Your job contains 1 sequence.
>041524
TSLDPRCARRLTTRQLKRSFSLNLSRNFSHSSLDLPDGPGLHHFIAQSSLTASQPLADLA
PASEVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFI
NTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILD
ADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSV
MRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGME
KEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLY
IMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF
CGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAF
RESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041524
(524 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2115410 - symbol:AT4G36390 species:3702 "Arabi... 2116 4.4e-219 1
UNIPROTKB|F1S500 - symbol:CDK5RAP1 "Uncharacterized prote... 1309 1.4e-133 1
UNIPROTKB|E2QYD7 - symbol:CDK5RAP1 "Uncharacterized prote... 1305 3.8e-133 1
UNIPROTKB|Q08DN3 - symbol:CDK5RAP1 "CDK5 regulatory subun... 1301 1.0e-132 1
RGD|708387 - symbol:Cdk5rap1 "CDK5 regulatory subunit ass... 1293 7.1e-132 1
UNIPROTKB|F1NZV3 - symbol:CDK5RAP1 "Uncharacterized prote... 1292 9.1e-132 1
MGI|MGI:1914221 - symbol:Cdk5rap1 "CDK5 regulatory subuni... 1285 5.0e-131 1
ZFIN|ZDB-GENE-070424-90 - symbol:zgc:162738 "zgc:162738" ... 1277 3.5e-130 1
FB|FBgn0037816 - symbol:CG6345 species:7227 "Drosophila m... 1264 8.4e-129 1
UNIPROTKB|Q96SZ6 - symbol:CDK5RAP1 "CDK5 regulatory subun... 1260 2.2e-128 1
DICTYBASE|DDB_G0287079 - symbol:DDB_G0287079 "CDK5 regula... 1168 1.3e-118 1
WB|WBGene00017776 - symbol:F25B5.5 species:6239 "Caenorha... 1134 5.0e-115 1
UNIPROTKB|Q09316 - symbol:F25B5.5 "CDK5RAP1-like protein"... 1134 5.0e-115 1
UNIPROTKB|E2RIW1 - symbol:CDK5RAP1 "Uncharacterized prote... 1110 1.8e-112 1
UNIPROTKB|Q675N4 - symbol:CDK5RAP1 "CDK5 regulatory subun... 993 4.4e-100 1
TIGR_CMR|CHY_1398 - symbol:CHY_1398 "tRNA-i(6)A37 thiotra... 390 1.6e-71 2
UNIPROTKB|Q74B44 - symbol:miaB "(Dimethylallyl)adenosine ... 385 4.7e-70 2
TIGR_CMR|GSU_2198 - symbol:GSU_2198 "tRNA-i(6)A37 modific... 385 4.7e-70 2
UNIPROTKB|O31778 - symbol:miaB "(Dimethylallyl)adenosine ... 368 2.0e-68 2
UNIPROTKB|Q608N1 - symbol:miaB "(Dimethylallyl)adenosine ... 366 9.8e-68 2
UNIPROTKB|Q81WR0 - symbol:miaB "(Dimethylallyl)adenosine ... 370 9.9e-67 2
TIGR_CMR|BA_3908 - symbol:BA_3908 "conserved hypothetical... 370 9.9e-67 2
TIGR_CMR|SPO_A0002 - symbol:SPO_A0002 "tRNA-i(6)A37 thiot... 394 4.8e-66 2
TIGR_CMR|SO_1181 - symbol:SO_1181 "tRNA-i(6)A37 modificat... 353 5.3e-66 2
TIGR_CMR|CPS_3572 - symbol:CPS_3572 "tRNA-i(6)A37 thiotra... 350 3.6e-65 2
TIGR_CMR|ECH_0837 - symbol:ECH_0837 "tRNA-i(6)A37 modific... 364 4.2e-65 2
UNIPROTKB|Q9KTE0 - symbol:miaB "(Dimethylallyl)adenosine ... 346 1.2e-64 2
TIGR_CMR|VC_0962 - symbol:VC_0962 "conserved hypothetical... 346 1.2e-64 2
UNIPROTKB|Q83DX3 - symbol:miaB "(Dimethylallyl)adenosine ... 344 1.6e-64 2
TIGR_CMR|CBU_0569 - symbol:CBU_0569 "conserved hypothetic... 344 1.6e-64 2
UNIPROTKB|P0AEI1 - symbol:miaB "isopentenyl-adenosine A37... 347 1.1e-62 2
TIGR_CMR|NSE_0832 - symbol:NSE_0832 "tRNA-i(6)A37 modific... 346 2.0e-57 2
UNIPROTKB|H0Y721 - symbol:CDK5RAP1 "CDK5 regulatory subun... 377 2.0e-57 2
TIGR_CMR|DET_1385 - symbol:DET_1385 "tRNA-i(6)A37 thiotra... 318 1.6e-55 3
TIGR_CMR|CJE_0508 - symbol:CJE_0508 "tRNA-i(6)A37 thiotra... 314 5.0e-43 2
UNIPROTKB|P54462 - symbol:mtaB "Threonylcarbamoyladenosin... 259 7.5e-38 2
UNIPROTKB|Q81LS6 - symbol:BAS4209 "Uncharacterized protei... 255 8.9e-38 2
TIGR_CMR|BA_4535 - symbol:BA_4535 "conserved hypothetical... 255 8.9e-38 2
UNIPROTKB|Q747R0 - symbol:rimO "Ribosomal protein S12 met... 231 1.5e-35 2
TIGR_CMR|GSU_3205 - symbol:GSU_3205 "MiaB-like tRNA modif... 231 1.5e-35 2
TIGR_CMR|APH_0880 - symbol:APH_0880 "tRNA-i(6)A37 thiotra... 375 1.3e-34 1
UNIPROTKB|Q74A23 - symbol:mtaB "tRNA (2-methylthio-N6-thr... 235 1.0e-29 2
TIGR_CMR|GSU_2568 - symbol:GSU_2568 "MiaB-like tRNA modif... 235 1.0e-29 2
TAIR|locus:2030342 - symbol:AT1G72090 species:3702 "Arabi... 199 6.0e-28 3
TIGR_CMR|CHY_1164 - symbol:CHY_1164 "MiaB-like tRNA modif... 199 2.0e-27 2
UNIPROTKB|Q9KNW0 - symbol:rimO "Ribosomal protein S12 met... 193 1.8e-26 2
TIGR_CMR|VC_2620 - symbol:VC_2620 "conserved hypothetical... 193 1.8e-26 2
UNIPROTKB|Q48FA7 - symbol:rimO "Ribosomal protein S12 met... 182 1.1e-25 3
TIGR_CMR|CHY_0419 - symbol:CHY_0419 "MiaB-like tRNA modif... 307 1.2e-25 1
UNIPROTKB|Q607P8 - symbol:MCA1711 "Putative uncharacteriz... 214 1.6e-25 2
UNIPROTKB|Q87Y01 - symbol:rimO "Ribosomal protein S12 met... 174 5.7e-25 3
UNIPROTKB|Q60CM4 - symbol:rimO "Ribosomal protein S12 met... 186 8.9e-25 2
UNIPROTKB|Q2GHP3 - symbol:ECH_0217 "tRNA modification enz... 231 2.8e-24 2
TIGR_CMR|ECH_0217 - symbol:ECH_0217 "tRNA modification en... 231 2.8e-24 2
UNIPROTKB|E1BRH0 - symbol:CDKAL1 "Uncharacterized protein... 194 1.8e-23 3
TIGR_CMR|DET_0962 - symbol:DET_0962 "tRNA modification en... 188 2.7e-22 2
FB|FBgn0034214 - symbol:CG6550 species:7227 "Drosophila m... 197 4.7e-22 2
UNIPROTKB|Q291H5 - symbol:GA19679 "Threonylcarbamoyladeno... 192 8.5e-22 2
UNIPROTKB|E2RAI1 - symbol:CDKAL1 "CDK5 regulatory subunit... 191 3.4e-21 2
TIGR_CMR|SPO_0277 - symbol:SPO_0277 "MiaB-like tRNA modif... 168 4.0e-21 2
UNIPROTKB|Q5VV42 - symbol:CDKAL1 "Threonylcarbamoyladenos... 198 6.2e-21 2
UNIPROTKB|F1MAW5 - symbol:CDKAL1 "Uncharacterized protein... 192 1.8e-20 2
MGI|MGI:1921765 - symbol:Cdkal1 "CDK5 regulatory subunit ... 190 1.9e-20 2
UNIPROTKB|F1RUG0 - symbol:CDKAL1 "Uncharacterized protein... 190 3.0e-20 2
TIGR_CMR|CJE_1627 - symbol:CJE_1627 "MiaB-like tRNA modif... 171 3.8e-18 2
TIGR_CMR|SPO_0944 - symbol:SPO_0944 "RNA modification enz... 244 8.0e-18 1
WB|WBGene00022363 - symbol:Y92H12BL.1 species:6239 "Caeno... 177 1.6e-17 2
ZFIN|ZDB-GENE-040426-1443 - symbol:cdkal1 "CDK5 regulator... 207 3.0e-17 2
UNIPROTKB|P0AEI4 - symbol:rimO "ribosomal protein S12 D88... 191 1.8e-16 2
UNIPROTKB|Q8EA37 - symbol:rimO "Ribosomal protein S12 met... 171 2.6e-16 2
TIGR_CMR|SO_4072 - symbol:SO_4072 "MiaB-like putative RNA... 171 2.6e-16 2
TIGR_CMR|NSE_0785 - symbol:NSE_0785 "tRNA modification en... 193 1.7e-15 2
UNIPROTKB|F1LV76 - symbol:F1LV76 "Uncharacterized protein... 149 1.2e-09 1
TIGR_CMR|CJE_1086 - symbol:CJE_1086 "MiaB-like tRNA modif... 150 3.0e-08 2
>TAIR|locus:2115410 [details] [associations]
symbol:AT4G36390 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0006655 "phosphatidylglycerol biosynthetic
process" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009073 "aromatic amino acid
family biosynthetic process" evidence=RCA] [GO:0009691 "cytokinin
biosynthetic process" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0010155 "regulation of
proton transport" evidence=RCA] [GO:0016226 "iron-sulfur cluster
assembly" evidence=RCA] [GO:0046777 "protein autophosphorylation"
evidence=RCA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0000079
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AL161589 EMBL:Z99708
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:BT002022 EMBL:BT008395 IPI:IPI00522311 PIR:E85429
RefSeq:NP_195357.2 UniGene:At.27708 ProteinModelPortal:Q8H0V1
SMR:Q8H0V1 STRING:Q8H0V1 PaxDb:Q8H0V1 PRIDE:Q8H0V1
EnsemblPlants:AT4G36390.1 GeneID:829791 KEGG:ath:AT4G36390
TAIR:At4g36390 HOGENOM:HOG000224767 InParanoid:Q8H0V1 OMA:CGRTDGN
PhylomeDB:Q8H0V1 ProtClustDB:CLSN2680299 Genevestigator:Q8H0V1
GermOnline:AT4G36390 TIGRFAMs:TIGR01574 Uniprot:Q8H0V1
Length = 640
Score = 2116 (749.9 bits), Expect = 4.4e-219, P = 4.4e-219
Identities = 400/532 (75%), Positives = 459/532 (86%)
Query: 1 TSLDPRC---ARRLTTRQL--KRSFSLNLSRNFSHSSLDLP---DGPGLHHFIAQSSLTA 52
++L PRC RLT + + K+ FSLNLSR+FS S + DGP LH F++ + A
Sbjct: 49 SALLPRCRSSTHRLTQKPINRKKGFSLNLSRSFSISQIASSGKFDGPSLHQFVSNAQAHA 108
Query: 53 SQPLADLAPASEVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVP 112
S P +E S S++ S+GRIY ETYGCQMN+NDMEIVL+IMKN+GY EV+ P
Sbjct: 109 SLT----TPETESESTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDP 164
Query: 113 ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAE 172
E+AEVIF+NTCAIR+ AE +VWQRLNYFWFLKREWK N ATGR++S PPK+VVLGCMAE
Sbjct: 165 ESAEVIFVNTCAIRENAEQRVWQRLNYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAE 224
Query: 173 RLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKN 232
RLKDKILD+DKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIS+N
Sbjct: 225 RLKDKILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISEN 284
Query: 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNS 292
S+TAFVSVMRGCNNMC+FCIVPFTRGRERSRPVESI++EV ELW+ GVKEVTLLGQNVNS
Sbjct: 285 SITAFVSVMRGCNNMCAFCIVPFTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNS 344
Query: 293 YNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPK 352
YND S + E GANW SEGF+S CKVK MGLRFADLLDRLS+EFPEMRFR+TSPHPK
Sbjct: 345 YNDDSA---DRESGANWEYSEGFSSRCKVKNMGLRFADLLDRLSVEFPEMRFRFTSPHPK 401
Query: 353 DFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGL 412
D+PDELLY+MRDR N+C IHLPAQ+GNS +LE+MRRGYTREAYLDLV+KIR IIPDV +
Sbjct: 402 DYPDELLYLMRDRHNICNLIHLPAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAI 461
Query: 413 SSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRR 472
+SDFI GFCGETEEEH +TL+L++AVGYDMAYMFAYSMRE+THAHRNY DDVPEEVKQRR
Sbjct: 462 TSDFITGFCGETEEEHQETLSLVRAVGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRR 521
Query: 473 LTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524
LTELI+AFRE+TG CYDSQVG+ QLVLVEGPNK+AP+TEL+GK+D+GHRV+F
Sbjct: 522 LTELIDAFRETTGPCYDSQVGSTQLVLVEGPNKRAPETELIGKTDKGHRVSF 573
>UNIPROTKB|F1S500 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045736 "negative regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 EMBL:CU074412
RefSeq:XP_001928891.1 UniGene:Ssc.4299 ProteinModelPortal:F1S500
Ensembl:ENSSSCT00000007949 GeneID:100153041 KEGG:ssc:100153041
Uniprot:F1S500
Length = 589
Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
Identities = 266/494 (53%), Positives = 350/494 (70%)
Query: 35 LPDGPGLHHFIAQSSLTASQP----LADLAPASEVSSATGSEVHSQGRIYQETYGCQMNV 90
L GP HF+ +S+ +P + D P V G Q ++Y ETYGCQMNV
Sbjct: 60 LASGPTFQHFLRSASVPQEKPPSPDVEDPPPYLTVDELLGK----QRKVYLETYGCQMNV 115
Query: 91 NDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKN 150
ND EI SI++ GY N+ E A+VI + TC+IR+ AE +W RL+ LK +
Sbjct: 116 NDTEIAWSILQKNGYLRTSNLQE-ADVILLVTCSIREKAEQTIWNRLHQLKALKSK---- 170
Query: 151 VATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKG 210
R +S+ P +I +LGCMAERLK++IL+ +KMVD++ GPDAYRDLPRLL + GQ+
Sbjct: 171 ----RLRSQVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQA 226
Query: 211 INTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVK 270
N LLSL+ETYAD+ PV+ S ++ +AFVS+MRGC+NMCS+CIVPFTRGRERSRPV SI++
Sbjct: 227 ANVLLSLDETYADVLPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILE 286
Query: 271 EVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFAD 330
EV +L ++G+KEVTLLGQNVNS+ DTS E + + LS GF+S K K+ GLRFA
Sbjct: 287 EVRKLSEQGLKEVTLLGQNVNSFRDTS--EVQFNNAVSTNLSRGFSSNYKTKQGGLRFAH 344
Query: 331 LLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG 390
LLD++S PEMR R+TSPHPKDFPDE+L ++ DR N+CK IHLPAQ+G+S VLE MRRG
Sbjct: 345 LLDQVSQIDPEMRIRFTSPHPKDFPDEVLQLIHDRDNICKQIHLPAQSGSSRVLEAMRRG 404
Query: 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM 450
Y+REAY++LV IR+ IP V LSSDFI GFCGETEE+H T++L++ V Y+M ++FAYSM
Sbjct: 405 YSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLQEVQYNMGFLFAYSM 464
Query: 451 RERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDT 510
R++T A+ DD+PEEVK RRL ELI FRE + + VG +QLVLVEG +K++ T
Sbjct: 465 RQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKTFVGCIQLVLVEGFSKRS-ST 523
Query: 511 ELVGKSDRGHRVAF 524
+L G++D +V F
Sbjct: 524 DLCGRNDGNLKVIF 537
>UNIPROTKB|E2QYD7 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AAEX03013894 ProteinModelPortal:E2QYD7
Ensembl:ENSCAFT00000039522 Uniprot:E2QYD7
Length = 583
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 263/491 (53%), Positives = 348/491 (70%)
Query: 35 LPDGPGLHHFIAQSSLTASQP-LADLAPASEVSSATGSEVHSQGRIYQETYGCQMNVNDM 93
L GP HF+ +S +P + D P V G Q ++Y ETYGCQMNVND
Sbjct: 57 LATGPTFQHFLRSASAPQEKPDMEDPPPYVTVEELLGR----QRKVYLETYGCQMNVNDT 112
Query: 94 EIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVAT 153
EI S+++ +GY N+ E A+VI + TC+IR+ AE +W RL LK T
Sbjct: 113 EIAWSVLQKSGYLRTRNLQE-ADVILLVTCSIREKAEQTIWNRLQQLKALK--------T 163
Query: 154 GRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT 213
R +S+ P +I +LGCMAERLK++IL+ +KMVD++ GPDAYRDLPRLL + GQ+ N
Sbjct: 164 KRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANV 223
Query: 214 LLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD 273
LLSL+ETYAD+ PV+ S ++ +AFVS+MRGC+NMCS+CIVPFTRGRERSRPV SI++EV
Sbjct: 224 LLSLDETYADVMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEVR 283
Query: 274 ELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLD 333
+L ++G+KEVTLLGQNVNS+ D+S E + + LS GF++ K KK GLRF LLD
Sbjct: 284 KLSEQGLKEVTLLGQNVNSFQDSS--EVQFNNAVSTNLSRGFSTNYKPKKGGLRFTYLLD 341
Query: 334 RLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393
++S PEMR R+TSPHPKDFPDE+L ++ +R N+CK IHLPAQ+G+S VLE MRRGY+R
Sbjct: 342 QVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSR 401
Query: 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRER 453
EAY++L+ IR+ IP V LSSDFI GFCGETEE+H T++L++ V Y+M ++FAYSMR++
Sbjct: 402 EAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNMGFLFAYSMRQK 461
Query: 454 THAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELV 513
T A+ DDVPEEVK RRL ELI FRE + + VG+ QLVLVEG +K++ T+L
Sbjct: 462 TRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQLVLVEGHSKRSA-TDLC 520
Query: 514 GKSDRGHRVAF 524
G++D +V F
Sbjct: 521 GRNDGNLKVIF 531
>UNIPROTKB|Q08DN3 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1" species:9913 "Bos taurus" [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
eggNOG:COG0621 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 HOVERGEN:HBG050975
OrthoDB:EOG4SQWWK EMBL:DAAA02036431 EMBL:BC123652 IPI:IPI00694092
RefSeq:NP_001069114.1 UniGene:Bt.3262 STRING:Q08DN3
Ensembl:ENSBTAT00000024670 GeneID:514086 KEGG:bta:514086
InParanoid:Q08DN3 NextBio:20871170 Uniprot:Q08DN3
Length = 589
Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
Identities = 262/494 (53%), Positives = 350/494 (70%)
Query: 35 LPDGPGLHHFIAQSSLTASQP----LADLAPASEVSSATGSEVHSQGRIYQETYGCQMNV 90
L GP F+ +S+ QP + D P V G Q R+Y ETYGCQMNV
Sbjct: 60 LATGPTFQDFLRSASVPPEQPSSSEVEDPPPYLTVDELLGR----QRRVYLETYGCQMNV 115
Query: 91 NDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKN 150
ND EI SI++ +GY N+ E A+VI + TC+IR+ AE +W RL+ K+
Sbjct: 116 NDTEIAWSILQKSGYLRTSNLQE-ADVILLVTCSIREKAEQTIWNRLHQL--------KS 166
Query: 151 VATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKG 210
+ + R +S+ P +I +LGCMAERLK++IL+ +KMVD++ GPDAYRDLP+LL + GQ+
Sbjct: 167 LKSKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAESGQQA 226
Query: 211 INTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVK 270
N LLSL+ETYAD+ PV+ S ++ +AFVS+MRGC+NMCS+CIVPFTRGRERSRPV SI++
Sbjct: 227 ANVLLSLDETYADVMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILE 286
Query: 271 EVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFAD 330
EV +L ++G+KEVTLLGQNVNS+ D S E + + LS GF++ K K+ GLRFA
Sbjct: 287 EVRKLSEQGLKEVTLLGQNVNSFRDNS--EVQFNNAVSTNLSRGFSTNYKAKQGGLRFAH 344
Query: 331 LLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG 390
LLD++S PEMR R+TSPHPKDFPDE+L ++R+R N+CK IHLPAQ+G+S VLE MRRG
Sbjct: 345 LLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERDNICKQIHLPAQSGSSRVLEAMRRG 404
Query: 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM 450
Y+REAY++L+ IR+ IP V LSSDFI GFCGETEE+H T++L++ V Y++ ++FAYSM
Sbjct: 405 YSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNIGFLFAYSM 464
Query: 451 RERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDT 510
R++T A+ DD+PEEVK RRL ELI FRE + S VG QLVLVEGP+K++
Sbjct: 465 RQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKSFVGCTQLVLVEGPSKRSA-A 523
Query: 511 ELVGKSDRGHRVAF 524
+L G++D +V F
Sbjct: 524 DLCGRNDGNLKVIF 537
>RGD|708387 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein 1"
species:10116 "Rattus norvegicus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0007420 "brain development"
evidence=TAS] [GO:0008283 "cell proliferation" evidence=NAS]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0019887
"protein kinase regulator activity" evidence=TAS] [GO:0032403
"protein complex binding" evidence=IDA] [GO:0045664 "regulation of
neuron differentiation" evidence=TAS] [GO:0045736 "negative
regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=ISO;ISS] [GO:0045859 "regulation of protein
kinase activity" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 RGD:708387 GO:GO:0005737
GO:GO:0045664 GO:GO:0007420 GO:GO:0032403 GO:GO:0046872
GO:GO:0008283 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0019887 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 OrthoDB:EOG4SQWWK EMBL:AF177477 EMBL:BC066666
IPI:IPI00203631 RefSeq:NP_663773.1 UniGene:Rn.203271
ProteinModelPortal:Q9JLH6 IntAct:Q9JLH6 STRING:Q9JLH6
Ensembl:ENSRNOT00000021418 GeneID:252827 KEGG:rno:252827
InParanoid:Q9JLH6 NextBio:623881 Genevestigator:Q9JLH6
Uniprot:Q9JLH6
Length = 586
Score = 1293 (460.2 bits), Expect = 7.1e-132, P = 7.1e-132
Identities = 264/491 (53%), Positives = 348/491 (70%)
Query: 35 LPDGPGLHHFIAQSSLTASQPLADLAPASEVSSATGSEVHS-QGRIYQETYGCQMNVNDM 93
L GP HF+ +S+ +P + +G E+ Q ++Y ETYGCQMNVND
Sbjct: 55 LATGPTFQHFLRSASVPQEKPSSPEVE-DPPPYLSGDELLGRQRKVYLETYGCQMNVNDT 113
Query: 94 EIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVAT 153
EI SI++ +GY N+ E A+VI + TC+IR+ AE +W RL+ LK +
Sbjct: 114 EIAWSILQKSGYLRTSNLQE-ADVILLVTCSIREKAEQTIWNRLHQLKVLKAK------- 165
Query: 154 GRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT 213
R +S+ P +I +LGCMAERLK +IL+ +KMVD++ GPDAYRDLPRLL V+ GQ+ N
Sbjct: 166 -RPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVESGQQAANV 224
Query: 214 LLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD 273
LLSL+ETYADI PV+ S ++ +AFVS+MRGC+NMCS+CIVPFTRGRERSRPV SI+ EV
Sbjct: 225 LLSLDETYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVR 284
Query: 274 ELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLD 333
+L ++G+KEVTLLGQNVNS+ D S ++ AN LS GF + K K+ GLRF+ LLD
Sbjct: 285 KLSEQGLKEVTLLGQNVNSFRDNSEVQFSSTGSAN--LSRGFTTNYKPKQGGLRFSHLLD 342
Query: 334 RLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393
++S PEMR R+TSPHPKDFPDE+L ++R+R N+CK IHLPAQ+G+S VLE MRRGY+R
Sbjct: 343 QVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLEAMRRGYSR 402
Query: 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRER 453
EAY+ LV IR+ IP VGLSSDFI GFCGETE++H T++L++ V Y+ ++FAYSMR++
Sbjct: 403 EAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLREVQYNTGFLFAYSMRQK 462
Query: 454 THAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELV 513
T A+ DDVPEEVK RRL ELI FRE + + VG QLVLVEG +K++ T+L
Sbjct: 463 TRAYHRLKDDVPEEVKLRRLEELITVFREEASKVNATSVGCTQLVLVEGFSKRST-TDLC 521
Query: 514 GKSDRGHRVAF 524
G++D +V F
Sbjct: 522 GRNDANLKVIF 532
>UNIPROTKB|F1NZV3 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY EMBL:AADN02019062 IPI:IPI00570955
ProteinModelPortal:F1NZV3 Ensembl:ENSGALT00000010897 Uniprot:F1NZV3
Length = 522
Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
Identities = 258/464 (55%), Positives = 334/464 (71%)
Query: 61 PASEVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFI 120
PA E GS G++Y ETYGCQMNVND EI +I++ +GY+ E A+VI +
Sbjct: 20 PAGEPEPEPGS-TSGLGKVYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADE-ADVILL 77
Query: 121 NTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILD 180
TC++RD AE +W RL + LK R Q+ P +I +LGCMAERLK++IL
Sbjct: 78 VTCSVRDKAEQTIWNRLQHLKALKAR--------RHQACLPLRIGILGCMAERLKEEILH 129
Query: 181 ADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSV 240
+K+VD+V GPDAYRDLPRLL + GQ+ N LLSL+ETYADI PV+ S TAFVS+
Sbjct: 130 REKLVDIVAGPDAYRDLPRLLAMAESGQQAANVLLSLDETYADILPVQTSAGGKTAFVSI 189
Query: 241 MRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGME 300
MRGC+NMCS+CIVPFTRGRERSRP+ SI++EV L +GVKEVTLLGQNVNS+ D S E
Sbjct: 190 MRGCDNMCSYCIVPFTRGRERSRPIASILQEVKMLSDQGVKEVTLLGQNVNSFRDMS--E 247
Query: 301 KEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLY 360
+ + A LS GF+++ K K GLRFA LLD++S PEMR R+TSPHPKDFPDE+L
Sbjct: 248 VQFQSAAAPVLSRGFSTVYKTKPGGLRFAHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQ 307
Query: 361 IMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF 420
++++R N+CK +HLPAQ+G++ VLE MRRGYTREAYL+LVQ +R IP V LSSDFI GF
Sbjct: 308 LIQERHNICKQLHLPAQSGSTRVLEAMRRGYTREAYLELVQHVRNTIPGVSLSSDFIAGF 367
Query: 421 CGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAF 480
CGETEE+H T++L++ V Y++ ++FAYSMR++T A+ DDVP +VKQRRL ELI F
Sbjct: 368 CGETEEDHQQTVSLLREVRYNIGFLFAYSMRQKTRAYHRLQDDVPADVKQRRLEELITVF 427
Query: 481 RESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524
RE + ++ VG QLVLVEGP+K++ +EL G++D +V F
Sbjct: 428 REEAARANEAMVGQSQLVLVEGPSKRSA-SELCGRNDGNIKVIF 470
Score = 211 (79.3 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 47/111 (42%), Positives = 64/111 (57%)
Query: 34 DLPDGPGLHHFIAQSSLTASQPLADLAPASEVSSATGSEVHSQGRIYQETYGCQMNVNDM 93
+LP GP L HF+ + A+ P PA E GS G++Y ETYGCQMNVND
Sbjct: 1 ELPSGPDLRHFLRGA---AAPP-----PAGEPEPEPGS-TSGLGKVYLETYGCQMNVNDT 51
Query: 94 EIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLK 144
EI +I++ +GY+ E A+VI + TC++RD AE +W RL + LK
Sbjct: 52 EIAWAILQKSGYTRTKEADE-ADVILLVTCSVRDKAEQTIWNRLQHLKALK 101
>MGI|MGI:1914221 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein
1" species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0043412 "macromolecule
modification" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 MGI:MGI:1914221
GO:GO:0005737 GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 EMBL:AK010097 EMBL:AK088517 EMBL:BC025132
IPI:IPI00109397 RefSeq:NP_080152.1 UniGene:Mm.289427
ProteinModelPortal:Q8BTW8 SMR:Q8BTW8 STRING:Q8BTW8
PhosphoSite:Q8BTW8 PaxDb:Q8BTW8 PRIDE:Q8BTW8
Ensembl:ENSMUST00000028990 Ensembl:ENSMUST00000109731 GeneID:66971
KEGG:mmu:66971 InParanoid:Q8BTW8 OrthoDB:EOG4SQWWK NextBio:323171
Bgee:Q8BTW8 CleanEx:MM_CDK5RAP1 Genevestigator:Q8BTW8
GermOnline:ENSMUSG00000027487 Uniprot:Q8BTW8
Length = 588
Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
Identities = 262/491 (53%), Positives = 347/491 (70%)
Query: 35 LPDGPGLHHFIAQSSLTASQPLADLAPASEVSSATGSEVHS-QGRIYQETYGCQMNVNDM 93
L GP HF+ +S+ +P + +G E+ Q ++Y ETYGCQMNVND
Sbjct: 57 LATGPTFQHFLRSASVPQEKPSSPEVE-DPPPYLSGDELLGRQRKVYLETYGCQMNVNDT 115
Query: 94 EIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVAT 153
EI SI++ +GY N+ E A+VI + TC+IR+ AE +W RL+ LK T
Sbjct: 116 EIAWSILQKSGYLRTSNLQE-ADVILLVTCSIREKAEQTIWNRLHQLKVLK--------T 166
Query: 154 GRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT 213
R +S+ P +I +LGCMAERLK +IL+ +KMVD++ GPDAYRDLPRLL V+ GQ+ N
Sbjct: 167 KRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVESGQQAANV 226
Query: 214 LLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD 273
LLSL+ETYADI PV+ S ++ +AFVS+MRGC+NMCS+CIVPFTRGRERSRPV SI+ EV
Sbjct: 227 LLSLDETYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILDEVR 286
Query: 274 ELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLD 333
+L ++G+KEVTLLGQNVNS+ D S ++ AN LS GF + K K+ GLRF+ LLD
Sbjct: 287 KLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSAN--LSRGFTTNYKPKQGGLRFSHLLD 344
Query: 334 RLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393
++S PEMR R+TSPHPKDFPDE+L ++R+R N+CK IHLPAQ+G+S VL+ MRRGY+R
Sbjct: 345 QVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLDAMRRGYSR 404
Query: 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRER 453
EAY+ LV +R+ IP V LSSDFI GFCGETE++H T++L++ V Y+ ++FAYSMR++
Sbjct: 405 EAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGFLFAYSMRQK 464
Query: 454 THAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELV 513
T A+ DDVPEEVK RRL ELI FRE + + VG QLVLVEG +K++ T+L
Sbjct: 465 TRAYHRLKDDVPEEVKLRRLEELITVFREEASKANKTSVGCSQLVLVEGFSKRST-TDLC 523
Query: 514 GKSDRGHRVAF 524
G++D +V F
Sbjct: 524 GRNDANLKVIF 534
>ZFIN|ZDB-GENE-070424-90 [details] [associations]
symbol:zgc:162738 "zgc:162738" species:7955 "Danio
rerio" [GO:0043412 "macromolecule modification" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729
ZFIN:ZDB-GENE-070424-90 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:CR385028 EMBL:CT573268 IPI:IPI00877502
ProteinModelPortal:F1QMW8 Ensembl:ENSDART00000104111 Bgee:F1QMW8
Uniprot:F1QMW8
Length = 577
Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
Identities = 260/499 (52%), Positives = 343/499 (68%)
Query: 38 GPGLHHFIA-QSSLTASQPLADLAPASEVSSATGSEVHSQG-----------RIYQETYG 85
G GL + +S LT D +S+ S GSE + + ++Y ETYG
Sbjct: 39 GTGLSRIMQLKSKLTNGPSFQDFIMSSDKSDFDGSEEYEEHYIPKYMSDHSRKVYFETYG 98
Query: 86 CQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKR 145
CQMN ND EI SI++ AGYS + + + A+V+ + TC+IR+ AE +W RL + K+
Sbjct: 99 CQMNTNDTEIAWSILQKAGYSRTLEL-QKADVVLLVTCSIREKAEQTIWNRLKHLTASKK 157
Query: 146 EWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205
+K+ K I VLGCMAERLK ++LD +K+VDV+ GPDAYRDLPRLL
Sbjct: 158 RIQKH--------KRSLTIGVLGCMAERLKSELLDQEKLVDVLAGPDAYRDLPRLLSLAH 209
Query: 206 YGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPV 265
GQ+ N LLSLEETYAD+ PV + +AFVS+MRGC+NMCS+CIVPFTRGRERSRP+
Sbjct: 210 GGQRASNVLLSLEETYADVIPVHQTLEGHSAFVSIMRGCDNMCSYCIVPFTRGRERSRPM 269
Query: 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMG 325
SIV+EV L +GVKE+TLLGQNVNSY D S ++ N +LS GF S+ + K+ G
Sbjct: 270 SSIVEEVRMLSDQGVKEITLLGQNVNSYRDLSKLQFSCSE-RNTQLSRGFQSVYRTKQGG 328
Query: 326 LRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385
LRFADLLDR+SL P MR R+TSPHPKDFPDE+L ++++R N+CK++HLPAQ+G+S +L
Sbjct: 329 LRFADLLDRVSLINPNMRIRFTSPHPKDFPDEVLQLIQERSNICKHLHLPAQSGSSRILH 388
Query: 386 RMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYM 445
MRRGYTREAYL+LV+ IR+IIP V LSSDFI GFC ETEE+H T++L+K VGY++ +
Sbjct: 389 AMRRGYTREAYLELVENIRKIIPGVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIGFF 448
Query: 446 FAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNK 505
F YSMR++THA+ D+VP VK+RRL ELI FRE + + +G QLVLVEG +K
Sbjct: 449 FTYSMRKKTHAYHRLEDNVPAPVKKRRLEELISVFREKATKVNMTLIGNTQLVLVEGKSK 508
Query: 506 KAPDTELVGKSDRGHRVAF 524
++ + EL G++D +V F
Sbjct: 509 RSSE-ELCGRNDGNVKVIF 526
>FB|FBgn0037816 [details] [associations]
symbol:CG6345 species:7227 "Drosophila melanogaster"
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] [GO:0016740
"transferase activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE014297 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 OMA:CGRTDGN EMBL:AY071094 RefSeq:NP_650002.1
UniGene:Dm.31302 ProteinModelPortal:Q9VGZ1 SMR:Q9VGZ1 STRING:Q9VGZ1
PRIDE:Q9VGZ1 EnsemblMetazoa:FBtr0082258 GeneID:41271
KEGG:dme:Dmel_CG6345 UCSC:CG6345-RA FlyBase:FBgn0037816
InParanoid:Q9VGZ1 OrthoDB:EOG4KPRS9 PhylomeDB:Q9VGZ1
GenomeRNAi:41271 NextBio:823020 Bgee:Q9VGZ1 GermOnline:CG6345
Uniprot:Q9VGZ1
Length = 583
Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
Identities = 253/487 (51%), Positives = 334/487 (68%)
Query: 38 GPGLHHFIAQSSLTASQPLADLAPASEVSSATGSEVHSQGR-IYQETYGCQMNVNDMEIV 96
GPG F A + + + + V + + GR ++ E YGCQMN ND E+V
Sbjct: 52 GPGFQDFFAVKPASRLKTDEEEHVDTSVPYLNSIDFNGNGRKVHFEVYGCQMNTNDTEVV 111
Query: 97 LSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156
SI+K GY PE A+VI + TCA+RD AE ++ RL + +K + RS
Sbjct: 112 FSILKENGYLRC-QEPEEADVIMLVTCAVRDGAEQRIRNRLKHLRAMKNK--------RS 162
Query: 157 QSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLE-EVDYGQKGINTLL 215
+HP ++ +LGCMAERLK+K+L+ ++ VDV+ GPD+Y+DLPRLL YG IN LL
Sbjct: 163 TRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAINVLL 222
Query: 216 SLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDEL 275
SL+ETYAD+ PVR++ S TAFVS+MRGC+NMC++CIVPFTRGRERSRP+ SIV EV L
Sbjct: 223 SLDETYADVMPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEVKAL 282
Query: 276 WKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRL 335
++GVKEVTLLGQNVNSY D + E++ A GF+++ K K G FA LL +
Sbjct: 283 AEQGVKEVTLLGQNVNSYRDRTAQEEQDSLKAT--PVPGFSTVYKPKTGGTPFAALLRSV 340
Query: 336 SLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREA 395
+ P+MR R+TSPHPKDF DE+L ++RD PNVCK +HLPAQ+GN+ VLERMRRGY+REA
Sbjct: 341 AQAVPDMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRGYSREA 400
Query: 396 YLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455
YL+LVQ IRQ +P+VGLSSDFICGFCGETEEE DT++L++ V Y++AY+FAYSMRE+T
Sbjct: 401 YLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFAYSMREKTT 460
Query: 456 AHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGK 515
AHR Y DDVP VK RL +++ FRE Q + G QL+L+EG +K++ D G+
Sbjct: 461 AHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLILIEGKSKRS-DAHWFGR 519
Query: 516 SDRGHRV 522
+D +V
Sbjct: 520 NDANIKV 526
>UNIPROTKB|Q96SZ6 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0007420 "brain development" evidence=NAS]
[GO:0045664 "regulation of neuron differentiation" evidence=NAS]
[GO:0045736 "negative regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IDA] [GO:0019901
"protein kinase binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:CH471077 GO:GO:0045664 GO:GO:0019901 GO:GO:0007420
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0045736 EMBL:AL355392 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AF152097 EMBL:AF161516 EMBL:AK023992 EMBL:AK027449
EMBL:AK292075 EMBL:BC001215 EMBL:BC050706 IPI:IPI00306312
IPI:IPI00328276 IPI:IPI00328277 IPI:IPI00328278 RefSeq:NP_057166.3
RefSeq:NP_057492.2 UniGene:Hs.435952 ProteinModelPortal:Q96SZ6
SMR:Q96SZ6 IntAct:Q96SZ6 STRING:Q96SZ6 PhosphoSite:Q96SZ6
DMDM:32129446 PaxDb:Q96SZ6 PRIDE:Q96SZ6 DNASU:51654
Ensembl:ENST00000339269 Ensembl:ENST00000346416
Ensembl:ENST00000357886 Ensembl:ENST00000452723 GeneID:51654
KEGG:hsa:51654 UCSC:uc002wyy.3 UCSC:uc002wyz.3 UCSC:uc010gek.3
UCSC:uc010gem.3 CTD:51654 GeneCards:GC20M031946 HGNC:HGNC:15880
MIM:608200 neXtProt:NX_Q96SZ6 PharmGKB:PA26313 HOVERGEN:HBG050975
InParanoid:Q96SZ6 PhylomeDB:Q96SZ6 ChiTaRS:CDK5RAP1
GenomeRNAi:51654 NextBio:55620 ArrayExpress:Q96SZ6 Bgee:Q96SZ6
CleanEx:HS_CDK5RAP1 Genevestigator:Q96SZ6
GermOnline:ENSG00000101391 Uniprot:Q96SZ6
Length = 601
Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
Identities = 263/507 (51%), Positives = 345/507 (68%)
Query: 35 LPDGPGLHHFIAQSSLTA---SQPLADLAPASEVSSATGSEVHSQGRIYQETYGCQMNVN 91
L GP HF+ +S S + D P + G Q ++Y ETYGCQMNVN
Sbjct: 59 LAAGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGR----QRKVYLETYGCQMNVN 114
Query: 92 DMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNV 151
D EI SI++ +GY N+ E A+VI + TC+IR+ AE +W RL+ LK
Sbjct: 115 DTEIAWSILQKSGYLRTSNLQE-ADVILLVTCSIREKAEQTIWNRLHQLKALK------- 166
Query: 152 ATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGI 211
T R +S+ P +I +LGCMAERLK++IL+ +KMVD++ GPDAYRDLPRLL + GQ+
Sbjct: 167 -TRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAA 225
Query: 212 NTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKE 271
N LLSL+ETYAD+ PV+ S ++ +AFVS+MRGC+NMCS+CIVPFTRGRERSRP+ SI++E
Sbjct: 226 NVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEE 285
Query: 272 VDELWKE--------------GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNS 317
V +L ++ G+KEVTLLGQNVNS+ D S E + LS GF +
Sbjct: 286 VKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNS--EVQFNSAVPTNLSRGFTT 343
Query: 318 MCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
K K+ GLRFA LLD++S PEMR R+TSPHPKDFPDE+L ++ +R N+CK IHLPAQ
Sbjct: 344 NYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQ 403
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+G+S VLE MRRGY+REAY++LV IR+ IP V LSSDFI GFCGETEE+H T++L++
Sbjct: 404 SGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLRE 463
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
V Y+M ++FAYSMR++T A+ DDVPEEVK RRL ELI FRE + + VG QL
Sbjct: 464 VQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQL 523
Query: 498 VLVEGPNKKAPDTELVGKSDRGHRVAF 524
VLVEG +K++ T+L G++D +V F
Sbjct: 524 VLVEGLSKRSA-TDLCGRNDGNLKVIF 549
>DICTYBASE|DDB_G0287079 [details] [associations]
symbol:DDB_G0287079 "CDK5 regulatory
subunit-associated protein 1" species:44689 "Dictyostelium
discoideum" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 dictyBase:DDB_G0287079 GenomeReviews:CM000153_GR
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 EMBL:AAFI02000096
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 RefSeq:XP_637416.1 ProteinModelPortal:Q54KV4
STRING:Q54KV4 EnsemblProtists:DDB0266584 GeneID:8625948
KEGG:ddi:DDB_G0287079 OMA:TSNLQEX ProtClustDB:CLSZ2430042
Uniprot:Q54KV4
Length = 607
Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
Identities = 240/534 (44%), Positives = 357/534 (66%)
Query: 11 LTTRQLKRSFSLNLSRNFSHSSLDLPDGPGLHHFIAQSSLTASQPLADLAPAS-----EV 65
L T LK + NL + D+P L+ F+ S+ ++ + + E+
Sbjct: 36 LNTTNLKINNDNNLKESIREKIKDIPS---LNEFLRNSNNEINENNENKSKIETEEEYEL 92
Query: 66 SSATGSEVHSQG---RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINT 122
S + +G +++ ETYGCQMNV+D E++ SIMK++GY+ + N A+++F+NT
Sbjct: 93 PPYLSSLPNDKGNGRKVWIETYGCQMNVSDEEVICSIMKSSGYT-ISNDFNTADIVFLNT 151
Query: 123 CAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDA 181
C+IR+ AE K+W RL ++R+ GR P IV VLGCMAERLK+K+L++
Sbjct: 152 CSIRENAEAKIWLRLTELRAIRRK------QGR-----PNLIVGVLGCMAERLKEKLLES 200
Query: 182 DKMVDVVCGPDAYRDLPRLLEEVDYG--QKGINTLLSLEETYADISPVRISKNSVTAFVS 239
D VD+V GPDAYR LP LL ++ G Q IN +LS +ETYADI PVR S N V+A+VS
Sbjct: 201 DMKVDIVVGPDAYRSLPSLLATLEDGEQQTAINVILSADETYADIKPVRKSDNQVSAYVS 260
Query: 240 VMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYN----- 294
+MRGCNNMCS+CIVPFTRGRERSRP++SI++EV +L +G KE+TLLGQNVNS+N
Sbjct: 261 IMRGCNNMCSYCIVPFTRGRERSRPIDSILREVKDLSDQGFKEITLLGQNVNSFNYYEES 320
Query: 295 DTSGMEKEVEPGAN------WRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTS 348
+ + E ++ N + EGF ++ K K G+ F L++ +S PE+R R+TS
Sbjct: 321 NNNNNENFIDTQKNKLELESLKPREGFKTIYKSPKKGITFTKLMELVSKVDPEIRIRFTS 380
Query: 349 PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIP 408
PHPKDFPD+LL +++++PN+CK +H+PAQ+G+S VLE MRRGYTRE+Y++L+ I++++P
Sbjct: 381 PHPKDFPDDLLELIKNQPNICKQLHIPAQSGSSKVLESMRRGYTRESYIELIDTIKRVLP 440
Query: 409 DVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEV 468
+SSDFI GFCGE++++H +T++LM+ VGY+ A+MF YS+RE+THAHR DDVP +
Sbjct: 441 GCAISSDFISGFCGESDQDHNETISLMEYVGYENAFMFMYSLREKTHAHRQLKDDVPTTL 500
Query: 469 KQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRV 522
K RLT++++ F + + ++G LVLV+G +K++ + + VG++D +V
Sbjct: 501 KNSRLTQVVDTFYKRLKEKNQLEIGNHHLVLVDGFSKRS-EKDFVGRTDTNKKV 553
>WB|WBGene00017776 [details] [associations]
symbol:F25B5.5 species:6239 "Caenorhabditis elegans"
[GO:0016740 "transferase activity" evidence=IEA] [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0005575 "cellular_component" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 235/494 (47%), Positives = 320/494 (64%)
Query: 37 DGPGLHHFIAQSSLTASQPLADLAPASEVSSA--TGSEVHSQGR-IYQETYGCQMNVNDM 93
DG L FI +S T Q + P+ E + ++ GR + TYGCQMNV+DM
Sbjct: 38 DGLQLSDFIKES--TKKQRQKAIIPSIEDTKEYLNPEDLQGNGRTVCYVTYGCQMNVSDM 95
Query: 94 EIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVAT 153
EIV SIM G+ E + ENA+++ + TC+IRD AE KVW +L
Sbjct: 96 EIVRSIMTKYGFVES-DKKENADIVLLMTCSIRDGAEKKVWNQLKLI------------- 141
Query: 154 GRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGIN 212
RS S + +IV VLGCMAER++ +L+ +V++V GPD+YRDLPRL+ G GIN
Sbjct: 142 -RSNSVNKGQIVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGIN 200
Query: 213 TLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEV 272
LSL+ETYAD+ P+R+ S TAF+S+MRGC+NMC++C+VPFTRGRERSRP+ESIV+EV
Sbjct: 201 VQLSLDETYADVQPIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEV 260
Query: 273 DELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR-LSEGFNSMCKVKKMGLRFADL 331
L +G K+VTLLGQNVNSY D + M+ + P + GF ++ K K GL F L
Sbjct: 261 QRLRDQGYKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLTFTTL 320
Query: 332 LDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391
L++++ P++RFR+TSPHPKDFP +L+ ++ RPN+CK +HLPAQ+G+ LERM RGY
Sbjct: 321 LEKVADAAPDIRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDETLERMERGY 380
Query: 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR 451
TR+ YL LV IR ++P V L+SDFI GFCGETE+ H +TL+L++AV Y ++F YSMR
Sbjct: 381 TRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIRAVRYSFCFVFPYSMR 440
Query: 452 ERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTE 511
+T AH DDVPE+VK RR +L FRE + + +G+ Q VL+EG +K+ D
Sbjct: 441 GKTRAHHRLTDDVPEDVKARRHLDLTTVFREEALKLNQALIGSEQTVLLEGKSKR--DAS 498
Query: 512 LV-GKSDRGHRVAF 524
G+ D G + F
Sbjct: 499 FSHGRIDGGVKAVF 512
>UNIPROTKB|Q09316 [details] [associations]
symbol:F25B5.5 "CDK5RAP1-like protein" species:6239
"Caenorhabditis elegans" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 235/494 (47%), Positives = 320/494 (64%)
Query: 37 DGPGLHHFIAQSSLTASQPLADLAPASEVSSA--TGSEVHSQGR-IYQETYGCQMNVNDM 93
DG L FI +S T Q + P+ E + ++ GR + TYGCQMNV+DM
Sbjct: 38 DGLQLSDFIKES--TKKQRQKAIIPSIEDTKEYLNPEDLQGNGRTVCYVTYGCQMNVSDM 95
Query: 94 EIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVAT 153
EIV SIM G+ E + ENA+++ + TC+IRD AE KVW +L
Sbjct: 96 EIVRSIMTKYGFVES-DKKENADIVLLMTCSIRDGAEKKVWNQLKLI------------- 141
Query: 154 GRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGIN 212
RS S + +IV VLGCMAER++ +L+ +V++V GPD+YRDLPRL+ G GIN
Sbjct: 142 -RSNSVNKGQIVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGIN 200
Query: 213 TLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEV 272
LSL+ETYAD+ P+R+ S TAF+S+MRGC+NMC++C+VPFTRGRERSRP+ESIV+EV
Sbjct: 201 VQLSLDETYADVQPIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEV 260
Query: 273 DELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR-LSEGFNSMCKVKKMGLRFADL 331
L +G K+VTLLGQNVNSY D + M+ + P + GF ++ K K GL F L
Sbjct: 261 QRLRDQGYKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLTFTTL 320
Query: 332 LDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391
L++++ P++RFR+TSPHPKDFP +L+ ++ RPN+CK +HLPAQ+G+ LERM RGY
Sbjct: 321 LEKVADAAPDIRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDETLERMERGY 380
Query: 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR 451
TR+ YL LV IR ++P V L+SDFI GFCGETE+ H +TL+L++AV Y ++F YSMR
Sbjct: 381 TRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIRAVRYSFCFVFPYSMR 440
Query: 452 ERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTE 511
+T AH DDVPE+VK RR +L FRE + + +G+ Q VL+EG +K+ D
Sbjct: 441 GKTRAHHRLTDDVPEDVKARRHLDLTTVFREEALKLNQALIGSEQTVLLEGKSKR--DAS 498
Query: 512 LV-GKSDRGHRVAF 524
G+ D G + F
Sbjct: 499 FSHGRIDGGVKAVF 512
>UNIPROTKB|E2RIW1 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
InterPro:IPR005839 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0016740
GO:GO:0051539 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 Pfam:PF01938 EMBL:AAEX03013894
Ensembl:ENSCAFT00000011867 Uniprot:E2RIW1
Length = 583
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 237/495 (47%), Positives = 327/495 (66%)
Query: 35 LPDGPGLHHFIAQSSLTASQP-LADLAPASEVSSATGSEVHSQGRIYQETY-GCQMNVND 92
L GP HF+ +S +P + D P V G + + IY Y C +D
Sbjct: 57 LATGPTFQHFLRSASAPQEKPDMEDPPPYVTVEELLGRQ---RKDIYINIYICCSPQFSD 113
Query: 93 MEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVA 152
+ I + + + + NV + A+VI + TC+IR+ AE +W RL LK
Sbjct: 114 INIDKKVSQGR-FKKTPNVCKEADVILLVTCSIREKAEQTIWNRLQQLKALK-------- 164
Query: 153 TGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGIN 212
T R +S+ P +I +LGCMAERLK++IL+ +KMVD++ GPDAYRDLPRLL + GQ+ N
Sbjct: 165 TKRLRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAAN 224
Query: 213 TLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEV 272
LLSL+ETYAD+ PV+ S ++ +AFVS+MRGC+NMCS+CIVPFTRGRERSRPV SI++EV
Sbjct: 225 VLLSLDETYADVMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPVASILEEV 284
Query: 273 DELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLL 332
+L ++G+KEVTLLGQNVNS+ D+S E + + LS GF++ K KK GLRF LL
Sbjct: 285 RKLSEQGLKEVTLLGQNVNSFQDSS--EVQFNNAVSTNLSRGFSTNYKPKKGGLRFTYLL 342
Query: 333 DRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHL---PAQTGNSAVLERMRR 389
D++S PEMR R+TSPHPKDFPDE+L ++ V ++ H+ +G + + E +
Sbjct: 343 DQVSRVDPEMRIRFTSPHPKDFPDEVLQLI-----VLEFKHIFVCSLTSGLTCIAEIRLK 397
Query: 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449
GY+REAY++L+ IR+ IP V LSSDFI GFCGETEE+H T++L++ V Y+M ++FAYS
Sbjct: 398 GYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNMGFLFAYS 457
Query: 450 MRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPD 509
MR++T A+ DDVPEEVK RRL ELI FRE + + VG+ QLVLVEG +K++
Sbjct: 458 MRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQLVLVEGHSKRSA- 516
Query: 510 TELVGKSDRGHRVAF 524
T+L G++D +V F
Sbjct: 517 TDLCGRNDGNLKVIF 531
>UNIPROTKB|Q675N4 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1 transcript variant 4" species:9606 "Homo sapiens" [GO:0009451
"RNA modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AL355392
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 UniGene:Hs.435952 HGNC:HGNC:15880
HOVERGEN:HBG050975 ChiTaRS:CDK5RAP1 EMBL:AY462284 IPI:IPI01014266
SMR:Q675N4 STRING:Q675N4 Ensembl:ENST00000544843 Uniprot:Q675N4
Length = 426
Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
Identities = 204/383 (53%), Positives = 267/383 (69%)
Query: 35 LPDGPGLHHFIAQSSLTA---SQPLADLAPASEVSSATGSEVHSQGRIYQETYGCQMNVN 91
L GP HF+ +S S + D P + G Q ++Y ETYGCQMNVN
Sbjct: 59 LAAGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGR----QRKVYLETYGCQMNVN 114
Query: 92 DMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNV 151
D EI SI++ +GY N+ E A+VI + TC+IR+ AE +W RL+ LK
Sbjct: 115 DTEIAWSILQKSGYLRTSNLQE-ADVILLVTCSIREKAEQTIWNRLHQLKALK------- 166
Query: 152 ATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGI 211
T R +S+ P +I +LGCMAERLK++IL+ +KMVD++ GPDAYRDLPRLL + GQ+
Sbjct: 167 -TRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAA 225
Query: 212 NTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKE 271
N LLSL+ETYAD+ PV+ S ++ +AFVS+MRGC+NMCS+CIVPFTRGRERSRP+ SI++E
Sbjct: 226 NVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEE 285
Query: 272 VDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADL 331
V +L ++G+KEVTLLGQNVNS+ D S E + LS GF + K K+ GLRFA L
Sbjct: 286 VKKLSEQGLKEVTLLGQNVNSFRDNS--EVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHL 343
Query: 332 LDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391
LD++S PEMR R+TSPHPKDFPDE+L ++ +R N+CK IHLPAQ+G+S VLE MRRGY
Sbjct: 344 LDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGY 403
Query: 392 TREAYLDLVQKIRQIIP-DVGLS 413
+REAY++LV IR+ IP D G+S
Sbjct: 404 SREAYVELVHHIRESIPEDTGIS 426
>TIGR_CMR|CHY_1398 [details] [associations]
symbol:CHY_1398 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_360230.1
ProteinModelPortal:Q3ACA4 STRING:Q3ACA4 GeneID:3726945
KEGG:chy:CHY_1398 PATRIC:21275927 ProtClustDB:PRK14328
BioCyc:CHYD246194:GJCN-1397-MONOMER TIGRFAMs:TIGR01579
Uniprot:Q3ACA4
Length = 440
Score = 390 (142.3 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 86/214 (40%), Positives = 125/214 (58%)
Query: 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCK 370
L + NS K K FA+LL + R R+T+ HP+D D+++ +M +C+
Sbjct: 201 LGQNVNSYGKDLKGKPMFAELLADIEKIDGLWRVRFTTSHPRDLTDDVIEVMASSRKICE 260
Query: 371 YIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHAD 430
++HLP Q G++ +L+ M RGYTRE YL+LV+KIR IP V ++D I GF GETEE+
Sbjct: 261 HLHLPVQAGSNKILKAMHRGYTREYYLNLVEKIRAKIPKVSFTTDIIVGFPGETEEDFEQ 320
Query: 431 TLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDS 490
TL L++ V YD A+ F Y+ R T A D VPEEVK RR+ ELIE + + +
Sbjct: 321 TLDLVRKVRYDSAFTFVYNKRTGTPA-AEMKDQVPEEVKSRRIQELIELQNGISLELNKN 379
Query: 491 QVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524
+ G + +LVEG +K +T+L G++ V F
Sbjct: 380 EEGNIHEILVEGKSK-TDETKLAGRTRTNKLVVF 412
Score = 352 (129.0 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 85/225 (37%), Positives = 133/225 (59%)
Query: 80 YQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPEN--AEVIFINTCAIRDYAEHKVWQRL 137
Y T+GCQMNV+D E + I+++ G+ + PE A++I INTC++R+ AE+KV+ ++
Sbjct: 7 YIITHGCQMNVHDSETIAGILESMGF---VPSPEEKTADLIIINTCSVRETAENKVFTKI 63
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIV-VLGCMA--ERLKDKILDADKMVDVVCGPDAY 194
LKRE +P ++ V GC+ E++ ++L+ +D + G
Sbjct: 64 GELKKLKRE-------------NPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNL 110
Query: 195 RDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVP 254
+LP++LE V + + + E + PV+ + V A+V++M GCNN C++CIVP
Sbjct: 111 PELPKILERVFEKHERVLEVWQSEGQIVEGIPVK-REPGVRAWVTIMYGCNNFCTYCIVP 169
Query: 255 FTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYN-DTSG 298
+ RGRERSR E I++E+ +L EG +EVTLLGQNVNSY D G
Sbjct: 170 YVRGRERSRKKEDILQEIRQLVAEGYREVTLLGQNVNSYGKDLKG 214
>UNIPROTKB|Q74B44 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 385 (140.6 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 89/221 (40%), Positives = 127/221 (57%)
Query: 79 IYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLN 138
+Y ET+GCQMNVND E + +++K+ GY + PE A+++ +NTC++R AE KV+ L
Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDD-PERADLVILNTCSVRAKAEQKVYGHLG 65
Query: 139 YFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLP 198
F + R KK G V GC+A++ +++L +D+V G LP
Sbjct: 66 RFKGV-RSRKKGFLLG-----------VGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLP 113
Query: 199 RLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRG 258
++ + G++ ET D+ P + VT FV+VM+GC+N CS+CIVP+ RG
Sbjct: 114 EIVRAAERGERRAEVGFIDNETRLDLFPETGGEGGVTRFVTVMQGCDNFCSYCIVPYVRG 173
Query: 259 RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYN-DTSG 298
RE SR I+ EV + EGVKEVTLLGQNVNSY T G
Sbjct: 174 REISRRSSDIIDEVRKSVAEGVKEVTLLGQNVNSYGLKTEG 214
Score = 343 (125.8 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 89/214 (41%), Positives = 123/214 (57%)
Query: 311 LSEGFNSMCKVKKMG-LRFADLLDRLS-LEFPEMRFRYTSPHPKDFPDELLYIMRDRPNV 368
L + NS +K G L FA L+ R++ +E E R R+T+ HPKD EL+ + P +
Sbjct: 201 LGQNVNSY-GLKTEGELSFAGLIRRIAEVEGLE-RIRFTTSHPKDISPELIACFAEVPKL 258
Query: 369 CKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEH 428
C +IHLPAQ+G+ AVL RM RGYTR YL+ V+ +R P + + D I GF GETEE+
Sbjct: 259 CGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRAARPGIQFTGDMIVGFPGETEEDF 318
Query: 429 ADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCY 488
T++LM+ V Y + F YS R T A D V + KQ RL L ++ +
Sbjct: 319 QATISLMEEVRYADLFSFIYSPRPETAA-AGIRDTVSRKEKQSRLDRLQTLQQQMKRERN 377
Query: 489 DSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRV 522
S VGT QLVLVEG +K+ +L G+ D G+R+
Sbjct: 378 ISFVGTRQLVLVEGVSKRGD--QLYGRID-GNRI 408
>TIGR_CMR|GSU_2198 [details] [associations]
symbol:GSU_2198 "tRNA-i(6)A37 modification enzyme MiaB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 385 (140.6 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 89/221 (40%), Positives = 127/221 (57%)
Query: 79 IYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLN 138
+Y ET+GCQMNVND E + +++K+ GY + PE A+++ +NTC++R AE KV+ L
Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDD-PERADLVILNTCSVRAKAEQKVYGHLG 65
Query: 139 YFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLP 198
F + R KK G V GC+A++ +++L +D+V G LP
Sbjct: 66 RFKGV-RSRKKGFLLG-----------VGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLP 113
Query: 199 RLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRG 258
++ + G++ ET D+ P + VT FV+VM+GC+N CS+CIVP+ RG
Sbjct: 114 EIVRAAERGERRAEVGFIDNETRLDLFPETGGEGGVTRFVTVMQGCDNFCSYCIVPYVRG 173
Query: 259 RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYN-DTSG 298
RE SR I+ EV + EGVKEVTLLGQNVNSY T G
Sbjct: 174 REISRRSSDIIDEVRKSVAEGVKEVTLLGQNVNSYGLKTEG 214
Score = 343 (125.8 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 89/214 (41%), Positives = 123/214 (57%)
Query: 311 LSEGFNSMCKVKKMG-LRFADLLDRLS-LEFPEMRFRYTSPHPKDFPDELLYIMRDRPNV 368
L + NS +K G L FA L+ R++ +E E R R+T+ HPKD EL+ + P +
Sbjct: 201 LGQNVNSY-GLKTEGELSFAGLIRRIAEVEGLE-RIRFTTSHPKDISPELIACFAEVPKL 258
Query: 369 CKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEH 428
C +IHLPAQ+G+ AVL RM RGYTR YL+ V+ +R P + + D I GF GETEE+
Sbjct: 259 CGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRAARPGIQFTGDMIVGFPGETEEDF 318
Query: 429 ADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCY 488
T++LM+ V Y + F YS R T A D V + KQ RL L ++ +
Sbjct: 319 QATISLMEEVRYADLFSFIYSPRPETAA-AGIRDTVSRKEKQSRLDRLQTLQQQMKRERN 377
Query: 489 DSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRV 522
S VGT QLVLVEG +K+ +L G+ D G+R+
Sbjct: 378 ISFVGTRQLVLVEGVSKRGD--QLYGRID-GNRI 408
>UNIPROTKB|O31778 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035597 "N6-isopentenyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14327 PIR:D69884 RefSeq:NP_389583.1
ProteinModelPortal:O31778 SMR:O31778
EnsemblBacteria:EBBACT00000002125 GeneID:939451 KEGG:bsu:BSU17010
PATRIC:18975209 GenoList:BSU17010 BioCyc:BSUB:BSU17010-MONOMER
GO:GO:0035597 Uniprot:O31778
Length = 509
Score = 368 (134.6 bits), Expect = 2.0e-68, Sum P(2) = 2.0e-68
Identities = 87/219 (39%), Positives = 126/219 (57%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
+ Y TYGCQMN +D E++ I GY E N ++A VI +NTCAIR+ AE+KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFMALGY-EATNSVDDANVILLNTCAIRENAENKVFGEL 125
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIV-VLGCMA--ERLKDKILDADKMVDVVCGPDAY 194
+ LK KN +P I+ V GCM+ E + ++IL VD++ G
Sbjct: 126 GHLKALK----KN---------NPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNI 172
Query: 195 RDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVP 254
LP LL E ++ + + S E + P ++ + +V++M GC+ C++CIVP
Sbjct: 173 HRLPELLSEAYLSKEMVVEVWSKEGDVIENLP-KVRNGKIKGWVNIMYGCDKFCTYCIVP 231
Query: 255 FTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
+TRG+ERSR E I++EV L EG KE+TLLGQNVN+Y
Sbjct: 232 YTRGKERSRRPEDIIQEVRRLASEGYKEITLLGQNVNAY 270
Score = 361 (132.1 bits), Expect = 2.0e-68, Sum P(2) = 2.0e-68
Identities = 84/216 (38%), Positives = 125/216 (57%)
Query: 311 LSEGFNSMCK-VKKMGLRFADLLDRL-SLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNV 368
L + N+ K + M DL+D L ++ P R R+T+ HP+DF D L+ ++ N+
Sbjct: 263 LGQNVNAYGKDFEDMTYGLGDLMDELRKIDIP--RIRFTTSHPRDFDDRLIEVLAKGGNL 320
Query: 369 CKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEH 428
+IHLP Q+G+S VL+ M R Y RE Y++LV+KI++ +P+ L++D I GF ET+E+
Sbjct: 321 LDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLTTDIIVGFPNETDEQF 380
Query: 429 ADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCY 488
+TL+L + V +D AY F YS RE T A + D+VP VK+ RL L E + +
Sbjct: 381 EETLSLYREVEFDSAYTFIYSPREGTPAAK-MKDNVPMRVKKERLQRLNALVNEISAKKM 439
Query: 489 DSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524
G V VLVEG +K PD L G +++ V F
Sbjct: 440 KEYEGKVVEVLVEGESKNNPDI-LAGYTEKSKLVNF 474
>UNIPROTKB|Q608N1 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243233 "Methylococcus
capsulatus str. Bath" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AE017282 GenomeReviews:AE017282_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_113916.1 ProteinModelPortal:Q608N1 GeneID:3102404
KEGG:mca:MCA1459 PATRIC:22606754 Uniprot:Q608N1
Length = 458
Score = 366 (133.9 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 75/182 (41%), Positives = 113/182 (62%)
Query: 343 RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQK 402
R R+T+ HP +F D L+ RD P + ++HLP Q+G+ +L M+RG+TR Y+ V K
Sbjct: 233 RIRFTTSHPVEFSDALIEAFRDIPQLVSHLHLPVQSGSDRILRLMKRGHTRAEYMAKVAK 292
Query: 403 IRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD 462
+R+I PD+ LSSDFI GF GET+E+ DT+ L++ +G+D ++ F +S R T A D
Sbjct: 293 LREIRPDLSLSSDFIVGFPGETDEDFEDTMALIEQLGFDQSFSFIFSARPGTPAAA-MAD 351
Query: 463 DVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRV 522
DVP E K+ RL L ++ + S VG++Q VLVEG ++K + EL G+++ V
Sbjct: 352 DVPPETKRARLARLQAKIADNAAKIGASMVGSIQSVLVEGTSRKNFN-ELSGRTENNRVV 410
Query: 523 AF 524
F
Sbjct: 411 NF 412
Score = 340 (124.7 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 77/218 (35%), Positives = 123/218 (56%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
++Y ET+GCQMN D + +++ + E+ PE A+V+ +NTC+IRD A+ KV+ +L
Sbjct: 4 KLYIETFGCQMNEYDSAKMRDLLEVSDSFELARSPEEADVLLLNTCSIRDKAQEKVFSQL 63
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRD 196
W+ + + P ++ V GC+A + + + VD+V GP
Sbjct: 64 G-------RWRP------IKLRRPEVVIGVGGCVASQEGEALQKRAPYVDIVFGPQTLHR 110
Query: 197 LPRLLEEVDYGQKGI-NTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPF 255
LP +LE+V ++ + + E + + R + AFVSVM GC C+FC+VP+
Sbjct: 111 LPSMLEQVRCERRPVVDVSFPAIEKFDALPEPRA--DGPKAFVSVMEGCGKYCTFCVVPY 168
Query: 256 TRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
TRG E SRPV+ ++ E+ L ++GV+EV LLGQNVN+Y
Sbjct: 169 TRGEEISRPVDDVIAEIVALAEQGVREVNLLGQNVNAY 206
>UNIPROTKB|Q81WR0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 370 (135.3 bits), Expect = 9.9e-67, Sum P(2) = 9.9e-67
Identities = 81/218 (37%), Positives = 129/218 (59%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
+ Y TYGCQMN +D E++ I GY + E+A+V+ +NTCAIR+ AE+KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFST-EDADVVLLNTCAIRENAENKVFGEL 125
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMA--ERLKDKILDADKMVDVVCGPDAYR 195
+ LKR ++ G V GCM+ E + +KI+ ++ VD+V G
Sbjct: 126 GHLKSLKRR-NSDLLIG-----------VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIH 173
Query: 196 DLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPF 255
LP +L++ + ++ + + S E + P ++ + + A+V++M GC+ C++CIVP+
Sbjct: 174 RLPYILKDAMFSKETVVEVWSKEGDVIENLP-KVRRGDIKAWVNIMYGCDKFCTYCIVPY 232
Query: 256 TRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
TRG+ERSR E I++E+ L G KE+TLLGQNVN+Y
Sbjct: 233 TRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY 270
Score = 339 (124.4 bits), Expect = 9.9e-67, Sum P(2) = 9.9e-67
Identities = 76/195 (38%), Positives = 118/195 (60%)
Query: 330 DLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389
DL+D L + R R+T+ HP+DF D L+ ++ N+ ++IHLP Q+G++ +L+ M R
Sbjct: 283 DLMDELR-KVDIARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMAR 341
Query: 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449
Y+RE YL+LV+KI++ IP+ L++D I GF ET+E+ +T++L + VG+D A+ F YS
Sbjct: 342 KYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYS 401
Query: 450 MRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPD 509
RE T A + D+VP EVK+ RL L + + D G + VLV+G +K P+
Sbjct: 402 PREGTPAAK-MKDNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPE 460
Query: 510 TELVGKSDRGHRVAF 524
L G + V F
Sbjct: 461 V-LAGYTRTNKLVNF 474
>TIGR_CMR|BA_3908 [details] [associations]
symbol:BA_3908 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 370 (135.3 bits), Expect = 9.9e-67, Sum P(2) = 9.9e-67
Identities = 81/218 (37%), Positives = 129/218 (59%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
+ Y TYGCQMN +D E++ I GY + E+A+V+ +NTCAIR+ AE+KV+ L
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFST-EDADVVLLNTCAIRENAENKVFGEL 125
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMA--ERLKDKILDADKMVDVVCGPDAYR 195
+ LKR ++ G V GCM+ E + +KI+ ++ VD+V G
Sbjct: 126 GHLKSLKRR-NSDLLIG-----------VCGCMSQEESVVNKIMQKNQHVDMVFGTHNIH 173
Query: 196 DLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPF 255
LP +L++ + ++ + + S E + P ++ + + A+V++M GC+ C++CIVP+
Sbjct: 174 RLPYILKDAMFSKETVVEVWSKEGDVIENLP-KVRRGDIKAWVNIMYGCDKFCTYCIVPY 232
Query: 256 TRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
TRG+ERSR E I++E+ L G KE+TLLGQNVN+Y
Sbjct: 233 TRGKERSRRPEDIIQEIRHLAANGYKEITLLGQNVNAY 270
Score = 339 (124.4 bits), Expect = 9.9e-67, Sum P(2) = 9.9e-67
Identities = 76/195 (38%), Positives = 118/195 (60%)
Query: 330 DLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389
DL+D L + R R+T+ HP+DF D L+ ++ N+ ++IHLP Q+G++ +L+ M R
Sbjct: 283 DLMDELR-KVDIARIRFTTSHPRDFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMAR 341
Query: 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449
Y+RE YL+LV+KI++ IP+ L++D I GF ET+E+ +T++L + VG+D A+ F YS
Sbjct: 342 KYSREHYLELVRKIKEAIPNAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYS 401
Query: 450 MRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPD 509
RE T A + D+VP EVK+ RL L + + D G + VLV+G +K P+
Sbjct: 402 PREGTPAAK-MKDNVPMEVKKERLQRLNALVNKLAIEKNDRYKGQIVEVLVDGESKNNPE 460
Query: 510 TELVGKSDRGHRVAF 524
L G + V F
Sbjct: 461 V-LAGYTRTNKLVNF 474
>TIGR_CMR|SPO_A0002 [details] [associations]
symbol:SPO_A0002 "tRNA-i(6)A37 thiotransferase enzyme
MiaB" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:CP000032 GenomeReviews:CP000032_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:YP_164834.1 ProteinModelPortal:Q5LLM0
GeneID:3196777 KEGG:sil:SPOA0002 PATRIC:23381304 Uniprot:Q5LLM0
Length = 439
Score = 394 (143.8 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 87/236 (36%), Positives = 133/236 (56%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
+++ +TYGCQMNV D E + + GY E + E+A++I +NTC IR+ A KV+ L
Sbjct: 6 KLFIKTYGCQMNVYDSERMAEALGGQGYVETQSA-EDADMILLNTCHIREKAAEKVYSEL 64
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDL 197
F LK +K KI V GC+A+ ++I+ +VD+V GP +Y L
Sbjct: 65 GRFKGLKA------------AKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRL 112
Query: 198 PRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTR 257
P L + G+K ++T E+ + + +K TAF++V GC+ C+FC+VP+TR
Sbjct: 113 PELEAKTRAGEKALDTDFPEEDKFEKLKGRPKAKRGPTAFLTVQEGCDKFCAFCVVPYTR 172
Query: 258 GRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313
G E SRP + I++E +EL + GV+E+TLLGQNVN+Y+ G W L +
Sbjct: 173 GAEVSRPADRILREANELVERGVREITLLGQNVNAYHGAGPNGDMTLAGLIWELDK 228
Score = 296 (109.3 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 70/181 (38%), Positives = 100/181 (55%)
Query: 343 RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQK 402
R R+T+ HP D D+L+ + Y+HLP Q G+ +L+RM R +T E+YL L+++
Sbjct: 234 RIRFTTSHPNDMADDLIEAHGTCAKLMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIER 293
Query: 403 IRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA-HRNYV 461
IR PD+ +S DFI GF ETE + DTL L++ V Y AY F YS R T A R V
Sbjct: 294 IRAARPDIVMSGDFIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERAQV 353
Query: 462 DDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHR 521
D + + +RL +I + + D VG VL E P ++ P ++VGKS+ H
Sbjct: 354 DPAEADDRLQRLQAVITRHQR---EIQDGMVGREVSVLFEKPGRQ-PG-QMVGKSEYLHA 408
Query: 522 V 522
V
Sbjct: 409 V 409
>TIGR_CMR|SO_1181 [details] [associations]
symbol:SO_1181 "tRNA-i(6)A37 modification enzyme MiaB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_716806.1 ProteinModelPortal:Q8CX45
GeneID:1169010 KEGG:son:SO_1181 PATRIC:23522002 Uniprot:Q8CX45
Length = 474
Score = 353 (129.3 bits), Expect = 5.3e-66, Sum P(2) = 5.3e-66
Identities = 80/218 (36%), Positives = 128/218 (58%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIM-KNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQR 136
+++ +T+GCQMN D + ++ + GY+ + E A+++ +NTC+IR+ A+ KV+ +
Sbjct: 4 KLHIKTWGCQMNEYDSSKMADLLGEYQGYT-LTEEAEEADILLLNTCSIREKAQEKVFHQ 62
Query: 137 LNYFWFLKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYR 195
L WK + K+P I+ V GC+A + I D + VD++ GP
Sbjct: 63 LG-------RWKT------LKDKNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLH 109
Query: 196 DLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPF 255
LP ++E+V G+K + + E D P ++ TAFVS+M GC+ CSFC+VP+
Sbjct: 110 RLPEMIEQVRRGEKAVIDVSFPEIEKFDRLPEPRAEGP-TAFVSIMEGCSKYCSFCVVPY 168
Query: 256 TRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
TRG E SRP + I+ E+ +L ++GV+EV LLGQNVN+Y
Sbjct: 169 TRGEEVSRPSDDIILEIAQLAEQGVREVNLLGQNVNAY 206
Score = 339 (124.4 bits), Expect = 5.3e-66, Sum P(2) = 5.3e-66
Identities = 72/197 (36%), Positives = 118/197 (59%)
Query: 328 FADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387
FA+LL ++ R R+T+ HP +F +++ + D P + ++HLP Q+G+ +L M
Sbjct: 218 FAELLRYVAAIDGIDRIRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTAM 277
Query: 388 RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFA 447
+RG+ Y +++++R+ PD+ +SSDFI GF GET+E+ ADT+ L++ V +D ++ F
Sbjct: 278 KRGHMAIEYKSIIRRLRKARPDIQISSDFIIGFPGETQEDFADTMKLIEDVAFDHSFSFI 337
Query: 448 YSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKA 507
YS R T A + DDV E K++RL L + + + +GTVQ +LVEGP+ K
Sbjct: 338 YSARPGTPA-ADLPDDVDMEEKKQRLAILQDRITQQAMRYSRHMMGTVQRILVEGPSVKN 396
Query: 508 PDTELVGKSDRGHRVAF 524
P EL G+++ V F
Sbjct: 397 P-MELRGRTENNRVVNF 412
>TIGR_CMR|CPS_3572 [details] [associations]
symbol:CPS_3572 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_270240.1 ProteinModelPortal:Q47Y80 STRING:Q47Y80
GeneID:3520404 KEGG:cps:CPS_3572 PATRIC:21470075
ProtClustDB:PRK14325 BioCyc:CPSY167879:GI48-3594-MONOMER
Uniprot:Q47Y80
Length = 480
Score = 350 (128.3 bits), Expect = 3.6e-65, Sum P(2) = 3.6e-65
Identities = 76/199 (38%), Positives = 119/199 (59%)
Query: 327 RFADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385
RFADL+ RL + R RYT+ HP +F D+++ D P + ++HLP Q+G +L
Sbjct: 217 RFADLV-RLVATIDGIDRIRYTTSHPVEFTDDIIEAYTDVPELVNHLHLPVQSGCDRILT 275
Query: 386 RMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYM 445
+M+RG+T Y ++K++++ P++ +SSDFI GF GET+E+ T+ L+KAV +D+++
Sbjct: 276 QMKRGHTALEYKSQIRKLKKVRPELSMSSDFIIGFPGETDEDFTATMDLIKAVDFDLSFS 335
Query: 446 FAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNK 505
F YS R T A + DD+ ++ K+ RL L E + + T Q VLVEGP++
Sbjct: 336 FIYSARPGTPA-ADLPDDISDQTKKDRLKLLQEQITHQALRIARQMLNTEQRVLVEGPSR 394
Query: 506 KAPDTELVGKSDRGHRVAF 524
K P EL GK++ V F
Sbjct: 395 KNP-MELRGKTENNRTVNF 412
Score = 348 (127.6 bits), Expect = 3.6e-65, Sum P(2) = 3.6e-65
Identities = 78/218 (35%), Positives = 128/218 (58%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNA-GYSEVINVPENAEVIFINTCAIRDYAEHKVWQR 136
++Y +T+GCQMN D + + ++ + G+S ++ E A+VI +NTC+IR+ A+ KV+ +
Sbjct: 4 KLYIKTWGCQMNEYDSQKMAELLDSTHGFS-LVEEAEQADVILLNTCSIREKAQEKVFHQ 62
Query: 137 LNYFWFLKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYR 195
L WK N+ + K P ++ V GC+A + D I VD++ GP
Sbjct: 63 LG-------RWK-NL-----KDKKPDLLIGVGGCVASQEGDSIRKRAPFVDMIFGPQTLH 109
Query: 196 DLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPF 255
LP +L ++ + + I + E D P + +AFVS+M GC+ C+FC+VP+
Sbjct: 110 RLPEMLNQLQHSKSPIIDVSFPEIEKFDRLP-EPKADGASAFVSIMEGCSKYCTFCVVPY 168
Query: 256 TRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
TRG E SRP++ ++ E+ +L ++GV+EV LLGQNVN+Y
Sbjct: 169 TRGEEVSRPLDDVLYEIAQLAEQGVREVNLLGQNVNAY 206
>TIGR_CMR|ECH_0837 [details] [associations]
symbol:ECH_0837 "tRNA-i(6)A37 modification enzyme MiaB"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
PROSITE:PS50926 TIGRFAMs:TIGR00089 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
RefSeq:YP_507633.1 ProteinModelPortal:Q2GG00 STRING:Q2GG00
GeneID:3927997 KEGG:ech:ECH_0837 PATRIC:20577090
BioCyc:ECHA205920:GJNR-840-MONOMER Uniprot:Q2GG00
Length = 442
Score = 364 (133.2 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
Identities = 91/229 (39%), Positives = 131/229 (57%)
Query: 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQ 135
QG +Y ++YGCQMNV D I+ +I+K G++ V+N P A ++ +NTC IR+ A K++
Sbjct: 2 QG-LYIKSYGCQMNVYDSLIMENIIKPLGFT-VVNEPSEANIVILNTCHIREKASEKLYS 59
Query: 136 RLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYR 195
L K + K++ IVV GC+A+ ++I VD+V GP +
Sbjct: 60 ELGKM--RKIQETKDLT-----------IVVAGCVAQAEGEQIFARAPFVDIVVGPQSIH 106
Query: 196 DLPRLLEEVDYGQKG-INTLLSLEETYADISPVR-ISKNS-VTAFVSVMRGCNNMCSFCI 252
LP L+ + +K IN + + D PV +KN V+AF+SV GCN C+FC+
Sbjct: 107 TLPELIIKARRMKKQVINIDFPIISKF-DAIPVEEYTKNQEVSAFISVQEGCNKFCTFCV 165
Query: 253 VPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDT-SGME 300
VP+TRG E SR VE+I E L GVKE+TL+GQNVN+Y+ T G E
Sbjct: 166 VPYTRGEEYSRTVEAIFNEALVLSDSGVKEITLIGQNVNAYHGTYKGCE 214
Score = 317 (116.6 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
Identities = 65/176 (36%), Positives = 100/176 (56%)
Query: 343 RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQK 402
R RYT+ HP+D L R + ++HLP Q+G+ +L++M R +T E Y+D++
Sbjct: 232 RIRYTTSHPRDMHQSLYEAHRSETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINN 291
Query: 403 IRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD 462
+R+ PD+ SSDFI GF GETEE+ T+ L++ V + AY F YS R T + Y +
Sbjct: 292 LRKQRPDIAFSSDFIVGFPGETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPS-AEYPN 350
Query: 463 DVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAP-DTELVGKSD 517
+PEE+K +R+ L E RE + +G VL NKK D +++GK++
Sbjct: 351 QIPEEIKSQRIFRLQELLREQQLAFNRNMIGQTCSVLFN--NKKGKFDNQIIGKTE 404
>UNIPROTKB|Q9KTE0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 346 (126.9 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
Identities = 75/198 (37%), Positives = 120/198 (60%)
Query: 328 FADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386
FA+LL RL + R R+T+ HP +F D+++ + D P + ++HLP Q+G+ +L
Sbjct: 218 FAELL-RLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTM 276
Query: 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMF 446
M+R +T Y +++K+R+ PD+ +SSDFI GF GET+++ DT+ L++ V +DM++ F
Sbjct: 277 MKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSF 336
Query: 447 AYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKK 506
+S R T A +Y D+ EEVK+ RL EL + + +GT Q +LVEGP+KK
Sbjct: 337 IFSPRPGTPA-ADYPCDLSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKK 395
Query: 507 APDTELVGKSDRGHRVAF 524
EL G+++ V F
Sbjct: 396 DL-MELRGRTENNRVVNF 412
Score = 346 (126.9 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
Identities = 76/212 (35%), Positives = 120/212 (56%)
Query: 82 ETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFW 141
+T+GCQMN D + ++ A E+ +PE A+V+ +NTC+IR+ A+ KV+ +L W
Sbjct: 8 KTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGR-W 66
Query: 142 FLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLL 201
++ K V G V GC+A + D I D VDV+ GP LP ++
Sbjct: 67 KTLKDKKPGVVIG-----------VGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMI 115
Query: 202 EEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRER 261
++ + + E D P ++ TAFVS+M GC+ C++C+VP+TRG E
Sbjct: 116 KQSQTSDAPVMDISFPEIEKFDRLPEPRAEGP-TAFVSIMEGCSKYCTYCVVPYTRGEEV 174
Query: 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
SRP++ ++ E+ +L ++GV+EV LLGQNVN+Y
Sbjct: 175 SRPMDDVLFEIAQLAEQGVREVNLLGQNVNAY 206
>TIGR_CMR|VC_0962 [details] [associations]
symbol:VC_0962 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 346 (126.9 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
Identities = 75/198 (37%), Positives = 120/198 (60%)
Query: 328 FADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386
FA+LL RL + R R+T+ HP +F D+++ + D P + ++HLP Q+G+ +L
Sbjct: 218 FAELL-RLVATIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTM 276
Query: 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMF 446
M+R +T Y +++K+R+ PD+ +SSDFI GF GET+++ DT+ L++ V +DM++ F
Sbjct: 277 MKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSF 336
Query: 447 AYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKK 506
+S R T A +Y D+ EEVK+ RL EL + + +GT Q +LVEGP+KK
Sbjct: 337 IFSPRPGTPA-ADYPCDLSEEVKKERLYELQQQINSQAMRYSRLMLGTEQRILVEGPSKK 395
Query: 507 APDTELVGKSDRGHRVAF 524
EL G+++ V F
Sbjct: 396 DL-MELRGRTENNRVVNF 412
Score = 346 (126.9 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
Identities = 76/212 (35%), Positives = 120/212 (56%)
Query: 82 ETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFW 141
+T+GCQMN D + ++ A E+ +PE A+V+ +NTC+IR+ A+ KV+ +L W
Sbjct: 8 KTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGR-W 66
Query: 142 FLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLL 201
++ K V G V GC+A + D I D VDV+ GP LP ++
Sbjct: 67 KTLKDKKPGVVIG-----------VGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMI 115
Query: 202 EEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRER 261
++ + + E D P ++ TAFVS+M GC+ C++C+VP+TRG E
Sbjct: 116 KQSQTSDAPVMDISFPEIEKFDRLPEPRAEGP-TAFVSIMEGCSKYCTYCVVPYTRGEEV 174
Query: 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
SRP++ ++ E+ +L ++GV+EV LLGQNVN+Y
Sbjct: 175 SRPMDDVLFEIAQLAEQGVREVNLLGQNVNAY 206
>UNIPROTKB|Q83DX3 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:227377 "Coxiella burnetii RSA
493" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 344 (126.2 bits), Expect = 1.6e-64, Sum P(2) = 1.6e-64
Identities = 80/217 (36%), Positives = 123/217 (56%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
++Y +T+GCQMN D + ++K + E+ P A+V +NTC++R+ A+ KV+ L
Sbjct: 3 KLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSEL 62
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRD 196
W R +K+ K P ++ V GC+A + + IL VD+V GP
Sbjct: 63 GR-W---RPFKE---------KRPHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHR 109
Query: 197 LPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFT 256
LP LL+ V +K + + E D P ++ +AFVS+M GC+ C+FC+VP+T
Sbjct: 110 LPDLLDSVIQKRKSVVDITFPEIEKFDRLPQPRAEGP-SAFVSIMEGCSKYCTFCVVPYT 168
Query: 257 RGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
RG E SRP + ++ EV L ++GV+E+TLLGQNVN Y
Sbjct: 169 RGEEISRPFDDVIAEVASLCEQGVREITLLGQNVNDY 205
Score = 336 (123.3 bits), Expect = 1.6e-64, Sum P(2) = 1.6e-64
Identities = 70/182 (38%), Positives = 104/182 (57%)
Query: 343 RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQK 402
R R+T+ HP F + L+ + P + ++HLP Q+G+ +L M+R YT Y ++K
Sbjct: 232 RIRFTTSHPSAFSENLIDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRK 291
Query: 403 IRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD 462
+R + PD+ LSSDFI GF GET+ + T+ L+ +G+D ++ F YS R T A + D
Sbjct: 292 LRAVRPDISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQ-LPD 350
Query: 463 DVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRV 522
DVP VK+ RL L + S VGT Q +LV GP+KK PD +L G+++ V
Sbjct: 351 DVPMAVKKERLAILQNRINAKAAEISQSMVGTQQRILVTGPSKKYPD-QLSGRTENNRVV 409
Query: 523 AF 524
F
Sbjct: 410 NF 411
>TIGR_CMR|CBU_0569 [details] [associations]
symbol:CBU_0569 "conserved hypothetical protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 344 (126.2 bits), Expect = 1.6e-64, Sum P(2) = 1.6e-64
Identities = 80/217 (36%), Positives = 123/217 (56%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
++Y +T+GCQMN D + ++K + E+ P A+V +NTC++R+ A+ KV+ L
Sbjct: 3 KLYLKTHGCQMNEYDSAKMADVLKFSHGLELTEDPAVADVFLLNTCSVREKAQTKVFSEL 62
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRD 196
W R +K+ K P ++ V GC+A + + IL VD+V GP
Sbjct: 63 GR-W---RPFKE---------KRPHVVIGVGGCVASQEGETILKQAPFVDIVFGPQTLHR 109
Query: 197 LPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFT 256
LP LL+ V +K + + E D P ++ +AFVS+M GC+ C+FC+VP+T
Sbjct: 110 LPDLLDSVIQKRKSVVDITFPEIEKFDRLPQPRAEGP-SAFVSIMEGCSKYCTFCVVPYT 168
Query: 257 RGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
RG E SRP + ++ EV L ++GV+E+TLLGQNVN Y
Sbjct: 169 RGEEISRPFDDVIAEVASLCEQGVREITLLGQNVNDY 205
Score = 336 (123.3 bits), Expect = 1.6e-64, Sum P(2) = 1.6e-64
Identities = 70/182 (38%), Positives = 104/182 (57%)
Query: 343 RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQK 402
R R+T+ HP F + L+ + P + ++HLP Q+G+ +L M+R YT Y ++K
Sbjct: 232 RIRFTTSHPSAFSENLIDAYAEEPKLANHLHLPVQSGSDRILAAMKRNYTVLEYKSKIRK 291
Query: 403 IRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD 462
+R + PD+ LSSDFI GF GET+ + T+ L+ +G+D ++ F YS R T A + D
Sbjct: 292 LRAVRPDISLSSDFIIGFPGETDADFEATMNLIHDMGFDHSFSFIYSPRPGTPAAQ-LPD 350
Query: 463 DVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRV 522
DVP VK+ RL L + S VGT Q +LV GP+KK PD +L G+++ V
Sbjct: 351 DVPMAVKKERLAILQNRINAKAAEISQSMVGTQQRILVTGPSKKYPD-QLSGRTENNRVV 409
Query: 523 AF 524
F
Sbjct: 410 NF 411
>UNIPROTKB|P0AEI1 [details] [associations]
symbol:miaB "isopentenyl-adenosine A37 tRNA methylthiolase
MiaB" species:83333 "Escherichia coli K-12" [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 EMBL:U82598 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:C64801 RefSeq:NP_415194.1 RefSeq:YP_488952.1
ProteinModelPortal:P0AEI1 SMR:P0AEI1 DIP:DIP-48018N IntAct:P0AEI1
MINT:MINT-1233637 PaxDb:P0AEI1 PRIDE:P0AEI1
EnsemblBacteria:EBESCT00000004746 EnsemblBacteria:EBESCT00000015136
GeneID:12932238 GeneID:945260 KEGG:ecj:Y75_p0651 KEGG:eco:b0661
PATRIC:32116511 EchoBASE:EB3421 EcoGene:EG13657
BioCyc:EcoCyc:G6364-MONOMER BioCyc:ECOL316407:JW0658-MONOMER
BioCyc:MetaCyc:G6364-MONOMER Genevestigator:P0AEI1 Uniprot:P0AEI1
Length = 474
Score = 347 (127.2 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 78/198 (39%), Positives = 117/198 (59%)
Query: 328 FADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386
FADLL RL + R R+T+ HP +F D+++ + RD P + ++HLP Q+G+ +L
Sbjct: 218 FADLL-RLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNL 276
Query: 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMF 446
M R +T Y +++K+R PD+ +SSDFI GF GET E+ T+ L+ V +DM+Y F
Sbjct: 277 MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSF 336
Query: 447 AYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKK 506
+S R T A + VDDVPEE K++RL L E + +GT Q +LVEG ++K
Sbjct: 337 IFSARPGTPA-ADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRK 395
Query: 507 APDTELVGKSDRGHRVAF 524
+ EL G+++ V F
Sbjct: 396 SI-MELSGRTENNRVVNF 412
Score = 324 (119.1 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 77/218 (35%), Positives = 124/218 (56%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNA-GYSEVINVPENAEVIFINTCAIRDYAEHKVWQR 136
+++ +T+GCQMN D + ++ GY ++ +V E A+V+ +NTC+IR+ A+ KV+ +
Sbjct: 4 KLHIKTWGCQMNEYDSSKMADLLDATHGY-QLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 137 LNYFWFLKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYR 195
L W L +E K+P I+ V GC+A + + I VD++ GP
Sbjct: 63 LGR-WKLLKE------------KNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLH 109
Query: 196 DLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPF 255
LP ++ V + + + E D P ++ TAFVS+M GCN C++C+VP+
Sbjct: 110 RLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGP-TAFVSIMEGCNKYCTYCVVPY 168
Query: 256 TRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293
TRG E SRP + I+ E+ +L +GV+EV LLGQNVN++
Sbjct: 169 TRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAW 206
>TIGR_CMR|NSE_0832 [details] [associations]
symbol:NSE_0832 "tRNA-i(6)A37 modification enzyme MiaB"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_506702.1
ProteinModelPortal:Q2GCU4 STRING:Q2GCU4 GeneID:3932248
KEGG:nse:NSE_0832 PATRIC:22681657 ProtClustDB:CLSK2528018
BioCyc:NSEN222891:GHFU-838-MONOMER Uniprot:Q2GCU4
Length = 471
Score = 346 (126.9 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 81/227 (35%), Positives = 127/227 (55%)
Query: 74 HSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKV 133
+S + + +TYGCQMNV D E++ I+ G++ + E+A++I +NTC IR+ A K+
Sbjct: 26 NSLKKFHIKTYGCQMNVYDSEMIEKIVSGLGFT-LSERAEDADLIILNTCNIREKAAEKL 84
Query: 134 WQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDA 193
+ L L+++ ++ + IVV GC+A+ ++I+ + VDVV GP +
Sbjct: 85 YSELGQIRLLQKKKQERIL-----------IVVAGCVAQAEGEEIMRRAENVDVVVGPQS 133
Query: 194 YRDLPRLLEEVD-YGQKGINTLLSLEETYADISPVRISKNSV---TAFVSVMRGCNNMCS 249
LP L+ +V+ K I E + D K V +AF+S+ GC+ C+
Sbjct: 134 IHSLPELIAKVNRQSGKAIKMEFDPIEKF-DYLAEETRKRRVPQSSAFLSIQEGCDKFCA 192
Query: 250 FCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDT 296
FC+VP+TRG E SR E + +E L +GVKE+TLLGQNVN Y+ T
Sbjct: 193 FCVVPYTRGAEYSRSTEEVYREALSLTTKGVKEITLLGQNVNGYHGT 239
Score = 266 (98.7 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 63/193 (32%), Positives = 99/193 (51%)
Query: 326 LRFADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVL 384
L L+ RL + P + R RYT+ HP D EL + + ++HLP Q+G+ +L
Sbjct: 247 LNLGQLISRLG-KIPSLKRIRYTTSHPVDMHKELYDAHANESKLMPFVHLPVQSGSDKIL 305
Query: 385 ERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAY 444
++M R YT YL ++ + + D+ SSDFI GF GE++++ TL L++ V Y Y
Sbjct: 306 KQMNRKYTTADYLKIINEFQNARSDIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCY 365
Query: 445 MFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPN 504
F YS R T Y + EE K RL +L + +E + +G VL +
Sbjct: 366 SFKYSPRPGTPG-ATY-PQISEETKNTRLQKLQQLLKEKQLEFNKKMIGKTVTVLFD--- 420
Query: 505 KKAPDTELVGKSD 517
KK PD ++ G+++
Sbjct: 421 KKHPD-KISGRTE 432
>UNIPROTKB|H0Y721 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR006638 InterPro:IPR013848 PROSITE:PS51449 SMART:SM00729
GO:GO:0003824 GO:GO:0051539 EMBL:AL355392 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
Pfam:PF01938 HGNC:HGNC:15880 ChiTaRS:CDK5RAP1
ProteinModelPortal:H0Y721 PRIDE:H0Y721 Ensembl:ENST00000427097
Bgee:H0Y721 Uniprot:H0Y721
Length = 256
Score = 377 (137.8 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 78/151 (51%), Positives = 104/151 (68%)
Query: 374 LPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLT 433
+P QT SA + Y+REAY++LV IR+ IP V LSSDFI GFCGETEE+H T++
Sbjct: 58 MPVQTSASATSAFV---YSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVS 114
Query: 434 LMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVG 493
L++ V Y+M ++FAYSMR++T A+ DDVPEEVK RRL ELI FRE + + VG
Sbjct: 115 LLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVG 174
Query: 494 TVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524
QLVLVEG +K++ T+L G++D +V F
Sbjct: 175 CTQLVLVEGLSKRSA-TDLCGRNDGNLKVIF 204
Score = 231 (86.4 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 43/70 (61%), Positives = 57/70 (81%)
Query: 169 CMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVR 228
CMAERLK++IL+ +KMVD++ GPDAYRDLPRLL + GQ+ N LLSL+ETYAD+ PV+
Sbjct: 2 CMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMPVQ 61
Query: 229 ISKNSVTAFV 238
S ++ +AFV
Sbjct: 62 TSASATSAFV 71
>TIGR_CMR|DET_1385 [details] [associations]
symbol:DET_1385 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 KO:K06168 OMA:RDSEHII RefSeq:YP_182095.1
ProteinModelPortal:Q3Z6Q4 STRING:Q3Z6Q4 GeneID:3229346
KEGG:det:DET1385 PATRIC:21609799 ProtClustDB:PRK14336
BioCyc:DETH243164:GJNF-1386-MONOMER Uniprot:Q3Z6Q4
Length = 418
Score = 318 (117.0 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 78/190 (41%), Positives = 106/190 (55%)
Query: 329 ADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387
ADLL LS + P + R R+ + HPKD +L+ M VC + LP Q G +L M
Sbjct: 194 ADLLYALS-DIPGLLRIRFLTSHPKDISQKLIDAMASLHKVCHSLSLPVQAGADTILAAM 252
Query: 388 RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFA 447
RRGYT E Y +LV +++ +PD+ L +D I GF ET E+ + LM +GYD ++ A
Sbjct: 253 RRGYTSEQYRELVGRLKTAMPDISLQTDLIVGFPSETAEQFDQSYKLMSDIGYDAIHVAA 312
Query: 448 YSMRERTHAHRNYVDDVPEEVKQRRLTELIEAF-RESTGQCYDSQVGTVQLVLVEGPNK- 505
YS R +T A R+ DDVP K+RRL +LIE +E+ + + V T VLVEG K
Sbjct: 313 YSPRPQTAAARDMADDVPVAEKKRRL-KLIEDLQKETVSKANSALVDTFAEVLVEGRQKN 371
Query: 506 KAPDTELVGK 515
K L GK
Sbjct: 372 KWQGRTLGGK 381
Score = 182 (69.1 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 231 KNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNV 290
K V+A +++M+GC+N C++CIVP+ RGRE+SR + + E EL + G +EV LLGQNV
Sbjct: 121 KPPVSASITIMQGCDNFCTYCIVPYRRGREKSRSISELCCEAAELVRRGSREVVLLGQNV 180
Query: 291 NSY 293
+SY
Sbjct: 181 DSY 183
Score = 114 (45.2 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 36/118 (30%), Positives = 58/118 (49%)
Query: 80 YQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNY 139
Y T GCQMN + E + + + GYS + + E+AE++ +N+C +R++AE+KV RL+
Sbjct: 5 YLWTIGCQMNQAESERLGRLFELWGYS-LADKAEDAELVLVNSCVVREHAENKVINRLHI 63
Query: 140 FWFLKREWKKNVATGRSQSKHPP-KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRD 196
LK K+P KI + GC+ + + VD + P A D
Sbjct: 64 LRKLK-------------DKNPRLKIALTGCLVGQDIASVRKKFPFVDYIFQPGALPD 108
>TIGR_CMR|CJE_0508 [details] [associations]
symbol:CJE_0508 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_178526.1 ProteinModelPortal:Q5HW09 STRING:Q5HW09
GeneID:3231269 KEGG:cjr:CJE0508 PATRIC:20042728
ProtClustDB:PRK14339 BioCyc:CJEJ195099:GJC0-518-MONOMER
Uniprot:Q5HW09
Length = 433
Score = 314 (115.6 bits), Expect = 5.0e-43, Sum P(2) = 5.0e-43
Identities = 80/231 (34%), Positives = 127/231 (54%)
Query: 300 EKEVEPGAN--WRLSEGFNSMCKV-----KKMGLRFADLLDRLS-LEFPEMRFRYTSPHP 351
+K VE GA + L + N+ K KKM F+DLL+ LS +E E R R+TSPHP
Sbjct: 180 QKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMD--FSDLLEELSTIEDLE-RIRFTSPHP 236
Query: 352 KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG 411
D+ L + + P VCK +H+P Q+G+S +L+ M+RGYT+E YL+ K+R++ P+V
Sbjct: 237 LHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKLRELCPNVS 296
Query: 412 LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQR 471
+S+D I F GE+E++ +T+ +++ V ++ + F YS R T A + + EE R
Sbjct: 297 ISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKA-ATMPNQIDEETASR 355
Query: 472 RLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRV 522
RL+ L E + Q VL E +A ++ + G++D V
Sbjct: 356 RLSTLQNRHSEILDEIVKKQENKTFKVLFE--ELRAGNS-IAGRTDNNFLV 403
Score = 182 (69.1 bits), Expect = 5.0e-43, Sum P(2) = 5.0e-43
Identities = 46/136 (33%), Positives = 73/136 (53%)
Query: 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLE 218
K KI V GC A L ++I VD V G R++ ++ + + K + + +
Sbjct: 72 KEGAKIGVCGCTASHLGNEIFKRAPYVDFVLGA---RNISKITQAIKT-PKFMGVDIDYD 127
Query: 219 ETYADISPVRISKNSV-TAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWK 277
E+ + R NS+ +++++ GC+ C++CIVP TRG E S P I KE + +
Sbjct: 128 ESEFAFADFR---NSIYKSYINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEAQKAVE 184
Query: 278 EGVKEVTLLGQNVNSY 293
+G KE+ LLGQNVN+Y
Sbjct: 185 KGAKEIFLLGQNVNNY 200
Score = 129 (50.5 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 53/209 (25%), Positives = 94/209 (44%)
Query: 75 SQGRIYQETYGCQMNVNDME-IVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKV 133
S +++ +T GC MNV D E ++ + + Y+ ++ E A++I INTC++R+ HK+
Sbjct: 2 SAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKE-ADLILINTCSVREKPVHKL 60
Query: 134 WQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDA 193
+ + F +K+E G KI V GC A L ++I VD V G
Sbjct: 61 FSEVGGFEKVKKE-------GA-------KIGVCGCTASHLGNEIFKRAPYVDFVLGARN 106
Query: 194 YRDLPRLLE-------EVDYGQKGI---NTLLSLEETYADISPVRISKNSVTAFVSVMRG 243
+ + ++ ++DY + + S+ ++Y +IS + K+ V RG
Sbjct: 107 ISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINIS-IGCDKHCTYCIVPHTRG 165
Query: 244 CNNMCSFCIVPFTRGRERSRPVESIVKEV 272
F I+ +E + VE KE+
Sbjct: 166 DEISIPFNIIY----KEAQKAVEKGAKEI 190
>UNIPROTKB|P54462 [details] [associations]
symbol:mtaB "Threonylcarbamoyladenosine tRNA
methylthiotransferase MtaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035598 "N6-threonylcarbomyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:D84432 TIGRFAMs:TIGR01579 EMBL:D83717 PIR:E69952
RefSeq:NP_390421.1 ProteinModelPortal:P54462 SMR:P54462
EnsemblBacteria:EBBACT00000000539 GeneID:937857 KEGG:bsu:BSU25430
PATRIC:18976924 GenoList:BSU25430 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 BioCyc:BSUB:BSU25430-MONOMER GO:GO:0035598
Uniprot:P54462
Length = 451
Score = 259 (96.2 bits), Expect = 7.5e-38, Sum P(2) = 7.5e-38
Identities = 67/202 (33%), Positives = 104/202 (51%)
Query: 328 FADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386
FA LL L + R R +S DE++ ++ + ++H+P Q+G++ VL+R
Sbjct: 211 FAKLLSELDTRVEGVKRIRISSIEASQITDEVIEVLDRSDKIVNHLHIPIQSGSNTVLKR 270
Query: 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMF 446
MRR YT E + D + K+++ +P + ++SD I GF GETEEE +T +K + ++F
Sbjct: 271 MRRKYTMEFFADRLNKLKKALPGLAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVF 330
Query: 447 AYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKK 506
YS R T A R D V E VK R+ LI A + + Y SQ L ++ P +
Sbjct: 331 PYSKRTGTPAAR-MEDQVDENVKNERVHRLI-ALSDQLAKEYASQYENEVLEII--PEEA 386
Query: 507 APDTE----LVGKSDRGHRVAF 524
+TE VG +D +V F
Sbjct: 387 FKETEEENMFVGYTDNYMKVVF 408
Score = 214 (80.4 bits), Expect = 7.5e-38, Sum P(2) = 7.5e-38
Identities = 62/220 (28%), Positives = 108/220 (49%)
Query: 83 TYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142
T GC++N + E + + K AGY E + + A+V INTC + + + K Q
Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGY-ERRDFEQTADVYVINTCTVTNTGDKKSRQ------V 60
Query: 143 LKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLL 201
++R ++N P ++ V GC A+ +I+ A VD+V G +D ++L
Sbjct: 61 IRRAIRQN----------PDGVICVTGCYAQTSPAEIM-AIPGVDIVVGT---QDREKML 106
Query: 202 EEVD-YGQK-----GINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPF 255
+D Y ++ G++ ++ Y ++ V + A + + GCNN C+FCI+P+
Sbjct: 107 GYIDQYREERQPINGVSNIMKAR-VYEELD-VPAFTDRTRASLKIQEGCNNFCTFCIIPW 164
Query: 256 TRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYND 295
RG RSR E ++K+ +L G KE+ L G + Y +
Sbjct: 165 ARGLLRSRDPEEVIKQAQQLVDAGYKEIVLTGIHTGGYGE 204
>UNIPROTKB|Q81LS6 [details] [associations]
symbol:BAS4209 "Uncharacterized protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 255 (94.8 bits), Expect = 8.9e-38, Sum P(2) = 8.9e-38
Identities = 65/199 (32%), Positives = 105/199 (52%)
Query: 329 ADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387
A LL + E + R R +S DE++ ++ V +++H+P Q+G++ VL+RM
Sbjct: 212 AGLLRDMEAEVGGLKRLRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRM 271
Query: 388 RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFA 447
RR YT E + + + ++++ +P + ++SD I GF GETEEE +T +K + ++F
Sbjct: 272 RRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFP 331
Query: 448 YSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKA 507
YS R T A R D VPE+VK R+ LIE + + Y SQ L ++ K
Sbjct: 332 YSKRTGTPAAR-MEDQVPEDVKNDRVHRLIELSNQLAKE-YASQFEGEVLEIIPEEQFKE 389
Query: 508 PDTE--LVGKSDRGHRVAF 524
D E VG +D ++ F
Sbjct: 390 GDREGLYVGYTDNYLKIVF 408
Score = 218 (81.8 bits), Expect = 8.9e-38, Sum P(2) = 8.9e-38
Identities = 60/216 (27%), Positives = 104/216 (48%)
Query: 83 TYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142
T GC++N + E + + K GY E + A+V INTC + + + K Q
Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGY-ERTEYEKKADVYVINTCTVTNTGDKKSRQ------V 60
Query: 143 LKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLL 201
++R ++N P ++ V GC A+ +I+ A VD+V G + +
Sbjct: 61 IRRAVRQN----------PDAVICVTGCYAQTSPAEIM-AIPGVDIVVGTQDREKMLGYI 109
Query: 202 EEVDYGQKGINTLLSLEET--YADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGR 259
EE ++ IN + ++ +T Y ++ V + A + + GCNN C+FCI+P+ RG
Sbjct: 110 EEFRKERQPINAVRNIMKTRVYEELD-VPYFTDRTRASLKIQEGCNNFCTFCIIPWARGL 168
Query: 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYND 295
RSR + ++K+ +L G KE+ L G + Y +
Sbjct: 169 MRSRDGKEVIKQAQQLVDAGYKEIVLTGIHTGGYGE 204
>TIGR_CMR|BA_4535 [details] [associations]
symbol:BA_4535 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 255 (94.8 bits), Expect = 8.9e-38, Sum P(2) = 8.9e-38
Identities = 65/199 (32%), Positives = 105/199 (52%)
Query: 329 ADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387
A LL + E + R R +S DE++ ++ V +++H+P Q+G++ VL+RM
Sbjct: 212 AGLLRDMEAEVGGLKRLRISSIEASQISDEVIEVLDKSEVVVRHLHIPLQSGSNTVLKRM 271
Query: 388 RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFA 447
RR YT E + + + ++++ +P + ++SD I GF GETEEE +T +K + ++F
Sbjct: 272 RRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPGETEEEFMETYNFIKENRFSELHVFP 331
Query: 448 YSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKA 507
YS R T A R D VPE+VK R+ LIE + + Y SQ L ++ K
Sbjct: 332 YSKRTGTPAAR-MEDQVPEDVKNDRVHRLIELSNQLAKE-YASQFEGEVLEIIPEEQFKE 389
Query: 508 PDTE--LVGKSDRGHRVAF 524
D E VG +D ++ F
Sbjct: 390 GDREGLYVGYTDNYLKIVF 408
Score = 218 (81.8 bits), Expect = 8.9e-38, Sum P(2) = 8.9e-38
Identities = 60/216 (27%), Positives = 104/216 (48%)
Query: 83 TYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142
T GC++N + E + + K GY E + A+V INTC + + + K Q
Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGY-ERTEYEKKADVYVINTCTVTNTGDKKSRQ------V 60
Query: 143 LKREWKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLL 201
++R ++N P ++ V GC A+ +I+ A VD+V G + +
Sbjct: 61 IRRAVRQN----------PDAVICVTGCYAQTSPAEIM-AIPGVDIVVGTQDREKMLGYI 109
Query: 202 EEVDYGQKGINTLLSLEET--YADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGR 259
EE ++ IN + ++ +T Y ++ V + A + + GCNN C+FCI+P+ RG
Sbjct: 110 EEFRKERQPINAVRNIMKTRVYEELD-VPYFTDRTRASLKIQEGCNNFCTFCIIPWARGL 168
Query: 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYND 295
RSR + ++K+ +L G KE+ L G + Y +
Sbjct: 169 MRSRDGKEVIKQAQQLVDAGYKEIVLTGIHTGGYGE 204
>UNIPROTKB|Q747R0 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 231 (86.4 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 58/171 (33%), Positives = 92/171 (53%)
Query: 350 HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPD 409
+P D L+ +++ P VCKY+ LP Q + +L+RM R T +LV ++R+ IPD
Sbjct: 241 YPDGITDGLIQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREEIPD 300
Query: 410 VGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469
+ L + I GF GETEE+ L ++ +D +F YS E T A D V E VK
Sbjct: 301 IALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPA-AEMPDQVSERVK 359
Query: 470 QRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELV--GKSDR 518
+ R +L++A + + + T + V+VEG ++ +TEL+ G+S R
Sbjct: 360 RERYKKLMKAQARVSFKRNRRLIDTEEQVIVEGYSE---ETELLLKGRSSR 407
Score = 224 (83.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 56/228 (24%), Positives = 112/228 (49%)
Query: 74 HSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCA-IRDYAEHK 132
+++ ++ + GC N+ D E++L + Y E+ A++I +NTC+ I++ +
Sbjct: 3 NAKEKVSMVSLGCPKNLVDAEVMLGRLAKDRY-EITTDEREADIIIVNTCSFIKEAKQES 61
Query: 133 VWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192
+ L+ R Q ++V GC+ +R ++++ VD+ G
Sbjct: 62 IDTILDL-------------ADRKQDGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTG 108
Query: 193 AYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKN-SVTAFVSVMRGCNNMCSFC 251
Y + ++EE + + + + D S R++ + + TA++ + GC+N CS+C
Sbjct: 109 DYPRIAEIIEEKSSRPEQLRYIGDPNFVF-DESLTRLNSSPAYTAYLKIAEGCSNCCSYC 167
Query: 252 IVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYN-DTSG 298
++P RG RSRP+ES++ E L G +E+ L+ Q++ +Y D G
Sbjct: 168 VIPSLRGAFRSRPLESVLAEARSLVAGGAREINLIAQDITTYGRDLPG 215
>TIGR_CMR|GSU_3205 [details] [associations]
symbol:GSU_3205 "MiaB-like tRNA modifying enzyme YliG"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 231 (86.4 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 58/171 (33%), Positives = 92/171 (53%)
Query: 350 HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPD 409
+P D L+ +++ P VCKY+ LP Q + +L+RM R T +LV ++R+ IPD
Sbjct: 241 YPDGITDGLIQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREEIPD 300
Query: 410 VGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469
+ L + I GF GETEE+ L ++ +D +F YS E T A D V E VK
Sbjct: 301 IALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPA-AEMPDQVSERVK 359
Query: 470 QRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELV--GKSDR 518
+ R +L++A + + + T + V+VEG ++ +TEL+ G+S R
Sbjct: 360 RERYKKLMKAQARVSFKRNRRLIDTEEQVIVEGYSE---ETELLLKGRSSR 407
Score = 224 (83.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 56/228 (24%), Positives = 112/228 (49%)
Query: 74 HSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCA-IRDYAEHK 132
+++ ++ + GC N+ D E++L + Y E+ A++I +NTC+ I++ +
Sbjct: 3 NAKEKVSMVSLGCPKNLVDAEVMLGRLAKDRY-EITTDEREADIIIVNTCSFIKEAKQES 61
Query: 133 VWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192
+ L+ R Q ++V GC+ +R ++++ VD+ G
Sbjct: 62 IDTILDL-------------ADRKQDGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTG 108
Query: 193 AYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKN-SVTAFVSVMRGCNNMCSFC 251
Y + ++EE + + + + D S R++ + + TA++ + GC+N CS+C
Sbjct: 109 DYPRIAEIIEEKSSRPEQLRYIGDPNFVF-DESLTRLNSSPAYTAYLKIAEGCSNCCSYC 167
Query: 252 IVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYN-DTSG 298
++P RG RSRP+ES++ E L G +E+ L+ Q++ +Y D G
Sbjct: 168 VIPSLRGAFRSRPLESVLAEARSLVAGGAREINLIAQDITTYGRDLPG 215
>TIGR_CMR|APH_0880 [details] [associations]
symbol:APH_0880 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 RefSeq:YP_505456.1
ProteinModelPortal:Q2GJJ5 STRING:Q2GJJ5 GeneID:3929963
KEGG:aph:APH_0880 PATRIC:20950460 KO:K06168 OMA:RDSEHII
ProtClustDB:CLSK747303 BioCyc:APHA212042:GHPM-893-MONOMER
Uniprot:Q2GJJ5
Length = 444
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 81/218 (37%), Positives = 128/218 (58%)
Query: 79 IYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLN 138
+Y E+YGCQMNV D ++ +++ GY+ V PE+A++I INTC IR+ A K++ L
Sbjct: 5 LYIESYGCQMNVYDALMMEDLLRPVGYAAVSR-PEDADIILINTCHIREKASEKLYSTLG 63
Query: 139 YFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLP 198
+K+E + + ++V GC+A+ + + + V+VV GP LP
Sbjct: 64 RMRVIKKE--ECI------------LIVAGCVAQAEGEAVFERAPYVNVVVGPQGLHTLP 109
Query: 199 RLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRG 258
L+ +V +K IN + + IS R + V+A+VS+ GC+ C+FC+VP+TRG
Sbjct: 110 ELIMKVKRDKKQINIEFPVVSKFDAISIDRKANGGVSAYVSIQEGCDKFCTFCVVPYTRG 169
Query: 259 RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDT 296
E SR VE+I++EV +L G KE+ L+GQNVN+Y+ T
Sbjct: 170 PEYSRDVEAILEEVKQLTDRGTKEIVLIGQNVNAYHGT 207
Score = 311 (114.5 bits), Expect = 5.5e-26, P = 5.5e-26
Identities = 101/349 (28%), Positives = 165/349 (47%)
Query: 177 KILDADKMVDVVCGPDAYRDLPRLLEEVDY-----GQKGINTLLSL-EETYADISPVRIS 230
+++ ++ + +V G A + + E Y G +G++TL L + D + I
Sbjct: 66 RVIKKEECILIVAGCVAQAEGEAVFERAPYVNVVVGPQGLHTLPELIMKVKRDKKQINIE 125
Query: 231 KNSVTAF--VSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQ 288
V+ F +S+ R N S V G ++ +V E ++V + +
Sbjct: 126 FPVVSKFDAISIDRKANGGVS-AYVSIQEGCDKFCTF-CVVPYTRG--PEYSRDVEAILE 181
Query: 289 NVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTS 348
V D G ++ V G N ++ K + L L+ ++SL R RYT+
Sbjct: 182 EVKQLTDR-GTKEIVLIGQN---VNAYHGTYKGNEWDL--GKLIQKVSLIDGVERIRYTT 235
Query: 349 PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIP 408
HP+D L RD + ++HLP Q+G+ A+L +M R +T E YL +V++++
Sbjct: 236 SHPRDMHPSLYEAHRDEKKLAPFVHLPVQSGSDAILRKMNRKHTAEEYLRVVEQLKDSNK 295
Query: 409 DVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEV 468
++ LSSDFI GF GETE++ +T+ L+++VG+ ++Y F YS R T Y + VPEE
Sbjct: 296 NMALSSDFIVGFPGETEKDFEETMKLVESVGFALSYSFKYSPRPGTPG-AEYSNQVPEEE 354
Query: 469 KQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSD 517
K RL L + Q S G V VLV P+ D + GKS+
Sbjct: 355 KSARLAALQGLLTKQQLQFNKSMEGRVMDVLVGDPSSMRSD-RIFGKSE 402
>UNIPROTKB|Q74A23 [details] [associations]
symbol:mtaB "tRNA (2-methylthio-N6-threonylcarbamyl-A37)
methylthiotransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0009451 TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579
HOGENOM:HOG000224765 OMA:VITFGCR RefSeq:NP_953614.1
ProteinModelPortal:Q74A23 GeneID:2686393 KEGG:gsu:GSU2568
PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 235 (87.8 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 53/152 (34%), Positives = 83/152 (54%)
Query: 330 DLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389
DLL+ E R R S P + D L+ +M P +C ++H+P Q+G+ +VLERM R
Sbjct: 212 DLLEAADAEALVPRLRVGSVEPHEISDGLIALMARSPVICPHLHIPLQSGSDSVLERMNR 271
Query: 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449
YT + + V+++ +PD+ + D I GF GET+EE A TL L++ + ++F +S
Sbjct: 272 RYTAAFFRERVERLAAAVPDICIGCDVIAGFPGETDEEFAATLALLEGLPIAHLHVFPFS 331
Query: 450 MRERTHAHRNYVDDVPEEVKQRRLTELIEAFR 481
RE T A R +P +V + + E E R
Sbjct: 332 RREGTPAAR-----MPGQVDGKIVRERAEVLR 358
Score = 163 (62.4 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 39/140 (27%), Positives = 73/140 (52%)
Query: 155 RSQSKHPP-KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT 213
R+ ++P ++VV GC A+ D + + V +V G + + LL + +K + +
Sbjct: 63 RAMRRNPAARVVVTGCYAQVAPDAVGELPG-VSLVVGNSEKKGIAGLLRDAVPAEKILVS 121
Query: 214 LLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD 273
+S + T + ++++ AF+ V GC+ CS+CIVP RGR RS P +++ +
Sbjct: 122 DISRQRTVEALGLESFAEHT-RAFLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIG 180
Query: 274 ELWKEGVKEVTLLGQNVNSY 293
+G +EV L G ++ +Y
Sbjct: 181 TFAYQGFREVVLTGIHLGAY 200
Score = 72 (30.4 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 33/145 (22%), Positives = 65/145 (44%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAI--RDYAEHKVWQ 135
R+ T GC++N + + + G+ ++ + A++ INTC + R AE +
Sbjct: 3 RVAITTLGCKINQFESAAMTESLGREGF-RLVPFEDEADIYVINTCTVTARTDAESR--- 58
Query: 136 RLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYR 195
RL ++R ++N A ++VV GC A+ D + + V +V G +
Sbjct: 59 RL-----IRRAMRRNPAA---------RVVVTGCYAQVAPDAVGELPG-VSLVVGNSEKK 103
Query: 196 DLPRLLEEVDYGQKGINTLLSLEET 220
+ LL + +K + + +S + T
Sbjct: 104 GIAGLLRDAVPAEKILVSDISRQRT 128
>TIGR_CMR|GSU_2568 [details] [associations]
symbol:GSU_2568 "MiaB-like tRNA modifying enzyme"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 GO:GO:0009451 TIGRFAMs:TIGR00089
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:VITFGCR
RefSeq:NP_953614.1 ProteinModelPortal:Q74A23 GeneID:2686393
KEGG:gsu:GSU2568 PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 235 (87.8 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 53/152 (34%), Positives = 83/152 (54%)
Query: 330 DLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389
DLL+ E R R S P + D L+ +M P +C ++H+P Q+G+ +VLERM R
Sbjct: 212 DLLEAADAEALVPRLRVGSVEPHEISDGLIALMARSPVICPHLHIPLQSGSDSVLERMNR 271
Query: 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449
YT + + V+++ +PD+ + D I GF GET+EE A TL L++ + ++F +S
Sbjct: 272 RYTAAFFRERVERLAAAVPDICIGCDVIAGFPGETDEEFAATLALLEGLPIAHLHVFPFS 331
Query: 450 MRERTHAHRNYVDDVPEEVKQRRLTELIEAFR 481
RE T A R +P +V + + E E R
Sbjct: 332 RREGTPAAR-----MPGQVDGKIVRERAEVLR 358
Score = 163 (62.4 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 39/140 (27%), Positives = 73/140 (52%)
Query: 155 RSQSKHPP-KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT 213
R+ ++P ++VV GC A+ D + + V +V G + + LL + +K + +
Sbjct: 63 RAMRRNPAARVVVTGCYAQVAPDAVGELPG-VSLVVGNSEKKGIAGLLRDAVPAEKILVS 121
Query: 214 LLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD 273
+S + T + ++++ AF+ V GC+ CS+CIVP RGR RS P +++ +
Sbjct: 122 DISRQRTVEALGLESFAEHT-RAFLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIG 180
Query: 274 ELWKEGVKEVTLLGQNVNSY 293
+G +EV L G ++ +Y
Sbjct: 181 TFAYQGFREVVLTGIHLGAY 200
Score = 72 (30.4 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 33/145 (22%), Positives = 65/145 (44%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAI--RDYAEHKVWQ 135
R+ T GC++N + + + G+ ++ + A++ INTC + R AE +
Sbjct: 3 RVAITTLGCKINQFESAAMTESLGREGF-RLVPFEDEADIYVINTCTVTARTDAESR--- 58
Query: 136 RLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYR 195
RL ++R ++N A ++VV GC A+ D + + V +V G +
Sbjct: 59 RL-----IRRAMRRNPAA---------RVVVTGCYAQVAPDAVGELPG-VSLVVGNSEKK 103
Query: 196 DLPRLLEEVDYGQKGINTLLSLEET 220
+ LL + +K + + +S + T
Sbjct: 104 GIAGLLRDAVPAEKILVSDISRQRT 128
>TAIR|locus:2030342 [details] [associations]
symbol:AT1G72090 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0043412 "macromolecule modification" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
InterPro:IPR005839 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005783
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016020 GO:GO:0016740
GO:GO:0051539 eggNOG:COG0621 HOGENOM:HOG000224768 Gene3D:3.80.30.20
InterPro:IPR006466 InterPro:IPR023404 InterPro:IPR002792
TIGRFAMs:TIGR01578 PROSITE:PS50926 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:DVPAFTD EMBL:AC069273 EMBL:AF367274
EMBL:BT002712 IPI:IPI00526826 PIR:B96744 RefSeq:NP_565035.1
UniGene:At.17477 ProteinModelPortal:Q9C7H2 SMR:Q9C7H2 PaxDb:Q9C7H2
PRIDE:Q9C7H2 ProMEX:Q9C7H2 EnsemblPlants:AT1G72090.1 GeneID:843540
KEGG:ath:AT1G72090 TAIR:At1g72090 InParanoid:Q9C7H2
PhylomeDB:Q9C7H2 ProtClustDB:CLSN2689155 Genevestigator:Q9C7H2
Uniprot:Q9C7H2
Length = 601
Score = 199 (75.1 bits), Expect = 6.0e-28, Sum P(3) = 6.0e-28
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 322 KKMGLRFADLLDRLSLEFPE-----MRFRYTSPHP--KDFPDELLYIMRDRPNVCKYIHL 374
+ +G+ LL+ + E P +R T+P P + E+ ++R P V ++H+
Sbjct: 258 RDIGVNLPILLNAIVKELPSDQSTMLRIGMTNP-PFILEHLKEIAAVLR-HPCVYTFLHV 315
Query: 375 PAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTL 434
P Q+G+ +VL M R YT + +V + +++P + +++D ICGF GET+E+ + T+ L
Sbjct: 316 PVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDIICGFPGETDEDFSQTVEL 375
Query: 435 MKAVGYDMAYMFAYSMRERTHAHR-NYVDDVPEEVKQRRLTELIEAFRESTG-QCYDSQV 492
+K + ++ + R T A + V + + R LT + EAF TG +C + ++
Sbjct: 376 IKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTSVFEAFAPYTGMECREERI 435
Query: 493 GTVQLVLVEG 502
+ V +G
Sbjct: 436 WITE-VATDG 444
Score = 137 (53.3 bits), Expect = 6.0e-28, Sum P(3) = 6.0e-28
Identities = 40/150 (26%), Positives = 72/150 (48%)
Query: 151 VATGRSQSKHPPKIVVLGCMAERLKD-KILDADKMVDVVCGPDAYRDLPRLLEEVDYGQK 209
+ GRS K P +V+ GC+ + +D K L+ +V V + + R++E V+ K
Sbjct: 123 ITRGRS-GKKP--LVIAGCVPQGSRDLKELEGVSVVGV-------QQIDRVVEIVEETLK 172
Query: 210 GINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIV 269
G L +T + ++ +N+ + + GC C++C RG S V+S+V
Sbjct: 173 GHEVRLLTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLV 232
Query: 270 KEVDELWKEGVKEVTLLGQNVNSYNDTSGM 299
+ V + EGVKE+ L ++ +Y G+
Sbjct: 233 ERVRTVISEGVKEIWLSSEDTGAYGRDIGV 262
Score = 97 (39.2 bits), Expect = 6.0e-28, Sum P(3) = 6.0e-28
Identities = 29/95 (30%), Positives = 47/95 (49%)
Query: 35 LP-DGPGLHHFIAQSSLTASQPLADLAPASEVSSATGSEVHSQGR--IYQETYGCQMNVN 91
LP + G++ +S +S+P D AS S + G IY +T+GC N +
Sbjct: 21 LPLNAVGINPKTNKSKRISSKP--DQITASNRDSLAPPSMKIPGTQTIYIKTFGCSHNQS 78
Query: 92 DMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIR 126
D E + + GY+ + VPE A++ INTC ++
Sbjct: 79 DSEYMAGQLSAFGYA-LTEVPEEADLWLINTCTVK 112
>TIGR_CMR|CHY_1164 [details] [associations]
symbol:CHY_1164 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125
RefSeq:YP_360009.1 ProteinModelPortal:Q3ACX5 STRING:Q3ACX5
GeneID:3726572 KEGG:chy:CHY_1164 PATRIC:21275468 KO:K14441
BioCyc:CHYD246194:GJCN-1163-MONOMER Uniprot:Q3ACX5
Length = 438
Score = 199 (75.1 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 47/149 (31%), Positives = 80/149 (53%)
Query: 159 KHP-PKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSL 217
K P KI+V GC+ +R ++ VD+ P +L +LL D G+ N L+
Sbjct: 67 KKPGQKILVAGCLVQREGKELAKHLPEVDLFFTPREINNLDKLL--ADLGEN--NKLVLS 122
Query: 218 EETYADISPV-RISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELW 276
E + ++ R N V ++ + GC+N C++C +P RG+ SRP++ I++E+ +
Sbjct: 123 EPGFLNLEKKPRAKSNEVYRYIKIADGCDNRCTYCTIPAIRGKYTSRPLDDILEEIKDTL 182
Query: 277 KEGVKEVTLLGQNVNSYN-DTSGMEKEVE 304
K+G+KE+ L+ Q+ +Y D G K VE
Sbjct: 183 KQGIKEIILVAQDTTAYGIDLYGEFKLVE 211
Score = 182 (69.1 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 44/152 (28%), Positives = 82/152 (53%)
Query: 350 HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPD 409
+P EL+ +++ P V KY+ +P Q + +L++M R + E + ++++R+ IPD
Sbjct: 231 YPDKITPELINEIKENPKVIKYVDVPLQHIHPEILKKMGRKGSSEEIISTLERLRKEIPD 290
Query: 410 VGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469
+ + + FI GF GETEE+ L +K ++ F Y + T A + +P++VK
Sbjct: 291 ITIRTTFIVGFPGETEEQFNYLLDFVKKFKFNRLGAFPYYREKGTPAAK-MKGQIPKKVK 349
Query: 470 QRRLTELIEAFRESTGQCYDSQVGTVQLVLVE 501
++R +L+E +E + + VG V+VE
Sbjct: 350 EQRYEKLMEVQQEISLNLNKALVGKKIPVIVE 381
Score = 105 (42.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 34/126 (26%), Positives = 60/126 (47%)
Query: 85 GCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCA-IRDYAEHKVWQRLNYFWFL 143
GC N D E+++ I+++ GY +N PE ++++ +NTC I E + + LN L
Sbjct: 9 GCTKNQADSEVIMGILESKGYVRSLN-PEESDLLIVNTCGFIAAAIEESIEEILNLV-HL 66
Query: 144 KREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEE 203
K+ G+ KI+V GC+ +R ++ VD+ P +L +LL +
Sbjct: 67 KKP-------GQ-------KILVAGCLVQREGKELAKHLPEVDLFFTPREINNLDKLLAD 112
Query: 204 VDYGQK 209
+ K
Sbjct: 113 LGENNK 118
Score = 37 (18.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 321 VKKMGLR-----FADLLDRLSLEFPEMRFRYT 347
+KKMG + L+RL E P++ R T
Sbjct: 265 LKKMGRKGSSEEIISTLERLRKEIPDITIRTT 296
>UNIPROTKB|Q9KNW0 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
PIR:H82054 RefSeq:NP_232248.1 ProteinModelPortal:Q9KNW0
PRIDE:Q9KNW0 DNASU:2615637 GeneID:2615637 KEGG:vch:VC2620
PATRIC:20084264 Uniprot:Q9KNW0
Length = 470
Score = 193 (73.0 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 342 MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQ 401
+R Y P+P DE++ +M + V Y+ +P Q + VL+ M+R E L+ ++
Sbjct: 258 VRLHYVYPYPH--VDEIIPLMAEG-KVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIK 314
Query: 402 KIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYV 461
K R+I P++ + S FI GF GETEE+ L +K D F YS E A+
Sbjct: 315 KWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANE-IE 373
Query: 462 DDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVE 501
D +PE+VKQ R + +E + ++G+ VL++
Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLID 413
Score = 181 (68.8 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 51/163 (31%), Positives = 84/163 (51%)
Query: 137 LNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRD 196
+N F+ ++++ T K K++V GC+ R +D+I V + GP AY++
Sbjct: 75 VNTCGFIDSAVQESLDTIGEALKENGKVIVTGCLGAR-EDEIRQVHPNVLGITGPHAYQN 133
Query: 197 LPRLLEEV-DYGQKGI-NTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVP 254
+ LE V Y K N SL + V+++ A++ + GCN+ C+FCI+P
Sbjct: 134 V---LEHVHQYAPKPAHNPFTSLVPDHG----VKLTPKHY-AYLKISEGCNHRCTFCIIP 185
Query: 255 FTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYN-DT 296
RG SRPV I+ E + L GVKE+ ++ Q+ ++Y DT
Sbjct: 186 SMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSAYGVDT 228
Score = 98 (39.6 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 30/111 (27%), Positives = 54/111 (48%)
Query: 44 FIAQSSLTASQPLADLAPASEVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNA 103
F + T +A S+ S TG+++ G + + GC N+ D E +L+ ++
Sbjct: 6 FTPNQTTTLETAKKTIAEQSQNSQTTGNKI---GFV---SLGCPKNLVDSERILTQLRTE 59
Query: 104 GYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATG 154
GY E++N +++V+ +NTC D A V + L+ +E K + TG
Sbjct: 60 GY-EIVNSYHDSDVVIVNTCGFIDSA---VQESLDTIGEALKENGKVIVTG 106
Score = 37 (18.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 100 MKNAGYSEVINVPENAEVIFINT 122
+KNAG E++ + ++ ++T
Sbjct: 206 LKNAGVKELLVISQDTSAYGVDT 228
>TIGR_CMR|VC_2620 [details] [associations]
symbol:VC_2620 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
PIR:H82054 RefSeq:NP_232248.1 ProteinModelPortal:Q9KNW0
PRIDE:Q9KNW0 DNASU:2615637 GeneID:2615637 KEGG:vch:VC2620
PATRIC:20084264 Uniprot:Q9KNW0
Length = 470
Score = 193 (73.0 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 342 MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQ 401
+R Y P+P DE++ +M + V Y+ +P Q + VL+ M+R E L+ ++
Sbjct: 258 VRLHYVYPYPH--VDEIIPLMAEG-KVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIK 314
Query: 402 KIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYV 461
K R+I P++ + S FI GF GETEE+ L +K D F YS E A+
Sbjct: 315 KWREICPELVIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANE-IE 373
Query: 462 DDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVE 501
D +PE+VKQ R + +E + ++G+ VL++
Sbjct: 374 DQIPEDVKQDRFERFMLVQQEISAAKLQKRIGSTMQVLID 413
Score = 181 (68.8 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 51/163 (31%), Positives = 84/163 (51%)
Query: 137 LNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRD 196
+N F+ ++++ T K K++V GC+ R +D+I V + GP AY++
Sbjct: 75 VNTCGFIDSAVQESLDTIGEALKENGKVIVTGCLGAR-EDEIRQVHPNVLGITGPHAYQN 133
Query: 197 LPRLLEEV-DYGQKGI-NTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVP 254
+ LE V Y K N SL + V+++ A++ + GCN+ C+FCI+P
Sbjct: 134 V---LEHVHQYAPKPAHNPFTSLVPDHG----VKLTPKHY-AYLKISEGCNHRCTFCIIP 185
Query: 255 FTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYN-DT 296
RG SRPV I+ E + L GVKE+ ++ Q+ ++Y DT
Sbjct: 186 SMRGDLVSRPVGEIIGEAERLKNAGVKELLVISQDTSAYGVDT 228
Score = 98 (39.6 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 30/111 (27%), Positives = 54/111 (48%)
Query: 44 FIAQSSLTASQPLADLAPASEVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNA 103
F + T +A S+ S TG+++ G + + GC N+ D E +L+ ++
Sbjct: 6 FTPNQTTTLETAKKTIAEQSQNSQTTGNKI---GFV---SLGCPKNLVDSERILTQLRTE 59
Query: 104 GYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATG 154
GY E++N +++V+ +NTC D A V + L+ +E K + TG
Sbjct: 60 GY-EIVNSYHDSDVVIVNTCGFIDSA---VQESLDTIGEALKENGKVIVTG 106
Score = 37 (18.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 100 MKNAGYSEVINVPENAEVIFINT 122
+KNAG E++ + ++ ++T
Sbjct: 206 LKNAGVKELLVISQDTSAYGVDT 228
>UNIPROTKB|Q48FA7 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 RefSeq:YP_275930.1 ProteinModelPortal:Q48FA7
STRING:Q48FA7 GeneID:3560255 KEGG:psp:PSPPH_3792 PATRIC:19977023
Uniprot:Q48FA7
Length = 447
Score = 182 (69.1 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 44/135 (32%), Positives = 69/135 (51%)
Query: 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLE 218
K K++V GCM + I D V V GP Y + + +V +K N L+ L
Sbjct: 74 KENGKVIVTGCMGVDA-NVIRDVHPSVLSVTGPQQYEQVVNAVHDVVPPRKDHNPLIDLV 132
Query: 219 ETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE 278
V+++ A++ + GCN+ CSFCI+P RG+ SRPV ++ E L K
Sbjct: 133 PPQG----VKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAKRLVKS 187
Query: 279 GVKEVTLLGQNVNSY 293
GVKE+ ++ Q+ ++Y
Sbjct: 188 GVKELLVISQDTSAY 202
Score = 144 (55.7 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 44/146 (30%), Positives = 67/146 (45%)
Query: 327 RFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386
R +L L +R Y P+P DEL+ +M + Y+ +P Q + +L+
Sbjct: 221 RMTELCQALGSMGVWVRLHYVYPYPH--VDELIPLMA-AGKILPYLDIPFQHASPKILKL 277
Query: 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMF 446
M+R + L ++ R+ PD+ + S FI GF GETEE+ L + D F
Sbjct: 278 MKRPAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 337
Query: 447 AYSMRERTHAHRNYVDDVPEEVKQRR 472
YS E A+ VP++VKQ R
Sbjct: 338 QYSPVEGAPANLLDAAIVPDDVKQDR 363
Score = 80 (33.2 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 85 GCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAE 130
GC + D E +L+ ++ GY EV+ E+A+V+ +NTC D A+
Sbjct: 18 GCPKALVDSERILTQLRMEGY-EVVATYEDADVVVVNTCGFIDTAK 62
>TIGR_CMR|CHY_0419 [details] [associations]
symbol:CHY_0419 "MiaB-like tRNA modifying enzyme"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_359280.1 ProteinModelPortal:Q3AF04 STRING:Q3AF04
GeneID:3727815 KEGG:chy:CHY_0419 PATRIC:21273999 OMA:SEFNERS
BioCyc:CHYD246194:GJCN-420-MONOMER Uniprot:Q3AF04
Length = 434
Score = 307 (113.1 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 76/200 (38%), Positives = 116/200 (58%)
Query: 327 RFADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385
+ ADL+ L + PE+ R R +S P+DF ELL ++ + P C+++HLP Q+G+ +L+
Sbjct: 211 KLADLVAEL-FKIPELKRLRLSSIEPQDFTVELLDVLANSPKFCRHLHLPLQSGDDDILK 269
Query: 386 RMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYM 445
MRR YT YL L++ IR+ IPD+ L+SD I GF GETEE+ +T L+K VG+ ++
Sbjct: 270 AMRRKYTSYEYLRLIETIRERIPDIALTSDVIVGFPGETEEQFLNTYNLVKKVGFMDIHV 329
Query: 446 FAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQ-VGTVQLVLVEGPN 504
F YS R T A + +PE K+RR L+ +E + Y S+ +G + V+ P
Sbjct: 330 FKYSPRAGTPAAK-MPGQIPEREKERRSLLLLN-LKEELFKNYASKFLGKILEVI---PE 384
Query: 505 KKAPDTELVGKSDRGHRVAF 524
++ + G SD RV F
Sbjct: 385 EQDTEGFWEGHSDNYLRVKF 404
Score = 260 (96.6 bits), Expect = 8.6e-20, P = 8.6e-20
Identities = 85/301 (28%), Positives = 149/301 (49%)
Query: 83 TYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142
T GC++N + E + GY E+++ + A++ INTC + ++ K Q +
Sbjct: 8 TLGCKVNQYETEALKGAFLEKGY-EIVDFSDYADIYVINTCTVTHLSDRKSRQMI----- 61
Query: 143 LKREWKKNVATGRSQSKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLL 201
+K V K+P +V +GC A+ ++IL + V++V G L L+
Sbjct: 62 -----RKAV------QKNPRAVVAAVGCYAQVAPEEILKIPE-VNLVLGTVHKNRLVELV 109
Query: 202 EEVDYGQKGINTLLSLEETYA-DISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRE 260
E+V + IN + S EE + P++++ AFV + GCN+ C++CI+P+ RG
Sbjct: 110 EKVLRERTKINAVASFEELLEFEEMPLKLAPGKARAFVKIQEGCNSYCAYCIIPYARGPL 169
Query: 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCK 320
RSRP+E +V EV +L + G E+ L G + +Y G EK+ P ++E F + +
Sbjct: 170 RSRPLEDVVAEVKKLCQSGFSEIVLTGIHTGAY----GQEKQDLPKLADLVAELFK-IPE 224
Query: 321 VKKMGLR------FA-DLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIH 373
+K++ L F +LLD L+ P+ R+ + D++L MR + +Y+
Sbjct: 225 LKRLRLSSIEPQDFTVELLDVLA-NSPKF-CRHLHLPLQSGDDDILKAMRRKYTSYEYLR 282
Query: 374 L 374
L
Sbjct: 283 L 283
>UNIPROTKB|Q607P8 [details] [associations]
symbol:MCA1711 "Putative uncharacterized protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AE017282
GenomeReviews:AE017282_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0009451 TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579
HOGENOM:HOG000224765 OMA:VITFGCR RefSeq:YP_114150.1
ProteinModelPortal:Q607P8 GeneID:3102185 KEGG:mca:MCA1711
PATRIC:22607260 ProtClustDB:CLSK2523614 Uniprot:Q607P8
Length = 436
Score = 214 (80.4 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 54/156 (34%), Positives = 82/156 (52%)
Query: 324 MGLRFADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA 382
+GL D L R L+ E+ R R S P D P + + P ++HLP Q+G+
Sbjct: 197 LGLPL-DALIRSILQETEIPRLRLGSLEPWDLPPGFFDLF-ENPRFMPHLHLPLQSGSDT 254
Query: 383 VLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDM 442
VL+RM R E + L R+ +PD+ +++D I GF GETE E ++L ++ +G+
Sbjct: 255 VLKRMARRCKSEEFARLADHARRQVPDINITTDIIVGFPGETEREWEESLQFIETIGFGD 314
Query: 443 AYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIE 478
++F YS+RE T A VP E+K+ R L E
Sbjct: 315 IHVFTYSVREGTKAAA-MGGHVPAEIKKERSRVLHE 349
Score = 147 (56.8 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 45/146 (30%), Positives = 70/146 (47%)
Query: 155 RSQSKHP-PKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT 213
R+Q P ++V+ GC A D+ A VD+V +A D RL+E + + +
Sbjct: 62 RTQRLSPRARLVLSGCYATLHGDEA--AALGVDLVVS-NA--DKSRLVE-IAARELALEA 115
Query: 214 LLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD 273
+ + + + + AFV V GC C+FCIV RG ERSR +++E+
Sbjct: 116 MPEFSTEPGEAALFALGRQR--AFVKVQDGCRYRCTFCIVTVARGEERSRLPAEVIREIR 173
Query: 274 ELWKEGVKEVTLLGQNVNSYNDTSGM 299
L EGV+EV L G ++ Y G+
Sbjct: 174 RLQAEGVQEVVLTGVHLGGYGSDLGL 199
Score = 69 (29.3 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 28/126 (22%), Positives = 55/126 (43%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
RI ++ GC++N ++E + AG+ +++ +A++I +N+CA+ A K Q +
Sbjct: 2 RINLQSLGCRLNEAELESWAREFQAAGH-RLVSETGDADLIVLNSCAVTAEAVRKSRQMI 60
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDL 197
L + V +G + H + LG L D ++V++ A +
Sbjct: 61 RRTQRLSPR-ARLVLSGCYATLHGDEAAALGV---DLVVSNADKSRLVEIAARELALEAM 116
Query: 198 PRLLEE 203
P E
Sbjct: 117 PEFSTE 122
>UNIPROTKB|Q87Y01 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 RefSeq:NP_793781.1 ProteinModelPortal:Q87Y01
GeneID:1185698 KEGG:pst:PSPTO_4019 PATRIC:19999525
BioCyc:PSYR223283:GJIX-4085-MONOMER Uniprot:Q87Y01
Length = 443
Score = 174 (66.3 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 43/136 (31%), Positives = 70/136 (51%)
Query: 159 KHPPKIVVLGCMAERLKDKILDA-DKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSL 217
K K++V GCM + ++ A V V GP Y + + +V +K N L+ L
Sbjct: 70 KENGKVIVTGCMG--VDASVIRAVHPSVLSVTGPQQYEQVVNAVHDVVPPRKDHNPLIDL 127
Query: 218 EETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWK 277
V+++ A++ + GCN+ CSFCI+P RG+ SRPV ++ E L K
Sbjct: 128 VPPQG----VKLTPRHY-AYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAKRLVK 182
Query: 278 EGVKEVTLLGQNVNSY 293
GVKE+ ++ Q+ ++Y
Sbjct: 183 SGVKELLVISQDTSAY 198
Score = 144 (55.7 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 44/146 (30%), Positives = 67/146 (45%)
Query: 327 RFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386
R +L L +R Y P+P DEL+ +M + Y+ +P Q + +L+
Sbjct: 217 RMTELCQALGSMGVWVRLHYVYPYPH--VDELIPLMA-AGKILPYLDIPFQHASPKILKL 273
Query: 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMF 446
M+R + L ++ R+ PD+ + S FI GF GETEE+ L + D F
Sbjct: 274 MKRPAFEDKTLARIKNWREQCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCF 333
Query: 447 AYSMRERTHAHRNYVDDVPEEVKQRR 472
YS E A+ VP++VKQ R
Sbjct: 334 QYSPVEGAPANLLDAAIVPDDVKQDR 359
Score = 82 (33.9 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAE 130
R+ + GC + D E +L+ ++ GY EV+ E+A+V+ +NTC D A+
Sbjct: 7 RVGMISLGCPKALVDSERILTQLRMEGY-EVVATYEDADVVVVNTCGFIDTAK 58
>UNIPROTKB|Q60CM4 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243233 "Methylococcus capsulatus str. Bath"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AE017282
GenomeReviews:AE017282_GR eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 HOGENOM:HOG000224766 GO:GO:0018339
TIGRFAMs:TIGR01125 KO:K14441 RefSeq:YP_112621.1
ProteinModelPortal:Q60CM4 GeneID:3104493 KEGG:mca:MCA0082
PATRIC:22603887 OMA:RVDTEHM Uniprot:Q60CM4
Length = 437
Score = 186 (70.5 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 52/175 (29%), Positives = 86/175 (49%)
Query: 327 RFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386
RF +L L +R Y P+P DE++ +M + + Y+ +P Q ++ VL+
Sbjct: 213 RFQELARALGDLGVWIRLHYVYPYPH--VDEVIPLMAEG-RLLPYLDIPFQHASARVLKA 269
Query: 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMF 446
M+R E L +++ R++ P++ L S FI GF GETE+E + L ++ D F
Sbjct: 270 MKRPAATENILAAIRRWREVCPELTLRSTFIVGFPGETEDEFRELLDFLEEARLDRVGCF 329
Query: 447 AYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVE 501
YS + A+ D VP EVK R L+E + +++G + VLV+
Sbjct: 330 EYSPVKGAAANA-LPDPVPAEVKAERHARLMEVQERISAARLRTRIGRTETVLVD 383
Score = 171 (65.3 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 43/139 (30%), Positives = 71/139 (51%)
Query: 163 KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYA 222
K++V GC+ ER ++I V V G AY ++ + E L L + +
Sbjct: 72 KVIVTGCLGER-PEEIQARHPAVLKVTGAHAYEEVMNAVHE---------HLPPLHDPFM 121
Query: 223 DISP---VRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEG 279
D+ P VR++ A++ + GCN+ CSFCI+P RG SRP+ ++ E + L G
Sbjct: 122 DLVPPQGVRLTPRHY-AYLKISEGCNHRCSFCIIPALRGDLVSRPIGEVMTEAERLVAAG 180
Query: 280 VKEVTLLGQNVNSYNDTSG 298
VKE+ ++ Q+ ++Y G
Sbjct: 181 VKEILVVSQDTSAYGADLG 199
Score = 74 (31.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 32/128 (25%), Positives = 58/128 (45%)
Query: 85 GCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLK 144
GC + D E +++ ++ GY+ ++ ++A+++ +NTC D A V + L
Sbjct: 12 GCPKALVDSERIITQLRAEGYA-IVPTYQDADLVVVNTCGFIDAA---VEESLEAIGEAV 67
Query: 145 REWKKNVATG-------RSQSKHPPKIVVLGCMA-ERLKDKILDA-----DKMVDVVCGP 191
E K + TG Q++HP + V G A E + + + + D +D+V P
Sbjct: 68 AENGKVIVTGCLGERPEEIQARHPAVLKVTGAHAYEEVMNAVHEHLPPLHDPFMDLV-PP 126
Query: 192 DAYRDLPR 199
R PR
Sbjct: 127 QGVRLTPR 134
>UNIPROTKB|Q2GHP3 [details] [associations]
symbol:ECH_0217 "tRNA modification enzyme, MiaB family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_507040.1 ProteinModelPortal:Q2GHP3
STRING:Q2GHP3 GeneID:3927804 KEGG:ech:ECH_0217 PATRIC:20575969
ProtClustDB:CLSK749189 BioCyc:ECHA205920:GJNR-217-MONOMER
Uniprot:Q2GHP3
Length = 412
Score = 231 (86.4 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 56/172 (32%), Positives = 94/172 (54%)
Query: 331 LLDRLSLEFPEMR-FRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389
++ R+ P++R R +S + D+L+ I+ + P ++HL Q+GN+ +L+RM+R
Sbjct: 199 MIKRVLSAVPQLRRLRLSSIDVAEIEDDLINIIINEPRFMPHLHLSLQSGNNLILKRMKR 258
Query: 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449
++RE ++ KI +V +D I GF ETEE DT+ L++ ++F YS
Sbjct: 259 RHSREQVIEFCNKITSKRKEVVFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYS 318
Query: 450 MRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVE 501
RE T A R + V +EVK+RR+ L+E + Y + + T Q V+VE
Sbjct: 319 KREGTPAAR--MPQVVQEVKKRRVKHLLEFAEKRLHDFYSTLLHTKQSVVVE 368
Score = 114 (45.2 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 31/131 (23%), Positives = 58/131 (44%)
Query: 163 KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYA 222
KI+V GC + + ++ ++ V+ D + L ++ K N+ +E
Sbjct: 62 KIIVAGCAVQLNPELYVNMPGVIKVLGNQDKLKYESYLAKDKIIVSKIENS----KEVVQ 117
Query: 223 DISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKE 282
D V+ A + + GCN+ C+FC++ RG RS +E I+ +V G E
Sbjct: 118 D--SVKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIEDIITKVKACVDNGYNE 175
Query: 283 VTLLGQNVNSY 293
V G +++ +
Sbjct: 176 VVFTGVDISDF 186
Score = 67 (28.6 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 29/111 (26%), Positives = 55/111 (49%)
Query: 83 TYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142
T+GC++N + E++ + +K A +VI +++CA+ + AE +V R+ +
Sbjct: 6 TFGCRLNFYESEVIKNNLKKAQLDDVI---------VVHSCAVTNEAERQVRSRIRKLYR 56
Query: 143 LKREWKKNVATGRSQSKHP------PKIV-VLGCMAERLK-DKILDADKMV 185
K VA G + +P P ++ VLG ++LK + L DK++
Sbjct: 57 DNANVKIIVA-GCAVQLNPELYVNMPGVIKVLGNQ-DKLKYESYLAKDKII 105
>TIGR_CMR|ECH_0217 [details] [associations]
symbol:ECH_0217 "tRNA modification enzyme, MiaB family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_507040.1 ProteinModelPortal:Q2GHP3
STRING:Q2GHP3 GeneID:3927804 KEGG:ech:ECH_0217 PATRIC:20575969
ProtClustDB:CLSK749189 BioCyc:ECHA205920:GJNR-217-MONOMER
Uniprot:Q2GHP3
Length = 412
Score = 231 (86.4 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 56/172 (32%), Positives = 94/172 (54%)
Query: 331 LLDRLSLEFPEMR-FRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389
++ R+ P++R R +S + D+L+ I+ + P ++HL Q+GN+ +L+RM+R
Sbjct: 199 MIKRVLSAVPQLRRLRLSSIDVAEIEDDLINIIINEPRFMPHLHLSLQSGNNLILKRMKR 258
Query: 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449
++RE ++ KI +V +D I GF ETEE DT+ L++ ++F YS
Sbjct: 259 RHSREQVIEFCNKITSKRKEVVFGADIIVGFPTETEEMFNDTVRLIEEANISYLHVFPYS 318
Query: 450 MRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVE 501
RE T A R + V +EVK+RR+ L+E + Y + + T Q V+VE
Sbjct: 319 KREGTPAAR--MPQVVQEVKKRRVKHLLEFAEKRLHDFYSTLLHTKQSVVVE 368
Score = 114 (45.2 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 31/131 (23%), Positives = 58/131 (44%)
Query: 163 KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYA 222
KI+V GC + + ++ ++ V+ D + L ++ K N+ +E
Sbjct: 62 KIIVAGCAVQLNPELYVNMPGVIKVLGNQDKLKYESYLAKDKIIVSKIENS----KEVVQ 117
Query: 223 DISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKE 282
D V+ A + + GCN+ C+FC++ RG RS +E I+ +V G E
Sbjct: 118 D--SVKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIEDIITKVKACVDNGYNE 175
Query: 283 VTLLGQNVNSY 293
V G +++ +
Sbjct: 176 VVFTGVDISDF 186
Score = 67 (28.6 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 29/111 (26%), Positives = 55/111 (49%)
Query: 83 TYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142
T+GC++N + E++ + +K A +VI +++CA+ + AE +V R+ +
Sbjct: 6 TFGCRLNFYESEVIKNNLKKAQLDDVI---------VVHSCAVTNEAERQVRSRIRKLYR 56
Query: 143 LKREWKKNVATGRSQSKHP------PKIV-VLGCMAERLK-DKILDADKMV 185
K VA G + +P P ++ VLG ++LK + L DK++
Sbjct: 57 DNANVKIIVA-GCAVQLNPELYVNMPGVIKVLGNQ-DKLKYESYLAKDKII 105
>UNIPROTKB|E1BRH0 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:TLKGHSV
Pfam:PF01938 EMBL:AADN02027453 EMBL:AADN02027454 EMBL:AADN02027455
EMBL:AADN02027456 EMBL:AADN02027457 EMBL:AADN02027458
EMBL:AADN02027459 EMBL:AADN02027460 EMBL:AADN02027461
EMBL:AADN02027462 EMBL:AADN02027463 EMBL:AADN02027464
EMBL:AADN02027465 EMBL:AADN02027466 EMBL:AADN02027467
EMBL:AADN02027468 EMBL:AADN02027469 EMBL:AADN02027470
EMBL:AADN02027471 IPI:IPI00574581 ProteinModelPortal:E1BRH0
Ensembl:ENSGALT00000020688 ArrayExpress:E1BRH0 Uniprot:E1BRH0
Length = 568
Score = 194 (73.4 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 52/183 (28%), Positives = 97/183 (53%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G LL +L PE +R T+P + + +E+ I+ + P V ++H+P Q
Sbjct: 263 RDIGTDLPTLLWKLVEAIPEGAMLRLGMTNPPYILEHLEEMAKIL-NHPRVYAFLHIPVQ 321
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+ + +VL M+R Y + +V +++ +P + +++D ICGF GET+E+ +T+ L++
Sbjct: 322 SASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDIICGFPGETDEDFQETMKLVEQ 381
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
+ ++ + R T A + + VP VK++R +L + F YD +VG Q
Sbjct: 382 YKFPSLFINQFYPRPGTPAAKMH--QVPAAVKKQRTKDLSQLFHSYNP--YDHKVGERQR 437
Query: 498 VLV 500
VLV
Sbjct: 438 VLV 440
Score = 125 (49.1 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 40/158 (25%), Positives = 74/158 (46%)
Query: 163 KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT-LLSLEETY 221
K+V+ GC+ + + D K + ++ + + R++E V+ KG + LL ++
Sbjct: 130 KVVLAGCVPQAQPRQ--DYLKGLSII----GVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183
Query: 222 ------ADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDEL 275
A + +I KN + +S+ GC N C++C RG S P+E +V +
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQS 243
Query: 276 WKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313
++EGV E+ L ++ +Y G + P W+L E
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDL---PTLLWKLVE 278
Score = 70 (29.7 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAE 130
+I+ T+GC N +D E + + GY N E A++ +N+C +++ AE
Sbjct: 63 KIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAE-ADLWLLNSCTVKNPAE 114
>TIGR_CMR|DET_0962 [details] [associations]
symbol:DET_0962 "tRNA modification enzyme, MiaB family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 Pfam:PF00919 Pfam:PF04055
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_181685.1 ProteinModelPortal:Q3Z7W4 STRING:Q3Z7W4
GeneID:3229703 KEGG:det:DET0962 PATRIC:21608973 OMA:ERINTKA
ProtClustDB:CLSK837155 BioCyc:DETH243164:GJNF-963-MONOMER
Uniprot:Q3Z7W4
Length = 413
Score = 188 (71.2 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 49/167 (29%), Positives = 83/167 (49%)
Query: 325 GLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVL 384
G+ A L++ + R R +S P + LL + + P +C++ H+ Q+G+ +L
Sbjct: 190 GVDLAGLIEAILANTQIPRLRLSSLQPGEITPRLLALW-ENPRLCRHFHMALQSGSDCIL 248
Query: 385 ERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAY 444
MRR Y+ Y ++ IR +P +++D I GF GETEE+ A +L ++ G+ +
Sbjct: 249 ALMRRPYSLGDYNRALEAIRSQVPGAAVTTDLIVGFPGETEEDFALSLKYIQQAGFARVH 308
Query: 445 MFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQ 491
F YS R T A + V ++RL+ L+ A +S Y Q
Sbjct: 309 AFPYSERLGTLAS-GMEGKIDPSVIKKRLS-LVMAAAKSVSMQYRRQ 353
Score = 144 (55.7 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 42/141 (29%), Positives = 66/141 (46%)
Query: 155 RSQSKHPPK--IVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGIN 212
R +H P I ++GC A+ DK+ C PDA DL +L+ + GI
Sbjct: 62 RIARRHNPAGFICLMGCYAQNGGDKLS---------C-PDA--DL--ILDNCR--KSGIA 105
Query: 213 TLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEV 272
+S ++P +F+ + GC+N CS+CIVPF R + R V+ I+ E+
Sbjct: 106 AEISRLFPPEALAPSLYENGRTRSFIKIQDGCDNFCSYCIVPFVRRHKSCRRVDEIISEI 165
Query: 273 DELWKEGVKEVTLLGQNVNSY 293
+ EG +E+ L G + Y
Sbjct: 166 NLRQAEGYQEIVLTGTEIGEY 186
Score = 70 (29.7 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 27/107 (25%), Positives = 51/107 (47%)
Query: 82 ETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFW 141
+T GC++N + E AGY +++ +N ++ +N+C + A+ K ++
Sbjct: 7 DTLGCKLNQAETEAFGREFARAGY-RLVSPQDNWDIYILNSCTVTHVADRKARYQIR--- 62
Query: 142 FLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKIL--DADKMVD 186
+ R + N A G I ++GC A+ DK+ DAD ++D
Sbjct: 63 -IAR--RHNPA-GF--------ICLMGCYAQNGGDKLSCPDADLILD 97
>FB|FBgn0034214 [details] [associations]
symbol:CG6550 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0016740
"transferase activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE013599 GO:GO:0016021 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089
EMBL:AY051634 RefSeq:NP_611207.1 UniGene:Dm.4535
ProteinModelPortal:Q7K4W1 SMR:Q7K4W1 STRING:Q7K4W1 PaxDb:Q7K4W1
PRIDE:Q7K4W1 EnsemblMetazoa:FBtr0086961 GeneID:36954
KEGG:dme:Dmel_CG6550 UCSC:CG6550-RA FlyBase:FBgn0034214
InParanoid:Q7K4W1 OMA:TLKGHSV OrthoDB:EOG4W3R39 PhylomeDB:Q7K4W1
GenomeRNAi:36954 NextBio:801207 Bgee:Q7K4W1 Pfam:PF01938
Uniprot:Q7K4W1
Length = 552
Score = 197 (74.4 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 51/183 (27%), Positives = 98/183 (53%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G +LL +L PE +R T+P + + +E+ +++ P V ++H+P Q
Sbjct: 272 RDIGSSLPELLWQLVEVIPEHCMLRVGMTNPPYILEHLEEVANVLQ-HPRVYSFLHVPVQ 330
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+G+ +VL M+R Y R+ + +V +R+ +P V +++D ICGF ETE++ +T+TL
Sbjct: 331 SGSDSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAK 390
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
+ ++ + R T A + +D +P + ++R L + F + Y +VG +
Sbjct: 391 YRFPSLFINQFFPRPGTPAAK--MDRIPANLVKKRTKRLTDLFYSY--EPYADRVGEIYT 446
Query: 498 VLV 500
VLV
Sbjct: 447 VLV 449
Score = 137 (53.3 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 50/229 (21%), Positives = 99/229 (43%)
Query: 103 AGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPP 162
A Y ++ E A++ +N+C +++ +E ++ + +G KH
Sbjct: 95 AAYGYRLSGKEEADLWLLNSCTVKNPSEDT--------------FRNEIESGMRNGKH-- 138
Query: 163 KIVVLGCMAERL-KDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKG--INTLLSLEE 219
+VV GC+ + K L+ ++ V + + R++E V+ KG + L + ++
Sbjct: 139 -VVVAGCVPQGAPKSDYLNGLSVIGV-------QQIDRVVEVVEETLKGHSVQLLQNKKK 190
Query: 220 TY------ADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD 273
+ A +S ++ KN + +S+ GC N C++C RG S P E +V+
Sbjct: 191 VHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERAR 250
Query: 274 ELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVK 322
+ + EG E+ L ++ +Y G P W+L E C ++
Sbjct: 251 QSFAEGCCEIWLTSEDTGAYGRDIGSSL---PELLWQLVEVIPEHCMLR 296
Score = 69 (29.3 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAE 130
+++ +T+GC N +D E + + GY ++ E A++ +N+C +++ +E
Sbjct: 72 KVFVKTWGCAHNNSDSEYMAGQLAAYGYR--LSGKEEADLWLLNSCTVKNPSE 122
>UNIPROTKB|Q291H5 [details] [associations]
symbol:GA19679 "Threonylcarbamoyladenosine tRNA
methylthiotransferase" species:46245 "Drosophila pseudoobscura
pseudoobscura" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016021 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 EMBL:CM000071
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089
OMA:TLKGHSV OrthoDB:EOG4W3R39 Pfam:PF01938 RefSeq:XP_001360562.1
ProteinModelPortal:Q291H5 GeneID:4803921 KEGG:dpo:Dpse_GA19679
FlyBase:FBgn0079675 InParanoid:Q291H5 Uniprot:Q291H5
Length = 553
Score = 192 (72.6 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 51/183 (27%), Positives = 98/183 (53%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G +LL +L PE +R T+P + + +E+ +++ P V ++H+P Q
Sbjct: 272 RDIGSSLPELLWKLVEVIPEHCMLRVGMTNPPYILEHLEEVAKVLQ-HPRVYAFLHVPVQ 330
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+G+ +VL M+R Y R+ + +V +R+ +P V +++D ICGF ETEE+ +T+TL
Sbjct: 331 SGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCGR 390
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
+ ++ + R T A + ++ +P + ++R L + F + Y +VG +
Sbjct: 391 YRFPSLFINQFFPRPGTPAAK--MERIPANLVKKRTKRLTDLFYSY--EPYAQRVGEMYT 446
Query: 498 VLV 500
VLV
Sbjct: 447 VLV 449
Score = 140 (54.3 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 52/227 (22%), Positives = 98/227 (43%)
Query: 103 AGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPP 162
A Y ++ + A++ +N+C +++ +E ++ + +G S KH
Sbjct: 96 AAYGYKLSGKDEADLWLLNSCTVKNPSEDT--------------FRNEIESGMSNGKH-- 139
Query: 163 KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT-LLSLEETY 221
IVV GC+ + D + + V+ + + R++E V+ KG + LL ++ +
Sbjct: 140 -IVVAGCVPQGAPKS--DYLRGLSVI----GVQQIDRVVEVVEETLKGHSVRLLQNKKVH 192
Query: 222 ------ADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDEL 275
A +S ++ KN + +S+ GC N C++C RG S P E IV +
Sbjct: 193 GRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIVDRARQS 252
Query: 276 WKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVK 322
+ EG E+ L ++ +Y G P W+L E C ++
Sbjct: 253 FAEGCCEIWLTSEDTGAYGRDIGSSL---PELLWKLVEVIPEHCMLR 296
Score = 67 (28.6 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAE 130
+++ +T+GC N +D E + + GY ++ + A++ +N+C +++ +E
Sbjct: 73 KVFVKTWGCAHNNSDSEYMAGQLAAYGYK--LSGKDEADLWLLNSCTVKNPSE 123
>UNIPROTKB|E2RAI1 [details] [associations]
symbol:CDKAL1 "CDK5 regulatory subunit-associated protein
1-like 1" species:9615 "Canis lupus familiaris" [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:AAEX03017586
EMBL:AAEX03017587 EMBL:AB720723 RefSeq:XP_849433.1
Ensembl:ENSCAFT00000016240 GeneID:488240 KEGG:cfa:488240
Uniprot:E2RAI1
Length = 578
Score = 191 (72.3 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 51/183 (27%), Positives = 96/183 (52%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G LL +L PE +R T+P + + +E+ I+ + P V ++H+P Q
Sbjct: 264 RDIGTNLPALLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL-NHPRVYAFLHIPVQ 322
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+ + VL M+R Y + +V +++ +P + L++D ICGF GET+++ +T+ L++
Sbjct: 323 SASDTVLMEMKREYCVADFKRVVDFLKEKVPGITLATDIICGFPGETDQDFQETVKLVED 382
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
+ ++ + R T A + + VP +VK++R +L F YD ++G Q
Sbjct: 383 YKFPSLFINQFYPRPGTPAAK--MVQVPAQVKKQRTKDLSRVFHSYNP--YDHKIGERQQ 438
Query: 498 VLV 500
VLV
Sbjct: 439 VLV 441
Score = 136 (52.9 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 51/219 (23%), Positives = 100/219 (45%)
Query: 103 AGYS-EVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHP 161
A Y E+ A++ +N+C +++ AE ++F + ++ + ++K
Sbjct: 87 AAYGYEITENASEADLWLLNSCTVKNPAE-------DHF-------RNSIKKAQEENK-- 130
Query: 162 PKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT-LLSLEET 220
KIV+ GC+ + + D K + ++ + + R++E V+ KG + LL ++
Sbjct: 131 -KIVLAGCVPQAQPRQ--DYFKGLSII----GVQQIDRVVEVVEETIKGHSVRLLGQKKA 183
Query: 221 Y------ADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDE 274
A + +I KN + +SV GC N C++C RG S P++ +V+ +
Sbjct: 184 NGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLASYPIDELVERAKQ 243
Query: 275 LWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313
++EGV E+ L ++ +Y G P W+L E
Sbjct: 244 SFQEGVCEIWLTSEDTGAYGRDIGTNL---PALLWKLVE 279
Score = 78 (32.5 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 64 EVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTC 123
E S + S + +I+ T+GC N +D E + + GY N E A++ +N+C
Sbjct: 50 ENSPPSDSTIPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASE-ADLWLLNSC 108
Query: 124 AIRDYAE 130
+++ AE
Sbjct: 109 TVKNPAE 115
>TIGR_CMR|SPO_0277 [details] [associations]
symbol:SPO_0277 "MiaB-like tRNA modifying enzyme"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_165541.1 ProteinModelPortal:Q5LX67
GeneID:3196395 KEGG:sil:SPO0277 PATRIC:23373805
ProtClustDB:CLSK933203 Uniprot:Q5LX67
Length = 418
Score = 168 (64.2 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 46/179 (25%), Positives = 85/179 (47%)
Query: 327 RFADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385
+ DL+ R+ P++ R R +S + + L+ + P + ++HL Q G+ +L+
Sbjct: 205 KLGDLVMRILRLVPDLPRLRISSIDSIEVDENLMQGIATEPRLMPHLHLSLQHGDDLILK 264
Query: 386 RMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYM 445
RM+R + R+ + ++ R++ P++ +D I GF ETE ++L L+ ++
Sbjct: 265 RMKRRHLRDDAIRFAEEARRLRPEMTFGADIIAGFPTETEAHFENSLKLVDDCHLTWLHV 324
Query: 446 FAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPN 504
F YS RE T A + V ++ + R L A QVG +L+E P+
Sbjct: 325 FPYSRREGTPAAK-IPSQVNGKIIKERAARLRAAGDRRVALHLAEQVGRSHRILMESPH 382
Score = 155 (59.6 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 53/188 (28%), Positives = 91/188 (48%)
Query: 113 ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAE 172
+NA + +NTCA+ A K Q + L+RE N T R ++V GC A+
Sbjct: 31 DNA--VIVNTCAVTAEAVRKARQEIRR---LRRE---N-PTAR--------LIVTGCAAQ 73
Query: 173 RLKDKILDADKMVDVVCG------PDAYRDLPR-LLEEVDYGQKGINTLLSLEETYADIS 225
+ + A VD V G P+ ++ + + E + Q ++ ++S+ ET +
Sbjct: 74 T-EPETFTAMAEVDAVIGNTEKMRPETWKSMTADFIGETEAVQ--VDDIMSVTETAGHLI 130
Query: 226 PVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTL 285
+++ A+V V GC++ C+FCI+P+ RG RS P +V ++ L G EV L
Sbjct: 131 DGFGTRSR--AYVQVQNGCDHRCTFCIIPYGRGNSRSVPAGVVVDQIKRLVDRGYNEVVL 188
Query: 286 LGQNVNSY 293
G ++ S+
Sbjct: 189 TGVDLTSW 196
Score = 61 (26.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 83 TYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142
T GC++N + E + + AG +NA + +NTCA+ A K Q +
Sbjct: 8 TLGCRLNAYETEAMKELSAQAGL-------DNA--VIVNTCAVTAEAVRKARQEIRR--- 55
Query: 143 LKRE--WKKNVATGRSQSKHP 161
L+RE + + TG + P
Sbjct: 56 LRRENPTARLIVTGCAAQTEP 76
>UNIPROTKB|Q5VV42 [details] [associations]
symbol:CDKAL1 "Threonylcarbamoyladenosine tRNA
methylthiotransferase" species:9606 "Homo sapiens" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016021 GO:GO:0005789
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 MIM:125853
EMBL:CH471087 eggNOG:COG0621 HOGENOM:HOG000224768 Gene3D:3.80.30.20
InterPro:IPR006466 InterPro:IPR023404 InterPro:IPR002792
TIGRFAMs:TIGR01578 PROSITE:PS50926 CTD:54901 HOVERGEN:HBG097712
KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:AK000349 EMBL:AK128546 EMBL:AK291735 EMBL:AL513188
EMBL:AL022717 EMBL:AL033521 EMBL:AL035090 EMBL:AL451080
EMBL:AL512405 EMBL:AL513015 EMBL:AL513549 EMBL:BC064145
EMBL:BC121020 EMBL:BC121021 IPI:IPI00015713 IPI:IPI00443485
IPI:IPI00855838 RefSeq:NP_060244.2 UniGene:Hs.657604
ProteinModelPortal:Q5VV42 SMR:Q5VV42 STRING:Q5VV42
PhosphoSite:Q5VV42 DMDM:74747199 PaxDb:Q5VV42 PeptideAtlas:Q5VV42
PRIDE:Q5VV42 Ensembl:ENST00000274695 Ensembl:ENST00000378610
Ensembl:ENST00000378624 GeneID:54901 KEGG:hsa:54901 UCSC:uc003ndb.1
UCSC:uc003ndd.2 UCSC:uc003nde.2 GeneCards:GC06P020534
HGNC:HGNC:21050 HPA:HPA014374 MIM:611259 neXtProt:NX_Q5VV42
PharmGKB:PA134871999 InParanoid:Q5VV42 OMA:CPDITLR
OrthoDB:EOG4RJG1D PhylomeDB:Q5VV42 ChiTaRS:CDKAL1 GenomeRNAi:54901
NextBio:57928 Bgee:Q5VV42 CleanEx:HS_CDKAL1 Genevestigator:Q5VV42
Uniprot:Q5VV42
Length = 579
Score = 198 (74.8 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 50/183 (27%), Positives = 99/183 (54%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G LL +L PE +R T+P + + +E+ I+ + P V ++H+P Q
Sbjct: 265 RDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL-NHPRVYAFLHIPVQ 323
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+ + +VL M+R Y + +V +++ +P + +++D ICGF GET+++ +T+ L++
Sbjct: 324 SASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEE 383
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
+ ++ + R T A + ++ VP +VK++R +L F + YD ++G Q
Sbjct: 384 YKFPSLFINQFYPRPGTPAAK--MEQVPAQVKKQRTKDLSRVFHSYSP--YDHKIGERQQ 439
Query: 498 VLV 500
VLV
Sbjct: 440 VLV 442
Score = 126 (49.4 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 52/212 (24%), Positives = 90/212 (42%)
Query: 103 AGYS-EVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHP 161
A Y ++ +A++ +N+C +++ AE + + E KK V G P
Sbjct: 88 AAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK---AQEENKKIVLAGCVPQAQP 144
Query: 162 PKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETY 221
+ + G ++ D++V+VV + RLL GQK N L
Sbjct: 145 RQDYLKGLSIIGVQQ----IDRVVEVVEETIKGHSV-RLL-----GQKKDNGR-RLGGAR 193
Query: 222 ADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVK 281
D+ +R KN + +S+ GC N C++C RG S P++ +V + ++EGV
Sbjct: 194 LDLPKIR--KNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVC 251
Query: 282 EVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313
E+ L ++ +Y G P W+L E
Sbjct: 252 EIWLTSEDTGAYGRDIGTNL---PTLLWKLVE 280
Score = 72 (30.4 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 64 EVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTC 123
E S + S + +I+ T+GC N +D E + + GY N + A++ +N+C
Sbjct: 51 ENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASD-ADLWLLNSC 109
Query: 124 AIRDYAE 130
+++ AE
Sbjct: 110 TVKNPAE 116
>UNIPROTKB|F1MAW5 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:DAAA02055585
EMBL:DAAA02055586 EMBL:DAAA02055587 EMBL:DAAA02055588
IPI:IPI00826239 RefSeq:NP_001179620.1 UniGene:Bt.68904
ProteinModelPortal:F1MAW5 Ensembl:ENSBTAT00000017811 GeneID:530159
KEGG:bta:530159 NextBio:20875192 Uniprot:F1MAW5
Length = 578
Score = 192 (72.6 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 51/183 (27%), Positives = 95/183 (51%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G LL +L PE +R T+P + + +E+ I+ P V ++H+P Q
Sbjct: 264 RDIGSSLPALLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILH-HPRVYAFLHIPVQ 322
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+ + VL M+R Y + +V ++ +P + +++D ICGF GET+++ +T+ L++
Sbjct: 323 SASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEE 382
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
+ ++ + R T A + ++ VP +VK++R EL F YD ++G Q
Sbjct: 383 YKFPSLFINQFYPRPGTPAAK--MEQVPAQVKKQRTKELSRIFHSYNP--YDHKIGQRQQ 438
Query: 498 VLV 500
VLV
Sbjct: 439 VLV 441
Score = 128 (50.1 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 52/212 (24%), Positives = 90/212 (42%)
Query: 103 AGYS-EVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHP 161
A Y ++ +A++ +N+C +++ AE + + E KK V G P
Sbjct: 87 AAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK---AQEENKKIVLAGCVPQAQP 143
Query: 162 PKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETY 221
+ + G ++ D++V+VV + RLL GQK N L
Sbjct: 144 RQDYLKGLSIIGVQQ----IDRVVEVVEETIKGHSV-RLL-----GQKKDNGK-RLGGAR 192
Query: 222 ADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVK 281
D+ +R KN + +S+ GC N C++C RG S P++ +V + ++EGV
Sbjct: 193 LDLPKIR--KNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVC 250
Query: 282 EVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313
E+ L ++ +Y G P W+L E
Sbjct: 251 EIWLTSEDTGAYGRDIGSSL---PALLWKLVE 279
Score = 73 (30.8 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 47/233 (20%), Positives = 96/233 (41%)
Query: 64 EVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTC 123
E S + S + +I+ T+GC N +D E + + GY N + A++ +N+C
Sbjct: 50 ENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASD-ADLWLLNSC 108
Query: 124 AIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADK 183
+++ AE + + E KK V G P + + G ++ D+
Sbjct: 109 TVKNPAEDHFRNSIKK---AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQ----IDR 161
Query: 184 MVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYAD--ISPVRISKNSVTA--FVS 239
+V+VV + L ++ D G++ L L + + I + I+ + A +
Sbjct: 162 VVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCK 221
Query: 240 VMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNS 292
N+ S+ P +R++ +S + V E+W ++ G+++ S
Sbjct: 222 TKHARGNLASY---PIDELVDRAK--QSFQEGVCEIWLTS-EDTGAYGRDIGS 268
>MGI|MGI:1921765 [details] [associations]
symbol:Cdkal1 "CDK5 regulatory subunit associated protein
1-like 1" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 MGI:MGI:1921765 GO:GO:0016021
GO:GO:0005789 GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0008033 eggNOG:COG0621 GeneTree:ENSGT00530000063447
HOGENOM:HOG000224768 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 HOVERGEN:HBG097712 KO:K15865
GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938
OrthoDB:EOG4RJG1D EMBL:AK004490 EMBL:AK041864 EMBL:AK045506
EMBL:AK082629 EMBL:AK169761 EMBL:AL513025 EMBL:AL512647
EMBL:AL589701 EMBL:AL645587 EMBL:BC016073 IPI:IPI00163015
IPI:IPI00515329 IPI:IPI00648337 IPI:IPI00857573 IPI:IPI00857859
RefSeq:NP_653119.1 UniGene:Mm.212227 ProteinModelPortal:Q91WE6
STRING:Q91WE6 PhosphoSite:Q91WE6 PRIDE:Q91WE6 DNASU:68916
Ensembl:ENSMUST00000006353 Ensembl:ENSMUST00000091674
Ensembl:ENSMUST00000137225 Ensembl:ENSMUST00000140278 GeneID:68916
KEGG:mmu:68916 UCSC:uc007pyn.1 UCSC:uc007pyo.1 UCSC:uc007pyp.1
InParanoid:Q91WE6 NextBio:328171 Bgee:Q91WE6 Genevestigator:Q91WE6
Uniprot:Q91WE6
Length = 578
Score = 190 (71.9 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 50/183 (27%), Positives = 96/183 (52%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G LL +L PE +R T+P + + +E+ I+ + P V ++H+P Q
Sbjct: 264 RDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL-NHPRVYAFLHIPVQ 322
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+ + +VL M+R Y + +V +++ +P + +++D ICGF GET+++ +T+ L++
Sbjct: 323 SASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEE 382
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
+ ++ + R T A + + VP VK++R +L F YD ++G Q
Sbjct: 383 YKFPSLFINQFYPRPGTPAAK--AEQVPAHVKKQRTKDLSRVFHSYNP--YDHKIGERQQ 438
Query: 498 VLV 500
VLV
Sbjct: 439 VLV 441
Score = 130 (50.8 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 52/212 (24%), Positives = 92/212 (43%)
Query: 103 AGYS-EVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHP 161
A Y ++ +A++ +N+C +++ AE + + E KK V G P
Sbjct: 87 AAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK---AQEENKKVVLAGCVPQAQP 143
Query: 162 PKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETY 221
+ + G ++ D++V+VV + RLL GQK N L
Sbjct: 144 RQDYLKGLSIIGVQQ----IDRVVEVVEETIKGHSV-RLL-----GQKKDNGK-RLGGAR 192
Query: 222 ADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVK 281
D+ +R KN + +S+ GC N C++C RG S P++ +V+ + ++EGV
Sbjct: 193 LDLPKIR--KNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQSFQEGVC 250
Query: 282 EVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313
E+ L ++ +Y G + P W+L E
Sbjct: 251 EIWLTSEDTGAYGRDIGTDL---PTLLWKLVE 279
Score = 71 (30.1 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 43/203 (21%), Positives = 84/203 (41%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
+I+ T+GC N +D E + + GY N + A++ +N+C +++ AE +
Sbjct: 64 KIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASD-ADLWLLNSCTVKNPAEDHFRNSI 122
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDL 197
+ E KK V G P + + G ++ D++V+VV +
Sbjct: 123 KK---AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQ----IDRVVEVVEETIKGHSV 175
Query: 198 PRLLEEVDYGQKGINTLLSLEETYAD--ISPVRISKNSVTA--FVSVMRGCNNMCSFCIV 253
L ++ D G++ L L + + I + I+ + A + N+ S+
Sbjct: 176 RLLGQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASY--- 232
Query: 254 PFTRGRERSRPVESIVKEVDELW 276
P ER++ +S + V E+W
Sbjct: 233 PIDELVERAK--QSFQEGVCEIW 253
>UNIPROTKB|F1RUG0 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:CT841541
EMBL:CT842529 EMBL:CT954244 EMBL:CT956009 EMBL:CU326401
RefSeq:XP_003128247.3 UniGene:Ssc.32559 ProteinModelPortal:F1RUG0
Ensembl:ENSSSCT00000001175 GeneID:100512355 KEGG:ssc:100512355
Uniprot:F1RUG0
Length = 578
Score = 190 (71.9 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 50/183 (27%), Positives = 96/183 (52%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G LL +L PE +R T+P + + +E+ I+ + P V ++H+P Q
Sbjct: 264 RDIGTSLPALLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL-NHPRVYAFLHIPVQ 322
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+ + VL M+R Y + +V ++ +P + +++D ICGF GET+++ +T+ L++
Sbjct: 323 SASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEE 382
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
+ ++ + R T A + ++ VP +VK++R +L F YD ++G Q
Sbjct: 383 YKFPSLFINQFYPRPGTPAAK--MEQVPAQVKKQRTKDLSRVFHSYNP--YDHKIGERQQ 438
Query: 498 VLV 500
VLV
Sbjct: 439 VLV 441
Score = 128 (50.1 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 52/212 (24%), Positives = 90/212 (42%)
Query: 103 AGYS-EVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHP 161
A Y ++ +A++ +N+C +++ AE + + E KK V G P
Sbjct: 87 AAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK---AQEENKKIVLAGCVPQAQP 143
Query: 162 PKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETY 221
+ + G ++ D++V+VV + RLL GQK N L
Sbjct: 144 RQDYLKGLSIIGVQQ----IDRVVEVVEETIKGHSV-RLL-----GQKKDNGK-RLGGAR 192
Query: 222 ADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVK 281
D+ +R KN + +S+ GC N C++C RG S P++ +V + ++EGV
Sbjct: 193 LDLPKIR--KNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVC 250
Query: 282 EVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313
E+ L ++ +Y G P W+L E
Sbjct: 251 EIWLTSEDTGAYGRDIGTSL---PALLWKLVE 279
Score = 72 (30.4 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 64 EVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTC 123
E S + S + +I+ T+GC N +D E + + GY N + A++ +N+C
Sbjct: 50 ENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASD-ADLWLLNSC 108
Query: 124 AIRDYAE 130
+++ AE
Sbjct: 109 TVKNPAE 115
>TIGR_CMR|CJE_1627 [details] [associations]
symbol:CJE_1627 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:195099 "Campylobacter jejuni RM1221" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:CPDITLR RefSeq:YP_179608.1
ProteinModelPortal:Q5HSX7 STRING:Q5HSX7 GeneID:3232255
KEGG:cjr:CJE1627 PATRIC:20045051 HOGENOM:HOG000224766
ProtClustDB:CLSK872428 BioCyc:CJEJ195099:GJC0-1657-MONOMER
GO:GO:0018339 TIGRFAMs:TIGR01125 Uniprot:Q5HSX7
Length = 439
Score = 171 (65.3 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 45/160 (28%), Positives = 80/160 (50%)
Query: 144 KREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRL-LE 202
K+E + Q K +VV GC+ +R +++++ VD+ G Y + + L+
Sbjct: 52 KKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMILK 111
Query: 203 EVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERS 262
+ + +T L E + I+ NS AF+ + GCN CSFC +P +G+ +S
Sbjct: 112 KTNLFSN--STYLQSENSKRIIT----GSNS-HAFIKIAEGCNQKCSFCAIPSFKGKLKS 164
Query: 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKE 302
R + SI+ E+ +L G K+ + + Q+ +SY G EK+
Sbjct: 165 REISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKG-EKD 203
Score = 124 (48.7 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 35/136 (25%), Positives = 67/136 (49%)
Query: 371 YIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHAD 430
Y +P Q + +L+ M+RG +++ ++ P+ L + FI G GE+E + +
Sbjct: 248 YFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSA-PNSFLRTGFIVGHPGESEADFEE 306
Query: 431 TLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDS 490
+K G+D +FAYS E T A ++ V +V +RL + + E + ++
Sbjct: 307 LCEFVKDFGFDRVSVFAYSKEEDTAAFD--MEQVSFKVINKRLKIIEKIVNEVIEKSFEK 364
Query: 491 QVGTVQLVLVEGPNKK 506
+VG +LV+ G + +
Sbjct: 365 EVGQKRLVVCTGESSE 380
Score = 104 (41.7 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 32/124 (25%), Positives = 60/124 (48%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
++Y + GC N+ D EI+L + + Y E+ + P A+VI +NTC D A+ + +
Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGRL--SAY-ELCDEPSKADVIIVNTCGFIDSAKK---ESI 56
Query: 138 NYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDL 197
N L + KK+ +VV GC+ +R +++++ VD+ G Y +
Sbjct: 57 NAILDLHEQRKKDSL-----------LVVTGCLMQRYREELMKELPEVDLFTGVGDYERV 105
Query: 198 PRLL 201
++
Sbjct: 106 DEMI 109
>TIGR_CMR|SPO_0944 [details] [associations]
symbol:SPO_0944 "RNA modification enzyme, MiaB-family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 Gene3D:2.40.50.140
InterPro:IPR012340 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:CPDITLR HOGENOM:HOG000224766 GO:GO:0018339
TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
RefSeq:YP_166197.1 ProteinModelPortal:Q5LUV8 GeneID:3196011
KEGG:sil:SPO0944 PATRIC:23375173 Uniprot:Q5LUV8
Length = 466
Score = 244 (91.0 bits), Expect = 8.0e-18, P = 8.0e-18
Identities = 77/293 (26%), Positives = 134/293 (45%)
Query: 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLE 218
K K++V GC+ D I + + V GP Y ++L+ V +G +
Sbjct: 95 KENGKVIVTGCLGAE-PDYIREHHPRILAVTGPHQYE---QVLDAV-HGAVPPDP----- 144
Query: 219 ETYADISP---VRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDEL 275
+ + D+ P V+++ + ++ + GCN+ C FCI+P RG+ SRP ++++E ++L
Sbjct: 145 DPFVDLLPASGVQLTPRHYS-YLKISEGCNHKCKFCIIPDMRGKLASRPAHAVLREAEKL 203
Query: 276 WKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRL 335
GVKE+ ++ Q+ ++Y G++++ + W+ E V+ DL L
Sbjct: 204 VDNGVKELLIISQDTSAY----GLDRKYDTNL-WKNRE-------VRS---HITDLAREL 248
Query: 336 SLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREA 395
+R Y P+P + + + N+ Y+ +P Q + L+RM R
Sbjct: 249 GQLDAWVRLHYVYPYPH-VRELIPLMADAGCNLLPYLDIPFQHAHPDTLKRMARPAAAAR 307
Query: 396 YLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAY 448
LD + R+I P++ L S FI G+ GETE E L M D F Y
Sbjct: 308 TLDEIAAWREICPEITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCFQY 360
Score = 161 (61.7 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 54/192 (28%), Positives = 85/192 (44%)
Query: 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRP-NVCKYIHLP 375
++ K +++ DL L +R Y P+P EL+ +M D N+ Y+ +P
Sbjct: 230 NLWKNREVRSHITDLARELGQLDAWVRLHYVYPYPH--VRELIPLMADAGCNLLPYLDIP 287
Query: 376 AQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLM 435
Q + L+RM R LD + R+I P++ L S FI G+ GETE E L M
Sbjct: 288 FQHAHPDTLKRMARPAAAARTLDEIAAWREICPEITLRSTFIVGYPGETEAEFQTLLDWM 347
Query: 436 KAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTV 495
D F Y ++ + D VP EVKQ R + + + ++VG V
Sbjct: 348 DEAQLDRVGCFQYENVAGARSN-DLPDHVPAEVKQERWDRFMAKAQAISEAKLAARVGQV 406
Query: 496 QLVLVEGPNKKA 507
V+V+ + +A
Sbjct: 407 IEVIVDEVDDEA 418
Score = 78 (32.5 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 40/148 (27%), Positives = 66/148 (44%)
Query: 58 DLAPASEVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPE--NA 115
DLAPA+ + +A Q I + GC + D E +L+ ++ GY I+ P+ A
Sbjct: 14 DLAPAARLGTAATRP--GQPTIGMVSLGCPKALVDSERILTRLRAEGYG--IS-PDYAGA 68
Query: 116 EVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK------HPPKIVVLGC 169
+ + +NTC D A+ + L+ +E K + TG ++ H P+I L
Sbjct: 69 DAVIVNTCGFLDSAKA---ESLDAIGEALKENGKVIVTGCLGAEPDYIREHHPRI--LAV 123
Query: 170 MAERLKDKILDADKMVDVVCGPDAYRDL 197
+++LDA V PD + DL
Sbjct: 124 TGPHQYEQVLDAVHGA-VPPDPDPFVDL 150
>WB|WBGene00022363 [details] [associations]
symbol:Y92H12BL.1 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR020612 Pfam:PF04055 PROSITE:PS01278
SMART:SM00729 GO:GO:0016021 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0008033 EMBL:FO081632 RefSeq:NP_740783.2
ProteinModelPortal:Q8MXQ7 SMR:Q8MXQ7 STRING:Q8MXQ7 PaxDb:Q8MXQ7
EnsemblMetazoa:Y92H12BL.1 GeneID:190786 KEGG:cel:CELE_Y92H12BL.1
UCSC:Y92H12BL.1 CTD:190786 WormBase:Y92H12BL.1 eggNOG:COG0621
GeneTree:ENSGT00530000063447 HOGENOM:HOG000224768 InParanoid:Q8MXQ7
OMA:ILVPLEY NextBio:946956 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 Uniprot:Q8MXQ7
Length = 425
Score = 177 (67.4 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 54/196 (27%), Positives = 96/196 (48%)
Query: 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRD 364
W SE + + +GL DLL L P+ MR T+P + D +E+ I+ +
Sbjct: 115 WLTSEDLGAWGR--DIGLVLPDLLRELVKVIPDGSMMRLGMTNPPYILDHLEEIAEIL-N 171
Query: 365 RPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGET 424
P V ++H+P Q+ + AVL M+R Y+R + + + +P++ +++D I F ET
Sbjct: 172 HPKVYAFLHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTET 231
Query: 425 EEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFREST 484
E+ +++ L++ + ++ Y R T A R D E ++R + E FR T
Sbjct: 232 LEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEA--RKRTAAMSELFRSYT 289
Query: 485 GQCYDSQVGTVQLVLV 500
+ D ++G + VLV
Sbjct: 290 -RYTDERIGELHRVLV 304
Score = 111 (44.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 29/107 (27%), Positives = 54/107 (50%)
Query: 195 RDLPRLLEEVDYGQKGINT-LLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIV 253
+ + R++E V KG LL+ A +S ++ KN + +S+ GC N C++C
Sbjct: 24 KQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMRKNELIEVLSISTGCLNNCTYCKT 83
Query: 254 PFTRGRERSRPVESIVKEVDELWK-EGVKEVTLLGQNVNSYNDTSGM 299
RG S P+ +V++ + EGVKE+ L +++ ++ G+
Sbjct: 84 KMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSEDLGAWGRDIGL 130
>ZFIN|ZDB-GENE-040426-1443 [details] [associations]
symbol:cdkal1 "CDK5 regulatory subunit associated
protein 1-like 1" species:7955 "Danio rerio" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0043412 "macromolecule modification" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 ZFIN:ZDB-GENE-040426-1443 GO:GO:0016021 GO:GO:0005789
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0008033
HOGENOM:HOG000224768 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 EMBL:BC057248 IPI:IPI00510915 RefSeq:NP_956921.1
UniGene:Dr.118384 ProteinModelPortal:Q6PG34 PRIDE:Q6PG34
GeneID:393600 KEGG:dre:393600 CTD:54901 HOVERGEN:HBG097712
InParanoid:Q6PG34 KO:K15865 NextBio:20814618 ArrayExpress:Q6PG34
GO:GO:0009451 TIGRFAMs:TIGR00089 Uniprot:Q6PG34
Length = 547
Score = 207 (77.9 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 56/183 (30%), Positives = 96/183 (52%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G LL RL E PE +R T+P + + +E+ I++ P V ++H+P Q
Sbjct: 260 RDIGSDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEMSRILQ-HPRVFSFLHVPLQ 318
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+ + +VL MRR Y + LV +++ +P + +++D ICGF GET+E+ TL L++
Sbjct: 319 SASDSVLMEMRREYCCADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRR 378
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQL 497
+ ++ + R T A + +P VK++R EL F + YD ++G Q
Sbjct: 379 YRFPSLFINQFYPRPGTPAA--LMQQLPAHVKKQRTKELSALFHSY--RPYDHKMGEQQQ 434
Query: 498 VLV 500
VLV
Sbjct: 435 VLV 437
Score = 147 (56.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 59/234 (25%), Positives = 105/234 (44%)
Query: 155 RSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINT- 213
R + K+V+ GC+ + +D K + ++ + + R++E VD KG +
Sbjct: 119 RKAQEQNKKVVLAGCVPQA--QPRMDYIKDLSII----GVQQIDRVVEVVDEAIKGHSVR 172
Query: 214 LLSLEETY------ADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVES 267
LL ++ A + +I KN + +S+ GC N C++C RG S PVE
Sbjct: 173 LLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEE 232
Query: 268 IVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLR 327
+V+ V + ++EGV E+ L ++ +Y G + P WRL E ++ +G+
Sbjct: 233 LVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSDL---PTLLWRLVEEIPEGAMLR-LGMT 288
Query: 328 ----FADLLDRLS--LEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCK-YIHL 374
+ L+ +S L+ P + F + + D +L MR R C + HL
Sbjct: 289 NPPYILEHLEEMSRILQHPRV-FSFLHVPLQSASDSVLMEMR-REYCCADFTHL 340
Score = 80 (33.2 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 69 TGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDY 128
T S + +++ +T+GC N +D E + + AGY ++ +A++ +N+C ++
Sbjct: 51 TDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGY-QITEDSSDADLWLLNSCTVKSP 109
Query: 129 AE 130
AE
Sbjct: 110 AE 111
>UNIPROTKB|P0AEI4 [details] [associations]
symbol:rimO "ribosomal protein S12 D88
methylthiotransferase" species:83333 "Escherichia coli K-12"
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=IEA] [GO:0035599 "aspartic acid
methylthiotransferase activity" evidence=IDA;IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0018339
"peptidyl-L-beta-methylthioaspartic acid biosynthetic process from
peptidyl-aspartic acid" evidence=IEA;IMP;IDA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] HAMAP:MF_01865 InterPro:IPR005839
InterPro:IPR005840 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 TIGRFAMs:TIGR01125 KO:K14441 PIR:C64821
RefSeq:NP_415356.1 RefSeq:YP_489108.1 ProteinModelPortal:P0AEI4
SMR:P0AEI4 DIP:DIP-48218N IntAct:P0AEI4 PRIDE:P0AEI4
EnsemblBacteria:EBESCT00000004134 EnsemblBacteria:EBESCT00000017680
GeneID:12932851 GeneID:945465 KEGG:ecj:Y75_p0808 KEGG:eco:b0835
PATRIC:32116873 EchoBASE:EB3251 EcoGene:EG13478
ProtClustDB:PRK14862 BioCyc:EcoCyc:G6435-MONOMER
BioCyc:ECOL316407:JW0819-MONOMER BioCyc:MetaCyc:G6435-MONOMER
Genevestigator:P0AEI4 GO:GO:0035599 Uniprot:P0AEI4
Length = 441
Score = 191 (72.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 54/196 (27%), Positives = 97/196 (49%)
Query: 306 GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDR 365
G + + GF++ VK + + L +L + R Y P+P D+++ +M +
Sbjct: 200 GVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIW---TRLHYVYPYPH--VDDVIPLMAEG 254
Query: 366 PNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETE 425
+ Y+ +P Q + +L+ M+R + + L +++ R+I P++ L S FI GF GETE
Sbjct: 255 -KILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETE 313
Query: 426 EEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTG 485
E+ L +K D F YS E A+ D VPEEVK+ R ++ ++ +
Sbjct: 314 EDFQMLLDFLKEARLDRVGCFKYSPVEGADANA-LPDQVPEEVKEERWNRFMQLQQQISA 372
Query: 486 QCYDSQVGTVQLVLVE 501
+ +VG LV+++
Sbjct: 373 ERLQEKVGREILVIID 388
Score = 173 (66.0 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 53/193 (27%), Positives = 93/193 (48%)
Query: 163 KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD-YGQKGI-NTLLSLEET 220
K++V GC+ + +D+I + V + GP +Y ++LE V Y K N LSL
Sbjct: 76 KVIVTGCLGAK-EDQIREVHPKVLEITGPHSYE---QVLEHVHHYVPKPKHNPFLSLVPE 131
Query: 221 YADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGV 280
V+++ A++ + GCN+ C+FCI+P RG SRP+ ++ E L GV
Sbjct: 132 QG----VKLTPRHY-AYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGV 186
Query: 281 KEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340
KE+ ++ Q+ ++Y G + + GF++ VK + + L +L + +
Sbjct: 187 KEILVISQDTSAY------------GVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGI-WT 233
Query: 341 EMRFRYTSPHPKD 353
+ + Y PH D
Sbjct: 234 RLHYVYPYPHVDD 246
Score = 86 (35.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 71 SEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYA 129
S+V Q +I + GC N+ D E +L+ ++ GY +V+ ++A+++ +NTC D A
Sbjct: 2 SKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGY-DVVPSYDDADMVIVNTCGFIDSA 59
>UNIPROTKB|Q8EA37 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_01865 InterPro:IPR005839
InterPro:IPR005840 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 OMA:RVDTEHM RefSeq:NP_719602.1
ProteinModelPortal:Q8EA37 PRIDE:Q8EA37 GeneID:1171692
KEGG:son:SO_4072 PATRIC:23527796 Uniprot:Q8EA37
Length = 481
Score = 171 (65.3 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 46/160 (28%), Positives = 80/160 (50%)
Query: 342 MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQ 401
+R Y P+P + D+L+ +M + + Y+ +P Q + +L+ M+R + L+ +Q
Sbjct: 263 VRLHYIYPYP--WVDDLIPLMAEGL-ILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQ 319
Query: 402 KIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYV 461
+ R+I PD+ + S FI GF GETEE+ L ++ D F YS E A+
Sbjct: 320 RWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVAN-TIA 378
Query: 462 DDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVE 501
+ + EEVK+ R +E E + + VG +L++
Sbjct: 379 ELISEEVKEDRYHRFMEVQAEISAERLARFVGRTMDILID 418
Score = 147 (56.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 79/354 (22%), Positives = 152/354 (42%)
Query: 137 LNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRD 196
+N F+ ++++ R + K++V GC+ + +++I + V + GP +Y
Sbjct: 80 VNTCGFIDAAVEESLDAVREALEENGKVIVTGCLGAK-ENQIREVHPDVLEITGPHSYEA 138
Query: 197 LPRLLEEVDYGQKGI-NTLLSL-EETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVP 254
+ + + + Y K N SL +T ++P A++ + GC+N C+FCI+P
Sbjct: 139 VLKHVHK--YVPKPEHNPFTSLIPQTGVKLTPKHY------AYLKISEGCDNRCTFCIIP 190
Query: 255 FTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEG 314
RG SR S++ E L + GV+E+ ++ Q+ ++Y G + G + +
Sbjct: 191 ALRGDLDSRGAGSVLDEAKRLVEAGVQEILVVSQDTSAYGKDKGGRTDFWNGMP--VKQD 248
Query: 315 FNSMCK-VKKMG--LRFADLLDRLSLE--FPEMRFRYTSPHPKDFPDELLYIMRDRPNVC 369
S+ + + KMG +R + ++ P M P+ D P + P +
Sbjct: 249 ITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEGLILPY-LDIP-----MQHASPRIL 302
Query: 370 KYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG-LSSDF--ICGFCGETEE 426
K + P + LE ++R RE DLV + I+ G DF + F E
Sbjct: 303 KMMKRPGRVDRQ--LEAIQRW--REICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARL 358
Query: 427 EHADTLTLMK---AVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELI 477
+ + AV +A + + ++E + HR +++ V E+ RL +
Sbjct: 359 DRVGCFKYSEVEGAVANTIAELISEEVKEDRY-HR-FME-VQAEISAERLARFV 409
Score = 108 (43.1 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 44 FIAQSSLTASQPLADLAPASEVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNA 103
F + + T P L AS S TG+ V + RI + GC N+ D E +L+ ++
Sbjct: 6 FHPKQTTTLETPAKTLEAASADSVNTGN-VATGNRIGFVSLGCPKNLVDSERILTQLRID 64
Query: 104 GYSEVINVPENAEVIFINTCAIRDYA 129
GY EV N +NA+++ +NTC D A
Sbjct: 65 GY-EVTNSYDNADLVIVNTCGFIDAA 89
>TIGR_CMR|SO_4072 [details] [associations]
symbol:SO_4072 "MiaB-like putative RNA modifying enzyme
YliG" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0009451 "RNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 OMA:RVDTEHM RefSeq:NP_719602.1
ProteinModelPortal:Q8EA37 PRIDE:Q8EA37 GeneID:1171692
KEGG:son:SO_4072 PATRIC:23527796 Uniprot:Q8EA37
Length = 481
Score = 171 (65.3 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 46/160 (28%), Positives = 80/160 (50%)
Query: 342 MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQ 401
+R Y P+P + D+L+ +M + + Y+ +P Q + +L+ M+R + L+ +Q
Sbjct: 263 VRLHYIYPYP--WVDDLIPLMAEGL-ILPYLDIPMQHASPRILKMMKRPGRVDRQLEAIQ 319
Query: 402 KIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYV 461
+ R+I PD+ + S FI GF GETEE+ L ++ D F YS E A+
Sbjct: 320 RWREICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVAN-TIA 378
Query: 462 DDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVE 501
+ + EEVK+ R +E E + + VG +L++
Sbjct: 379 ELISEEVKEDRYHRFMEVQAEISAERLARFVGRTMDILID 418
Score = 147 (56.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 79/354 (22%), Positives = 152/354 (42%)
Query: 137 LNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRD 196
+N F+ ++++ R + K++V GC+ + +++I + V + GP +Y
Sbjct: 80 VNTCGFIDAAVEESLDAVREALEENGKVIVTGCLGAK-ENQIREVHPDVLEITGPHSYEA 138
Query: 197 LPRLLEEVDYGQKGI-NTLLSL-EETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVP 254
+ + + + Y K N SL +T ++P A++ + GC+N C+FCI+P
Sbjct: 139 VLKHVHK--YVPKPEHNPFTSLIPQTGVKLTPKHY------AYLKISEGCDNRCTFCIIP 190
Query: 255 FTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEG 314
RG SR S++ E L + GV+E+ ++ Q+ ++Y G + G + +
Sbjct: 191 ALRGDLDSRGAGSVLDEAKRLVEAGVQEILVVSQDTSAYGKDKGGRTDFWNGMP--VKQD 248
Query: 315 FNSMCK-VKKMG--LRFADLLDRLSLE--FPEMRFRYTSPHPKDFPDELLYIMRDRPNVC 369
S+ + + KMG +R + ++ P M P+ D P + P +
Sbjct: 249 ITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEGLILPY-LDIP-----MQHASPRIL 302
Query: 370 KYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG-LSSDF--ICGFCGETEE 426
K + P + LE ++R RE DLV + I+ G DF + F E
Sbjct: 303 KMMKRPGRVDRQ--LEAIQRW--REICPDLVIRSTFIVGFPGETEEDFEMLLDFLREARL 358
Query: 427 EHADTLTLMK---AVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELI 477
+ + AV +A + + ++E + HR +++ V E+ RL +
Sbjct: 359 DRVGCFKYSEVEGAVANTIAELISEEVKEDRY-HR-FME-VQAEISAERLARFV 409
Score = 108 (43.1 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 44 FIAQSSLTASQPLADLAPASEVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNA 103
F + + T P L AS S TG+ V + RI + GC N+ D E +L+ ++
Sbjct: 6 FHPKQTTTLETPAKTLEAASADSVNTGN-VATGNRIGFVSLGCPKNLVDSERILTQLRID 64
Query: 104 GYSEVINVPENAEVIFINTCAIRDYA 129
GY EV N +NA+++ +NTC D A
Sbjct: 65 GY-EVTNSYDNADLVIVNTCGFIDAA 89
>TIGR_CMR|NSE_0785 [details] [associations]
symbol:NSE_0785 "tRNA modification enzyme, MiaB family"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_506660.1 ProteinModelPortal:Q2GCY6 STRING:Q2GCY6
GeneID:3931918 KEGG:nse:NSE_0785 PATRIC:22681565 OMA:VITFGCR
ProtClustDB:CLSK2528053 BioCyc:NSEN222891:GHFU-796-MONOMER
Uniprot:Q2GCY6
Length = 429
Score = 193 (73.0 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 49/176 (27%), Positives = 96/176 (54%)
Query: 331 LLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389
LL ++ + PE+ R R +S + D+ + + + ++HL Q+G+S +L+RM+R
Sbjct: 215 LLKKILNDVPELKRLRLSSVDVSELSDDFIELFATEARLMPHLHLSIQSGDSIILKRMKR 274
Query: 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449
+T E ++ KI + P+ G +D I GF E+EE ++ L+K + ++F +S
Sbjct: 275 RHTPEQVVEFHSKILAVRPETGFGADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFS 334
Query: 450 MRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDS-QVGTVQLVLVEGPN 504
++ T A + V VK+ R +LI+ +E+ Q +++ QVG++ +++E N
Sbjct: 335 PKKGTKAA--LMPQVDGVVKKGRARKLIKLGKENL-QIFNTMQVGSIHNLVLERDN 387
Score = 138 (53.6 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 35/117 (29%), Positives = 62/117 (52%)
Query: 226 PVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTL 285
PV +S AF+ + GC++ C+FC + RG+ RS +IV EV ++ G+ EV L
Sbjct: 136 PV-VSAVRKRAFLEIQNGCDHDCTFCAITLARGKNRSSDAMTIVSEVRKIVAFGINEVVL 194
Query: 286 LGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342
G ++ Y G + +P + L + N + ++K++ L D+ + LS +F E+
Sbjct: 195 TGVDITDY----GKDLFGKPALVYLLKKILNDVPELKRLRLSSVDVSE-LSDDFIEL 246
Score = 74 (31.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 83 TYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142
T+GC++N + +++ KN ++ + ++ E I INTCA+ + A +V Q++
Sbjct: 19 TFGCRLNFYESDLI----KN-----LVGIRDSRECIIINTCAVTNEAVRQVKQKIRKCH- 68
Query: 143 LKRE-WKKNVATG-------RSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDA 193
K E KK + G + S+ P VLG + E+LK + +++ + V DA
Sbjct: 69 -KDEPSKKIIVVGCGPQLDPHAYSRMPGVFKVLGNV-EKLKAENYASEQKIAVADITDA 125
>UNIPROTKB|F1LV76 [details] [associations]
symbol:F1LV76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA]
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
IPI:IPI00190732 ProteinModelPortal:F1LV76
Ensembl:ENSRNOT00000024854 Uniprot:F1LV76
Length = 164
Score = 149 (57.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 39/151 (25%), Positives = 79/151 (52%)
Query: 322 KKMGLRFADLLDRLSLEFPE---MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQ 377
+ +G LL +L PE +R T+P + + +E+ I+ + P V ++H+P Q
Sbjct: 17 RDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKIL-NHPRVYAFLHIPVQ 75
Query: 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437
+ + +VL M+R Y + +V +++ +P + +++D ICGF GET+++ +T+ L++
Sbjct: 76 SASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEE 135
Query: 438 VGYDMAYMFAYSMRERTHAHRNYVDDVPEEV 468
+ ++ + R T A + VP V
Sbjct: 136 YKFPSLFINQFYPRPGTPAAK--AKQVPAHV 164
>TIGR_CMR|CJE_1086 [details] [associations]
symbol:CJE_1086 "MiaB-like tRNA modifying enzyme"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
PIR:C81376 RefSeq:YP_179079.1 ProteinModelPortal:Q5HUF6
STRING:Q5HUF6 GeneID:3231595 KEGG:cjr:CJE1086 PATRIC:20043981
KO:K03423 OMA:GCRTNLF ProtClustDB:CLSK872324
BioCyc:CJEJ195099:GJC0-1112-MONOMER Uniprot:Q5HUF6
Length = 416
Score = 150 (57.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 43/136 (31%), Positives = 68/136 (50%)
Query: 163 KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYA 222
K+++ GC A ++LD K V V G + +D + E + L +L
Sbjct: 69 KVILTGCGAVSKGKELLDK-KQVFGVLGA-SNKDK---INEFLGAKTSFYELGNLNFIDK 123
Query: 223 DISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKE 282
DI V +N AFV + GC+ CS+CI+P RG+ RS ++++K+V+ L G E
Sbjct: 124 DI--VCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVEILGANGYSE 181
Query: 283 VTLLGQNVNSYNDTSG 298
+ L G N+ SY +G
Sbjct: 182 IVLTGTNIGSYGLKNG 197
Score = 105 (42.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 30/105 (28%), Positives = 58/105 (55%)
Query: 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRL 137
+++ +T+GC+ N+ D E++ S +K+ Y E+IN A++I +N+C + + A+ + +
Sbjct: 4 KVFFKTFGCRTNIYDTELLKSYVKD--Y-EIINDENKAQIIVVNSCTVTNGADSGIKSYV 60
Query: 138 NYFWFLKREWKKNVATGR---SQSKHP-PKIVVLGCMAERLKDKI 178
N ++++ K + TG S+ K K V G + KDKI
Sbjct: 61 NT---MQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI 102
Score = 99 (39.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 50/187 (26%), Positives = 73/187 (39%)
Query: 295 DTSGMEKEVEP-GANWRLSE----GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP 349
D + K+VE GAN SE G N K G LL ++ R R S
Sbjct: 163 DEKALLKQVEILGANG-YSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRLGSL 221
Query: 350 HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPD 409
P + L I+ D + +++H+ Q + +L MRR + L L I
Sbjct: 222 EPAQLDESFLEIL-DEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS--KG 278
Query: 410 VGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469
L +DFI GE+EE + L K + F +S R TH+ D + +
Sbjct: 279 YALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHS-ATMKDVINGTLA 337
Query: 470 QRRLTEL 476
+ RL L
Sbjct: 338 KERLNTL 344
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 524 524 0.00090 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 74
No. of states in DFA: 622 (66 KB)
Total size of DFA: 316 KB (2162 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 44.04u 0.08s 44.12t Elapsed: 00:00:02
Total cpu time: 44.07u 0.08s 44.15t Elapsed: 00:00:02
Start: Fri May 10 17:40:22 2013 End: Fri May 10 17:40:24 2013