchhhccCccccceehhhhhhHH
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..+.+..+|+..+|+|++||++++.....
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34567889999999999999998876543
No 58
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=52.06 E-value=3.7 Score=36.11 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=28.7
Q ss_pred hhhhhccccCCCccchhhccCc-cccceehhhhh
Q 041521 237 AVCVWRLATGEPLRVVSKRFGL-GISTCHKLVLE 269 (524)
Q Consensus 237 ~i~L~~LatG~s~~~la~~Fgi-S~STvsriv~~ 269 (524)
--.+-+|+.|.+++.++..+|| |.+|+++++.+
T Consensus 19 e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 19 DDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp HHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3455677899999999999999 99999999876
No 59
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=49.34 E-value=2.7 Score=32.22 Aligned_cols=21 Identities=14% Similarity=0.225 Sum_probs=18.5
Q ss_pred CccchhhccCccccceehhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~ 268 (524)
+..+||...|||.+||+++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 467899999999999999876
No 60
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=49.17 E-value=3.3 Score=35.36 Aligned_cols=41 Identities=2% Similarity=-0.040 Sum_probs=29.9
Q ss_pred hhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 232 VRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 232 ~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
...+++..|+.-..+.+..+|+..+|++++||++++.....
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455555632245688999999999999999998776543
No 61
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=49.16 E-value=2.6 Score=39.69 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=54.3
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCChhhhhhhhhhcccc--------------CCCccchhhc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKN--TMLRDAIPVRQRVAVCVWRLAT--------------GEPLRVVSKR 255 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~--t~~r~~l~~e~rL~i~L~~Lat--------------G~s~~~la~~ 255 (524)
++.+.|...+.-.+.....++..+...+.... ...-...++++||+-+|..++. ..+..+||..
T Consensus 123 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~ 202 (243)
T 3la7_A 123 APIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEA 202 (243)
T ss_dssp EEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHH
T ss_pred EcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHH
Confidence 46677777777777666556555544321110 0001245789999999987752 3467899999
Q ss_pred cCccccceehhhhhhHH
Q 041521 256 FGLGISTCHKLVLEVCS 272 (524)
Q Consensus 256 FgiS~STvsriv~~v~~ 272 (524)
.|++..||+|++.++..
T Consensus 203 lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 203 IGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp HTCCHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHH
Confidence 99999999999887644
No 62
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=48.83 E-value=3.3 Score=35.41 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.4
Q ss_pred CCccchhhccCccccceehhhhhhHH
Q 041521 247 EPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+..+|+...|++++||+|.+.....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56788999999999999999887654
No 63
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=47.28 E-value=4.1 Score=32.93 Aligned_cols=38 Identities=5% Similarity=0.145 Sum_probs=30.1
Q ss_pred ChhhhhhhhhhccccCCCccchhhccCccccceehhhhhh
Q 041521 231 PVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 231 ~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v 270 (524)
+..++++..|. ..|.+..+||..+|+|+++|.+.+...
T Consensus 17 ~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 17 EIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp HHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45667776666 466899999999999999998877654
No 64
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=47.08 E-value=3.8 Score=31.29 Aligned_cols=26 Identities=8% Similarity=0.062 Sum_probs=21.8
Q ss_pred CCCccchhhccCccccceehhhhhhH
Q 041521 246 GEPLRVVSKRFGLGISTCHKLVLEVC 271 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv~~v~ 271 (524)
+.+..+|+..+|+|++||++.+....
T Consensus 25 ~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 25 PVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp CEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45778999999999999998877643
No 65
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=46.99 E-value=2.5 Score=39.89 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=61.6
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCChhhhhhhhhhcccc--------------CCCccchhhc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKN--TMLRDAIPVRQRVAVCVWRLAT--------------GEPLRVVSKR 255 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~--t~~r~~l~~e~rL~i~L~~Lat--------------G~s~~~la~~ 255 (524)
++.+.|...+.-.+.....++..+...+.... .......++++||+-+|..++. ..+..+||..
T Consensus 107 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~ 186 (250)
T 3e6c_C 107 FSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEI 186 (250)
T ss_dssp ECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHH
T ss_pred EcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHH
Confidence 45566666555444443344443333221100 0001356899999999977652 3477889999
Q ss_pred cCccccceehhhhhhHHH-HHhhcccccccCcchHHHHHHHhh
Q 041521 256 FGLGISTCHKLVLEVCSA-IKTVLMPKFLQWPDELKMKQIKEE 297 (524)
Q Consensus 256 FgiS~STvsriv~~v~~a-I~~~L~~~~I~~P~~ee~~~i~~~ 297 (524)
.|+++.||+|++.++... +.+ .....|...+.+.+..++..
T Consensus 187 lG~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~~a~~ 228 (250)
T 3e6c_C 187 TGVHHVTVSRVLASLKRENILD-KKKNKIIVYNLGELKHLSEQ 228 (250)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEE-ECSSEEEESCHHHHHHHHTS
T ss_pred hCCcHHHHHHHHHHHHHCCCeE-eCCCEEEEecHHHHHHHHcc
Confidence 999999999999887643 222 22344555555566555443
No 66
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=46.64 E-value=6.4 Score=32.85 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=25.0
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+++..+|++++||++.+.....
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3789999999999999999999888765
No 67
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=46.20 E-value=3.7 Score=37.28 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccCC--CCCCCCChhhhhhhhhhccc-------cCCCccchhhccCccccc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKNT--MLRDAIPVRQRVAVCVWRLA-------TGEPLRVVSKRFGLGIST 262 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~t--~~r~~l~~e~rL~i~L~~La-------tG~s~~~la~~FgiS~ST 262 (524)
++.+.|...+.-.+..-..+...+...+..... ......++++||+-+|..++ -..+..+||...|+++.|
T Consensus 100 i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~t 179 (216)
T 4ev0_A 100 LFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRET 179 (216)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHH
T ss_pred EcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHH
Confidence 455666666655555444444444432211100 00113468899999997664 234678999999999999
Q ss_pred eehhhhhhHHH-HHhhcccccccCcchHHHHHHHh
Q 041521 263 CHKLVLEVCSA-IKTVLMPKFLQWPDELKMKQIKE 296 (524)
Q Consensus 263 vsriv~~v~~a-I~~~L~~~~I~~P~~ee~~~i~~ 296 (524)
++|++.++.+. +.+ .....|.-++.+.+.+++.
T Consensus 180 vsR~l~~l~~~g~I~-~~~~~i~i~d~~~L~~~a~ 213 (216)
T 4ev0_A 180 VSRVLHALAEEGVVR-LGPGTVEVREAALLEEIAF 213 (216)
T ss_dssp HHHHHHHHHHTTSEE-EETTEEEESCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEE-ecCCEEEEeCHHHHHHHhh
Confidence 99999887542 122 2344455556566655544
No 68
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=46.10 E-value=3.2 Score=31.94 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=19.4
Q ss_pred CCccchhhccCccccceehhhh
Q 041521 247 EPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~ 268 (524)
.+..+|+...|||.+||+++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 3678999999999999999865
No 69
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=45.86 E-value=4.4 Score=32.74 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=24.2
Q ss_pred ccCCCccchhhccCccccceehhhhhhHH
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..+.+..+|+..+|+|++||++.+.....
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45678899999999999999998776543
No 70
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=45.77 E-value=6.6 Score=41.38 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=40.8
Q ss_pred CCChhhhhhhhhhc-cc--cCCCccchhhccCccccceehhhhhhHHHHH
Q 041521 229 AIPVRQRVAVCVWR-LA--TGEPLRVVSKRFGLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 229 ~l~~e~rL~i~L~~-La--tG~s~~~la~~FgiS~STvsriv~~v~~aI~ 275 (524)
.+|..++-.+.|+| |. .|.++..||..+|||..||..+..+....|.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 57889999999988 54 6789999999999999999999888777665
No 71
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=45.31 E-value=3.4 Score=37.87 Aligned_cols=102 Identities=17% Similarity=0.011 Sum_probs=58.8
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccCC--CCCCCCChhhhhhhhhhcccc--------------CCCccchhhc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKNT--MLRDAIPVRQRVAVCVWRLAT--------------GEPLRVVSKR 255 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~t--~~r~~l~~e~rL~i~L~~Lat--------------G~s~~~la~~ 255 (524)
++.+.|...+.-.+..-..+...+...+..... ..-...++++||+-+|..++. ..+..+||..
T Consensus 97 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~ 176 (220)
T 2fmy_A 97 TDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALM 176 (220)
T ss_dssp EEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHH
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHH
Confidence 455666666555544444444433332211000 001235788999999987753 4577899999
Q ss_pred cCccccceehhhhhhHHH-HHhhcc-cccccCcchHHHHHH
Q 041521 256 FGLGISTCHKLVLEVCSA-IKTVLM-PKFLQWPDELKMKQI 294 (524)
Q Consensus 256 FgiS~STvsriv~~v~~a-I~~~L~-~~~I~~P~~ee~~~i 294 (524)
.|+++.|++|++.++.+. +.. .. ...|...+.+.+..+
T Consensus 177 lg~sr~tvsR~l~~l~~~g~I~-~~~~~~i~i~d~~~L~~~ 216 (220)
T 2fmy_A 177 LGTTRQTVSVLLNDFKKMGILE-RVNQRTLLLKDLQKLKEF 216 (220)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEE-ESSSSEEEESCHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHCCCEE-EcCCCEEEEcCHHHHHHH
Confidence 999999999999887542 122 22 234444554544443
No 72
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=45.15 E-value=11 Score=32.84 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=30.1
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 43 glt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 43 EISLPQFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp TCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444 33333333 34788999999999999999998887544
No 73
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=44.90 E-value=12 Score=31.61 Aligned_cols=42 Identities=10% Similarity=0.008 Sum_probs=31.4
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+ ..+.+..+|+..+|++++||++.+.+...
T Consensus 34 ~l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 34 NLSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp TCCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 344444 4455555 67789999999999999999998877554
No 74
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=44.52 E-value=8.3 Score=31.01 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=27.3
Q ss_pred hhhhhhhccccCCCccch----hhccCccccceehhhhhhHH
Q 041521 235 RVAVCVWRLATGEPLRVV----SKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 235 rL~i~L~~LatG~s~~~l----a~~FgiS~STvsriv~~v~~ 272 (524)
.++..|+. ..+.+..+| +..++++++||++++.+...
T Consensus 12 ~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 12 IVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34444433 245778888 99999999999999888665
No 75
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=44.41 E-value=4.7 Score=37.04 Aligned_cols=34 Identities=24% Similarity=0.142 Sum_probs=0.0
Q ss_pred hhhhhhccccCCCccchhhccCccccceehhhhh
Q 041521 236 VAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 236 L~i~L~~LatG~s~~~la~~FgiS~STvsriv~~ 269 (524)
+--...++..|.++..|+..+|||.+|++|++..
T Consensus 148 ~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3334455678999999999999999999998764
No 76
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=43.59 E-value=4.1 Score=32.88 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=22.5
Q ss_pred CCccchhhccCccccceehhhhhhHH
Q 041521 247 EPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+..+|+..++++++||++++.....
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67889999999999999999877544
No 77
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=43.58 E-value=6.5 Score=35.50 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=45.8
Q ss_pred CCChhhhhhhhhhcccc-------------CCCccchhhccCccccceehhhhhhHHH-HHhhcccccccCcchHHHHHH
Q 041521 229 AIPVRQRVAVCVWRLAT-------------GEPLRVVSKRFGLGISTCHKLVLEVCSA-IKTVLMPKFLQWPDELKMKQI 294 (524)
Q Consensus 229 ~l~~e~rL~i~L~~Lat-------------G~s~~~la~~FgiS~STvsriv~~v~~a-I~~~L~~~~I~~P~~ee~~~i 294 (524)
..++++||+-+|..|+. ..+..+||...|+++.||+|++.++... +.. .....|...+.+.+..+
T Consensus 116 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~~ 194 (202)
T 2zcw_A 116 TQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIR-SGYGKIQLLDLKGLKEL 194 (202)
T ss_dssp HCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEESCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE-eCCCEEEEeCHHHHHHH
Confidence 35789999999988753 2466889999999999999999887542 222 22344555555555544
Q ss_pred H
Q 041521 295 K 295 (524)
Q Consensus 295 ~ 295 (524)
+
T Consensus 195 ~ 195 (202)
T 2zcw_A 195 A 195 (202)
T ss_dssp H
T ss_pred h
Confidence 3
No 78
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=43.39 E-value=9.8 Score=31.91 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=30.4
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++.+.+...
T Consensus 30 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 30 DISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 355444 34444433 34678999999999999999998887554
No 79
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=43.31 E-value=5.1 Score=34.28 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.6
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|++++||++.+.....
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3568899999999999999998887654
No 80
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=42.99 E-value=5.9 Score=34.81 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=31.1
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+....+.+..+|+..+|++++|+++++.+...
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 344444 44455555555667789999999999999998877544
No 81
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=42.85 E-value=7.7 Score=36.84 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=37.0
Q ss_pred CCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521 227 RDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI 274 (524)
Q Consensus 227 r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI 274 (524)
...+++.++-.+.| ++.|.+..+||...|||..||...+..+..-+
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 35788888755544 68999999999999999999988887765543
No 82
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=42.80 E-value=3.6 Score=37.88 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=53.8
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccCC--CCCCCCChhhhhhhhhhcccc--------------CCCccchhhc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKNT--MLRDAIPVRQRVAVCVWRLAT--------------GEPLRVVSKR 255 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~t--~~r~~l~~e~rL~i~L~~Lat--------------G~s~~~la~~ 255 (524)
++.+.|...+.-.+..-..++..+...+..... ..-...++++||+-+|..|+. ..+..+||..
T Consensus 107 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~ 186 (227)
T 3d0s_A 107 MDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQL 186 (227)
T ss_dssp EEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHH
T ss_pred EeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHH
Confidence 466777777777766555555554433211100 001245789999998887641 3567899999
Q ss_pred cCccccceehhhhhhHH
Q 041521 256 FGLGISTCHKLVLEVCS 272 (524)
Q Consensus 256 FgiS~STvsriv~~v~~ 272 (524)
.|+++.|++|++.++..
T Consensus 187 lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 187 VGASRETVNKALADFAH 203 (227)
T ss_dssp HTSCHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHH
Confidence 99999999999988654
No 83
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=42.43 E-value=1.4 Score=40.84 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=59.9
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccC-CCCCCCCChh-hhhhhhhhcccc-------------CCCccchhhcc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKN-TMLRDAIPVR-QRVAVCVWRLAT-------------GEPLRVVSKRF 256 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~-t~~r~~l~~e-~rL~i~L~~Lat-------------G~s~~~la~~F 256 (524)
++.+.|...+.-.+..-..++..+...+.... ... ...++. +||+-+|..++. ..+..+||...
T Consensus 107 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~l 185 (231)
T 3e97_A 107 LHREHFELILRRHPRVLWNLAEMLARRVTFLNDELI-AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMART 185 (231)
T ss_dssp ECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHH
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHh
Confidence 46667777666665544444444433221100 000 123566 899999988763 35788999999
Q ss_pred CccccceehhhhhhHHH-HHhhcccccccCcchHHHHHH
Q 041521 257 GLGISTCHKLVLEVCSA-IKTVLMPKFLQWPDELKMKQI 294 (524)
Q Consensus 257 giS~STvsriv~~v~~a-I~~~L~~~~I~~P~~ee~~~i 294 (524)
|+++.|++|++.++... +.+ .....|.-.+.+.+..+
T Consensus 186 g~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~~ 223 (231)
T 3e97_A 186 SSSRETVSRVLKRLEAHNILE-VSPRSVTLLDLAALEAL 223 (231)
T ss_dssp TCCHHHHHHHHHHHHHTTSEE-ECSSCEEESCHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHCCcEE-ecCCEEEEeCHHHHHHH
Confidence 99999999999887542 122 23344555555555443
No 84
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=42.39 E-value=4.9 Score=32.04 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.3
Q ss_pred CCCccchhhccCccccceehhhhhhHH
Q 041521 246 GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+.+..+|+..+|+|++||++.+.....
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578899999999999999998887543
No 85
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.23 E-value=7.6 Score=37.29 Aligned_cols=46 Identities=7% Similarity=0.177 Sum_probs=39.2
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHH
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIK 275 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~ 275 (524)
..+|+.++-.+.|. ..|.++.+||...|+|.+||...+.+....|.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 47899999888885 49999999999999999999888887666553
No 86
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=42.19 E-value=32 Score=28.10 Aligned_cols=79 Identities=13% Similarity=0.016 Sum_probs=47.2
Q ss_pred CCCCHhhHHHHcCCCHHHHHHHHHHhhccc--cc-cCCC-CCCCCChhhhhhhhhhccc--cCCCccchhhcc---C---
Q 041521 190 PDFPEEEFWRDFRMSKATFEMICEELESTV--MK-KNTM-LRDAIPVRQRVAVCVWRLA--TGEPLRVVSKRF---G--- 257 (524)
Q Consensus 190 ~~~~d~~F~~~fRmSr~tF~~Lv~~L~~~i--~~-~~t~-~r~~l~~e~rL~i~L~~La--tG~s~~~la~~F---g--- 257 (524)
..++-.+.-+.|++++.|+...+......- .. .... ....++++..-.+ +.++. ...+...|+..+ |
T Consensus 32 ~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i-~~~~~~~~~~s~~~i~~~l~~~g~~~ 110 (128)
T 1pdn_C 32 DGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRI-EEYKRSSPGMFSWEIREKLIREGVCD 110 (128)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHH-HHTTTTCTTCCHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHH-HHHHHhCcchHHHHHHHHHHHcCCcc
Confidence 356778889999999999998887764321 11 1111 2234555433222 23333 236777888877 7
Q ss_pred ----ccccceehhhhh
Q 041521 258 ----LGISTCHKLVLE 269 (524)
Q Consensus 258 ----iS~STvsriv~~ 269 (524)
+|.+||++++++
T Consensus 111 ~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 111 RSTAPSVSAISRLVRG 126 (128)
T ss_dssp STTCCCHHHHHHHC--
T ss_pred ccCCcCHHHHHHHHHh
Confidence 478888887653
No 87
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=42.07 E-value=6 Score=37.04 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=26.1
Q ss_pred hhccccCCCccchhhccCccccceehhhhh
Q 041521 240 VWRLATGEPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 240 L~~LatG~s~~~la~~FgiS~STvsriv~~ 269 (524)
.+++..|.++.+||..+|||+++|+|.+..
T Consensus 18 a~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 18 MRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 344678999999999999999999998755
No 88
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=42.01 E-value=5.3 Score=32.27 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=21.5
Q ss_pred CCCccchhhccCccccceehhhh
Q 041521 246 GEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv~ 268 (524)
|..+..||...|||++|++.+++
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 99999999999999999998865
No 89
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=41.01 E-value=7.9 Score=32.81 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=31.2
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+.-..+.+..+|+..+|++++||++++.+...
T Consensus 34 ~l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp CCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 344433 44455533455789999999999999999998877544
No 90
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=40.85 E-value=6.4 Score=35.50 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=35.3
Q ss_pred CCChhhhhhhhhhcccc-------------CCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQRVAVCVWRLAT-------------GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~rL~i~L~~Lat-------------G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..++++||+-+|..|+. ..+..+||...|+++.|++|++.++..
T Consensus 137 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 137 FLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp HSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 35789999999988764 235689999999999999999887543
No 91
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=40.77 E-value=6.9 Score=32.44 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=28.0
Q ss_pred hhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 234 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 234 ~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++..|. ..+.+..+|+..+|++++||++.+.....
T Consensus 28 ~~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 28 LQILDLLA--QGERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp HHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34544443 34578899999999999999999887654
No 92
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=40.77 E-value=5.5 Score=31.42 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=28.4
Q ss_pred hhhhhhhhhcccc--CCCccchhhccCccccceehhhhhh
Q 041521 233 RQRVAVCVWRLAT--GEPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 233 e~rL~i~L~~Lat--G~s~~~la~~FgiS~STvsriv~~v 270 (524)
+++++-+|.-.+. +.+..+||..+|++++||.+.+...
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3556655655553 5678999999999999998877654
No 93
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=39.85 E-value=9.4 Score=32.34 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=29.0
Q ss_pred CChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 230 IPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 230 l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 35 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 35 LTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp CCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 44433 33333432 23578899999999999999998877554
No 94
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=38.88 E-value=8.1 Score=34.66 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=45.3
Q ss_pred CCChhhhhhhhhhcccc--C-----------CCccchhhccCccccceehhhhhhHHH-HHhhcccccccCcchHHHHHH
Q 041521 229 AIPVRQRVAVCVWRLAT--G-----------EPLRVVSKRFGLGISTCHKLVLEVCSA-IKTVLMPKFLQWPDELKMKQI 294 (524)
Q Consensus 229 ~l~~e~rL~i~L~~Lat--G-----------~s~~~la~~FgiS~STvsriv~~v~~a-I~~~L~~~~I~~P~~ee~~~i 294 (524)
..++++||+-+|..|+. | .+..+||...|++..||+|++.++... +.. .....|...+.+.+..+
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~-~~~~~i~i~d~~~L~~~ 187 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIA-TAYRRVYLLDLAALERE 187 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE-EETTEEEECCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE-ecCCEEEEeCHHHHHHH
Confidence 46789999999988763 2 366889999999999999999987642 222 22344555555555544
No 95
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=38.75 E-value=8.8 Score=30.73 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=23.9
Q ss_pred CCCccchhhccCccccc-eehhhhhhHH
Q 041521 246 GEPLRVVSKRFGLGIST-CHKLVLEVCS 272 (524)
Q Consensus 246 G~s~~~la~~FgiS~ST-vsriv~~v~~ 272 (524)
+.+..+|+..+|++++| |++.+.+...
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57899999999999999 9999887654
No 96
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=37.68 E-value=7.8 Score=32.71 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=31.2
Q ss_pred CCChhh-hhhhhhhcccc-CCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLAT-GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~Lat-G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+.-.. +.+..+|+..+|++++||++++.+...
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 344443 44555554432 689999999999999999988877544
No 97
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=37.61 E-value=28 Score=29.31 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=29.9
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+ .+|.+..+|+..+|++++||++++.....
T Consensus 35 ~lt~~~~~iL~~l~--~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 35 ALTNTQEHILMLLS--EESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCCHHHHHHHHHHT--TCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--hCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455554 3334443 33489999999999999999998877543
No 98
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=37.39 E-value=7.8 Score=34.80 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=48.9
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccCC--CCCCCCChhhhhhhhhhcccc-------------CCCccchhhcc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKNT--MLRDAIPVRQRVAVCVWRLAT-------------GEPLRVVSKRF 256 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~t--~~r~~l~~e~rL~i~L~~Lat-------------G~s~~~la~~F 256 (524)
++.+.|...+.-.+.....++..+...+..... ......++++|++-+|..|+. ..+..+||...
T Consensus 95 i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l 174 (207)
T 2oz6_A 95 ISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIV 174 (207)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH
T ss_pred ECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHh
Confidence 455666666555554444444443332111000 001235788999988876654 24667899999
Q ss_pred CccccceehhhhhhHH
Q 041521 257 GLGISTCHKLVLEVCS 272 (524)
Q Consensus 257 giS~STvsriv~~v~~ 272 (524)
|+++.|++|++.++.+
T Consensus 175 g~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 175 GCSREMVGRVLKSLEE 190 (207)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999887543
No 99
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=37.35 E-value=7.8 Score=33.34 Aligned_cols=44 Identities=32% Similarity=0.274 Sum_probs=30.0
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+.-..+.+..+|+..++++++||++++.+...
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 344433 34444433333569999999999999999998877543
No 100
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=37.34 E-value=7.2 Score=32.03 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=27.8
Q ss_pred hhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 234 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 234 ~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++..| -..+.+..+|+..+|++++||++.+.....
T Consensus 24 ~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 24 WEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4444444 234578899999999999999998887543
No 101
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=37.01 E-value=5.2 Score=32.98 Aligned_cols=25 Identities=44% Similarity=0.642 Sum_probs=21.7
Q ss_pred cCCCccchhhccCccccceehhhhh
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~ 269 (524)
.+.+..+|+..+|||.+||++.++.
T Consensus 19 ~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 19 TKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3467889999999999999998775
No 102
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=36.99 E-value=10 Score=35.80 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=37.0
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI 274 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI 274 (524)
..+++.++-.+.| ++.|.++.+||...|||.+||...+.+...-+
T Consensus 174 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 174 QMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4688888866554 57999999999999999999988877765544
No 103
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=36.66 E-value=12 Score=35.16 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI 274 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI 274 (524)
..+++.++-++.| ++.|.++.+||...|+|.+||...+.+...-+
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4688888866555 57999999999999999999998887765544
No 104
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=36.66 E-value=16 Score=31.02 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=24.2
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+++..+|+|++||++.+.....
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578899999999999999999887655
No 105
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=36.64 E-value=6.9 Score=33.59 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=23.9
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|++++||++.+.....
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4578899999999999999998887654
No 106
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=36.51 E-value=10 Score=29.54 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=22.6
Q ss_pred CCCccchhhccCccccceehhhhhhHH
Q 041521 246 GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+.+..+|+..+|+|++||++.+.....
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999988776543
No 107
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=36.25 E-value=9.2 Score=30.58 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=24.0
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|++++||++.+.....
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999887654
No 108
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=36.24 E-value=7.5 Score=35.51 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=14.8
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCChhhhhhhhhhcccc-------CCCccchhhccCccccc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKN--TMLRDAIPVRQRVAVCVWRLAT-------GEPLRVVSKRFGLGIST 262 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~--t~~r~~l~~e~rL~i~L~~Lat-------G~s~~~la~~FgiS~ST 262 (524)
++.+.|...+.-.+..-..++..+...+.... ...-...++++||+-+|..++. ..+..+||...|++..|
T Consensus 101 i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~t 180 (213)
T 1o5l_A 101 IPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPA 180 (213)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------------------------------
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHH
Confidence 35556666655444433344443333211100 0001245788999998887763 45788999999999999
Q ss_pred eehhhhhhH
Q 041521 263 CHKLVLEVC 271 (524)
Q Consensus 263 vsriv~~v~ 271 (524)
|+|++.++.
T Consensus 181 vsR~l~~L~ 189 (213)
T 1o5l_A 181 LSRVFQELE 189 (213)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999988764
No 109
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=36.23 E-value=6.7 Score=31.55 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=23.7
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|+|++||++.+.....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3468899999999999999998887644
No 110
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.13 E-value=12 Score=29.03 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCCccchhhcc-----CccccceehhhhhhHH
Q 041521 246 GEPLRVVSKRF-----GLGISTCHKLVLEVCS 272 (524)
Q Consensus 246 G~s~~~la~~F-----giS~STvsriv~~v~~ 272 (524)
+.+..+|+..+ ++|.+||+|.+..+..
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 46778999999 9999999998876554
No 111
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=35.92 E-value=20 Score=31.38 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=28.6
Q ss_pred CCChhh-hhhhhhhcc-ccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRL-ATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~L-atG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+.. ..+.+..+|+..+|++++||++++.....
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 344444 444444444 24789999999999999999998887544
No 112
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=35.64 E-value=14 Score=31.34 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=30.0
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..++++++||++++.+...
T Consensus 33 glt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCCHHHHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 455444 33333332 34678899999999999999998887654
No 113
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=35.51 E-value=5.6 Score=29.52 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.6
Q ss_pred cccCCCccchhhccCccccceehhhh
Q 041521 243 LATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 243 LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
...| ++..++...|+|+++|+++++
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 3457 999999999999999999874
No 114
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=35.45 E-value=10 Score=32.92 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=30.6
Q ss_pred CChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 230 IPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 230 l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+++.+ .++..|+.-..+.+..+|+..+|++++||++.+.+...
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 44433 44444433345788999999999999999998877554
No 115
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=35.36 E-value=14 Score=32.10 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=30.2
Q ss_pred CCChhh-hhhhhhhcccc-CCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLAT-GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~Lat-G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.++..+ .++..|+.-.. +.+..+|+..++++++|+++++.+...
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455544 34444433333 367899999999999999998887544
No 116
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=35.36 E-value=7.2 Score=32.98 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=28.4
Q ss_pred hhhhhhhccc-cCCCccchhhccCccccceehhhhhhHH
Q 041521 235 RVAVCVWRLA-TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 235 rL~i~L~~La-tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.++..|+.-. .+.+..+|+..+|++++||++++.+...
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4444444433 3778999999999999999998887554
No 117
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=35.09 E-value=9.8 Score=30.40 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=26.4
Q ss_pred hhhhhhhhhccc--cCCCccchhhccCccccceehhhhhh
Q 041521 233 RQRVAVCVWRLA--TGEPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 233 e~rL~i~L~~La--tG~s~~~la~~FgiS~STvsriv~~v 270 (524)
+++++-+|.-.+ .+.+..+||..+|||++||.+.+.+.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345555554333 24677899999999999988776654
No 118
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=34.89 E-value=10 Score=34.62 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=49.6
Q ss_pred CCHhhHHHHcCCC-----HHHHHHHHHHhhccccccC--CCCCCCCChhhhhhhhhhccccC-------------CCccc
Q 041521 192 FPEEEFWRDFRMS-----KATFEMICEELESTVMKKN--TMLRDAIPVRQRVAVCVWRLATG-------------EPLRV 251 (524)
Q Consensus 192 ~~d~~F~~~fRmS-----r~tF~~Lv~~L~~~i~~~~--t~~r~~l~~e~rL~i~L~~LatG-------------~s~~~ 251 (524)
++-+.|...+.=. +..-..++..+...+.... .......++++||+-+|..++.. .+..+
T Consensus 113 i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~ 192 (230)
T 3iwz_A 113 ISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQE 192 (230)
T ss_dssp EEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHH
T ss_pred EeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHH
Confidence 3556666665555 4444444444333221100 00012457899999999887642 35789
Q ss_pred hhhccCccccceehhhhhhH
Q 041521 252 VSKRFGLGISTCHKLVLEVC 271 (524)
Q Consensus 252 la~~FgiS~STvsriv~~v~ 271 (524)
||...|+++.||+|++.++.
T Consensus 193 lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 193 LARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp HHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHH
Confidence 99999999999999987754
No 119
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=34.84 E-value=13 Score=31.55 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=30.0
Q ss_pred CCChhhh-hhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQR-VAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~r-L~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+- ++..|+. ..+.+..+|+..+|++++|+++++.+...
T Consensus 28 ~lt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 28 DLNYNLFAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp TCCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4554443 3333332 34688999999999999999998877544
No 120
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=34.31 E-value=7.8 Score=34.38 Aligned_cols=44 Identities=7% Similarity=0.094 Sum_probs=31.8
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+....+.+..+|+..++++++||++++.+...
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 455444 34444544455688999999999999999998877544
No 121
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=34.13 E-value=8.7 Score=35.83 Aligned_cols=43 Identities=7% Similarity=0.019 Sum_probs=36.7
Q ss_pred CCCCChhhhhhhhhhccccC--CCccchhhccCccccceehhhhh
Q 041521 227 RDAIPVRQRVAVCVWRLATG--EPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 227 r~~l~~e~rL~i~L~~LatG--~s~~~la~~FgiS~STvsriv~~ 269 (524)
.+.+|..++=.-.+..|..| .++..+|.++|||++.|+|++.-
T Consensus 21 ~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 46788899888888888877 89999999999999999999764
No 122
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=34.11 E-value=11 Score=32.39 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=30.4
Q ss_pred CCChhhh-hhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQR-VAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~r-L~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+- ++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 44 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4555443 4444433 35678899999999999999998876544
No 123
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=34.10 E-value=12 Score=31.42 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=30.3
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 26 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 26 NLTDAQVACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp TCCHHHHHHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344443 34444433 35678999999999999999998877554
No 124
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=33.96 E-value=11 Score=32.16 Aligned_cols=44 Identities=16% Similarity=0.047 Sum_probs=30.6
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+.-..+.+..+|+..+|++++||++++.+...
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 344443 33444433245689999999999999999998877554
No 125
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=33.72 E-value=14 Score=31.65 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..++++++||++++.....
T Consensus 38 ~lt~~q~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 38 GITYSQYLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp TCCHHHHHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444 33333332 35678999999999999999998887544
No 126
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=33.68 E-value=39 Score=33.12 Aligned_cols=235 Identities=11% Similarity=0.022 Sum_probs=110.6
Q ss_pred hhHHHHcC---CCHHHHHHHHHHhhcc---ccccCCCCCC-CCChhhhhhhhhhccccCCCccchhhccCccccceehhh
Q 041521 195 EEFWRDFR---MSKATFEMICEELEST---VMKKNTMLRD-AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLV 267 (524)
Q Consensus 195 ~~F~~~fR---mSr~tF~~Lv~~L~~~---i~~~~t~~r~-~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv 267 (524)
..+.+.|+ +++.|+...+.....- +......+++ .++. ++|.-.+ .-....+++.|+..++||.+||++++
T Consensus 30 ~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~-~~i~~~v-~~~~~~t~~~ia~~l~vs~~tV~r~L 107 (345)
T 3hot_A 30 RMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED-AELQALL-DEDDAQTQKQLAEQLEVSQQAVSNRL 107 (345)
T ss_dssp HHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH-HHHHHHH-HHCSCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH-HHHHHHH-HhCccchHHHHHHHHCCCHHHHHHHH
Confidence 34556677 9999999998876541 1111122233 3433 3332222 22344678899999999999999998
Q ss_pred hhhHHHHHhhccccccc-CcchH---HHHHHHhhhcc---ccCCCccccCCcceeeeEecCCCccccccccc-----ccc
Q 041521 268 LEVCSAIKTVLMPKFLQ-WPDEL---KMKQIKEEFQG---ISGIPNVGGSMYTTHIPIIAPKISVASYFNKR-----HTE 335 (524)
Q Consensus 268 ~~v~~aI~~~L~~~~I~-~P~~e---e~~~i~~~F~~---~~gfP~~vGaIDgThIpI~~P~~~~~~y~n~~-----~~~ 335 (524)
++. . +... .+..+. .-+.. .....+..... ...+++-+-++|-+.+....+... ..+..+ ...
T Consensus 108 ~~~-g-~~~k-~~~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~~--~~w~~~g~~~~~~~ 182 (345)
T 3hot_A 108 REM-G-KIQK-VGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRK--KSYVDPGQPATSTA 182 (345)
T ss_dssp HHT-T-CEEE-ECCEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCCC--EEEECSSSCCCCEE
T ss_pred HHh-C-Ceee-ccccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEEecCccce--eeeccCCCCCCCCc
Confidence 872 1 1110 111111 00111 11111211111 123667777888888775422110 001100 000
Q ss_pred ccCCCCccccccccccCCCceeeecCCCCCCCCChHHHHhHHHHhh---hhccc------cceEEEEcccCCCCcccccc
Q 041521 336 RNQKTSYSITVQGVVDTKGVFTDVCIGWPGSMPDDQVLERSALFQR---ADRGL------LKDVWIVGNSGYPLMDWVMV 406 (524)
Q Consensus 336 rn~K~~~Si~vq~v~D~~g~fi~v~~g~pGS~hDs~V~~~S~L~~~---l~~~~------~~g~~lLGD~gYpl~~~Lmt 406 (524)
....+..++.+.++.+..|.+.++...-.|++ ++..+.+- |.+. +.... ..+.+++-|.|-+-....+.
T Consensus 183 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~~~y~~~-L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~h~~~~~~ 260 (345)
T 3hot_A 183 RPNRFGKKTMLCVWWDQSGVIYYELLKPGETV-NAARYQQQ-LINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVR 260 (345)
T ss_dssp CCCTTCCEEEEEEEEESSSEEEEEEECSSCCC-CHHHHHHH-HHHHHHHHHHHSTTCC---CCCEEECCCCTTTTSHHHH
T ss_pred CccCcCCcEEEEEEEcccCceeeEecCCCCcc-cHHHHHHH-HHHHHHHHHHhchhhhcCCCceEEEECCCCccccHHHH
Confidence 00112335667788888997655554322344 46555532 2221 11111 12557888876543221111
Q ss_pred ccc-cCCcccchhhcccccccchhhhh-hcccccccc
Q 041521 407 PYT-QKNLTWTQHAFNEKIGDIQAVAK-DAFARLKGR 441 (524)
Q Consensus 407 Py~-~~~lt~~q~~FN~~ls~~R~~VE-~aFG~LK~R 441 (524)
-+- .... +..|--..|.--+.+| +.|+.||..
T Consensus 261 ~~l~~~~~---~~~~~p~~spdlnpie~~~~~~lk~~ 294 (345)
T 3hot_A 261 DTLETLNW---EVLPHAAYSPDLAPSDYHLFASMGHA 294 (345)
T ss_dssp HHHHHTTC---EECCCCTTCGGGCHHHHTHHHHHHHH
T ss_pred HHHHHcCc---EeccCCCCCCCcccccchhhHHHHHH
Confidence 000 0000 0111112233445788 888999853
No 127
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=33.65 E-value=9.5 Score=32.00 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=33.2
Q ss_pred hhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 234 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 234 ~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.|+.+.......+.++.+.+.+|+||.+++.++...+..
T Consensus 38 rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 38 RKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 488888999999999999999999999998877665543
No 128
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=33.35 E-value=9.6 Score=34.88 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=35.9
Q ss_pred CCChhhhhhhhhhcccc--------------CCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQRVAVCVWRLAT--------------GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~rL~i~L~~Lat--------------G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..++++||+-+|..++. ..+..+||...|+++.||+|++.++..
T Consensus 132 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 132 FHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp THHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 35788999999987762 246788999999999999999888653
No 129
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=33.24 E-value=20 Score=31.08 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=28.2
Q ss_pred hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 235 RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 235 rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.++..|+. ..|.+..+|+..+|++++||++++.+...
T Consensus 54 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 54 PFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444433 35678999999999999999998887654
No 130
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=33.19 E-value=14 Score=31.82 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=18.3
Q ss_pred CccchhhccCccccceehhhhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~v 270 (524)
+.+.|+..||||++||.+.+...
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L 52 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLL 52 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 34589999999999988776653
No 131
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=33.15 E-value=12 Score=31.82 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=30.6
Q ss_pred CCChhhh-hhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQR-VAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~r-L~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+- ++..|+. ..+.+..+|+..+|++++||++.+.+...
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555443 3334433 23788899999999999999998887654
No 132
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=33.10 E-value=12 Score=31.33 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=30.7
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++.+.+...
T Consensus 35 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp CCCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455444 34444443 23788999999999999999998877554
No 133
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=32.93 E-value=12 Score=36.20 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=35.6
Q ss_pred CCChhhhhhhhhhccc---cCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQRVAVCVWRLA---TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~rL~i~L~~La---tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.++.-++.+-.|..|+ .+.+..+|+...|+++||++|++.....
T Consensus 18 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 18 GVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566667777777776 3678999999999999999999887655
No 134
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=32.88 E-value=21 Score=33.60 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhhccccccCCCCCCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhh
Q 041521 203 MSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 203 mSr~tF~~Lv~~L~~~i~~~~t~~r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~ 269 (524)
|+....+.+.+.|...|....-.....+|. -+.|+..||||+++|...+..
T Consensus 1 m~~~l~~~v~~~L~~~I~~g~l~pG~~Lps----------------E~~La~~lgVSRtpVREAL~~ 51 (239)
T 2di3_A 1 MSVKAHESVMDWVTEELRSGRLKIGDHLPS----------------ERALSETLGVSRSSLREALRV 51 (239)
T ss_dssp -CHHHHHHHHHHHHHHHHHTSSCTTCBCCC----------------HHHHHHHHTCCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCCCcCCC----------------HHHHHHHHCCCHHHHHHHHHH
Confidence 566666677777766554321111122322 247999999999998766554
No 135
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=32.85 E-value=14 Score=30.28 Aligned_cols=27 Identities=4% Similarity=0.041 Sum_probs=22.6
Q ss_pred CCCccchhhccCccccceehhhhhhHH
Q 041521 246 GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..+..+|+..+|+|++||++.+.....
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999988776543
No 136
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=32.71 E-value=17 Score=33.24 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=57.8
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccCC--CCCCCCChhhhhhhhhhccc-------------cCCCccchhhcc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKNT--MLRDAIPVRQRVAVCVWRLA-------------TGEPLRVVSKRF 256 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~t--~~r~~l~~e~rL~i~L~~La-------------tG~s~~~la~~F 256 (524)
++-+.|...+.-.+..-..+...+...+..... ..-...++++||+-+|..|+ -..+..+||...
T Consensus 111 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l 190 (232)
T 2gau_A 111 IPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLS 190 (232)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHT
T ss_pred EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHh
Confidence 455566666555555444444444332211000 00123578999998885543 234678999999
Q ss_pred CccccceehhhhhhHHH-HHhhcccccccCcchHHHHHH
Q 041521 257 GLGISTCHKLVLEVCSA-IKTVLMPKFLQWPDELKMKQI 294 (524)
Q Consensus 257 giS~STvsriv~~v~~a-I~~~L~~~~I~~P~~ee~~~i 294 (524)
|+++.|++|++.++... +.. .....|...+.+.+..+
T Consensus 191 g~sr~tvsR~l~~l~~~g~I~-~~~~~i~i~d~~~L~~~ 228 (232)
T 2gau_A 191 NMTVSNAIRTLSTFVSERMLA-LDGKRIKIIDCDRLQKT 228 (232)
T ss_dssp TSCHHHHHHHHHHHHHTTSEE-EETTEEEESCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEe-eCCCEEEEeCHHHHHHH
Confidence 99999999999887532 111 22334555555555443
No 137
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=32.57 E-value=14 Score=31.60 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=22.1
Q ss_pred hhhhhhhccc-cCCCccchhhccCccccceehhhhhhHH
Q 041521 235 RVAVCVWRLA-TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 235 rL~i~L~~La-tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.++..|+.-. .+.+..+|+..+|++++||++++.+...
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3444444322 4678899999999999999998887654
No 138
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=32.44 E-value=10 Score=31.84 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=27.4
Q ss_pred hhhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 234 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 234 ~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++..|. ..+.+..+|+..+|+|++||++.+.....
T Consensus 21 ~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 21 RAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp HHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34444443 34568899999999999999999877544
No 139
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=32.23 E-value=7.3 Score=30.35 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=28.8
Q ss_pred hhhhhhhhhhccccCCCccchhhccC----ccccceehhhhhhHH
Q 041521 232 VRQRVAVCVWRLATGEPLRVVSKRFG----LGISTCHKLVLEVCS 272 (524)
Q Consensus 232 ~e~rL~i~L~~LatG~s~~~la~~Fg----iS~STvsriv~~v~~ 272 (524)
.+..++.+||. ..+.+..+|+..++ ++.+||++++.....
T Consensus 10 ~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 10 AELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp HHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 34456666766 45678899999886 688998887776443
No 140
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=32.22 E-value=17 Score=31.28 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=29.8
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 40 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 40 GLRVPEWRVLACLVD-NDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp TCCHHHHHHHHHHSS-CSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444 33333332 34678999999999999999998877544
No 141
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=32.13 E-value=9.8 Score=30.14 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhhccccccCCCCCCCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhH
Q 041521 203 MSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVC 271 (524)
Q Consensus 203 mSr~tF~~Lv~~L~~~i~~~~t~~r~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~ 271 (524)
|++.....|++.|...+.... +...+.++|++.||+|.+||.+.+....
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~--------------------g~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDD--------------------GAPVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHT--------------------TSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcc--------------------CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666677777765433210 1223567999999999999888766543
No 142
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=31.80 E-value=11 Score=34.76 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=33.3
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhh
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
..+++-++.......+..|.+...|+..+|+|+++|++++.
T Consensus 34 edL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46777777666667777799999999999999999988743
No 143
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=31.78 E-value=14 Score=36.02 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=40.4
Q ss_pred CCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHHHhhcc
Q 041521 229 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLM 279 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L~ 279 (524)
.+|+.+|-++.|.++ .|.++.++|...|++.+||...+.+....+...+.
T Consensus 111 ~Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 111 RIAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp HHSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred hCCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 467778877777666 68899999999999999998888887777766543
No 144
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=31.72 E-value=15 Score=31.55 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=29.6
Q ss_pred CChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 230 IPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 230 l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+++.+ .++.+| -..+.+..+|+..+|++++||++.+.....
T Consensus 36 lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 36 ISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp CCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44443 334444 445688999999999999999998877544
No 145
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=31.68 E-value=11 Score=34.31 Aligned_cols=81 Identities=11% Similarity=0.167 Sum_probs=50.0
Q ss_pred CCHhhHHHHcCCCHHHHHHHHHHhhccccccC--CCCCCCCChhhhhhhhhhcccc-----------CCCccchhhccCc
Q 041521 192 FPEEEFWRDFRMSKATFEMICEELESTVMKKN--TMLRDAIPVRQRVAVCVWRLAT-----------GEPLRVVSKRFGL 258 (524)
Q Consensus 192 ~~d~~F~~~fRmSr~tF~~Lv~~L~~~i~~~~--t~~r~~l~~e~rL~i~L~~Lat-----------G~s~~~la~~Fgi 258 (524)
++.+.|...+.-.+..-..++..+...+.... .......++++||+-+|..++. ..+..+||...|+
T Consensus 111 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~ 190 (227)
T 3dkw_A 111 FSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSI 190 (227)
T ss_dssp EESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTS
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCC
Confidence 34566666666665554445444443221100 0001134678899888766543 3467899999999
Q ss_pred cccceehhhhhhHH
Q 041521 259 GISTCHKLVLEVCS 272 (524)
Q Consensus 259 S~STvsriv~~v~~ 272 (524)
++.|++|++.++..
T Consensus 191 sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 191 QPETFSRIMHRLGD 204 (227)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887654
No 146
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=31.46 E-value=11 Score=31.74 Aligned_cols=28 Identities=11% Similarity=-0.057 Sum_probs=23.7
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|+|++||++.+.....
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578889999999999999999887543
No 147
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=31.30 E-value=11 Score=36.02 Aligned_cols=42 Identities=7% Similarity=0.138 Sum_probs=31.4
Q ss_pred Chhhhhhhhhhcccc---CCCccchhhccCccccceehhhhhhHH
Q 041521 231 PVRQRVAVCVWRLAT---GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 231 ~~e~rL~i~L~~Lat---G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+.-++.+-.|..|+. +.+..+|+..+|+++||++|++.....
T Consensus 5 ~sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 5 NTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp TTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334455555555543 578899999999999999999887654
No 148
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=31.10 E-value=14 Score=30.14 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=32.7
Q ss_pred CCCCChhhhhhhhhhcc--ccCCCccchhhccCccccceehhhhhhH
Q 041521 227 RDAIPVRQRVAVCVWRL--ATGEPLRVVSKRFGLGISTCHKLVLEVC 271 (524)
Q Consensus 227 r~~l~~e~rL~i~L~~L--atG~s~~~la~~FgiS~STvsriv~~v~ 271 (524)
-..+++++.+.+.+-+- ..|...++|+...+++++||.+++....
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34676666654444333 2389999999999999999988877653
No 149
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=30.83 E-value=21 Score=31.75 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=31.7
Q ss_pred CCChh-hhhhhhhhcccc--CCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVR-QRVAVCVWRLAT--GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e-~rL~i~L~~Lat--G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++. -.++..|+.-.. |.+..+|+..+|++++||++.+.+...
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34443 345555554433 389999999999999999999887654
No 150
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.70 E-value=11 Score=31.58 Aligned_cols=28 Identities=0% Similarity=-0.139 Sum_probs=23.7
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|++++||++++.+...
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3578899999999999999998877554
No 151
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=30.61 E-value=12 Score=33.23 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=28.1
Q ss_pred hhhhhhhhccccCCCccchhhccCccccceehhhhhhHHH
Q 041521 234 QRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSA 273 (524)
Q Consensus 234 ~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~a 273 (524)
.+++..|. ..+.+..+|+..+|++++||++.+.....+
T Consensus 61 ~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 61 RRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp HHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444443 455788999999999999999998876543
No 152
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=30.46 E-value=11 Score=34.66 Aligned_cols=32 Identities=25% Similarity=0.194 Sum_probs=0.0
Q ss_pred hccccCCCccchhhccCccccceehhhhhhHH
Q 041521 241 WRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 241 ~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..+..|.+...|+..+|+|.+|+++++...-.
T Consensus 153 ~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 153 RLLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp --------------------------------
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 34567999999999999999999998776433
No 153
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=30.25 E-value=15 Score=35.32 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=34.4
Q ss_pred CCChhhhhhhhhhcccc---CCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQRVAVCVWRLAT---GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~rL~i~L~~Lat---G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.++.-++.+-.|..|+. +.+..+|+..+|+++|||+|++.....
T Consensus 9 ~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 9 YIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45555666666777763 578899999999999999999887654
No 154
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=30.19 E-value=11 Score=36.90 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCccchhhccCccccceehhhhh
Q 041521 247 EPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~~ 269 (524)
.+.++||...|||.+||||+++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 36789999999999999999875
No 155
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=30.18 E-value=12 Score=31.71 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=30.1
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 26 ~lt~~~~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp TCTTTHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 344444 34444443 34678999999999999999998877544
No 156
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=30.06 E-value=11 Score=36.84 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=0.0
Q ss_pred CccchhhccCccccceehhhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~ 269 (524)
+.++||...|||.+||||+++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5789999999999999999875
No 157
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=29.87 E-value=19 Score=30.67 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=30.0
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 37 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp TCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444 34444433 34678999999999999999998877544
No 158
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=29.81 E-value=8.2 Score=29.58 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.7
Q ss_pred CCccchhhccCccccceehhhh
Q 041521 247 EPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~ 268 (524)
.++..+|+.+||++++||++++
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 3999999999999999999763
No 159
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=29.63 E-value=11 Score=36.91 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCccchhhccCccccceehhhhh
Q 041521 247 EPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~~ 269 (524)
.+.++||...|||.+||||+++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999864
No 160
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=29.54 E-value=13 Score=35.17 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=32.9
Q ss_pred Chhhhhhhhhhccc-cCCCc--cchhhccCccccceehhhhhhHH
Q 041521 231 PVRQRVAVCVWRLA-TGEPL--RVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 231 ~~e~rL~i~L~~La-tG~s~--~~la~~FgiS~STvsriv~~v~~ 272 (524)
+..+.++-+||.|. .|.+. .+|+..+|++++|+++.+.+...
T Consensus 6 ~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~ 50 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMER 50 (230)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566777787775 36677 99999999999999998877543
No 161
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.46 E-value=14 Score=31.27 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=29.9
Q ss_pred CChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 230 IPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 230 l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 31 l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 31 ITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp CCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 44433 34444443 34678999999999999999998877554
No 162
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=29.43 E-value=14 Score=29.90 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=23.6
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|+|++||++.+.....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4478899999999999999998877544
No 163
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=29.38 E-value=15 Score=31.20 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=31.0
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.....
T Consensus 39 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 39 PITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 455444 34444443 34689999999999999999998877554
No 164
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=29.23 E-value=12 Score=37.16 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=0.0
Q ss_pred CccchhhccCccccceehhhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~ 269 (524)
+.++||...|||.+||||+++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 5789999999999999999875
No 165
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=29.10 E-value=12 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.8
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|.++..||...|||++|++++..
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5688999999999999999987633
No 166
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=29.10 E-value=12 Score=36.72 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=0.0
Q ss_pred CccchhhccCccccceehhhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~ 269 (524)
+.++||...|||.+||||+++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 5789999999999999999875
No 167
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=29.10 E-value=10 Score=36.14 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=29.7
Q ss_pred hhhhhhhhcccc---CCCccchhhccCccccceehhhhhhHH
Q 041521 234 QRVAVCVWRLAT---GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 234 ~rL~i~L~~Lat---G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
++.+-.|..|+. +.+..+|+..+|+++||++|++.....
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444455555543 467899999999999999999887654
No 168
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=29.01 E-value=12 Score=36.86 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCccchhhccCccccceehhhhh
Q 041521 247 EPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~~ 269 (524)
.+.++||...|||.+||||+++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999873
No 169
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.99 E-value=53 Score=28.13 Aligned_cols=79 Identities=9% Similarity=0.009 Sum_probs=47.4
Q ss_pred CCCCHhhHHHHcCCCHHHHHHHHHHhhcc--ccccCCCC--CCCCChhhhhhhhhhccc--cCCCccchhhcc-------
Q 041521 190 PDFPEEEFWRDFRMSKATFEMICEELEST--VMKKNTML--RDAIPVRQRVAVCVWRLA--TGEPLRVVSKRF------- 256 (524)
Q Consensus 190 ~~~~d~~F~~~fRmSr~tF~~Lv~~L~~~--i~~~~t~~--r~~l~~e~rL~i~L~~La--tG~s~~~la~~F------- 256 (524)
..++-.+.-+.|++++.|+...+...... +......+ ...++.+..-.+ +.++. ...+...|+..+
T Consensus 47 ~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I-~~~~~~~~~~s~~~i~~~l~~~~~~~ 125 (149)
T 1k78_A 47 QGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKI-AEYKRQNPTMFAWEIRDRLLAERVCD 125 (149)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHH-HHHHHHCTTCCHHHHHHHHHHTTSSC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHH-HHHHHhCcchhHHHHHHHHHHhcccc
Confidence 35677888899999999999888765432 11111112 234555433222 22332 235667777766
Q ss_pred -C--ccccceehhhhh
Q 041521 257 -G--LGISTCHKLVLE 269 (524)
Q Consensus 257 -g--iS~STvsriv~~ 269 (524)
| +|.+||++++.+
T Consensus 126 ~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 126 NDTVPSVSSINRIIRT 141 (149)
T ss_dssp TTTSCCHHHHHHHHHC
T ss_pred cCCCcCHHHHHHHHHH
Confidence 5 788888887664
No 170
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=28.94 E-value=12 Score=33.85 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=31.1
Q ss_pred CChhh-hhhhhhhcc-ccCCCccchhhccCccccceehhhhhhHH
Q 041521 230 IPVRQ-RVAVCVWRL-ATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 230 l~~e~-rL~i~L~~L-atG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+++.+ .++..|+.. ..+.+..+|+..+|++++||++++.....
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444 444555544 34789999999999999999998776543
No 171
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=28.81 E-value=12 Score=31.77 Aligned_cols=43 Identities=9% Similarity=-0.030 Sum_probs=30.7
Q ss_pred CCChhhh-hhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQR-VAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~r-L~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+- ++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 34 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA-NEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSCHHHHHHHHHHHH-HSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 4555553 3333332 35788999999999999999998887554
No 172
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=28.74 E-value=13 Score=32.23 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=26.8
Q ss_pred hhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 236 VAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 236 L~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 57 iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 57 ALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp HHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3444433 34578899999999999999998877544
No 173
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=28.73 E-value=31 Score=33.28 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=36.4
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhhhhHHHH
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAI 274 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI 274 (524)
..+++.++-.+.| ++.|.++.+||...|||..||..++..+..-+
T Consensus 196 ~~Lt~re~~vl~~--~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHW--MSRGKTNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4688888765554 47999999999999999999998887765544
No 174
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=28.66 E-value=15 Score=30.86 Aligned_cols=28 Identities=4% Similarity=-0.011 Sum_probs=23.7
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|++++||++.+.+...
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678899999999999999998877544
No 175
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=28.64 E-value=12 Score=37.00 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=0.0
Q ss_pred CccchhhccCccccceehhhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~ 269 (524)
+.++||...|||.+||||+++.
T Consensus 5 ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 5 TLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp ----------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 5789999999999999999875
No 176
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=28.46 E-value=10 Score=37.06 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.8
Q ss_pred CccchhhccCccccceehhhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~ 269 (524)
+.++||...|||.+||||+++.
T Consensus 4 ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 4 TIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 5789999999999999999874
No 177
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=28.44 E-value=12 Score=35.41 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCChhhhhhhhhhccccC-------------CCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQRVAVCVWRLATG-------------EPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~rL~i~L~~LatG-------------~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..++++||+-+|..|+.. .+..+||...|+++.||+|++.++.+
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 357899999988777532 35678999999999999999887543
No 178
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=27.98 E-value=9.2 Score=30.37 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=23.9
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|++++||++.+.....
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578899999999999999999887654
No 179
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=27.95 E-value=13 Score=36.89 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred CccchhhccCccccceehhhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~ 269 (524)
+.++||...|||.+||||+++.
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHCC
Confidence 5689999999999999999873
No 180
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=27.92 E-value=17 Score=31.38 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=27.5
Q ss_pred hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 235 RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 235 rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 53 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 53 RVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp HHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444443 34678889999999999999998877544
No 181
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=27.74 E-value=12 Score=31.63 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=30.6
Q ss_pred CCChhh-hhhhhhhccc-cCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLA-TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~La-tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+.-. .+.+..+|+..++++++|+++++.....
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344443 4445554421 4578899999999999999998877544
No 182
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=27.72 E-value=16 Score=31.52 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=29.5
Q ss_pred CChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 230 IPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 230 l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 42 lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 42 MKTTELYAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp SBHHHHHHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44433 34444433 23678999999999999999998877654
No 183
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=27.63 E-value=16 Score=30.65 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=30.1
Q ss_pred CCChhhh-hhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQR-VAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~r-L~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+. ++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 31 ~lt~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 31 DITAAQFKVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp TSCHHHHHHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4554443 3334432 34678999999999999999998877554
No 184
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=27.50 E-value=13 Score=31.59 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++.+.+...
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 455444 33444433 23678899999999999999998877554
No 185
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=27.48 E-value=9.9 Score=28.98 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred ccccCCCccchhhccCccccceehhhh
Q 041521 242 RLATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 242 ~LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
+-..|.++.++|...|||.+|++++-+
T Consensus 20 R~~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 20 RKKLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 445789999999999999999998743
No 186
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=27.43 E-value=14 Score=35.60 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=34.5
Q ss_pred CCChhhhhhhhhhcccc---CCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQRVAVCVWRLAT---GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~rL~i~L~~Lat---G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.++.-++.+-.|..|+. +.+..+|+...|+++||++|++.....
T Consensus 16 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~ 62 (265)
T 2ia2_A 16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE 62 (265)
T ss_dssp CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45556666666777763 567899999999999999999887654
No 187
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=27.42 E-value=10 Score=37.16 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.5
Q ss_pred CccchhhccCccccceehhhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~ 269 (524)
+.++||...|||.+||||+++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 4679999999999999999874
No 188
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=27.38 E-value=56 Score=27.47 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=48.1
Q ss_pred hcHHHHHHHhhc--ccHHHHHHHHHHhhhhhhhhhhhhhhcchhhhhhhHHHHhhhhhcccc
Q 041521 62 AAWSDILTSLIL--LDEEEKREQQQYSIHSHQDKLLVDDNHKRKEQAMNDYFHQLQDHYTDL 121 (524)
Q Consensus 62 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (524)
.++..||-.|+. |.+|+.+.+.+..+...+.+.||+.=-++-..+-.-|++-|++.++.|
T Consensus 34 ~~V~~ILD~Ll~~VLteee~e~I~ae~T~q~k~R~Lld~v~~kG~~A~~~F~~~L~e~dp~L 95 (107)
T 3kat_A 34 TSVEVVLDKLHGQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHL 95 (107)
T ss_dssp CCHHHHHHHHTTTTSCHHHHHHHHHCCSHHHHHHHHHHGGGGCCTTHHHHHHHHHHHHCHHH
T ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhCCCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCHHH
Confidence 378888888875 899999999988888888999998766666667778888887766554
No 189
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=26.94 E-value=15 Score=31.55 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=30.4
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 38 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 38 GLTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444 34444443 24578999999999999999998877544
No 190
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=26.80 E-value=13 Score=32.92 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=0.5
Q ss_pred CChhhhhhhhhhccc---cCCCccchhhccCccccceehhhhhh
Q 041521 230 IPVRQRVAVCVWRLA---TGEPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 230 l~~e~rL~i~L~~La---tG~s~~~la~~FgiS~STvsriv~~v 270 (524)
.++++|++-+|..+. ...+..+||...|+++.|++|++.+.
T Consensus 149 ~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l 192 (194)
T 3dn7_A 149 YSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKY 192 (194)
T ss_dssp C-------------------------------------------
T ss_pred CCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhh
Confidence 467778887776654 35678999999999999999998764
No 191
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=26.72 E-value=12 Score=29.19 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=32.1
Q ss_pred ChhhhhhhhhhccccC-CCccchhhccCccccceehhhhh
Q 041521 231 PVRQRVAVCVWRLATG-EPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 231 ~~e~rL~i~L~~LatG-~s~~~la~~FgiS~STvsriv~~ 269 (524)
=-+++|..++.-+..| .+....+..|||..+|+..-|..
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 4567788888888889 79999999999999998765544
No 192
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=26.43 E-value=40 Score=28.67 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHhhccccccCCCCCCCCChhhhhhhhh-hccccCCCccchhhccCccccceehhhhhh
Q 041521 202 RMSKATFEMICEELESTVMKKNTMLRDAIPVRQRVAVCV-WRLATGEPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 202 RmSr~tF~~Lv~~L~~~i~~~~t~~r~~l~~e~rL~i~L-~~LatG~s~~~la~~FgiS~STvsriv~~v 270 (524)
.|+.+.|..|+++- +|..+ ++..+| -+|-.|.+-..++.++||+++-.++.+.++
T Consensus 29 ~vsee~F~LLlelS-------------~IrSe-kII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL 84 (111)
T 3m8j_A 29 SMSEEQFFLLIGIS-------------SIHSD-RVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRL 84 (111)
T ss_dssp CSCHHHHHHHHHHS-------------CCCCH-HHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHC-------------CCCCH-HHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHH
Confidence 36777777777642 22233 444445 688999999999999999999998887653
No 193
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=26.37 E-value=11 Score=28.88 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.9
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..| ++.++|...|||++||+++.+
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHH
Confidence 357 899999999999999998855
No 194
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=26.27 E-value=11 Score=36.95 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.0
Q ss_pred CCccchhhccCccccceehhhhh
Q 041521 247 EPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~~ 269 (524)
.+.++||...|||.+||||+++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 35789999999999999998764
No 195
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=26.17 E-value=15 Score=35.33 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=32.0
Q ss_pred hhhhhhhhhhcccc---CCCccchhhccCccccceehhhhhhHHH
Q 041521 232 VRQRVAVCVWRLAT---GEPLRVVSKRFGLGISTCHKLVLEVCSA 273 (524)
Q Consensus 232 ~e~rL~i~L~~Lat---G~s~~~la~~FgiS~STvsriv~~v~~a 273 (524)
.-+|.+-.|..|+. +.+..+|+...|+++||++|++......
T Consensus 4 sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~ 48 (260)
T 3r4k_A 4 TVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA 48 (260)
T ss_dssp HHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34455556666663 4678899999999999999998876553
No 196
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=26.10 E-value=13 Score=27.13 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=19.6
Q ss_pred CCCccchhhcc-----Cccccceehhhh
Q 041521 246 GEPLRVVSKRF-----GLGISTCHKLVL 268 (524)
Q Consensus 246 G~s~~~la~~F-----giS~STvsriv~ 268 (524)
..+..+|+..+ +||.+||+|.+.
T Consensus 19 ~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 19 IETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 35667889999 999999999887
No 197
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=25.76 E-value=14 Score=34.22 Aligned_cols=66 Identities=6% Similarity=0.010 Sum_probs=43.9
Q ss_pred CCChhhhhhhhhhccc--------------c-CCCccchhhccCcccc-ceehhhhhhHHH-HHhhcccccccCcchHHH
Q 041521 229 AIPVRQRVAVCVWRLA--------------T-GEPLRVVSKRFGLGIS-TCHKLVLEVCSA-IKTVLMPKFLQWPDELKM 291 (524)
Q Consensus 229 ~l~~e~rL~i~L~~La--------------t-G~s~~~la~~FgiS~S-Tvsriv~~v~~a-I~~~L~~~~I~~P~~ee~ 291 (524)
..++++||+-+|..|+ - ..+..+||...|++++ ||+|++.++.+. +.. .....|...+.+.+
T Consensus 137 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~-~~~~~i~I~d~~~L 215 (238)
T 2bgc_A 137 INGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV-YKNSCFYVQNLDYL 215 (238)
T ss_dssp TTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE-EETTEEEESCHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE-ecCCEEEEeCHHHH
Confidence 3578899999887654 1 4567899999999995 999999887542 222 12334555555555
Q ss_pred HHHH
Q 041521 292 KQIK 295 (524)
Q Consensus 292 ~~i~ 295 (524)
..++
T Consensus 216 ~~~~ 219 (238)
T 2bgc_A 216 KRYA 219 (238)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 4443
No 198
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=25.48 E-value=9.6 Score=31.73 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=28.4
Q ss_pred hhhhhhhhccccCCCccchhhccC----ccccceehhhhhhHH
Q 041521 234 QRVAVCVWRLATGEPLRVVSKRFG----LGISTCHKLVLEVCS 272 (524)
Q Consensus 234 ~rL~i~L~~LatG~s~~~la~~Fg----iS~STvsriv~~v~~ 272 (524)
..++.+|+. ..+.+..+|+..++ ++++||++++.....
T Consensus 13 ~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 13 WEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp HHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 345555554 45678889999998 889999998887654
No 199
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.45 E-value=25 Score=30.64 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=23.5
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
...++.+|+..+|+|.+||++.+.+...
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999988776543
No 200
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=25.42 E-value=31 Score=29.88 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=28.1
Q ss_pred CCChhh-hhhhhhhccc----cCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLA----TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~La----tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+... .+.+..+|+...+++++|+++++.....
T Consensus 30 gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 30 GLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp TCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 344443 3444444432 2368899999999999999998887543
No 201
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=25.12 E-value=21 Score=32.96 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=31.0
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..++++++||++++.+...
T Consensus 45 gLt~~q~~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp TCCHHHHHHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455544 34444443 34789999999999999999998876543
No 202
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=25.11 E-value=15 Score=31.64 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=30.8
Q ss_pred hhhhhhhhhhccccCCCccchhhccC----ccccceehhhhhhHH
Q 041521 232 VRQRVAVCVWRLATGEPLRVVSKRFG----LGISTCHKLVLEVCS 272 (524)
Q Consensus 232 ~e~rL~i~L~~LatG~s~~~la~~Fg----iS~STvsriv~~v~~ 272 (524)
.+..++.+||....+.+..+|+..++ ++.+||++++.+...
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 34456667776545788999999997 899999888776543
No 203
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.02 E-value=13 Score=28.47 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.6
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|.++.++|...|||++|++++.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3688899999999999999998754
No 204
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=24.98 E-value=12 Score=26.96 Aligned_cols=25 Identities=4% Similarity=-0.072 Sum_probs=21.6
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|.++.++|...|+|.+|++++.+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688899999999999999988754
No 205
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=24.94 E-value=24 Score=30.57 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=22.9
Q ss_pred CCCccchhhccCccccceehhhhhhHH
Q 041521 246 GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+.++.+|+..+|+|++||++.+.+...
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478899999999999999988776543
No 206
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=24.86 E-value=11 Score=32.02 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=23.9
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+.+..+|+..+|+|++||++.+.....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578899999999999999999887543
No 207
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=24.74 E-value=14 Score=31.78 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=29.8
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 34 GVTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp TCCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444 33444433 34578999999999999999998877544
No 208
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.40 E-value=10 Score=27.91 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=21.5
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|.++.++|...|||++|++++.+
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4678899999999999999988754
No 209
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=24.11 E-value=14 Score=27.65 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=31.1
Q ss_pred ccCCCccchhhccCccccceehhhhhhHHHHHhhcccccccCcchHHHHHHHhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEF 298 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L~~~~I~~P~~ee~~~i~~~F 298 (524)
..|.++.++|...|||.+|++++.+- . .-|+.+.+..++..|
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~g-----------~--~~~~~~~l~~ia~~l 60 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCTN-----------D--VQPSLETLFDIAEAL 60 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHTT-----------S--SCCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC-----------C--CCCCHHHHHHHHHHH
Confidence 56889999999999999999987542 1 225666666666655
No 210
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=24.06 E-value=11 Score=27.68 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=21.5
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|.++.++|...|||++|++++.+
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4678899999999999999988744
No 211
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=23.95 E-value=16 Score=31.88 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=29.6
Q ss_pred CChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 230 IPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 230 l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 51 lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44433 34444433 24788899999999999999998887544
No 212
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=23.95 E-value=12 Score=29.08 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=22.3
Q ss_pred cccCCCccchhhccCccccceehhhh
Q 041521 243 LATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 243 LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
-..|.++.++|...|||++|++++.+
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34688899999999999999998754
No 213
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=23.90 E-value=19 Score=35.62 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=27.4
Q ss_pred hhhhccccCCCccchhhccCccccceehhhhhh
Q 041521 238 VCVWRLATGEPLRVVSKRFGLGISTCHKLVLEV 270 (524)
Q Consensus 238 i~L~~LatG~s~~~la~~FgiS~STvsriv~~v 270 (524)
++..+...+.+..+|+..||||++||+|.+.+.
T Consensus 13 ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l 45 (315)
T 2w48_A 13 IAQLYYEQDMTQAQIARELGIYRTTISRLLKRG 45 (315)
T ss_dssp HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 444566678999999999999999999987764
No 214
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=23.83 E-value=22 Score=30.86 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=23.4
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
...++.+|+..+|+|++||++.+.+...
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999988776543
No 215
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=23.58 E-value=23 Score=30.23 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCCccchhhccCccccceehhhhhhHH
Q 041521 246 GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..++.+|+..+|+|.+||++.+.+...
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999988776543
No 216
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=23.54 E-value=23 Score=30.65 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.4
Q ss_pred CCCccchhhccCccccceehhhhhhH
Q 041521 246 GEPLRVVSKRFGLGISTCHKLVLEVC 271 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv~~v~ 271 (524)
..++.+||..+|+|++||++.+.+..
T Consensus 19 ~~s~~ela~~lg~s~~tv~~~l~~L~ 44 (144)
T 2cfx_A 19 RLSMRELGRKIKLSPPSVTERVRQLE 44 (144)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47889999999999999998877654
No 217
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=23.10 E-value=12 Score=37.07 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=20.0
Q ss_pred CCccchhhccCccccceehhhhh
Q 041521 247 EPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~~ 269 (524)
.+.++||...|||.+||||+++.
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHHHCC
Confidence 35689999999999999999863
No 218
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=22.92 E-value=19 Score=30.50 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=22.4
Q ss_pred CccchhhccCccccceehhhhhhHH
Q 041521 248 PLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
+..+|+..+|++++||++.+.....
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 8999999999999999998887654
No 219
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=22.91 E-value=18 Score=31.88 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=30.4
Q ss_pred CCChhh-hhhhhhhccccCCCccchhhccCccccceehhhhhhHH
Q 041521 229 AIPVRQ-RVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 229 ~l~~e~-rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
.+++.+ .++..|+. ..+.+..+|+..+|++++||++++.+...
T Consensus 42 ~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 42 NITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp SCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444 34444443 34688999999999999999998877544
No 220
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=22.79 E-value=27 Score=30.32 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.3
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
...++.+||..+|+|.+||++.+.+...
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3478899999999999999988776543
No 221
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=22.72 E-value=25 Score=29.14 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=22.0
Q ss_pred CCccchhhccCccccceehh----hhhhHHHHH
Q 041521 247 EPLRVVSKRFGLGISTCHKL----VLEVCSAIK 275 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsri----v~~v~~aI~ 275 (524)
.+++.+|...||+.|||+|+ +.++|..+.
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~~~~~~~~~lLa 56 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLA 56 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 46789999999999999995 444455443
No 222
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=22.57 E-value=25 Score=28.54 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=18.8
Q ss_pred CccchhhccCccccceehhhhh
Q 041521 248 PLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 248 s~~~la~~FgiS~STvsriv~~ 269 (524)
+.++|+..||||++||++.+..
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~ 58 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAV 58 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 5678999999999999887665
No 223
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.52 E-value=28 Score=30.16 Aligned_cols=28 Identities=4% Similarity=-0.031 Sum_probs=23.4
Q ss_pred cCCCccchhhccCccccceehhhhhhHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
...++.+||..+|+|++||++.+.+...
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3478899999999999999988777543
No 224
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=22.41 E-value=31 Score=29.56 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=17.3
Q ss_pred ccchhhccCccccceehhhhh
Q 041521 249 LRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 249 ~~~la~~FgiS~STvsriv~~ 269 (524)
-+.|+..||||++||.+.+..
T Consensus 41 er~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 41 IREFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 368999999999998776554
No 225
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=22.39 E-value=12 Score=28.10 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=21.6
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|.++.++|...|||++|++++.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4688899999999999999988754
No 226
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.08 E-value=40 Score=28.55 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=19.2
Q ss_pred ccchhhccCccccceehhhhhhH
Q 041521 249 LRVVSKRFGLGISTCHKLVLEVC 271 (524)
Q Consensus 249 ~~~la~~FgiS~STvsriv~~v~ 271 (524)
.+.|+..||||.+||.+.+....
T Consensus 40 ~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 40 VREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 56899999999999988777654
No 227
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.04 E-value=12 Score=28.77 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=32.4
Q ss_pred hccccCCCccchhhccCccccceehhhhhhHHHHHhhcccccccCcchHHHHHHHhhh
Q 041521 241 WRLATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEF 298 (524)
Q Consensus 241 ~~LatG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L~~~~I~~P~~ee~~~i~~~F 298 (524)
++...|.++.++|...|||.++++++.+- -...|+.+.+..++..|
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~G------------~~~~p~~~~l~~ia~~l 63 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIERN------------LQTNPSIQFLEKVSAVL 63 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTT------------SCCCCBHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC------------CCCCCCHHHHHHHHHHH
Confidence 45567899999999999999999887442 01235556666665555
No 228
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=22.01 E-value=12 Score=30.91 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=22.2
Q ss_pred ccccCCCccchhhccCccccceehh
Q 041521 242 RLATGEPLRVVSKRFGLGISTCHKL 266 (524)
Q Consensus 242 ~LatG~s~~~la~~FgiS~STvsri 266 (524)
+...|.++.++|.+.|||++|++++
T Consensus 45 R~~~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 45 RLNRDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCCHHHHHHHcCCCHHHHHHH
Confidence 4457999999999999999999887
No 229
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=21.87 E-value=14 Score=29.04 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=22.7
Q ss_pred ccccCCCccchhhccCccccceehhhh
Q 041521 242 RLATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 242 ~LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
+...|.++.+++...|||++|++++-+
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 345789999999999999999988743
No 230
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=21.79 E-value=15 Score=26.64 Aligned_cols=25 Identities=8% Similarity=-0.047 Sum_probs=21.3
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|.++.++|...|+|++|++++.+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4578899999999999999988744
No 231
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=21.56 E-value=20 Score=29.62 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=30.0
Q ss_pred ChhhhhhhhhhccccCCCccchhhccC----ccccceehhhhhhHH
Q 041521 231 PVRQRVAVCVWRLATGEPLRVVSKRFG----LGISTCHKLVLEVCS 272 (524)
Q Consensus 231 ~~e~rL~i~L~~LatG~s~~~la~~Fg----iS~STvsriv~~v~~ 272 (524)
+.+..|+.+||. ..+.+..+|++.++ ++.+||.+++.+..+
T Consensus 35 ~~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 35 NAELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp CSCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 345567778887 44788999999997 567888877766543
No 232
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=21.56 E-value=9.4 Score=31.06 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=24.9
Q ss_pred cCCCccchhhccCccccceehhhhhhHHH
Q 041521 245 TGEPLRVVSKRFGLGISTCHKLVLEVCSA 273 (524)
Q Consensus 245 tG~s~~~la~~FgiS~STvsriv~~v~~a 273 (524)
.+.+..+++..+|+|++|+++.+.....+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34778999999999999999998876665
No 233
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=21.55 E-value=13 Score=36.25 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=33.2
Q ss_pred CCChhhhhhhhhhcccc---CCCccchhhccCccccceehhhhhhHHH
Q 041521 229 AIPVRQRVAVCVWRLAT---GEPLRVVSKRFGLGISTCHKLVLEVCSA 273 (524)
Q Consensus 229 ~l~~e~rL~i~L~~Lat---G~s~~~la~~FgiS~STvsriv~~v~~a 273 (524)
.++.-++.+-.|..|+. +.+..+|+...|+++||++|++...+..
T Consensus 25 ~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~ 72 (275)
T 3mq0_A 25 TVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL 72 (275)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45666677777777763 4678999999999999999998876553
No 234
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.14 E-value=30 Score=30.42 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.8
Q ss_pred CCCccchhhccCccccceehhhhhhHH
Q 041521 246 GEPLRVVSKRFGLGISTCHKLVLEVCS 272 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv~~v~~ 272 (524)
..++.+|+..+|+|.+||++.+.+...
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999988776543
No 235
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.95 E-value=12 Score=27.81 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.3
Q ss_pred CCCccchhhccCccccceehhh
Q 041521 246 GEPLRVVSKRFGLGISTCHKLV 267 (524)
Q Consensus 246 G~s~~~la~~FgiS~STvsriv 267 (524)
+.++..||...|||++||+++.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 3478999999999999999874
No 236
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=20.69 E-value=14 Score=27.47 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=29.5
Q ss_pred ccCCCccchhhccCccccceehhhhhhHHHHHhhcccccccCcchHHHHHHHhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDELKMKQIKEEF 298 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~~v~~aI~~~L~~~~I~~P~~ee~~~i~~~F 298 (524)
..|.++.++|...|+|+++++++.+- . ..|+.+.+..++..|
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~g-----------~--~~~~~~~l~~l~~~l 65 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVERG-----------Q--RNVSLVNILKLATAL 65 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT-----------C--SCCBHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC-----------C--CCCCHHHHHHHHHHh
Confidence 36788999999999999999887432 1 235555555555554
No 237
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.68 E-value=18 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.2
Q ss_pred ccccCCCccchhhccCccccceehhhh
Q 041521 242 RLATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 242 ~LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
+-..|.++.++|..+|+|.+|++++-+
T Consensus 80 R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 80 RKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 446799999999999999999998743
No 238
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.61 E-value=15 Score=28.44 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.9
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|.++.++|...|||.+|++++.+
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4688899999999999999988755
No 239
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=20.46 E-value=16 Score=27.42 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.5
Q ss_pred ccCCCccchhhccCccccceehhhh
Q 041521 244 ATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 244 atG~s~~~la~~FgiS~STvsriv~ 268 (524)
..|.++.++|...|||.+|++++.+
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688899999999999999988744
No 240
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=20.30 E-value=24 Score=28.50 Aligned_cols=23 Identities=9% Similarity=0.045 Sum_probs=19.0
Q ss_pred CCccchhhccCccccceehhhhh
Q 041521 247 EPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 247 ~s~~~la~~FgiS~STvsriv~~ 269 (524)
..+..+|+..||+.|||+|+-+.
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~ 47 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRD 47 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HhhHHHHHHhCCCHHHHhhhhhh
Confidence 45789999999999999995443
No 241
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=20.23 E-value=23 Score=27.31 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=23.3
Q ss_pred hhhhhhccccCCCccchhhccCccccceehhhh
Q 041521 236 VAVCVWRLATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 236 L~i~L~~LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
++-.|..+....++.++|...|||.+|++++-+
T Consensus 17 ~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 17 LGELLRSARGDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHc
Confidence 333444444444788999999999999988744
No 242
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.17 E-value=13 Score=28.32 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=22.0
Q ss_pred cccCCCccchhhccCccccceehhhh
Q 041521 243 LATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 243 LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
...|.++.++|...|||++|++++.+
T Consensus 12 ~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 12 IRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34688899999999999999988743
No 243
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=20.06 E-value=19 Score=32.51 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=29.8
Q ss_pred CCChhhhhhhhhh---ccc-----cCCCccchhhccCccccceehhhhh
Q 041521 229 AIPVRQRVAVCVW---RLA-----TGEPLRVVSKRFGLGISTCHKLVLE 269 (524)
Q Consensus 229 ~l~~e~rL~i~L~---~La-----tG~s~~~la~~FgiS~STvsriv~~ 269 (524)
.++.+.+.++.+. -+. .|.+...|+...|||.+|++++...
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 4566666665432 111 2678999999999999999998773
No 244
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=20.01 E-value=25 Score=33.52 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=31.5
Q ss_pred CCCChhhhhhhhhhccccCCCccchhhccCccccceehhhh
Q 041521 228 DAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLVL 268 (524)
Q Consensus 228 ~~l~~e~rL~i~L~~LatG~s~~~la~~FgiS~STvsriv~ 268 (524)
..+++.++.......+..|.+...|+..+|+|.++|.+++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45666666555555557899999999999999999987653
Done!