Query 041524
Match_columns 524
No_of_seqs 449 out of 2609
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2492 CDK5 activator-binding 100.0 4E-106 9E-111 799.6 33.8 471 37-524 34-507 (552)
2 COG0621 MiaB 2-methylthioadeni 100.0 1.3E-87 2.9E-92 700.2 44.7 403 76-524 2-407 (437)
3 PRK14332 (dimethylallyl)adenos 100.0 3.2E-81 6.9E-86 667.5 48.5 406 75-524 9-415 (449)
4 PRK14329 (dimethylallyl)adenos 100.0 1.4E-80 3E-85 666.6 48.9 417 74-524 21-437 (467)
5 PRK14340 (dimethylallyl)adenos 100.0 3.6E-80 7.8E-85 659.2 47.5 406 77-524 7-412 (445)
6 PRK14327 (dimethylallyl)adenos 100.0 2.2E-79 4.8E-84 658.2 48.8 408 75-524 65-475 (509)
7 PRK14335 (dimethylallyl)adenos 100.0 1.4E-78 3E-83 649.7 48.2 409 77-524 1-421 (455)
8 PRK14337 (dimethylallyl)adenos 100.0 4.5E-78 9.7E-83 644.6 48.4 410 75-523 2-414 (446)
9 PRK14326 (dimethylallyl)adenos 100.0 8.3E-78 1.8E-82 648.9 49.3 410 74-524 11-423 (502)
10 PRK14331 (dimethylallyl)adenos 100.0 5E-78 1.1E-82 643.4 46.9 403 77-524 1-406 (437)
11 PRK14333 (dimethylallyl)adenos 100.0 1.1E-77 2.4E-82 642.3 46.6 412 77-524 7-418 (448)
12 PRK14325 (dimethylallyl)adenos 100.0 2.7E-77 5.9E-82 639.5 47.3 407 77-524 4-411 (444)
13 PRK14330 (dimethylallyl)adenos 100.0 1.7E-76 3.8E-81 631.3 46.6 402 77-524 1-402 (434)
14 PRK14328 (dimethylallyl)adenos 100.0 1E-75 2.3E-80 625.9 47.0 407 76-524 1-410 (439)
15 PRK14336 (dimethylallyl)adenos 100.0 1.8E-75 3.9E-80 619.4 46.2 384 77-524 2-385 (418)
16 TIGR01574 miaB-methiolase tRNA 100.0 5.8E-75 1.3E-79 620.0 47.3 409 78-524 1-410 (438)
17 TIGR01579 MiaB-like-C MiaB-lik 100.0 9.5E-75 2.1E-79 615.1 45.5 396 81-524 1-398 (414)
18 TIGR00089 RNA modification enz 100.0 2.6E-74 5.6E-79 614.5 45.3 400 78-524 1-402 (429)
19 TIGR01125 MiaB-like tRNA modif 100.0 5.3E-73 1.1E-77 604.1 46.8 394 78-521 1-395 (430)
20 PRK14338 (dimethylallyl)adenos 100.0 6.9E-73 1.5E-77 606.3 47.8 398 73-524 17-419 (459)
21 PRK14334 (dimethylallyl)adenos 100.0 7.9E-72 1.7E-76 595.9 46.4 397 78-524 2-399 (440)
22 PRK14339 (dimethylallyl)adenos 100.0 7.3E-72 1.6E-76 592.1 45.3 390 88-524 1-391 (420)
23 PRK14862 rimO ribosomal protei 100.0 1E-70 2.2E-75 586.6 45.6 395 76-521 7-403 (440)
24 TIGR01578 MiaB-like-B MiaB-lik 100.0 1.5E-69 3.3E-74 575.1 45.5 388 78-524 1-392 (420)
25 KOG4355 Predicted Fe-S oxidore 100.0 2.4E-51 5.1E-56 405.9 30.1 426 38-523 14-446 (547)
26 TIGR02026 BchE magnesium-proto 100.0 5E-47 1.1E-51 410.8 33.8 320 80-460 19-387 (497)
27 TIGR03471 HpnJ hopanoid biosyn 100.0 8.7E-45 1.9E-49 391.8 28.2 318 79-460 30-387 (472)
28 PRK00955 hypothetical protein; 100.0 1.9E-39 4.1E-44 350.6 32.0 398 81-502 27-590 (620)
29 PRK01254 hypothetical protein; 100.0 4.9E-37 1.1E-41 329.0 33.8 266 234-502 372-674 (707)
30 PRK05481 lipoyl synthase; Prov 100.0 1.5E-31 3.3E-36 270.2 23.7 216 232-487 51-266 (289)
31 COG1032 Fe-S oxidoreductase [E 100.0 8.5E-31 1.8E-35 283.1 29.1 270 160-459 101-404 (490)
32 PRK07094 biotin synthase; Prov 99.9 2.4E-26 5.1E-31 236.8 24.3 186 235-458 40-227 (323)
33 PRK05904 coproporphyrinogen II 99.9 1.7E-26 3.8E-31 239.8 21.2 219 233-488 6-231 (353)
34 PRK05628 coproporphyrinogen II 99.9 1.3E-25 2.8E-30 235.8 23.5 218 235-488 4-241 (375)
35 PRK08599 coproporphyrinogen II 99.9 8.1E-26 1.8E-30 237.6 21.2 213 234-482 2-227 (377)
36 TIGR00510 lipA lipoate synthas 99.9 3.2E-25 7E-30 224.1 23.3 195 231-458 60-256 (302)
37 PRK07379 coproporphyrinogen II 99.9 3.5E-25 7.6E-30 234.1 23.5 222 225-482 2-242 (400)
38 PF00919 UPF0004: Uncharacteri 99.9 3.2E-26 6.9E-31 193.8 12.0 98 78-190 1-98 (98)
39 PRK12928 lipoyl synthase; Prov 99.9 5.5E-25 1.2E-29 222.0 22.8 211 232-483 58-270 (290)
40 PRK08207 coproporphyrinogen II 99.9 8.6E-25 1.9E-29 235.2 25.5 222 232-488 162-400 (488)
41 PRK09058 coproporphyrinogen II 99.9 6E-25 1.3E-29 235.5 21.5 193 233-461 61-265 (449)
42 PRK05799 coproporphyrinogen II 99.9 4.4E-25 9.5E-30 231.8 20.0 191 235-461 5-201 (374)
43 PRK08446 coproporphyrinogen II 99.9 2.1E-24 4.6E-29 224.4 22.4 191 236-462 3-201 (350)
44 PRK09057 coproporphyrinogen II 99.9 8.9E-24 1.9E-28 222.1 23.5 214 234-483 5-231 (380)
45 TIGR00539 hemN_rel putative ox 99.9 1E-23 2.2E-28 220.4 21.8 210 235-480 2-221 (360)
46 TIGR01210 conserved hypothetic 99.9 6.6E-24 1.4E-28 217.0 19.5 193 234-461 15-223 (313)
47 TIGR01212 radical SAM protein, 99.9 1.6E-23 3.4E-28 213.4 22.0 193 235-461 19-228 (302)
48 PRK08898 coproporphyrinogen II 99.9 1.6E-23 3.4E-28 221.1 22.2 217 234-487 20-249 (394)
49 PRK06582 coproporphyrinogen II 99.9 2.6E-23 5.6E-28 218.8 23.0 218 231-484 9-239 (390)
50 PRK06294 coproporphyrinogen II 99.9 2.3E-23 5.1E-28 218.1 22.0 190 234-460 7-204 (370)
51 PRK08208 coproporphyrinogen II 99.9 2.3E-23 5E-28 222.3 21.9 213 232-482 38-262 (430)
52 PRK05660 HemN family oxidoredu 99.9 8.5E-23 1.8E-27 214.5 23.3 212 234-482 7-230 (378)
53 PRK06256 biotin synthase; Vali 99.9 2.3E-22 4.9E-27 208.3 23.1 194 241-474 65-262 (336)
54 TIGR00433 bioB biotin syntheta 99.9 5.9E-22 1.3E-26 201.6 24.6 202 235-476 29-235 (296)
55 PRK08629 coproporphyrinogen II 99.9 6.7E-22 1.4E-26 210.5 24.0 190 232-457 51-245 (433)
56 PRK13347 coproporphyrinogen II 99.9 8E-22 1.7E-26 211.8 23.1 189 233-457 50-250 (453)
57 COG1031 Uncharacterized Fe-S o 99.9 1.5E-20 3.2E-25 191.8 30.6 308 184-521 126-474 (560)
58 smart00729 Elp3 Elongator prot 99.9 8.6E-22 1.9E-26 188.0 20.2 191 235-460 2-201 (216)
59 TIGR00538 hemN oxygen-independ 99.9 1.3E-21 2.7E-26 210.6 23.7 186 234-455 50-247 (455)
60 PLN02428 lipoic acid synthase 99.9 1.8E-21 4E-26 199.1 22.4 210 234-483 102-313 (349)
61 PRK09249 coproporphyrinogen II 99.9 4.9E-21 1.1E-25 205.8 22.6 187 234-456 50-248 (453)
62 COG0635 HemN Coproporphyrinoge 99.9 8.9E-21 1.9E-25 200.5 21.5 227 233-499 34-276 (416)
63 TIGR00423 radical SAM domain p 99.9 4.5E-20 9.7E-25 189.0 20.7 188 235-457 6-210 (309)
64 TIGR01211 ELP3 histone acetylt 99.9 3.8E-20 8.2E-25 199.6 21.1 187 242-460 76-309 (522)
65 TIGR03551 F420_cofH 7,8-dideme 99.8 4.6E-20 9.9E-25 191.5 20.0 188 236-458 41-244 (343)
66 PRK06245 cofG FO synthase subu 99.8 5.5E-20 1.2E-24 190.5 20.4 197 233-458 11-219 (336)
67 TIGR03550 F420_cofG 7,8-dideme 99.8 2.1E-19 4.5E-24 185.0 19.5 201 234-458 4-215 (322)
68 cd01335 Radical_SAM Radical SA 99.8 7.7E-19 1.7E-23 165.4 19.2 183 238-457 1-187 (204)
69 PRK08508 biotin synthase; Prov 99.8 2.4E-18 5.1E-23 173.6 22.5 181 240-457 13-197 (279)
70 TIGR03700 mena_SCO4494 putativ 99.8 1.5E-18 3.2E-23 180.6 19.2 187 236-458 50-253 (351)
71 PF04055 Radical_SAM: Radical 99.8 1E-18 2.2E-23 160.0 15.3 161 238-435 1-166 (166)
72 COG1242 Predicted Fe-S oxidore 99.8 1.4E-17 3.1E-22 161.1 22.7 177 327-517 101-279 (312)
73 PRK08445 hypothetical protein; 99.8 3.9E-18 8.4E-23 176.9 17.9 188 236-458 44-247 (348)
74 TIGR03699 mena_SCO4550 menaqui 99.8 4.3E-18 9.4E-23 176.6 18.3 188 236-458 43-246 (340)
75 PRK06267 hypothetical protein; 99.8 2.9E-17 6.3E-22 170.7 23.5 179 235-458 28-214 (350)
76 PLN02389 biotin synthase 99.8 4.8E-17 1E-21 170.0 24.1 201 235-474 83-290 (379)
77 COG1243 ELP3 Histone acetyltra 99.7 1.7E-16 3.7E-21 163.0 19.1 190 241-462 74-303 (515)
78 PRK09240 thiH thiamine biosynt 99.7 1.2E-15 2.6E-20 159.8 21.7 200 236-477 76-286 (371)
79 PRK15108 biotin synthase; Prov 99.7 2.6E-15 5.7E-20 155.7 23.0 201 235-476 43-250 (345)
80 TIGR02351 thiH thiazole biosyn 99.6 1.1E-14 2.4E-19 152.4 20.4 202 236-479 75-287 (366)
81 PRK07360 FO synthase subunit 2 99.6 5.2E-15 1.1E-19 155.1 16.3 189 236-458 62-266 (371)
82 COG0502 BioB Biotin synthase a 99.6 3.3E-14 7.2E-19 144.0 19.0 186 234-458 50-241 (335)
83 PRK05926 hypothetical protein; 99.6 2.7E-14 5.9E-19 149.0 18.5 185 238-458 72-272 (370)
84 PRK00164 moaA molybdenum cofac 99.6 2.4E-13 5.1E-18 140.7 23.3 199 234-473 17-219 (331)
85 PRK08444 hypothetical protein; 99.6 4.1E-14 8.9E-19 146.8 16.5 187 236-458 51-254 (353)
86 PTZ00413 lipoate synthase; Pro 99.6 4.6E-13 1E-17 136.9 22.3 209 234-483 149-361 (398)
87 PRK13361 molybdenum cofactor b 99.5 6.4E-13 1.4E-17 137.4 22.4 199 234-473 14-215 (329)
88 PRK09613 thiH thiamine biosynt 99.5 6.7E-13 1.5E-17 141.9 22.0 197 235-470 85-298 (469)
89 PRK05927 hypothetical protein; 99.5 2E-13 4.3E-18 141.6 16.8 187 237-458 48-250 (350)
90 TIGR03822 AblA_like_2 lysine-2 99.5 1.6E-12 3.4E-17 133.8 22.9 184 231-457 85-276 (321)
91 TIGR02666 moaA molybdenum cofa 99.5 2.9E-12 6.2E-17 132.8 23.2 184 234-457 10-199 (334)
92 PRK09234 fbiC FO synthase; Rev 99.5 1.1E-12 2.5E-17 149.0 21.3 186 237-457 529-730 (843)
93 TIGR02668 moaA_archaeal probab 99.5 3.8E-12 8.3E-17 130.0 22.8 178 234-452 10-189 (302)
94 PLN02951 Molybderin biosynthes 99.4 3.1E-11 6.7E-16 126.7 23.6 197 235-473 59-259 (373)
95 COG0320 LipA Lipoate synthase 99.4 3.7E-11 8E-16 116.7 20.2 214 231-487 67-283 (306)
96 TIGR02493 PFLA pyruvate format 99.4 7.5E-11 1.6E-15 116.0 20.1 180 236-457 17-205 (235)
97 PRK05301 pyrroloquinoline quin 99.3 5.6E-10 1.2E-14 117.7 24.8 177 233-450 15-193 (378)
98 PRK14455 ribosomal RNA large s 99.3 2.5E-10 5.5E-15 118.8 21.6 187 232-456 107-307 (356)
99 PRK14463 ribosomal RNA large s 99.3 1.7E-10 3.8E-15 119.6 19.8 184 232-454 101-293 (349)
100 PRK09234 fbiC FO synthase; Rev 99.3 9E-11 2E-15 133.7 19.0 199 236-458 73-284 (843)
101 TIGR02109 PQQ_syn_pqqE coenzym 99.3 7.8E-10 1.7E-14 115.7 24.7 174 234-448 7-182 (358)
102 TIGR00238 KamA family protein. 99.3 2.8E-10 6.1E-15 117.6 20.9 182 232-457 111-299 (331)
103 PRK14456 ribosomal RNA large s 99.2 1.6E-09 3.4E-14 113.1 23.1 186 232-456 119-323 (368)
104 TIGR02495 NrdG2 anaerobic ribo 99.2 1.6E-09 3.4E-14 103.2 20.6 165 233-439 15-183 (191)
105 COG1060 ThiH Thiamine biosynth 99.1 1.2E-09 2.6E-14 113.7 17.3 185 235-454 60-261 (370)
106 PRK14460 ribosomal RNA large s 99.1 6.4E-09 1.4E-13 108.2 22.7 185 233-456 101-302 (354)
107 PRK11145 pflA pyruvate formate 99.1 3.3E-09 7.1E-14 105.2 19.6 181 235-455 21-209 (246)
108 TIGR01290 nifB nitrogenase cof 99.1 1.3E-08 2.9E-13 108.9 25.4 187 234-457 24-236 (442)
109 COG2896 MoaA Molybdenum cofact 99.1 1.1E-08 2.3E-13 103.8 21.7 197 235-475 12-214 (322)
110 cd02068 radical_SAM_B12_BD B12 99.1 4.2E-10 9.1E-15 100.1 10.4 97 93-208 5-114 (127)
111 PRK14466 ribosomal RNA large s 99.1 1.2E-08 2.5E-13 105.2 22.3 185 232-455 101-294 (345)
112 PRK14457 ribosomal RNA large s 99.1 1.4E-08 3.1E-13 105.2 22.0 186 232-456 99-300 (345)
113 TIGR00048 radical SAM enzyme, 99.1 1.9E-08 4E-13 104.9 22.2 186 232-456 103-303 (355)
114 PF02310 B12-binding: B12 bind 99.1 1.8E-10 3.8E-15 101.3 6.1 91 93-201 17-121 (121)
115 PRK14470 ribosomal RNA large s 99.1 2.7E-08 5.9E-13 102.7 23.2 184 232-453 95-288 (336)
116 PRK14459 ribosomal RNA large s 99.1 2.6E-08 5.7E-13 103.7 22.8 188 232-457 119-330 (373)
117 PRK14468 ribosomal RNA large s 99.0 3.7E-08 8.1E-13 102.2 22.9 184 232-454 91-289 (343)
118 COG1856 Uncharacterized homolo 99.0 1.1E-08 2.4E-13 96.7 15.9 181 240-458 17-198 (275)
119 PRK14469 ribosomal RNA large s 99.0 7.1E-08 1.5E-12 100.3 23.7 183 232-453 99-293 (343)
120 COG2100 Predicted Fe-S oxidore 99.0 8.9E-08 1.9E-12 95.2 21.2 179 236-452 109-301 (414)
121 TIGR03821 AblA_like_1 lysine-2 99.0 4.7E-08 1E-12 100.7 20.0 176 235-456 97-281 (321)
122 PRK14462 ribosomal RNA large s 99.0 8.5E-08 1.8E-12 99.5 21.7 186 232-456 108-308 (356)
123 PRK14467 ribosomal RNA large s 99.0 5.7E-08 1.2E-12 100.7 20.5 189 232-456 97-299 (348)
124 TIGR03820 lys_2_3_AblA lysine- 99.0 8.7E-08 1.9E-12 100.9 21.9 182 232-458 106-295 (417)
125 COG1244 Predicted Fe-S oxidore 99.0 4.9E-08 1.1E-12 97.3 18.5 192 236-458 49-255 (358)
126 TIGR03470 HpnH hopanoid biosyn 99.0 1.1E-07 2.5E-12 97.9 22.1 176 234-454 28-206 (318)
127 PRK14453 chloramphenicol/florf 98.9 1.7E-07 3.8E-12 97.2 23.0 183 234-454 100-296 (347)
128 PRK11194 ribosomal RNA large s 98.9 1.4E-07 3E-12 98.6 22.1 186 232-456 101-307 (372)
129 PRK14464 ribosomal RNA large s 98.9 3.8E-08 8.3E-13 101.4 17.7 182 234-457 96-288 (344)
130 PRK14461 ribosomal RNA large s 98.9 1.4E-07 2.9E-12 97.6 21.3 185 232-457 105-323 (371)
131 PRK14465 ribosomal RNA large s 98.9 2.4E-07 5.2E-12 95.7 21.9 181 232-450 103-294 (342)
132 PRK14454 ribosomal RNA large s 98.8 3.2E-07 7E-12 95.1 21.0 186 232-455 99-295 (342)
133 PRK13762 tRNA-modifying enzyme 98.8 3E-07 6.5E-12 94.7 20.6 172 241-454 65-265 (322)
134 COG2516 Biotin synthase-relate 98.8 9.5E-08 2.1E-12 95.2 14.6 139 356-502 131-273 (339)
135 KOG2672 Lipoate synthase [Coen 98.8 1.5E-07 3.2E-12 91.7 15.1 181 235-450 111-295 (360)
136 COG0731 Fe-S oxidoreductases [ 98.7 1.5E-06 3.1E-11 87.4 20.1 175 243-458 33-221 (296)
137 KOG2900 Biotin synthase [Coenz 98.7 8.5E-08 1.8E-12 92.1 10.2 197 235-469 84-288 (380)
138 COG0535 Predicted Fe-S oxidore 98.6 1.3E-05 2.8E-10 82.9 24.4 179 233-451 18-198 (347)
139 COG0820 Predicted Fe-S-cluster 98.6 9E-06 1.9E-10 83.2 20.5 192 231-458 98-301 (349)
140 TIGR03278 methan_mark_10 putat 98.5 1.5E-05 3.1E-10 84.4 20.2 165 247-451 38-208 (404)
141 cd02065 B12-binding_like B12 b 98.4 3.9E-07 8.4E-12 80.3 6.6 87 93-202 16-116 (125)
142 PRK13745 anaerobic sulfatase-m 98.4 1.7E-05 3.6E-10 84.8 19.8 179 234-451 13-206 (412)
143 COG4277 Predicted DNA-binding 98.4 3.5E-06 7.6E-11 83.1 11.7 209 240-483 60-287 (404)
144 PRK13758 anaerobic sulfatase-m 98.3 0.00013 2.8E-09 76.8 22.7 171 238-447 9-193 (370)
145 COG1509 KamA Lysine 2,3-aminom 98.3 8.9E-05 1.9E-09 75.7 19.9 182 231-458 108-299 (369)
146 COG1533 SplB DNA repair photol 98.2 8.6E-05 1.9E-09 75.5 18.1 186 236-453 31-226 (297)
147 TIGR02494 PFLE_PFLC glycyl-rad 98.2 0.0001 2.2E-09 75.1 18.0 153 263-456 106-264 (295)
148 COG0641 AslB Arylsulfatase reg 98.2 0.00019 4E-09 75.5 20.0 197 244-480 18-223 (378)
149 KOG2535 RNA polymerase II elon 98.1 5.6E-05 1.2E-09 76.0 14.6 109 349-461 229-340 (554)
150 COG1180 PflA Pyruvate-formate 98.0 0.00042 9.1E-09 69.4 18.9 175 235-449 36-214 (260)
151 TIGR03365 Bsubt_queE 7-cyano-7 98.0 0.00025 5.5E-09 70.1 17.2 150 232-438 21-175 (238)
152 COG1625 Fe-S oxidoreductase, r 97.9 0.00022 4.7E-09 74.2 14.0 152 327-488 95-249 (414)
153 COG1313 PflX Uncharacterized F 97.8 0.00095 2.1E-08 66.2 15.4 162 242-446 126-291 (335)
154 TIGR03279 cyano_FeS_chp putati 97.8 0.0017 3.6E-08 68.8 18.2 81 353-438 125-206 (433)
155 cd02067 B12-binding B12 bindin 97.1 0.0032 7E-08 55.0 9.1 81 93-192 16-110 (119)
156 COG2108 Uncharacterized conser 97.1 0.014 3E-07 59.1 14.4 165 236-450 30-203 (353)
157 PRK10076 pyruvate formate lyas 96.9 0.12 2.5E-06 50.3 18.6 151 261-451 17-170 (213)
158 TIGR02826 RNR_activ_nrdG3 anae 96.8 0.0039 8.3E-08 57.0 7.6 53 236-289 17-71 (147)
159 PF13394 Fer4_14: 4Fe-4S singl 96.8 0.0025 5.5E-08 55.5 6.0 79 241-348 5-87 (119)
160 COG5014 Predicted Fe-S oxidore 96.8 0.045 9.7E-07 50.6 14.0 156 241-438 48-212 (228)
161 cd03174 DRE_TIM_metallolyase D 96.8 0.085 1.8E-06 52.5 17.2 151 260-446 13-166 (265)
162 TIGR00640 acid_CoA_mut_C methy 96.7 0.043 9.3E-07 49.2 12.8 108 77-205 3-124 (132)
163 PF13353 Fer4_12: 4Fe-4S singl 96.4 0.006 1.3E-07 54.5 5.7 71 241-340 12-84 (139)
164 cd02072 Glm_B12_BD B12 binding 96.3 0.039 8.5E-07 49.1 10.0 91 93-204 16-126 (128)
165 COG0602 NrdG Organic radical a 95.9 0.021 4.5E-07 55.5 6.9 57 232-290 21-82 (212)
166 PRK02261 methylaspartate mutas 95.7 0.31 6.7E-06 43.9 13.4 109 77-204 4-130 (137)
167 TIGR01501 MthylAspMutase methy 95.5 0.16 3.5E-06 45.6 10.5 93 93-205 18-129 (134)
168 cd02070 corrinoid_protein_B12- 95.0 0.085 1.8E-06 50.7 7.8 79 93-190 99-190 (201)
169 TIGR02491 NrdG anaerobic ribon 95.0 0.18 3.9E-06 46.3 9.7 48 241-290 22-74 (154)
170 KOG2876 Molybdenum cofactor bi 95.0 0.025 5.4E-07 55.6 3.9 186 236-466 13-205 (323)
171 PF01938 TRAM: TRAM domain; I 94.9 0.027 5.9E-07 43.1 3.3 32 490-524 2-33 (61)
172 cd07948 DRE_TIM_HCS Saccharomy 94.7 1.6 3.4E-05 43.9 16.2 142 260-445 16-160 (262)
173 PRK11121 nrdG anaerobic ribonu 94.4 0.29 6.2E-06 45.0 9.3 16 242-257 24-39 (154)
174 PLN02746 hydroxymethylglutaryl 94.0 2.7 5.8E-05 43.9 16.5 147 260-445 62-216 (347)
175 COG2185 Sbm Methylmalonyl-CoA 93.6 1.1 2.5E-05 40.4 11.1 108 76-204 12-133 (143)
176 PRK05692 hydroxymethylglutaryl 93.4 4.3 9.4E-05 41.2 16.5 148 260-445 20-174 (287)
177 cd02071 MM_CoA_mut_B12_BD meth 93.3 0.54 1.2E-05 41.3 8.7 82 93-192 16-110 (122)
178 cd07941 DRE_TIM_LeuA3 Desulfob 93.0 6.3 0.00014 39.7 17.0 147 261-445 15-170 (273)
179 cd07938 DRE_TIM_HMGL 3-hydroxy 92.8 6 0.00013 39.9 16.5 148 260-445 14-168 (274)
180 cd07944 DRE_TIM_HOA_like 4-hyd 92.6 9.1 0.0002 38.4 17.4 141 261-445 15-157 (266)
181 PF08497 Radical_SAM_N: Radica 92.4 0.57 1.2E-05 47.0 8.3 50 159-209 124-185 (302)
182 cd07939 DRE_TIM_NifV Streptomy 92.1 7.9 0.00017 38.6 16.4 141 261-445 15-158 (259)
183 PRK11858 aksA trans-homoaconit 91.3 10 0.00022 40.2 16.8 142 261-445 21-164 (378)
184 PRK09426 methylmalonyl-CoA mut 91.2 2.8 6E-05 48.1 13.2 109 76-204 582-703 (714)
185 cd07937 DRE_TIM_PC_TC_5S Pyruv 91.1 8.6 0.00019 38.8 15.5 140 262-445 17-168 (275)
186 PRK08091 ribulose-phosphate 3- 90.7 18 0.00039 35.6 16.6 133 261-455 20-154 (228)
187 PRK08195 4-hyroxy-2-oxovalerat 90.6 18 0.0004 37.6 17.7 143 261-445 20-163 (337)
188 TIGR03217 4OH_2_O_val_ald 4-hy 90.3 20 0.00044 37.2 17.6 143 261-445 19-162 (333)
189 TIGR02090 LEU1_arch isopropylm 90.3 15 0.00034 38.5 17.0 143 261-446 17-161 (363)
190 TIGR02660 nifV_homocitr homoci 89.5 11 0.00023 39.8 15.1 141 261-445 18-161 (365)
191 PF00682 HMGL-like: HMGL-like 88.8 2.6 5.6E-05 41.2 9.4 145 262-446 10-157 (237)
192 cd07945 DRE_TIM_CMS Leptospira 88.7 15 0.00031 37.3 14.9 86 356-445 77-166 (280)
193 cd07940 DRE_TIM_IPMS 2-isoprop 88.5 29 0.00062 34.7 17.1 141 261-445 15-162 (268)
194 cd07943 DRE_TIM_HOA 4-hydroxy- 87.8 31 0.00067 34.4 17.2 141 261-445 17-160 (263)
195 cd00452 KDPG_aldolase KDPG and 87.4 20 0.00044 33.8 14.2 120 260-451 10-129 (190)
196 TIGR02370 pyl_corrinoid methyl 87.1 1.7 3.8E-05 41.5 6.7 78 93-189 101-191 (197)
197 PF04016 DUF364: Domain of unk 84.8 1.2 2.6E-05 40.7 4.1 72 113-208 61-132 (147)
198 cd02069 methionine_synthase_B1 83.3 3 6.4E-05 40.5 6.3 63 93-172 105-180 (213)
199 PRK12344 putative alpha-isopro 83.1 45 0.00098 37.0 16.2 146 261-444 22-176 (524)
200 PRK00915 2-isopropylmalate syn 82.7 34 0.00074 37.8 15.1 146 260-445 20-168 (513)
201 PRK07535 methyltetrahydrofolat 82.7 22 0.00047 35.7 12.4 139 260-438 19-183 (261)
202 PRK09389 (R)-citramalate synth 81.6 70 0.0015 35.1 16.9 143 260-445 18-162 (488)
203 PF01261 AP_endonuc_2: Xylose 81.2 46 0.001 30.9 13.9 78 359-447 1-92 (213)
204 PRK14041 oxaloacetate decarbox 78.3 76 0.0016 34.7 15.6 139 262-445 21-172 (467)
205 PRK14816 NADH dehydrogenase su 77.9 8.2 0.00018 36.4 7.0 45 79-128 43-94 (182)
206 PRK14818 NADH dehydrogenase su 77.8 8.7 0.00019 35.8 7.1 53 79-135 33-90 (173)
207 PRK14813 NADH dehydrogenase su 76.8 2.8 6.1E-05 39.6 3.6 38 99-138 53-90 (189)
208 cd00423 Pterin_binding Pterin 76.5 75 0.0016 31.6 14.1 147 260-438 18-194 (258)
209 PRK14040 oxaloacetate decarbox 75.0 99 0.0022 34.9 15.8 140 262-445 23-174 (593)
210 PF00072 Response_reg: Respons 74.4 34 0.00073 28.2 9.6 89 89-197 7-107 (112)
211 COG2355 Zn-dependent dipeptida 74.3 46 0.00099 34.3 11.9 28 264-291 106-133 (313)
212 PF06180 CbiK: Cobalt chelatas 73.2 22 0.00048 35.7 9.2 156 264-469 56-226 (262)
213 PRK09282 pyruvate carboxylase 72.9 1.7E+02 0.0037 33.0 21.6 123 263-439 151-274 (592)
214 TIGR01108 oadA oxaloacetate de 72.4 1.7E+02 0.0038 32.9 16.9 140 262-445 17-168 (582)
215 TIGR00977 LeuA_rel 2-isopropyl 71.6 1.7E+02 0.0037 32.5 17.3 148 260-446 17-174 (526)
216 PRK09282 pyruvate carboxylase 71.4 1.8E+02 0.0038 32.9 16.8 139 262-444 22-172 (592)
217 cd01301 rDP_like renal dipepti 70.6 52 0.0011 33.8 11.5 25 269-293 116-140 (309)
218 TIGR02082 metH 5-methyltetrahy 70.1 13 0.00028 45.1 7.9 63 93-173 749-825 (1178)
219 PRK08005 epimerase; Validated 69.8 32 0.00069 33.3 9.2 133 262-457 9-144 (210)
220 PRK08883 ribulose-phosphate 3- 69.7 28 0.0006 34.0 8.9 133 262-457 8-144 (220)
221 PRK14057 epimerase; Provisiona 69.6 1.3E+02 0.0027 30.2 16.8 134 261-456 27-169 (254)
222 PRK12330 oxaloacetate decarbox 69.2 1.9E+02 0.004 32.0 22.1 82 264-379 153-236 (499)
223 PTZ00170 D-ribulose-5-phosphat 68.7 80 0.0017 30.9 12.0 118 261-431 14-133 (228)
224 PRK15452 putative protease; Pr 68.6 29 0.00063 37.6 9.5 86 355-448 12-98 (443)
225 PRK08745 ribulose-phosphate 3- 68.2 37 0.0008 33.2 9.4 134 261-457 11-148 (223)
226 PRK12581 oxaloacetate decarbox 67.9 1.9E+02 0.0041 31.6 20.9 243 84-438 28-282 (468)
227 cd02072 Glm_B12_BD B12 binding 67.4 32 0.0007 30.6 8.0 58 391-457 62-120 (128)
228 PLN02746 hydroxymethylglutaryl 67.0 1.2E+02 0.0026 31.8 13.4 97 233-378 177-276 (347)
229 PLN03228 methylthioalkylmalate 66.6 1.5E+02 0.0032 32.8 14.5 144 260-445 100-258 (503)
230 cd00537 MTHFR Methylenetetrahy 66.1 1.3E+02 0.0027 30.2 13.1 129 261-427 68-203 (274)
231 PRK14815 NADH dehydrogenase su 66.0 8.3 0.00018 36.3 4.1 47 79-128 35-86 (183)
232 TIGR01501 MthylAspMutase methy 65.9 34 0.00073 30.7 7.9 83 353-457 39-122 (134)
233 PRK12331 oxaloacetate decarbox 65.9 2E+02 0.0044 31.2 16.9 140 262-445 22-173 (448)
234 PF04481 DUF561: Protein of un 65.9 1.1E+02 0.0023 30.0 11.5 91 341-445 61-151 (242)
235 PRK11613 folP dihydropteroate 65.9 1.6E+02 0.0034 30.0 13.6 146 261-438 33-207 (282)
236 TIGR00973 leuA_bact 2-isopropy 65.6 1.6E+02 0.0035 32.4 14.7 146 260-445 17-165 (494)
237 COG0685 MetF 5,10-methylenetet 64.5 1.2E+02 0.0027 30.8 12.7 107 261-406 87-200 (291)
238 TIGR00262 trpA tryptophan synt 63.2 61 0.0013 32.3 10.1 87 355-444 26-145 (256)
239 PRK14819 NADH dehydrogenase su 63.2 25 0.00054 34.9 7.0 50 79-131 33-87 (264)
240 TIGR00676 fadh2 5,10-methylene 63.0 1.3E+02 0.0029 30.1 12.6 134 261-436 68-206 (272)
241 PRK13585 1-(5-phosphoribosyl)- 62.4 1.4E+02 0.0031 28.9 12.6 134 267-449 33-172 (241)
242 TIGR03128 RuMP_HxlA 3-hexulose 62.4 1.1E+02 0.0023 29.0 11.3 92 330-445 41-132 (206)
243 PRK13210 putative L-xylulose 5 62.4 60 0.0013 32.2 10.1 83 356-445 19-113 (284)
244 KOG2492 CDK5 activator-binding 62.3 12 0.00026 39.5 4.9 48 71-128 389-437 (552)
245 cd03413 CbiK_C Anaerobic cobal 62.3 69 0.0015 27.2 8.9 64 393-462 15-78 (103)
246 PRK07114 keto-hydroxyglutarate 62.1 1.1E+02 0.0025 29.8 11.4 101 260-400 21-129 (222)
247 PRK07455 keto-hydroxyglutarate 62.0 1.4E+02 0.0031 28.1 13.5 116 260-447 18-133 (187)
248 COG1964 Predicted Fe-S oxidore 61.9 2.1E+02 0.0046 30.9 14.0 155 251-449 78-241 (475)
249 PF01081 Aldolase: KDPG and KH 60.7 64 0.0014 30.9 9.2 86 260-389 14-99 (196)
250 COG0119 LeuA Isopropylmalate/h 60.6 2.3E+02 0.0051 30.3 14.4 145 260-445 18-165 (409)
251 TIGR00696 wecB_tagA_cpsF bacte 59.5 94 0.002 29.2 10.1 74 353-447 35-108 (177)
252 TIGR00542 hxl6Piso_put hexulos 59.3 88 0.0019 31.2 10.6 83 356-445 19-113 (279)
253 PRK06015 keto-hydroxyglutarate 59.3 1.7E+02 0.0037 28.2 11.9 85 260-388 10-94 (201)
254 PRK14040 oxaloacetate decarbox 59.1 3.1E+02 0.0067 31.0 18.5 204 84-380 20-235 (593)
255 PRK06411 NADH dehydrogenase su 59.1 27 0.00058 33.1 6.2 46 79-128 37-87 (183)
256 PF03808 Glyco_tran_WecB: Glyc 58.4 40 0.00086 31.4 7.3 81 350-450 32-112 (172)
257 PRK13209 L-xylulose 5-phosphat 57.0 1.2E+02 0.0026 30.2 11.1 83 356-445 24-118 (283)
258 TIGR01496 DHPS dihydropteroate 56.8 2.1E+02 0.0046 28.4 13.9 151 260-439 17-193 (257)
259 TIGR01957 nuoB_fam NADH-quinon 56.3 13 0.00028 33.9 3.5 45 79-129 19-71 (145)
260 PF00809 Pterin_bind: Pterin b 56.3 31 0.00066 33.3 6.4 150 262-438 15-191 (210)
261 TIGR00284 dihydropteroate synt 55.0 1.2E+02 0.0025 33.6 11.2 214 163-436 63-304 (499)
262 cd04731 HisF The cyclase subun 54.7 2.1E+02 0.0046 27.8 12.6 136 265-449 26-172 (243)
263 cd07947 DRE_TIM_Re_CS Clostrid 54.6 2.4E+02 0.0053 28.5 15.6 134 264-445 19-169 (279)
264 COG2014 Uncharacterized conser 53.9 26 0.00056 33.9 5.2 67 114-204 164-230 (250)
265 COG5012 Predicted cobalamin bi 53.8 15 0.00034 35.7 3.7 29 93-122 121-163 (227)
266 cd03416 CbiX_SirB_N Sirohydroc 53.4 59 0.0013 27.0 7.0 69 393-469 15-83 (101)
267 cd00739 DHPS DHPS subgroup of 53.3 2.4E+02 0.0053 28.1 12.5 148 261-438 19-194 (257)
268 PF03851 UvdE: UV-endonuclease 53.3 85 0.0018 31.7 9.1 126 263-416 42-210 (275)
269 PF01244 Peptidase_M19: Membra 53.3 33 0.00071 35.5 6.4 85 349-440 209-301 (320)
270 PRK05718 keto-hydroxyglutarate 52.8 1.3E+02 0.0027 29.2 10.0 86 260-389 21-106 (212)
271 PLN02321 2-isopropylmalate syn 51.0 3.5E+02 0.0076 30.8 14.4 27 260-286 102-128 (632)
272 PRK09722 allulose-6-phosphate 50.6 1E+02 0.0022 30.3 9.1 132 262-456 11-145 (229)
273 PF00834 Ribul_P_3_epim: Ribul 50.3 86 0.0019 30.1 8.4 163 262-502 8-173 (201)
274 CHL00023 ndhK NADH dehydrogena 50.3 36 0.00078 33.1 5.6 46 79-128 34-84 (225)
275 cd03409 Chelatase_Class_II Cla 50.1 44 0.00094 27.5 5.6 62 393-458 16-77 (101)
276 COG0826 Collagenase and relate 49.8 92 0.002 32.6 9.1 75 368-447 26-100 (347)
277 TIGR01303 IMP_DH_rel_1 IMP deh 49.7 1.6E+02 0.0035 32.2 11.3 123 266-433 224-348 (475)
278 TIGR00695 uxuA mannonate dehyd 49.5 63 0.0014 34.4 7.8 16 391-406 40-55 (394)
279 TIGR01182 eda Entner-Doudoroff 49.5 2.5E+02 0.0054 27.1 12.0 84 260-387 14-97 (204)
280 PRK14820 NADH dehydrogenase su 49.1 73 0.0016 30.1 7.3 42 83-129 41-87 (180)
281 PRK00957 methionine synthase; 48.8 1.7E+02 0.0038 29.6 10.9 22 265-286 143-164 (305)
282 PF00977 His_biosynth: Histidi 48.1 1.4E+02 0.0031 29.0 9.7 141 266-456 29-176 (229)
283 PF05853 DUF849: Prokaryotic p 48.0 2.9E+02 0.0064 27.7 12.2 149 261-437 21-196 (272)
284 PRK12331 oxaloacetate decarbox 48.0 3E+02 0.0065 29.9 12.9 122 263-438 151-273 (448)
285 PRK09490 metH B12-dependent me 47.5 38 0.00083 41.3 6.5 63 93-173 768-844 (1229)
286 PRK14814 NADH dehydrogenase su 47.4 52 0.0011 31.2 6.1 45 79-128 35-86 (186)
287 COG3925 N-terminal domain of t 47.2 58 0.0012 27.3 5.5 59 93-180 20-79 (103)
288 PRK02261 methylaspartate mutas 46.8 84 0.0018 28.1 7.2 81 354-457 42-124 (137)
289 cd06556 ICL_KPHMT Members of t 46.5 1.9E+02 0.0041 28.6 10.3 85 354-445 20-108 (240)
290 cd07945 DRE_TIM_CMS Leptospira 46.4 3.1E+02 0.0067 27.7 12.1 79 264-378 145-226 (280)
291 PRK03906 mannonate dehydratase 45.9 60 0.0013 34.5 7.0 49 356-414 13-61 (385)
292 TIGR01108 oadA oxaloacetate de 45.7 4.9E+02 0.011 29.3 22.4 82 263-379 146-228 (582)
293 COG0036 Rpe Pentose-5-phosphat 45.6 91 0.002 30.4 7.6 133 261-456 11-146 (220)
294 COG3260 Ni,Fe-hydrogenase III 45.5 45 0.00098 30.0 5.0 39 81-128 24-62 (148)
295 smart00642 Aamy Alpha-amylase 45.2 47 0.001 30.8 5.5 31 391-423 67-97 (166)
296 cd00019 AP2Ec AP endonuclease 45.2 3.2E+02 0.0069 27.0 12.7 84 356-445 13-104 (279)
297 cd07938 DRE_TIM_HMGL 3-hydroxy 45.2 2.8E+02 0.0061 27.9 11.5 96 234-377 130-227 (274)
298 COG0159 TrpA Tryptophan syntha 45.0 3.4E+02 0.0074 27.3 12.1 81 328-410 4-95 (265)
299 PRK14582 pgaB outer membrane N 44.6 88 0.0019 35.8 8.5 103 353-458 254-366 (671)
300 PRK05692 hydroxymethylglutaryl 44.6 3.5E+02 0.0076 27.4 12.6 80 263-377 152-233 (287)
301 cd06533 Glyco_transf_WecG_TagA 44.4 1.3E+02 0.0029 27.8 8.5 76 352-447 32-107 (171)
302 PRK04326 methionine synthase; 44.0 3.7E+02 0.0081 27.5 12.8 103 355-482 219-324 (330)
303 cd07937 DRE_TIM_PC_TC_5S Pyruv 43.3 3.3E+02 0.0072 27.3 11.8 79 263-377 146-226 (275)
304 cd04732 HisA HisA. Phosphorib 43.1 3E+02 0.0065 26.4 11.2 133 266-447 29-167 (234)
305 KOG1160 Fe-S oxidoreductase [E 41.6 3.1E+02 0.0067 29.7 11.2 73 369-445 403-479 (601)
306 KOG3799 Rab3 effector RIM1 and 41.4 10 0.00022 33.7 0.4 17 239-255 75-91 (169)
307 PRK07028 bifunctional hexulose 41.3 3.6E+02 0.0078 28.9 12.4 80 261-377 11-90 (430)
308 PRK13111 trpA tryptophan synth 41.2 1.5E+02 0.0033 29.6 8.8 85 355-444 28-147 (258)
309 PF02219 MTHFR: Methylenetetra 40.7 2.3E+02 0.0051 28.5 10.3 122 262-417 81-208 (287)
310 TIGR00677 fadh2_euk methylenet 40.4 4E+02 0.0088 26.9 13.7 126 262-426 70-203 (281)
311 cd07939 DRE_TIM_NifV Streptomy 40.4 2.9E+02 0.0062 27.3 10.7 80 263-377 136-216 (259)
312 PF00834 Ribul_P_3_epim: Ribul 40.2 1.1E+02 0.0023 29.5 7.3 97 78-191 83-194 (201)
313 PRK07807 inosine 5-monophospha 40.1 3E+02 0.0065 30.2 11.5 123 266-433 226-350 (479)
314 PRK09958 DNA-binding transcrip 39.8 2.8E+02 0.0061 25.2 10.1 95 92-206 12-118 (204)
315 CHL00073 chlN photochlorophyll 39.3 12 0.00026 40.7 0.6 75 81-178 42-116 (457)
316 TIGR00970 leuA_yeast 2-isoprop 39.0 6E+02 0.013 28.5 15.4 143 260-440 42-198 (564)
317 PRK13292 trifunctional NADH de 38.9 68 0.0015 37.4 6.6 49 79-130 24-77 (788)
318 PRK00923 sirohydrochlorin coba 38.8 1.7E+02 0.0038 25.3 7.9 68 393-469 17-85 (126)
319 PLN02274 inosine-5'-monophosph 38.7 45 0.00098 36.8 5.0 58 114-191 260-317 (505)
320 PLN02540 methylenetetrahydrofo 38.3 6.2E+02 0.013 28.4 15.5 111 261-406 68-194 (565)
321 PLN02757 sirohydrochlorine fer 38.3 79 0.0017 29.0 5.8 70 393-470 29-98 (154)
322 TIGR00238 KamA family protein. 38.0 3.1E+02 0.0067 28.4 10.8 104 326-443 145-254 (331)
323 PRK05904 coproporphyrinogen II 38.0 3.3E+02 0.0071 28.5 11.1 22 270-291 104-125 (353)
324 PRK12330 oxaloacetate decarbox 38.0 5.9E+02 0.013 28.1 16.0 25 263-287 24-48 (499)
325 cd07943 DRE_TIM_HOA 4-hydroxy- 38.0 2.2E+02 0.0048 28.2 9.5 80 263-377 138-219 (263)
326 PRK14042 pyruvate carboxylase 37.9 6.5E+02 0.014 28.5 21.0 231 84-406 19-273 (596)
327 PRK10840 transcriptional regul 37.7 1.5E+02 0.0032 28.0 7.9 50 159-209 78-128 (216)
328 PF00682 HMGL-like: HMGL-like 37.6 2E+02 0.0043 27.8 8.9 82 263-378 134-216 (237)
329 COG0826 Collagenase and relate 37.5 1.5E+02 0.0033 31.0 8.4 70 335-422 107-178 (347)
330 PRK14847 hypothetical protein; 37.0 3E+02 0.0066 28.6 10.4 124 357-505 58-183 (333)
331 COG0745 OmpR Response regulato 37.0 3.7E+02 0.008 26.2 10.7 90 93-205 13-113 (229)
332 PTZ00314 inosine-5'-monophosph 36.8 5.1E+02 0.011 28.5 12.8 122 264-433 239-364 (495)
333 cd03412 CbiK_N Anaerobic cobal 36.6 78 0.0017 27.9 5.3 62 394-455 17-85 (127)
334 cd07942 DRE_TIM_LeuA Mycobacte 35.8 4.8E+02 0.01 26.4 16.0 139 260-438 17-168 (284)
335 COG5016 Pyruvate/oxaloacetate 35.7 5.9E+02 0.013 27.4 18.1 133 260-444 92-229 (472)
336 PF01136 Peptidase_U32: Peptid 35.6 2.4E+02 0.0051 27.2 9.1 69 266-378 2-70 (233)
337 PRK09140 2-dehydro-3-deoxy-6-p 35.4 4.1E+02 0.0088 25.5 14.7 85 260-388 16-101 (206)
338 cd04724 Tryptophan_synthase_al 35.3 4.4E+02 0.0095 25.8 13.2 149 263-457 11-168 (242)
339 PF00478 IMPDH: IMP dehydrogen 35.3 5.5E+02 0.012 27.0 12.1 119 269-433 110-231 (352)
340 COG3623 SgaU Putative L-xylulo 34.6 1.6E+02 0.0035 29.1 7.3 93 351-450 15-120 (287)
341 PRK06843 inosine 5-monophospha 34.3 5.6E+02 0.012 27.5 12.1 122 267-433 153-276 (404)
342 TIGR00736 nifR3_rel_arch TIM-b 33.9 4.7E+02 0.01 25.7 10.8 92 356-454 80-174 (231)
343 COG2513 PrpB PEP phosphonomuta 33.9 4E+02 0.0086 27.2 10.3 88 351-447 23-114 (289)
344 cd02801 DUS_like_FMN Dihydrour 33.7 3.8E+02 0.0082 25.6 10.2 82 358-447 72-159 (231)
345 PRK09997 hydroxypyruvate isome 33.6 4.6E+02 0.01 25.6 11.7 25 260-287 12-36 (258)
346 PRK08446 coproporphyrinogen II 33.4 4.5E+02 0.0098 27.3 11.3 22 270-291 99-120 (350)
347 cd04724 Tryptophan_synthase_al 33.3 4.4E+02 0.0095 25.8 10.6 25 421-445 111-135 (242)
348 PLN02433 uroporphyrinogen deca 33.0 5.7E+02 0.012 26.4 12.6 41 328-375 219-260 (345)
349 PRK09432 metF 5,10-methylenete 32.9 5.4E+02 0.012 26.2 14.1 30 261-290 92-121 (296)
350 cd02803 OYE_like_FMN_family Ol 32.9 2.6E+02 0.0056 28.5 9.3 54 396-449 194-251 (327)
351 cd00950 DHDPS Dihydrodipicolin 32.4 3.6E+02 0.0078 26.9 10.1 14 393-406 81-94 (284)
352 COG2204 AtoC Response regulato 32.2 2.5E+02 0.0055 30.6 9.2 92 93-204 17-119 (464)
353 cd03319 L-Ala-DL-Glu_epimerase 32.1 5.5E+02 0.012 26.0 12.9 22 264-285 134-155 (316)
354 TIGR03217 4OH_2_O_val_ald 4-hy 32.1 2.9E+02 0.0063 28.7 9.5 82 262-377 139-222 (333)
355 PRK08645 bifunctional homocyst 31.9 6.1E+02 0.013 28.7 12.7 29 261-289 391-419 (612)
356 TIGR00007 phosphoribosylformim 31.9 4.6E+02 0.01 25.1 13.1 134 267-449 29-168 (230)
357 PRK08883 ribulose-phosphate 3- 31.9 1.6E+02 0.0034 28.7 7.0 88 92-193 94-197 (220)
358 PRK08195 4-hyroxy-2-oxovalerat 31.4 2.9E+02 0.0063 28.7 9.4 81 263-377 141-223 (337)
359 PRK13347 coproporphyrinogen II 31.4 3.4E+02 0.0073 29.4 10.2 22 270-291 153-174 (453)
360 TIGR03278 methan_mark_10 putat 31.1 25 0.00054 37.6 1.4 17 241-257 6-22 (404)
361 PRK12999 pyruvate carboxylase; 30.9 6.6E+02 0.014 30.9 13.4 171 264-485 624-812 (1146)
362 PRK03739 2-isopropylmalate syn 30.3 7.2E+02 0.016 27.8 12.7 140 260-437 46-196 (552)
363 TIGR03787 marine_sort_RR prote 30.2 4.5E+02 0.0097 24.3 10.2 96 91-205 11-118 (227)
364 PLN02495 oxidoreductase, actin 30.0 1.6E+02 0.0035 31.3 7.2 58 391-451 95-152 (385)
365 cd02810 DHOD_DHPD_FMN Dihydroo 29.8 2.4E+02 0.0052 28.2 8.3 51 392-447 146-197 (289)
366 PRK10336 DNA-binding transcrip 29.6 4.4E+02 0.0095 24.1 10.5 95 90-204 10-115 (219)
367 cd00408 DHDPS-like Dihydrodipi 29.4 3.8E+02 0.0081 26.7 9.6 14 393-406 78-91 (281)
368 PF14386 DUF4417: Domain of un 29.0 2.7E+02 0.0059 26.7 8.0 43 89-132 95-152 (200)
369 cd07941 DRE_TIM_LeuA3 Desulfob 29.0 3.8E+02 0.0082 26.8 9.5 79 264-377 149-229 (273)
370 PRK14817 NADH dehydrogenase su 28.9 1.1E+02 0.0025 28.8 5.2 47 79-128 37-88 (181)
371 PRK09856 fructoselysine 3-epim 28.8 4.6E+02 0.0099 25.7 10.1 45 394-440 129-173 (275)
372 cd00218 GlcAT-I Beta1,3-glucur 28.8 3.7E+02 0.0081 26.3 8.9 74 326-406 17-90 (223)
373 PRK08005 epimerase; Validated 28.7 2.1E+02 0.0045 27.7 7.2 102 327-457 14-120 (210)
374 PRK13587 1-(5-phosphoribosyl)- 28.3 4.2E+02 0.0092 25.9 9.5 133 269-454 34-175 (234)
375 PRK09856 fructoselysine 3-epim 28.3 5.7E+02 0.012 25.0 11.4 83 355-446 15-110 (275)
376 cd03174 DRE_TIM_metallolyase D 28.2 5.6E+02 0.012 24.8 12.9 103 262-406 142-245 (265)
377 PRK13586 1-(5-phosphoribosyl)- 28.1 5.8E+02 0.012 25.0 12.6 137 267-454 31-173 (232)
378 PRK14057 epimerase; Provisiona 27.9 2.3E+02 0.0049 28.4 7.4 55 397-458 88-147 (254)
379 TIGR00642 mmCoA_mut_beta methy 27.9 4.5E+02 0.0098 29.9 10.6 94 76-191 494-602 (619)
380 PRK06552 keto-hydroxyglutarate 27.8 5.6E+02 0.012 24.7 12.0 86 260-389 19-107 (213)
381 KOG2550 IMP dehydrogenase/GMP 27.2 2.8E+02 0.006 29.8 8.1 104 270-415 254-360 (503)
382 PRK00278 trpC indole-3-glycero 27.2 1.7E+02 0.0037 29.1 6.6 95 81-194 136-243 (260)
383 TIGR01463 mtaA_cmuA methyltran 27.2 6.9E+02 0.015 25.5 13.9 41 328-375 222-262 (340)
384 PF08902 DUF1848: Domain of un 27.1 6.6E+02 0.014 25.3 12.3 30 262-293 55-84 (266)
385 PRK00115 hemE uroporphyrinogen 27.1 7.1E+02 0.015 25.7 12.8 41 328-375 226-267 (346)
386 PF01729 QRPTase_C: Quinolinat 27.1 2.7E+02 0.0057 26.0 7.4 45 326-376 112-156 (169)
387 PRK07107 inosine 5-monophospha 27.0 7.7E+02 0.017 27.2 12.1 105 261-404 236-343 (502)
388 KOG3111 D-ribulose-5-phosphate 27.0 5.8E+02 0.013 24.6 13.4 134 261-454 12-147 (224)
389 COG0036 Rpe Pentose-5-phosphat 26.9 4.4E+02 0.0095 25.8 9.0 23 266-288 71-93 (220)
390 CHL00200 trpA tryptophan synth 26.7 2.3E+02 0.0049 28.4 7.3 88 355-445 31-150 (263)
391 TIGR03822 AblA_like_2 lysine-2 26.7 7.1E+02 0.015 25.5 11.6 100 329-438 187-293 (321)
392 PRK09722 allulose-6-phosphate 26.6 5.3E+02 0.012 25.3 9.7 109 79-204 86-215 (229)
393 PRK14041 oxaloacetate decarbox 26.3 8.8E+02 0.019 26.5 23.1 123 263-439 150-273 (467)
394 cd00635 PLPDE_III_YBL036c_like 26.3 3.1E+02 0.0067 26.3 8.1 62 371-438 118-184 (222)
395 PRK03170 dihydrodipicolinate s 26.1 4.8E+02 0.01 26.1 9.8 14 393-406 82-95 (292)
396 PRK10100 DNA-binding transcrip 25.9 3.4E+02 0.0074 26.1 8.2 76 114-209 52-129 (216)
397 PRK14024 phosphoribosyl isomer 25.7 6.3E+02 0.014 24.6 15.9 130 267-447 33-167 (241)
398 PF09370 TIM-br_sig_trns: TIM- 25.7 3.1E+02 0.0068 27.6 7.9 75 353-435 157-237 (268)
399 KOG3111 D-ribulose-5-phosphate 25.7 3.4E+02 0.0073 26.1 7.6 97 79-194 91-200 (224)
400 TIGR01302 IMP_dehydrog inosine 25.6 6.1E+02 0.013 27.4 11.0 129 266-445 223-355 (450)
401 PLN02361 alpha-amylase 25.6 1.6E+02 0.0034 31.5 6.3 28 391-420 73-100 (401)
402 PF13714 PEP_mutase: Phosphoen 25.6 6E+02 0.013 25.0 10.0 112 354-479 17-132 (238)
403 TIGR00262 trpA tryptophan synt 25.5 2.1E+02 0.0046 28.4 6.9 84 91-192 127-228 (256)
404 PF00478 IMPDH: IMP dehydrogen 25.3 1.7E+02 0.0037 30.7 6.3 61 113-194 119-180 (352)
405 PF01729 QRPTase_C: Quinolinat 25.2 2.6E+02 0.0056 26.0 6.9 56 113-191 99-155 (169)
406 TIGR03234 OH-pyruv-isom hydrox 24.9 6.4E+02 0.014 24.4 11.2 72 356-445 17-103 (254)
407 PRK10161 transcriptional regul 24.9 5.6E+02 0.012 23.7 10.4 98 90-205 12-120 (229)
408 cd03414 CbiX_SirB_C Sirohydroc 24.8 2.4E+02 0.0051 23.9 6.3 59 393-455 16-74 (117)
409 TIGR03572 WbuZ glycosyl amidat 24.7 6.3E+02 0.014 24.3 12.5 134 268-450 32-177 (232)
410 PF00331 Glyco_hydro_10: Glyco 24.7 5.7E+02 0.012 26.2 10.1 56 393-452 187-245 (320)
411 PF09370 TIM-br_sig_trns: TIM- 24.7 4.4E+02 0.0096 26.5 8.7 40 159-198 212-253 (268)
412 cd04823 ALAD_PBGS_aspartate_ri 24.6 2.7E+02 0.0059 28.7 7.3 28 261-288 49-76 (320)
413 PRK09836 DNA-binding transcrip 24.6 5.6E+02 0.012 23.7 10.3 94 90-203 10-114 (227)
414 PRK14847 hypothetical protein; 24.6 8.1E+02 0.018 25.5 11.3 27 260-286 48-74 (333)
415 PF01208 URO-D: Uroporphyrinog 24.6 2.9E+02 0.0063 28.3 8.0 42 327-375 221-263 (343)
416 PF14871 GHL6: Hypothetical gl 24.5 82 0.0018 28.1 3.3 61 356-420 3-68 (132)
417 cd07944 DRE_TIM_HOA_like 4-hyd 24.4 7.1E+02 0.015 24.8 12.7 81 263-377 135-217 (266)
418 cd04723 HisA_HisF Phosphoribos 24.4 6.6E+02 0.014 24.4 11.0 131 266-448 35-167 (233)
419 COG5587 Uncharacterized conser 24.4 81 0.0018 29.7 3.3 64 366-431 101-180 (228)
420 PRK01060 endonuclease IV; Prov 24.2 6.9E+02 0.015 24.5 13.5 84 355-446 14-109 (281)
421 PRK11083 DNA-binding response 24.1 5.6E+02 0.012 23.5 10.4 95 90-204 13-118 (228)
422 PRK12581 oxaloacetate decarbox 24.1 9.7E+02 0.021 26.2 15.8 79 350-444 102-181 (468)
423 TIGR02456 treS_nterm trehalose 24.1 1.9E+02 0.0042 32.1 6.9 40 391-432 73-112 (539)
424 PF00490 ALAD: Delta-aminolevu 24.0 2.2E+02 0.0049 29.4 6.6 28 261-288 52-79 (324)
425 PRK09249 coproporphyrinogen II 24.0 7E+02 0.015 26.9 11.1 22 270-291 152-173 (453)
426 PRK06843 inosine 5-monophospha 23.9 2E+02 0.0044 30.8 6.7 59 114-192 165-223 (404)
427 PRK08745 ribulose-phosphate 3- 23.6 2.6E+02 0.0056 27.3 6.9 88 92-193 98-201 (223)
428 PRK05660 HemN family oxidoredu 23.5 5.8E+02 0.013 26.8 10.1 22 270-291 108-129 (378)
429 cd04733 OYE_like_2_FMN Old yel 23.4 3E+02 0.0065 28.4 7.8 54 395-448 201-258 (338)
430 PRK09283 delta-aminolevulinic 23.4 2.8E+02 0.0061 28.6 7.2 28 261-288 54-81 (323)
431 PRK15447 putative protease; Pr 23.0 1.9E+02 0.0042 29.5 6.2 78 351-443 13-92 (301)
432 cd03412 CbiK_N Anaerobic cobal 22.9 5.1E+02 0.011 22.6 9.5 95 326-436 17-124 (127)
433 COG2875 CobM Precorrin-4 methy 22.8 4.2E+02 0.0091 26.3 7.9 34 261-294 57-90 (254)
434 PF03709 OKR_DC_1_N: Orn/Lys/A 22.8 3.6E+02 0.0079 23.1 7.0 72 91-180 4-88 (115)
435 TIGR01515 branching_enzym alph 22.8 1.6E+02 0.0035 33.3 6.1 30 392-423 204-233 (613)
436 TIGR00674 dapA dihydrodipicoli 22.8 6.8E+02 0.015 25.0 10.1 14 393-406 79-92 (285)
437 TIGR00542 hxl6Piso_put hexulos 22.7 5.5E+02 0.012 25.3 9.4 19 395-415 134-152 (279)
438 PLN02591 tryptophan synthase 22.6 6.5E+02 0.014 25.0 9.6 23 424-446 116-138 (250)
439 cd07940 DRE_TIM_IPMS 2-isoprop 22.3 5E+02 0.011 25.7 8.9 81 263-377 140-223 (268)
440 PRK07379 coproporphyrinogen II 22.2 7.9E+02 0.017 26.1 10.9 22 270-291 116-137 (400)
441 COG0800 Eda 2-keto-3-deoxy-6-p 22.2 7.3E+02 0.016 24.1 11.4 86 260-389 19-104 (211)
442 PF02324 Glyco_hydro_70: Glyco 22.0 1E+02 0.0023 35.0 4.1 31 391-423 644-678 (809)
443 PRK14114 1-(5-phosphoribosyl)- 22.0 7E+02 0.015 24.5 9.7 136 266-455 30-172 (241)
444 PRK09468 ompR osmolarity respo 21.9 6.6E+02 0.014 23.5 10.4 95 90-204 15-120 (239)
445 PLN02428 lipoic acid synthase 21.8 2.5E+02 0.0054 29.5 6.7 74 357-444 137-210 (349)
446 cd06808 PLPDE_III Type III Pyr 21.8 6.4E+02 0.014 23.3 12.6 48 370-423 107-156 (211)
447 PRK09989 hypothetical protein; 21.8 7.5E+02 0.016 24.1 10.7 153 247-445 1-175 (258)
448 PF07991 IlvN: Acetohydroxy ac 21.6 3.1E+02 0.0067 25.6 6.5 52 75-134 3-77 (165)
449 PRK10529 DNA-binding transcrip 21.1 6.5E+02 0.014 23.1 9.8 94 90-204 11-115 (225)
450 PRK08508 biotin synthase; Prov 21.0 4.2E+02 0.0091 26.6 8.1 21 392-412 73-93 (279)
451 PRK10816 DNA-binding transcrip 21.0 6.6E+02 0.014 23.1 10.2 93 92-204 12-115 (223)
452 TIGR02403 trehalose_treC alpha 21.0 2.3E+02 0.0051 31.5 6.8 39 392-432 73-111 (543)
453 PF03786 UxuA: D-mannonate deh 20.8 2.2E+02 0.0048 29.9 6.0 16 391-406 42-57 (351)
454 TIGR03820 lys_2_3_AblA lysine- 20.7 8.5E+02 0.019 26.2 10.6 45 330-378 207-252 (417)
455 COG1941 FrhG Coenzyme F420-red 20.6 2.7E+02 0.0059 27.5 6.2 52 84-140 15-73 (247)
456 PRK00311 panB 3-methyl-2-oxobu 20.4 7.4E+02 0.016 24.9 9.5 86 354-445 23-113 (264)
457 PRK08091 ribulose-phosphate 3- 20.3 2.5E+02 0.0054 27.6 6.0 88 92-193 104-209 (228)
458 PF04551 GcpE: GcpE protein; 20.3 2.4E+02 0.0051 29.6 6.1 74 92-190 248-322 (359)
459 TIGR01235 pyruv_carbox pyruvat 20.3 1.7E+03 0.036 27.5 17.0 143 327-487 653-812 (1143)
460 PRK07259 dihydroorotate dehydr 20.3 6.1E+02 0.013 25.5 9.2 55 392-451 75-130 (301)
461 PRK11173 two-component respons 20.2 7.2E+02 0.016 23.3 9.6 36 89-124 12-57 (237)
462 cd04824 eu_ALAD_PBGS_cysteine_ 20.1 4E+02 0.0086 27.5 7.5 28 261-288 46-73 (320)
No 1
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-106 Score=799.63 Aligned_cols=471 Identities=58% Similarity=0.955 Sum_probs=441.4
Q ss_pred CCCChhhhhhccccccCCCccCCCCCccCCCCCCc--ccCCCcc-EEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCC
Q 041524 37 DGPGLHHFIAQSSLTASQPLADLAPASEVSSATGS--EVHSQGR-IYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPE 113 (524)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~ 113 (524)
++-..|||++.++.++.+ ..+.+++++||+. ++.+++| ||++|||||||++|+|++|++|++.||-+ +++++
T Consensus 34 ~rl~~~~fl~~~~~~~~k----l~~~v~~~~~yL~~~dl~g~gRkv~~etYGCQMNvnD~Eiv~sIl~~~Gy~~-~~~~e 108 (552)
T KOG2492|consen 34 SRLQAQDFLKSASAPQEK----LSSEVEDPPPYLNSDDLLGNGRKVYLETYGCQMNVNDTEIVWSILKKSGYLR-SDKPE 108 (552)
T ss_pred HHHHhhhhhhccccchhh----ccccccCCccccCHHHhccCCcEEEEEEeeeeeccchHHHHHHHHHhcCccc-cCCcc
Confidence 455569999988876543 3468888899974 4778877 99999999999999999999999999987 78999
Q ss_pred CCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCC
Q 041524 114 NAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDA 193 (524)
Q Consensus 114 ~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~geg 193 (524)
+||||+++||+++++||+++|++|+.++++|. .|..+ .+.+|+|.||||+++++++|++...||+|+|+++
T Consensus 109 ~Advill~TCsiRe~AEq~iwnrL~~~ra~k~--------~~~~~-rpl~v~vLGCMAERlk~~iL~~~kmVdivaGPDa 179 (552)
T KOG2492|consen 109 EADVILLVTCSIREGAEQRIWNRLKLLRALKV--------NRPTS-RPLRVGVLGCMAERLKEKILEREKMVDIVAGPDA 179 (552)
T ss_pred cCcEEEEEEeeccccHHHHHHHHHHHHHHhhc--------cCccC-CCceEEeehhhHHHHHHHHhhhhhceeeeeCchh
Confidence 99999999999999999999999998866663 22233 3789999999999999999999999999999999
Q ss_pred cccHHHHHHHHhcCCCccccccccccccccCCCccccCCCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHH
Q 041524 194 YRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD 273 (524)
Q Consensus 194 e~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~ 273 (524)
|++||+||+..+.|+..+|++++++++|+|+.|+++.....+|||+|||||+|+|+||++|+++|+.|+||+++|++|++
T Consensus 180 YrDLPrll~~~~~g~~~in~~Lsldetyadv~pvr~~~~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~ 259 (552)
T KOG2492|consen 180 YRDLPRLLAVARGGQNGINVLLSLDETYADVQPVRVSSSSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVK 259 (552)
T ss_pred hhhhHHHHHHHhccCCceeEEEeccchhcccceeeccCccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCC
Q 041524 274 ELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKD 353 (524)
Q Consensus 274 ~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~ 353 (524)
.|.++|+|+++|+|||+|+|++.+..++..... ...++||+++||+|.++.+|+.||+.++...|+|+|||+++||++
T Consensus 260 ~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~--~~~~~GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKD 337 (552)
T KOG2492|consen 260 RLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVP--TNLSPGFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKD 337 (552)
T ss_pred HHhhcCceeeeeecccccccccchhhhhccCCc--cccCCCceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCC
Confidence 999999999999999999999987776644432 256799999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHH
Q 041524 354 FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLT 433 (524)
Q Consensus 354 ~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~ 433 (524)
+++|+|++|++.++.|+++|+|+||||.++|+.|+|||++++|.++++.++..+||+.+++|||.||||||++|+++|+.
T Consensus 338 fpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~s 417 (552)
T KOG2492|consen 338 FPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVS 417 (552)
T ss_pred ChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCChHhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEE
Q 041524 434 LMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELV 513 (524)
Q Consensus 434 ~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~ 513 (524)
+++++++|.+++|+|+++.||.+|+++.|++|+++|.+|+.+|..+|++.+...++..+|.+|.||+|+++|++. ..++
T Consensus 418 LlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl~~Li~~Fre~A~~~~d~lvgc~Qlvlveg~sKrs~-t~~~ 496 (552)
T KOG2492|consen 418 LLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRLFELITFFREEAIKFNDGLVGCTQLVLVEGKSKRSA-TDLC 496 (552)
T ss_pred HHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhccCccccceeeeechhhhhH-HHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984 4899
Q ss_pred EeCCCCcEEEC
Q 041524 514 GKSDRGHRVAF 524 (524)
Q Consensus 514 Gr~~~~~~v~~ 524 (524)
||+|+|++|+|
T Consensus 497 gr~d~~~kv~f 507 (552)
T KOG2492|consen 497 GRNDGNLKVIF 507 (552)
T ss_pred cccCCCeEEEe
Confidence 99999999997
No 2
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-87 Score=700.22 Aligned_cols=403 Identities=42% Similarity=0.730 Sum_probs=363.0
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccc
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGR 155 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 155 (524)
++||||+|||||||++|||+|++.|.+.||+..++++++||||+||||+|+++|+++++++|+++.
T Consensus 2 ~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~-------------- 67 (437)
T COG0621 2 MKKVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELK-------------- 67 (437)
T ss_pred CceEEEEecCCCccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHH--------------
Confidence 467999999999999999999999999999433888999999999999999999999999999881
Q ss_pred cccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCcccccccc--ccccccCCCccccCCC
Q 041524 156 SQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSL--EETYADISPVRISKNS 233 (524)
Q Consensus 156 ~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~--~~~~~~l~p~r~~~~~ 233 (524)
+.+|+.+|+|+||+|+.. ++++++.|.||+|+|++....++++++....++.......+. ...+..++|. ....
T Consensus 68 -~~~p~~~iiVtGC~aq~~-~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 143 (437)
T COG0621 68 -KLKPDAKIIVTGCLAQAE-EEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPR--REGG 143 (437)
T ss_pred -HhCCCCEEEEeCCccccC-HHHHhhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccccCCCC--cCCC
Confidence 123899999999999998 888888999999999999999999999886654433222222 1223444444 4678
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
.+|||+|+.||++.||||++|++||+.||||+++|++|++.|+++|++||+|+|||+++| |.++ .+
T Consensus 144 ~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aY------------G~D~--~~ 209 (437)
T COG0621 144 VRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAY------------GKDL--GG 209 (437)
T ss_pred eEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhc------------cccC--CC
Confidence 899999999999999999999999999999999999999999999999999999999999 4432 00
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~ 393 (524)
| ...|.+||+.+.++.+..|+|++++||..+++++++++++.|+.|+++|||+||||+++|++|+|+||.
T Consensus 210 ~----------~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~ 279 (437)
T COG0621 210 G----------KPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTV 279 (437)
T ss_pred C----------ccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCH
Confidence 0 246999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHH
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRL 473 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl 473 (524)
+++++.++.+|+.+|++.+++|||+||||||+|||++|++|+++++++.+++|+|||+||||++ .|.++||+++|++|+
T Consensus 280 e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa-~~~~qvp~~vkkeR~ 358 (437)
T COG0621 280 EEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAA-LMPDQVPEEVKKERL 358 (437)
T ss_pred HHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccc-cCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 588999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCEEEEEEec-cCCCCCCCeEEEeCCCCcEEEC
Q 041524 474 TELIEAFRESTGQCYDSQVGTVQLVLVEG-PNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~vG~~~~vLve~-~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
++|.++..++..+++++++|+++.||||+ .++. +.+.||+++|.+|+|
T Consensus 359 ~~L~~l~~~~~~~~~~~~vG~~~~VLVe~~~~~~---~~~~Grt~~~~~v~~ 407 (437)
T COG0621 359 RRLQELQQQISAEFNQKLVGKTLEVLVEEGGSKK---GELIGRTENYRPVVF 407 (437)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcC---CceEEEcCCCCEEEe
Confidence 99999999999999999999999999995 4432 268999999999986
No 3
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.2e-81 Score=667.50 Aligned_cols=406 Identities=48% Similarity=0.845 Sum_probs=358.8
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccc
Q 041524 75 SQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATG 154 (524)
Q Consensus 75 ~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 154 (524)
+.+++||+|||||||++|+|.|.+.|.+.||+. ++++++||+|+||||+|++.|+++++++++.++.+|+
T Consensus 9 ~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~-~~~~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~--------- 78 (449)
T PRK14332 9 KLGKVYIETYGCQMNEYDSGIVSSLMRDAEYST-SNDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKK--------- 78 (449)
T ss_pred CCCEEEEEecCCCCCHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEEccCeechHHHHHHHHHHHHHHHHH---------
Confidence 456799999999999999999999999999987 7888999999999999999999999999988755543
Q ss_pred ccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccc-cccccccccCCCccccCCC
Q 041524 155 RSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTL-LSLEETYADISPVRISKNS 233 (524)
Q Consensus 155 ~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~-~~~~~~~~~l~p~r~~~~~ 233 (524)
.+|+.+|+||||||+.++++++.+.+.||+|++++++..+++|++.+..|....... ......+.+++|.. ...
T Consensus 79 ---~~p~~~ivv~GC~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~ 153 (449)
T PRK14332 79 ---RNPNLVIGVLGCMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDEIEPRV--VNG 153 (449)
T ss_pred ---hCCCCEEEEECcccccchHHHhhccCCceEEECCCCHHHHHHHHHHHhcCCceeeecccccccccccccccc--cCC
Confidence 358889999999999999999755556999999999999999999887654321110 01112233344321 234
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..+||++|||||++|+||++|..+|++|+||+++|++|++.+.++|+++|+|+|+|++.| |.+
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y------------~~~----- 216 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSY------------KEQ----- 216 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcc------------cCC-----
Confidence 679999999999999999999999999999999999999999999999999999999999 321
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~ 393 (524)
...|.+|++++.+..+..|++|.+++|.+++++++++|++++++|+++|+|+||||+++|++|+|+++.
T Consensus 217 -----------~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~ 285 (449)
T PRK14332 217 -----------STDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSK 285 (449)
T ss_pred -----------cccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCH
Confidence 135899999887766667999999999999999999999986669999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHH
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRL 473 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl 473 (524)
+++.++++.+++++|++.+.+|||+||||||++||++|++|+++++++.+++|.|||+|||++++.|.+++|++++++|+
T Consensus 286 ~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~ 365 (449)
T PRK14332 286 EEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARL 365 (449)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999995588999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 474 TELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
++|.+++++++.++++.++|+++.||||+.++++++ .++||+++|.+|+|
T Consensus 366 ~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~~-~~~gr~~~~~~v~~ 415 (449)
T PRK14332 366 TKLVDLQTSISHEQNRARIGRVYSILIENTSRKSEK-QLCGRTPCGRMTVF 415 (449)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCCCCC-eEEEECCCCeEEEE
Confidence 999999999999999999999999999987765433 78999999999875
No 4
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-80 Score=666.60 Aligned_cols=417 Identities=52% Similarity=0.870 Sum_probs=362.7
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccc
Q 041524 74 HSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVAT 153 (524)
Q Consensus 74 ~~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 153 (524)
++.+++||+||||+||++|||.|++.|.+.||+. ++++++||+|+||||+|++.|++++.+.|..++.+|
T Consensus 21 ~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~-~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k--------- 90 (467)
T PRK14329 21 KNTKKLFIESYGCQMNFADSEIVASILQMAGYNT-TENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALK--------- 90 (467)
T ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHH---------
Confidence 4456799999999999999999999999999997 788899999999999999999999999997764444
Q ss_pred cccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCCC
Q 041524 154 GRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNS 233 (524)
Q Consensus 154 ~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~~ 233 (524)
+.+|+++||||||||+..++++++..+.||+|++|+++.+++++++.+..|....+........+.++.|.+.....
T Consensus 91 ---~~~p~~~ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (467)
T PRK14329 91 ---KKNPKLIVGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEGRKAINVILSKEETYADISPVRLGGNG 167 (467)
T ss_pred ---hhCCCcEEEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccccCCC
Confidence 23588999999999999999999877779999999999999999998876643222211111123333333333445
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
.+++|++|||||++|+||++|..+|++|+||+++|++||+.+.+.|+++|+|+|+|++.| |.+. +
T Consensus 168 ~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y------------~~d~---~ 232 (467)
T PRK14329 168 VSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSY------------LWYG---G 232 (467)
T ss_pred cEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccc------------cccc---C
Confidence 789999999999999999999999999999999999999999999999999999999988 2210 0
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~ 393 (524)
+.. ......+.+||+.+.+..+..+++|.+.+|..++++++++|+++++||+++|||+||+|+++|+.|+|+++.
T Consensus 233 ~~~-----~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~ 307 (467)
T PRK14329 233 GLK-----KDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTR 307 (467)
T ss_pred Ccc-----ccccccHHHHHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCH
Confidence 000 001246899999998766667999999999999999999999987899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHH
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRL 473 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl 473 (524)
+++.++++.+++..|++.+++|||+||||||+||+++|++|+.+++++.+++|.|+|+|||++++.|++++|.+++++|+
T Consensus 308 ~~~~~~i~~ir~~~~~~~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~ 387 (467)
T PRK14329 308 EWYLDRIDAIRRIIPDCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRL 387 (467)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 474 TELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
++|.++..++..+++++++|+++.||||+.++.+++ .+.||+++|.+|+|
T Consensus 388 ~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~-~~~g~t~~~~~v~~ 437 (467)
T PRK14329 388 NEIIALQQELSLERNQRDIGKTFEVLIEGVSKRSRE-QLFGRNSQNKVVVF 437 (467)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCC-eEEEECCCCeEEEE
Confidence 999999999999999999999999999986543323 68899999999875
No 5
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.6e-80 Score=659.22 Aligned_cols=406 Identities=45% Similarity=0.790 Sum_probs=357.6
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+++||+||||+||++|||.|.+.|.+.||+. ++++++||||+||||+|++.|+.++.+.|+.++.+|
T Consensus 7 ~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~-~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k------------ 73 (445)
T PRK14340 7 RKFYIHTFGCQMNQADSEIITALLQDEGYVP-AASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAK------------ 73 (445)
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHh------------
Confidence 4699999999999999999999999999997 888899999999999999999999999998774444
Q ss_pred ccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCCCeEE
Q 041524 157 QSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTA 236 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~~~~a 236 (524)
+.+|+.+|+|+||+|+..++++++..|+||+|++++.+..+++++.....+.............+..+++.+ .....+
T Consensus 74 ~~~~~~~ivv~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a 151 (445)
T PRK14340 74 RRRKGLLVGVLGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAREGARPAALDFNQSETYAGIEPVR--SGSISA 151 (445)
T ss_pred hcCCCCEEEEeCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCcceecccccccccccccccc--CCCcEE
Confidence 235888999999999999999998889999999999999999999876544321100000111222233222 244679
Q ss_pred EEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
||++|||||++|+||++|..+|++|+||+++|++|++.+.++|+++|+|+|+|+++|++ +.
T Consensus 152 ~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d------------~~------- 212 (445)
T PRK14340 152 FVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSD------------PE------- 212 (445)
T ss_pred EEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhc------------cC-------
Confidence 99999999999999999999999999999999999999999999999999999999932 11
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHH
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~ 396 (524)
....+.+||+++.+..+..+++|.+.+|..++++++++|+++++||+++|+|+||+|+++|+.|+|+++.+++
T Consensus 213 -------~~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~ 285 (445)
T PRK14340 213 -------AGADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEY 285 (445)
T ss_pred -------CCchHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHH
Confidence 1235889999998766677999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTEL 476 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l 476 (524)
.++++.+++.+||+.+.+|||+||||||+++|++|++|+++++++.+++|.|+|+|||++++.+.+++|.+++++|+++|
T Consensus 286 ~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l 365 (445)
T PRK14340 286 LEKIALIRSAIPGVTLSTDLIAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEI 365 (445)
T ss_pred HHHHHHHHHhCCCCEEeccEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996688999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 477 IEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 477 ~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
.++.+++..++++.++|+++.||||+.+++.++ .++||+++|.+|+|
T Consensus 366 ~~l~~~~~~~~~~~~vG~~~~vlve~~~~~~~~-~~~grt~~~~~v~~ 412 (445)
T PRK14340 366 IDLQNGISAELFQRAVGSVVEVLAESESRRSSE-QLMGRTDGNRVVVF 412 (445)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEecccCCCC-eEEEECCCCeEEEE
Confidence 999999999999999999999999976554323 68899999999875
No 6
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.2e-79 Score=658.16 Aligned_cols=408 Identities=40% Similarity=0.710 Sum_probs=357.4
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccc
Q 041524 75 SQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATG 154 (524)
Q Consensus 75 ~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 154 (524)
.++++||+|||||||++|||.|+++|.+.||+. ++++++||+|+||||+|+++|+++++..|.+++.+|+
T Consensus 65 ~~~~~~i~T~GC~~N~~Dse~~~~~L~~~Gy~~-~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~--------- 134 (509)
T PRK14327 65 NGRKFYIRTYGCQMNEHDTEVMAGIFEALGYEP-TDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKR--------- 134 (509)
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCcCEE-CCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHh---------
Confidence 345699999999999999999999999999987 7888999999999999999999999999988755543
Q ss_pred ccccCCCCEEEEEcccccccH--HHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCcccccccc-ccccccCCCccccC
Q 041524 155 RSQSKHPPKIVVLGCMAERLK--DKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSL-EETYADISPVRISK 231 (524)
Q Consensus 155 ~~~~~p~~~IvvgG~~at~~~--e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~-~~~~~~l~p~r~~~ 231 (524)
.+|+.+|+|.||||+..+ +++++.+|+||+|+++.....+++++.....+........+. ...+.+++..+ .
T Consensus 135 ---~~p~~~i~v~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~ 209 (509)
T PRK14327 135 ---ENPDLLIGVCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEVWSKEGDVIENLPKVR--E 209 (509)
T ss_pred ---hCCCCEEEEEcchhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeecccccccccccccccc--C
Confidence 358899999999999998 888888999999999999999999998754333211111111 11122233222 3
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
....+||.++||||+.|+||++|+++|++|++++++|++||+.+.+.|+++|+|+|+|+++| |.++.
T Consensus 210 ~~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~y------------g~d~~- 276 (509)
T PRK14327 210 GNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAY------------GKDFE- 276 (509)
T ss_pred CCeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccC------------ccccc-
Confidence 56789999999999999999999999999999999999999999999999999999999999 43210
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
.....|.+||+.+.+. +..|++|++.+|.+++++++++|++++..|+++|||+||||+++|+.|+|++
T Consensus 277 -----------~~~~~l~~Ll~~I~~~-~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~ 344 (509)
T PRK14327 277 -----------DIEYGLGDLMDEIRKI-DIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKY 344 (509)
T ss_pred -----------ccchHHHHHHHHHHhC-CCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCC
Confidence 0013588999999876 4568999999999999999999999844488999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHH
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQR 471 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~ 471 (524)
+.+++.++++.+++++|++.+++|||+||||||+|||++|++|+++++++.+++|.|+|+|||+++. +.++||.+++++
T Consensus 345 t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~-~~~~vp~~vk~~ 423 (509)
T PRK14327 345 TRESYLELVRKIKEAIPNVALTTDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAK-MKDNVPMEVKKE 423 (509)
T ss_pred CHHHHHHHHHHHHHhCCCcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHh-CcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 472 RLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 472 Rl~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
|+++|.++.++++.+.++.++|+++.||||+.+++++. .+.||+++|.+|+|
T Consensus 424 R~~~l~~l~~~~~~~~~~~~~G~~~~VLve~~~~~~~~-~~~Grt~~~~~V~~ 475 (509)
T PRK14327 424 RLQRLNALVNEYSAKKMKRYEGQTVEVLVEGESKKNPE-VLAGYTRKNKLVNF 475 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCc-eEEEECCCCcEEEE
Confidence 99999999999999999999999999999998765443 78899999999986
No 7
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-78 Score=649.67 Aligned_cols=409 Identities=39% Similarity=0.666 Sum_probs=351.4
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+++||+||||+||++|||.|++.|.+.||+. ++++++||||+||||+|++.|++++++++..++.+|
T Consensus 1 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~-~~~~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k------------ 67 (455)
T PRK14335 1 MTYFFETYGCQMNVAESASMEQLLLARGWTK-AVDAETCDVLIINTCSVRITAETRVFGRLGLFSSLK------------ 67 (455)
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEeccceechHHHHHHHHHHHHHHhh------------
Confidence 3799999999999999999999999999997 888899999999999999999999999988774433
Q ss_pred ccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCcccccccc-ccccccCC-------Ccc
Q 041524 157 QSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSL-EETYADIS-------PVR 228 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~-~~~~~~l~-------p~r 228 (524)
+.|+.+||||||||+..++++++..|+||+|++++.+..++++++....+....+..... ...+.+++ |..
T Consensus 68 -~~~~~~ivv~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 146 (455)
T PRK14335 68 -KKRAFFIILMGCMAERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSS 146 (455)
T ss_pred -hCCCcEEEEecccccchHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCccc
Confidence 247889999999999999999988899999999999999999988754321110000010 01111111 111
Q ss_pred ccCCCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 229 ISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 229 ~~~~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
+......+||+++||||++|+||++|..+|+.|+||+++|++|++.+.+.|+++|+|+|+|+++|+.. +
T Consensus 147 ~~~~~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~-----------~ 215 (455)
T PRK14335 147 YSEGSFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGR-----------D 215 (455)
T ss_pred ccCCCceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccc-----------c
Confidence 11235679999999999999999999999999999999999999999999999999999999999311 1
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHh----hCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHH
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSL----EFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVL 384 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~----~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL 384 (524)
. ......+.+||+++.+ ..+..|+++.+.+|..++++++++|+++++||+++|+|+||||+++|
T Consensus 216 ~------------~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vL 283 (455)
T PRK14335 216 R------------EGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVL 283 (455)
T ss_pred c------------cCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHH
Confidence 0 0001358889888852 23456899999999999999999999977799999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCC
Q 041524 385 ERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDV 464 (524)
Q Consensus 385 ~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v 464 (524)
+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||+++|++|++|+++++++.+++|.|+|+|||++|. +.++|
T Consensus 284 k~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~-~~~~v 362 (455)
T PRK14335 284 KRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYD-FPDRI 362 (455)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhh-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 88999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 465 PEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 465 ~~~~k~~Rl~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
|.+++++|+++|.++.+++..+++++++|+++.||||+.++++++ .++||+++|.+|+|
T Consensus 363 ~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~-~~~g~t~~~~~v~~ 421 (455)
T PRK14335 363 PDEVKIARLQRVIALQMSITLKKMKARVGKTLPVLVESRSRNNPE-ELFGHTELGEMTVL 421 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEeccccCCCC-eeEEECCCCeEEEE
Confidence 999999999999999999999999999999999999986554333 78999999999975
No 8
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=4.5e-78 Score=644.58 Aligned_cols=410 Identities=36% Similarity=0.617 Sum_probs=353.5
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccc
Q 041524 75 SQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATG 154 (524)
Q Consensus 75 ~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 154 (524)
+.+|+||+||||+||++|+|.|.+.|.+.||+. ++. ++||+|+||||+|+..|++++++.|++++.+|+
T Consensus 2 ~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~-~~~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~--------- 70 (446)
T PRK14337 2 HDRTFHIITFGCQMNVNDSDWLARALVARGFTE-APE-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATK--------- 70 (446)
T ss_pred CCcEEEEEeeCCCCcHHHHHHHHHHHHHCCCEE-CCc-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHH---------
Confidence 346799999999999999999999999999987 564 789999999999999999999999998855543
Q ss_pred ccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCC-ccccCCC
Q 041524 155 RSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISP-VRISKNS 233 (524)
Q Consensus 155 ~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p-~r~~~~~ 233 (524)
.+|+.+||||||+|+.+++++++..|+||+|++++++..++++++.+..+........+....+.+..+ .......
T Consensus 71 ---~~p~~~ivv~GC~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (446)
T PRK14337 71 ---KNPDVFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWGNGTVP 147 (446)
T ss_pred ---hCCCCEEEEECCccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCCceecccccccccccccccccccCCC
Confidence 358899999999999999999988999999999999999999998875433211011111111111110 0112345
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..+||+++||||++|+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.| |.+.
T Consensus 148 ~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~y------------g~d~---- 211 (446)
T PRK14337 148 ASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSY------------GQDK---- 211 (446)
T ss_pred cEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCcccc------------ccCC----
Confidence 689999999999999999999999999999999999999999999999999999999998 3221
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~ 393 (524)
...+..+.+|++++.+..+..+++|.+.+|..++++++++|++.++||.++++|+||+|+++|+.|+|+++.
T Consensus 212 --------~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~ 283 (446)
T PRK14337 212 --------HGDGTSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDM 283 (446)
T ss_pred --------CCCCccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCH
Confidence 001246889999998765666899999999999999999999976789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHH
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRL 473 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl 473 (524)
+++.++++.+++.+|++.+.+|||+||||||++|+++|++|+.+++++.+++|.|||+|||+++. |.++||.+++++|+
T Consensus 284 e~~~~~v~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~-~~~~v~~~vk~~R~ 362 (446)
T PRK14337 284 ARYLDIVTDLRAARPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTRAEM-LPGKVPEEVKSARL 362 (446)
T ss_pred HHHHHHHHHHHHhCCCCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCcccc-CCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 88999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCC--CCeEEEeCCCCcEEE
Q 041524 474 TELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAP--DTELVGKSDRGHRVA 523 (524)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~--~~~~~Gr~~~~~~v~ 523 (524)
++|.++++++..+++++++|+++.||||+.++..+ .+.+.||+++|.+|+
T Consensus 363 ~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~~~~~~~~g~~~~~~~v~ 414 (446)
T PRK14337 363 ARLQELQNELTERWLQARVGRKTTVLLEGPSRKPGEGGDSWQGRDPGGRVVN 414 (446)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEEEeccccCCCCCceEEEECCCCeEEE
Confidence 99999999999999999999999999997543211 125789999999863
No 9
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=8.3e-78 Score=648.90 Aligned_cols=410 Identities=36% Similarity=0.615 Sum_probs=356.4
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccc
Q 041524 74 HSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVAT 153 (524)
Q Consensus 74 ~~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 153 (524)
++.++++|+||||+||++|||.|++.|.+.||+. ++++++||||+||||+|++.|+++++..++.++.+|+
T Consensus 11 ~~~~~~~i~T~GC~~N~~dse~~~~~L~~~G~~~-~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~-------- 81 (502)
T PRK14326 11 RGARTYQVRTYGCQMNVHDSERLAGLLEAAGYVR-AAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKR-------- 81 (502)
T ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHCCCEE-CCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHH--------
Confidence 4446799999999999999999999999999997 7888999999999999999999999988888855553
Q ss_pred cccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCc-cccccccccccccCCCccccCC
Q 041524 154 GRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKG-INTLLSLEETYADISPVRISKN 232 (524)
Q Consensus 154 ~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~-~~~~~~~~~~~~~l~p~r~~~~ 232 (524)
.+|+.+||||||||+.+++++++..|+||+|++++++..|++++..+..|... ......+ ..+....|.+. ..
T Consensus 82 ----~~p~~~VvvgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~~~p~~~p~~~-~~ 155 (502)
T PRK14326 82 ----ANPGMQIAVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARHNKEAQVEIAESL-EQFPSTLPARR-ES 155 (502)
T ss_pred ----hCCCCEEEEECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhCCCccccccccc-ccccccccccc-CC
Confidence 35889999999999999999998789999999999999999999988655432 1111111 11222223221 23
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
.+.+||+||||||++|+||++|..+|++|+||+++|++||+.+.++|+++|+|+|+|++.| |.++
T Consensus 156 ~~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~y------------G~d~--- 220 (502)
T PRK14326 156 AYAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAY------------GVSF--- 220 (502)
T ss_pred CceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeeccccc------------ccCC---
Confidence 4578999999999999999999999999999999999999999999999999999999999 4331
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT 392 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t 392 (524)
.....|.+|++.+..+.+..|++|++++|..+++++|++|++++++|.++++|+||+|+++|+.|+|+++
T Consensus 221 ----------~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t 290 (502)
T PRK14326 221 ----------GDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYR 290 (502)
T ss_pred ----------CCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCC
Confidence 0123688899988776555689999999999999999999999666999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHH
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRR 472 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~R 472 (524)
.+++.++++.+++.+|++.+.+|||+||||||++||++|++|+.+++++.+++|.|+|+|||+++. +.+++|.+++++|
T Consensus 291 ~~~~~~~v~~lr~~~~~i~i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~-~~~~v~~~v~~~R 369 (502)
T PRK14326 291 SERFLGILEKVRAAMPDAAITTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAE-MEGQLPKAVVQER 369 (502)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHh-CcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999995 7889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCEEEEEEec-cCCCCC-CCeEEEeCCCCcEEEC
Q 041524 473 LTELIEAFRESTGQCYDSQVGTVQLVLVEG-PNKKAP-DTELVGKSDRGHRVAF 524 (524)
Q Consensus 473 l~~l~~~~~~~~~~~~~~~vG~~~~vLve~-~~~~~~-~~~~~Gr~~~~~~v~~ 524 (524)
+++|.++..++..+.++.++|+++.||||. .++... ...+.||+++|.+|+|
T Consensus 370 ~~~l~~~~~~~~~~~~~~~vg~~~~vLve~~~~~~~~~~~~~~g~~~~~~~V~~ 423 (502)
T PRK14326 370 YERLVALQERISLEENRKLVGRTVELLVATGEGRKDAATHRMSGRARDGRLVHF 423 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccccCCcCceeEEECCCCCEEEE
Confidence 999999999999999999999999999994 322110 1268899999999875
No 10
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5e-78 Score=643.41 Aligned_cols=403 Identities=38% Similarity=0.650 Sum_probs=355.2
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+++||+||||+||++|||.|++.|.+.||+. ++++++||+|+||||+|++.|++++++.|.+++.+|+
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~-~~~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~----------- 68 (437)
T PRK14331 1 MKYYIKTFGCQMNFNDSEKIKGILQTLGYEP-ADDWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKE----------- 68 (437)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHH-----------
Confidence 3799999999999999999999999999987 7888999999999999999999999999977755543
Q ss_pred ccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCcccccccc---ccccccCCCccccCCC
Q 041524 157 QSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSL---EETYADISPVRISKNS 233 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~---~~~~~~l~p~r~~~~~ 233 (524)
.+|+.+|+||||||+..|+++++..|.||+|++++++..++++++.+..|......+.+. ...++.++..+ ...
T Consensus 69 -~~p~~~ivv~Gc~a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld~~p~~~--~~~ 145 (437)
T PRK14331 69 -KNPNALIGVCGCLAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLDEYPTVR--DNK 145 (437)
T ss_pred -hCCCCEEEEEcchhcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccc--CCC
Confidence 358899999999999999999888899999999999999999999876553322211111 11112222111 335
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..+||+++||||++|+||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.| |.++
T Consensus 146 ~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y------------~~~~---- 209 (437)
T PRK14331 146 YCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAY------------GKDI---- 209 (437)
T ss_pred cEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccc------------cCCC----
Confidence 689999999999999999999999999999999999999999999999999999999998 3321
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~ 393 (524)
....+.+|++++.+..+..+++|++.+|..++++++++|+++++||+++|+|+||||+++|+.|+|+++.
T Consensus 210 ----------~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~ 279 (437)
T PRK14331 210 ----------GDVPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTK 279 (437)
T ss_pred ----------CCCCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCH
Confidence 0135889999988876556899998999999999999999987789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHH
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRL 473 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl 473 (524)
+++.++++.+++++||+.+.+|||+||||||+||+++|++|+.+++++.+++|.|+|+|||+++. +.+++|.+++.+|+
T Consensus 280 ~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~~~~-~~~~~~~~~~~~r~ 358 (437)
T PRK14331 280 EEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTPAAY-MEGQEPDEVKTKRM 358 (437)
T ss_pred HHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCCCcchhh-CCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 77899999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 474 TELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
++|.++.+++..+++++++|+++.||||+.++. +.++||+++|.+|+|
T Consensus 359 ~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~---~~~~g~t~~~~~v~~ 406 (437)
T PRK14331 359 NRLLELQKEITFKKALSYEGTVQEVLVEEEKEG---NKLIGRTRTNKWVSI 406 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCC---CcEEEECCCCCEEEE
Confidence 999999999999999999999999999975321 378899999999975
No 11
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.1e-77 Score=642.29 Aligned_cols=412 Identities=35% Similarity=0.596 Sum_probs=358.2
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+++||+||||+||++|||.|.+.|.+.||+. ++++++||+|+||||+|++.|+++++++|+++..+|
T Consensus 7 ~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~-~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k------------ 73 (448)
T PRK14333 7 RSYWITTFGCQMNKADSERMAGILEDMGYQW-AEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRK------------ 73 (448)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHH------------
Confidence 4799999999999999999999999999997 888899999999999999999999999998873332
Q ss_pred ccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCCCeEE
Q 041524 157 QSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTA 236 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~~~~a 236 (524)
+.+|+.+|+||||||+..|+++++..|.||+|++++++..|+++++.+..|...... +....+.+++.++. .....+
T Consensus 74 ~~~p~~~vvv~Gc~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~~~~~~~~--~~~~~~~~l~~~~~-~~~~~a 150 (448)
T PRK14333 74 HKNPDLTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQVDAGNQVVAT--EEIHILEDITKPRR-DSSITA 150 (448)
T ss_pred hcCCCCEEEEECccCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCceeec--cccccccccccccc-CCCeeE
Confidence 345899999999999999999998789999999999999999999987655421110 11112233332221 233579
Q ss_pred EEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
||.++||||++|+||++|..+|+.|++|+++|++||+.+.+.|+++|+|+|+|++.| |.++ . |..
T Consensus 151 ~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~y------------g~d~--~-~~~ 215 (448)
T PRK14333 151 WVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAY------------GRDL--P-GTT 215 (448)
T ss_pred EEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchh------------cCCC--C-Ccc
Confidence 999999999999999999999999999999999999999999999999999999998 3221 0 110
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHH
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~ 396 (524)
. .+.....|.+||+.+.+..+..++++.+.||..++++++++|+++++||.++|||+||+|+++|+.|+|+++.+++
T Consensus 216 p---~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~ 292 (448)
T PRK14333 216 P---EGRHQHTLTDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKY 292 (448)
T ss_pred c---cccccccHHHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHH
Confidence 0 0011236999999998876667899988999999999999999987799999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTEL 476 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l 476 (524)
.++++.+++++|++.+.+|||+||||||+|+|++|++|+++++++.+++|.|+|+|||+++. +.+++|.+++++|+++|
T Consensus 293 ~~~i~~lr~~~p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~-~~~~v~~~~~~~R~~~l 371 (448)
T PRK14333 293 RRIIDKIREYMPDASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAAL-WDNQLSEEVKSDRLQRL 371 (448)
T ss_pred HHHHHHHHHhCCCcEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhh-CCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996 78899999999999999
Q ss_pred HHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 477 IEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 477 ~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
.++++++..+++++++|+++.||||+.++.+++ .+.||+++|.+|+|
T Consensus 372 ~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~-~~~g~t~~~~~v~~ 418 (448)
T PRK14333 372 NHLVEQKAAERSQRYLGRIEEVLVEGINPKDPS-QVMGRTRTNRLTFF 418 (448)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEecccCCCc-eEEEECCCCcEEEE
Confidence 999999999999999999999999976543333 78899999999975
No 12
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.7e-77 Score=639.49 Aligned_cols=407 Identities=39% Similarity=0.684 Sum_probs=356.4
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+|++|+||||+||++|||.|.+.|.+.||+. ++++++||+|+||||+|+..|+.++++.|++++.+|+
T Consensus 4 ~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~-~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~----------- 71 (444)
T PRK14325 4 KKLYIKTYGCQMNEYDSSKMADLLGAEGYEL-TDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKE----------- 71 (444)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHHHCcCEE-CCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHH-----------
Confidence 4699999999999999999999999999997 7888999999999999999999999999988755553
Q ss_pred ccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh-cCCCccccccccccccccCCCccccCCCeE
Q 041524 157 QSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD-YGQKGINTLLSLEETYADISPVRISKNSVT 235 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~-~g~~~~~~~~~~~~~~~~l~p~r~~~~~~~ 235 (524)
.+|+.+||+|||||+..|+++++..|.||+|++++++..|++|++.+. .|.............+..+++++ .....
T Consensus 72 -~~p~~~vvvgGc~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~d~~p~~~--~~~~~ 148 (444)
T PRK14325 72 -KNPDLIIGVGGCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARARRGGKPVVDISFPEIEKFDHLPEPR--AEGPS 148 (444)
T ss_pred -hCCCCEEEEECchhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhcCCceeeeccccccccccccccc--CCCce
Confidence 358899999999999999999987899999999999999999999874 44322211111112233343332 14567
Q ss_pred EEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGF 315 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~ 315 (524)
+|++++||||++|+||++|..+|+.|+||+++|++|++.+.++|+++|+|+|+|++.|+. .++
T Consensus 149 ~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~-----------~~~------ 211 (444)
T PRK14325 149 AFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRG-----------EGP------ 211 (444)
T ss_pred EEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccC-----------CCC------
Confidence 999999999999999999999999999999999999999999999999999999999831 100
Q ss_pred ccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHH
Q 041524 316 NSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREA 395 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~ 395 (524)
..+...+.+|++++.+..+..+++|.+.+|..++++++++|+++++||.++++|+||+|+++|+.|+|+++.++
T Consensus 212 ------~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~ 285 (444)
T PRK14325 212 ------DGEIADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALE 285 (444)
T ss_pred ------CCCcchHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHH
Confidence 00124689999998876555689998889999999999999998678999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHH
Q 041524 396 YLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTE 475 (524)
Q Consensus 396 ~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~ 475 (524)
+.++++.++++.||+.+.+|||+||||||++++++|++|+.+++++.+++|.|+|+|||+++. +++++|.+++++|+++
T Consensus 286 ~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~-~~~~v~~~~~~~r~~~ 364 (444)
T PRK14325 286 YKSIIRKLRAARPDIAISSDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTPAAD-LPDDVPEEVKKERLQR 364 (444)
T ss_pred HHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCchhh-CCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999996 7889999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 476 LIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 476 l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
|.++++++..++++.++|+++.||||+.++.+ +.++||+++|.+|+|
T Consensus 365 l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~~--~~~~g~t~~~~~v~~ 411 (444)
T PRK14325 365 LQALINQQQMAFSRSMVGTVQRVLVEGPSRKD--GQLIGRTENNRVVNF 411 (444)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEEEeecCC--CeEEEECCCCcEEEE
Confidence 99999999999999999999999999765322 368899999999875
No 13
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.7e-76 Score=631.29 Aligned_cols=402 Identities=38% Similarity=0.625 Sum_probs=350.6
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
++++|+||||+||++|||.|.+.|.+.||+. ++++++||+|+||||+|+..|++++++.++++..+++
T Consensus 1 ~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~-~~~~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r----------- 68 (434)
T PRK14330 1 MKFYIKTFGCQMNENDSETMAGLLKKEGFEP-ASNPEEADVVIINTCAVRRKSEEKAYSELGQLLKLKR----------- 68 (434)
T ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEEccceeehHHHHHHHHHHHHHHhcc-----------
Confidence 3699999999999999999999999999997 7888899999999999999999999999998744332
Q ss_pred ccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCCCeEE
Q 041524 157 QSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTA 236 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~~~~a 236 (524)
.++.+||||||||+..|+++++. .+|+|++++++..|+++++.+..|..... ............|.. .....++
T Consensus 69 --~~~~~vvv~Gc~a~~~~ee~~~~--~~d~vvg~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 142 (434)
T PRK14330 69 --KKNLIIGVAGCVAEKEREKLLKR--GADFVIGTRAVPKVTEAVKRALNGEKVAL-FEDKLDEITYELPRI-RSSKHHA 142 (434)
T ss_pred --cCCCEEEEECccccCchhhHHhc--CCcEEEcCCCHHHHHHHHHHHhcCCceEe-ecccccccccccccc-cCCCcEE
Confidence 25789999999999999999874 79999999999999999998876643211 000000001111211 1235689
Q ss_pred EEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
||+++||||++|+||++|+.+|++|+||+++|++||+.+.+.|+++|+|+|+|++.| |.++.
T Consensus 143 ~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~y------------g~~~~------ 204 (434)
T PRK14330 143 WVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAY------------GKDLK------ 204 (434)
T ss_pred EEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEeccccc------------ccCCC------
Confidence 999999999999999999999999999999999999999999999999999999998 43210
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHH
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~ 396 (524)
....+.+||+.+....+..++++.+.+|..++++++++|++++.+|+++|||+||+|+++|+.|+|+++.+++
T Consensus 205 -------~~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~ 277 (434)
T PRK14330 205 -------DGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEY 277 (434)
T ss_pred -------CCccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHH
Confidence 1235888998887766666777888899999999999999985569999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTEL 476 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l 476 (524)
.++++.+++.+|++.+.+|||+||||||+++|++|++|+.+++++++++|.|+|+|||+++.++++++|.+++++|+++|
T Consensus 278 ~~~i~~lr~~~~~i~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l 357 (434)
T PRK14330 278 LELIEKIRSKVPDASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYL 357 (434)
T ss_pred HHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998788999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 477 IEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 477 ~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
.++.+++..++++.++|+++.||||+.++. +.+.||+++|.+|+|
T Consensus 358 ~~~~~~~~~~~~~~~~G~~~~vlve~~~~~---~~~~g~t~~~~~v~~ 402 (434)
T PRK14330 358 LNLQKRINRKLNERYLGKTVEIIVEAKAKN---GLFYGRDIRNKIIAF 402 (434)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEEccCC---CeEEEECCCCEEEEE
Confidence 999999999999999999999999976432 378899999999975
No 14
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1e-75 Score=625.89 Aligned_cols=407 Identities=42% Similarity=0.695 Sum_probs=353.9
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccc
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGR 155 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 155 (524)
+++++|+||||+||++|||.|++.|.+.||+. ++++++||+|+||||+|++.|+++++++|+.++.+|+
T Consensus 1 ~~~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~-~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~---------- 69 (439)
T PRK14328 1 NKKYFIETYGCQMNEEDSEKLAGMLKSMGYER-TENREEADIIIFNTCCVRENAENKVFGNLGELKKLKE---------- 69 (439)
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHHCcCEE-CCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHh----------
Confidence 35699999999999999999999999999997 8888999999999999999999999988888755542
Q ss_pred cccCCCCEEEEEcccccc--cHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccc-cccccccCCCccccCC
Q 041524 156 SQSKHPPKIVVLGCMAER--LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLS-LEETYADISPVRISKN 232 (524)
Q Consensus 156 ~~~~p~~~IvvgG~~at~--~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~-~~~~~~~l~p~r~~~~ 232 (524)
.+|+.+|||+||||+. .+++++++.|.||+|++++++..+++++..+..+......... ....+.+++..+ ..
T Consensus 70 --~~~~~~vvv~GC~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 145 (439)
T PRK14328 70 --KNPNLIIGVCGCMMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKEEGKSVIEIWEKEDGIVEGLPIDR--KS 145 (439)
T ss_pred --hCCCCEEEEECchhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccc--CC
Confidence 3578899999999999 7799987789999999999999999999887543221111111 011112222222 24
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
...+||+++||||++|+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.| |.++.
T Consensus 146 ~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~y------------g~d~~-- 211 (439)
T PRK14328 146 KVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSY------------GKDLE-- 211 (439)
T ss_pred CcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcC------------CcCCC--
Confidence 5679999999999999999999999999999999999999999999999999999999998 43220
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT 392 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t 392 (524)
....+.+|++.+.+..+..++++.+.+|..++++++++|+++++||.++++|+||+|+++|+.|+|+++
T Consensus 212 -----------~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~ 280 (439)
T PRK14328 212 -----------EKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYT 280 (439)
T ss_pred -----------CCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCC
Confidence 123588999988876556689998899999999999999998667999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHH
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRR 472 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~R 472 (524)
.+++.++++.+++.+|++.+.+|||+||||||++|+++|++++.+++++.+++|.|+|+|||+++. +.+++|.+++.+|
T Consensus 281 ~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~-~~~~v~~~~~~~r 359 (439)
T PRK14328 281 REYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTPAAK-MEDQVPEDVKHER 359 (439)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCChhhh-CCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999996 7889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 473 LTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 473 l~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
.+.|.++++++..++++.++|+++.||||+.++..+ +.+.||+++|.+|++
T Consensus 360 ~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~-~~~~g~~~~~~~v~~ 410 (439)
T PRK14328 360 FNRLVELQNKISLEKNKEYEGKIVEVLVEGPSKNDE-NKLTGRTRTNKLVNF 410 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCC-ceEEEECCCCeEEEE
Confidence 999999999999999999999999999997644322 268899999999864
No 15
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.8e-75 Score=619.39 Aligned_cols=384 Identities=38% Similarity=0.633 Sum_probs=343.3
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+++||+||||+||++|+|.|.+.|.+.||+. ++++++||+|+||||+|++.|+.+++++++.++.+++
T Consensus 2 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~-~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~----------- 69 (418)
T PRK14336 2 PGYYLWTIGCQMNQAESERLGRLFELWGYSL-ADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKN----------- 69 (418)
T ss_pred CeEEEEecCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHh-----------
Confidence 3699999999999999999999999999997 7888999999999999999999999998888754442
Q ss_pred ccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCCCeEE
Q 041524 157 QSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTA 236 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~~~~a 236 (524)
.+|+.+|||+||+|+..++++.+..|.||+|++++. ++++++.+.. . ..|. .....+
T Consensus 70 -~~~~~~ivv~GC~~~~~~~~l~~~~p~vd~v~g~~~---~~~~~~~~~~-------~---------~~~~---~~~~~a 126 (418)
T PRK14336 70 -KNPKLKIALTGCLVGQDISLIRKKFPFVDYIFGPGS---MPDWREIPEG-------F---------ILPL---KPPVSA 126 (418)
T ss_pred -hCCCCEEEEECChhcCCHHHHHhhCCCCcEEECCCC---HHHHHHHHhh-------h---------ccCC---CCCeEE
Confidence 357889999999999999999888899999997754 5666554421 0 0111 134679
Q ss_pred EEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
||+++||||++|+||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.| |.++.
T Consensus 127 ~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~y------------g~d~~------ 188 (418)
T PRK14336 127 NVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSY------------GHDLP------ 188 (418)
T ss_pred EEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCcccc------------ccCCC------
Confidence 999999999999999999999999999999999999999999999999999999998 43310
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHH
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~ 396 (524)
....+.+||+++.+..+..++|+.+.+|..++++++++|++.++||+++|+|+||+|+++|+.|+|+++.+++
T Consensus 189 -------~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~ 261 (418)
T PRK14336 189 -------EKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQY 261 (418)
T ss_pred -------CcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHH
Confidence 1235899999998765566999998999999999999999987789999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTEL 476 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l 476 (524)
.++++.+++.+||+.+.+|||+||||||++++++|++|+.+++++.+++|.|+|+|||+++++|+++||.+++++|+++|
T Consensus 262 ~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l 341 (418)
T PRK14336 262 RELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLI 341 (418)
T ss_pred HHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997788999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 477 IEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 477 ~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
.++.+++..++++.++|++..||||+.++ +.+.||+++|.+|+|
T Consensus 342 ~~~~~~~~~~~~~~~~G~~~~vlve~~~~----~~~~g~~~~~~~v~~ 385 (418)
T PRK14336 342 EDLQKETVGKANAALMDTFAEVLVEGLQK----NKWQGRTLGGKLVFL 385 (418)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEEcCC----CeEEEECCCCeEEEE
Confidence 99999999999999999999999997432 267899999999875
No 16
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=100.00 E-value=5.8e-75 Score=619.96 Aligned_cols=409 Identities=40% Similarity=0.685 Sum_probs=350.7
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHC-CCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 78 RIYQETYGCQMNVNDMEIVLSIMKNA-GYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 78 ~~~~~t~GC~~N~~d~e~i~~~L~~~-Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+++|+||||+||++|||.|++.|.+. ||+. ++++++||+|+||||+|+..|++++++.|..++.+|+
T Consensus 1 ~~~i~t~GC~~N~~dse~~~~~l~~~~G~~~-~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~----------- 68 (438)
T TIGR01574 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYAL-TEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKK----------- 68 (438)
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEE-CCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHh-----------
Confidence 48999999999999999999999999 9987 7888999999999999999999999999977644442
Q ss_pred ccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCCCeEE
Q 041524 157 QSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTA 236 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~~~~a 236 (524)
.+|+.+|||+||||+..++++++..|+||+|++++.+..+++++.....+......+......+.+..|........++
T Consensus 69 -~~~~~~ivv~GC~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (438)
T TIGR01574 69 -KNPDLIIGVCGCMASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLTQKFMVVDIDSDESEVAGYFADFRNEGIYKS 147 (438)
T ss_pred -hCCCcEEEEeCccccccHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccCCceeE
Confidence 3578899999999999999998777999999999999999988877644332111111110111111121112245689
Q ss_pred EEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
||+++||||++|+||++|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.|+ |.++
T Consensus 148 ~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~-----------g~d~------- 209 (438)
T TIGR01574 148 FINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYR-----------GKDF------- 209 (438)
T ss_pred EeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCcc-----------CCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999982 1111
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHH
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~ 396 (524)
......|.+|++.+.+..+..|+++++.+|..++++++++|++++++|+++++|+||+|+++|+.|+|+++.+++
T Consensus 210 -----~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~ 284 (438)
T TIGR01574 210 -----EGKTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWY 284 (438)
T ss_pred -----CCCcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHH
Confidence 001235889999998765667999999999999999999999984449999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTEL 476 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l 476 (524)
.++++.+++++|++.+.+|||+||||||++++++|++|+.+++++.+++|.|+|+|||+++. +.+++|.+++++|+.+|
T Consensus 285 ~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~-~~~~v~~~~~~~r~~~l 363 (438)
T TIGR01574 285 LNLVRKLRAACPNVSISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAAD-MPDQIPEEIKKRRLQRL 363 (438)
T ss_pred HHHHHHHHHhCCCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCchhh-CCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996 78899999999999999
Q ss_pred HHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 477 IEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 477 ~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
.++.+++..+++++++|+++.||||+.++..+. .+.||+++|.+|+|
T Consensus 364 ~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~-~~~g~t~~~~~v~~ 410 (438)
T TIGR01574 364 QARHNEILDKKMRKQEGKTFKVLVEGLSRNNPE-ELAGRTENNFLVNF 410 (438)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEeccCCCCc-eEEEECCCCCEEEE
Confidence 999999999999999999999999976433211 67899999999975
No 17
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=100.00 E-value=9.5e-75 Score=615.11 Aligned_cols=396 Identities=33% Similarity=0.520 Sum_probs=343.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCC
Q 041524 81 QETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKH 160 (524)
Q Consensus 81 ~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 160 (524)
|+||||+||++|||.|++.|.+.||+. ++++++||+|+||||+++..|+.++++.++++ | +..|
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~-~~~~~~aD~v~intctv~~~a~~~~~~~i~~~---k------------~~~p 64 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEV-VPDEDKADVYIINTCTVTAKADSKARRAIRRA---R------------RQNP 64 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEeccccchHHHHHHHHHHHHH---H------------hhCC
Confidence 589999999999999999999999997 78888999999999999999999999999877 1 2357
Q ss_pred CCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccc--cCCCeEEEE
Q 041524 161 PPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRI--SKNSVTAFV 238 (524)
Q Consensus 161 ~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~--~~~~~~a~v 238 (524)
+.+||||||||+..|+++++ .|.||+|++|+++..|++|++....+.... ...........+++... ......++|
T Consensus 65 ~~~vvvgGc~a~~~~ee~~~-~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~i 142 (414)
T TIGR01579 65 TAKIIVTGCYAQSNPKELAD-LKDVDLVLGNKEKDKINKLLSLGLKTSFYR-VKNKNFSREKGVPEYEEVAFEGHTRAFI 142 (414)
T ss_pred CcEEEEECCccccCHHHHhc-CCCCcEEECCCCHHHHHHHHHHHhcccCcc-ccccccccccccccccccccCCCeEEEE
Confidence 88999999999999999975 799999999999999999998764432110 01000000011111111 123567899
Q ss_pred EEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccc
Q 041524 239 SVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSM 318 (524)
Q Consensus 239 ~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~ 318 (524)
++|||||++|+||++|..+|++|+||+++|++|++.+.++|+++|+|+|+|++.| |.++.
T Consensus 143 ~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y------------~~d~~-------- 202 (414)
T TIGR01579 143 KVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSY------------GDDLK-------- 202 (414)
T ss_pred EeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchh------------ccCCC--------
Confidence 9999999999999999999999999999999999999999999999999999998 32210
Q ss_pred hhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHH
Q 041524 319 CKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLD 398 (524)
Q Consensus 319 ~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~ 398 (524)
...++.+|++++.+..+..++++.+.+|..++++++++|++++++|.++++|+||+|+++|+.|+|+++.+++.+
T Consensus 203 -----~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~ 277 (414)
T TIGR01579 203 -----NGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLK 277 (414)
T ss_pred -----CCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHH
Confidence 124588999999876556689999999999999999999987445999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHH
Q 041524 399 LVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIE 478 (524)
Q Consensus 399 ~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~ 478 (524)
+++.+++..||+.+.++||+||||||+|++++|++|+.+++++.+++|+|+|+|||+++. +.+++|..++++|+++|.+
T Consensus 278 ~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~-~~~~v~~~~~~~r~~~l~~ 356 (414)
T TIGR01579 278 LVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTPAST-MKDKVPETIKKERVKRLKE 356 (414)
T ss_pred HHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCchhh-CCCCCCHHHHHHHHHHHHH
Confidence 999999977799999999999999999999999999999999999999999999999996 7789999999999999999
Q ss_pred HHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 479 AFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 479 ~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
+.+++..++++.++|+++.||||+.+ ++ .+.||+++|.+|+|
T Consensus 357 ~~~~~~~~~~~~~~g~~~~vlve~~~---~~-~~~g~~~~~~~v~~ 398 (414)
T TIGR01579 357 LAEKNYQEFLKKNIGKELEVLVEKEK---AG-VLTGYSEYYLKVKV 398 (414)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEeCC---CC-eeEEECCCCcEEEe
Confidence 99999999999999999999999743 22 68899999999975
No 18
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=100.00 E-value=2.6e-74 Score=614.47 Aligned_cols=400 Identities=44% Similarity=0.733 Sum_probs=349.9
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 78 ~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
+|+|+||||++|++|+|.|.+.|.+.||+. ++++++||+|+||||+|+..|++++++.+++++.
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~g~~~-~~~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~--------------- 64 (429)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEV-TDDPEEADVIIINTCAVREKAEQKVRSRLGELAK--------------- 64 (429)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEecceeechHHHHHHHHHHHHHH---------------
Confidence 589999999999999999999999999987 7888999999999999999999999999988721
Q ss_pred cCCCC-EEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCcccccccc-ccccccCCCccccCCCeE
Q 041524 158 SKHPP-KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSL-EETYADISPVRISKNSVT 235 (524)
Q Consensus 158 ~~p~~-~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~-~~~~~~l~p~r~~~~~~~ 235 (524)
..++. +||||||||+..|+++++..|++|+|++++.+..|+++++.+. ++... +... ...+..++.++. .....
T Consensus 65 ~~~~~~~vvvgGc~a~~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~-~~~~~--~~~~~~~~~~~~p~~~~-~~~~~ 140 (429)
T TIGR00089 65 LKKKNAKIVVAGCLAQREGEELLKRIPEVDIVLGPQNKERIPEAIESAE-QEKQV--VFNISKDVYEELPRPRS-FGKTR 140 (429)
T ss_pred hCcCCCEEEEECcccccCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh-cCCce--eccccccchhccccccc-CCCeE
Confidence 12333 8999999999999998877899999999888899999998876 32211 1111 112233333332 24568
Q ss_pred EEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGF 315 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~ 315 (524)
++|+++||||++|+||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.| |.++.
T Consensus 141 ~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~y------------g~d~~----- 203 (429)
T TIGR00089 141 AFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAY------------GKDLK----- 203 (429)
T ss_pred EEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccc------------cCCCC-----
Confidence 9999999999999999999999999999999999999999999999999999999988 43321
Q ss_pred ccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHH
Q 041524 316 NSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREA 395 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~ 395 (524)
+...+.+||+++.+..+..|+++.+.+|..++++++++|+++++||.++++|+||+|+++|+.|+|+++.++
T Consensus 204 --------~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~ 275 (429)
T TIGR00089 204 --------GETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREE 275 (429)
T ss_pred --------CCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHH
Confidence 113589999999876556789999899999999999999998667999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHH
Q 041524 396 YLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTE 475 (524)
Q Consensus 396 ~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~ 475 (524)
+.++++.++++.|++.+.++||+||||||+|++++|++|+.+++++.+++|+|+|+|||++++ +.+++|.+++++|+++
T Consensus 276 ~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~~~~-~~~~v~~~~~~~r~~~ 354 (429)
T TIGR00089 276 YLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAAD-MKDQVPEEVKKERLER 354 (429)
T ss_pred HHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCchhh-CCCCCCHHHHHHHHHH
Confidence 999999999998889999999999999999999999999999999999999999999999996 7889999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 476 LIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 476 l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
|.++.+++..++++.++|++..||||+.+..++ +.++||+++|.+|+|
T Consensus 355 l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~-~~~~g~~~~~~~v~~ 402 (429)
T TIGR00089 355 LIALQKEISLEKNKKYVGKTLEVLVEGEEGKKE-GELTGRTENYKPVVF 402 (429)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEEecccCCC-CeEEEECCCCeEEEE
Confidence 999999999999999999999999997543333 378899999999875
No 19
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=100.00 E-value=5.3e-73 Score=604.10 Aligned_cols=394 Identities=29% Similarity=0.511 Sum_probs=340.4
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 78 ~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
++||+||||+||++|||.|.+.|.+.||+. ++++++||||+||||+|+..|+.++++.++++ +
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~-~~~~~~aD~viinTC~v~~~a~~~~~~~i~~~---~------------- 63 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEV-TPNYEDADYVIVNTCGFIEDARQESIDTIGEL---A------------- 63 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEeCCCccchHHHHHHHHHHHH---H-------------
Confidence 489999999999999999999999999997 78888999999999999999999999999887 1
Q ss_pred cCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccc-cCCCccccCCCeEE
Q 041524 158 SKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYA-DISPVRISKNSVTA 236 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~-~l~p~r~~~~~~~a 236 (524)
..+.+||||||||+..|+++++..++||+|++ +..+++|++.+..+..... .... ..+. ..+|........++
T Consensus 64 -~~~~~vvvgGc~a~~~pee~~~~~~~vd~v~g---~~~~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 137 (430)
T TIGR01125 64 -DAGKKVIVTGCLVQRYKEELKEEIPEVHAITG---SGDVENILNAIESREPGDK-IPFK-SEIEMGEVPRILLTPRHYA 137 (430)
T ss_pred -hcCCCEEEECCccccchHHHHhhCCCCcEEEC---CCCHHHHHHHHHHHhccCC-cccc-cccccccccccccCCCeEE
Confidence 12567999999999999999887899999883 4678999988766543211 0000 0000 01121112345779
Q ss_pred EEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
+|+++||||++|+||++|..+|++|+||+++|++||+.+.+.|+++|+|+|+|++.| |.++.
T Consensus 138 ~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~------------g~d~~------ 199 (430)
T TIGR01125 138 YLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAY------------GKDLY------ 199 (430)
T ss_pred EEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCcc------------ccCCC------
Confidence 999999999999999999999999999999999999999999999999999999888 33210
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHH
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~ 396 (524)
+..++.+|++.+.+..+..|+++.+.+|..++++++++|++++.+|.++++|+||+|+++|+.|+|+++.+++
T Consensus 200 -------~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~ 272 (430)
T TIGR01125 200 -------RESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQ 272 (430)
T ss_pred -------CcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHH
Confidence 1246899999998765455888888999999999999999986679999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTEL 476 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l 476 (524)
.++++.++++.|++.+.++||+||||||+|++++|++|+.+++++.+++|.|+|+|||+++. +.++++.+++++|+++|
T Consensus 273 ~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~~~~-~~~~i~~~~~~~r~~~l 351 (430)
T TIGR01125 273 LDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTDAFA-LPDQVPEEVKEERLERL 351 (430)
T ss_pred HHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCcccc-CCCCCCHHHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999996 77899999999999999
Q ss_pred HHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcE
Q 041524 477 IEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHR 521 (524)
Q Consensus 477 ~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~ 521 (524)
.++.+++..+++++++|+++.||||+.++..+ +.+.||+++|.+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~-~~~~g~~~~~~~ 395 (430)
T TIGR01125 352 MQLQQRISAKKNQEFVGKKIEVLIDGYEPETN-LLLIGRTYGQAP 395 (430)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEeccCCCC-CcEEEECccCCc
Confidence 99999999999999999999999998654322 267899999998
No 20
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=6.9e-73 Score=606.30 Aligned_cols=398 Identities=37% Similarity=0.593 Sum_probs=349.3
Q ss_pred cCCCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccc
Q 041524 73 VHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVA 152 (524)
Q Consensus 73 ~~~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~ 152 (524)
.+..+++||+||||+||++|+|.|.+.|.+.||+. ++++++||+|+||||+|++.|+++++++|.+++.+|+
T Consensus 17 ~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~-~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~------- 88 (459)
T PRK14338 17 TPRERRYYVWTVGCQMNVSDSERLEAALQGVGYSP-AERPEDADFIVLNSCSVRASAEERILGKLGELQRLKR------- 88 (459)
T ss_pred CCCCCEEEEEecCCCCCHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHh-------
Confidence 34456799999999999999999999999999997 7888999999999999999999999999888755543
Q ss_pred ccccccCCCCEEEEEcccccccHHHH-HhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccC
Q 041524 153 TGRSQSKHPPKIVVLGCMAERLKDKI-LDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISK 231 (524)
Q Consensus 153 ~~~~~~~p~~~IvvgG~~at~~~e~~-l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~ 231 (524)
.+|+.+|||+||+|+..++++ .+..|.+|+|++++.+..+++++... . ...+. ..++......
T Consensus 89 -----~~p~~~ivv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i~~~~~~~------~---~~~~~--~~~~~~~~~~ 152 (459)
T PRK14338 89 -----QRPDTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEVVALAPNP------I---YQLDE--PALPVADWSH 152 (459)
T ss_pred -----hCCCCEEEEeCCccccChhHhhHhcCCCCcEEECCccHHHHHHHHHhh------c---ccccc--ccccccccCC
Confidence 358889999999999999998 56789999999999999998887531 0 01110 1111111112
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
....+|++++||||++|+||++|..+|+.|++|+++|++|++.+.+.|+++|+|+|++++.| |.++
T Consensus 153 ~~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~y------------G~d~-- 218 (459)
T PRK14338 153 PPVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSY------------GHDL-- 218 (459)
T ss_pred CceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCc------------cccc--
Confidence 45689999999999999999999999999999999999999999999999999999999999 4332
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
.....+.+|++.+.+..+..++++.+.+|..++++++++|++.++||.++++|+||+|+++|+.|+|++
T Consensus 219 -----------~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~ 287 (459)
T PRK14338 219 -----------PGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGY 287 (459)
T ss_pred -----------CChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCC
Confidence 012458999999988655558888888999999999999999877899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCC----CCHH
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDD----VPEE 467 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~----v~~~ 467 (524)
+.+++.++++.+++.+||+.+.+|||+||||||++|+++|++++.+++++.+++|.|+|+|||+++. |.++ +|.+
T Consensus 288 t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~-~~~~~~~~v~~~ 366 (459)
T PRK14338 288 TVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAE-MEDDPALAVPPE 366 (459)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhh-CcCCccCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 7788 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 468 VKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 468 ~k~~Rl~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
++++|.++|..+.+++..++++.++|++..||||+.++ +.+.||+++|.+|+|
T Consensus 367 ~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~----~~~~g~~~~~~~v~~ 419 (459)
T PRK14338 367 EKQRRRRALEQLQEQIATERNARFLGQTVEVLVEGEAK----GKWRGRTRGNKLVFF 419 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEcCC----CeEEEECCCCeEEEE
Confidence 99999999999999999999999999999999997432 268899999999875
No 21
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=7.9e-72 Score=595.88 Aligned_cols=397 Identities=40% Similarity=0.633 Sum_probs=335.1
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 78 ~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
++||+||||+||++|||.|.+.|.+.||+. ++++++||+|+||||+|++.|++++++.|++++.++
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~-~~~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~------------- 67 (440)
T PRK14334 2 KAHIITYGCQMNEYDTHLVESELVSLGAEI-VDSVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEK------------- 67 (440)
T ss_pred eEEEEecCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEeccceeehHHHHHHHHHHHHHhhC-------------
Confidence 699999999999999999999999999997 888899999999999999999999999998873222
Q ss_pred cCCCCEEEEEcccccccH-HHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCCCeEE
Q 041524 158 SKHPPKIVVLGCMAERLK-DKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTA 236 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~~~-e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~~~~a 236 (524)
..++.+|+|+||+|+..+ +.+.+ .+.+|+|++......+++++.. +..... ....+.....+++. .....++
T Consensus 68 ~~~~~~v~v~GC~a~~~~~~~l~~-~~~vd~v~g~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ 140 (440)
T PRK14334 68 AQRPLVVGMMGCLAQLEEGQQMAR-KFGVDVLLGPGALTDIGKALEA---NERFWG-LQFKDELHDHIPPP--PQGKLSA 140 (440)
T ss_pred cCCCcEEEEEcchhccCChhHHhc-CCCCCEEECCCCHHHHHHHHHh---hccccc-cccccccccccccc--cCCCeEE
Confidence 123567999999999986 45544 5789999866555555554432 221111 10001111112221 1346789
Q ss_pred EEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
||+++||||++|+||.+|..+|+.+++++++|++||+.+.+.|+++|+|+|+|++.| |.+.
T Consensus 141 ~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~y------------G~d~------- 201 (440)
T PRK14334 141 HLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSY------------GVDQ------- 201 (440)
T ss_pred EEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEecccccc------------ccCC-------
Confidence 999999999999999999999999999999999999999999999999999999998 3221
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHH
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~ 396 (524)
+....+.+|++.+.+. +..+++|.+.+|..++++++++|++.++||+++++|+||+|+++|+.|+|+++.+++
T Consensus 202 ------~~~~~~~~Ll~~l~~~-~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~ 274 (440)
T PRK14334 202 ------PGFPSFAELLRLVGAS-GIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKY 274 (440)
T ss_pred ------CCcCCHHHHHHHHHhc-CCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHH
Confidence 0113578888888664 445789988899999999999999976689999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTEL 476 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l 476 (524)
.++++.++++.|++.+++|||+||||||++++++|++|+.+++++.+++|.|+|+|||+++. +.+++|.+++++|+++|
T Consensus 275 ~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~~~~-~~~~v~~~~~~~r~~~l 353 (440)
T PRK14334 275 LERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYK-HFQDLPREVKTERLQRL 353 (440)
T ss_pred HHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCChhHh-ccCCCCHHHHHHHHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999997 56799999999999999
Q ss_pred HHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 477 IEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 477 ~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
.++.+++..+++++++|+++.||||+.+++. +.+.||+++|.+|+|
T Consensus 354 ~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~--~~~~g~t~~~~~v~~ 399 (440)
T PRK14334 354 IEKQKEWSYRRNARWVGRTQEVLVRGDAKDA--GFLEGHTRGNHPVLV 399 (440)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEeccCCC--CeEEEECCCCcEEEE
Confidence 9999999999999999999999999865432 378899999999975
No 22
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=7.3e-72 Score=592.12 Aligned_cols=390 Identities=34% Similarity=0.607 Sum_probs=337.5
Q ss_pred CCHHHHHHHHHHHH-HCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEE
Q 041524 88 MNVNDMEIVLSIMK-NAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVV 166 (524)
Q Consensus 88 ~N~~d~e~i~~~L~-~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~Ivv 166 (524)
||++|||.|.+.|. +.||+. ++++++||||+||||+|++.|+++++++|+++..+ .+|+.+|+|
T Consensus 1 ~N~~dse~~~~~l~~~~G~~~-~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~--------------~~~~~~ivv 65 (420)
T PRK14339 1 MNVRDSEHMIAELSQKEDYKL-TQDIKEADLILINTCSVREKPVHKLFSEIGQFNKI--------------KKEGAKIGV 65 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEE-CCCcccCCEEEEeccCccchHHHHHHHHHHHHHHh--------------hCCCCeEEE
Confidence 89999999999999 589997 88889999999999999999999999999987221 236678999
Q ss_pred EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCCCeEEEEEEcccCCc
Q 041524 167 LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSVMRGCNN 246 (524)
Q Consensus 167 gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~~~~a~v~isRGC~~ 246 (524)
.||+|+..++++++..|.||+|++......+++++.... .... ........+ .... ...+...+||++|||||+
T Consensus 66 ~GC~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~-~~~~--~~~~~~~a~i~isrGC~~ 139 (420)
T PRK14339 66 CGCTASHLGEEIIKRAPYVDFVLGARNVSKISQVIHTPK--AVEV-DIDYDESTY-AFAD--FRKSPYKSLVNISIGCDK 139 (420)
T ss_pred ECCccccCCHHHHhhCCCCcEEECCCCHHHHHHHHHhhc--ccce-ecccccccc-cccc--ccCCCeEEEEEecCCCCC
Confidence 999999999999988999999999988888888886531 0000 000000000 0111 113456899999999999
Q ss_pred cCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchh
Q 041524 247 MCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGL 326 (524)
Q Consensus 247 ~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 326 (524)
+|+||++|..+|+.|++|+++|++|++.+.+.|+++|+|+|+|++.| |.++.. .....
T Consensus 140 ~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~y------------g~d~~~----------~~~~~ 197 (420)
T PRK14339 140 KCTYCIVPHTRGKEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNY------------GKRFSS----------EHEKV 197 (420)
T ss_pred CCCcCCcccccCCCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccc------------cCCCcC----------Ccccc
Confidence 99999999999999999999999999999999999999999999999 432100 00123
Q ss_pred hHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHh
Q 041524 327 RFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQI 406 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~ 406 (524)
.+.+||+.+.+..+..|++|++++|..+++++|++|+++++||.++|||+||||+++|+.|+|+++.+++.++++.+++.
T Consensus 198 ~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~ 277 (420)
T PRK14339 198 DFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRAL 277 (420)
T ss_pred cHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 58999999887655668999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041524 407 IPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQ 486 (524)
Q Consensus 407 ~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~~~~~~~~~ 486 (524)
.|++.+.+|||+||||||++||++|++|+.+++++.+++|.|+|+||||++. |.++||.+++++|+++|.++++++..+
T Consensus 278 ~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~a~~-~~~~v~~~~k~~R~~~l~~~~~~~~~~ 356 (420)
T PRK14339 278 VPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTEAAA-WKNQVDEEVASERLERLQNRHKEILDE 356 (420)
T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCchhh-CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999996 889999999999999999999999999
Q ss_pred HHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 487 CYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 487 ~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
++++++|+++.||||+.++. +.+.||+++|.+|+|
T Consensus 357 ~~~~~vG~~~~vlve~~~~~---~~~~g~t~~~~~v~~ 391 (420)
T PRK14339 357 IAKKEVGKTHVVLFEELRAN---GGVAGRSDNNKLVQV 391 (420)
T ss_pred HHHHhCCCEEEEEEEEecCC---CeEEEECCCCeEEEE
Confidence 99999999999999976432 378899999999975
No 23
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=100.00 E-value=1e-70 Score=586.64 Aligned_cols=395 Identities=28% Similarity=0.488 Sum_probs=333.4
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccc
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGR 155 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 155 (524)
.++|||+||||+||++|||.|++.|.+.||+. ++++++||+|+||||+|++.|+++++++|+++ ++
T Consensus 7 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~-~~~~~~aD~ivinTC~v~~~a~~k~~~~i~~~---~~---------- 72 (440)
T PRK14862 7 APKIGFVSLGCPKALVDSERILTQLRAEGYEI-SPSYDGADLVIVNTCGFIDSAVQESLEAIGEA---LA---------- 72 (440)
T ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHHHCcCEE-CCCcccCCEEEEecccccchHHHHHHHHHHHH---Hh----------
Confidence 34799999999999999999999999999997 88889999999999999999999999999886 11
Q ss_pred cccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCcc-c-cCCC
Q 041524 156 SQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVR-I-SKNS 233 (524)
Q Consensus 156 ~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r-~-~~~~ 233 (524)
..+ +|||.||+|+ .++++++.+|.+|+|++......+++++........ ..+.+++|.+ . ....
T Consensus 73 --~~~--~ivv~GC~a~-~~~~~~~~~~~v~~v~g~~~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 138 (440)
T PRK14862 73 --ENG--KVIVTGCLGA-KEDQIREVHPKVLAVTGPHAYEQVMEAVHEHVPKPH---------DPFVDLVPPQGVKLTPR 138 (440)
T ss_pred --cCC--CEEEECCccc-CHHHHHhhCCCceEEECCCCHHHHHHHHHHhhcccc---------ccccccCcchhcccCCC
Confidence 112 3999999999 578888777999999998877777777765421110 0111222211 1 1345
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
.++||++|||||++|+||++|..+|++|+||+++|++|++.+.+.|+++|+|+++|++.|+ .++....
T Consensus 139 ~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg------------~d~~~~~ 206 (440)
T PRK14862 139 HYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYG------------VDVKYRT 206 (440)
T ss_pred cEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhc------------ccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999983 2211000
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~ 393 (524)
.|- ...+...++.+|++++.+. + .|+|+.+.+|..++++++++|++ +..|.++|||+||+|+++|+.|+|+++.
T Consensus 207 ~~~---~~~~~~~~~~~Ll~~l~~~-~-~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~ 280 (440)
T PRK14862 207 GFW---NGRPVKTRMTDLCEALGEL-G-AWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASV 280 (440)
T ss_pred ccc---cccchhhHHHHHHHHHHhc-C-CEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCH
Confidence 000 0000024689999999887 3 38898888888889999999998 3334599999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHH
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRL 473 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl 473 (524)
+++.++++.+++..|++.+.++||+||||||+++|++|++|+++++++.+++|.|+|+|||+++. +.+++|.+++++|+
T Consensus 281 ~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~-~~~~v~~~~~~~r~ 359 (440)
T PRK14862 281 EKTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATAND-LPDQVPEEVKEERW 359 (440)
T ss_pred HHHHHHHHHHHHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhh-CCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999975 78899999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcE
Q 041524 474 TELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHR 521 (524)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~ 521 (524)
++|.++.++++.+++++++|+++.||||+.+++ .+.||+++|.+
T Consensus 360 ~~l~~~~~~~~~~~~~~~~G~~~~vlie~~~~~----~~~Gr~~~~~~ 403 (440)
T PRK14862 360 ARFMEVQQQISAARLQRKVGRTLQVLIDEVDEE----GAIGRSKADAP 403 (440)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCC----CeEEECcccCc
Confidence 999999999999999999999999999976542 36899999997
No 24
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=100.00 E-value=1.5e-69 Score=575.11 Aligned_cols=388 Identities=30% Similarity=0.512 Sum_probs=323.5
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 78 ~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
+++|+||||+||++|||.|++.|.+.||++ ++++++||+|+||||+|+..|+.++++.|+++ + +
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~-~~~~~~ADviiinTC~v~~~a~~~~~~~i~~~---~------------~ 64 (420)
T TIGR01578 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHEL-VNNAEEADLAILNTCTVKNKTEDTMLYRIESL---M------------R 64 (420)
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCEE-CCCcccCCEEEEEeeeeeehHHHHHHHHHHHH---H------------h
Confidence 589999999999999999999999999986 78889999999999999999999999999876 1 1
Q ss_pred cCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCC-ccccccccccccccCCCccccCCCeEE
Q 041524 158 SKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQK-GINTLLSLEETYADISPVRISKNSVTA 236 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~-~~~~~~~~~~~~~~l~p~r~~~~~~~a 236 (524)
.+.+|+||||||+..|++++...+ ++.+++ +..+.+|++.+..... ..... .......+.+.. ......+
T Consensus 65 --~~~~vvv~GC~a~~~~e~~~~~~~-~~~~~g---~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~ 135 (420)
T TIGR01578 65 --NGKHVVVAGCMPQAQKESVYDNGS-VASVLG---VQAIDRLVEVVEETLKKKVHGR-REAGTPLSLPKP--RKNPLIE 135 (420)
T ss_pred --cCCCEEEECCcCccChHHHHhhCC-ccEEEc---CCCHHHHHHHHHHHhcCCcccc-cccccccccccc--cCCCcEE
Confidence 244599999999999999875433 444554 4555555544432211 11000 000001111111 1245679
Q ss_pred EEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
+|+++||||++|+||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.| |.++
T Consensus 136 ~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~y------------g~d~------- 196 (420)
T TIGR01578 136 IIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAY------------GRDI------- 196 (420)
T ss_pred EEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccc------------cCCC-------
Confidence 999999999999999999999999999999999999999999999999999999888 4321
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEecCCCC---CCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPK---DFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~---~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~ 393 (524)
+.++.+|++.+.++....++|+.+++|. .++++++++|+. +++|+++|+|+||+|+++|+.|+|+++.
T Consensus 197 --------~~~l~~Ll~~l~~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~-~~~~~~l~iglQSgsd~iL~~m~R~~~~ 267 (420)
T TIGR01578 197 --------GSRLPELLRLITEIPGEFRLRVGMMNPKNVLEILDELANVYQH-EKVYKFLHLPVQSGSDSVLKEMKREYTV 267 (420)
T ss_pred --------CcCHHHHHHHHHhCCCCcEEEEcCCCCCcccccCHHHHHHHhc-ccccCceEeCCccCCHHHHHhcCCCCCH
Confidence 1358888888877666678999988886 467999999984 5679999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHH
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRL 473 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl 473 (524)
+++.++++.+++.+||+.+.+|||+||||||++++++|++|+.+++++.+++|+|+|+|||+++. +. ++|.+++++|+
T Consensus 268 ~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~~~~-~~-~v~~~~~~~R~ 345 (420)
T TIGR01578 268 SDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTPAAK-MK-RIPTNIVKKRS 345 (420)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCcccC-CC-CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 54 69999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 474 TELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 474 ~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
++|.++.+++..+++++++|+++.||||+.++. ..+.|++ +|.+|++
T Consensus 346 ~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~---~~~~~~~-~~~~v~~ 392 (420)
T TIGR01578 346 KRLTKLYEQVLLEMRDNLIGTRVHVLVTKEGKG---DSLDDED-AYRQVVI 392 (420)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEEEecCCC---CeeeeCC-CCcEEEE
Confidence 999999999999999999999999999975432 2456775 8888764
No 25
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.4e-51 Score=405.94 Aligned_cols=426 Identities=24% Similarity=0.434 Sum_probs=331.8
Q ss_pred CCChhhhhhccccccCCCccCCC--CCccCCCCCCcccCCCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCC
Q 041524 38 GPGLHHFIAQSSLTASQPLADLA--PASEVSSATGSEVHSQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENA 115 (524)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~a 115 (524)
-|++.+|+++.-.+...+.+... ..++...|..+.+++.+++|+.||||.+|.+|+|+|++.|.+.||.. ++ +++|
T Consensus 14 kp~~r~~~~k~v~pk~~kr~~~k~~q~ee~~~ps~s~ipgtqki~iktwgcshnnsdseymagqlaaygy~l-te-~eea 91 (547)
T KOG4355|consen 14 KPGFRLPLNKVVNPKTNKRISSKPDQIEESNRPSSSKIPGTQKIYIKTWGCSHNNSDSEYMAGQLAAYGYAL-TE-PEEA 91 (547)
T ss_pred CCccccccccccccccccccccCchhhhhcCCCccccCCCccEEEEEeecccCCCchhHHHhhhHHhhhhcc-CC-cccc
Confidence 47778887654432222221111 23344456678899999999999999999999999999999999985 45 8999
Q ss_pred cEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHH-HHhhCCcceEEECCCCc
Q 041524 116 EVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDK-ILDADKMVDVVCGPDAY 194 (524)
Q Consensus 116 Dvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~-~l~~~~~vD~Vv~gege 194 (524)
|+++||||+|.++++..+.+.|.+- + ..+.++|+.||.++..|+. .| .++. |+|-...
T Consensus 92 dlwllnsctvknpsed~frn~i~~g----------------~-~~~k~~viagcvpqg~p~~dyl---~gls-vigvqqi 150 (547)
T KOG4355|consen 92 DLWLLNSCTVKNPSEDAFRNLITRG----------------R-SGKKPLVIAGCVPQGSPDLDYL---EGLS-VIGVQQI 150 (547)
T ss_pred cEEEecccccCCchHHHHHHHHHhh----------------h-cCCCceEEEecCCCCCcchhhh---cCce-Eeehhhh
Confidence 9999999999999999888877642 1 2355799999999987753 33 3444 4554444
Q ss_pred ccHHHHHHHHhcCCCcccccccc-ccccccCCCccccCCCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHH
Q 041524 195 RDLPRLLEEVDYGQKGINTLLSL-EETYADISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD 273 (524)
Q Consensus 195 ~~l~~Ll~~~~~g~~~~~~~~~~-~~~~~~l~p~r~~~~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~ 273 (524)
....++++....|.... ++.. ...-.|+|-+ ..+...-.|.++-||-+.|+||-..+++|..-+.+++++++.++
T Consensus 151 drvvevveetlkghsvr--ll~rr~~galdlpkv--rknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervr 226 (547)
T KOG4355|consen 151 DRVVEVVEETLKGHSVR--LLTRRTLGALDLPKV--RKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVR 226 (547)
T ss_pred hHHHHHHHHHhccceEe--eeecccccccCchhh--ccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHH
Confidence 44555555544554221 1110 0011244433 35667778899999999999999999999999999999999999
Q ss_pred HHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce-EEEEecCCCC
Q 041524 274 ELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM-RFRYTSPHPK 352 (524)
Q Consensus 274 ~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~-~ir~~s~~p~ 352 (524)
...+.|+.+||+...+.+.| |++. +..+..|+.++.+..|+- -+|....+|.
T Consensus 227 t~f~egv~eIwltsedTgay------------grdi---------------g~slp~ll~klv~~iPe~cmlr~gmTnpP 279 (547)
T KOG4355|consen 227 TSFEEGVCEIWLTSEDTGAY------------GRDI---------------GKSLPKLLWKLVEVIPESCMLRAGMTNPP 279 (547)
T ss_pred HHHhcCcEEEEecccccchh------------hhhh---------------hhhhHHHHHHHHHhcchhhhhhhcCCCCc
Confidence 99999999999999999999 5543 456888888888877632 2333333443
Q ss_pred CCCH--HHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHH
Q 041524 353 DFPD--ELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHAD 430 (524)
Q Consensus 353 ~~~~--elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~ 430 (524)
.+-+ +.+...-++|+....+|+++||||+.+|..|+|.|...++...++.+++..|||.|.+|+|+||||||+|||++
T Consensus 280 ~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFee 359 (547)
T KOG4355|consen 280 YILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEE 359 (547)
T ss_pred hHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHH
Confidence 3221 12222234667778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCC
Q 041524 431 TLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDT 510 (524)
Q Consensus 431 tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~ 510 (524)
|++++++.++..+++..|.|+||||+++ | +++|..++++|.++|.++|+.. .-|...+|..+.|||...+-+ +-
T Consensus 360 TmeLv~kYKFPslfInQfyPRpGTPAAk-m-kki~a~~vkkRTk~ls~lF~sy--~pYtd~ige~~rVlVTEva~D--kl 433 (547)
T KOG4355|consen 360 TMELVRKYKFPSLFINQFYPRPGTPAAK-M-KKIPAVEVKKRTKALSELFRSY--TPYTDEIGELHRVLVTEVAAD--KL 433 (547)
T ss_pred HHHHHHHccCchhhhhhcCCCCCChHHh-h-hcccHHHHHHHHHHHHHHHHhc--CCcccccccEEEEEEEEeecc--ce
Confidence 9999999999999999999999999997 4 6999999999999999999874 577888999999999887532 23
Q ss_pred eEEEeCCCCcEEE
Q 041524 511 ELVGKSDRGHRVA 523 (524)
Q Consensus 511 ~~~Gr~~~~~~v~ 523 (524)
.++|.|..|.-|.
T Consensus 434 h~VgHnksYeQVL 446 (547)
T KOG4355|consen 434 HYVGHNKSYEQVL 446 (547)
T ss_pred eeeccccceeEEE
Confidence 7899999998764
No 26
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=100.00 E-value=5e-47 Score=410.82 Aligned_cols=320 Identities=17% Similarity=0.222 Sum_probs=256.6
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHCC-CeeccCCC----------------CCCcEEEEeeccCcchHHHHHHHHHHHHHH
Q 041524 80 YQETYGCQMNVNDMEIVLSIMKNAG-YSEVINVP----------------ENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142 (524)
Q Consensus 80 ~~~t~GC~~N~~d~e~i~~~L~~~G-y~~~~~~~----------------~~aDvv~intc~v~~~a~~~~~~~l~~~~~ 142 (524)
.+.|+| ..++++.|++.| +++.+-|. ..+|+|++++++.......++.+.+|+
T Consensus 19 ~~pPlg-------l~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~--- 88 (497)
T TIGR02026 19 QWPPLW-------VAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAITPAIYIACETLKFARE--- 88 (497)
T ss_pred CcCCHH-------HHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHH---
Confidence 368999 999999999999 56432221 268999997766544444444444432
Q ss_pred hhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCc-----ccccc--
Q 041524 143 LKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKG-----INTLL-- 215 (524)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~-----~~~~~-- 215 (524)
..|+++||+||+||+..|+++++..|.+|+||.||||.++++|+++++.|... +.++.
T Consensus 89 ---------------~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~g~~~~~~~~I~Gi~y~ 153 (497)
T TIGR02026 89 ---------------RLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALENHNFAEDRNKVDGIAFL 153 (497)
T ss_pred ---------------HCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHcCCCCCchhhCCceEEE
Confidence 36999999999999999999998889999999999999999999999877511 11110
Q ss_pred -----------ccccccccCCCcc-c------c--C-CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHH
Q 041524 216 -----------SLEETYADISPVR-I------S--K-NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDE 274 (524)
Q Consensus 216 -----------~~~~~~~~l~p~r-~------~--~-~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~ 274 (524)
+....++.++|.. + . . ....+.+++|||||++|+||..+...+++|.|+++.|++||+.
T Consensus 154 ~~g~i~~~~~~~~i~dLd~~~P~~~l~~~~~y~~~~~~~~~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~ 233 (497)
T TIGR02026 154 RDQEIVETLAAPMIQDLDVYRPDWELVDWKKYIYYPLGVRVAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEW 233 (497)
T ss_pred eCCEEEeCCCCCCccccccCCCCcccCchhhcccccCCCceeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHH
Confidence 0001122233321 0 0 1 2234568999999999999999887788999999999999999
Q ss_pred HHH-CCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEe-cCCCC
Q 041524 275 LWK-EGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYT-SPHPK 352 (524)
Q Consensus 275 l~~-~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~-s~~p~ 352 (524)
+.+ .|++.|.|.|++|+.. ..++.++++++.+..+ ..++|. +.+++
T Consensus 234 l~~~~gv~~~~~~Dd~f~~~-------------------------------~~~~~~l~~~l~~~~~-l~i~w~~~~r~~ 281 (497)
T TIGR02026 234 LVRTHGVGFFILADEEPTIN-------------------------------RKKFQEFCEEIIARNP-ISVTWGINTRVT 281 (497)
T ss_pred HHHHcCCCEEEEEecccccC-------------------------------HHHHHHHHHHHHhcCC-CCeEEEEecccc
Confidence 976 5999999999998754 2358889999877542 233332 24555
Q ss_pred CC--CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHH
Q 041524 353 DF--PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHAD 430 (524)
Q Consensus 353 ~~--~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~ 430 (524)
.+ +++++++|+++ ||.++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.|++++
T Consensus 282 ~i~~d~ell~~l~~a--G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~--Gi~~~~~~I~G~P~et~e~~~~ 357 (497)
T TIGR02026 282 DIVRDADILHLYRRA--GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQH--NILSEAQFITGFENETDETFEE 357 (497)
T ss_pred cccCCHHHHHHHHHh--CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCcEEEEEEEECCCCCHHHHHH
Confidence 55 89999999999 999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEeeecCCCChhcccC
Q 041524 431 TLTLMKAVGYDMAYMFAYSMRERTHAHRNY 460 (524)
Q Consensus 431 tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~ 460 (524)
|++++.++++++++++.++|+|||++|+.+
T Consensus 358 t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~ 387 (497)
T TIGR02026 358 TYRQLLDWDPDQANWLMYTPWPFTSLFGEL 387 (497)
T ss_pred HHHHHHHcCCCceEEEEecCCCCcHHHHHH
Confidence 999999999999999999999999999754
No 27
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=100.00 E-value=8.7e-45 Score=391.84 Aligned_cols=318 Identities=18% Similarity=0.256 Sum_probs=245.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHCCC----------eeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhh
Q 041524 79 IYQETYGCQMNVNDMEIVLSIMKNAGY----------SEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWK 148 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~~L~~~Gy----------~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~ 148 (524)
-+..|+| .+++++.|.+.-+ +.......++|+|+|++++.......++.+.+|+
T Consensus 30 ~~~~Pl~-------L~ylAa~l~~~~iiD~~~~~~~~~~~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~--------- 93 (472)
T TIGR03471 30 SFWYPTW-------LAQPAAMIPGSRLVDAPPHGVTIDDTLAIAKDYDLVVLHTSTPSFPSDVKTAEALKE--------- 93 (472)
T ss_pred cccCChH-------HHHHHHhccCceEEeCCcccCCHHHHHHHhcCCCEEEEECCCcchHHHHHHHHHHHH---------
Confidence 3567888 9999998863110 0001112479999999998887776666666554
Q ss_pred hcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhc------------CCCccccccc
Q 041524 149 KNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY------------GQKGINTLLS 216 (524)
Q Consensus 149 ~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~------------g~~~~~~~~~ 216 (524)
..|+++||+||+|+|..|+++++..+.+|+||.||||.++++|++.... |....+....
T Consensus 94 ---------~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~g~~~~~i~Gi~~r~~~g~~~~~~~~~ 164 (472)
T TIGR03471 94 ---------QNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAEGKPLAEIDGLSYRGKDGKIVHNPDRP 164 (472)
T ss_pred ---------hCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHcCCChhcCCceEEEcCCCeEEeCCCCC
Confidence 2599999999999999999999877899999999999999998753110 0000000000
Q ss_pred cccccccCCCc-----c-c-----c---CCCeEEEEEEcccCCccCcccccCCCC-C-ccccCChHHHHHHHHHHHHC--
Q 041524 217 LEETYADISPV-----R-I-----S---KNSVTAFVSVMRGCNNMCSFCIVPFTR-G-RERSRPVESIVKEVDELWKE-- 278 (524)
Q Consensus 217 ~~~~~~~l~p~-----r-~-----~---~~~~~a~v~isRGC~~~CsFC~vp~~~-G-~~Rsr~~e~Iv~Ei~~l~~~-- 278 (524)
....++.+|.+ + + . ...+.+.|++|||||++|+||.++... | ++|.++++.|++||+.+.+.
T Consensus 165 ~~~dLd~lP~p~p~~~~~l~~~~y~~~~~~~~~~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~~ 244 (472)
T TIGR03471 165 MIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFP 244 (472)
T ss_pred CccchhhCCCCchhhhccCCHHHcccccccCceEEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhcC
Confidence 01122222211 0 0 0 113456789999999999999987543 4 58999999999999999886
Q ss_pred CCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHH
Q 041524 279 GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDEL 358 (524)
Q Consensus 279 G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~el 358 (524)
|++.|+|.|++|+.. ..++.+|++.+.+.. ..+... .+ ..+++++
T Consensus 245 ~~~~i~f~Dd~f~~~-------------------------------~~~~~~l~~~l~~~~--i~~~~~-~~-~~~~~e~ 289 (472)
T TIGR03471 245 EVREFFFDDDTFTDD-------------------------------KPRAEEIARKLGPLG--VTWSCN-AR-ANVDYET 289 (472)
T ss_pred CCcEEEEeCCCCCCC-------------------------------HHHHHHHHHHHhhcC--ceEEEE-ec-CCCCHHH
Confidence 899999999988744 235778888886642 222222 22 3579999
Q ss_pred HHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 359 LYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 359 L~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
+++|+++ ||.++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.|++++|++++.++
T Consensus 290 l~~l~~a--G~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~--Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 290 LKVMKEN--GLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred HHHHHHc--CCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 9999999 999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCeEEEEeeecCCCChhcccC
Q 041524 439 GYDMAYMFAYSMRERTHAHRNY 460 (524)
Q Consensus 439 ~~d~~~i~~~sp~pGT~~~~~~ 460 (524)
+++.+.++.++|+|||++|+.+
T Consensus 366 ~~~~~~~~~l~P~PGT~l~~~~ 387 (472)
T TIGR03471 366 NPHTIQVSLAAPYPGTELYDQA 387 (472)
T ss_pred CCCceeeeecccCCCcHHHHHH
Confidence 9999999999999999998643
No 28
>PRK00955 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=350.59 Aligned_cols=398 Identities=19% Similarity=0.239 Sum_probs=263.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHCCCeec-cCCC-----------CCCcEEEEeecc-----Cc-chHHHHH---------
Q 041524 81 QETYGCQMNVNDMEIVLSIMKNAGYSEV-INVP-----------ENAEVIFINTCA-----IR-DYAEHKV--------- 133 (524)
Q Consensus 81 ~~t~GC~~N~~d~e~i~~~L~~~Gy~~~-~~~~-----------~~aDvv~intc~-----v~-~~a~~~~--------- 133 (524)
..++| +.+|...|++.||.+- +..| ..++++++.|++ +. ..+..+.
T Consensus 27 hp~fg-------~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~g~P~l~~~vs~g~~dsmv~~yt~~~~~r~~d~ytpg 99 (620)
T PRK00955 27 HPSFG-------TAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKLGKPRLFFLVSAGNMDSMVNHYTASKKLRSKDAYSPG 99 (620)
T ss_pred CCccH-------HHHHHHHHHHCCCEEEEecCCCcCChHHHHhhCCCcEEEEeccccHHHHHhhcchhhhcccccccCCC
Confidence 46789 9999999999999862 2222 367898887766 22 1222211
Q ss_pred --------HHHHHHHHHhhhhhhhcccccccccCCCCEEEEEccccccc----H--------HHHHhhCCcceEEECCCC
Q 041524 134 --------WQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERL----K--------DKILDADKMVDVVCGPDA 193 (524)
Q Consensus 134 --------~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~----~--------e~~l~~~~~vD~Vv~geg 193 (524)
...+...+.+| +..|+++||+||++||.. + ..+|. ...+|+||.|||
T Consensus 100 g~~~~rpdra~i~y~~~ik------------~~~p~~~IvlGG~eaS~rr~~hyd~w~~~~~~siL~-d~~aD~vv~GeG 166 (620)
T PRK00955 100 GKMGLRPDRATIVYCNKIK------------EAYPDVPIIIGGIEASLRRFAHYDYWSDKVRRSILI-DSGADLLVYGMG 166 (620)
T ss_pred CccCCCcchHHHHHHHHHH------------HHCCCCcEEeCChhhhccccccchhhhhhhhHHHhh-ccCCCEEEECCc
Confidence 11111111111 226899999999999984 1 23444 357999999999
Q ss_pred cccHHHHHHHHhcCCCc-----cccc-----------------ccccc--------------------------------
Q 041524 194 YRDLPRLLEEVDYGQKG-----INTL-----------------LSLEE-------------------------------- 219 (524)
Q Consensus 194 e~~l~~Ll~~~~~g~~~-----~~~~-----------------~~~~~-------------------------------- 219 (524)
|.++.+|++++..|... +.++ .+.++
T Consensus 167 E~t~~eL~~~L~~g~~~~~i~~I~G~~~~~~~~~~~~~~~~~lps~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 246 (620)
T PRK00955 167 EKPIVEIARRLKAGEDIKDIKDIRGTVYLTKDLDWIEKDYIELPSYEEVSEDKKKYAEAFKIQYEEQDPIRGKRIVQPHG 246 (620)
T ss_pred HHHHHHHHHHHHcCCCccccccCCceEEecCCCCcCcCceeecCCHHHHhhCHHHHHHHHHHHHHhcCccccceeeEeeC
Confidence 99999999999877421 1110 00000
Q ss_pred -ccc-cCCCc-----------------c-----ccCC-------CeEEEEEEcccCCccCcccccCCCCCc-cccCChHH
Q 041524 220 -TYA-DISPV-----------------R-----ISKN-------SVTAFVSVMRGCNNMCSFCIVPFTRGR-ERSRPVES 267 (524)
Q Consensus 220 -~~~-~l~p~-----------------r-----~~~~-------~~~a~v~isRGC~~~CsFC~vp~~~G~-~Rsr~~e~ 267 (524)
.|. --||. | +... ...++|.++|||++.|+||+++..+|+ ++|||+++
T Consensus 247 ~~~~v~npp~~~l~~~e~d~~y~lpy~r~~hp~y~~~g~ipa~~~i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~es 326 (620)
T PRK00955 247 DRYVVQNPPAPPLTQEELDEVYDLPYTRTYHPSYEEKGGIPAIEEVKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQES 326 (620)
T ss_pred CEEEEECCCCCCCChhhhhhccCCCcccCcchhhccCCCCCceeeEEEEEEeeCCCCCCCCCCCeecccCCcceecCHHH
Confidence 000 00110 1 0111 345789999999999999999999998 49999999
Q ss_pred HHHHHHHHHHC-CCcEEE--EEeccCCCCCCccCCccccCC-CCccccccCcccchhcccchhhHHHHHHHHHhhCCceE
Q 041524 268 IVKEVDELWKE-GVKEVT--LLGQNVNSYNDTSGMEKEVEP-GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMR 343 (524)
Q Consensus 268 Iv~Ei~~l~~~-G~kei~--l~d~n~~~y~~~~~~~~~~~~-g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 343 (524)
|++|++.+.+. |++++. +.|++.+.|+..-........ +..+.+.+..|.... .....+.+||++|.++.+..|
T Consensus 327 Iv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~~clfp~~c~nl~--~d~~~l~~LLr~l~~l~gvkr 404 (620)
T PRK00955 327 ILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNKQCLFPKPCKNLD--VDHKEYLELLRKVRKLPGVKK 404 (620)
T ss_pred HHHHHHHHHhccCCeEEEEeCCCCCccccccccccccccccccccccccCccccccC--cChHHHHHHHHHHhccCCceE
Confidence 99999999987 898875 567888988421100000000 000111111122111 123579999999998766667
Q ss_pred EEEec-CCCCC----CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCC----cEEEE
Q 041524 344 FRYTS-PHPKD----FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPD----VGLSS 414 (524)
Q Consensus 344 ir~~s-~~p~~----~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pg----i~i~~ 414 (524)
++++| ++.+. .++++++.|.+. ..+.+++||+||+|+++|+.|+|+ +.+.+.+.++.+++..+. ..+.+
T Consensus 405 v~isSGIR~D~l~~~~~~~~l~eL~~~-~vsg~L~IapESgSd~VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~ 482 (620)
T PRK00955 405 VFIRSGIRYDYLLHDKNDEFFEELCEH-HVSGQLKVAPEHISDRVLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVP 482 (620)
T ss_pred EEeecceeccccccCCcHHHHHHHHHH-hcCCCceeCcCCCChHHHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEE
Confidence 77776 44433 345577777654 266789999999999999999998 667777766555555433 34899
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCC----------CCCCHHHHHHHHHHHHH------
Q 041524 415 DFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYV----------DDVPEEVKQRRLTELIE------ 478 (524)
Q Consensus 415 ~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~----------~~v~~~~k~~Rl~~l~~------ 478 (524)
+||+||||||++|+++|++|+++++++.++++.|+|+|||+++.+|- ..|+....++++++..-
T Consensus 483 yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~At~Myytg~dp~~~~~v~v~k~~~ek~~qra~l~~~~~~ 562 (620)
T PRK00955 483 YLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLSTTMYYTGLDPLTMEPVYVPKTPKEKAMQRALLQYRKPE 562 (620)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcchhhccccCCCccccCcCCCCCCHHHHHHHHHhhcccCcc
Confidence 99999999999999999999999999999999999999999987542 23455555555555332
Q ss_pred ----HHHHHHHHHHhcccCCEEEEEEec
Q 041524 479 ----AFRESTGQCYDSQVGTVQLVLVEG 502 (524)
Q Consensus 479 ----~~~~~~~~~~~~~vG~~~~vLve~ 502 (524)
+.+.+........||.....|+-.
T Consensus 563 ~~~~~~~~l~~~~r~~l~~~~~~~~~~~ 590 (620)
T PRK00955 563 NYDLVYEALKKAGREDLIGNGPKCLIPP 590 (620)
T ss_pred chhHHHHHHHhCCcccccccCcccCCCC
Confidence 222333334455678777777754
No 29
>PRK01254 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-37 Score=329.03 Aligned_cols=266 Identities=19% Similarity=0.218 Sum_probs=206.5
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc-cccCChHHHHHHHHHHHHC--CCcEEE--EEeccCCCCCCccCCccccCC-CC
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR-ERSRPVESIVKEVDELWKE--GVKEVT--LLGQNVNSYNDTSGMEKEVEP-GA 307 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~-~Rsr~~e~Iv~Ei~~l~~~--G~kei~--l~d~n~~~y~~~~~~~~~~~~-g~ 307 (524)
..++|.++|||++.|+||+++..+|+ ++|||+++|++|++.+.++ |+++++ +.|++.|.|+..-........ ..
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 35789999999999999999999999 7999999999999999974 999999 999999999531100000000 00
Q ss_pred ccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCC---HHHHHHHHcCCCCcceeecCcCCcCHHHH
Q 041524 308 NWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFP---DELLYIMRDRPNVCKYIHLPAQTGNSAVL 384 (524)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~---~elL~~l~~~~~G~~~i~igiESgs~~vL 384 (524)
...+.+..|.++.. ....+.+||+++.++.+..++++.+.++.++. +++++.|++. ..+.+++|++||+|+++|
T Consensus 452 ~~Cl~P~~C~nL~~--dh~~l~eLLrkLr~IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~-hV~g~LkVppEH~Sd~VL 528 (707)
T PRK01254 452 LSCVYPDICPHLDT--DHEPTINLYRRARDLKGIKKILIASGVRYDLAVEDPRYVKELVTH-HVGGYLKIAPEHTEEGPL 528 (707)
T ss_pred ccccCcccccccCC--CHHHHHHHHHHHHhCCCceEEEEEcCCCccccccCHHHHHHHHHh-CCccccccccccCCHHHH
Confidence 11233444544432 23579999999998877778999998887774 8999999884 577899999999999999
Q ss_pred hhhCCC--CCHHHHHHHHHHHHHhCC-CcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCC---CChhcc
Q 041524 385 ERMRRG--YTREAYLDLVQKIRQIIP-DVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRE---RTHAHR 458 (524)
Q Consensus 385 ~~m~R~--~t~e~~~~~v~~ir~~~p-gi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~p---GT~~~~ 458 (524)
+.|+|+ ++.+++.+.++.+++..| ++.+.++||+||||||++||+++++|+++++++..++..|+|.| ||.+|.
T Consensus 529 k~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~t~~T~MYy 608 (707)
T PRK01254 529 SKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANATTMYY 608 (707)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCCcCchHHHh
Confidence 999998 789999999999999987 68899999999999999999999999999999999999999999 888886
Q ss_pred cCCCC------------CCHHHHHHHHHHHHH----------HHHHHHHHHHhcccCCEEEEEEec
Q 041524 459 NYVDD------------VPEEVKQRRLTELIE----------AFRESTGQCYDSQVGTVQLVLVEG 502 (524)
Q Consensus 459 ~~~~~------------v~~~~k~~Rl~~l~~----------~~~~~~~~~~~~~vG~~~~vLve~ 502 (524)
...+. |+...+++++++..- +.+.+.......+||.....||-.
T Consensus 609 tg~dP~~~~~~~~~~v~v~k~~~ek~~qka~l~~~~p~n~~~~~~al~~~gr~dlig~~~~~l~~~ 674 (707)
T PRK01254 609 TGKNPLKKVKYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIREALEAMGKKHLIGNRRDCLVPA 674 (707)
T ss_pred ccCCcccccccCCCeeeccCCHHHHHHHHHHhccCCccchHHHHHHHHhCCccccccCCcccCCCC
Confidence 54433 333445555544332 223333344455677666667653
No 30
>PRK05481 lipoyl synthase; Provisional
Probab=100.00 E-value=1.5e-31 Score=270.19 Aligned_cols=216 Identities=19% Similarity=0.275 Sum_probs=189.1
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
....+||.+|+||+++|+||++|..+| +++++++|+++++.+.+.|+++|.|++++.+.+.+
T Consensus 51 ~~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~---------------- 112 (289)
T PRK05481 51 RGTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPD---------------- 112 (289)
T ss_pred CCeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCccc----------------
Confidence 567899999999999999999998765 78999999999999999999999999988643210
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
.+...+.+|++.|.+..+..++++.++++....++++++++ + |+..+..+.|+ ++++|+.|+|++
T Consensus 113 -----------~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~-a--g~~i~~~~~et-s~~vlk~m~r~~ 177 (289)
T PRK05481 113 -----------GGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLD-A--RPDVFNHNLET-VPRLYKRVRPGA 177 (289)
T ss_pred -----------ccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHh-c--CcceeeccccC-hHHHHHHhCCCC
Confidence 01236899999998877777888888887766777777665 5 88888888888 589999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHH
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQR 471 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~ 471 (524)
+.++++++++.+++.+||+.+.++||+|| |||+||+.+|++++++++++.+++|+|+| |+++.+ +||+.++.+
T Consensus 178 t~e~~le~i~~ar~~~pgi~~~t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~----pa~k~~--~v~~~~k~~ 250 (289)
T PRK05481 178 DYERSLELLKRAKELHPGIPTKSGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQ----PSRKHL--PVERYVTPE 250 (289)
T ss_pred CHHHHHHHHHHHHHhCCCCeEeeeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCC----CccccC--CCCCcCCHH
Confidence 99999999999999999999999999999 99999999999999999999999999999 777445 899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 041524 472 RLTELIEAFRESTGQC 487 (524)
Q Consensus 472 Rl~~l~~~~~~~~~~~ 487 (524)
|+++|.+++.++.+..
T Consensus 251 r~~~l~~~~~~i~~~~ 266 (289)
T PRK05481 251 EFDEYKEIALELGFLH 266 (289)
T ss_pred HHHHHHHHHHHcCchh
Confidence 9999999998876654
No 31
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.98 E-value=8.5e-31 Score=283.05 Aligned_cols=270 Identities=25% Similarity=0.346 Sum_probs=204.1
Q ss_pred CCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCc--ccccc--cccc-----cccc-------
Q 041524 160 HPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKG--INTLL--SLEE-----TYAD------- 223 (524)
Q Consensus 160 p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~--~~~~~--~~~~-----~~~~------- 223 (524)
+...|++||++++..++++++..+ +|+|+.||||.+++++++++..+... +.++. ...+ ....
T Consensus 101 ~~~~v~~GG~~~t~~~~~~~~~~~-~D~iv~GeGE~~~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 179 (490)
T COG1032 101 DKPLVVVGGPEATENPEPLLDFGP-ADIIVIGEGEETLPELLEALEEGEDDPRVPGLALPSFEEIVYDQDLDDVPIPAYD 179 (490)
T ss_pred CCCeEEecCCCcCCCcHHHHhhcC-CCEEEEcCchHHHHHHHHHHhccccccccCccccCChhhcccccccccCCcccee
Confidence 445899999999999999998655 89999999999999999998776431 11100 0000 0000
Q ss_pred --------CCCccccCCCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCC
Q 041524 224 --------ISPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYND 295 (524)
Q Consensus 224 --------l~p~r~~~~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~ 295 (524)
..|..........+|+++||||++|+||.++... ++|.++++++++|++.+++.|.+.+.+..++...|+.
T Consensus 180 ~~~~~~~~~~p~~~~~~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~ 258 (490)
T COG1032 180 LVDDHKRDDLPPYGAGENRAFSVETSRGCPRGCRFCSITKHF-KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGS 258 (490)
T ss_pred ecccccccccCCcccccceEEEEEeccCCCCCCCCCCCcccc-cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCC
Confidence 1111111133468899999999999999998766 7899999999999999999998887765555555621
Q ss_pred ccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCC-HHHHHHHHcCCCCcc
Q 041524 296 TSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFP-DELLYIMRDRPNVCK 370 (524)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~-~elL~~l~~~~~G~~ 370 (524)
.. .. ....+..+...+.+... ...+.+.+.+++.++ ++++.+++.+ |+.
T Consensus 259 ~~-----------~~-------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~--g~~ 312 (490)
T COG1032 259 PA-----------LN-------------DEKRFELLSLELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREA--GLR 312 (490)
T ss_pred cc-----------cc-------------chhhcccchHHHHHHhcccCceeeeeccccCchhcCHHHHHHHHhhC--CCc
Confidence 10 00 01123333323333211 123333346888888 8899999998 999
Q ss_pred eeecCcCCcCHHHHhhhCCCCCHHHHHH-HHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHH---HHHHHHcCCC-eEEE
Q 041524 371 YIHLPAQTGNSAVLERMRRGYTREAYLD-LVQKIRQIIPDVGLSSDFICGFCGETEEEHADT---LTLMKAVGYD-MAYM 445 (524)
Q Consensus 371 ~i~igiESgs~~vL~~m~R~~t~e~~~~-~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~t---l~~l~~l~~d-~~~i 445 (524)
.+.+|+||||+++|+.|+|+++.++..+ +++.+.+. ++.+..+||+|+||||++|+++| ++++.+++.. .+.+
T Consensus 313 ~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~--~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~ 390 (490)
T COG1032 313 RVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEH--GLRVKLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSP 390 (490)
T ss_pred ceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhC--CceeeEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEE
Confidence 9999999999999999999999999995 99999999 99999999999999999999999 6788888885 8899
Q ss_pred EeeecCCCChhccc
Q 041524 446 FAYSMRERTHAHRN 459 (524)
Q Consensus 446 ~~~sp~pGT~~~~~ 459 (524)
+.|+|.|||+++..
T Consensus 391 ~~~~p~p~t~~~~~ 404 (490)
T COG1032 391 SPFVPLPGTPLQEM 404 (490)
T ss_pred eeeeCCCCCchhhc
Confidence 99999999999963
No 32
>PRK07094 biotin synthase; Provisional
Probab=99.95 E-value=2.4e-26 Score=236.79 Aligned_cols=186 Identities=17% Similarity=0.291 Sum_probs=161.8
Q ss_pred EEEEEEcccCCccCcccccCCCCCc-ccc-CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGR-ERS-RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~-~Rs-r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
.+.|++|+||+++|+||.++...+. .|. .++++|+++++.+.+.|+++|.|.+.+-..+ .
T Consensus 40 ~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~------------~------ 101 (323)
T PRK07094 40 RGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGEDPYY------------T------ 101 (323)
T ss_pred EEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC------------C------
Confidence 5689999999999999999876554 343 4999999999999999999999986542222 0
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT 392 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t 392 (524)
...+.++++.+.+. +.+.+.++ +...+++.++.|+++ |+.++.+|+||+|+++++.|+|+++
T Consensus 102 ------------~~~l~~l~~~i~~~-~~l~i~~~---~g~~~~e~l~~Lk~a--G~~~v~~glEs~~~~~~~~i~~~~s 163 (323)
T PRK07094 102 ------------DEKIADIIKEIKKE-LDVAITLS---LGERSYEEYKAWKEA--GADRYLLRHETADKELYAKLHPGMS 163 (323)
T ss_pred ------------HHHHHHHHHHHHcc-CCceEEEe---cCCCCHHHHHHHHHc--CCCEEEeccccCCHHHHHHhCCCCC
Confidence 24688888888775 34455443 345789999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
.++++++++.++++ |+.+.+++|+|+||||.+++.++++++++++++.+.+++|.|.||||++.
T Consensus 164 ~~~~~~~i~~l~~~--Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~ 227 (323)
T PRK07094 164 FENRIACLKDLKEL--GYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKD 227 (323)
T ss_pred HHHHHHHHHHHHHc--CCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCccc
Confidence 99999999999999 99999999999999999999999999999999999999999999999986
No 33
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.95 E-value=1.7e-26 Score=239.77 Aligned_cols=219 Identities=13% Similarity=0.209 Sum_probs=175.1
Q ss_pred CeEEEEEEcccCCccCcccccCCCCC-----ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCC
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRG-----RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGA 307 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G-----~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~ 307 (524)
....||.+ --|+.+|.||.++...+ .++.+..++|..|++.+....++.|+|.|.+.+..
T Consensus 6 ~~~lYiHi-PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L-------------- 70 (353)
T PRK05904 6 TKHLYIHI-PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCL-------------- 70 (353)
T ss_pred eeEEEEEe-CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccC--------------
Confidence 45577776 45999999999875422 13334455666666544323467777777554433
Q ss_pred ccccccCcccchhcccchhhHHHHHHHHHhhCC-ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 308 NWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP-EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
+ ...+.+|++.+.+..+ ...+.+. .+|..+++|.+++|+++ ||++|++|+||+++++|+.
T Consensus 71 ----~------------~~~l~~ll~~i~~~~~~~~eitiE-~nP~~lt~e~l~~lk~~--G~nrisiGvQS~~d~vL~~ 131 (353)
T PRK05904 71 ----N------------DQLLDILLSTIKPYVDNNCEFTIE-CNPELITQSQINLLKKN--KVNRISLGVQSMNNNILKQ 131 (353)
T ss_pred ----C------------HHHHHHHHHHHHHhcCCCCeEEEE-eccCcCCHHHHHHHHHc--CCCEEEEecccCCHHHHHH
Confidence 1 2457778888776532 3355554 78999999999999999 9999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCC
Q 041524 387 MRRGYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVP 465 (524)
Q Consensus 387 m~R~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~ 465 (524)
|+|+++.+++.++++.++++ |+. ++.|||+|+||||.+++++|++++.++++++++++.|+++|||++++. ...++
T Consensus 132 l~R~~~~~~~~~ai~~lr~~--G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~-~~~~~ 208 (353)
T PRK05904 132 LNRTHTIQDSKEAINLLHKN--GIYNISCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKY-HYTID 208 (353)
T ss_pred cCCCCCHHHHHHHHHHHHHc--CCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhc-CCCCC
Confidence 99999999999999999999 875 999999999999999999999999999999999999999999999974 34578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041524 466 EEVKQRRLTELIEAFRESTGQCY 488 (524)
Q Consensus 466 ~~~k~~Rl~~l~~~~~~~~~~~~ 488 (524)
++.+.+++..+.+.+.+..+..|
T Consensus 209 ~~~~~~~~~~~~~~L~~~Gy~~y 231 (353)
T PRK05904 209 EDKEAEQLNYIKAKFNKLNYKRY 231 (353)
T ss_pred hHHHHHHHHHHHHHHHHcCCcEE
Confidence 88888999888888877655554
No 34
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.94 E-value=1.3e-25 Score=235.85 Aligned_cols=218 Identities=17% Similarity=0.207 Sum_probs=174.5
Q ss_pred EEEEEEcccCCccCcccccCCCCC-ccc-c----CChHHHHHHHHHHHHC------CCcEEEEEeccCCCCCCccCCccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRG-RER-S----RPVESIVKEVDELWKE------GVKEVTLLGQNVNSYNDTSGMEKE 302 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G-~~R-s----r~~e~Iv~Ei~~l~~~------G~kei~l~d~n~~~y~~~~~~~~~ 302 (524)
..||.+ --|+++|+||.++...+ +.+ + +.++.|.+||+...+. .++.|+|.|.+++...
T Consensus 4 ~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~-------- 74 (375)
T PRK05628 4 GVYVHV-PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG-------- 74 (375)
T ss_pred EEEEEe-CCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC--------
Confidence 567776 46999999999865433 222 2 3488999999987653 2667888777765441
Q ss_pred cCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC---ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCc
Q 041524 303 VEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP---EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTG 379 (524)
Q Consensus 303 ~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~---~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESg 379 (524)
...+.+|++.+.+..+ ...+.+. .+|..++++.++.|+++ ||++|++|+||+
T Consensus 75 ----------------------~~~l~~ll~~i~~~~~~~~~~e~t~e-~~p~~i~~e~l~~l~~~--G~~rvslGvQS~ 129 (375)
T PRK05628 75 ----------------------AEGLARVLDAVRDTFGLAPGAEVTTE-ANPESTSPEFFAALRAA--GFTRVSLGMQSA 129 (375)
T ss_pred ----------------------HHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCCCCHHHHHHHHHc--CCCEEEEecccC
Confidence 2467888888876532 2344333 68999999999999999 999999999999
Q ss_pred CHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 380 NSAVLERMRRGYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 380 s~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
++++|+.|+|+++.+++.++++.+++. |+. ++.|||+|+||||.+++++|++++.+++++++.+|+++++|||++++
T Consensus 130 ~~~~L~~l~R~~s~~~~~~a~~~l~~~--g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~ 207 (375)
T PRK05628 130 APHVLAVLDRTHTPGRAVAAAREARAA--GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALAR 207 (375)
T ss_pred CHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHH
Confidence 999999999999999999999999999 887 99999999999999999999999999999999999999999999997
Q ss_pred cCCC----CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 041524 459 NYVD----DVPEEVKQRRLTELIEAFRESTGQCY 488 (524)
Q Consensus 459 ~~~~----~v~~~~k~~Rl~~l~~~~~~~~~~~~ 488 (524)
.+.. .+++++..+++..+.+.+.+..+.++
T Consensus 208 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~y 241 (375)
T PRK05628 208 RVRRGELPAPDDDVLADRYELADARLSAAGFDWY 241 (375)
T ss_pred HhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCee
Confidence 5432 34566777777777776665544433
No 35
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.94 E-value=8.1e-26 Score=237.60 Aligned_cols=213 Identities=17% Similarity=0.313 Sum_probs=170.0
Q ss_pred eEEEEEEcccCCccCcccccCCC--CCccccCChHHHHHHHHHHHHC---CCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFT--RGRERSRPVESIVKEVDELWKE---GVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~--~G~~Rsr~~e~Iv~Ei~~l~~~---G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
...||.|-- |+++|+||.++.. .++.+.+.++.|++||+.+... +++.|+|.|.+++..
T Consensus 2 ~~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l--------------- 65 (377)
T PRK08599 2 TSAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTAL--------------- 65 (377)
T ss_pred ceEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccC---------------
Confidence 357888875 9999999998753 4455678899999999876554 466676666554432
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhCCc---eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE---MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~---~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~ 385 (524)
....+.++++.+.+..+. ..+.+. .+|..++++.++.|+++ ||+++++|+||+++++|+
T Consensus 66 ---------------~~~~l~~ll~~i~~~~~~~~~~eit~e-~~p~~l~~e~l~~l~~~--G~~rvsiGvqS~~~~~l~ 127 (377)
T PRK08599 66 ---------------SAEQLERLLTAIHRNLPLSGLEEFTFE-ANPGDLTKEKLQVLKDS--GVNRISLGVQTFNDELLK 127 (377)
T ss_pred ---------------CHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCCCCHHHHHHHHHc--CCCEEEEecccCCHHHHH
Confidence 124688888888776432 245444 79999999999999999 999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCC-C
Q 041524 386 RMRRGYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD-D 463 (524)
Q Consensus 386 ~m~R~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~-~ 463 (524)
.|+|+++.+++.++++.++++ |+. ++.|||+|+||||.++++++++++.+++++++.+|+++|+|||+++..+.. .
T Consensus 128 ~l~r~~~~~~~~~~i~~l~~~--g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~ 205 (377)
T PRK08599 128 KIGRTHNEEDVYEAIANAKKA--GFDNISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGK 205 (377)
T ss_pred HcCCCCCHHHHHHHHHHHHHc--CCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCC
Confidence 999999999999999999999 875 889999999999999999999999999999999999999999999875432 1
Q ss_pred ---CCHHHHHHHHHHHHHHHHH
Q 041524 464 ---VPEEVKQRRLTELIEAFRE 482 (524)
Q Consensus 464 ---v~~~~k~~Rl~~l~~~~~~ 482 (524)
.+++...+..+.+.+.+.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~ 227 (377)
T PRK08599 206 LRLPGEDLEAEMYEYLMDEMEA 227 (377)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 2344444444444444443
No 36
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.94 E-value=3.2e-25 Score=224.11 Aligned_cols=195 Identities=21% Similarity=0.313 Sum_probs=168.9
Q ss_pred CCCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccc
Q 041524 231 KNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR 310 (524)
Q Consensus 231 ~~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~ 310 (524)
..+..+||.+++||+++|+||+++..+|+.++ ++++++++++.+.+.|+++|.|++.+...+.+ +
T Consensus 60 ~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~-~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d----------~---- 124 (302)
T TIGR00510 60 NHGTATFMILGDICTRRCPFCDVAHGRNPLPP-DPEEPAKLAETIKDMGLKYVVITSVDRDDLED----------G---- 124 (302)
T ss_pred CCCEEEEEecCcCcCCCCCcCCccCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEeecCCCccc----------c----
Confidence 45678999999999999999999988887665 57999999999999999999999877543311 0
Q ss_pred cccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC
Q 041524 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG 390 (524)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~ 390 (524)
+...+.+++++|.+..+...+++.++++.. +.+.++.|+++ |+..+..++|+. +++++.|+|+
T Consensus 125 -------------g~~~l~~li~~I~~~~p~i~Ievl~~d~~g-~~e~l~~l~~a--G~dv~~hnlEt~-~~l~~~vrr~ 187 (302)
T TIGR00510 125 -------------GASHLAECIEAIREKLPNIKIETLVPDFRG-NIAALDILLDA--PPDVYNHNLETV-ERLTPFVRPG 187 (302)
T ss_pred -------------cHHHHHHHHHHHHhcCCCCEEEEeCCcccC-CHHHHHHHHHc--Cchhhcccccch-HHHHHHhCCC
Confidence 124699999999987777778776655443 78899999999 999999999987 8999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeee-c-CCCChhcc
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS-M-RERTHAHR 458 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~s-p-~pGT~~~~ 458 (524)
++.++++++++.+++..||+.+.++||+|| |||+||+.+|++++++++++.+.+++|. | .+++|..+
T Consensus 188 ~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~ 256 (302)
T TIGR00510 188 ATYRWSLKLLERAKEYLPNLPTKSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKR 256 (302)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCcccc
Confidence 999999999999999999999999999999 9999999999999999999999999984 5 46666654
No 37
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.94 E-value=3.5e-25 Score=234.06 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=172.4
Q ss_pred CCccccCCCeEEEEEEcccCCccCcccccCCC-CCc-cc-------cCChHHHHHHHHHHHHC--CCcEEEEEeccCCCC
Q 041524 225 SPVRISKNSVTAFVSVMRGCNNMCSFCIVPFT-RGR-ER-------SRPVESIVKEVDELWKE--GVKEVTLLGQNVNSY 293 (524)
Q Consensus 225 ~p~r~~~~~~~a~v~isRGC~~~CsFC~vp~~-~G~-~R-------sr~~e~Iv~Ei~~l~~~--G~kei~l~d~n~~~y 293 (524)
||+.+.......||.+ --|+.+|.||.++.. .|+ .+ .+.++.+++||+..... +++.|+|.|.+.+..
T Consensus 2 ~~~~~~~~~~~lYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l 80 (400)
T PRK07379 2 PPVGFILLPTSAYIHI-PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLL 80 (400)
T ss_pred CCCCCCCCccEEEEEe-ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccC
Confidence 3444444455788887 669999999998753 221 11 22467888998875433 577888877665543
Q ss_pred CCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc---eEEEEecCCCCCCCHHHHHHHHcCCCCcc
Q 041524 294 NDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE---MRFRYTSPHPKDFPDELLYIMRDRPNVCK 370 (524)
Q Consensus 294 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~---~~ir~~s~~p~~~~~elL~~l~~~~~G~~ 370 (524)
....+.++++.+.+..+. ..+++. .+|..++++.++.|+++ |++
T Consensus 81 ------------------------------~~~~l~~ll~~i~~~~~~~~~~eit~E-~~P~~lt~e~l~~l~~~--Gvn 127 (400)
T PRK07379 81 ------------------------------SVEQLERILTTLDQRFGIAPDAEISLE-IDPGTFDLEQLQGYRSL--GVN 127 (400)
T ss_pred ------------------------------CHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHC--CCC
Confidence 124688888888775433 356555 78999999999999999 999
Q ss_pred eeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeee
Q 041524 371 YIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449 (524)
Q Consensus 371 ~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~s 449 (524)
+|++|+||+++++|+.|+|+++.+++.++++.++++ |+. ++.|||+|+||||.+++++|++++.++++++++++.++
T Consensus 128 rislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~--G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~ 205 (400)
T PRK07379 128 RVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQA--GIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLV 205 (400)
T ss_pred EEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecce
Confidence 999999999999999999999999999999999999 886 99999999999999999999999999999999999999
Q ss_pred cCCCChhcccCCC---CC-CHHHHHHHHHHHHHHHHH
Q 041524 450 MRERTHAHRNYVD---DV-PEEVKQRRLTELIEAFRE 482 (524)
Q Consensus 450 p~pGT~~~~~~~~---~v-~~~~k~~Rl~~l~~~~~~ 482 (524)
+.|||++++.+.. .. +++...+......+.+.+
T Consensus 206 ~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 242 (400)
T PRK07379 206 LEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (400)
T ss_pred ecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999975431 12 334444444444444443
No 38
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=99.94 E-value=3.2e-26 Score=193.84 Aligned_cols=98 Identities=46% Similarity=0.721 Sum_probs=90.9
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 78 ~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|+|++||||+||++|+|.|.+.|.+.||+. ++++++||+|+||||+|+++|+++++++|+++..++
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~-~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~------------- 66 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEI-VDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLK------------- 66 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCee-ecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhc-------------
Confidence 689999999999999999999999999997 899999999999999999999999999999883221
Q ss_pred cCCCCEEEEEcccccccHHHHHhhCCcceEEEC
Q 041524 158 SKHPPKIVVLGCMAERLKDKILDADKMVDVVCG 190 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ 190 (524)
+|+.+|+|+||+|+..++++.+..|.||+|+|
T Consensus 67 -~~~~~ivv~GC~aq~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 67 -KPGAKIVVTGCMAQRYGEELKKEFPEVDLVVG 98 (98)
T ss_pred -CCCCEEEEEeCccccChHHHHhhCCCeEEEeC
Confidence 38899999999999999999999999999986
No 39
>PRK12928 lipoyl synthase; Provisional
Probab=99.94 E-value=5.5e-25 Score=221.96 Aligned_cols=211 Identities=21% Similarity=0.280 Sum_probs=170.9
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
....+||.+++||+++|+||+++. |+.+++++++++++++.+.+.|+++|.+++.+...+.+ +
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~--g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d----------~----- 120 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK--GRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPD----------G----- 120 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccc----------c-----
Confidence 567899999999999999999986 66678999999999999999999999999866422200 0
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
+...+.++++.|.+..+..+++..++++.....+.|..|+++ |+..+..++|| ++++++.|+|++
T Consensus 121 ------------g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~A--g~~i~~hnlEt-~~~vl~~m~r~~ 185 (290)
T PRK12928 121 ------------GAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAA--KPDVFNHNLET-VPRLQKAVRRGA 185 (290)
T ss_pred ------------CHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHc--CchhhcccCcC-cHHHHHHhCCCC
Confidence 124689999999998887787765554332257788888888 88888888986 699999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeec--CCCChhcccCCCCCCHHHH
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM--RERTHAHRNYVDDVPEEVK 469 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp--~pGT~~~~~~~~~v~~~~k 469 (524)
+.+++++.++.+++..|++.+.++||+|| |||+||+.++++++++++++.+++|+|.+ ....|..+ -+.
T Consensus 186 t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~--------~~~ 256 (290)
T PRK12928 186 DYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQR--------YWT 256 (290)
T ss_pred CHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceee--------ccC
Confidence 99999999999999978899999999999 99999999999999999999999999976 33344432 234
Q ss_pred HHHHHHHHHHHHHH
Q 041524 470 QRRLTELIEAFRES 483 (524)
Q Consensus 470 ~~Rl~~l~~~~~~~ 483 (524)
.+.++++.+...++
T Consensus 257 ~~~f~~~~~~~~~~ 270 (290)
T PRK12928 257 PEEFEALGQIAREL 270 (290)
T ss_pred HHHHHHHHHHHHHc
Confidence 44555555544443
No 40
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=8.6e-25 Score=235.16 Aligned_cols=222 Identities=21% Similarity=0.313 Sum_probs=175.6
Q ss_pred CCeEEEEEEcccCCccCcccccCCC--CC-c-cccCChHHHHHHHHHHHHC------CCcEEEEEeccCCCCCCccCCcc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFT--RG-R-ERSRPVESIVKEVDELWKE------GVKEVTLLGQNVNSYNDTSGMEK 301 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~--~G-~-~Rsr~~e~Iv~Ei~~l~~~------G~kei~l~d~n~~~y~~~~~~~~ 301 (524)
...+.||.+ -.||.+|.||.++.. .+ + .....++.+++||+.+.+. ++..|+|.|.+.+..
T Consensus 162 ~~~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L-------- 232 (488)
T PRK08207 162 NEVSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSL-------- 232 (488)
T ss_pred CceEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCC--------
Confidence 456788886 679999999998764 12 1 1224589999999987532 456777777655433
Q ss_pred ccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 302 EVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 302 ~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
....+.+|++.+.+..+ ...+.++..+|+.++++.++.|+++ |+++|+||+|
T Consensus 233 ----------------------~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~--Gv~RISIGvQ 288 (488)
T PRK08207 233 ----------------------TAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKY--GVDRISINPQ 288 (488)
T ss_pred ----------------------CHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhc--CCCeEEEcCC
Confidence 12468888888876542 2245566569999999999999999 9999999999
Q ss_pred CcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 378 Sgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
|+++++|+.|+|+++.+++.++++.++++ |+ .++.|||+|+||||.+++.+|++++.++++++++++.+++.|||++
T Consensus 289 S~~d~vLk~igR~ht~e~v~~ai~~ar~~--Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l 366 (488)
T PRK08207 289 TMNDETLKAIGRHHTVEDIIEKFHLAREM--GFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRL 366 (488)
T ss_pred cCCHHHHHHhCCCCCHHHHHHHHHHHHhC--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChH
Confidence 99999999999999999999999999999 88 8999999999999999999999999999999999999999999999
Q ss_pred cccCCC-CC-CHHHHHHHHHHHHHHHHHHHHHHH
Q 041524 457 HRNYVD-DV-PEEVKQRRLTELIEAFRESTGQCY 488 (524)
Q Consensus 457 ~~~~~~-~v-~~~~k~~Rl~~l~~~~~~~~~~~~ 488 (524)
++.+.. .+ +.+...+.+....+.+++.....|
T Consensus 367 ~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~Y 400 (488)
T PRK08207 367 TENKEKYKVADREEIEKMMEEAEEWAKELGYVPY 400 (488)
T ss_pred HHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHhh
Confidence 975421 22 344444555556666655555554
No 41
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=6e-25 Score=235.46 Aligned_cols=193 Identities=19% Similarity=0.266 Sum_probs=162.1
Q ss_pred CeEEEEEEcccCCccCcccccCCC--CCccccCChHHHHHHHHHHHHC------CCcEEEEEeccCCCCCCccCCccccC
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFT--RGRERSRPVESIVKEVDELWKE------GVKEVTLLGQNVNSYNDTSGMEKEVE 304 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~--~G~~Rsr~~e~Iv~Ei~~l~~~------G~kei~l~d~n~~~y~~~~~~~~~~~ 304 (524)
....||.|=- |+++|+||.+... .+..+.+.++.+++||+...+. .++.|+|.|.+.+..
T Consensus 61 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L----------- 128 (449)
T PRK09058 61 KRLLYIHIPF-CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTAL----------- 128 (449)
T ss_pred ceEEEEEeCC-cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccC-----------
Confidence 4578898844 9999999997543 2234567899999999987652 356677777655443
Q ss_pred CCCccccccCcccchhcccchhhHHHHHHHHHhhCC---ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCH
Q 041524 305 PGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP---EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNS 381 (524)
Q Consensus 305 ~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~---~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~ 381 (524)
....+.+|++.+.+..+ ...+.+. .+|..++++.++.|+++ ||++|+||+||+++
T Consensus 129 -------------------~~~~l~~ll~~i~~~~~l~~~~eitiE-~~p~~~t~e~l~~l~~a--GvnRiSiGVQSf~d 186 (449)
T PRK09058 129 -------------------SAEDLARLITALREYLPLAPDCEITLE-GRINGFDDEKADAALDA--GANRFSIGVQSFNT 186 (449)
T ss_pred -------------------CHHHHHHHHHHHHHhCCCCCCCEEEEE-eCcCcCCHHHHHHHHHc--CCCEEEecCCcCCH
Confidence 12467888888877544 2345554 78999999999999999 99999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccC
Q 041524 382 AVLERMRRGYTREAYLDLVQKIRQIIPD-VGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNY 460 (524)
Q Consensus 382 ~vL~~m~R~~t~e~~~~~v~~ir~~~pg-i~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~ 460 (524)
++|+.|+|+++.+++.++++.+++. | ..++.|||+|+||||.++++++++++.+++++++.+|.|+++|||++++.+
T Consensus 187 ~vLk~lgR~~~~~~~~~~i~~l~~~--g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~ 264 (449)
T PRK09058 187 QVRRRAGRKDDREEVLARLEELVAR--DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAV 264 (449)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhC--CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHH
Confidence 9999999999999999999999999 7 689999999999999999999999999999999999999999999999754
Q ss_pred C
Q 041524 461 V 461 (524)
Q Consensus 461 ~ 461 (524)
.
T Consensus 265 ~ 265 (449)
T PRK09058 265 E 265 (449)
T ss_pred H
Confidence 3
No 42
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=4.4e-25 Score=231.85 Aligned_cols=191 Identities=17% Similarity=0.277 Sum_probs=157.5
Q ss_pred EEEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHH-CCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWK-EGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~-~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
..||.+=. |+++|+||.++...++ .+.+.++.|++|++.+.. .+++.|+|.|.+.+...
T Consensus 5 ~lYiHiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~----------------- 66 (374)
T PRK05799 5 SLYIHIPF-CKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLS----------------- 66 (374)
T ss_pred EEEEEeCC-ccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCC-----------------
Confidence 57777744 9999999999876554 334569999999987643 25778888776655331
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhC--CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEF--PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~--~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
...+..|++.+.... +...+.+. .+|..++++.++.|+++ ||++|+||+||+++++|+.|+|
T Consensus 67 -------------~~~l~~L~~~i~~~~~~~~~eitie-~~p~~~t~e~l~~l~~~--G~~rvsiGvqS~~d~~L~~l~R 130 (374)
T PRK05799 67 -------------LEALEILKETIKKLNKKEDLEFTVE-GNPGTFTEEKLKILKSM--GVNRLSIGLQAWQNSLLKYLGR 130 (374)
T ss_pred -------------HHHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHc--CCCEEEEECccCCHHHHHHcCC
Confidence 124556666665421 22344444 68999999999999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCC
Q 041524 390 GYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYV 461 (524)
Q Consensus 390 ~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~ 461 (524)
+++.+++.++++.++++ |+. ++.|+|+|+||||.++++++++++.+++++++++|.++++|||++++.+.
T Consensus 131 ~~~~~~~~~ai~~l~~~--g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~ 201 (374)
T PRK05799 131 IHTFEEFLENYKLARKL--GFNNINVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYE 201 (374)
T ss_pred CCCHHHHHHHHHHHHHc--CCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHh
Confidence 99999999999999999 875 89999999999999999999999999999999999999999999997554
No 43
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=2.1e-24 Score=224.40 Aligned_cols=191 Identities=12% Similarity=0.187 Sum_probs=159.2
Q ss_pred EEEEEcccCCccCcccccCCCCC--ccccCChHHHHHHHHHHHHC----CCcEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG--RERSRPVESIVKEVDELWKE----GVKEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G--~~Rsr~~e~Iv~Ei~~l~~~----G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
.||.+ --|+.+|.||.++...+ ..+.+.++.+++||+...+. +++.|+|.|.+++..
T Consensus 3 lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l---------------- 65 (350)
T PRK08446 3 LYIHI-PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTV---------------- 65 (350)
T ss_pred EEEEe-CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccC----------------
Confidence 46665 55999999999865522 24556899999999976532 677888877665543
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhh-CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLE-FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR 388 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~-~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~ 388 (524)
....+.+|++.+... .....+.+. .+|..++++.++.|+++ |+++|+||+||+++++|+.|+
T Consensus 66 --------------~~~~l~~ll~~i~~~~~~~~eitiE-~nP~~~~~e~l~~l~~~--GvnRiSiGvQS~~~~~L~~lg 128 (350)
T PRK08446 66 --------------SAKFYEPIFEIISPYLSKDCEITTE-ANPNSATKAWLKGMKNL--GVNRISFGVQSFNEDKLKFLG 128 (350)
T ss_pred --------------CHHHHHHHHHHHHHhcCCCceEEEE-eCCCCCCHHHHHHHHHc--CCCEEEEecccCCHHHHHHcC
Confidence 024577777777664 223455554 68999999999999999 999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCC
Q 041524 389 RGYTREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD 462 (524)
Q Consensus 389 R~~t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~ 462 (524)
|+++.+++.++++.++++ |+ .++.|+|+|+||||.++++++++++.++++++++++.|++.|||++++....
T Consensus 129 R~~~~~~~~~ai~~lr~~--g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~ 201 (350)
T PRK08446 129 RIHSQKQIIKAIENAKKA--GFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHK 201 (350)
T ss_pred CCCCHHHHHHHHHHHHHc--CCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhc
Confidence 999999999999999999 88 5899999999999999999999999999999999999999999999975543
No 44
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=8.9e-24 Score=222.12 Aligned_cols=214 Identities=16% Similarity=0.121 Sum_probs=171.1
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc-c-ccCChHHHHHHHHHHHHC----CCcEEEEEeccCCCCCCccCCccccCCCC
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR-E-RSRPVESIVKEVDELWKE----GVKEVTLLGQNVNSYNDTSGMEKEVEPGA 307 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~-~-Rsr~~e~Iv~Ei~~l~~~----G~kei~l~d~n~~~y~~~~~~~~~~~~g~ 307 (524)
...||.+ --|.++|+||.+...... . ..+.++.+++||+...+. .++.|+|.|.+.+..
T Consensus 5 ~~lYiHI-PFC~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l-------------- 69 (380)
T PRK09057 5 FGLYVHW-PFCLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLM-------------- 69 (380)
T ss_pred eEEEEEe-CCcCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccC--------------
Confidence 3577776 669999999998654321 1 234788999999976543 466777776554433
Q ss_pred ccccccCcccchhcccchhhHHHHHHHHHhhCCc---eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHH
Q 041524 308 NWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE---MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVL 384 (524)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~---~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL 384 (524)
....+.+|++.+.+..+. ..+.+. .+|..++.+.|+.|+++ |+++|++|+||+++++|
T Consensus 70 ----------------~~~~L~~ll~~i~~~f~~~~~~eit~E-~~P~~i~~e~L~~l~~~--GvnrislGvQS~~d~vL 130 (380)
T PRK09057 70 ----------------QPETVAALLDAIARLWPVADDIEITLE-ANPTSVEAGRFRGYRAA--GVNRVSLGVQALNDADL 130 (380)
T ss_pred ----------------CHHHHHHHHHHHHHhCCCCCCccEEEE-ECcCcCCHHHHHHHHHc--CCCEEEEecccCCHHHH
Confidence 124688888888776443 245554 68999999999999999 99999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCC--
Q 041524 385 ERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD-- 462 (524)
Q Consensus 385 ~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~-- 462 (524)
+.|+|+++.+++.++++.++++ +..++.|+|+|+||||.++++++++.+.+++++++.++++++.|||++++.+..
T Consensus 131 ~~l~R~~~~~~~~~ai~~~~~~--~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~ 208 (380)
T PRK09057 131 RFLGRLHSVAEALAAIDLAREI--FPRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGK 208 (380)
T ss_pred HHcCCCCCHHHHHHHHHHHHHh--CccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCC
Confidence 9999999999999999999999 888999999999999999999999999999999999999999999999975432
Q ss_pred --CCCHHHHHHHHHHHHHHHHHH
Q 041524 463 --DVPEEVKQRRLTELIEAFRES 483 (524)
Q Consensus 463 --~v~~~~k~~Rl~~l~~~~~~~ 483 (524)
..+++...+.+..+.+.+.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~L~~~ 231 (380)
T PRK09057 209 LILPDEDLAADLYELTQEITAAA 231 (380)
T ss_pred CCCCChHHHHHHHHHHHHHHHHc
Confidence 123455556666666666544
No 45
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.92 E-value=1e-23 Score=220.36 Aligned_cols=210 Identities=12% Similarity=0.174 Sum_probs=162.5
Q ss_pred EEEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHH-CC---CcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWK-EG---VKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~-~G---~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
..||.+ --|+.+|.||.+...... ......+.+++||+...+ .| ++.|+|.|.+.+..
T Consensus 2 ~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l--------------- 65 (360)
T TIGR00539 2 SLYIHI-PFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTL--------------- 65 (360)
T ss_pred EEEEEe-CCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcC---------------
Confidence 356666 449999999998654222 122357788888876543 24 67788777655433
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhC---CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEF---PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~---~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~ 385 (524)
....+.++++.+.+.. ....+.+. .+|..++++.++.|+++ ||++|++|+||+++++|+
T Consensus 66 ---------------~~~~l~~ll~~i~~~~~~~~~~eitie-~np~~lt~e~l~~l~~~--Gv~risiGvqS~~~~~l~ 127 (360)
T TIGR00539 66 ---------------SVEAFERLFESIYQHASLSDDCEITTE-ANPELITAEWCKGLKGA--GINRLSLGVQSFRDDKLL 127 (360)
T ss_pred ---------------CHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCCCCHHHHHHHHHc--CCCEEEEecccCChHHHH
Confidence 0245777887776543 23455555 69999999999999999 999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCC
Q 041524 386 RMRRGYTREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDV 464 (524)
Q Consensus 386 ~m~R~~t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v 464 (524)
.|+|+++.+++.++++.++++ |+ .++.|||+|+||||.+++.++++++.++++++++++.|+|.|||++++......
T Consensus 128 ~lgR~~~~~~~~~ai~~l~~~--G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~ 205 (360)
T TIGR00539 128 FLGRQHSAKNIAPAIETALKS--GIENISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLP 205 (360)
T ss_pred HhCCCCCHHHHHHHHHHHHHc--CCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCc
Confidence 999999999999999999999 88 589999999999999999999999999999999999999999999997544322
Q ss_pred CHHHHHHHHHHHHHHH
Q 041524 465 PEEVKQRRLTELIEAF 480 (524)
Q Consensus 465 ~~~~k~~Rl~~l~~~~ 480 (524)
.++...+......+.+
T Consensus 206 ~~~~~~~~~~~~~~~L 221 (360)
T TIGR00539 206 DDDSCAHFDEVVREIL 221 (360)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3333333334444433
No 46
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.92 E-value=6.6e-24 Score=217.04 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=153.3
Q ss_pred eEEEEEEcccCCc----cCcccccCCCCCccccCChHHHHHHHHHHHHC-CCcE----E-EEEeccCCCCCCccCCcccc
Q 041524 234 VTAFVSVMRGCNN----MCSFCIVPFTRGRERSRPVESIVKEVDELWKE-GVKE----V-TLLGQNVNSYNDTSGMEKEV 303 (524)
Q Consensus 234 ~~a~v~isRGC~~----~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G~ke----i-~l~d~n~~~y~~~~~~~~~~ 303 (524)
....|.++||||+ +|+||.... +.+|.++++.|+++|+.+.+. +.+. + .|+++.|....
T Consensus 15 ~~~~i~~srGC~~~~~g~C~FC~~~~--~~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~--------- 83 (313)
T TIGR01210 15 SLTIILRTRGCYWAREGGCYMCGYLA--DSSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDR--------- 83 (313)
T ss_pred eEEEEEeCCCCCCCCCCcCccCCCCC--CCCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcC---------
Confidence 4456788999999 599997643 335678999999999998865 4331 1 24444443220
Q ss_pred CCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcc-eeecCcCCcCHH
Q 041524 304 EPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCK-YIHLPAQTGNSA 382 (524)
Q Consensus 304 ~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~-~i~igiESgs~~ 382 (524)
.+ ....+.++++.+.+.....++.+. .+|+.++++.|+.|+++ ||+ .|.+|+||+|++
T Consensus 84 ------~~------------~~~~~~~i~~~l~~~~~~~~i~~e-srpd~i~~e~L~~l~~a--G~~~~v~iG~ES~~d~ 142 (313)
T TIGR01210 84 ------EV------------PKETRNYIFEKIAQRDNLKEVVVE-SRPEFIDEEKLEELRKI--GVNVEVAVGLETANDR 142 (313)
T ss_pred ------cC------------CHHHHHHHHHHHHhcCCcceEEEE-eCCCcCCHHHHHHHHHc--CCCEEEEEecCcCCHH
Confidence 00 023467788888764323455554 69999999999999999 998 899999999999
Q ss_pred HHh-hhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCC----CCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 383 VLE-RMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCG----ETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 383 vL~-~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~Pg----ET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
+|+ .|+|+++.+++.++++.++++ |+.+.++||+|+|+ |+.+++.++++++..++ +++.++++++.|||+++
T Consensus 143 ~L~~~inKg~t~~~~~~ai~~~~~~--Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~ 219 (313)
T TIGR01210 143 IREKSINKGSTFEDFIRAAELARKY--GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVE 219 (313)
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHc--CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHH
Confidence 995 899999999999999999999 99999999999996 56678888999999998 99999999999999987
Q ss_pred ccCC
Q 041524 458 RNYV 461 (524)
Q Consensus 458 ~~~~ 461 (524)
+.+.
T Consensus 220 ~~~~ 223 (313)
T TIGR01210 220 FLWN 223 (313)
T ss_pred HHHH
Confidence 6553
No 47
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.92 E-value=1.6e-23 Score=213.42 Aligned_cols=193 Identities=18% Similarity=0.239 Sum_probs=153.4
Q ss_pred EEEEEEcccCCc--------cCcccccCCCCCccc---cCChHHHHHHHHHHHHC--CCcE--EEEEeccCCCCCCccCC
Q 041524 235 TAFVSVMRGCNN--------MCSFCIVPFTRGRER---SRPVESIVKEVDELWKE--GVKE--VTLLGQNVNSYNDTSGM 299 (524)
Q Consensus 235 ~a~v~isRGC~~--------~CsFC~vp~~~G~~R---sr~~e~Iv~Ei~~l~~~--G~ke--i~l~d~n~~~y~~~~~~ 299 (524)
...|..+-+||| .|+||.... .++++ .++.++|.++|+...+. ..+. ++|.|.+.+..
T Consensus 19 k~~~~~g~~cpnrdg~~~~~gC~FC~~~~-~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l------ 91 (302)
T TIGR01212 19 KITLHGGFSCPNRDGTKGRGGCTFCNDAS-RPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYA------ 91 (302)
T ss_pred EeecCCCCCCCCCCCCCCCCCcccCCCCC-CccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCC------
Confidence 455677899998 699998733 34555 46777777777766543 1222 55554332221
Q ss_pred ccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcC-CCCc-ceeecCcC
Q 041524 300 EKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDR-PNVC-KYIHLPAQ 377 (524)
Q Consensus 300 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~-~~G~-~~i~igiE 377 (524)
....+.++++.+.+......+.+. .+|+.++++.+++|++. ..|| .++++|+|
T Consensus 92 ------------------------~~~~L~~l~~~i~~~~~~~~isi~-trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQ 146 (302)
T TIGR01212 92 ------------------------PVEVLKEMYEQALSYDDVVGLSVG-TRPDCVPDEVLDLLAEYVERGYEVWVELGLQ 146 (302)
T ss_pred ------------------------CHHHHHHHHHHHhCCCCEEEEEEE-ecCCcCCHHHHHHHHHhhhCCceEEEEEccC
Confidence 124688888888774333455554 68999999988888754 2389 68999999
Q ss_pred CcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 378 TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 378 Sgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
|+++++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.+++.+|++++.+++++.+.++++.|.|||+++
T Consensus 147 S~~d~~L~~i~Rg~t~~~~~~ai~~l~~~--gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~ 224 (302)
T TIGR01212 147 TAHDKTLKKINRGHDFACYVDAVKRARKR--GIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMA 224 (302)
T ss_pred cCCHHHHHHHcCcChHHHHHHHHHHHHHc--CCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHH
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 041524 458 RNYV 461 (524)
Q Consensus 458 ~~~~ 461 (524)
+.+.
T Consensus 225 ~~~~ 228 (302)
T TIGR01212 225 KMYE 228 (302)
T ss_pred HHHH
Confidence 8653
No 48
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=1.6e-23 Score=221.12 Aligned_cols=217 Identities=12% Similarity=0.151 Sum_probs=169.3
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc-----cccCChHHHHHHHHHHHHC----CCcEEEEEeccCCCCCCccCCccccC
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR-----ERSRPVESIVKEVDELWKE----GVKEVTLLGQNVNSYNDTSGMEKEVE 304 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~-----~Rsr~~e~Iv~Ei~~l~~~----G~kei~l~d~n~~~y~~~~~~~~~~~ 304 (524)
...||.+ --|+.+|.||.++..... ...+..+.+.+||+..... .++.|+|.|.+.+..
T Consensus 20 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L----------- 87 (394)
T PRK08898 20 LSLYVHF-PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLL----------- 87 (394)
T ss_pred eEEEEEe-CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCC-----------
Confidence 4677776 559999999998754221 1245788999999866432 366777776555443
Q ss_pred CCCccccccCcccchhcccchhhHHHHHHHHHhhCCc---eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCH
Q 041524 305 PGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE---MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNS 381 (524)
Q Consensus 305 ~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~---~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~ 381 (524)
....+.+|++.+.+..+. ..+.+. .+|..++++.|+.|+++ |+++|+||+||+++
T Consensus 88 -------------------~~~~L~~ll~~i~~~~~~~~~~eit~E-~~p~~~~~e~L~~l~~~--GvnrisiGvQS~~~ 145 (394)
T PRK08898 88 -------------------SAAGLDRLLSDVRALLPLDPDAEITLE-ANPGTFEAEKFAQFRAS--GVNRLSIGIQSFND 145 (394)
T ss_pred -------------------CHHHHHHHHHHHHHhCCCCCCCeEEEE-ECCCCCCHHHHHHHHHc--CCCeEEEecccCCH
Confidence 124688888888876543 356555 68999999999999999 99999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCC
Q 041524 382 AVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYV 461 (524)
Q Consensus 382 ~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~ 461 (524)
++|+.|+|+++.+++.++++.+++. +..++.|+|+|+||||.+++.++++++.++++++++++.|++.|||++++..
T Consensus 146 ~~L~~l~R~~~~~~~~~~i~~~~~~--~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~- 222 (394)
T PRK08898 146 AHLKALGRIHDGAEARAAIEIAAKH--FDNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFP- 222 (394)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHh--CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhcc-
Confidence 9999999999999999999999998 6679999999999999999999999999999999999999999999999743
Q ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHHH
Q 041524 462 DDVPEE-VKQRRLTELIEAFRESTGQC 487 (524)
Q Consensus 462 ~~v~~~-~k~~Rl~~l~~~~~~~~~~~ 487 (524)
..+|.. ...+....+.+.+.+..+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 249 (394)
T PRK08898 223 PALPDDDASADMQDWIEARLAAAGYAH 249 (394)
T ss_pred CCCCChHHHHHHHHHHHHHHHHcCCch
Confidence 344443 33334444444444433333
No 49
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=2.6e-23 Score=218.80 Aligned_cols=218 Identities=11% Similarity=0.148 Sum_probs=171.0
Q ss_pred CCCeEEEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHC----CCcEEEEEeccCCCCCCccCCccccC
Q 041524 231 KNSVTAFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKE----GVKEVTLLGQNVNSYNDTSGMEKEVE 304 (524)
Q Consensus 231 ~~~~~a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~----G~kei~l~d~n~~~y~~~~~~~~~~~ 304 (524)
......||.+ --|..+|.||.+...... ......+.+.+||+...+. .++.|+|.|.+.+..
T Consensus 9 ~~~~~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l----------- 76 (390)
T PRK06582 9 ANDLSIYIHW-PFCLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLM----------- 76 (390)
T ss_pred CCCeEEEEEe-CCCcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccC-----------
Confidence 3455788886 889999999998654332 1234578888899876542 366777766554332
Q ss_pred CCCccccccCcccchhcccchhhHHHHHHHHHhhC---CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCH
Q 041524 305 PGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF---PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNS 381 (524)
Q Consensus 305 ~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~---~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~ 381 (524)
....+.++++.+.+.. +...+.+. .+|..++++.++.|+++ |+++|++|+||+++
T Consensus 77 -------------------~~~~l~~ll~~i~~~~~~~~~~eitiE-~nP~~~~~e~l~~l~~~--GvnRiSiGvQS~~d 134 (390)
T PRK06582 77 -------------------NPVIVEGIINKISNLAIIDNQTEITLE-TNPTSFETEKFKAFKLA--GINRVSIGVQSLKE 134 (390)
T ss_pred -------------------CHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHC--CCCEEEEECCcCCH
Confidence 0245777787777643 23456665 69999999999999999 99999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCC
Q 041524 382 AVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYV 461 (524)
Q Consensus 382 ~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~ 461 (524)
++|+.|+|+++.+++.++++.+++. +..++.|+|+|+||||.++++++++.+.+++++++.++.+++.|||++++.+.
T Consensus 135 ~~L~~lgR~h~~~~~~~ai~~~~~~--~~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~ 212 (390)
T PRK06582 135 DDLKKLGRTHDCMQAIKTIEAANTI--FPRVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFK 212 (390)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHh--CCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHh
Confidence 9999999999999999999999998 77899999999999999999999999999999999999999999999997553
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHH
Q 041524 462 DD----VPEEVKQRRLTELIEAFREST 484 (524)
Q Consensus 462 ~~----v~~~~k~~Rl~~l~~~~~~~~ 484 (524)
.. .+++...+.+....+.+.+..
T Consensus 213 ~g~~~~p~~~~~~~~~~~~~~~L~~~G 239 (390)
T PRK06582 213 EGNLILPHSDAAAEMYEWTNHYLESKK 239 (390)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcC
Confidence 21 234455555555555555433
No 50
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=2.3e-23 Score=218.09 Aligned_cols=190 Identities=15% Similarity=0.208 Sum_probs=152.0
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc-c-ccCChHHHHHH-HHHHHHC----CCcEEEEEeccCCCCCCccCCccccCCC
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR-E-RSRPVESIVKE-VDELWKE----GVKEVTLLGQNVNSYNDTSGMEKEVEPG 306 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~-~-Rsr~~e~Iv~E-i~~l~~~----G~kei~l~d~n~~~y~~~~~~~~~~~~g 306 (524)
...||.+ --|+++|.||.+...... . ....++.+++| ++...+. .++.|+|.|.+.+..
T Consensus 7 ~~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l------------- 72 (370)
T PRK06294 7 LALYIHI-PFCTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLV------------- 72 (370)
T ss_pred eEEEEEe-CCccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccC-------------
Confidence 4678876 669999999987554211 1 11235667777 5544321 345566655443322
Q ss_pred CccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 307 ANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
....+.+|++.+... +...+.+. .+|..++++.++.|+++ |+++++||+||+++++|+.
T Consensus 73 -----------------~~~~l~~ll~~i~~~-~~~eit~E-~~P~~~~~~~l~~l~~~--G~nrislGvQS~~~~~L~~ 131 (370)
T PRK06294 73 -----------------PPALIQDILKTLEAP-HATEITLE-ANPENLSESYIRALALT--GINRISIGVQTFDDPLLKL 131 (370)
T ss_pred -----------------CHHHHHHHHHHHHhC-CCCeEEEE-eCCCCCCHHHHHHHHHC--CCCEEEEccccCCHHHHHH
Confidence 124578888887653 34566665 79999999999999999 9999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccC
Q 041524 387 MRRGYTREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNY 460 (524)
Q Consensus 387 m~R~~t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~ 460 (524)
|+|+++.+++.++++.+++. |+ .++.|+|+|+||||.++++++++++.+++++++++|.+++.|||+++++.
T Consensus 132 l~R~~~~~~~~~ai~~~~~~--g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~ 204 (370)
T PRK06294 132 LGRTHSSSKAIDAVQECSEH--GFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHR 204 (370)
T ss_pred cCCCCCHHHHHHHHHHHHHc--CCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHH
Confidence 99999999999999999999 88 49999999999999999999999999999999999999999999998743
No 51
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.91 E-value=2.3e-23 Score=222.32 Aligned_cols=213 Identities=14% Similarity=0.207 Sum_probs=166.1
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCc---cccCChHHHHHHHHHHHHC----CCcEEEEEeccCCCCCCccCCccccC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGR---ERSRPVESIVKEVDELWKE----GVKEVTLLGQNVNSYNDTSGMEKEVE 304 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~---~Rsr~~e~Iv~Ei~~l~~~----G~kei~l~d~n~~~y~~~~~~~~~~~ 304 (524)
.....||.| --|+++|+||.++...+. ...+.++.|++||+.+.++ .+..|.|.|.+.+..
T Consensus 38 ~~~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l----------- 105 (430)
T PRK08208 38 DALSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLL----------- 105 (430)
T ss_pred CceEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccC-----------
Confidence 345789998 559999999998765442 2345789999999987654 244566655433322
Q ss_pred CCCccccccCcccchhcccchhhHHHHHHHHHhhCCc----eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcC
Q 041524 305 PGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE----MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGN 380 (524)
Q Consensus 305 ~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~----~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs 380 (524)
....+.+|++.+.+..+. ..+.+. .+|..++++.++.|+++ ||++|+||+||++
T Consensus 106 -------------------~~~~l~~Ll~~i~~~~~~~~~~~eitiE-~~P~~lt~e~l~~l~~~--G~~rvslGvQS~~ 163 (430)
T PRK08208 106 -------------------NAAELEKLFDSVERVLGVDLGNIPKSVE-TSPATTTAEKLALLAAR--GVNRLSIGVQSFH 163 (430)
T ss_pred -------------------CHHHHHHHHHHHHHhCCCCCCCceEEEE-eCcCcCCHHHHHHHHHc--CCCEEEEecccCC
Confidence 124577888888765432 234444 67999999999999999 9999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhccc
Q 041524 381 SAVLERMRRGYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRN 459 (524)
Q Consensus 381 ~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~ 459 (524)
+++|+.|+|+++.+++.++++.++++ |+. ++.|||+|+||||.++++++++++.+++++++.++++++.|||++++.
T Consensus 164 ~~~L~~l~R~~~~~~~~~ai~~l~~~--g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~ 241 (430)
T PRK08208 164 DSELHALHRPQKRADVHQALEWIRAA--GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRR 241 (430)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHc--CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchh
Confidence 99999999999999999999999999 885 689999999999999999999999999999999999999999999874
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 041524 460 YVDDVPEEVKQRRLTELIEAFRE 482 (524)
Q Consensus 460 ~~~~v~~~~k~~Rl~~l~~~~~~ 482 (524)
.. -..+.+.+......+.+.+
T Consensus 242 ~~--~~~~~~~~m~~~~~~~L~~ 262 (430)
T PRK08208 242 AR--AWDDQRLSLYRLARDLLLE 262 (430)
T ss_pred cC--CCHHHHHHHHHHHHHHHHH
Confidence 32 1233334444444444433
No 52
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.91 E-value=8.5e-23 Score=214.49 Aligned_cols=212 Identities=12% Similarity=0.186 Sum_probs=166.3
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc--c-ccCChHHHHHHHHHHHH----CCCcEEEEEeccCCCCCCccCCccccCCC
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR--E-RSRPVESIVKEVDELWK----EGVKEVTLLGQNVNSYNDTSGMEKEVEPG 306 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~--~-Rsr~~e~Iv~Ei~~l~~----~G~kei~l~d~n~~~y~~~~~~~~~~~~g 306 (524)
...||.+= -|+.+|.||.+.....+ . .....+.+++||+.... .+++.|+|.|.+.+...
T Consensus 7 ~~lYiHiP-FC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~------------ 73 (378)
T PRK05660 7 LSLYIHIP-WCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFS------------ 73 (378)
T ss_pred eEEEEEeC-CccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCC------------
Confidence 36788774 49999999998643221 1 12247778888875322 36778888876655431
Q ss_pred CccccccCcccchhcccchhhHHHHHHHHHhhCC---ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHH
Q 041524 307 ANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP---EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAV 383 (524)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~---~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~v 383 (524)
...+.++++.+.+..+ ...+.+. .+|..++++.++.|+++ |+++|+||+||+++++
T Consensus 74 ------------------~~~l~~ll~~l~~~~~~~~~~eit~e-~np~~l~~e~l~~Lk~~--Gv~risiGvqS~~~~~ 132 (378)
T PRK05660 74 ------------------AEAIQRLLDGVRARLPFAPDAEITME-ANPGTVEADRFVGYQRA--GVNRISIGVQSFSEEK 132 (378)
T ss_pred ------------------HHHHHHHHHHHHHhCCCCCCcEEEEE-eCcCcCCHHHHHHHHHc--CCCEEEeccCcCCHHH
Confidence 2468888888877543 2356555 68999999999999999 9999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCC
Q 041524 384 LERMRRGYTREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD 462 (524)
Q Consensus 384 L~~m~R~~t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~ 462 (524)
|+.|+|+++.+++.++++.++++ |+ .++.|+|+|+||||.++++++++++.+++++++.+++++++|||+++++. .
T Consensus 133 L~~l~r~~~~~~~~~ai~~~~~~--G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~-~ 209 (378)
T PRK05660 133 LKRLGRIHGPDEAKRAAKLAQGL--GLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRP-P 209 (378)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHc--CCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccC-C
Confidence 99999999999999999999999 88 47999999999999999999999999999999999999999999999743 3
Q ss_pred CCC-HHHHHHHHHHHHHHHHH
Q 041524 463 DVP-EEVKQRRLTELIEAFRE 482 (524)
Q Consensus 463 ~v~-~~~k~~Rl~~l~~~~~~ 482 (524)
.+| ++...+......+.+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~L~~ 230 (378)
T PRK05660 210 VLPDDDALWDIFEQGHQLLTA 230 (378)
T ss_pred CCcCHHHHHHHHHHHHHHHHH
Confidence 344 33444444444444444
No 53
>PRK06256 biotin synthase; Validated
Probab=99.90 E-value=2.3e-22 Score=208.33 Aligned_cols=194 Identities=12% Similarity=0.159 Sum_probs=158.5
Q ss_pred cccCCccCcccccCCCCC----ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 241 MRGCNNMCSFCIVPFTRG----RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 241 sRGC~~~CsFC~vp~~~G----~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
++||+++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++...... ..
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~------------~~--------- 123 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPS------------GK--------- 123 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC------------ch---------
Confidence 899999999999876543 36778999999999999999999988876432211 00
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHH
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~ 396 (524)
....+.++++.+.+. ..+.+ . .+...++++.++.|+++ |+..+++++|| ++++++.|+++++.+++
T Consensus 124 -------~~~~~~e~i~~i~~~-~~i~~--~-~~~g~l~~e~l~~Lkea--G~~~v~~~lEt-s~~~~~~i~~~~t~~~~ 189 (336)
T PRK06256 124 -------EVDQVVEAVKAIKEE-TDLEI--C-ACLGLLTEEQAERLKEA--GVDRYNHNLET-SRSYFPNVVTTHTYEDR 189 (336)
T ss_pred -------HHHHHHHHHHHHHhc-CCCcE--E-ecCCcCCHHHHHHHHHh--CCCEEecCCcc-CHHHHhhcCCCCCHHHH
Confidence 013577777777664 33333 2 23445899999999999 99999999999 99999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLT 474 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~ 474 (524)
+++++.++++ |+.+.+++|+|+ |||.+|+.+++.++++++++.+.++.|.|.||||++.. +.++.....+.+.
T Consensus 190 i~~i~~a~~~--Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~--~~~~~~e~l~~ia 262 (336)
T PRK06256 190 IDTCEMVKAA--GIEPCSGGIIGM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENH--PELTPLECLKTIA 262 (336)
T ss_pred HHHHHHHHHc--CCeeccCeEEeC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCC--CCCCHHHHHHHHH
Confidence 9999999999 999999999998 99999999999999999999999999999999999752 3455554444443
No 54
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.90 E-value=5.9e-22 Score=201.58 Aligned_cols=202 Identities=13% Similarity=0.183 Sum_probs=156.3
Q ss_pred EEEEEE-cccCCccCcccccCCCC---C-ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 235 TAFVSV-MRGCNNMCSFCIVPFTR---G-RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 235 ~a~v~i-sRGC~~~CsFC~vp~~~---G-~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
.+.+.+ |+||+++|.||..+... + .++.+++++|++|++.+.+.|++.+.+++......
T Consensus 29 ~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~---------------- 92 (296)
T TIGR00433 29 CTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPK---------------- 92 (296)
T ss_pred EEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC----------------
Confidence 345565 99999999999986643 2 36789999999999999989999988765433211
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
...+.++++.+.+......+.+. .+...+++|.++.|+++ |+..+.+|+| +++++++.+++
T Consensus 93 ---------------~~~~~~~~~~i~~~~~~~~i~~~-~~~g~~~~e~l~~Lk~a--G~~~v~i~~E-~~~~~~~~i~~ 153 (296)
T TIGR00433 93 ---------------DREFMEYVEAMVQIVEEMGLKTC-ATLGLLDPEQAKRLKDA--GLDYYNHNLD-TSQEFYSNIIS 153 (296)
T ss_pred ---------------hHHHHHHHHHHHHHHHhCCCeEE-ecCCCCCHHHHHHHHHc--CCCEEEEccc-CCHHHHhhccC
Confidence 11223344443332111122222 34457899999999999 9999999999 89999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHH
Q 041524 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469 (524)
Q Consensus 390 ~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k 469 (524)
+++.++++++++.++++ |+.+.+.+|+|+ |||.+++.++++++.+++++.+.++.+.|.|||+++. + ..++.+..
T Consensus 154 ~~s~~~~~~ai~~l~~~--Gi~v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~-~-~~~s~~~~ 228 (296)
T TIGR00433 154 THTYDDRVDTLENAKKA--GLKVCSGGIFGL-GETVEDRIGLALALANLPPESVPINFLVKIKGTPLAD-N-KELSADDA 228 (296)
T ss_pred CCCHHHHHHHHHHHHHc--CCEEEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCC-C-CCCCHHHH
Confidence 99999999999999999 999999999998 9999999999999999999999999999999999985 3 23443333
Q ss_pred HHHHHHH
Q 041524 470 QRRLTEL 476 (524)
Q Consensus 470 ~~Rl~~l 476 (524)
.+.+..+
T Consensus 229 ~~~ia~~ 235 (296)
T TIGR00433 229 LKTIALA 235 (296)
T ss_pred HHHHHHH
Confidence 3344333
No 55
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=6.7e-22 Score=210.54 Aligned_cols=190 Identities=15% Similarity=0.176 Sum_probs=146.7
Q ss_pred CCeEEEEEEcccCCccCcccccCCCC-Cccc-cCChHHHHHHHHHHHHCC--CcEEEEEeccCCCCCCccCCccccCCCC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTR-GRER-SRPVESIVKEVDELWKEG--VKEVTLLGQNVNSYNDTSGMEKEVEPGA 307 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~-G~~R-sr~~e~Iv~Ei~~l~~~G--~kei~l~d~n~~~y~~~~~~~~~~~~g~ 307 (524)
.....||.+- -|+++|+||.++... +..+ ...++.+++||+.+.+.| +..|+|.|.+.+..
T Consensus 51 ~~~~LYvHIP-FC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l-------------- 115 (433)
T PRK08629 51 KKYMLYAHVP-FCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL-------------- 115 (433)
T ss_pred CcEEEEEEeC-CccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC--------------
Confidence 4557788874 499999999987542 2222 235899999999887654 34455554332211
Q ss_pred ccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh
Q 041524 308 NWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387 (524)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m 387 (524)
...+.++++.+.+..+...+.+. .+|+.++++.++.|+++ |+++++|+||+++++|+.|
T Consensus 116 -----------------~~~L~~ll~~i~~~f~i~eis~E-~~P~~lt~e~L~~l~~~---vnrlsiGVQS~~d~vLk~~ 174 (433)
T PRK08629 116 -----------------EDELAKTLELAKKLFSIKEVSCE-SDPNHLDPPKLKQLKGL---IDRLSIGVQSFNDDILKMV 174 (433)
T ss_pred -----------------HHHHHHHHHHHHHhCCCceEEEE-eCcccCCHHHHHHHHHh---CCeEEEecCcCCHHHHHHc
Confidence 23577888888776654456554 79999999999999873 9999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 388 RRGYTREAYLDLVQKIRQIIP-DVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 388 ~R~~t~e~~~~~v~~ir~~~p-gi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
+|.++.+...++++.++++.. ...++.|+|+||||||+++++++++++.+++++++++|++++.|||...
T Consensus 175 gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~ 245 (433)
T PRK08629 175 DRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKS 245 (433)
T ss_pred CCCCChhHHHHHHHHHHHHhccCCeEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhh
Confidence 999977555555555544311 3468899999999999999999999999999999999999999999854
No 56
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=8e-22 Score=211.82 Aligned_cols=189 Identities=20% Similarity=0.254 Sum_probs=155.6
Q ss_pred CeEEEEEEcccCCccCcccccCCCCC-c--cccCChHHHHHHHHHHHHC-----CCcEEEEEeccCCCCCCccCCccccC
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRG-R--ERSRPVESIVKEVDELWKE-----GVKEVTLLGQNVNSYNDTSGMEKEVE 304 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G-~--~Rsr~~e~Iv~Ei~~l~~~-----G~kei~l~d~n~~~y~~~~~~~~~~~ 304 (524)
....||.+-. |+++|.||....... + .....++.|++||+.+.+. ++..|+|.|.+++...
T Consensus 50 ~~~LYvHIPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~---------- 118 (453)
T PRK13347 50 PVSLYLHVPF-CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILN---------- 118 (453)
T ss_pred ceEEEEEeCC-ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCC----------
Confidence 3478999866 999999998754322 1 1123479999999977643 4677888887666441
Q ss_pred CCCccccccCcccchhcccchhhHHHHHHHHHhhCC---ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCH
Q 041524 305 PGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP---EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNS 381 (524)
Q Consensus 305 ~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~---~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~ 381 (524)
...+.+|++.+.+..+ ...+.+. .+|..++++.++.|+++ ||++++||+||+++
T Consensus 119 --------------------~~~l~~ll~~i~~~~~~~~~~e~tie-~~p~~lt~e~l~~L~~~--G~~rvsiGvQS~~~ 175 (453)
T PRK13347 119 --------------------PDQFERLMAALRDAFDFAPEAEIAVE-IDPRTVTAEMLQALAAL--GFNRASFGVQDFDP 175 (453)
T ss_pred --------------------HHHHHHHHHHHHHhCCCCCCceEEEE-eccccCCHHHHHHHHHc--CCCEEEECCCCCCH
Confidence 2468888888877543 2355554 68999999999999999 99999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 382 AVLERMRRGYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 382 ~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
++|+.|+|+++.+++.++++.+++. |+. ++.|||+|+||||.+++.+|++++.+++++++.+|.|+..|++...
T Consensus 176 ~vl~~l~R~~~~~~~~~ai~~lr~~--G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~ 250 (453)
T PRK13347 176 QVQKAINRIQPEEMVARAVELLRAA--GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKN 250 (453)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhc--CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhH
Confidence 9999999999999999999999999 885 8999999999999999999999999999999999999876665443
No 57
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.89 E-value=1.5e-20 Score=191.77 Aligned_cols=308 Identities=20% Similarity=0.268 Sum_probs=205.6
Q ss_pred cceEEECCCCcccHHHHHHHHhcCCCc-cccccccccccccCC---C-----cc-cc--CCCeEEEEEEcccCCcc----
Q 041524 184 MVDVVCGPDAYRDLPRLLEEVDYGQKG-INTLLSLEETYADIS---P-----VR-IS--KNSVTAFVSVMRGCNNM---- 247 (524)
Q Consensus 184 ~vD~Vv~gege~~l~~Ll~~~~~g~~~-~~~~~~~~~~~~~l~---p-----~r-~~--~~~~~a~v~isRGC~~~---- 247 (524)
.+|+|+.|+-|.-+-+++.. |-.. ++. ..-.+|..+. | ++ +. +....+-|+|+||||..
T Consensus 126 ~fD~va~gD~Ea~~~dl~~e---G~~~~~~~--~r~rd~~el~~~A~~GA~vv~qHP~yp~~vi~EiETyRGC~r~~~gg 200 (560)
T COG1031 126 GFDVVASGDVEAFVYDLFSE---GVERAIDP--DRFRDYEELDAYAPLGAEVVKQHPNYPEYVICEIETYRGCPRRVSGG 200 (560)
T ss_pred ceeEEEeccHHHHHHHHHhc---CCcccCCh--hhhccHHHHHhhhhccchHHHhCCCCcceEEEEEeeccCCcccccCC
Confidence 68999999888877777752 3111 100 0001111111 1 01 11 12345678999999976
Q ss_pred CcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEec-cCCCCCCccCCccccCCCCccccccCcccchhcccchh
Q 041524 248 CSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQ-NVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGL 326 (524)
Q Consensus 248 CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~-n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 326 (524)
||||.-|.. |...+||+|.|++||+.|.+.|+++|.|--| ++.+|..... |.+| +++++.
T Consensus 201 CSFCtEp~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~-------g~e~-----------P~PnPe 261 (560)
T COG1031 201 CSFCTEPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDN-------GGEV-----------PRPNPE 261 (560)
T ss_pred CccccCcCc-CCcccCCHHHHHHHHHHHHHhccceeeeccccceeeeccccc-------CCCC-----------CCCCHH
Confidence 999999876 9999999999999999999999999998644 5677743211 1111 144567
Q ss_pred hHHHHHHHHHhhCCce-EEEEecCCCCCC------CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHH
Q 041524 327 RFADLLDRLSLEFPEM-RFRYTSPHPKDF------PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDL 399 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~~-~ir~~s~~p~~~------~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~ 399 (524)
.+.+|...+....|.. -+.+...+|..+ +.++++.+.+..---+...+|+||++++|.+.-|=..|.|+.+++
T Consensus 262 alekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~A 341 (560)
T COG1031 262 ALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEA 341 (560)
T ss_pred HHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHHHHH
Confidence 8889999998887765 466666777554 466777777762223568999999999999999989999999999
Q ss_pred HHHHHHhCC--------CcEEEEeEEEcCCCCCHHHHHHHHHHHHHc-----CCCeEEEEeeecCCCChhcccCCCCCCH
Q 041524 400 VQKIRQIIP--------DVGLSSDFICGFCGETEEEHADTLTLMKAV-----GYDMAYMFAYSMRERTHAHRNYVDDVPE 466 (524)
Q Consensus 400 v~~ir~~~p--------gi~i~~~fI~G~PgET~ed~~~tl~~l~~l-----~~d~~~i~~~sp~pGT~~~~~~~~~v~~ 466 (524)
|+.+.+... -+--..+||+|+||||.|.++.+.+|++++ -+-++++-...++|||+++.+ +..-.
T Consensus 342 V~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~--~~~~~ 419 (560)
T COG1031 342 VEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWER--GKKKA 419 (560)
T ss_pred HHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhh--hhHHH
Confidence 999998632 122346899999999999999999999987 245688888999999999952 22111
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhc--ccCCEE-EEEEeccCCCCCCCeEEEeCCCCcE
Q 041524 467 EVKQRRLTELIEAFRE-STGQCYDS--QVGTVQ-LVLVEGPNKKAPDTELVGKSDRGHR 521 (524)
Q Consensus 467 ~~k~~Rl~~l~~~~~~-~~~~~~~~--~vG~~~-~vLve~~~~~~~~~~~~Gr~~~~~~ 521 (524)
+..++++.......++ +-....++ -.|+.. .|.+|-... +...||--+..+
T Consensus 420 ~khk~~~~~fk~~VRe~iD~~MLkrVvP~GTvLrdv~vE~~~~----~~tfgRQ~GSYP 474 (560)
T COG1031 420 EKHKKLFAAFKRKVREEIDLPMLKRVVPKGTVLRDVRVEVYEG----GLTFGRQLGSYP 474 (560)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhcCCCCceeeeEEEEEecC----CceeecccCCcc
Confidence 1112233333222222 11122222 247664 677775542 134566555544
No 58
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.89 E-value=8.6e-22 Score=188.04 Aligned_cols=191 Identities=31% Similarity=0.526 Sum_probs=161.1
Q ss_pred EEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCC-----cEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGV-----KEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~-----kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
.+++.+++||+++|.||..+...|+.+..+++++.++++.+.+.|. +.+.|.|...... .
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~------------~--- 66 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLL------------S--- 66 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCC------------C---
Confidence 4688999999999999998776555677889999999999977653 5566666544332 0
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhhCC---ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLEFP---EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~---~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
...+.++++.+.+..+ ...+.+. .++..++++.++.|+++ |+..+.++++|+++++.+.
T Consensus 67 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~-tn~~~~~~~~~~~l~~~--~~~~i~isl~~~~~~~~~~ 128 (216)
T smart00729 67 ---------------PEQLEELLEAIREILGLADDVEITIE-TRPGTLTEELLEALKEA--GVNRVSLGVQSGSDEVLKA 128 (216)
T ss_pred ---------------HHHHHHHHHHHHHhCCCCCCeEEEEE-eCcccCCHHHHHHHHHc--CCCeEEEecccCCHHHHHH
Confidence 1247778887777654 2344444 45677899999999999 9999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccC
Q 041524 387 MRRGYTREAYLDLVQKIRQIIPD-VGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNY 460 (524)
Q Consensus 387 m~R~~t~e~~~~~v~~ir~~~pg-i~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~ 460 (524)
++++.+.+++.++++.++++ | +.+...+|+|+|+++.+++.++++++.+++++.+.+++|.|.|||++++..
T Consensus 129 ~~~~~~~~~~~~~i~~~~~~--g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 129 INRGHTVEDVLEAVEKLREA--GPIKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred hcCCCCHHHHHHHHHHHHHh--CCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 99999999999999999999 7 899999999999999999999999999999999999999999999999754
No 59
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.89 E-value=1.3e-21 Score=210.55 Aligned_cols=186 Identities=18% Similarity=0.296 Sum_probs=156.3
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc---cccCChHHHHHHHHHHHH-----CCCcEEEEEeccCCCCCCccCCccccCC
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR---ERSRPVESIVKEVDELWK-----EGVKEVTLLGQNVNSYNDTSGMEKEVEP 305 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~---~Rsr~~e~Iv~Ei~~l~~-----~G~kei~l~d~n~~~y~~~~~~~~~~~~ 305 (524)
...||.+ .-|+++|.||..+...+. .+...++.|++||+.+.+ .+++.|+|.|.+++..
T Consensus 50 ~~lYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l------------ 116 (455)
T TIGR00538 50 LSLYVHI-PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYL------------ 116 (455)
T ss_pred eEEEEEe-CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCC------------
Confidence 4678887 569999999998765432 233479999999998754 3678888888766543
Q ss_pred CCccccccCcccchhcccchhhHHHHHHHHHhhCC---ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH
Q 041524 306 GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP---EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA 382 (524)
Q Consensus 306 g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~---~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~ 382 (524)
....+.+|++.+.+..+ ...+.+. .+|..++++.++.|+++ ||++|+||+||++++
T Consensus 117 ------------------~~~~l~~ll~~i~~~~~~~~~~eitie-~np~~l~~e~l~~lk~~--G~~risiGvqS~~~~ 175 (455)
T TIGR00538 117 ------------------SPEQISRLMKLIRENFPFNADAEISIE-IDPRYITKDVIDALRDE--GFNRLSFGVQDFNKE 175 (455)
T ss_pred ------------------CHHHHHHHHHHHHHhCCCCCCCeEEEE-eccCcCCHHHHHHHHHc--CCCEEEEcCCCCCHH
Confidence 02468888888877533 2345554 68999999999999999 999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 383 VLERMRRGYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 383 vL~~m~R~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
+|+.|+|+++.+++.++++.++++ |+. ++.|||+|+||||.+++.+|++++.+++++++.++.|++.|++.
T Consensus 176 ~l~~l~r~~~~~~~~~ai~~l~~~--G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~ 247 (455)
T TIGR00538 176 VQQAVNRIQPEEMIFELMNHAREA--GFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVK 247 (455)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhc--CCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchh
Confidence 999999999999999999999999 884 89999999999999999999999999999999999999888753
No 60
>PLN02428 lipoic acid synthase
Probab=99.88 E-value=1.8e-21 Score=199.09 Aligned_cols=210 Identities=20% Similarity=0.213 Sum_probs=167.5
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
...|+.+++||+++|.||+++..+++.+.+ ++++.+.++.+.+.|++++.|++.+...+.+
T Consensus 102 taT~milg~gCtr~CrFCav~~~~~p~~~d-~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D------------------ 162 (349)
T PLN02428 102 TATIMILGDTCTRGCRFCAVKTSRTPPPPD-PDEPENVAEAIASWGVDYVVLTSVDRDDLPD------------------ 162 (349)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCCCCCCC-hhhHHHHHHHHHHcCCCEEEEEEcCCCCCCc------------------
Confidence 567889999999999999998777666655 6777777777888899999999876443311
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC-CCC
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR-RGY 391 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~-R~~ 391 (524)
.+...+.++++.|.+..|..++.. ..|+.. ++++|+.|+++ |+..++.++|+ ++++++.|+ ++.
T Consensus 163 ---------~ga~~~~elir~Ir~~~P~i~Ie~--L~pdf~~d~elL~~L~eA--G~d~i~hnlET-v~rL~~~Ir~~~~ 228 (349)
T PLN02428 163 ---------GGSGHFAETVRRLKQLKPEILVEA--LVPDFRGDLGAVETVATS--GLDVFAHNIET-VERLQRIVRDPRA 228 (349)
T ss_pred ---------ccHHHHHHHHHHHHHhCCCcEEEE--eCccccCCHHHHHHHHHc--CCCEEccCccC-cHHHHHHhcCCCC
Confidence 113579999999998877666555 444443 79999999999 99999999997 899999999 689
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHH
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQR 471 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~ 471 (524)
+.++++++++.+++..||+.+.++||+|| |||+||+.++++++++++++.+.+..|. .| |..+- .|..-+..+
T Consensus 229 sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL-~P-s~~h~----~v~~~v~p~ 301 (349)
T PLN02428 229 GYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYL-RP-TKRHL----PVKEYVTPE 301 (349)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeecccc-CC-Cccee----eeecccCHH
Confidence 99999999999999999999999999999 9999999999999999999999888874 34 33432 233334455
Q ss_pred HHHHHHHHHHHH
Q 041524 472 RLTELIEAFRES 483 (524)
Q Consensus 472 Rl~~l~~~~~~~ 483 (524)
.++++.+...++
T Consensus 302 ~f~~~~~~~~~~ 313 (349)
T PLN02428 302 KFEFWREYGEEM 313 (349)
T ss_pred HHHHHHHHHHHc
Confidence 555555554443
No 61
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.87 E-value=4.9e-21 Score=205.84 Aligned_cols=187 Identities=19% Similarity=0.248 Sum_probs=154.3
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc---cccCChHHHHHHHHHHHHC-----CCcEEEEEeccCCCCCCccCCccccCC
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR---ERSRPVESIVKEVDELWKE-----GVKEVTLLGQNVNSYNDTSGMEKEVEP 305 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~---~Rsr~~e~Iv~Ei~~l~~~-----G~kei~l~d~n~~~y~~~~~~~~~~~~ 305 (524)
...||.| --|+++|+||..+...+. ...+.++.|++||+.+.+. ++..|.|.|.+.+..
T Consensus 50 ~~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l------------ 116 (453)
T PRK09249 50 LSLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFL------------ 116 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccC------------
Confidence 3567776 559999999998755332 2335789999999987653 466777776554432
Q ss_pred CCccccccCcccchhcccchhhHHHHHHHHHhhCC---ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH
Q 041524 306 GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP---EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA 382 (524)
Q Consensus 306 g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~---~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~ 382 (524)
....+.+|++.+.+..+ ...+.+. .+|..++++.+++|+++ ||++|+||+||++++
T Consensus 117 ------------------~~~~l~~ll~~l~~~~~~~~~~e~tie-~np~~lt~e~l~~l~~a--G~~risiGvqS~~~~ 175 (453)
T PRK09249 117 ------------------SPEQLRRLMALLREHFNFAPDAEISIE-IDPRELDLEMLDALREL--GFNRLSLGVQDFDPE 175 (453)
T ss_pred ------------------CHHHHHHHHHHHHHhCCCCCCCEEEEE-ecCCcCCHHHHHHHHHc--CCCEEEECCCCCCHH
Confidence 12468888888877543 2355554 68999999999999999 999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 383 VLERMRRGYTREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 383 vL~~m~R~~t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
+|+.|+|+++.+++.++++.++++ |+ .++.|+|+|+||||.++++++++++.+++++++.++.|++.|++..
T Consensus 176 ~L~~l~r~~~~~~~~~ai~~l~~~--G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~ 248 (453)
T PRK09249 176 VQKAVNRIQPFEFTFALVEAAREL--GFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFK 248 (453)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHc--CCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhh
Confidence 999999999999999999999999 88 7999999999999999999999999999999999999997777643
No 62
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.87 E-value=8.9e-21 Score=200.52 Aligned_cols=227 Identities=18% Similarity=0.265 Sum_probs=175.4
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCc---cccCChHHHHHHHHHHHHC-C----CcEEEEEeccCCCCCCccCCccccC
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGR---ERSRPVESIVKEVDELWKE-G----VKEVTLLGQNVNSYNDTSGMEKEVE 304 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~---~Rsr~~e~Iv~Ei~~l~~~-G----~kei~l~d~n~~~y~~~~~~~~~~~ 304 (524)
..+.||.+ --|...|.||.+.....+ ....-.+.+.+||+..... | ++.|+|.|.+.+..
T Consensus 34 ~~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL----------- 101 (416)
T COG0635 34 PLSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLL----------- 101 (416)
T ss_pred ceEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccC-----------
Confidence 56788885 899999999998754322 2234578889999988765 2 55677766544332
Q ss_pred CCCccccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcC
Q 041524 305 PGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGN 380 (524)
Q Consensus 305 ~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs 380 (524)
....+..|++.+.+..+ ...|.+. .+|..++.+.++.++++ |+++|++|+||++
T Consensus 102 -------------------~~~~l~~ll~~l~~~~~~~~~~~EitiE-~nP~~~~~e~~~~l~~~--GvNRiSlGVQsf~ 159 (416)
T COG0635 102 -------------------SPEQLERLLKALRELFNDLDPDAEITIE-ANPGTVEAEKFKALKEA--GVNRISLGVQSFN 159 (416)
T ss_pred -------------------CHHHHHHHHHHHHHhcccCCCCceEEEE-eCCCCCCHHHHHHHHHc--CCCEEEeccccCC
Confidence 13567788888876652 2456665 69999999999999999 9999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhccc
Q 041524 381 SAVLERMRRGYTREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRN 459 (524)
Q Consensus 381 ~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~ 459 (524)
+++|+.++|-++.++..++++.+++. |+ .++.|+|+|+|++|.+++.++++.+.+++++++.+|.|+..|+|+.+++
T Consensus 160 ~~~lk~lgR~h~~~~~~~a~~~~~~~--g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~ 237 (416)
T COG0635 160 DEVLKALGRIHDEEEAKEAVELARKA--GFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQR 237 (416)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHc--CCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhh
Confidence 99999999999999999999999998 66 5999999999999999999999999999999999999999999999987
Q ss_pred CCCC--CCHH-HHHHHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 041524 460 YVDD--VPEE-VKQRRLTELIEAFRESTGQCYDSQVGTVQLVL 499 (524)
Q Consensus 460 ~~~~--v~~~-~k~~Rl~~l~~~~~~~~~~~~~~~vG~~~~vL 499 (524)
+.+. +|+. .+.++.+...+.+ ....| .++|-....+
T Consensus 238 ~~~~~~lP~~d~~~~~~~~~~e~L---~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 238 KIKGKALPDEDEKADMYELVEELL---EKAGY-RQYEISNFAK 276 (416)
T ss_pred cccCCCCcChHHHHHHHHHHHHHH---HHCCC-cEEeechhcC
Confidence 6542 4433 3333444444433 33344 3444444444
No 63
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.85 E-value=4.5e-20 Score=188.95 Aligned_cols=188 Identities=15% Similarity=0.256 Sum_probs=151.5
Q ss_pred EEEEEEcccCCccCcccccCCCCC--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRG--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
..+|.+++||+++|.||......+ +.+.+++|+|+++++...+.|+++|.|+|......
T Consensus 6 n~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~------------------- 66 (309)
T TIGR00423 6 NRNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQL------------------- 66 (309)
T ss_pred eeeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-------------------
Confidence 456889999999999999875443 34578999999999999999999999997543212
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecC--------CCCCCCHHHHHHHHcCCCCcceee-cCcCCcCHHH
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP--------HPKDFPDELLYIMRDRPNVCKYIH-LPAQTGNSAV 383 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~--------~p~~~~~elL~~l~~~~~G~~~i~-igiESgs~~v 383 (524)
....+.++++.|.+..+.+.+...+. .....++|.++.|+++ |+..++ .|+|++++++
T Consensus 67 -----------~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeA--Gl~~i~~~g~E~l~~~~ 133 (309)
T TIGR00423 67 -----------DIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKA--GLDSMPGTGAEILDDSV 133 (309)
T ss_pred -----------CHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHc--CCCcCCCCcchhcCHHH
Confidence 02357889999988766544332111 1122358999999999 999995 7999999999
Q ss_pred Hhhh-CCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC----CCCh-hc
Q 041524 384 LERM-RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR----ERTH-AH 457 (524)
Q Consensus 384 L~~m-~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~----pGT~-~~ 457 (524)
++.+ .++.+.++++++++.+++. |+.+.+.+|+|+| ||.||..+++.++++++.+...+..|.|. +||| +.
T Consensus 134 ~~~i~~~~~t~~~~l~~i~~a~~~--Gi~~~s~~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~ 210 (309)
T TIGR00423 134 RRKICPNKLSSDEWLEVIKTAHRL--GIPTTATMMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLE 210 (309)
T ss_pred HHhhCCCCCCHHHHHHHHHHHHHc--CCCceeeEEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhc
Confidence 9988 6678999999999999999 9999999999986 89999999999999999887777666663 5888 54
No 64
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.85 E-value=3.8e-20 Score=199.57 Aligned_cols=187 Identities=17% Similarity=0.264 Sum_probs=148.4
Q ss_pred ccCC-ccCccccc-------CC-CCC---------ccccCChHHHHHHHHHHHHCC--Cc--EEEEEeccCCCCCCccCC
Q 041524 242 RGCN-NMCSFCIV-------PF-TRG---------RERSRPVESIVKEVDELWKEG--VK--EVTLLGQNVNSYNDTSGM 299 (524)
Q Consensus 242 RGC~-~~CsFC~v-------p~-~~G---------~~Rsr~~e~Iv~Ei~~l~~~G--~k--ei~l~d~n~~~y~~~~~~ 299 (524)
--|| +.|.||-- |. +.| +.+..|..++.++++.+...| ++ |+.|.|.+|+++..
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~---- 151 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDL---- 151 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCH----
Confidence 4599 57999973 21 112 245679999999999998865 32 56899999988721
Q ss_pred ccccCCCCccccccCcccchhcccchhhHHHHH-HHH-------------------HhhC--CceEEEEecCCCCCCCHH
Q 041524 300 EKEVEPGANWRLSEGFNSMCKVKKMGLRFADLL-DRL-------------------SLEF--PEMRFRYTSPHPKDFPDE 357 (524)
Q Consensus 300 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll-~~l-------------------~~~~--~~~~ir~~s~~p~~~~~e 357 (524)
++ ...|...+ +.+ .+.. ....+++. .+|+.++++
T Consensus 152 --------~y---------------~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i~~e 207 (522)
T TIGR01211 152 --------DY---------------QEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYCREE 207 (522)
T ss_pred --------HH---------------HHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcCCHH
Confidence 10 11222211 111 1110 11345554 599999999
Q ss_pred HHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHH
Q 041524 358 LLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKA 437 (524)
Q Consensus 358 lL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~ 437 (524)
.|+.|+++ ||++|++|+||+++++|+.|+|+++.+++.++++.++++ |+.+..+||+|+||||.+++.+|++.+.+
T Consensus 208 ~L~~L~~~--G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~--G~~v~~~LM~GLPgqt~e~~~~t~~~l~~ 283 (522)
T TIGR01211 208 HIDRMLKL--GATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDA--GLKVVYHIMPGLPGSSFERDLEMFREIFE 283 (522)
T ss_pred HHHHHHHc--CCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 99999999 999999999999999999999999999999999999999 99999999999999999999999999985
Q ss_pred ---cCCCeEEEEeeecCCCChhcccC
Q 041524 438 ---VGYDMAYMFAYSMRERTHAHRNY 460 (524)
Q Consensus 438 ---l~~d~~~i~~~sp~pGT~~~~~~ 460 (524)
+++|.+.++++.+.|||++++.+
T Consensus 284 ~~~l~pD~Ikiypl~V~~gT~L~~~~ 309 (522)
T TIGR01211 284 DPRFKPDMLKIYPTLVTRGTELYELW 309 (522)
T ss_pred ccCCCcCEEEEecceeeCCCHHHHHH
Confidence 89999999999999999998754
No 65
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.85 E-value=4.6e-20 Score=191.54 Aligned_cols=188 Identities=16% Similarity=0.276 Sum_probs=156.5
Q ss_pred EEEEEcccCCccCcccccCCCCC--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..|.+|+||+++|.||......+ +...+++|+|+++++.+.+.|+++|.|+|.+...+ .
T Consensus 41 ~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~------------~------- 101 (343)
T TIGR03551 41 RNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDL------------D------- 101 (343)
T ss_pred eccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC------------C-------
Confidence 45778999999999999865443 22348999999999999999999999997644322 0
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEec--------CCCCCCCHHHHHHHHcCCCCcceee-cCcCCcCHHHH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTS--------PHPKDFPDELLYIMRDRPNVCKYIH-LPAQTGNSAVL 384 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s--------~~p~~~~~elL~~l~~~~~G~~~i~-igiESgs~~vL 384 (524)
...+.++++.+.+..+.+.+...+ ......++|.++.|+++ |+..++ .|.|+++++++
T Consensus 102 -----------~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeA--Gl~~i~~~~~E~~~~~v~ 168 (343)
T TIGR03551 102 -----------GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEA--GLDSMPGTAAEILDDEVR 168 (343)
T ss_pred -----------HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHh--CcccccCcchhhcCHHHH
Confidence 235788899998876655543321 13455689999999999 999998 57899999999
Q ss_pred hhhCCC-CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCC----CChhcc
Q 041524 385 ERMRRG-YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRE----RTHAHR 458 (524)
Q Consensus 385 ~~m~R~-~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~p----GT~~~~ 458 (524)
+.+.++ .+.+++++.++.++++ |+.+.+.+|+|+| ||.||+.+++.++++++.++.++..|.|.| |||++.
T Consensus 169 ~~i~~~~~~~~~~~~~i~~a~~~--Gi~v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~ 244 (343)
T TIGR03551 169 KVICPDKLSTAEWIEIIKTAHKL--GIPTTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYL 244 (343)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHc--CCcccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCcccc
Confidence 999986 4999999999999999 9999999999986 999999999999999999998899999876 999985
No 66
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.85 E-value=5.5e-20 Score=190.54 Aligned_cols=197 Identities=16% Similarity=0.244 Sum_probs=152.4
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcc---
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANW--- 309 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~--- 309 (524)
....+|.+++||+++|+||.++...|..+.+++|+|+++++.+.+.|+++|.|++.....+. .++
T Consensus 11 ~~~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~------------~~~~~~ 78 (336)
T PRK06245 11 SRNVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDES------------YERIKE 78 (336)
T ss_pred ecceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccc------------hhhhhh
Confidence 34578899999999999999988888888999999999999999999999999975543331 000
Q ss_pred ccc-cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC
Q 041524 310 RLS-EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR 388 (524)
Q Consensus 310 ~~~-~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~ 388 (524)
.+. .|+ ..+.++++++.+......+ +.+.++..++++.++.|+++ |. .+++.+||+++.+++.|+
T Consensus 79 ~~~~~g~----------~~~~~~i~~i~~~~~~~g~-~~~~~~~~lt~e~i~~Lk~a--g~-~l~~~~et~~e~l~~~v~ 144 (336)
T PRK06245 79 QLAEMGY----------SSILEYLYDLCELALEEGL-LPHTNAGILTREEMEKLKEV--NA-SMGLMLEQTSPRLLNTVH 144 (336)
T ss_pred hhhhhhH----------HHHHHHHHHHHHHHhhcCC-CccccCCCCCHHHHHHHHHh--CC-CCCCCccccchhhHHhhc
Confidence 000 000 1234444444332111111 22467888999999999997 64 478889999999998885
Q ss_pred C---CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC-----CCeEEEEeeecCCCChhcc
Q 041524 389 R---GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG-----YDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 389 R---~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~-----~d~~~i~~~sp~pGT~~~~ 458 (524)
+ +.+.++.++.++.+++. |+.+.+++|+|+ |||.+++.+++.++++++ ++.+.+++|+|.|||++..
T Consensus 145 ~~~~~~~~~~~l~~i~~a~~~--Gi~~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~ 219 (336)
T PRK06245 145 RGSPGKDPELRLETIENAGKL--KIPFTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMEN 219 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHc--CCceeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCccc
Confidence 5 45678889999999998 999999999999 999999999999999885 5778899999999999864
No 67
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.83 E-value=2.1e-19 Score=184.96 Aligned_cols=201 Identities=14% Similarity=0.222 Sum_probs=152.1
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
...+|.+++||+++|+||+++...|. .+.+++|+|+++++.+.+.|++++.+++..-.... ..+ -.++--
T Consensus 4 ~n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~----~~~----~~~~l~ 75 (322)
T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEER----YPE----AREWLA 75 (322)
T ss_pred ceEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCcccc----HHH----HHHHHH
Confidence 45789999999999999999887775 45899999999999999999999988742211000 000 000000
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
+.+|.. ....+.++++.+.+..+. +.+.++..++++.++.|+++ |.. +++.+||+++.+++.+++.+
T Consensus 76 ~~~~~~------~~~~~~~~~~~i~~e~~~----~~~~~~g~lt~e~l~~Lk~a--G~~-~~~~~Et~~~~l~~~~~~~~ 142 (322)
T TIGR03550 76 EMGYDS------TLEYLRELCELALEETGL----LPHTNPGVMSRDELARLKPV--NAS-MGLMLETTSERLCKGEAHYG 142 (322)
T ss_pred hcCCcc------HHHHHHHHHHHHHHhcCC----ccccCCCCCCHHHHHHHHhh--CCC-CCcchhhhccccccccccCC
Confidence 001110 113466777777654221 23467788999999999998 864 68999999999888777655
Q ss_pred ----CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC-----CCeEEEEeeecCCCChhcc
Q 041524 392 ----TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG-----YDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 392 ----t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~-----~d~~~i~~~sp~pGT~~~~ 458 (524)
+.++.++.++.+++. |+.+.+++|+|+ |||++|+.+++.++++++ ++.+.+++|.|.||||+..
T Consensus 143 ~p~k~~~~~l~~i~~a~~~--Gi~~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~ 215 (322)
T TIGR03550 143 SPGKDPAVRLETIEDAGRL--KIPFTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMEN 215 (322)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCCccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccC
Confidence 467899999999999 999999999997 999999999999999987 6667778999999999974
No 68
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.82 E-value=7.7e-19 Score=165.41 Aligned_cols=183 Identities=27% Similarity=0.463 Sum_probs=153.0
Q ss_pred EEEcccCCccCcccccCCCCCccccCCh--HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCc
Q 041524 238 VSVMRGCNNMCSFCIVPFTRGRERSRPV--ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGF 315 (524)
Q Consensus 238 v~isRGC~~~CsFC~vp~~~G~~Rsr~~--e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~ 315 (524)
+.+++||+++|+||..+...+.....+. +.+.+.+......+.+.+.+.+.+....
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~---------------------- 58 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLY---------------------- 58 (204)
T ss_pred CccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCcc----------------------
Confidence 3578999999999999877655433333 3566666666667888888877655433
Q ss_pred ccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC-CCCCHH
Q 041524 316 NSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR-RGYTRE 394 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~-R~~t~e 394 (524)
..+.++++.+.+..+...+++.+ +...++++.++.|+++ |+..+.+++||+++.+++.++ ++.+.+
T Consensus 59 ----------~~~~~~i~~~~~~~~~~~~~i~T-~~~~~~~~~~~~l~~~--g~~~i~i~le~~~~~~~~~~~~~~~~~~ 125 (204)
T cd01335 59 ----------PELAELLRRLKKELPGFEISIET-NGTLLTEELLKELKEL--GLDGVGVSLDSGDEEVADKIRGSGESFK 125 (204)
T ss_pred ----------HhHHHHHHHHHhhCCCceEEEEc-CcccCCHHHHHHHHhC--CCceEEEEcccCCHHHHHHHhcCCcCHH
Confidence 15788888888765556666653 4445589999999998 999999999999999999998 788999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEeeecCCCChhc
Q 041524 395 AYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG-YDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 395 ~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~-~d~~~i~~~sp~pGT~~~ 457 (524)
++++.++.+++. ++.+...+|+|.|+++.+++.++++++.+.. ++.+.+++|.|.|||+++
T Consensus 126 ~~~~~i~~~~~~--~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 126 ERLEALKELREA--GLGLSTTLLVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHc--CCCceEEEEEecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 999999999999 9999999999999999999999999999988 899999999999999998
No 69
>PRK08508 biotin synthase; Provisional
Probab=99.81 E-value=2.4e-18 Score=173.59 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=150.9
Q ss_pred EcccCCccCcccccCCCCC----ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCc
Q 041524 240 VMRGCNNMCSFCIVPFTRG----RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGF 315 (524)
Q Consensus 240 isRGC~~~CsFC~vp~~~G----~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~ 315 (524)
.++||+++|.||+.+...+ +++.+++|+|+++++...+.|+++|.+++...... .
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~------------~--------- 71 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGLD------------D--------- 71 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCCC------------c---------
Confidence 3899999999999876432 35668999999999999999999999875443211 0
Q ss_pred ccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHH
Q 041524 316 NSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREA 395 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~ 395 (524)
..-..+.++++.+.+..+.+.+..+ ....++|.++.|+++ |+..+++++|| +++.+..+.++++.++
T Consensus 72 -------~~~e~~~ei~~~ik~~~p~l~i~~s---~G~~~~e~l~~Lk~a--Gld~~~~~lEt-~~~~~~~i~~~~~~~~ 138 (279)
T PRK08508 72 -------KKLEYVAEAAKAVKKEVPGLHLIAC---NGTASVEQLKELKKA--GIFSYNHNLET-SKEFFPKICTTHTWEE 138 (279)
T ss_pred -------ccHHHHHHHHHHHHhhCCCcEEEec---CCCCCHHHHHHHHHc--CCCEEcccccc-hHHHhcCCCCCCCHHH
Confidence 0124577888888776554443222 245689999999999 99999999999 5788999988999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 396 YLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 396 ~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
.++.++.++++ |+.+.+.+|+|+ |||.||..+++.++++++++.+-+..|.|.||||+.
T Consensus 139 ~l~~i~~a~~~--Gi~v~sg~I~Gl-GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~ 197 (279)
T PRK08508 139 RFQTCENAKEA--GLGLCSGGIFGL-GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLK 197 (279)
T ss_pred HHHHHHHHHHc--CCeecceeEEec-CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCC
Confidence 99999999999 999999999997 999999999999999999999999999999999985
No 70
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.80 E-value=1.5e-18 Score=180.65 Aligned_cols=187 Identities=17% Similarity=0.261 Sum_probs=154.3
Q ss_pred EEEEEcccCCccCcccccCCCCC---ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG---RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G---~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
.+|..+.||+++|+||++....+ +++ .++|+|+++++...+.|+++|.+++.+-..+
T Consensus 50 ~~in~Tn~C~~~C~FCa~~~~~~~~~~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~------------------- 109 (351)
T TIGR03700 50 RHLNYTNICVNGCAFCAFQRERGEPGAYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPNL------------------- 109 (351)
T ss_pred CCcccccccccCCccCceeCCCCCcccCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCCC-------------------
Confidence 45778999999999999875444 233 7999999999999999999999986332111
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecC--------CCCCCCHHHHHHHHcCCCCcceee-cCcCCcCHHH
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP--------HPKDFPDELLYIMRDRPNVCKYIH-LPAQTGNSAV 383 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~--------~p~~~~~elL~~l~~~~~G~~~i~-igiESgs~~v 383 (524)
....+.++++.+.+..|.+.+...++ .....+++.++.|+++ |+..++ .|+||+++++
T Consensus 110 -----------~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeA--Gld~~~~~g~E~~~~~v 176 (351)
T TIGR03700 110 -----------PFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEA--GLDSMPGGGAEIFAEEV 176 (351)
T ss_pred -----------CHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHc--CCCcCCCCcccccCHHH
Confidence 01468889999988777666544221 1234578899999999 999987 7999999999
Q ss_pred HhhhCCC-CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC----CCChhcc
Q 041524 384 LERMRRG-YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR----ERTHAHR 458 (524)
Q Consensus 384 L~~m~R~-~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~----pGT~~~~ 458 (524)
++.+.++ .+.+++++.++.++++ |+.+.+.+|+|+ |||.++..+.+..+++++.+...+..|.|. +|||+..
T Consensus 177 ~~~i~~~~~~~~~~l~~i~~a~~~--Gi~~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~ 253 (351)
T TIGR03700 177 RQQICPEKISAERWLEIHRTAHEL--GLKTNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNR 253 (351)
T ss_pred HhhcCCCCCCHHHHHHHHHHHHHc--CCCcceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccC
Confidence 9999986 5788999999999999 999999999997 999999999999999999988888888888 5999864
No 71
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.80 E-value=1e-18 Score=160.03 Aligned_cols=161 Identities=27% Similarity=0.442 Sum_probs=131.5
Q ss_pred EEEcccCCccCcccccCC--CCCccccCChHHHHHHHHHH-HHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccC
Q 041524 238 VSVMRGCNNMCSFCIVPF--TRGRERSRPVESIVKEVDEL-WKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEG 314 (524)
Q Consensus 238 v~isRGC~~~CsFC~vp~--~~G~~Rsr~~e~Iv~Ei~~l-~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g 314 (524)
|++++||+++|.||..+. ..+..+.+++++++++++.+ .+.|++.+.+.+.++..+
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~--------------------- 59 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH--------------------- 59 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS---------------------
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc---------------------
Confidence 578999999999999987 44567889999999999999 587888888887666544
Q ss_pred cccchhcccchhhHHHHHHHHHhhC-CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH-HHhhhCCCCC
Q 041524 315 FNSMCKVKKMGLRFADLLDRLSLEF-PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA-VLERMRRGYT 392 (524)
Q Consensus 315 ~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~-vL~~m~R~~t 392 (524)
..+.+++..+.+.. ...++.+.+ ++...+++.++.|+++ |+..+.+|+||.+++ +++.++++.+
T Consensus 60 -----------~~~~~~~~~~~~~~~~~~~i~~~t-~~~~~~~~~l~~l~~~--~~~~i~~~l~s~~~~~~~~~~~~~~~ 125 (166)
T PF04055_consen 60 -----------PDFIELLELLRKIKKRGIRISINT-NGTLLDEELLDELKKL--GVDRIRISLESLDEESVLRIINRGKS 125 (166)
T ss_dssp -----------CHHHHHHHHHHHCTCTTEEEEEEE-ESTTHCHHHHHHHHHT--TCSEEEEEEBSSSHHHHHHHHSSTSH
T ss_pred -----------hhHHHHHHHHHHhhccccceeeec-cccchhHHHHHHHHhc--CccEEecccccCCHHHhhhhhcCCCC
Confidence 23556655555542 345665553 2333459999999999 899999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHH
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLM 435 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l 435 (524)
.++++++++.++++ |+.....+|+|+||||+++++++++|+
T Consensus 126 ~~~~~~~l~~l~~~--g~~~~~~~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 126 FERVLEALERLKEA--GIPRVIIFIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp HHHHHHHHHHHHHT--TSETEEEEEEEBTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCcEEEEEEEeCCCCHHHHHHHhCcC
Confidence 99999999999999 876688999999999999999999986
No 72
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=161.10 Aligned_cols=177 Identities=18% Similarity=0.284 Sum_probs=134.7
Q ss_pred hHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCC-CCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHH
Q 041524 327 RFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRP-NVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQ 405 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~-~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~ 405 (524)
-+.+..+......+..-+.+. .+|+.+++++|++|++.. +---++.+|+||.++++|+++||+|+...|.++++.+|+
T Consensus 101 vLre~ye~aL~~~~VVGLsIg-TRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rk 179 (312)
T COG1242 101 VLREMYEQALSEAGVVGLSIG-TRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRK 179 (312)
T ss_pred HHHHHHHHHhCcCCeeEEeec-CCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHH
Confidence 455666655555555666665 799999999999998863 234468999999999999999999999999999999999
Q ss_pred hCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 041524 406 IIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD-DVPEEVKQRRLTELIEAFREST 484 (524)
Q Consensus 406 ~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~-~v~~~~k~~Rl~~l~~~~~~~~ 484 (524)
. ||.+.+.+|+|+||||.+++.+|++.+..++++.+.++++....||++.++|.+ .+.--..++-...+.+.++-+
T Consensus 180 r--gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~l- 256 (312)
T COG1242 180 R--GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHL- 256 (312)
T ss_pred c--CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHHhC-
Confidence 9 999999999999999999999999999999999999999999999999887643 222222222223333332221
Q ss_pred HHHHhcccCCEEEEEEeccCCCCCCCeEEEeCC
Q 041524 485 GQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSD 517 (524)
Q Consensus 485 ~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~ 517 (524)
.-.|+|-+.+.+.|...++|-.+
T Consensus 257 ----------pp~vviHRitgd~pr~~li~P~W 279 (312)
T COG1242 257 ----------PPEVVIHRITGDAPRDTLIAPLW 279 (312)
T ss_pred ----------CcceEEEEecCCCCccceecchh
Confidence 23667776655545445555433
No 73
>PRK08445 hypothetical protein; Provisional
Probab=99.78 E-value=3.9e-18 Score=176.87 Aligned_cols=188 Identities=14% Similarity=0.211 Sum_probs=150.0
Q ss_pred EEEEEcccCCccCcccccCCCCC--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..|.+|.||+++|.||++....+ .....++++|++.++...+.|.++|++.|.+-..+ .
T Consensus 44 ~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~------------~------- 104 (348)
T PRK08445 44 RNINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAIGGTQILFQGGVHPKL------------K------- 104 (348)
T ss_pred cccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC------------C-------
Confidence 34678999999999999875422 22255999999999999999999999987443322 1
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEE-EecC------CCCCCC-HHHHHHHHcCCCCcceee-cCcCCcCHHHH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR-YTSP------HPKDFP-DELLYIMRDRPNVCKYIH-LPAQTGNSAVL 384 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir-~~s~------~p~~~~-~elL~~l~~~~~G~~~i~-igiESgs~~vL 384 (524)
...+.++++.|.+..|.+.+. ++.. +...++ +|.++.|+++ |+.+++ +|+||++++++
T Consensus 105 -----------~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeA--Gl~~~~g~glE~~~d~v~ 171 (348)
T PRK08445 105 -----------IEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAK--GLSSIPGAGAEILSDRVR 171 (348)
T ss_pred -----------HHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHc--CCCCCCCCceeeCCHHHH
Confidence 246889999999988766543 2211 112233 8999999999 999985 99999999999
Q ss_pred hhh-CCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEee----ecCCCChhcc
Q 041524 385 ERM-RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAY----SMRERTHAHR 458 (524)
Q Consensus 385 ~~m-~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~----sp~pGT~~~~ 458 (524)
+.+ .++.+.+++++.++.++++ |+.+.+.+|+|+ |||.++..+.+.++++++.+...+..| .+.||||++.
T Consensus 172 ~~~~pk~~t~~~~i~~i~~a~~~--Gi~~~sg~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~ 247 (348)
T PRK08445 172 DIIAPKKLDSDRWLEVHRQAHLI--GMKSTATMMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKE 247 (348)
T ss_pred HhhCCCCCCHHHHHHHHHHHHHc--CCeeeeEEEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccc
Confidence 999 7789999999999999999 999999999997 699999999999999998766333332 2449999975
No 74
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.78 E-value=4.3e-18 Score=176.65 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=147.8
Q ss_pred EEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..+.++.||+++|+||.+....+. .+.+++++|+++++.+.+.|+++|.|+|......
T Consensus 43 ~~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~-------------------- 102 (340)
T TIGR03699 43 RNINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNPDL-------------------- 102 (340)
T ss_pred cccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------
Confidence 345679999999999997654443 3468999999999999989999999986532211
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEE-EecC------CC-CCCCHHHHHHHHcCCCCcceee-cCcCCcCHHHH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR-YTSP------HP-KDFPDELLYIMRDRPNVCKYIH-LPAQTGNSAVL 384 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir-~~s~------~p-~~~~~elL~~l~~~~~G~~~i~-igiESgs~~vL 384 (524)
....+.++++.+.+..+.+.+. ++.. .. ...+++.++.|+++ |+.+++ .|+|+++++++
T Consensus 103 ----------~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~a--G~~~~~~~g~E~~~~~~~ 170 (340)
T TIGR03699 103 ----------GLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEA--GLDSIPGGGAEILSDRVR 170 (340)
T ss_pred ----------CHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHc--CCCcCCCCcccccCHHHH
Confidence 0134678888888765443321 1100 01 12248999999999 999998 58999999999
Q ss_pred hhhC-CCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC----CCChhcc
Q 041524 385 ERMR-RGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR----ERTHAHR 458 (524)
Q Consensus 385 ~~m~-R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~----pGT~~~~ 458 (524)
+.+. ++.+.++++++++.++++ |+.+.+++|+|+ |||.++..+++.++++++.+...+..|.|. +|||++.
T Consensus 171 ~~~~~~~~s~~~~l~~i~~a~~~--Gi~v~~~~iiGl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~ 246 (340)
T TIGR03699 171 KIISPKKISSEEWLEVMETAHKL--GLPTTATMMFGH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGK 246 (340)
T ss_pred HhhCCCCCCHHHHHHHHHHHHHc--CCCccceeEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccC
Confidence 9985 467999999999999999 999999999996 999999999999999999887777666663 7999875
No 75
>PRK06267 hypothetical protein; Provisional
Probab=99.78 E-value=2.9e-17 Score=170.74 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=143.2
Q ss_pred EEEEEEcccCC--ccCcccccCCCCC-----ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCC
Q 041524 235 TAFVSVMRGCN--NMCSFCIVPFTRG-----RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGA 307 (524)
Q Consensus 235 ~a~v~isRGC~--~~CsFC~vp~~~G-----~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~ 307 (524)
...|..|++|+ ++|+||..+...+ .++.+++|+|++|++.+.+.|++.+.+.|... +
T Consensus 28 ~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~--~-------------- 91 (350)
T PRK06267 28 ERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYG--Y-------------- 91 (350)
T ss_pred EEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCC--C--------------
Confidence 45667899999 9999999876432 24678999999999999999998776654321 1
Q ss_pred ccccccCcccchhcccchhhHHHHHHHHHhhCCc-eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 308 NWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE-MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~-~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
....+.++++.+...... .++. ....+.+.+..+..+ | +..++||++++++..
T Consensus 92 ----------------~~~el~~i~e~I~~~~~~~~~~s-----~G~~d~~~~~~~~l~--G---v~g~~ET~~~~~~~~ 145 (350)
T PRK06267 92 ----------------TTEEINDIAEMIAYIQGCKQYLN-----VGIIDFLNINLNEIE--G---VVGAVETVNPKLHRE 145 (350)
T ss_pred ----------------CHHHHHHHHHHHHHhhCCceEee-----cccCCHHHHhhcccc--C---ceeeeecCCHHHHHh
Confidence 023577777777665332 2332 223455555555444 5 456999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 387 m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
++++++.+++.+.++.++++ |+.+.+.+|+|+ |||.+|+.++++++.+++++.+.+++|.|.||||+..
T Consensus 146 i~~~~s~ed~~~~l~~ak~a--Gi~v~~g~IiGl-gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~ 214 (350)
T PRK06267 146 ICPGKPLDKIKEMLLKAKDL--GLKTGITIILGL-GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFEN 214 (350)
T ss_pred hCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCC
Confidence 99999999999999999999 999999999996 9999999999999999999999999999999999875
No 76
>PLN02389 biotin synthase
Probab=99.77 E-value=4.8e-17 Score=169.97 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=155.5
Q ss_pred EEEEEE-cccCCccCcccccCCCC--C--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 235 TAFVSV-MRGCNNMCSFCIVPFTR--G--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 235 ~a~v~i-sRGC~~~CsFC~vp~~~--G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
...+++ +.||+++|.||...... + +++..++|+|+++++.+.+.|+++|.++..--... +.++
T Consensus 83 ~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~------------~e~~ 150 (379)
T PLN02389 83 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTV------------GRKT 150 (379)
T ss_pred EEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCC------------CChh
Confidence 344556 89999999999986432 2 25568999999999999999999988763110111 1110
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
.-..+.++++.+.+.. +.+. .....+++|.++.|+++ |+.++++.+|| +++..+.+..
T Consensus 151 --------------~~e~i~eiir~ik~~~--l~i~---~s~G~l~~E~l~~LkeA--Gld~~~~~LeT-s~~~y~~i~~ 208 (379)
T PLN02389 151 --------------NFNQILEYVKEIRGMG--MEVC---CTLGMLEKEQAAQLKEA--GLTAYNHNLDT-SREYYPNVIT 208 (379)
T ss_pred --------------HHHHHHHHHHHHhcCC--cEEE---ECCCCCCHHHHHHHHHc--CCCEEEeeecC-ChHHhCCcCC
Confidence 0134666777765432 2332 33456899999999999 99999999999 7889999988
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHc--CCCeEEEEeeecCCCChhcccCCCCCCHH
Q 041524 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAV--GYDMAYMFAYSMRERTHAHRNYVDDVPEE 467 (524)
Q Consensus 390 ~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l--~~d~~~i~~~sp~pGT~~~~~~~~~v~~~ 467 (524)
+++.+++++.++.+++. |+.+.+.+|+|+ |||.+|..+++.+++++ .++.+.++.|.|.||||++.. +.++..
T Consensus 209 ~~s~e~rl~ti~~a~~~--Gi~v~sg~IiGl-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~--~~~s~~ 283 (379)
T PLN02389 209 TRSYDDRLETLEAVREA--GISVCSGGIIGL-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQ--KPVEIW 283 (379)
T ss_pred CCCHHHHHHHHHHHHHc--CCeEeEEEEECC-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCC--CCCCHH
Confidence 89999999999999999 999999999999 99999999999999999 578999999999999999852 344444
Q ss_pred HHHHHHH
Q 041524 468 VKQRRLT 474 (524)
Q Consensus 468 ~k~~Rl~ 474 (524)
...+.++
T Consensus 284 e~lr~iA 290 (379)
T PLN02389 284 EMVRMIA 290 (379)
T ss_pred HHHHHHH
Confidence 4444333
No 77
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.73 E-value=1.7e-16 Score=162.99 Aligned_cols=190 Identities=19% Similarity=0.273 Sum_probs=146.6
Q ss_pred cccCCc-cCcccccC------CC-CC---------ccccCChHHHHHHHHHHHHCCCc----EEEEEeccCCCCCCccCC
Q 041524 241 MRGCNN-MCSFCIVP------FT-RG---------RERSRPVESIVKEVDELWKEGVK----EVTLLGQNVNSYNDTSGM 299 (524)
Q Consensus 241 sRGC~~-~CsFC~vp------~~-~G---------~~Rsr~~e~Iv~Ei~~l~~~G~k----ei~l~d~n~~~y~~~~~~ 299 (524)
-.|||| +|.||.-. .. .| +.+.-|-.++...++.|...|.. ++.|.|.+|++...
T Consensus 74 p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~---- 149 (515)
T COG1243 74 PHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSL---- 149 (515)
T ss_pred CCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCCH----
Confidence 489997 99999754 11 12 12445778888888989887643 68889999986511
Q ss_pred ccccCCCCccccccCcccchhcccchhhHHH-HHHHHH----------hhC--Cc---eEEEEecCCCCCCCHHHHHHHH
Q 041524 300 EKEVEPGANWRLSEGFNSMCKVKKMGLRFAD-LLDRLS----------LEF--PE---MRFRYTSPHPKDFPDELLYIMR 363 (524)
Q Consensus 300 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~-Ll~~l~----------~~~--~~---~~ir~~s~~p~~~~~elL~~l~ 363 (524)
+ . ..+|.. +++++. ... .. .-++++ .+|+.++++.++.|.
T Consensus 150 --------~--y-------------qe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiE-TRPD~~~ee~ld~ml 205 (515)
T COG1243 150 --------E--Y-------------QEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIE-TRPDYIDEEHLDQML 205 (515)
T ss_pred --------H--H-------------HHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEe-cCccccCHHHHHHHH
Confidence 0 0 111221 222222 111 11 235665 799999999999999
Q ss_pred cCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC---C
Q 041524 364 DRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG---Y 440 (524)
Q Consensus 364 ~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~---~ 440 (524)
+. |++.|.+|+||..++||++++||||.+++.++.+.++++ |+.+...+|.|+||.+.|--.+++..+.+.+ +
T Consensus 206 ky--G~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~--GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~P 281 (515)
T COG1243 206 KY--GVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDA--GFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRP 281 (515)
T ss_pred hc--CCcEEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhc--CcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCC
Confidence 99 999999999999999999999999999999999999999 9999999999999998876656666665554 9
Q ss_pred CeEEEEeeecCCCChhcccCCC
Q 041524 441 DMAYMFAYSMRERTHAHRNYVD 462 (524)
Q Consensus 441 d~~~i~~~sp~pGT~~~~~~~~ 462 (524)
|.+.+||-...+||++|.+|+.
T Consensus 282 DmlKIYPtLVi~gT~Ly~mwk~ 303 (515)
T COG1243 282 DMLKIYPTLVIEGTELYEMWKR 303 (515)
T ss_pred CeEEEeeeEEECCchHHHHHHc
Confidence 9999999999999999987753
No 78
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.70 E-value=1.2e-15 Score=159.83 Aligned_cols=200 Identities=11% Similarity=0.089 Sum_probs=154.1
Q ss_pred EEEEEcccCCccCcccccCCCCC-ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccC
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG-RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEG 314 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G-~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g 314 (524)
+.+.+|.+|+++|.||......+ ..+..++++|+++++.+.+.|+++|.|++..-... .
T Consensus 76 ~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-------------~------- 135 (371)
T PRK09240 76 TPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAK-------------V------- 135 (371)
T ss_pred eceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-------------C-------
Confidence 44667999999999999865433 23668999999999999999999999986332111 0
Q ss_pred cccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC---CCC
Q 041524 315 FNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR---RGY 391 (524)
Q Consensus 315 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~---R~~ 391 (524)
....+.++++.+.+..+...+ ++..++.+.++.|+++ |+.++++++||.+++.++.+. +.+
T Consensus 136 ---------~~e~l~~~i~~Ik~~~p~i~i-----~~g~lt~e~l~~Lk~a--Gv~r~~i~lET~~~~~~~~i~~~g~~h 199 (371)
T PRK09240 136 ---------GVDYIRRALPIAREYFSSVSI-----EVQPLSEEEYAELVEL--GLDGVTVYQETYNPATYAKHHLRGPKR 199 (371)
T ss_pred ---------CHHHHHHHHHHHHHhCCCcee-----ccCCCCHHHHHHHHHc--CCCEEEEEEecCCHHHHHHhCcCCCCC
Confidence 124577777777765554332 3345789999999999 999999999999999999995 578
Q ss_pred CHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCC------eEEEEeeecCCCChhcccCCCCC
Q 041524 392 TREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYD------MAYMFAYSMRERTHAHRNYVDDV 464 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d------~~~i~~~sp~pGT~~~~~~~~~v 464 (524)
+.++.++.++.++++ |+. +.+++|+|+ ||+.+|..+++..++.++.. .+.+..|.|.+| ++.. ...+
T Consensus 200 ~~~~rl~~i~~a~~a--G~~~v~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~--~~~~ 273 (371)
T PRK09240 200 DFEYRLETPERAGRA--GIRKIGLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEP--ASIV 273 (371)
T ss_pred CHHHHHHHHHHHHHc--CCCeeceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCC--CCCC
Confidence 999999999999999 995 999999999 57999998888888887653 466777899999 7753 3346
Q ss_pred CHHHHHHHHHHHH
Q 041524 465 PEEVKQRRLTELI 477 (524)
Q Consensus 465 ~~~~k~~Rl~~l~ 477 (524)
+.....+.+..+.
T Consensus 274 ~~~e~l~~ia~~R 286 (371)
T PRK09240 274 SDKQLVQLICAFR 286 (371)
T ss_pred CHHHHHHHHHHHH
Confidence 6555544444433
No 79
>PRK15108 biotin synthase; Provisional
Probab=99.69 E-value=2.6e-15 Score=155.70 Aligned_cols=201 Identities=16% Similarity=0.167 Sum_probs=154.8
Q ss_pred EEEEEE-cccCCccCcccccCCCC--C--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 235 TAFVSV-MRGCNNMCSFCIVPFTR--G--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 235 ~a~v~i-sRGC~~~CsFC~vp~~~--G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
...+.+ |.+|+.+|.||...... + +++..++|+|++.++...+.|+++|.+.....+.. ..
T Consensus 43 ~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~------------~~-- 108 (345)
T PRK15108 43 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH------------ER-- 108 (345)
T ss_pred EEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC------------cc--
Confidence 344555 99999999999886421 2 23457999999999999999999997653211100 00
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
.-..+.++++.+.+.. ..+.. ....++.+.++.|+++ |+.++++.+|| +++....+..
T Consensus 109 --------------~~e~i~~~i~~ik~~~--i~v~~---s~G~ls~e~l~~LkeA--Gld~~n~~leT-~p~~f~~I~~ 166 (345)
T PRK15108 109 --------------DMPYLEQMVQGVKAMG--LETCM---TLGTLSESQAQRLANA--GLDYYNHNLDT-SPEFYGNIIT 166 (345)
T ss_pred --------------hHHHHHHHHHHHHhCC--CEEEE---eCCcCCHHHHHHHHHc--CCCEEeecccc-ChHhcCCCCC
Confidence 0134667777776532 23322 2346789999999999 99999999999 8999999988
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHc--CCCeEEEEeeecCCCChhcccCCCCCCHH
Q 041524 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAV--GYDMAYMFAYSMRERTHAHRNYVDDVPEE 467 (524)
Q Consensus 390 ~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l--~~d~~~i~~~sp~pGT~~~~~~~~~v~~~ 467 (524)
+++.++.++.++.+++. |+.+.+.+|+|+ |||.+|..+.+..++++ ..+.+.++.|.|.||||+... ..++..
T Consensus 167 ~~~~~~rl~~i~~a~~~--G~~v~sg~i~Gl-gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~--~~~~~~ 241 (345)
T PRK15108 167 TRTYQERLDTLEKVRDA--GIKVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADN--DDVDAF 241 (345)
T ss_pred CCCHHHHHHHHHHHHHc--CCceeeEEEEeC-CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCC--CCCCHH
Confidence 88999999999999999 999999999998 99999999999999999 677888899999999998752 345555
Q ss_pred HHHHHHHHH
Q 041524 468 VKQRRLTEL 476 (524)
Q Consensus 468 ~k~~Rl~~l 476 (524)
..-+.++.+
T Consensus 242 e~lr~iAi~ 250 (345)
T PRK15108 242 DFIRTIAVA 250 (345)
T ss_pred HHHHHHHHH
Confidence 444444433
No 80
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.64 E-value=1.1e-14 Score=152.41 Aligned_cols=202 Identities=10% Similarity=0.069 Sum_probs=152.6
Q ss_pred EEEEEcccCCccCcccccCCCCC-ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccC
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG-RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEG 314 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G-~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g 314 (524)
+.+..+.+|+++|.||......+ .....++++|+++++.+.+.|+++|.+++..-...
T Consensus 75 ~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~--------------------- 133 (366)
T TIGR02351 75 TPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKA--------------------- 133 (366)
T ss_pred eeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC---------------------
Confidence 34567999999999999864322 12446899999999999999999999986321111
Q ss_pred cccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC---CCC
Q 041524 315 FNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR---RGY 391 (524)
Q Consensus 315 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~---R~~ 391 (524)
.....+.++++.+.+..+...+. ...++.+-++.|+++ |+.++++++||.+++.++.|. +.+
T Consensus 134 --------~~~e~l~eii~~Ik~~~p~i~Ie-----i~~lt~e~~~~Lk~a--Gv~r~~i~lET~~~~~y~~i~~~g~~h 198 (366)
T TIGR02351 134 --------AGVEYIAEAIKLAREYFSSLAIE-----VQPLNEEEYKKLVEA--GLDGVTVYQETYNEKKYKKHHLAGKKK 198 (366)
T ss_pred --------CCHHHHHHHHHHHHHhCCccccc-----cccCCHHHHHHHHHc--CCCEEEEEeecCCHHHHHhcCcCCCCC
Confidence 01235778888887665543332 224799999999999 999999999999999999987 678
Q ss_pred CHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCC------CeEEEEeeecCCCChhcccCCCCC
Q 041524 392 TREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGY------DMAYMFAYSMRERTHAHRNYVDDV 464 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~------d~~~i~~~sp~pGT~~~~~~~~~v 464 (524)
+.++.++.++.++++ |+. +.+++|+|++ |+.++..+++..++.++. ..+.+..+.|.+| ++.. ...+
T Consensus 199 ~~~~rl~~i~~a~~a--G~~~v~~g~i~Gl~-e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~--~~~l 272 (366)
T TIGR02351 199 DFRYRLNTPERAAKA--GMRKIGIGALLGLD-DWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKP--KVIV 272 (366)
T ss_pred CHHHHHHHHHHHHHc--CCCeeceeEEEeCc-hhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCC--CCcC
Confidence 999999999999999 997 8999999996 577777777777666644 4566777889999 7643 3456
Q ss_pred CHHHHHHHHHHHHHH
Q 041524 465 PEEVKQRRLTELIEA 479 (524)
Q Consensus 465 ~~~~k~~Rl~~l~~~ 479 (524)
+.....+.+..+.-+
T Consensus 273 ~~~~~~~~i~~~R~~ 287 (366)
T TIGR02351 273 TDRELVQIICAYRLF 287 (366)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666555533
No 81
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.63 E-value=5.2e-15 Score=155.13 Aligned_cols=189 Identities=16% Similarity=0.250 Sum_probs=150.2
Q ss_pred EEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
+.|+++.+|+.+|.||.+....+. ....++|+|++.++.+.+.|+++|.|++..-... .
T Consensus 62 ~~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~-------------~------ 122 (371)
T PRK07360 62 RNINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAA-------------D------ 122 (371)
T ss_pred cCcccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCC-------------C------
Confidence 346779999999999998654321 1237999999999999999999999996421111 0
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecC--------CCCCCCHHHHHHHHcCCCCcceee-cCcCCcCHHHH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP--------HPKDFPDELLYIMRDRPNVCKYIH-LPAQTGNSAVL 384 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~--------~p~~~~~elL~~l~~~~~G~~~i~-igiESgs~~vL 384 (524)
....+.++++.+.+..+...+...++ .....+++.++.|+++ |+.+++ -+.|..++++.
T Consensus 123 ----------~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeA--Gld~~~~t~~e~l~~~vr 190 (371)
T PRK07360 123 ----------SLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDA--GLDSMPGTAAEILVDEVR 190 (371)
T ss_pred ----------cHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHc--CCCcCCCcchhhccHHHH
Confidence 02357788888887655554432111 2345678899999999 999987 46788889999
Q ss_pred hhhCCC-CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCC----CChhcc
Q 041524 385 ERMRRG-YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRE----RTHAHR 458 (524)
Q Consensus 385 ~~m~R~-~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~p----GT~~~~ 458 (524)
+.+..+ .+.+++++.++.++++ |+.+.+.+|+|+ |||.+|..+.+.++++++.+...+.+|.|.| |||+..
T Consensus 191 ~~i~p~~~s~~~~l~~i~~a~~~--Gl~~~sg~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~ 266 (371)
T PRK07360 191 RIICPEKIKTAEWIEIVKTAHKL--GLPTTSTMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYE 266 (371)
T ss_pred HhhCCCCCCHHHHHHHHHHHHHc--CCCceeeEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCcccc
Confidence 888775 5999999999999999 999999999998 9999999999999999999998888888854 999975
No 82
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.61 E-value=3.3e-14 Score=144.01 Aligned_cols=186 Identities=17% Similarity=0.218 Sum_probs=150.8
Q ss_pred eEEEEEEcccC-CccCcccccCCCC--C--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 234 VTAFVSVMRGC-NNMCSFCIVPFTR--G--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 234 ~~a~v~isRGC-~~~CsFC~vp~~~--G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
....|+++-|| |..|.||...... | ++..+++++|+++.+...+.|...+.++..--+ + |+
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~------------~~- 115 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-P------------GR- 115 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-C------------Cc-
Confidence 34566776555 9999999976522 2 356789999999999999999777666542111 1 11
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR 388 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~ 388 (524)
...++.+.++.+.+.-+ +.+ . .....+++|.++.++++ |..++.-.+|| |++..+.+.
T Consensus 116 ---------------~~~~i~~~v~~Vk~~~~-le~--c-~slG~l~~eq~~~L~~a--Gvd~ynhNLeT-s~~~y~~I~ 173 (335)
T COG0502 116 ---------------DMEEVVEAIKAVKEELG-LEV--C-ASLGMLTEEQAEKLADA--GVDRYNHNLET-SPEFYENII 173 (335)
T ss_pred ---------------cHHHHHHHHHHHHHhcC-cHH--h-hccCCCCHHHHHHHHHc--Chhheeccccc-CHHHHcccC
Confidence 12456666666664332 222 2 44568899999999999 99999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEeeecCCCChhcc
Q 041524 389 RGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG-YDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 389 R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~-~d~~~i~~~sp~pGT~~~~ 458 (524)
-++|.|+-++.++.++++ |+.+.+..|+|+ |||.+|-.+.+..+.++. ++.+-+..|.|.||||+..
T Consensus 174 tt~t~edR~~tl~~vk~~--Gi~vcsGgI~Gl-GEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~ 241 (335)
T COG0502 174 TTRTYEDRLNTLENVREA--GIEVCSGGIVGL-GETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLEN 241 (335)
T ss_pred CCCCHHHHHHHHHHHHHc--CCccccceEecC-CCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCcccc
Confidence 999999999999999999 999999999999 899999999999999998 9999999999999999985
No 83
>PRK05926 hypothetical protein; Provisional
Probab=99.60 E-value=2.7e-14 Score=149.02 Aligned_cols=185 Identities=13% Similarity=0.219 Sum_probs=149.7
Q ss_pred EEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCc
Q 041524 238 VSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGF 315 (524)
Q Consensus 238 v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~ 315 (524)
+..+..|+..|.||++....+. ....++|+|+++++.. +.|+++|.+++..-...
T Consensus 72 in~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~---------------------- 128 (370)
T PRK05926 72 LYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC---------------------- 128 (370)
T ss_pred eecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC----------------------
Confidence 3459999999999997554432 3457899999999998 68999999996321111
Q ss_pred ccchhcccchhhHHHHHHHHHhhCCceEEEEecC--------CCCCCCHHHHHHHHcCCCCcceeec-CcCCcCHHHHhh
Q 041524 316 NSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP--------HPKDFPDELLYIMRDRPNVCKYIHL-PAQTGNSAVLER 386 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~--------~p~~~~~elL~~l~~~~~G~~~i~i-giESgs~~vL~~ 386 (524)
....+.++++.+.+..|.+.+...+. -....++|.++.|+++ |+.+++. |+|+.++++.+.
T Consensus 129 --------~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeA--Gl~~~~g~GaEi~~e~~r~~ 198 (370)
T PRK05926 129 --------NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIA--GLDSIPGGGAEILVDEIRET 198 (370)
T ss_pred --------CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHc--CcCccCCCCchhcCHHHHHh
Confidence 12457888999988877766654321 1122468899999999 9999886 699999999998
Q ss_pred hCC-CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeec----CCCChhcc
Q 041524 387 MRR-GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM----RERTHAHR 458 (524)
Q Consensus 387 m~R-~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp----~pGT~~~~ 458 (524)
+.. +.+.+++++.++.++++ |+.+.+.+|+|. |||.||..+.+..+++++.+.+.+..|.| .++|+++.
T Consensus 199 ~~p~~~t~~e~l~~i~~a~~~--Gi~~~sgmi~G~-gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~ 272 (370)
T PRK05926 199 LAPGRLSSQGFLEIHKTAHSL--GIPSNATMLCYH-RETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGK 272 (370)
T ss_pred hCCCCCCHHHHHHHHHHHHHc--CCcccCceEEeC-CCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccc
Confidence 864 66889999999999999 999999988885 99999999999999999999999999988 67888864
No 84
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.58 E-value=2.4e-13 Score=140.70 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=150.9
Q ss_pred eEEEEEEcccCCccCcccccCCC---CCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFT---RGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR 310 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~---~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~ 310 (524)
.+..|+++.+|+.+|.||..+.. .++.+..+++++.+.++.+.+.|++.|.|+|.....+
T Consensus 17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~----------------- 79 (331)
T PRK00164 17 TYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLR----------------- 79 (331)
T ss_pred CeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCc-----------------
Confidence 45678999999999999987542 2345678999999999999888999999998554332
Q ss_pred cccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC
Q 041524 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG 390 (524)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~ 390 (524)
.++.++++.+.+..+...+.+++ +...+ ++.++.++++ |+..|.++++|.+++..+.++++
T Consensus 80 ---------------~~l~~li~~i~~~~~~~~i~itT-NG~ll-~~~~~~L~~a--gl~~i~ISlds~~~e~~~~i~~~ 140 (331)
T PRK00164 80 ---------------KDLEDIIAALAALPGIRDLALTT-NGYLL-ARRAAALKDA--GLDRVNVSLDSLDPERFKAITGR 140 (331)
T ss_pred ---------------cCHHHHHHHHHhcCCCceEEEEc-CchhH-HHHHHHHHHc--CCCEEEEEeccCCHHHhccCCCC
Confidence 24788888887654445666654 32223 4678888888 99999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHH
Q 041524 391 YTREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k 469 (524)
.+.+++++.++.+++. |+ .+...++ .+||.+.+++.+.++++.+++++ +.+..|.|..+...+. ....++....
T Consensus 141 ~~~~~vl~~i~~~~~~--g~~~v~i~~v-v~~g~n~~ei~~l~~~~~~~gv~-v~~ie~~p~~~~~~~~-~~~~~~~~~~ 215 (331)
T PRK00164 141 DRLDQVLAGIDAALAA--GLTPVKVNAV-LMKGVNDDEIPDLLEWAKDRGIQ-LRFIELMPTGEGNEWF-RKHHLSGAEI 215 (331)
T ss_pred CCHHHHHHHHHHHHHC--CCCcEEEEEE-EECCCCHHHHHHHHHHHHhCCCe-EEEEEeeECCCCcchh-hhcCCCHHHH
Confidence 9999999999999998 76 5665554 36889999999999999999875 6777888876654332 1223444444
Q ss_pred HHHH
Q 041524 470 QRRL 473 (524)
Q Consensus 470 ~~Rl 473 (524)
.+++
T Consensus 216 ~~~l 219 (331)
T PRK00164 216 RARL 219 (331)
T ss_pred HHHH
Confidence 4433
No 85
>PRK08444 hypothetical protein; Provisional
Probab=99.57 E-value=4.1e-14 Score=146.76 Aligned_cols=187 Identities=16% Similarity=0.245 Sum_probs=153.5
Q ss_pred EEEEEcccCCccCcccccCCCCC---ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG---RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G---~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
.+|..+.-|.++|.||++....+ .| ..++|+|++.++...+.|+++|.+++..-..+ +
T Consensus 51 ~~In~TN~C~~~C~FCaf~~~~~~~~~y-~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~--------------~---- 111 (353)
T PRK08444 51 RHINPTNICADVCKFCAFSAHRKNPNPY-TMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY--------------G---- 111 (353)
T ss_pred CCcccccccccCCccCCCccCCCCCccc-cCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC--------------C----
Confidence 34677999999999999865333 24 47999999999999999999999997421111 0
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEec-C-------CCCCCCHHHHHHHHcCCCCcceeec-CcCCcCHHH
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTS-P-------HPKDFPDELLYIMRDRPNVCKYIHL-PAQTGNSAV 383 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s-~-------~p~~~~~elL~~l~~~~~G~~~i~i-giESgs~~v 383 (524)
-..+.++++.+.+..|.+.+..-| . ......+|.++.|+++ |...++- |.|..++++
T Consensus 112 ------------~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeA--Gl~~~~g~~aEi~~~~v 177 (353)
T PRK08444 112 ------------YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEY--GVDSMPGGGAEIFDEEV 177 (353)
T ss_pred ------------HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHh--CcccCCCCCchhcCHHH
Confidence 135788999998877777766322 1 1223457999999999 9999887 699999999
Q ss_pred HhhhCCCC-CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC----CCChhcc
Q 041524 384 LERMRRGY-TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR----ERTHAHR 458 (524)
Q Consensus 384 L~~m~R~~-t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~----pGT~~~~ 458 (524)
.+.+..++ +.+++++.++.++++ |+...+.+|+|++ ||.+|..+.+..+++++.+...+..|.|. +|||+..
T Consensus 178 r~~I~p~k~~~~~~~~i~~~a~~~--Gi~~~sg~l~G~g-Et~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~ 254 (353)
T PRK08444 178 RKKICKGKVSSERWLEIHKYWHKK--GKMSNATMLFGHI-ENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKV 254 (353)
T ss_pred HhhhCCCCCCHHHHHHHHHHHHHc--CCCccceeEEecC-CCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCC
Confidence 99998755 668999999999999 9999999999995 99999999999999999999999999999 8999874
No 86
>PTZ00413 lipoate synthase; Provisional
Probab=99.56 E-value=4.6e-13 Score=136.93 Aligned_cols=209 Identities=16% Similarity=0.188 Sum_probs=158.0
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
...|+-.+..|+.+|.||++.... ..-..+++++++-.+...+.|++.+.++..+ +++ +.+
T Consensus 149 tATfmilG~~CTr~C~FCaqstg~-~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~----RDD--------------L~D 209 (398)
T PTZ00413 149 TATIMVMGDHCTRGCRFCSVKTSR-KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVD----RDD--------------LPD 209 (398)
T ss_pred eeEeeecCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEc----CCC--------------CCh
Confidence 456777789999999999996432 2355689999999998888899987766532 111 111
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCC--CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC-C
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDF--PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR-G 390 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~--~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R-~ 390 (524)
.+...|++.+++|.+..+...+... -| ++ +.+.++.|+++ |...++-.+|| +++....++. +
T Consensus 210 ---------~ga~~~a~~I~~Ir~~~p~~~Ievl--ig-Df~g~~e~l~~L~eA--G~dvynHNLET-v~rLyp~VRt~~ 274 (398)
T PTZ00413 210 ---------GGASHVARCVELIKESNPELLLEAL--VG-DFHGDLKSVEKLANS--PLSVYAHNIEC-VERITPYVRDRR 274 (398)
T ss_pred ---------hhHHHHHHHHHHHHccCCCCeEEEc--CC-ccccCHHHHHHHHhc--CCCEEeccccc-CHhHHHHHccCc
Confidence 1235788899999886666665543 23 34 78999999999 99999999999 9999999996 6
Q ss_pred CCHHHHHHHHHHHHHh-CCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHH
Q 041524 391 YTREAYLDLVQKIRQI-IPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~-~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k 469 (524)
++.++.+++++.+++. .+|+.+.+.+|+| +|||++|+.+++..+.+++++.+.+..|-.--..++ .|..-+.
T Consensus 275 atYe~sLe~Lr~AKe~f~~gi~tcSGiIVG-LGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~------~V~~yv~ 347 (398)
T PTZ00413 275 ASYRQSLKVLEHVKEFTNGAMLTKSSIMLG-LGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRL------KVSRYAH 347 (398)
T ss_pred CCHHHHHHHHHHHHHHhcCCceEeeeeEec-CCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccC------CceeccC
Confidence 8999999999999998 5899999999999 599999999999999999999999877743222222 2333344
Q ss_pred HHHHHHHHHHHHHH
Q 041524 470 QRRLTELIEAFRES 483 (524)
Q Consensus 470 ~~Rl~~l~~~~~~~ 483 (524)
.+.++.+.+...+.
T Consensus 348 P~~F~~~~~~a~~~ 361 (398)
T PTZ00413 348 PKEFEMWEEEAMKM 361 (398)
T ss_pred HHHHHHHHHHHHHc
Confidence 55555555544443
No 87
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.55 E-value=6.4e-13 Score=137.39 Aligned_cols=199 Identities=13% Similarity=0.174 Sum_probs=147.3
Q ss_pred eEEEEEEcccCCccCcccccCCC--CCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFT--RGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~--~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
.+..++++.+|+.+|.||..... ..+....+.+++.+-++.+.+.|++.|.|+|.....+
T Consensus 14 ~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr------------------ 75 (329)
T PRK13361 14 TYLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVR------------------ 75 (329)
T ss_pred CeEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCcc------------------
Confidence 35667889999999999985422 1234467889999888888888999999998443322
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
..+.++++.+.+......+.+++ +...+ .+.++.|+++ |+.++.++++|.+++..+.++++.
T Consensus 76 --------------~dl~~li~~i~~~~~l~~i~itT-NG~ll-~~~~~~L~~a--Gl~~v~ISlDs~~~e~~~~i~~~g 137 (329)
T PRK13361 76 --------------RGCDQLVARLGKLPGLEELSLTT-NGSRL-ARFAAELADA--GLKRLNISLDTLRPELFAALTRNG 137 (329)
T ss_pred --------------ccHHHHHHHHHhCCCCceEEEEe-ChhHH-HHHHHHHHHc--CCCeEEEEeccCCHHHhhhhcCCC
Confidence 24788888887653322555553 33334 4688999998 999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHH
Q 041524 392 TREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQ 470 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~ 470 (524)
+.+++++.++.++++ |+ .+..++++ ++|++.+++.+.++++.+++++. .+..|.|..+..-+. ....++.+...
T Consensus 138 ~~~~vl~~i~~~~~~--Gi~~v~in~v~-~~g~N~~ei~~~~~~~~~~gi~~-~~ie~mP~g~~~~~~-~~~~~~~~e~~ 212 (329)
T PRK13361 138 RLERVIAGIDAAKAA--GFERIKLNAVI-LRGQNDDEVLDLVEFCRERGLDI-AFIEEMPLGEIDERR-RARHCSSDEVR 212 (329)
T ss_pred CHHHHHHHHHHHHHc--CCCceEEEEEE-ECCCCHHHHHHHHHHHHhcCCeE-EEEecccCCCccchh-hccCcCHHHHH
Confidence 999999999999998 77 56655543 58999999999999999999974 566777875433221 12345554444
Q ss_pred HHH
Q 041524 471 RRL 473 (524)
Q Consensus 471 ~Rl 473 (524)
+.+
T Consensus 213 ~~l 215 (329)
T PRK13361 213 AII 215 (329)
T ss_pred HHH
Confidence 444
No 88
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.54 E-value=6.7e-13 Score=141.90 Aligned_cols=197 Identities=14% Similarity=0.093 Sum_probs=147.7
Q ss_pred EEEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHCCCcEEEEEeccC-CCCCCccCCccccCCCCcccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKEGVKEVTLLGQNV-NSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~-~~y~~~~~~~~~~~~g~~~~~ 311 (524)
.+.|.+|..|+++|.||.+....+. ....++|+|++|++.+.+.|++++.+++..- ..+
T Consensus 85 fapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~------------------ 146 (469)
T PRK09613 85 FAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNC------------------ 146 (469)
T ss_pred EEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCC------------------
Confidence 3556689999999999998754332 2356999999999999999999999875321 111
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhC---Cc-eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEF---PE-MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~---~~-~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m 387 (524)
....+.++++.+.+.. +. .++.+ +...++.+-++.|+++ |+.++++-.||.++++.+.+
T Consensus 147 ------------~~eyi~e~i~~I~~~~~~~g~i~~v~i---nig~lt~eey~~Lkea--Gv~~~~l~qETY~~ety~~~ 209 (469)
T PRK09613 147 ------------DIEYILESIKTIYSTKHGNGEIRRVNV---NIAPTTVENYKKLKEA--GIGTYQLFQETYHKPTYEKM 209 (469)
T ss_pred ------------CHHHHHHHHHHHHHhccccCcceeeEE---EeecCCHHHHHHHHHc--CCCEEEeccccCCHHHHHhc
Confidence 1245777777777642 11 13333 3445899999999999 99999999999999999998
Q ss_pred CC---CCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHc------CCCeEEEEeeecCCCChhc
Q 041524 388 RR---GYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAV------GYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 388 ~R---~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l------~~d~~~i~~~sp~pGT~~~ 457 (524)
.. .++.+.-+++++.++++ |+. +.+.+|+|+++ +.+|...++..++.+ +++.+++-.+.|.+|||+.
T Consensus 210 hp~g~k~~y~~Rl~t~~rA~~a--Gi~~Vg~G~L~GLge-~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~ 286 (469)
T PRK09613 210 HPSGPKSDYDWRLTAMDRAMEA--GIDDVGIGVLFGLYD-YKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLE 286 (469)
T ss_pred CCCCCCCCHHHHHHHHHHHHHc--CCCeeCeEEEEcCCC-CHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcc
Confidence 54 57899999999999999 997 99999999965 555555555555555 5777888889999999985
Q ss_pred ccCCCCCCHHHHH
Q 041524 458 RNYVDDVPEEVKQ 470 (524)
Q Consensus 458 ~~~~~~v~~~~k~ 470 (524)
. .+..+++....
T Consensus 287 ~-~~~~vsd~e~l 298 (469)
T PRK09613 287 N-FPYLVSDEDFK 298 (469)
T ss_pred c-CCCCCCHHHHH
Confidence 3 33335554443
No 89
>PRK05927 hypothetical protein; Provisional
Probab=99.53 E-value=2e-13 Score=141.60 Aligned_cols=187 Identities=13% Similarity=0.125 Sum_probs=147.8
Q ss_pred EEEEcccCCccCcccccCCCCCc-c-ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccC
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGR-E-RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEG 314 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~-~-Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g 314 (524)
.+.++.-|+.+|.||++....+. . ...++++|++.++...+.|+++|.|++..-..+
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~--------------------- 106 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQL--------------------- 106 (350)
T ss_pred CCccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCC---------------------
Confidence 35679999999999998654332 1 257899999999999999999999875321111
Q ss_pred cccchhcccchhhHHHHHHHHHhhCCceEEEEe--------cCCCCCCCHHHHHHHHcCCCCcceeec-CcCCcCHHHHh
Q 041524 315 FNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYT--------SPHPKDFPDELLYIMRDRPNVCKYIHL-PAQTGNSAVLE 385 (524)
Q Consensus 315 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~--------s~~p~~~~~elL~~l~~~~~G~~~i~i-giESgs~~vL~ 385 (524)
....+.++++.+.+..|.+.+..- .......++|.++.|+++ |..+++= ++|+.++.+.+
T Consensus 107 ---------~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~a--Gl~~l~g~~~Et~~~~~~~ 175 (350)
T PRK05927 107 ---------GIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDA--GQRTIPGGGAEILSERVRK 175 (350)
T ss_pred ---------CHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHc--CcccCCCCCchhCCHHHhh
Confidence 123577888888876554432111 122466789999999999 9977665 89999999999
Q ss_pred hhCCC-CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC----CCChhcc
Q 041524 386 RMRRG-YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR----ERTHAHR 458 (524)
Q Consensus 386 ~m~R~-~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~----pGT~~~~ 458 (524)
.+..+ .+.+++++.++.+++. |+.+.+.+|+|+ |||.+|..+.+..+++++-+..++..|.|. +|||+..
T Consensus 176 ~~~p~k~~~~~rl~~i~~A~~l--Gi~~~sg~l~G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~ 250 (350)
T PRK05927 176 IISPKKMGPDGWIQFHKLAHRL--GFRSTATMMFGH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGR 250 (350)
T ss_pred ccCCCCCCHHHHHHHHHHHHHc--CCCcCceeEEee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCcccc
Confidence 99874 4789999999999999 999999999999 999999999999999998666667667665 6899864
No 90
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.52 E-value=1.6e-12 Score=133.82 Aligned_cols=184 Identities=12% Similarity=0.142 Sum_probs=144.1
Q ss_pred CCCeEEEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHC-CCcEEEEEeccCCCCCCccCCccccCCCC
Q 041524 231 KNSVTAFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKE-GVKEVTLLGQNVNSYNDTSGMEKEVEPGA 307 (524)
Q Consensus 231 ~~~~~a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~-G~kei~l~d~n~~~y~~~~~~~~~~~~g~ 307 (524)
....++.+.+++||+.+|.||..+...|. ....+.+++.+-++++.+. |+++|.|.|.+....
T Consensus 85 kyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~-------------- 150 (321)
T TIGR03822 85 RYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVL-------------- 150 (321)
T ss_pred CCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC--------------
Confidence 34457788899999999999987654443 2334667777777777755 899999998665433
Q ss_pred ccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEec----CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHH
Q 041524 308 NWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTS----PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAV 383 (524)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s----~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~v 383 (524)
...++.++++.+.+......+++.+ ..|..+++++++.|+++ |+ .+.+++++..++-
T Consensus 151 ----------------~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~--g~-~v~i~l~~~h~~e 211 (321)
T TIGR03822 151 ----------------SPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS--GK-TVYVALHANHARE 211 (321)
T ss_pred ----------------CHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc--CC-cEEEEecCCChhh
Confidence 0246889999988754334677765 36778999999999998 85 4889999987654
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHhCCCcEEEE-eEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 384 LERMRRGYTREAYLDLVQKIRQIIPDVGLSS-DFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 384 L~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~-~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
+ .++..++++.++++ |+.+.. .+++.-.+++.+++.++++++.++++...+++.+.|.+||..+
T Consensus 212 l--------~~~~~~ai~~L~~~--Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f 276 (321)
T TIGR03822 212 L--------TAEARAACARLIDA--GIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHF 276 (321)
T ss_pred c--------CHHHHHHHHHHHHc--CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccc
Confidence 3 38899999999999 998765 4455446999999999999999999999999999999998655
No 91
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.50 E-value=2.9e-12 Score=132.81 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=143.9
Q ss_pred eEEEEEEcccCCccCcccccCCC----CCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFT----RGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~----~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
.+..|+++.+|+.+|.||..... ..+....+.+++.+.++.+.+.|++.|.|+|......
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~---------------- 73 (334)
T TIGR02666 10 DYLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLR---------------- 73 (334)
T ss_pred CeEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccccc----------------
Confidence 35667889999999999987541 1134567899999999999889999999988544322
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
.++.++++.+.+..+...+.+++ +.. +.++.++.|+++ |+.++.|+++|.+++..+.+.+
T Consensus 74 ----------------~~l~~li~~i~~~~gi~~v~itT-NG~-ll~~~~~~L~~~--gl~~v~ISld~~~~~~~~~i~~ 133 (334)
T TIGR02666 74 ----------------KDLVELVARLAALPGIEDIALTT-NGL-LLARHAKDLKEA--GLKRVNVSLDSLDPERFAKITR 133 (334)
T ss_pred ----------------CCHHHHHHHHHhcCCCCeEEEEe-Cch-hHHHHHHHHHHc--CCCeEEEecccCCHHHhheeCC
Confidence 24788888877643322666654 333 335688999998 9999999999999999999985
Q ss_pred -CCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 390 -GYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 390 -~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
+.+.+++++.++.+++. |+. +...+++ ++|.+.+++.+.++++.+++++ +.+..|.|..++..+
T Consensus 134 ~~~~~~~vl~~i~~l~~~--G~~~v~in~vv-~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~~~ 199 (334)
T TIGR02666 134 RGGRLEQVLAGIDAALAA--GLEPVKLNTVV-MRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGNGW 199 (334)
T ss_pred CCCCHHHHHHHHHHHHHc--CCCcEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCccc
Confidence 67999999999999999 775 6666543 4789999999999999999986 677788888777544
No 92
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.50 E-value=1.1e-12 Score=148.97 Aligned_cols=186 Identities=16% Similarity=0.244 Sum_probs=149.2
Q ss_pred EEEEcccCCccCcccccCCCCC--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccC
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRG--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEG 314 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g 314 (524)
.|..|.+|+.+|.||++....+ .....++|+|+++++...+.|+++|.+++..-..+
T Consensus 529 ~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~--------------------- 587 (843)
T PRK09234 529 NINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPEL--------------------- 587 (843)
T ss_pred ceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc---------------------
Confidence 3556999999999999875422 23447999999999999999999999986321101
Q ss_pred cccchhcccchhhHHHHHHHHHhhCCceEEEEecC--------CCCCCCHHHHHHHHcCCCCcceeec-CcCCcCHHHHh
Q 041524 315 FNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP--------HPKDFPDELLYIMRDRPNVCKYIHL-PAQTGNSAVLE 385 (524)
Q Consensus 315 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~--------~p~~~~~elL~~l~~~~~G~~~i~i-giESgs~~vL~ 385 (524)
....+.++++.+++..|.+.+...++ ......+|.++.|+++ |+..++- +.|-.++++.+
T Consensus 588 ---------~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeA--GLds~pgt~aeil~d~vr~ 656 (843)
T PRK09234 588 ---------PGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALREA--GLDTIPGTAAEILDDEVRW 656 (843)
T ss_pred ---------CHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHHh--CcCccCCCchhhCCHHHHh
Confidence 12467889999988877766643321 1123568999999999 9999876 66778888877
Q ss_pred hhCC-CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeec----CCCChhc
Q 041524 386 RMRR-GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM----RERTHAH 457 (524)
Q Consensus 386 ~m~R-~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp----~pGT~~~ 457 (524)
.+.+ ..+.+++++.++.+++. |+.+.+.+|+|+ +||.+++.+.+.++++++.+...+..|.| .|+||++
T Consensus 657 ~i~p~k~~~~~wle~i~~Ah~l--Gi~~~stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~ 730 (843)
T PRK09234 657 VLTKGKLPTAEWIEVVTTAHEV--GLRSSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLY 730 (843)
T ss_pred hcCCCCCCHHHHHHHHHHHHHc--CCCcccceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcc
Confidence 7775 45889999999999999 999999999997 79999999999999999999888888888 6788886
No 93
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.49 E-value=3.8e-12 Score=130.01 Aligned_cols=178 Identities=12% Similarity=0.143 Sum_probs=139.8
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc-cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR-ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~-~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
.+..|+++.+|+.+|.||..+..... .+..+.+++.+.++.+.+.|++.|.|+|......
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~------------------- 70 (302)
T TIGR02668 10 TSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLR------------------- 70 (302)
T ss_pred CeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccc-------------------
Confidence 45788999999999999987543222 3568899998888888888999999988554332
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT 392 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t 392 (524)
..+.++++.+.+. +...+.+++ +.. +.++.++.++++ |+.+|.++++|.+++..+.++++.+
T Consensus 71 -------------~~l~~iv~~l~~~-g~~~v~i~T-NG~-ll~~~~~~l~~~--g~~~v~iSld~~~~~~~~~i~~~~~ 132 (302)
T TIGR02668 71 -------------KDLIEIIRRIKDY-GIKDVSMTT-NGI-LLEKLAKKLKEA--GLDRVNVSLDTLDPEKYKKITGRGA 132 (302)
T ss_pred -------------cCHHHHHHHHHhC-CCceEEEEc-Cch-HHHHHHHHHHHC--CCCEEEEEecCCCHHHhhhccCCCc
Confidence 2477788877664 322566654 332 336788888888 9999999999999999999998889
Q ss_pred HHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCC
Q 041524 393 REAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRE 452 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~p 452 (524)
.+++++.++.+++. |+. +...+++ +||++.+++.+.++++.+++++ +.+..|.|..
T Consensus 133 ~~~vl~~i~~~~~~--G~~~v~i~~v~-~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~ 189 (302)
T TIGR02668 133 LDRVIEGIESAVDA--GLTPVKLNMVV-LKGINDNEIPDMVEFAAEGGAI-LQLIELMPPG 189 (302)
T ss_pred HHHHHHHHHHHHHc--CCCcEEEEEEE-eCCCCHHHHHHHHHHHHhcCCE-EEEEEEeECC
Confidence 99999999999999 765 6555443 6899999999999999999886 6777777754
No 94
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.42 E-value=3.1e-11 Score=126.67 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=144.2
Q ss_pred EEEEEEcccCCccCcccccCCCC---CccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTR---GRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~---G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
+..|+++.+|+.+|.||..+... .+....+.+++.+.++.+.+.|++.|.|+|.....+
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr------------------ 120 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLR------------------ 120 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcch------------------
Confidence 45678899999999999764211 112457889999998888888999999988443222
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
..+.++++.+.+..+...+.+++ +...+ ++.++.|+++ |...|.+.++|.+++..+.+.++.
T Consensus 121 --------------~dl~eli~~l~~~~gi~~i~itT-NG~lL-~~~~~~L~~a--Gld~VnISLDsl~~e~~~~itr~~ 182 (373)
T PLN02951 121 --------------KDIEDICLQLSSLKGLKTLAMTT-NGITL-SRKLPRLKEA--GLTSLNISLDTLVPAKFEFLTRRK 182 (373)
T ss_pred --------------hhHHHHHHHHHhcCCCceEEEee-CcchH-HHHHHHHHhC--CCCeEEEeeccCCHHHHHHHhcCC
Confidence 24788888887653333455553 33333 3557888888 999999999999999999998877
Q ss_pred CHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHH
Q 041524 392 TREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQ 470 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~ 470 (524)
..+.+++.++.+++. |+ .+...+ +-++|++.+++.+.++++++.+++ +.+..|.|..|++... ...++.....
T Consensus 183 ~~~~vl~~I~~a~~~--G~~~vkin~-vv~~g~N~~Ei~~li~~a~~~gi~-vr~ie~mP~~~~~~~~--~~~~~~~ei~ 256 (373)
T PLN02951 183 GHDRVLESIDTAIEL--GYNPVKVNC-VVMRGFNDDEICDFVELTRDKPIN-VRFIEFMPFDGNVWNV--KKLVPYAEMM 256 (373)
T ss_pred CHHHHHHHHHHHHHc--CCCcEEEEE-EecCCCCHHHHHHHHHHHHhCCCe-EEEEEcccCCCCcccc--ccCCCHHHHH
Confidence 889999999999998 65 344433 344788999999999999998865 7788899999885432 2234444443
Q ss_pred HHH
Q 041524 471 RRL 473 (524)
Q Consensus 471 ~Rl 473 (524)
+++
T Consensus 257 ~~l 259 (373)
T PLN02951 257 DRI 259 (373)
T ss_pred HHH
Confidence 333
No 95
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.39 E-value=3.7e-11 Score=116.69 Aligned_cols=214 Identities=23% Similarity=0.361 Sum_probs=160.8
Q ss_pred CCCeEEEEEEcccCCccCcccccCCCCCccccCC---hHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCC
Q 041524 231 KNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRP---VESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGA 307 (524)
Q Consensus 231 ~~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~---~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~ 307 (524)
..+...|+-.+.-|..+|.||.+.+ |+.-..+ |+.|.+-|+.+ |.+++++++-+ ||+.
T Consensus 67 ~~~tATFmImG~~CTR~C~FC~V~~--g~P~~lD~~EP~rvAeaV~~m---gLkyVViTsVd----RDDL---------- 127 (306)
T COG0320 67 SRGTATFMILGDICTRRCRFCDVKT--GRPNPLDPDEPERVAEAVKDM---GLKYVVITSVD----RDDL---------- 127 (306)
T ss_pred cCCceEEeeccchhccCCCccccCC--CCCCCCCCchHHHHHHHHHHh---CCCeEEEEeec----cccc----------
Confidence 3556678878999999999999954 4433333 55555555544 99999988633 3322
Q ss_pred ccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh
Q 041524 308 NWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387 (524)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m 387 (524)
.+| +...|++.+++|.+..|...+.+-.++-.. .++.|+.+.++ +-.-+.=.+|+. ++....+
T Consensus 128 ----~DG---------GA~hfa~~i~~Ire~~P~t~iEvL~PDF~G-~~~al~~v~~~--~pdV~nHNvETV-prL~~~V 190 (306)
T COG0320 128 ----PDG---------GAQHFAECIRAIRELNPQTTIEVLTPDFRG-NDDALEIVADA--GPDVFNHNVETV-PRLYPRV 190 (306)
T ss_pred ----ccc---------chHHHHHHHHHHHhhCCCceEEEeCccccC-CHHHHHHHHhc--Ccchhhcccccc-hhccccc
Confidence 111 246799999999999988777665443322 57788888888 777777788874 5677788
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHH
Q 041524 388 RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEE 467 (524)
Q Consensus 388 ~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~ 467 (524)
+++.+.+.-+++++.+++..|.+...+.+|+|+ |||.+++.++++-+++.++|.+.+-.|.- | |.-|. .|..-
T Consensus 191 Rp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-P-S~~Hl----pV~ry 263 (306)
T COG0320 191 RPGATYERSLSLLERAKELGPDIPTKSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYLQ-P-SRKHL----PVQRY 263 (306)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCcccccceeeec-CCcHHHHHHHHHHHHHcCCCEEEeccccC-C-ccccC----Cceec
Confidence 899999999999999999999999999999999 99999999999999999999999988842 2 33332 34555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041524 468 VKQRRLTELIEAFRESTGQC 487 (524)
Q Consensus 468 ~k~~Rl~~l~~~~~~~~~~~ 487 (524)
+..+.+.++.+...+..+.+
T Consensus 264 v~PeeF~~~~~~a~~~GF~~ 283 (306)
T COG0320 264 VTPEEFDELEEVAEEMGFLH 283 (306)
T ss_pred cCHHHHHHHHHHHHHccchh
Confidence 66677777777777665543
No 96
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.35 E-value=7.5e-11 Score=116.01 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=124.2
Q ss_pred EEEEEcccCCccCcccccCCCCC--ccccCChHHHHHHHHHHHHCC---CcEEEEEeccCCCCCCccCCccccCCCCccc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG--RERSRPVESIVKEVDELWKEG---VKEVTLLGQNVNSYNDTSGMEKEVEPGANWR 310 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G--~~Rsr~~e~Iv~Ei~~l~~~G---~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~ 310 (524)
.++-++.|||++|.||..+..+. ..+..+++++++++..+.+.+ .+.|.|.|.....+
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~----------------- 79 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQ----------------- 79 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccC-----------------
Confidence 44456789999999998764432 235689999999999876542 25688887554433
Q ss_pred cccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
...+.++++.+.+.. ..+.+.+.- ...+++.+.+++. .+..+.+++++.+++..+.+++
T Consensus 80 --------------~~~~~~li~~~~~~g--~~~~i~TNG~~~~~~~~~~~ll~----~~d~v~isl~~~~~~~~~~~~g 139 (235)
T TIGR02493 80 --------------PEFLSELFKACKELG--IHTCLDTSGFLGGCTEAADELLE----YTDLVLLDIKHFNPEKYKKLTG 139 (235)
T ss_pred --------------HHHHHHHHHHHHHCC--CCEEEEcCCCCCccHHHHHHHHH----hCCEEEEeCCCCCHHHHHHHHC
Confidence 122457777776642 344454321 1123444444443 3457999999999999988765
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCC--CCHHHHHHHHHHHHHcC-CCeEEEEeeecCCCChhc
Q 041524 390 GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCG--ETEEEHADTLTLMKAVG-YDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 390 ~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~Pg--ET~ed~~~tl~~l~~l~-~d~~~i~~~sp~pGT~~~ 457 (524)
. +.+.+.+.++.+++. |+.+...+++ +|| ++.+++.+.++++.+++ ...+.+.+|.|. |++.|
T Consensus 140 ~-~~~~v~~~i~~l~~~--g~~~~v~~vv-~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~-g~~~~ 205 (235)
T TIGR02493 140 V-SLQPTLDFAKYLAKR--NKPIWIRYVL-VPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQL-GVYKW 205 (235)
T ss_pred C-CcHHHHHHHHHHHhC--CCcEEEEEee-eCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcc-cHHHH
Confidence 5 889999999999998 7776666555 375 57899999999999998 466767666653 55544
No 97
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.31 E-value=5.6e-10 Score=117.67 Aligned_cols=177 Identities=11% Similarity=0.135 Sum_probs=139.5
Q ss_pred CeEEEEEEcccCCccCcccccCCCC-CccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTR-GRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~-G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
.....++++..|+.+|.||...... ...+..+.+++.+-|+.+.+.|+..|.|.|.....+
T Consensus 15 P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~------------------ 76 (378)
T PRK05301 15 PLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLR------------------ 76 (378)
T ss_pred CeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCc------------------
Confidence 4567899999999999999865332 224567888888888888788999999987554433
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC-
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG- 390 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~- 390 (524)
..+.++++.+.+.. +.+.+. .+...++++.++.|+++ |+..|.|++++.++++.+.++++
T Consensus 77 --------------~~~~~il~~~~~~g--~~~~i~-TNG~ll~~~~~~~L~~~--g~~~v~iSldg~~~e~~d~irg~~ 137 (378)
T PRK05301 77 --------------KDLEELVAHARELG--LYTNLI-TSGVGLTEARLAALKDA--GLDHIQLSFQDSDPELNDRLAGTK 137 (378)
T ss_pred --------------hhHHHHHHHHHHcC--CcEEEE-CCCccCCHHHHHHHHHc--CCCEEEEEecCCCHHHHHHHcCCC
Confidence 24778888876542 344444 45667899999999998 99999999999999999988765
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeec
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp 450 (524)
.+.+.+++.++.+++. |+.+...++ ++.++.+++.+.++++.+++++.+.+..+.+
T Consensus 138 g~f~~~~~~i~~l~~~--g~~v~i~~v--v~~~N~~~i~~~~~~~~~lgv~~i~~~~~~~ 193 (378)
T PRK05301 138 GAFAKKLAVARLVKAH--GYPLTLNAV--IHRHNIDQIPRIIELAVELGADRLELANTQY 193 (378)
T ss_pred chHHHHHHHHHHHHHC--CCceEEEEE--eecCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 4899999999999998 777665544 4678999999999999999999887765443
No 98
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.30 E-value=2.5e-10 Score=118.81 Aligned_cols=187 Identities=14% Similarity=0.217 Sum_probs=131.7
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHH------CCCcEEEEEeccCCCCCCccCCccccCC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWK------EGVKEVTLLGQNVNSYNDTSGMEKEVEP 305 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~------~G~kei~l~d~n~~~y~~~~~~~~~~~~ 305 (524)
.+.+..|++++||+.+|.||..+.. |..|..++++|+++|..... .|+..|+|.|.
T Consensus 107 ~~~t~ciSsqvGC~~~C~FC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~Gm----------------- 168 (356)
T PRK14455 107 YGNSVCVTTQVGCRIGCTFCASTLG-GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGI----------------- 168 (356)
T ss_pred CCceEEEECCCCCCCCCCcCCCCCC-CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecc-----------------
Confidence 4677899999999999999998754 45788999999999986432 25778888761
Q ss_pred CCccccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCH
Q 041524 306 GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNS 381 (524)
Q Consensus 306 g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~ 381 (524)
|.++. +...+.++++.+.+..+ ...+.+++. .+.+.+.++.... +-..+.+.+.+.++
T Consensus 169 GEPLl-------------n~~~v~~~l~~l~~~~g~~~s~r~itvsT~---G~~~~i~~l~d~~--l~~~LaiSL~a~~~ 230 (356)
T PRK14455 169 GEPFD-------------NYDNVMDFLRIINDDKGLAIGARHITVSTS---GIAPKIYDFADEG--LQINLAISLHAPNN 230 (356)
T ss_pred ccccC-------------CHHHHHHHHHHHhcccCcccCCCceEEEec---CchHhHHHHHhcc--cCeeEEeccCCCCH
Confidence 32220 01346677777665321 114444432 2334555555432 22347799999999
Q ss_pred HHHhh---hCCCCCHHHHHHHHHHHHHhCCCcEEEE-eEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 382 AVLER---MRRGYTREAYLDLVQKIRQIIPDVGLSS-DFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 382 ~vL~~---m~R~~t~e~~~~~v~~ir~~~pgi~i~~-~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
+..+. ++|+++.+++++.++.+.+.. +..+.. +++++-..++++++++..+|+..++ ..+.+-+|.|.++.+.
T Consensus 231 e~r~~l~pi~~~~~l~~Il~~l~~~~~~~-~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky 307 (356)
T PRK14455 231 ELRSSLMPINRAYPLEKLMEAIEYYIEKT-NRRVTFEYILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDY 307 (356)
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHHhc-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCC
Confidence 99985 678899999999999886641 344443 5555556899999999999999987 5688899999887643
No 99
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.29 E-value=1.7e-10 Score=119.65 Aligned_cols=184 Identities=15% Similarity=0.194 Sum_probs=128.9
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC-CCcEEEEEeccCCCCCCccCCccccCCCCccc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE-GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR 310 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~ 310 (524)
.+.+..|++++||+.+|.||.... .|..|..++++|++++..+.+. ++++|.|+|. |.|+.
T Consensus 101 ~~~t~cvSsq~GC~~~C~FC~tg~-~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~-----------------GEPl~ 162 (349)
T PRK14463 101 DRNTLCISSQVGCAMGCAFCLTGT-FRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGM-----------------GEPLA 162 (349)
T ss_pred CCcEEEEEecCCcCCCCccCCCCC-CCCCCCCCHHHHHHHHHHHHhcCCccEEEEecC-----------------Ccchh
Confidence 467899999999999999998653 4557889999999999887653 7899998872 33320
Q ss_pred cccCcccchhcccchhhHHHHHHHHHhhC----CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEF----PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~----~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
+...+.+.++.+.+.. +..++.+++. .+.+++.++... +-..+.+.+.|.+++..+.
T Consensus 163 -------------n~~~vi~~l~~l~~~~gl~~s~r~itVsTn---Gl~~~i~~l~~~---~~~~LaiSL~a~~~e~r~~ 223 (349)
T PRK14463 163 -------------NLDNVIPALQILTDPDGLQFSTRKVTVSTS---GLVPEMEELGRE---VTVNLAVSLNATTDEVRDR 223 (349)
T ss_pred -------------cHHHHHHHHHHhhcccccCcCCceEEEECC---CchHHHHHHhhc---cCeEEEEeCCCCCHHHHHH
Confidence 0122444444443211 1124555432 234555544432 3345778999999999999
Q ss_pred h---CCCCCHHHHHHHHHHHHHhCCCcEEEE-eEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCC
Q 041524 387 M---RRGYTREAYLDLVQKIRQIIPDVGLSS-DFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERT 454 (524)
Q Consensus 387 m---~R~~t~e~~~~~v~~ir~~~pgi~i~~-~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT 454 (524)
+ +|+++.+++.+++....... +-.+.. +++++-..++++++.+..+++..++. .+.+-+|.|.+|.
T Consensus 224 I~pink~~~l~~l~~a~~~~~~~~-~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~ 293 (349)
T PRK14463 224 IMPVNRRYPLAELLAACKAFPLPG-RRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGC 293 (349)
T ss_pred hcCcccCCCHHHHHHHHHHHHHhc-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCC
Confidence 7 78899999999888776642 234443 45555569999999999999999875 6889999888774
No 100
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.29 E-value=9e-11 Score=133.67 Aligned_cols=199 Identities=14% Similarity=0.188 Sum_probs=144.0
Q ss_pred EEEEEcccCCccCcccccCCCCC--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
.+|..+..|.++|.||.+....+ .....++|+|++.++...+.|++++.|++..-...+-. .-.+|--..
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~--------~~~~~l~~~ 144 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWP--------EAREWLDER 144 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccc--------ccccccccc
Confidence 56778999999999999865444 24567999999999999999999988875332111000 001111111
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh------h
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER------M 387 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~------m 387 (524)
|+.+ .-..+.++++.+.+..+.. . .+++..++.+-++.|+++ |.. +.+.+|+.+++..+. .
T Consensus 145 gy~~------~~ey~~~~~~~ik~~~gl~-p---~i~~G~ls~~E~~~Lk~~--g~s-~gl~lEt~~~~l~~~~g~~h~~ 211 (843)
T PRK09234 145 GYDS------TLDYVRAMAIRVLEETGLL-P---HLNPGVMSWSELARLKPV--APS-MGMMLETTSRRLFEEKGGPHYG 211 (843)
T ss_pred cccc------HHHHHHHHHHHHHHhcCCC-c---eeeeCCCCHHHHHHHHHh--cCc-CCCCHHHHHHHHHHhhcccccC
Confidence 2211 1134666777776542221 1 234567899999999998 775 678899888877543 2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHc-----CCCeEEEEeeecCCCChhcc
Q 041524 388 RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAV-----GYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 388 ~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l-----~~d~~~i~~~sp~pGT~~~~ 458 (524)
..+...++.++.++.+++. |+.+.+.+|+|+ |||.+|..+.+..++++ ++..+-+..|.|.||||+..
T Consensus 212 ~P~K~~~~RL~ti~~A~~l--Gi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~ 284 (843)
T PRK09234 212 SPDKDPAVRLRVLEDAGRL--SVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAG 284 (843)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCC
Confidence 2344677889999999999 999999999999 99999999999999998 46667788899999999964
No 101
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.29 E-value=7.8e-10 Score=115.73 Aligned_cols=174 Identities=13% Similarity=0.190 Sum_probs=135.3
Q ss_pred eEEEEEEcccCCccCcccccCCCCC-ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRG-RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G-~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
....++++..|+.+|.||..+.... +....+.+++.+-++.+.+.|+..|.|.|.....+
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~------------------- 67 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLAR------------------- 67 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccc-------------------
Confidence 5678999999999999998753222 23456788877777777777999999987544332
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC-C
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG-Y 391 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~-~ 391 (524)
..+.++++.+.+.. +.+.+. .+...++++.++.|+++ |+..|.|++++.++++.+++++. .
T Consensus 68 -------------~~~~~ii~~~~~~g--~~~~l~-TNG~ll~~e~~~~L~~~--g~~~v~iSldg~~~e~~d~~rg~~g 129 (358)
T TIGR02109 68 -------------PDLVELVAHARRLG--LYTNLI-TSGVGLTEARLDALADA--GLDHVQLSFQGVDEALADRIAGYKN 129 (358)
T ss_pred -------------ccHHHHHHHHHHcC--CeEEEE-eCCccCCHHHHHHHHhC--CCCEEEEeCcCCCHHHHHHhcCCcc
Confidence 24778888876642 344444 35566899999999998 99999999999999999988653 4
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEee
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAY 448 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~ 448 (524)
+.+.+.+.++.+++. |+.+...++ +..++.+++.+.++++.+++++.+.+...
T Consensus 130 ~f~~v~~~i~~l~~~--g~~v~v~~v--v~~~N~~~l~~~~~~~~~lg~~~i~~~~~ 182 (358)
T TIGR02109 130 AFEQKLAMARAVKAA--GLPLTLNFV--IHRHNIDQIPEIIELAIELGADRVELATT 182 (358)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEEE--eccCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 789999999999998 877655444 46789999999999999999998877543
No 102
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.29 E-value=2.8e-10 Score=117.57 Aligned_cols=182 Identities=18% Similarity=0.226 Sum_probs=136.0
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC-CCcEEEEEeccCCCCCCccCCccccCCCCccc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE-GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR 310 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~ 310 (524)
...++++.++.||+.+|+||......+.....+.+++.+.++.+.+. |+++|.|.|.+.....
T Consensus 111 y~~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~---------------- 174 (331)
T TIGR00238 111 YVNRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAK---------------- 174 (331)
T ss_pred cCCcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCC----------------
Confidence 34567899999999999999875443332233367777777777654 8999999986654330
Q ss_pred cccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecC----CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP----HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~----~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
...+.++++.+.++....++|+.+. .|..+++++++.|+++ |+..+.++.....+++
T Consensus 175 --------------d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~--~~~~~~vsh~nh~~Ei--- 235 (331)
T TIGR00238 175 --------------DHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASF--ELQLMLVTHINHCNEI--- 235 (331)
T ss_pred --------------HHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhc--CCcEEEEccCCChHhC---
Confidence 1247888888887654557888763 3556899999999998 8888877766555442
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCCcEE--EEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 387 MRRGYTREAYLDLVQKIRQIIPDVGL--SSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 387 m~R~~t~e~~~~~v~~ir~~~pgi~i--~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
.++..++++.++++ |+.+ .+-++-|. .++.+++.+..+.+.++++...+++.+.|..|+..+
T Consensus 236 ------~~~~~~ai~~L~~a--Gi~v~~qtvLl~gv-nD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f 299 (331)
T TIGR00238 236 ------TEEFAEAMKKLRTV--NVTLLNQSVLLRGV-NDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHF 299 (331)
T ss_pred ------CHHHHHHHHHHHHc--CCEEEeecceECCc-CCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccc
Confidence 27788999999999 7764 45666665 688899999999999999888888999999998433
No 103
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.23 E-value=1.6e-09 Score=113.11 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=133.6
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHH--------HCCCcEEEEEeccCCCCCCccCCcccc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELW--------KEGVKEVTLLGQNVNSYNDTSGMEKEV 303 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~--------~~G~kei~l~d~n~~~y~~~~~~~~~~ 303 (524)
...+..|+++-||+.+|+||..... |..|..+.++|++++..+. ..+++.|.|.|.
T Consensus 119 ~~~t~ciSsq~GCnl~C~FC~tg~~-g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGm--------------- 182 (368)
T PRK14456 119 ERMTACISSQAGCALRCSFCATGQM-GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGM--------------- 182 (368)
T ss_pred CceEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCc---------------
Confidence 4567899999999999999987643 5567788999999985432 246888998872
Q ss_pred CCCCccccccCcccchhcccchhhHHHHHHHHHhhC-----CceEEEEecCCCCCCCHHHHHHHHcCCCCcc-eeecCcC
Q 041524 304 EPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF-----PEMRFRYTSPHPKDFPDELLYIMRDRPNVCK-YIHLPAQ 377 (524)
Q Consensus 304 ~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~-----~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~-~i~igiE 377 (524)
|.|+. +...+.++++.+.+.. +..++.+++.- +.++ ++.|.++ |.. .+.+.+.
T Consensus 183 --GEPLl-------------n~d~v~~~i~~l~~~~~~~~is~r~ItisT~G---l~~~-i~~L~~~--gl~~~LaiSL~ 241 (368)
T PRK14456 183 --GEPLL-------------NTDNVFEAVLTLSTRKYRFSISQRKITISTVG---ITPE-IDRLATS--GLKTKLAVSLH 241 (368)
T ss_pred --Ccccc-------------CHHHHHHHHHHHhccccccCcCcCeeEEECCC---ChHH-HHHHHHc--CCCceEEEEec
Confidence 33220 0123666776665531 12255555432 4554 5777777 885 8999999
Q ss_pred CcCHHHHhhhC----CCCCHHHHHHHHHH-HHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCC
Q 041524 378 TGNSAVLERMR----RGYTREAYLDLVQK-IRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRE 452 (524)
Q Consensus 378 Sgs~~vL~~m~----R~~t~e~~~~~v~~-ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~p 452 (524)
|.+++..+.+. ++++.+++.++++. +.+....+.+..-+|-|+ .++++++.+.++|++.+. -.+.+-+|.|.+
T Consensus 242 a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~ 319 (368)
T PRK14456 242 SADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIV 319 (368)
T ss_pred CCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCC
Confidence 99999999773 58899999999985 455422344556666666 699999999999999875 358888999988
Q ss_pred CChh
Q 041524 453 RTHA 456 (524)
Q Consensus 453 GT~~ 456 (524)
+.+.
T Consensus 320 ~~~~ 323 (368)
T PRK14456 320 NIKF 323 (368)
T ss_pred CCCC
Confidence 8764
No 104
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.22 E-value=1.6e-09 Score=103.15 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=117.7
Q ss_pred CeEEEEEEcccCCccCcccccCCCCC--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRG--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR 310 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~ 310 (524)
+..+++.+++|||.+|.||..+...+ .....++++++++++... ..++.|.|.|.....+
T Consensus 15 g~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sGGEPll~----------------- 76 (191)
T TIGR02495 15 GKLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ-GLIDGVVITGGEPTLQ----------------- 76 (191)
T ss_pred CCeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc-CCCCeEEEECCcccCc-----------------
Confidence 44577778999999999999874322 235689999999998752 2467888887554433
Q ss_pred cccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCC-cceeecCcCCcCHHHHhhhCC
Q 041524 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNV-CKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G-~~~i~igiESgs~~vL~~m~R 389 (524)
.++.++++.+.+. ..++.+.+ +. ..++.++.|.++ | ..++.+++++.++...+.+++
T Consensus 77 ---------------~~l~~li~~~~~~--g~~v~i~T-Ng--~~~~~l~~l~~~--g~~~~v~isl~~~~~~~~~~~g~ 134 (191)
T TIGR02495 77 ---------------AGLPDFLRKVREL--GFEVKLDT-NG--SNPRVLEELLEE--GLVDYVAMDVKAPPEKYPELYGL 134 (191)
T ss_pred ---------------HhHHHHHHHHHHC--CCeEEEEe-CC--CCHHHHHHHHhc--CCCcEEEEeccCChHHHHHHHCC
Confidence 2377888887764 24555543 22 357888888887 7 488999999866656666676
Q ss_pred CCCHH-HHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC
Q 041524 390 GYTRE-AYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG 439 (524)
Q Consensus 390 ~~t~e-~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~ 439 (524)
+.+.+ ++.+.++.+++....+.+.+-++-|..+ ++++.+.++++.+.+
T Consensus 135 ~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~--~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 135 EKNGSNNILKSLEILLRSGIPFELRTTVHRGFLD--EEDLAEIATRIKENG 183 (191)
T ss_pred CCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCC--HHHHHHHHHHhccCC
Confidence 65554 9999999999983333455556656643 679999999998876
No 105
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.15 E-value=1.2e-09 Score=113.72 Aligned_cols=185 Identities=18% Similarity=0.284 Sum_probs=135.7
Q ss_pred EEEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
..+|..+.=|.++|+||.+....+. -...++|+|.++++.+.+.|+++|.|++..-... +
T Consensus 60 n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~------------~------ 121 (370)
T COG1060 60 NRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPEL------------S------ 121 (370)
T ss_pred eecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCc------------c------
Confidence 3456679999999999998765432 2457999999999999999999999987443222 1
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecC-------CCCC-CCHHHHHHHHcCCCCcceeec-CcCCcCHHH
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP-------HPKD-FPDELLYIMRDRPNVCKYIHL-PAQTGNSAV 383 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~-------~p~~-~~~elL~~l~~~~~G~~~i~i-giESgs~~v 383 (524)
...+.++++.+.+..|.+.+..-++ .... ..+|.++.|+++ |+..+-. |.|=.++++
T Consensus 122 ------------~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~a--Gldsmpg~~aeil~e~v 187 (370)
T COG1060 122 ------------LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEA--GLDSMPGGGAEILSEEV 187 (370)
T ss_pred ------------hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHc--CCCcCcCcceeechHHH
Confidence 1247788888887666554332221 1222 347789999998 9988654 445566777
Q ss_pred HhhhC-CCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC-----CCeEEEEeeecCCCC
Q 041524 384 LERMR-RGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG-----YDMAYMFAYSMRERT 454 (524)
Q Consensus 384 L~~m~-R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~-----~d~~~i~~~sp~pGT 454 (524)
.+.+. .+.+.+.+++.++.+++. ||..++.+++|. +||.+|..+++.-+++++ +..+.+-.|.|.+++
T Consensus 188 r~~~~p~K~~~~~wle~~~~Ah~l--GI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~ 261 (370)
T COG1060 188 RKIHCPPKKSPEEWLEIHERAHRL--GIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGP 261 (370)
T ss_pred HHhhCCCCCCHHHHHHHHHHHHHc--CCCccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCC
Confidence 66654 457999999999999999 999999999998 899999999999998874 222333344555665
No 106
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.15 E-value=6.4e-09 Score=108.23 Aligned_cols=185 Identities=15% Similarity=0.201 Sum_probs=130.0
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHH---HH-C--C---CcEEEEEeccCCCCCCccCCcccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDEL---WK-E--G---VKEVTLLGQNVNSYNDTSGMEKEV 303 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l---~~-~--G---~kei~l~d~n~~~y~~~~~~~~~~ 303 (524)
..+..|+++-|||.+|.||..+. .|..|..++++|++++... .+ . | ++.|+|.|.
T Consensus 101 r~t~CvSsq~GC~~~C~FC~tg~-~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGm--------------- 164 (354)
T PRK14460 101 RYTQCLSCQVGCAMGCTFCSTGT-MGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGM--------------- 164 (354)
T ss_pred ceeEEeeCCCCcCCCCccCCCCC-CCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecC---------------
Confidence 56678999999999999998653 3456788999999999533 32 2 2 567777761
Q ss_pred CCCCccccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCc
Q 041524 304 EPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTG 379 (524)
Q Consensus 304 ~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESg 379 (524)
|.++. +...+.+.++.+.+..+ ..++.+++.- + .+.++.|++. |...+.+.+.|.
T Consensus 165 --GEPLl-------------n~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G---~-~~~i~~L~~~--~l~~L~iSLha~ 223 (354)
T PRK14460 165 --GEPLL-------------NLDEVMRSLRTLNNEKGLNFSPRRITVSTCG---I-EKGLRELGES--GLAFLAVSLHAP 223 (354)
T ss_pred --CcccC-------------CHHHHHHHHHHHhhhhccCCCCCeEEEECCC---C-hHHHHHHHhC--CCcEEEEeCCCC
Confidence 33320 11235555555544222 1356665432 2 4578888887 888999999999
Q ss_pred CHHHHhhhCC---CCCHHHHHHHHHHHH-HhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 380 NSAVLERMRR---GYTREAYLDLVQKIR-QIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 380 s~~vL~~m~R---~~t~e~~~~~v~~ir-~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
+++..+.+.+ .++.++++++++... +....+.+..-+|-| ..++++++++..+++..++. .+.+-+|.|.+|.+
T Consensus 224 ~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~G-vNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~ 301 (354)
T PRK14460 224 NQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGG-VNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLP 301 (354)
T ss_pred CHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECC-CCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCC
Confidence 9999988754 478899988777543 331234455555555 58999999999999999875 58999999998876
Q ss_pred h
Q 041524 456 A 456 (524)
Q Consensus 456 ~ 456 (524)
.
T Consensus 302 y 302 (354)
T PRK14460 302 Y 302 (354)
T ss_pred C
Confidence 4
No 107
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.15 E-value=3.3e-09 Score=105.17 Aligned_cols=181 Identities=14% Similarity=0.169 Sum_probs=121.7
Q ss_pred EEEEEEcccCCccCcccccCCCC--CccccCChHHHHHHHHHHHH---CCCcEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTR--GRERSRPVESIVKEVDELWK---EGVKEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~--G~~Rsr~~e~Iv~Ei~~l~~---~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
..++....||+.+|.||..+..+ ...+..++++|+++++.... .....|+|.|.....+
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~---------------- 84 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQ---------------- 84 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcC----------------
Confidence 45566789999999999976532 22356799999999987643 2234677776443322
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
...+.++++.+.+.. ..+.+.+.--....++.++.+.. .+..+.+++.+.+++..+.+++
T Consensus 85 ---------------~~~~~~l~~~~k~~g--~~i~l~TNG~~~~~~~~~~~ll~---~~d~v~islk~~~~e~~~~~~g 144 (246)
T PRK11145 85 ---------------AEFVRDWFRACKKEG--IHTCLDTNGFVRRYDPVIDELLD---VTDLVMLDLKQMNDEIHQNLVG 144 (246)
T ss_pred ---------------HHHHHHHHHHHHHcC--CCEEEECCCCCCcchHHHHHHHH---hCCEEEECCCcCChhhcccccC
Confidence 112457777776642 34444432111113466676655 4678999999999998888754
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEE--EEeEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEeeecCCCCh
Q 041524 390 GYTREAYLDLVQKIRQIIPDVGL--SSDFICGFCGETEEEHADTLTLMKAVG-YDMAYMFAYSMRERTH 455 (524)
Q Consensus 390 ~~t~e~~~~~v~~ir~~~pgi~i--~~~fI~G~PgET~ed~~~tl~~l~~l~-~d~~~i~~~sp~pGT~ 455 (524)
.+.+..++.++.+++. |+.+ ..-+|-|+ .++++++++.++|+..++ +..+.+.+|.+.++.+
T Consensus 145 -~~~~~~l~~i~~l~~~--g~~v~i~~~li~g~-nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~ 209 (246)
T PRK11145 145 -VSNHRTLEFARYLAKR--NQKTWIRYVVVPGW-TDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHK 209 (246)
T ss_pred -CChHHHHHHHHHHHhC--CCcEEEEEEEECCC-CCCHHHHHHHHHHHHhcCCcceEEEecCCccchhH
Confidence 3557888888889888 5554 44445444 456779999999999885 5677788888877654
No 108
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.14 E-value=1.3e-08 Score=108.92 Aligned_cols=187 Identities=15% Similarity=0.197 Sum_probs=133.9
Q ss_pred eEEEEEEcccCCccCcccccCCC------CC-ccccCChHHHHHHHHHHHHC--CCcEEEEEeccCCCCCCccCCccccC
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFT------RG-RERSRPVESIVKEVDELWKE--GVKEVTLLGQNVNSYNDTSGMEKEVE 304 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~------~G-~~Rsr~~e~Iv~Ei~~l~~~--G~kei~l~d~n~~~y~~~~~~~~~~~ 304 (524)
-+..+.++.||+.+|.||...+. .| ..+..+++++++.++.+.+. +++.|.|.| +
T Consensus 24 ~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG-----~----------- 87 (442)
T TIGR01290 24 ARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAG-----P----------- 87 (442)
T ss_pred CEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEec-----C-----------
Confidence 45678999999999999986432 12 13557899999999988764 567777776 1
Q ss_pred CCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHH
Q 041524 305 PGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVL 384 (524)
Q Consensus 305 ~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL 384 (524)
|.++. +.....+++..+.+..+.+.+.+++ +. .+.++.++.|.+. |+..+.+.+.+.++++-
T Consensus 88 -GEPLl-------------~~e~~~~~l~~~~~~~~~i~i~lsT-NG-~~l~e~i~~L~~~--gvd~V~islka~d~e~~ 149 (442)
T TIGR01290 88 -GDPLA-------------NIGKTFQTLELVARQLPDVKLCLST-NG-LMLPEHVDRLVDL--GVGHVTITINAIDPAVG 149 (442)
T ss_pred -CCccc-------------CccccHHHHHHHHHhcCCCeEEEEC-CC-CCCHHHHHHHHHC--CCCeEEEeccCCCHHHH
Confidence 22210 0122456666666655556666654 32 3347888999888 99999999999999999
Q ss_pred hhh-------CCCCC--------HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeee
Q 041524 385 ERM-------RRGYT--------REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYS 449 (524)
Q Consensus 385 ~~m-------~R~~t--------~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~s 449 (524)
+.+ +|.++ .+..++.++.+.+. |+.+...+++ +||.+.+++.+..+++.+++...+.+.+|.
T Consensus 150 ~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~--G~~v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~ 226 (442)
T TIGR01290 150 EKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTER--GILVKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLI 226 (442)
T ss_pred hhcchhhccccccccCcchHHHHHHHHHHHHHHHHhC--CCeEEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCC
Confidence 875 23332 34556888888888 7664443222 267788999999999999998888999999
Q ss_pred cCC--CChhc
Q 041524 450 MRE--RTHAH 457 (524)
Q Consensus 450 p~p--GT~~~ 457 (524)
|.| |++..
T Consensus 227 ~~p~~G~~~~ 236 (442)
T TIGR01290 227 SAPEHGTVYG 236 (442)
T ss_pred CccccCCccC
Confidence 888 88753
No 109
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.11 E-value=1.1e-08 Score=103.83 Aligned_cols=197 Identities=15% Similarity=0.171 Sum_probs=149.1
Q ss_pred EEEEEEcccCCccCcccccCC--CCCc-cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPF--TRGR-ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~--~~G~-~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
..-++++.-|+++|.||.... .... .-..++|+|..=++...+.|++.|.|+|.....
T Consensus 12 ~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll------------------- 72 (322)
T COG2896 12 YLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLL------------------- 72 (322)
T ss_pred eEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchh-------------------
Confidence 345788999999999997643 1111 124578999888888888899999999844321
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
...+.+++..++.. ....+..++ + ..+-+...+.|+++ |.++|.+.+.|.+++..+.+.+..
T Consensus 73 -------------R~dl~eIi~~l~~~-~~~~islTT-N-G~~L~~~a~~Lk~A--Gl~rVNVSLDsld~e~f~~IT~~~ 134 (322)
T COG2896 73 -------------RKDLDEIIARLARL-GIRDLSLTT-N-GVLLARRAADLKEA--GLDRVNVSLDSLDPEKFRKITGRD 134 (322)
T ss_pred -------------hcCHHHHHHHHhhc-ccceEEEec-c-hhhHHHHHHHHHHc--CCcEEEeecccCCHHHHHHHhCCC
Confidence 24588898888876 555676663 2 23456788999999 999999999999999999998777
Q ss_pred CHHHHHHHHHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHH
Q 041524 392 TREAYLDLVQKIRQIIPDV---GLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEV 468 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~ 468 (524)
..+++++-++.+.++ |+ .+++.+| +|-+.+++.+.++|+...++. +.+--|.|.-....+. +...++...
T Consensus 135 ~~~~Vl~GI~~A~~~--Gl~pVKlN~Vv~---kgvNd~ei~~l~e~~~~~~~~-lrfIE~m~~g~~~~~~-~~~~~~~~~ 207 (322)
T COG2896 135 RLDRVLEGIDAAVEA--GLTPVKLNTVLM---KGVNDDEIEDLLEFAKERGAQ-LRFIELMPLGEGNSWR-LDKYLSLDE 207 (322)
T ss_pred cHHHHHHHHHHHHHc--CCCceEEEEEEe---cCCCHHHHHHHHHHHhhcCCc-eEEEEEeecCcccchh-hhccccHHH
Confidence 799999999999999 65 4566666 556999999999999999885 6676777765433332 334677777
Q ss_pred HHHHHHH
Q 041524 469 KQRRLTE 475 (524)
Q Consensus 469 k~~Rl~~ 475 (524)
..+++.+
T Consensus 208 i~~~l~~ 214 (322)
T COG2896 208 ILRKLEE 214 (322)
T ss_pred HHHHHHh
Confidence 7666665
No 110
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=99.11 E-value=4.2e-10 Score=100.13 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=73.7
Q ss_pred HHHHHHHHHHCCCeeccCC------------C-CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 93 MEIVLSIMKNAGYSEVINV------------P-ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~------------~-~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
..++++.|+++|+++...+ . .++|+|++++++.......++.+.+|+ ..
T Consensus 5 l~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~------------------~~ 66 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKE------------------VL 66 (127)
T ss_pred HHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHH------------------HC
Confidence 7889999999997632111 1 489999997665544433334443332 35
Q ss_pred CCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 160 HPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 160 p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
|+.+|++||+|++..|+.++. .+.+|+|+.||||.++++|++.+..|+
T Consensus 67 p~~~iv~GG~~~t~~p~~~~~-~~~~D~vv~GEgE~~~~~l~~~l~~g~ 114 (127)
T cd02068 67 PNVIVVVGGPHATFFPEEILE-EPGVDFVVIGEGEETFLKLLEELEEGE 114 (127)
T ss_pred CCCEEEECCcchhhCHHHHhc-CCCCCEEEECCcHHHHHHHHHHHHcCC
Confidence 889999999999999999644 578999999999999999999987764
No 111
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.11 E-value=1.2e-08 Score=105.17 Aligned_cols=185 Identities=12% Similarity=0.214 Sum_probs=131.3
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC-CCcEEEEEeccCCCCCCccCCccccCCCCccc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE-GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR 310 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~ 310 (524)
.+.+.+|+++-||+.+|.||..... |-.|..++++|++++..+.+. ++..|+|.|- |.|+.
T Consensus 101 ~r~t~cvSsQvGC~~~C~FC~Tg~~-g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGm-----------------GEPL~ 162 (345)
T PRK14466 101 DRATLCVSSQVGCKMNCLFCMTGKQ-GFTGNLTAAQILNQIYSLPERDKLTNLVFMGM-----------------GEPLD 162 (345)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHhhhhcCCCCeEEEeee-----------------CcCcc
Confidence 4678899999999999999997653 556788999999999988543 6889999872 33220
Q ss_pred cccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
+-..+.+.++.+....+ ..++.+++. .+.+.+-+++.+. . ..+.+.+-|.+++..+.
T Consensus 163 -------------N~d~vi~al~~l~~~~g~~~s~r~ItVsT~---G~~~~i~~l~~~~--~-~~LavSLha~~~e~R~~ 223 (345)
T PRK14466 163 -------------NLDEVLKALEILTAPYGYGWSPKRITVSTV---GLKKGLKRFLEES--E-CHLAISLHSPFPEQRRE 223 (345)
T ss_pred -------------cHHHHHHHHHHHhhccccCcCCceEEEEcC---CCchHHHHHhhcc--C-cEEEEEcCCCCHHHHHH
Confidence 01234444444433222 235666543 2344444444443 2 46789999999999998
Q ss_pred hC---CCCCHHHHHHHHHHHHHhCC-CcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 387 MR---RGYTREAYLDLVQKIRQIIP-DVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 387 m~---R~~t~e~~~~~v~~ir~~~p-gi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
+. |.++.++++++++...+... .+.+..-+|=|+ .+++|+..+..++++.++ .++++-+|.|.||.+
T Consensus 224 i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~~ 294 (345)
T PRK14466 224 LMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGL-NDSLKHAKELVKLLRGID-CRVNLIRFHAIPGVD 294 (345)
T ss_pred hcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCCC
Confidence 75 45889999999988665432 345556666676 899999999999999887 679999999999963
No 112
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.09 E-value=1.4e-08 Score=105.16 Aligned_cols=186 Identities=17% Similarity=0.247 Sum_probs=129.7
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC---CCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE---GVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~---G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
.+.+.+|+++-||+.+|.||..+. .|..|..++++|++++....+. ++..|+|.|. |.+
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~-~g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGm-----------------GEP 160 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGK-GGLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGM-----------------GEP 160 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCC-CCCccccCHHHHHHHHHHHHHHhcCCCCEEEEEec-----------------Ccc
Confidence 467899999999999999998754 3556778999999999887542 5778888872 333
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhC--CceEEEEecCCCCCCCHHHHHHHHcCCCC------c-ceeecCcCCc
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEF--PEMRFRYTSPHPKDFPDELLYIMRDRPNV------C-KYIHLPAQTG 379 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~--~~~~ir~~s~~p~~~~~elL~~l~~~~~G------~-~~i~igiESg 379 (524)
+. +...+.+.++.+.... +..++.+++.- +. +.++.+.+. + . ..+.+.+-+.
T Consensus 161 ll-------------n~~~v~~~i~~l~~~~~i~~r~itvST~G---~~-~~i~~L~~~--~~~~~~~~~~~laiSLha~ 221 (345)
T PRK14457 161 LL-------------NIDEVLAAIRCLNQDLGIGQRRITVSTVG---VP-KTIPQLAEL--AFQRLGRLQFTLAVSLHAP 221 (345)
T ss_pred cc-------------CHHHHHHHHHHHhcccCCccCceEEECCC---ch-hhHHHHHhh--hhhhcccCceEEEEEeCCC
Confidence 20 0123445555554321 12256665432 22 235555554 3 2 2488999999
Q ss_pred CHHHHhhh---CCCCCHHHHHHHHHH-HHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 380 NSAVLERM---RRGYTREAYLDLVQK-IRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 380 s~~vL~~m---~R~~t~e~~~~~v~~-ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
+++..+.+ +++++.+++++++.. +.+....+.+..=+|-|+ .+++|++++..+|+..++. ++.+-+|.|.++..
T Consensus 222 ~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~ 299 (345)
T PRK14457 222 NQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVE 299 (345)
T ss_pred CHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCC
Confidence 99999987 456888888877755 455523466777788787 7999999999999999865 68999999987754
Q ss_pred h
Q 041524 456 A 456 (524)
Q Consensus 456 ~ 456 (524)
.
T Consensus 300 ~ 300 (345)
T PRK14457 300 F 300 (345)
T ss_pred C
Confidence 3
No 113
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.07 E-value=1.9e-08 Score=104.87 Aligned_cols=186 Identities=17% Similarity=0.269 Sum_probs=128.4
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHH------CCCcEEEEEeccCCCCCCccCCccccCC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWK------EGVKEVTLLGQNVNSYNDTSGMEKEVEP 305 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~------~G~kei~l~d~n~~~y~~~~~~~~~~~~ 305 (524)
.+.+..|+++-||+.+|+||..+. .|..|..++++|++++..+.. .+++.|+|.|.
T Consensus 103 ~~~t~cVSsQ~GC~l~C~fC~t~~-~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGm----------------- 164 (355)
T TIGR00048 103 DRATVCVSSQVGCALGCTFCATAK-GGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGM----------------- 164 (355)
T ss_pred CCcEEEEecCCCCCCcCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecC-----------------
Confidence 467789999999999999998754 255688999999999876532 24677888762
Q ss_pred CCccccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCCCCcc-eeecCcCCcC
Q 041524 306 GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRPNVCK-YIHLPAQTGN 380 (524)
Q Consensus 306 g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~~G~~-~i~igiESgs 380 (524)
|.++. +...+.++++.+.+..+ ..++.+++.- +.+ .++.+.+. +.. .+.+.+-+.+
T Consensus 165 GEPLl-------------n~d~v~~~l~~l~~~~g~~i~~~~itisT~G---~~~-~i~~l~~~--~l~~~LaiSL~a~~ 225 (355)
T TIGR00048 165 GEPLL-------------NLNEVVKAMEIMNDDFGLGISKRRITISTSG---VVP-KIDILADK--MLQVALAISLHAPN 225 (355)
T ss_pred Cchhh-------------CHHHHHHHHHHhhcccccCcCCCeEEEECCC---chH-HHHHHHHh--CCCcEEEEEeCCCC
Confidence 33320 01235555655543222 1256665432 223 45555554 444 5789999999
Q ss_pred HHHHhhh---CCCCCHHHHHHHHHHH-HHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 381 SAVLERM---RRGYTREAYLDLVQKI-RQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 381 ~~vL~~m---~R~~t~e~~~~~v~~i-r~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
++..+.+ +|.++.+++++.++.. ++....+.+..-+|-|+ .++++++++..++++.++. ++.+-+|.|.++...
T Consensus 226 ~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~Gv-NDs~e~a~~La~llk~l~~-~VnLIPynp~~~~~~ 303 (355)
T TIGR00048 226 DELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGV-NDQVEHAEELAELLKGTKC-KVNLIPWNPFPEADY 303 (355)
T ss_pred HHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCC-CCCHHHHHHHHHHHhcCCC-ceEEEecccCCCCCC
Confidence 9999876 5778899999888754 44522345556666676 7889999999999999874 588889998887644
No 114
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=99.07 E-value=1.8e-10 Score=101.28 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=67.7
Q ss_pred HHHHHHHHHHCCCeeccCC-------------CCCCcEEEEee-ccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 93 MEIVLSIMKNAGYSEVINV-------------PENAEVIFINT-CAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~-------------~~~aDvv~int-c~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
..++++.|++.||++..-+ ..++|+|++++ ++..... +.+.++.+ ++.
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~---~~~l~~~~---------------k~~ 78 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPE---AKRLARAI---------------KER 78 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHH---HHHHHHHH---------------HTT
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHH---HHHHHHHH---------------Hhc
Confidence 8999999999999863221 14899999976 3333322 33333322 134
Q ss_pred CCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHH
Q 041524 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLL 201 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll 201 (524)
.|+.+|++||.+++..|+++++..+++|+|+.||||.++++|+
T Consensus 79 ~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~GegE~~~~~l~ 121 (121)
T PF02310_consen 79 NPNIPIVVGGPHATADPEEILREYPGIDYVVRGEGEEAFPELL 121 (121)
T ss_dssp CTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETTSSHHHH--
T ss_pred CCCCEEEEECCchhcChHHHhccCcCcceecCCChHHhhcccC
Confidence 6899999999999999999987557899999999999999985
No 115
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.07 E-value=2.7e-08 Score=102.69 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=131.5
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC---CCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE---GVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~---G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
.+.+..|+++.||+.+|.||..... |-.|..++++|++++....+. .++.|+|.|. |.|
T Consensus 95 ~~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGm-----------------GEP 156 (336)
T PRK14470 95 THHVVCLSSQAGCALGCAFCATGKL-GLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQ-----------------GEP 156 (336)
T ss_pred CCCEEEEeCCCCcCCCCccccCCCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEec-----------------Ccc
Confidence 3568999999999999999998643 445777999999999876543 5788988872 333
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhh----CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHH
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLE----FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVL 384 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL 384 (524)
+. +...+.++++.+... .+..++.+++.-. .+.+.+++.+. .-..|.+.+.+.+++..
T Consensus 157 ll-------------N~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~---~p~i~~l~~~~--~~~~LaiSLhA~~~e~r 218 (336)
T PRK14470 157 FL-------------NYDEVLRAAYALCDPAGARIDGRRISISTAGV---VPMIRRYTAEG--HKFRLCISLNAAIPWKR 218 (336)
T ss_pred cc-------------CHHHHHHHHHHHhCccccccCCCceEEEecCC---hHHHHHHHhcC--CCceEEEecCCCCHHHH
Confidence 20 012355556655532 1234666665322 34555555442 22569999999999999
Q ss_pred hhh---CCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCC
Q 041524 385 ERM---RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRER 453 (524)
Q Consensus 385 ~~m---~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pG 453 (524)
+.+ +|+++.++++++++...+....+.+..-+|-|+ .+++|++++..+++..+.. ++++-+|.|.++
T Consensus 219 ~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~Gv-NDseeda~~La~llk~l~~-~vnlI~~N~~~~ 288 (336)
T PRK14470 219 RALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGV-NVGEEDAAALGRLLAGIPV-RLNPIAVNDATG 288 (336)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecc-cCCHHHHHHHHHHHhcCCC-eEEEeccCCCCC
Confidence 987 456899999999999988743455666777787 5889999999999998754 577778888655
No 116
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.06 E-value=2.6e-08 Score=103.68 Aligned_cols=188 Identities=12% Similarity=0.169 Sum_probs=130.9
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHH---C------C--CcEEEEEeccCCCCCCccCCc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWK---E------G--VKEVTLLGQNVNSYNDTSGME 300 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~---~------G--~kei~l~d~n~~~y~~~~~~~ 300 (524)
.+.+..|+++-||+.+|.||..+. .|-.|..++++|+++|....+ . | +++|+|.|-
T Consensus 119 ~~~tlCvSsQvGC~m~C~FCatg~-~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGm------------ 185 (373)
T PRK14459 119 DRATLCISSQAGCGMACPFCATGQ-GGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGM------------ 185 (373)
T ss_pred CCceEEEEecCCCCCcCCCCCCCC-CCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecC------------
Confidence 457799999999999999999754 455788999999999987653 1 1 667888761
Q ss_pred cccCCCCccccccCcccchhcccchhhHHHHHHHHHhh--C--C--ceEEEEecCCCCCCCHHHHHHHHcCCCCcc-eee
Q 041524 301 KEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE--F--P--EMRFRYTSPHPKDFPDELLYIMRDRPNVCK-YIH 373 (524)
Q Consensus 301 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~--~--~--~~~ir~~s~~p~~~~~elL~~l~~~~~G~~-~i~ 373 (524)
|.++. +...+.++++.+.+. . + ..++.+++. .+.+ .++.+++. +.. .+.
T Consensus 186 -----GEPLl-------------N~d~V~~~i~~l~~~~~~g~gis~r~ITvST~---Gl~~-~i~~la~~--~l~~~La 241 (373)
T PRK14459 186 -----GEPLA-------------NYKRVVAAVRRITAPAPEGLGISARNVTVSTV---GLVP-AIRKLADE--GLPVTLA 241 (373)
T ss_pred -----Ccchh-------------hHHHHHHHHHHHhCcccccCCccCCEEEEECc---Cchh-HHHHHHHh--cCCeEEE
Confidence 33220 112355666666541 1 1 125555443 1233 45555555 554 699
Q ss_pred cCcCCcCHHHHhhhC---CCCCHHHHHHHHHHHH-HhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC--CCeEEEEe
Q 041524 374 LPAQTGNSAVLERMR---RGYTREAYLDLVQKIR-QIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG--YDMAYMFA 447 (524)
Q Consensus 374 igiESgs~~vL~~m~---R~~t~e~~~~~v~~ir-~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~--~d~~~i~~ 447 (524)
+.+-|.+++..+.+- |.++.++++++++... +..-.+.+..-+|-|+ .+++|+.++..++++.++ .-++++-+
T Consensus 242 vSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 242 VSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 999999999988753 5699999999977665 4422234455566676 799999999999999884 45789999
Q ss_pred eecCCCChhc
Q 041524 448 YSMRERTHAH 457 (524)
Q Consensus 448 ~sp~pGT~~~ 457 (524)
|.|.+|.+..
T Consensus 321 yNp~~~~~y~ 330 (373)
T PRK14459 321 LNPTPGSKWT 330 (373)
T ss_pred cCCCCCCCCc
Confidence 9999887543
No 117
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.05 E-value=3.7e-08 Score=102.16 Aligned_cols=184 Identities=16% Similarity=0.225 Sum_probs=125.3
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC-C-----CcEEEEEeccCCCCCCccCCccccCC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE-G-----VKEVTLLGQNVNSYNDTSGMEKEVEP 305 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G-----~kei~l~d~n~~~y~~~~~~~~~~~~ 305 (524)
...+..|+++-||+.+|.||..+. .|..|..++++|++++...... | +++|+|.| .
T Consensus 91 ~~~t~cvSsq~GC~l~C~fC~tg~-~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G-----m------------ 152 (343)
T PRK14468 91 DRKTICVSTMVGCPAGCAFCATGA-MGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG-----M------------ 152 (343)
T ss_pred CCCEEEEEecCCCCCcCCCCCCCC-CCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec-----c------------
Confidence 456789999999999999998754 3556889999999999876543 2 45777776 1
Q ss_pred CCccccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCCCCcc-eeecCcCCcC
Q 041524 306 GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRPNVCK-YIHLPAQTGN 380 (524)
Q Consensus 306 g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~~G~~-~i~igiESgs 380 (524)
|.++. +...+.+.++.+....+ ..++.+++.- +. ..++.+.+. +.. .+.+.+-+.+
T Consensus 153 GEPll-------------n~~~v~~~i~~l~~~~g~~l~~r~itvST~G---~~-~~i~~L~~~--~l~~~LaiSL~a~d 213 (343)
T PRK14468 153 GEPLL-------------NYENVLKAARIMLHPQALAMSPRRVTLSTVG---IP-KGIRRLAEE--DLGVRLALSLHAPD 213 (343)
T ss_pred Ccccc-------------CHHHHHHHHHHhcccccccccCceEEEECCC---Ch-HHHHHHHHh--CcCcEEEEEcCCCC
Confidence 33320 01223344443322111 1245555432 22 455566665 554 5999999999
Q ss_pred HHHHhhhC---CCCCHHHHHHHHHHHHHhC-CCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCC
Q 041524 381 SAVLERMR---RGYTREAYLDLVQKIRQII-PDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERT 454 (524)
Q Consensus 381 ~~vL~~m~---R~~t~e~~~~~v~~ir~~~-pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT 454 (524)
++..+++. ++++.+++++.++...+.. ..+.+..-+|-|+ .+++|++.+..+++..+. ..+.+-+|.|.++.
T Consensus 214 ~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~ 289 (343)
T PRK14468 214 EETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLRGLV-SHVNLIPFNPWEGS 289 (343)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCC
Confidence 99999874 6789999999997555542 2345556666666 799999999999999985 46888888887653
No 118
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.02 E-value=1.1e-08 Score=96.72 Aligned_cols=181 Identities=15% Similarity=0.151 Sum_probs=141.4
Q ss_pred EcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccch
Q 041524 240 VMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMC 319 (524)
Q Consensus 240 isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~ 319 (524)
|++-|..+|..|.-...++- ..-+-++++.+...+.+.|+..+.+.|.... +|+-+
T Consensus 17 TG~yC~lnC~HCg~~~L~~M-i~vt~~~l~k~~~el~kkGy~g~llSGGm~s---------------------rg~VP-- 72 (275)
T COG1856 17 TGAYCSLNCPHCGRHYLEHM-IKVTTKSLLKRCMELEKKGYEGCLLSGGMDS---------------------RGKVP-- 72 (275)
T ss_pred eccceEecChHHHHHHHHHh-cccchHHHHHHHHHHHhcCceeEEEeCCcCC---------------------CCCcc--
Confidence 47999999999987655543 2334488999999999999999888763321 12111
Q ss_pred hcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh-CCCCCHHHHHH
Q 041524 320 KVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM-RRGYTREAYLD 398 (524)
Q Consensus 320 ~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m-~R~~t~e~~~~ 398 (524)
-.+|.+.|+++++..+ +.+. .|....+++.++.++++ +..-+++-+=+ ++++++++ +-..++++|.+
T Consensus 73 -----l~kf~d~lK~lke~~~---l~in-aHvGfvdE~~~eklk~~--~vdvvsLDfvg-Dn~vIk~vy~l~ksv~dyl~ 140 (275)
T COG1856 73 -----LWKFKDELKALKERTG---LLIN-AHVGFVDESDLEKLKEE--LVDVVSLDFVG-DNDVIKRVYKLPKSVEDYLR 140 (275)
T ss_pred -----HHHHHHHHHHHHHhhC---eEEE-EEeeeccHHHHHHHHHh--cCcEEEEeecC-ChHHHHHHHcCCccHHHHHH
Confidence 1357778888877533 2222 56677889999999998 88888887764 66666665 44679999999
Q ss_pred HHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 399 LVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 399 ~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
.++.+++. |+.+.-++++|+-+-..+--.+.++.+.+..+|.+-+..+.|.|||.+..
T Consensus 141 ~l~~L~e~--~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~ 198 (275)
T COG1856 141 SLLLLKEN--GIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGN 198 (275)
T ss_pred HHHHHHHc--CceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccC
Confidence 99999999 99999999999988777666788999999999999999999999999875
No 119
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.02 E-value=7.1e-08 Score=100.35 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=127.2
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHH---CCCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWK---EGVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~---~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
...+..|+++-||+.+|.||..+. .|-.|..++++|++++..+.. .++..|+|.|. |.|
T Consensus 99 ~~~t~cissq~GC~l~C~fC~tg~-~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~Gm-----------------GEP 160 (343)
T PRK14469 99 DRITACISTQVGCPVKCIFCATGQ-SGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGM-----------------GEP 160 (343)
T ss_pred CCeEEEEEecCCCCCcCcCCCCCC-CCccccCCHHHHHHHHHHHHHhccCCcCeEEEEcc-----------------Chh
Confidence 456788999999999999998654 344577889999999976532 36788888872 333
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhC----CceEEEEecCCCCCCCHHHHHHHHcCCCCcc-eeecCcCCcCHHH
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEF----PEMRFRYTSPHPKDFPDELLYIMRDRPNVCK-YIHLPAQTGNSAV 383 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~----~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~-~i~igiESgs~~v 383 (524)
+. +...+.++++.+.... +...+.+++.- + .+.++.|.+. |.. .+.+.+.+.+++.
T Consensus 161 Ll-------------n~d~v~~~i~~l~~~~~~~~g~~~itisTnG---~-~~~i~~L~~~--~l~~~LaiSL~a~~~e~ 221 (343)
T PRK14469 161 LL-------------NYENVIKSIKILNHKKMKNIGIRRITISTVG---I-PEKIIQLAEE--GLDVKLALSLHAPTNFK 221 (343)
T ss_pred hh-------------hHHHHHHHHHHHhchhcccCCCCeEEEECCC---C-hHHHHHHHhh--CCCcEEEEEeCCCCHHH
Confidence 20 0123555566554321 22256565432 2 4566667676 777 6999999999999
Q ss_pred Hhhh---CCCCCHHHHHHHHHHHHHh-CCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCC
Q 041524 384 LERM---RRGYTREAYLDLVQKIRQI-IPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRER 453 (524)
Q Consensus 384 L~~m---~R~~t~e~~~~~v~~ir~~-~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pG 453 (524)
.+.+ +|+++.+++++.++...+. ...+.+..-+|-|+ .++++++++..+++..++. .+.+-+|.|.++
T Consensus 222 r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~-NDs~ed~~~La~llk~~~~-~VnLIpynp~~~ 293 (343)
T PRK14469 222 RDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGF-NDEIEDAKKLAELLKGLKV-FVNLIPVNPTVP 293 (343)
T ss_pred HHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhccCc-EEEEEecCCCCc
Confidence 7764 6788999999998866554 22344544456564 6889999999999998864 578888888765
No 120
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.98 E-value=8.9e-08 Score=95.21 Aligned_cols=179 Identities=17% Similarity=0.208 Sum_probs=130.2
Q ss_pred EEEEEcccCCccCcccccCC---CCCc--cccCChHHHHHHHHHHHHC-C-CcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 236 AFVSVMRGCNNMCSFCIVPF---TRGR--ERSRPVESIVKEVDELWKE-G-VKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~---~~G~--~Rsr~~e~Iv~Ei~~l~~~-G-~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
.-|.-+-||+.+|-||++.. .+-| ....++|.+++.++..++. | --|..+-|| |.+
T Consensus 109 iqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGq-----------------GEP 171 (414)
T COG2100 109 IQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQ-----------------GEP 171 (414)
T ss_pred EEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCC-----------------CCC
Confidence 34555899999999999832 1111 2335789999999988764 2 224444333 222
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh-
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM- 387 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m- 387 (524)
+- -..+.+|+++++++.+...+... .+...+++++++.|.++ |..++.+++.|.+++.-+.|
T Consensus 172 ~l--------------YP~l~~lVqalk~~~~v~vVSmQ-Tng~~L~~~lv~eLeeA--GLdRiNlSv~aLDpk~Ak~L~ 234 (414)
T COG2100 172 LL--------------YPHLVDLVQALKEHKGVEVVSMQ-TNGVLLSKKLVDELEEA--GLDRINLSVDALDPKLAKMLA 234 (414)
T ss_pred cc--------------chhHHHHHHHHhcCCCceEEEEe-eCceeccHHHHHHHHHh--CCceEEeecccCCHHHHHHhc
Confidence 10 13588999999988655555555 46667899999999999 99999999999999999876
Q ss_pred C-CCCCHHHHHHHHHHHHHhCCCcEEE-EeEEEcCCCCCHHHHHHHHHHHHHcCCC----eEEEEeeecCC
Q 041524 388 R-RGYTREAYLDLVQKIRQIIPDVGLS-SDFICGFCGETEEEHADTLTLMKAVGYD----MAYMFAYSMRE 452 (524)
Q Consensus 388 ~-R~~t~e~~~~~v~~ir~~~pgi~i~-~~fI~G~PgET~ed~~~tl~~l~~l~~d----~~~i~~~sp~p 452 (524)
+ |-|+.+.+++.++.+.+. +|.+- +=++ +||=+++++...++|+.+++.- .+.+..|.|+.
T Consensus 235 G~~dYdv~kvle~aE~i~~a--~idvlIaPv~--lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk 301 (414)
T COG2100 235 GRKDYDVKKVLEVAEYIANA--GIDVLIAPVW--LPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYK 301 (414)
T ss_pred CccccCHHHHHHHHHHHHhC--CCCEEEeeee--cCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeec
Confidence 3 479999999999999998 76532 2222 4788999999999999998532 24555666653
No 121
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.97 E-value=4.7e-08 Score=100.66 Aligned_cols=176 Identities=15% Similarity=0.197 Sum_probs=120.8
Q ss_pred EEEEEEcccCCccCcccccCCCCCcccc-CChHHHHHHHHHHHHC-CCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGRERS-RPVESIVKEVDELWKE-GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~~Rs-r~~e~Iv~Ei~~l~~~-G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
++.+.++.||+..|.||...... ..+. .+.+++.+-+..+.+. |+++|.|+|.+.....
T Consensus 97 r~l~~~t~~Cn~~Cr~C~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~------------------ 157 (321)
T TIGR03821 97 RVLLIVTGGCAINCRYCFRRHFP-YQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAK------------------ 157 (321)
T ss_pred EEEEEeCCCcCCcCcCCCCCCcC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCC------------------
Confidence 35667999999999999864321 1121 2233333334445444 8999999985543320
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEec----CCCCCCCHHHHHHHHcCCCCccee-ecCcCCcCHHHHhhh
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTS----PHPKDFPDELLYIMRDRPNVCKYI-HLPAQTGNSAVLERM 387 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s----~~p~~~~~elL~~l~~~~~G~~~i-~igiESgs~~vL~~m 387 (524)
...+.++++.+..+.....+++.+ ..|..+++++++.++++ |...+ .+.+++.. ++-
T Consensus 158 ------------d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~--~~~~~~~~h~dh~~-Ei~--- 219 (321)
T TIGR03821 158 ------------DHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANS--RLQTVLVVHINHAN-EID--- 219 (321)
T ss_pred ------------chHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhc--CCcEEEEeeCCChH-hCc---
Confidence 134788888877754434566654 34567899999999998 76665 34666542 331
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEe--EEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 388 RRGYTREAYLDLVQKIRQIIPDVGLSSD--FICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 388 ~R~~t~e~~~~~v~~ir~~~pgi~i~~~--fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
++..++++.++++ |+.+... ++-|. .++.+++.+..+++.++++...++|.+.|..|+..
T Consensus 220 ------d~~~~ai~~L~~~--Gi~v~~qtvllkgi-NDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~ 281 (321)
T TIGR03821 220 ------AEVADALAKLRNA--GITLLNQSVLLRGV-NDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAH 281 (321)
T ss_pred ------HHHHHHHHHHHHc--CCEEEecceeeCCC-CCCHHHHHHHHHHHHHcCCeeCcccccCCCCCccc
Confidence 5588899999999 8876543 33344 58899999999999999998888888888888653
No 122
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.96 E-value=8.5e-08 Score=99.53 Aligned_cols=186 Identities=14% Similarity=0.182 Sum_probs=130.4
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC-C-----CcEEEEEeccCCCCCCccCCccccCC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE-G-----VKEVTLLGQNVNSYNDTSGMEKEVEP 305 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G-----~kei~l~d~n~~~y~~~~~~~~~~~~ 305 (524)
.+.+..|+++.|||.+|.||..+. .|..|...+++|+++|..+... . ...|+|.| .
T Consensus 108 ~r~t~CvSsQvGC~~~C~FCatg~-~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmG-----m------------ 169 (356)
T PRK14462 108 AKYTVCVSSQVGCKVGCAFCLTAK-GGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMG-----M------------ 169 (356)
T ss_pred CCceEeeeccccCCCCCccCCCCC-CCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeC-----C------------
Confidence 356789999999999999998763 4567899999999999866542 1 33555553 1
Q ss_pred CCccccccCcccchhcccchhhHHHHHHHHHhhCCc----eEEEEecCCCCCCCHHHHHHHHcCCCCc-ceeecCcCCcC
Q 041524 306 GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE----MRFRYTSPHPKDFPDELLYIMRDRPNVC-KYIHLPAQTGN 380 (524)
Q Consensus 306 g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~----~~ir~~s~~p~~~~~elL~~l~~~~~G~-~~i~igiESgs 380 (524)
|.++ -+...+.++++.+.+..+. .++.+++.- +.+ .++.+.+. .. ..+.+.+-+.+
T Consensus 170 GEPL-------------~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG---~~~-~i~~L~~~--dl~v~LaiSLha~d 230 (356)
T PRK14462 170 GEPL-------------DNLDNVSKAIKIFSENDGLAISPRRQTISTSG---LAS-KIKKLGEM--NLGVQLAISLHAVD 230 (356)
T ss_pred cccc-------------cCHHHHHHHHHHhcCccCCCcCCCceEEECCC---ChH-HHHHHHhc--CCCeEEEEECCCCC
Confidence 3332 0123455666666653221 245555432 233 44556654 44 55778899999
Q ss_pred HHHHhhh---CCCCCHHHHHHHHHHH-HHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 381 SAVLERM---RRGYTREAYLDLVQKI-RQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 381 ~~vL~~m---~R~~t~e~~~~~v~~i-r~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
++..+.+ ++.+..++++++++.. .+....+.+..-+|-|+ .+++|++++..++++.++ ..+++-+|.|.++.+.
T Consensus 231 ~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~ 308 (356)
T PRK14462 231 DELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKF 308 (356)
T ss_pred HHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCC
Confidence 9998875 5678889999988744 45533456667778787 899999999999999986 4799999999988754
No 123
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.96 E-value=5.7e-08 Score=100.72 Aligned_cols=189 Identities=14% Similarity=0.193 Sum_probs=126.4
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHH----CCCcEEEEEeccCCCCCCccCCccccCCCC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWK----EGVKEVTLLGQNVNSYNDTSGMEKEVEPGA 307 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~----~G~kei~l~d~n~~~y~~~~~~~~~~~~g~ 307 (524)
.+.+.+|+++-|||.+|.||..+. .|..|..++++|++++..... .++..|+|.| . |.
T Consensus 97 ~~~t~cvSsq~GC~l~C~FC~t~~-~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmG-----m------------GE 158 (348)
T PRK14467 97 DHLTLCVSSQVGCAVGCKFCATAK-DGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMG-----M------------GE 158 (348)
T ss_pred CCcEEEEEcCCCCCCcCcCCCCCC-CCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEc-----c------------Ch
Confidence 467899999999999999998863 465689999999999987654 2567888877 1 33
Q ss_pred ccccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCC-CCcceeecCcCCcCHH
Q 041524 308 NWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRP-NVCKYIHLPAQTGNSA 382 (524)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~-~G~~~i~igiESgs~~ 382 (524)
++. +...+.++++.+.+..+ ..++.+++.- +.+.+-++..+.- ..+ .+.+.+-+.+++
T Consensus 159 PL~-------------N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G---~~~~i~~l~~~~~l~~v-~LalSLha~~~e 221 (348)
T PRK14467 159 PLA-------------NYENVRKAVQIMTSPWGLDLSKRRITISTSG---IIHQIKRMAEDPVMPEV-NLAVSLNASSQK 221 (348)
T ss_pred hhc-------------CHHHHHHHHHHHcChhccCcCCCcEEEECCC---ChhHHHHHHhhccccCe-eEEEECCCCCHH
Confidence 220 11235556666644222 1256665431 2222222222210 123 466999999999
Q ss_pred HHhhhCC---CCCHHHHHHHHHHHH-HhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEeeecCCCChh
Q 041524 383 VLERMRR---GYTREAYLDLVQKIR-QIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG-YDMAYMFAYSMRERTHA 456 (524)
Q Consensus 383 vL~~m~R---~~t~e~~~~~v~~ir-~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~-~d~~~i~~~sp~pGT~~ 456 (524)
..+.+.. .++.+++.++++... +....+.+..=+|-|+ .+++|++++..+++..++ ..++.+-+|.|+|+...
T Consensus 222 ~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGv-NDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~ 299 (348)
T PRK14467 222 LRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGV-NDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY 299 (348)
T ss_pred HHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCc-cCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC
Confidence 9988644 567888888876554 3423445555666565 688999999999999874 56788999999888754
No 124
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.96 E-value=8.7e-08 Score=100.95 Aligned_cols=182 Identities=14% Similarity=0.193 Sum_probs=135.3
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCc-cccCChHHHHHHHHHHHHC-CCcEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGR-ERSRPVESIVKEVDELWKE-GVKEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~-~Rsr~~e~Iv~Ei~~l~~~-G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
...++.+.++.+|+..|.||......|. ....+.+++.+-++++.+. ++++|.|.|.+.....
T Consensus 106 Yp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~--------------- 170 (417)
T TIGR03820 106 YPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLS--------------- 170 (417)
T ss_pred cCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCC---------------
Confidence 4456788899999999999987543332 4556788888888888875 9999999986654331
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecC----CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP----HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~----~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~ 385 (524)
...+..+++.+.++.....+|+.+- -|..+++++++.|+++ +..++.+-+.+ ++-
T Consensus 171 ---------------d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~--~~~~v~~h~nh--p~E-- 229 (417)
T TIGR03820 171 ---------------DDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKH--HPVWLNTHFNH--PRE-- 229 (417)
T ss_pred ---------------hHHHHHHHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHhc--CCeEEEEeCCC--hHh--
Confidence 1246667788877543335777652 3667899999999998 65555554444 332
Q ss_pred hhCCCCCHHHHHHHHHHHHHhCCCcEEE--EeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 386 RMRRGYTREAYLDLVQKIRQIIPDVGLS--SDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 386 ~m~R~~t~e~~~~~v~~ir~~~pgi~i~--~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
..++..++++.++++ ||.+. +-++-| =.++.+.+.+...-+.++++.--++|..-+.+|+.-++
T Consensus 230 ------it~~a~~Al~~L~~a--GI~l~nQsVLLkG-VND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFr 295 (417)
T TIGR03820 230 ------ITASSKKALAKLADA--GIPLGNQSVLLAG-VNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFR 295 (417)
T ss_pred ------ChHHHHHHHHHHHHc--CCEEEeeceEECC-cCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCccccc
Confidence 258999999999999 88754 566667 48899999999999999887767788888889987764
No 125
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.96 E-value=4.9e-08 Score=97.28 Aligned_cols=192 Identities=16% Similarity=0.211 Sum_probs=138.5
Q ss_pred EEEEEcccCCc----cCcccccCCCCCccccCChHHHHHHHHHHHHC-C--CcE--EE-EEeccCCCCCCccCCccccCC
Q 041524 236 AFVSVMRGCNN----MCSFCIVPFTRGRERSRPVESIVKEVDELWKE-G--VKE--VT-LLGQNVNSYNDTSGMEKEVEP 305 (524)
Q Consensus 236 a~v~isRGC~~----~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G--~ke--i~-l~d~n~~~y~~~~~~~~~~~~ 305 (524)
..|--++||-+ .|..|..+... .....+.++++..+...... . ..+ |. |+...|....
T Consensus 49 ~vILrT~GC~w~~~~gC~MCgY~~d~-~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~----------- 116 (358)
T COG1244 49 TVILRTRGCRWYREGGCYMCGYPADS-AGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPE----------- 116 (358)
T ss_pred EEEEecCCcceeccCCcceecccccc-CCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChh-----------
Confidence 33444899983 39999987642 25678899999999887653 1 222 22 3343332210
Q ss_pred CCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCC-cceeecCcCCcCHHHH
Q 041524 306 GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNV-CKYIHLPAQTGNSAVL 384 (524)
Q Consensus 306 g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G-~~~i~igiESgs~~vL 384 (524)
. . .......+++.+++.+...++-+. .+|..+++|.|+.+.+.-.| -..|.||+||.++++.
T Consensus 117 --E--V------------P~e~R~~Il~~is~~~~v~~vvvE-SRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ir 179 (358)
T COG1244 117 --E--V------------PREARRYILERISENDNVKEVVVE-SRPEFIREERLEEITEILEGKIVEVAIGLETANDKIR 179 (358)
T ss_pred --h--C------------CHHHHHHHHHHHhhccceeEEEee-cCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHH
Confidence 0 0 013355678888887655677666 68999999999999976223 3459999999999998
Q ss_pred -hhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHH-HHHHHHHHHH--cCCCeEEEEeeecCCCChhcc
Q 041524 385 -ERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEE-HADTLTLMKA--VGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 385 -~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed-~~~tl~~l~~--l~~d~~~i~~~sp~pGT~~~~ 458 (524)
..||||.|.+++.++++.+|++ |+.+.+++++-.|-=|+.+ +++.++-+.. -..+.+++.+-+...||-...
T Consensus 180 e~sINKGftF~df~~A~~~ir~~--g~~vktYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~ 255 (358)
T COG1244 180 EDSINKGFTFEDFVRAAEIIRNY--GAKVKTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEK 255 (358)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHc--CCceeEEEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHH
Confidence 5799999999999999999999 9999999999988766533 3334444443 357889999999999997654
No 126
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=98.95 E-value=1.1e-07 Score=97.85 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=124.4
Q ss_pred eEEEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
....++++.+|+.+|.||........ .+..+++++++.++. .|+..|.|.|.....+
T Consensus 28 l~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e---~g~~~V~i~GGEPLL~------------------ 86 (318)
T TIGR03470 28 LVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDE---CGAPVVSIPGGEPLLH------------------ 86 (318)
T ss_pred CEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHH---cCCCEEEEeCcccccc------------------
Confidence 46778999999999999986432211 234678888766553 4888888887444332
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh-CCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM-RRG 390 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m-~R~ 390 (524)
..+.++++.+.+.. ..+.+. .+...++ +.+..++.+ +...+.+.+.+.. +.-+.+ ++.
T Consensus 87 --------------pdl~eiv~~~~~~g--~~v~l~-TNG~ll~-~~~~~l~~~--~~~~i~VSLDG~~-e~hd~~~~~~ 145 (318)
T TIGR03470 87 --------------PEIDEIVRGLVARK--KFVYLC-TNALLLE-KKLDKFEPS--PYLTFSVHLDGLR-EHHDASVCRE 145 (318)
T ss_pred --------------ccHHHHHHHHHHcC--CeEEEe-cCceehH-HHHHHHHhC--CCcEEEEEEecCc-hhhchhhcCC
Confidence 24778888776543 344444 3444454 446667776 7778899988754 555554 455
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCC
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERT 454 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT 454 (524)
.+.+.+++.++.+++. |+.+...+.+ +++++.+++.+.++++.+++++.+.+.+..++..+
T Consensus 146 g~f~~~l~~I~~l~~~--G~~v~v~~tv-~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a 206 (318)
T TIGR03470 146 GVFDRAVEAIREAKAR--GFRVTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKA 206 (318)
T ss_pred CcHHHHHHHHHHHHHC--CCcEEEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCcccccc
Confidence 6899999999999998 7766655433 36789999999999999999998888766655433
No 127
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=98.94 E-value=1.7e-07 Score=97.17 Aligned_cols=183 Identities=13% Similarity=0.217 Sum_probs=126.3
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCC--CcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEG--VKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G--~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
.++.|+++-||+.+|.||..+. .|..|..++++|++++..+...| ++.|+|.|. |.++.
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~-~g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGm-----------------GEPLl- 160 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGS-IGLKRNLTADEITDQLLYFYLNGHRLDSISFMGM-----------------GEALA- 160 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCC-CCCcccCCHHHHHHHHHHHHhcCCCcceEEEeec-----------------CCccC-
Confidence 6789999999999999999875 36678899999999999876554 788998872 33220
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhC----CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEF----PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~----~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m 387 (524)
+ ..+.+.++.+.+.. +..++.+++.- +.+. ++.+.+.- .-..+.+.+-+.+++..+.+
T Consensus 161 ------------n-~~v~~~i~~l~~~~~~~~~~r~itVsT~G---~~~~-i~~l~~~~-~~v~LalSLha~dd~~r~~l 222 (347)
T PRK14453 161 ------------N-PELFDALKILTDPNLFGLSQRRITISTIG---IIPG-IQRLTQEF-PQVNLTFSLHSPFESQRSEL 222 (347)
T ss_pred ------------C-HHHHHHHHHHhcccccCCCCCcEEEECCC---Cchh-HHHHHhhc-cCcCEEEEecCCCHHHHHHh
Confidence 0 23555555555421 22346665432 1221 23333320 12346668899998887764
Q ss_pred ---CCCCCHHHHHHHHHHHHH-hCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC----CCeEEEEeeecCCCC
Q 041524 388 ---RRGYTREAYLDLVQKIRQ-IIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG----YDMAYMFAYSMRERT 454 (524)
Q Consensus 388 ---~R~~t~e~~~~~v~~ir~-~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~----~d~~~i~~~sp~pGT 454 (524)
++.+..++++++++.... ....+.+..=+|-|+ .+++|++++.++|++.++ ...+.+-+|.|.++.
T Consensus 223 ~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~ 296 (347)
T PRK14453 223 MPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT 296 (347)
T ss_pred cCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC
Confidence 456778888777665544 323466778888887 799999999999999874 567899999998774
No 128
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.94 E-value=1.4e-07 Score=98.58 Aligned_cols=186 Identities=16% Similarity=0.205 Sum_probs=128.2
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC----------CCcEEEEEeccCCCCCCccCCcc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE----------GVKEVTLLGQNVNSYNDTSGMEK 301 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~----------G~kei~l~d~n~~~y~~~~~~~~ 301 (524)
.+.+..|+++-||+.+|.||..+. .|-.|..++++|+++|...... ++++|+|+|-
T Consensus 101 ~~~t~CvSsQvGC~~~C~FC~t~~-~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGm------------- 166 (372)
T PRK11194 101 DRATLCVSSQVGCALECKFCSTAQ-QGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGM------------- 166 (372)
T ss_pred CCeeEEEecCCCCCCcCCCCCCCC-CCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecC-------------
Confidence 467789999999999999999874 3556889999999998765431 2677777761
Q ss_pred ccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 302 EVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 302 ~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
|.++. +...+.+.++.+.+..+ ..++.+++.- +.+.+.++ .+. .--.+.+.+-
T Consensus 167 ----GEPL~-------------N~d~v~~al~~l~~~~g~~i~~r~itVsTsG---~~~~i~~l-~~~--~d~~LaiSLh 223 (372)
T PRK11194 167 ----GEPLL-------------NLNNVVPAMEIMLDDFGFGLSKRRVTLSTSG---VVPALDKL-GDM--IDVALAISLH 223 (372)
T ss_pred ----Ccccc-------------CHHHHHHHHHHHhhhhccCcCCCeEEEECCC---CchHHHHH-Hhc--cCeEEEeecc
Confidence 33320 11224455555553322 1256665432 33444444 443 3345777889
Q ss_pred CcCHHHHhhhC---CCCCHHHHHHHHHHHHHhC----CCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeec
Q 041524 378 TGNSAVLERMR---RGYTREAYLDLVQKIRQII----PDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 378 Sgs~~vL~~m~---R~~t~e~~~~~v~~ir~~~----pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp 450 (524)
+.+++..+.+- +.+..+++++++....... ..+.+..=+|-|+ .+++|++++..+|+..++. .+.+-+|.|
T Consensus 224 a~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGv-NDs~e~a~~La~ll~~l~~-~VnLIPYN~ 301 (372)
T PRK11194 224 APNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNP 301 (372)
T ss_pred CCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCC-CCCHHHHHHHHHHHhcCCc-eEEEecCCC
Confidence 99999988753 4678888887766555432 2477888888887 7999999999999999864 799999999
Q ss_pred CCCChh
Q 041524 451 RERTHA 456 (524)
Q Consensus 451 ~pGT~~ 456 (524)
++|.+.
T Consensus 302 ~~~~~~ 307 (372)
T PRK11194 302 FPGAPY 307 (372)
T ss_pred CCCCCC
Confidence 987543
No 129
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.93 E-value=3.8e-08 Score=101.43 Aligned_cols=182 Identities=18% Similarity=0.265 Sum_probs=125.5
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC-CCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE-GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
.+.+|+++-||+..|.||.... .|-.|..++++|++++..+.+. .+++|+|.|. |.|+
T Consensus 96 ~t~CvSsQvGC~~~C~FC~tg~-~g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGm-----------------GEPl--- 154 (344)
T PRK14464 96 DGLCVSTQVGCAVGCVFCMTGR-SGLLRQLGSAEIVAQVVLARRRRAVKKVVFMGM-----------------GEPA--- 154 (344)
T ss_pred CcEEEEccCCcCCCCCcCcCCC-CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEecc-----------------Cccc---
Confidence 4789999999999999998743 3556888999999999988764 6899999872 3332
Q ss_pred cCcccchhcccchhhHHHHHHH---HHhh--CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh
Q 041524 313 EGFNSMCKVKKMGLRFADLLDR---LSLE--FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~---l~~~--~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m 387 (524)
..+.++++. +.+. .+...+.+++.. +. ..++.+.+. ..-..+.+.+.+.+++..+.+
T Consensus 155 -------------~N~d~vl~ai~~l~~~~~i~~r~itiST~G---~~-~~i~rL~~~-~v~~~LaiSLhA~~~e~R~~i 216 (344)
T PRK14464 155 -------------HNLDNVLEAIDLLGTEGGIGHKNLVFSTVG---DP-RVFERLPQQ-RVKPALALSLHTTRAELRARL 216 (344)
T ss_pred -------------CCHHHHHHHHHHhhchhcCCCceEEEeccc---Cc-hHHHHHHHh-cCChHHHHHhcCCChhHhhee
Confidence 123333333 3221 133345554332 22 234444442 123457789999999998875
Q ss_pred C---CCCCHHHHHHHHHHHHHhCCCcEE--EEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 388 R---RGYTREAYLDLVQKIRQIIPDVGL--SSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 388 ~---R~~t~e~~~~~v~~ir~~~pgi~i--~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
. |.++.+++.++++...+.. |..+ ..-+|-|. .+++|+.++..+++..+.. ++++-+|.|.+|+...
T Consensus 217 mP~~~~~~l~el~~a~~~~~~~~-grri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~-~vNLIPyN~v~g~~~~ 288 (344)
T PRK14464 217 LPRAPRIAPEELVELGEAYARAT-GYPIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYA-VMNLIPYNSVDGDAYR 288 (344)
T ss_pred CCccCCCCHHHHHHHHHHHHHHH-CCEEEEEEEEeCCC-CCCHHHHHHHHHHHhcccc-ccceecCCccCCCCcc
Confidence 4 5789999999888876653 5444 34444465 8999999999999987754 4888999999998654
No 130
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.92 E-value=1.4e-07 Score=97.62 Aligned_cols=185 Identities=15% Similarity=0.206 Sum_probs=129.5
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC-----------------CCcEEEEEeccCCCCC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE-----------------GVKEVTLLGQNVNSYN 294 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-----------------G~kei~l~d~n~~~y~ 294 (524)
.+.++.|+++-||+..|.||+... .|-.|..++.+|++++..+.+. .++.|+|.|-
T Consensus 105 ~r~TlCvSSQvGC~mgC~FCaTG~-~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGM------ 177 (371)
T PRK14461 105 DRATVCVSTQAGCGMGCVFCATGT-LGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGM------ 177 (371)
T ss_pred CCceEEEEccCCccCCCCcccCCC-CCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEcc------
Confidence 457799999999999999998743 4567999999999999876431 1567777762
Q ss_pred CccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh---CC----ceEEEEecCCCCCCCHHHHHHHHcCCC
Q 041524 295 DTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE---FP----EMRFRYTSPHPKDFPDELLYIMRDRPN 367 (524)
Q Consensus 295 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~---~~----~~~ir~~s~~p~~~~~elL~~l~~~~~ 367 (524)
|.++ ..+..+++.+... .+ .-+|.+++. .+.+.+.++..+.
T Consensus 178 -----------GEPL----------------~NydnV~~ai~il~d~~g~~is~R~ITVST~---Givp~I~~la~~~-- 225 (371)
T PRK14461 178 -----------GEPF----------------ANYDRWWQAVERLHDPQGFNLGARSMTVSTV---GLVKGIRRLANER-- 225 (371)
T ss_pred -----------CCch----------------hhHHHHHHHHHHhcCccccCcCCCceEEEee---cchhHHHHHHhcc--
Confidence 4442 2344444444332 11 124555543 2445444444432
Q ss_pred CcceeecCcCCcCHHHHhhh---CCCCCHHHHHHHHHHHHHhCCC--cEEEEeEEEcCCCCCHHHHHHHHHHHHHcC---
Q 041524 368 VCKYIHLPAQTGNSAVLERM---RRGYTREAYLDLVQKIRQIIPD--VGLSSDFICGFCGETEEEHADTLTLMKAVG--- 439 (524)
Q Consensus 368 G~~~i~igiESgs~~vL~~m---~R~~t~e~~~~~v~~ir~~~pg--i~i~~~fI~G~PgET~ed~~~tl~~l~~l~--- 439 (524)
.-..+.+++-+.+++..+.+ +|.|..++++++++...+. .+ |.+..-+|-|. .+++|+.++..++++.++
T Consensus 226 ~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~-t~rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~ 303 (371)
T PRK14461 226 LPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAK-TRRRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPG 303 (371)
T ss_pred cCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHh-hCCEEEEEEEEECCC-CCCHHHHHHHHHHHcCCcccc
Confidence 23468899999999998874 6899999999999877654 23 44445555565 899999999999999873
Q ss_pred --CCeEEEEeeecCCCChhc
Q 041524 440 --YDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 440 --~d~~~i~~~sp~pGT~~~ 457 (524)
.-++++-+|.|.||++..
T Consensus 304 ~l~~~VNLIp~Np~~~~~~~ 323 (371)
T PRK14461 304 PLLVHVNLIPWNPVPGTPLG 323 (371)
T ss_pred CCceEEEEecCCCCCCCCCC
Confidence 347899999999999754
No 131
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.90 E-value=2.4e-07 Score=95.68 Aligned_cols=181 Identities=12% Similarity=0.155 Sum_probs=125.0
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHH---CCCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWK---EGVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~---~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
...+..|+++-||+.+|+||.... .|-.|.....+|++++-.+.+ ..+.+|+|.| + |.|
T Consensus 103 ~~~t~CvSsQvGC~m~C~FC~tg~-~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----m------------GEP 164 (342)
T PRK14465 103 GRKTICISSQIGCTLNCKFCATAK-LEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----M------------GEP 164 (342)
T ss_pred CceEEEEEecCCCCCCCCCCcCCC-CCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----C------------Ccc
Confidence 346789999999999999998854 455688899999999987654 3577888887 3 443
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhC----CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHH
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEF----PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVL 384 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~----~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL 384 (524)
+. +-..+.+.++.+.... +..++++++.- +.+.+.++..+. .-..+.|.+.+.+++..
T Consensus 165 L~-------------N~d~V~~~~~~l~~~~~~~~~~r~itvST~G---~~~~i~~l~~~~--~~~~LaiSLhA~~~e~R 226 (342)
T PRK14465 165 MH-------------NYFNVIRAASILHDPDAFNLGAKRITISTSG---VVNGIRRFIENK--EPYNFAISLNHPDPNGR 226 (342)
T ss_pred hh-------------hHHHHHHHHHHHhChhhhcCCCCeEEEeCCC---chHHHHHHHhhc--cCceEEEEecCCChhhc
Confidence 20 0112333334333321 22366666432 235555555443 22478999999999999
Q ss_pred hhh---CCCCCHHHHHHHHHHHHHhC-CCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeec
Q 041524 385 ERM---RRGYTREAYLDLVQKIRQII-PDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 385 ~~m---~R~~t~e~~~~~v~~ir~~~-pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp 450 (524)
..+ ++.++.+++.+++....+.. ..+.+..-+|-|+ .+++|++++..+++..++ -.+.+-+|.|
T Consensus 227 ~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~ 294 (342)
T PRK14465 227 LQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGV-NMGRENANKLVKIARSLD-CKINVIPLNT 294 (342)
T ss_pred ceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCC
Confidence 886 68899999999999665432 2233445555565 589999999999999986 4588888888
No 132
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.85 E-value=3.2e-07 Score=95.11 Aligned_cols=186 Identities=12% Similarity=0.225 Sum_probs=124.2
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC---CCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE---GVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~---G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
.+.+++|+++-|||.+|.||..+. .|..|..++++|+++|...... .+..+++.| . |.+
T Consensus 99 ~~~t~cvSsqvGC~~~C~FC~tg~-~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mg-----g------------GEP 160 (342)
T PRK14454 99 HGNSICVSTQVGCRMGCKFCASTI-GGMVRNLTAGEMLDQILAAQNDIGERISNIVLMG-----S------------GEP 160 (342)
T ss_pred CCCEEEEEcCCCCCCcCCcCCCCC-CCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEEC-----C------------chh
Confidence 456899999999999999998753 4557889999999999877542 233444432 1 433
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhCC----ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHH
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP----EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVL 384 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL 384 (524)
+. +...+.++++.+.+..+ ..++.+++. .+.+.+.++.... ..+ .+.+.+-+.+++..
T Consensus 161 Ll-------------n~d~v~~~l~~l~~~~gi~~~~r~itvsTs---G~~p~i~~l~~~~-~~~-~laisLka~d~e~r 222 (342)
T PRK14454 161 LD-------------NYENVMKFLKIVNSPYGLNIGQRHITLSTC---GIVPKIYELADEN-LQI-TLAISLHAPNDELR 222 (342)
T ss_pred hc-------------CHHHHHHHHHHHhcccccCcCCCceEEECc---CChhHHHHHHhhc-ccc-eEEEecCCCCHHHH
Confidence 20 12335666666664211 114555542 2334444444332 123 37899999999998
Q ss_pred hhhC---CCCCHHHHHHHHHH-HHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 385 ERMR---RGYTREAYLDLVQK-IRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 385 ~~m~---R~~t~e~~~~~v~~-ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
+.+- +.+..+++.++++. +.+....+.+..=+|-|+ .+++|++++..++++.+. -.+++-+|.|.++..
T Consensus 223 ~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gv-NDs~eda~~La~llk~l~-~~VnLiPyn~~~~~~ 295 (342)
T PRK14454 223 KKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGV-NDSKEDAKELGKLLKGML-CHVNLIPVNEVKENG 295 (342)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEEecCCCCCCC
Confidence 8754 46778888777755 445423455667777777 799999999999999874 578889999887763
No 133
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.84 E-value=3e-07 Score=94.71 Aligned_cols=172 Identities=14% Similarity=0.175 Sum_probs=119.4
Q ss_pred cccCCccCcccccCCCCC------ccccCChHHHHHHHHHHHHC---CC-----------------cEEEEEeccCCCCC
Q 041524 241 MRGCNNMCSFCIVPFTRG------RERSRPVESIVKEVDELWKE---GV-----------------KEVTLLGQNVNSYN 294 (524)
Q Consensus 241 sRGC~~~CsFC~vp~~~G------~~Rsr~~e~Iv~Ei~~l~~~---G~-----------------kei~l~d~n~~~y~ 294 (524)
..||+++|.||..+.... ..+..++++|++++...... |+ +.+.|.+ .
T Consensus 65 ~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl-----~- 138 (322)
T PRK13762 65 VAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISL-----S- 138 (322)
T ss_pred hHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeC-----C-
Confidence 578999999999876543 14567899999999776321 21 1233221 1
Q ss_pred CccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeec
Q 041524 295 DTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHL 374 (524)
Q Consensus 295 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~i 374 (524)
|.++ + ...+.++++.+.+.. +.+.+.+ +. .+ ++.++.| .. +...+.+
T Consensus 139 -----------GEPl--------L------~p~l~eli~~~k~~G--i~~~L~T-NG-~~-~e~l~~L-~~--~~d~i~V 185 (322)
T PRK13762 139 -----------GEPT--------L------YPYLPELIEEFHKRG--FTTFLVT-NG-TR-PDVLEKL-EE--EPTQLYV 185 (322)
T ss_pred -----------cccc--------c------hhhHHHHHHHHHHcC--CCEEEEC-CC-CC-HHHHHHH-Hh--cCCEEEE
Confidence 3332 0 125888888887652 3444443 22 22 5788888 44 7899999
Q ss_pred CcCCcCHHHHhhhCCC---CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 041524 375 PAQTGNSAVLERMRRG---YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR 451 (524)
Q Consensus 375 giESgs~~vL~~m~R~---~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~ 451 (524)
.+.+.+++..+.++++ .+.+.+++.++.+++..-.+.+...++ ||.+..+..+.++++.+++++.+.+.+|.+.
T Consensus 186 SLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~~~~~~~ir~tlv---~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~ 262 (322)
T PRK13762 186 SLDAPDEETYKKINRPVIPDAWERILETLELLPSKKTRTVIRITLV---KGYNMHDPEGFAKLIERANPDFVEVKAYMHV 262 (322)
T ss_pred EccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHhCCCCEEEEEEEE---CCcCccHHHHHHHHHHHcCCCEEEEECCeEC
Confidence 9999999999999874 589999999999999822234555555 4555555568889999999999999888876
Q ss_pred CCC
Q 041524 452 ERT 454 (524)
Q Consensus 452 pGT 454 (524)
...
T Consensus 263 G~~ 265 (322)
T PRK13762 263 GYS 265 (322)
T ss_pred CCc
Confidence 543
No 134
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.81 E-value=9.5e-08 Score=95.22 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=106.9
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC----CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHH
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR----GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADT 431 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R----~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~t 431 (524)
.+-+..+++. |...+.++.+..+.++++.++| .++.|.+.+.++++..+++.-.+...+|+|+ |||++++-++
T Consensus 131 ~~~l~e~~kl--g~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ihliVgl-GesD~~~ve~ 207 (339)
T COG2516 131 KEELEEYRKL--GADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHLIVGL-GESDKDIVET 207 (339)
T ss_pred hHHHHHHHhc--chhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcceeEEecc-CCchHHHHHH
Confidence 6778888888 9999999999999999999865 3789999999999999988668999999995 9999999999
Q ss_pred HHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEEEec
Q 041524 432 LTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVLVEG 502 (524)
Q Consensus 432 l~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~~~~~~~~~~~~~~vG~~~~vLve~ 502 (524)
+..+...+.. +++|+|.|..||.+..+. .+|-+ ..++.+... .+-+..+..+..+.|-...-||++
T Consensus 208 ~~~v~~~g~~-v~Lfaf~P~~gt~me~r~--~~pve-~Yrk~q~a~-yli~~G~v~~~~~~fde~g~lI~~ 273 (339)
T COG2516 208 IKRVRKRGGI-VSLFAFTPLKGTQMENRK--PPPVE-RYRKIQVAR-YLIGNGEVDLEDFEFDEFGNLIDS 273 (339)
T ss_pred HHHHHhcCce-EEEEEecccccccccCCC--CCcHH-HHHHHHHHH-HHHhcCccchhhcccccccceecc
Confidence 9999988754 899999999999887532 22222 223444444 333333444555666666666663
No 135
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=98.79 E-value=1.5e-07 Score=91.66 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=130.7
Q ss_pred EEEEE-EcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 235 TAFVS-VMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 235 ~a~v~-isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
.|.|. .+.-|...|.||++...|.+ .-...|++..+-|... |+..|+|+.-+ |++.
T Consensus 111 TATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasW---gl~YiVlTSVD----RDDl-------------- 169 (360)
T KOG2672|consen 111 TATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASW---GLDYIVLTSVD----RDDL-------------- 169 (360)
T ss_pred eEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHc---CCCeEEEEecc----cccC--------------
Confidence 34443 47899999999999876653 4445567776655544 99999988643 2221
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCC-CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKD-FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG 390 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~-~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~ 390 (524)
.+| +..++++-++.|.+..|.+-+ ..+.|+. =+-+.++.++.+ |...+.=.+|+.-.-.---=.|.
T Consensus 170 pDg---------Ga~HiAkTVq~iK~k~p~ilv--E~L~pDF~Gd~~~Ve~va~S--GLDV~AHNvETVe~Ltp~VRD~R 236 (360)
T KOG2672|consen 170 PDG---------GANHIAKTVQKIKEKAPEILV--ECLTPDFRGDLKAVEKVAKS--GLDVYAHNVETVEELTPFVRDPR 236 (360)
T ss_pred cCc---------chHHHHHHHHHHHhhCcccch--hhcCccccCchHHHHHHHhc--CccceecchhhHHhcchhhcCcc
Confidence 111 235799999999888776544 3344432 145688999998 99888778876432211112346
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeec
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp 450 (524)
.+..+-+..++.+++..|++...+.+|.|+ |||+|++.+|++.++..+.|.+.+-.|.+
T Consensus 237 A~yrQSL~VLk~aK~~~P~litktsiMlgl-getdeei~~tl~dLr~~~vdv~t~gqym~ 295 (360)
T KOG2672|consen 237 ANYRQSLSVLKHAKEVKPGLITKTSIMLGL-GETDEEIKQTLKDLRAADVDVVTFGQYMQ 295 (360)
T ss_pred cchHHhHHHHHHHHhhCCCceehhhhhhcc-CCCHHHHHHHHHHHHHcCCcEEecccccC
Confidence 788999999999999999987788999997 99999999999999999999877666643
No 136
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.72 E-value=1.5e-06 Score=87.36 Aligned_cols=175 Identities=18% Similarity=0.234 Sum_probs=127.9
Q ss_pred cCCccCcccccCCCC----CccccCChHHHHHHHHHHHHC------CCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 243 GCNNMCSFCIVPFTR----GRERSRPVESIVKEVDELWKE------GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 243 GC~~~CsFC~vp~~~----G~~Rsr~~e~Iv~Ei~~l~~~------G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
-|.++|.||....+. ++....+.++|.++++.+... .++.++|.+. |.++
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~-----------------GEPT--- 92 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLS-----------------GEPT--- 92 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCC-----------------CCcc---
Confidence 699999999874321 234557889999999998765 3556666542 3332
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC-
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY- 391 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~- 391 (524)
. -.++.+|++.+.+.....-+=++ +.. + +++++.|.. ..++.+.+.+.+.+.+++++|++
T Consensus 93 -----L------y~~L~elI~~~k~~g~~~tflvT--Ngs-l-pdv~~~L~~----~dql~~sLdA~~~~~~~~InRP~~ 153 (296)
T COG0731 93 -----L------YPNLGELIEEIKKRGKKTTFLVT--NGS-L-PDVLEELKL----PDQLYVSLDAPDEKTFRRINRPHK 153 (296)
T ss_pred -----c------ccCHHHHHHHHHhcCCceEEEEe--CCC-h-HHHHHHhcc----CCEEEEEeccCCHHHHHHhcCCCC
Confidence 1 13588899888886532122222 221 2 788888874 47899999999999999999985
Q ss_pred --CHHHHHHHHHHHHHh-CCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 392 --TREAYLDLVQKIRQI-IPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 392 --t~e~~~~~v~~ir~~-~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
+.|.+.+.++.+++. .....+.+.++=|+ ..+.|++++..++++.+.++.+.+..|+ +||...+.
T Consensus 154 ~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~-N~~~e~~~~~a~ll~~~~Pd~velk~~~-rpgas~~~ 221 (296)
T COG0731 154 KDSWEKILEGLEIFRSEYKGRTVIRTTLVKGI-NDDEEELEEYAELLERINPDFVELKTYM-RPGASRYR 221 (296)
T ss_pred cchHHHHHHHHHHhhhcCCCcEEEEEEEeccc-cCChHHHHHHHHHHHhcCCCeEEEecCc-cCChHhhc
Confidence 689999999999986 33456778888888 5677889999999999999999998764 55655443
No 137
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.70 E-value=8.5e-08 Score=92.05 Aligned_cols=197 Identities=15% Similarity=0.229 Sum_probs=137.4
Q ss_pred EEEEEE-cccCCccCcccccCCC--CC--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 235 TAFVSV-MRGCNNMCSFCIVPFT--RG--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 235 ~a~v~i-sRGC~~~CsFC~vp~~--~G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
...++| +-||.-.|.||....- .| ..+...+++|+++.+...+.|-..|.+-. .+++.. |
T Consensus 84 CTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGa----AWRD~~--------G--- 148 (380)
T KOG2900|consen 84 CTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGA----AWRDMK--------G--- 148 (380)
T ss_pred eEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecch----hhhhhc--------c---
Confidence 344554 7899999999986542 23 25778999999999999999988776532 233211 2
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhhCC-ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLEFP-EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR 388 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~ 388 (524)
+...|..+++.+.++.. .+.+.++ ...++.+....|+++ |.....-.+.+. -+....+-
T Consensus 149 --------------Rk~~fk~IlE~ikevr~MgmEvCvT---LGMv~~qQAkeLKdA--GLTAYNHNlDTS-REyYskvI 208 (380)
T KOG2900|consen 149 --------------RKSAFKRILEMIKEVRDMGMEVCVT---LGMVDQQQAKELKDA--GLTAYNHNLDTS-REYYSKVI 208 (380)
T ss_pred --------------chhHHHHHHHHHHHHHcCCceeeee---eccccHHHHHHHHhc--cceecccCccch-hhhhcccc
Confidence 23456667766666532 2343332 345788899999999 988777666653 22222222
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC--CCeEEEEeeecCCCChhcccCCCCCCH
Q 041524 389 RGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG--YDMAYMFAYSMRERTHAHRNYVDDVPE 466 (524)
Q Consensus 389 R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~--~d~~~i~~~sp~pGT~~~~~~~~~v~~ 466 (524)
-.-+.++-++.++.+|++ ||.+.+.=|+|+ ||.++|..-.+--+..+. +..+-+..+.+.+|||+...-...++-
T Consensus 209 tTRtYDdRL~Ti~nvr~a--GikvCsGGIlGL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i 285 (380)
T KOG2900|consen 209 TTRTYDDRLQTIKNVREA--GIKVCSGGILGL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQI 285 (380)
T ss_pred eecchHHHHHHHHHHHHh--cceecccccccc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccccH
Confidence 234678999999999999 999999999999 999999766555555543 566778889999999998755455554
Q ss_pred HHH
Q 041524 467 EVK 469 (524)
Q Consensus 467 ~~k 469 (524)
+..
T Consensus 286 ~e~ 288 (380)
T KOG2900|consen 286 DEI 288 (380)
T ss_pred HHH
Confidence 433
No 138
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.61 E-value=1.3e-05 Score=82.90 Aligned_cols=179 Identities=11% Similarity=0.151 Sum_probs=130.1
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCC-CcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEG-VKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G-~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
.....++++.-|+.+|.||..........-.+.+...+-+..+.+.| +..+.+.|......
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~------------------ 79 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLR------------------ 79 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccc------------------
Confidence 45567789999999999998755433123455666666666777778 66666665332211
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHH-HhhhCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAV-LERMRRG 390 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~v-L~~m~R~ 390 (524)
.++.++++.+.+. +.+.+... .+...++++.++.++++ |+.++.+.+++..++. ....++.
T Consensus 80 --------------~d~~ei~~~~~~~-~~~~~~~~-TnG~~~~~~~~~~l~~~--g~~~v~iSid~~~~e~hd~~rg~~ 141 (347)
T COG0535 80 --------------PDLLEIVEYARKK-GGIRVSLS-TNGTLLTEEVLEKLKEA--GLDYVSISLDGLDPETHDPIRGVK 141 (347)
T ss_pred --------------ccHHHHHHHHhhc-CCeEEEEe-CCCccCCHHHHHHHHhc--CCcEEEEEecCCChhhhhhhcCCC
Confidence 3577777777654 34454444 23334789999999999 9999999999999999 4444556
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR 451 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~ 451 (524)
...+...+.++.+++. |+.+. +.+..++.+.+++.+.++++.+++++...++.+.+.
T Consensus 142 g~~~~~~~~i~~~~~~--g~~~~--~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~ 198 (347)
T COG0535 142 GVFKRAVEAIKNLKEA--GILVV--INTTVTKINYDELPEIADLAAELGVDELNVFPLIPV 198 (347)
T ss_pred cHHHHHHHHHHHHHHc--CCeee--EEEEEecCcHHHHHHHHHHHHHcCCCEEEEEEEeec
Confidence 7899999999999988 76533 333345779999999999999999987888777664
No 139
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.55 E-value=9e-06 Score=83.22 Aligned_cols=192 Identities=16% Similarity=0.225 Sum_probs=130.0
Q ss_pred CCCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHC-C------CcEEEEEeccCCCCCCccCCcccc
Q 041524 231 KNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE-G------VKEVTLLGQNVNSYNDTSGMEKEV 303 (524)
Q Consensus 231 ~~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G------~kei~l~d~n~~~y~~~~~~~~~~ 303 (524)
..+.+..|+++-||+-.|+||.... .|-.|..+..+|++.+....+. | +..|+|.|-
T Consensus 98 ~~r~tlCVSsQvGC~~~C~FCaTg~-~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGM--------------- 161 (349)
T COG0820 98 KDRNTLCVSSQVGCPVGCTFCATGQ-GGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGM--------------- 161 (349)
T ss_pred cCCceEEEecCCCcCCCCCeecccc-ccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecC---------------
Confidence 3567789999999999999999853 4668999999999999987643 2 456777652
Q ss_pred CCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc-eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH
Q 041524 304 EPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE-MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA 382 (524)
Q Consensus 304 ~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~-~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~ 382 (524)
|.++. +-......++.+....+. ..-|..+..+..+.+.+.++..+. +-..+.+.+.+.+++
T Consensus 162 --GEPl~-------------N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~--~~v~LAiSLHa~nd~ 224 (349)
T COG0820 162 --GEPLL-------------NLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQ--LGVALAISLHAPNDE 224 (349)
T ss_pred --Cchhh-------------hHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhc--CCeEEEEecCCCCHH
Confidence 33320 012233344444322211 111222233344666666666444 566799999999999
Q ss_pred HHhhh---CCCCCHHHHHHHHHHHHHhCCC-cEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 383 VLERM---RRGYTREAYLDLVQKIRQIIPD-VGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 383 vL~~m---~R~~t~e~~~~~v~~ir~~~pg-i~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
..+.+ +|.++.++..++++.-...-.. |.+..-++-|. .+..|+.++.++++..+.. ++.+-+|-|.||+. |.
T Consensus 225 lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY~Ll~~V-ND~~e~A~~L~~ll~~~~~-~VNLIP~Np~~~~~-y~ 301 (349)
T COG0820 225 LRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEYVLLDGV-NDSLEHAKELAKLLKGIPC-KVNLIPYNPVPGSD-YE 301 (349)
T ss_pred HHhhhhccccCCCHHHHHHHHHhhhhccCceEEEEeeecccc-cCCHHHHHHHHHHhcCCCc-eEEEeecCCCCCCC-cc
Confidence 98764 7788999998888877654222 33444555555 6678999999999988765 79999999999998 54
No 140
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.47 E-value=1.5e-05 Score=84.44 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=115.9
Q ss_pred cCcccccCCCCCccccCChHHHHHHHHHHHHC---CCcEEEEEec-cCCCCCCccCCccccCCCCccccccCcccchhcc
Q 041524 247 MCSFCIVPFTRGRERSRPVESIVKEVDELWKE---GVKEVTLLGQ-NVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVK 322 (524)
Q Consensus 247 ~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~---G~kei~l~d~-n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~ 322 (524)
.|.||......-.-+..++++|++|++..... ....|+|.|. ....+
T Consensus 38 ~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~----------------------------- 88 (404)
T TIGR03278 38 GCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY----------------------------- 88 (404)
T ss_pred CCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----------------------------
Confidence 67777443221123667999999999986542 3456777663 22211
Q ss_pred cchhhHHHHHHHHHhhCCceEEEEecCCC-CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHH
Q 041524 323 KMGLRFADLLDRLSLEFPEMRFRYTSPHP-KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQ 401 (524)
Q Consensus 323 ~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p-~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~ 401 (524)
..+.+|++.+.+..- .+.+...+. ...+++.++.++++ |+..+.+.+.|.+++..++|.+.-..+.+++.++
T Consensus 89 ---~~l~eLl~~lk~~gi--~taI~~TnG~~l~~~e~~~~L~~~--gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~ 161 (404)
T TIGR03278 89 ---PELEELTKGLSDLGL--PIHLGYTSGKGFDDPEIAEFLIDN--GVREVSFTVFATDPELRREWMKDPTPEASLQCLR 161 (404)
T ss_pred ---HHHHHHHHHHHhCCC--CEEEeCCCCcccCCHHHHHHHHHc--CCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHH
Confidence 358889998887532 233321222 24588999999998 9999999999999999999765545589999999
Q ss_pred HHHHhCCCcEEEEeEEEcCCCCCH-HHHHHHHHHHHHcCCCeEEEEeeecC
Q 041524 402 KIRQIIPDVGLSSDFICGFCGETE-EEHADTLTLMKAVGYDMAYMFAYSMR 451 (524)
Q Consensus 402 ~ir~~~pgi~i~~~fI~G~PgET~-ed~~~tl~~l~~l~~d~~~i~~~sp~ 451 (524)
.+.+. ..+.+..-+| ||-+. +++.+|++++.++++..+.+.+|...
T Consensus 162 ~L~e~-~~v~~~ivlI---PGiND~eel~~ti~~L~~lg~~~V~L~~y~~~ 208 (404)
T TIGR03278 162 RFCES-CEVHAASVII---PGVNDGDVLWKTCADLESWGAKALILMRFANT 208 (404)
T ss_pred HHHhc-CCEEEEEEEe---CCccCcHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 99885 3444555556 44454 45579999999999998999888654
No 141
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=98.44 E-value=3.9e-07 Score=80.26 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=62.7
Q ss_pred HHHHHHHHHHCCCeeccCC-------------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 93 MEIVLSIMKNAGYSEVINV-------------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~-------------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
.-.++..|++.||+..... ..++|+|++++++...... ...+..+ + ++.
T Consensus 16 ~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~~---~~~~~~~---~------------~~~ 77 (125)
T cd02065 16 KNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEA---MKLVIEA---L------------KEL 77 (125)
T ss_pred HHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEEecchHhHHHH---HHHHHHH---H------------Hhc
Confidence 5778888999999863221 1489999996554333222 2222222 1 223
Q ss_pred C-CCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHH
Q 041524 160 H-PPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLE 202 (524)
Q Consensus 160 p-~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~ 202 (524)
| +++|++||++++..|+. +.+|+++.||+|.+++++++
T Consensus 78 p~~~~ivvGG~~~t~~~~~-----~~~d~~~~Ge~e~~~~~l~~ 116 (125)
T cd02065 78 GIDIPVVVGGAHPTADPEE-----PKVDAVVIGEGEYAGPALLE 116 (125)
T ss_pred CCCCeEEEeCCcCCccccc-----cccceeeeCCeEEEccccch
Confidence 6 89999999999999987 57999999999999999986
No 142
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.42 E-value=1.7e-05 Score=84.79 Aligned_cols=179 Identities=11% Similarity=0.080 Sum_probs=118.3
Q ss_pred eEEEEE-EcccCCccCcccccCCCCC-----ccccCChHHHHHHHHHHHHC-CCcE--EEEEeccCCCCCCccCCccccC
Q 041524 234 VTAFVS-VMRGCNNMCSFCIVPFTRG-----RERSRPVESIVKEVDELWKE-GVKE--VTLLGQNVNSYNDTSGMEKEVE 304 (524)
Q Consensus 234 ~~a~v~-isRGC~~~CsFC~vp~~~G-----~~Rsr~~e~Iv~Ei~~l~~~-G~ke--i~l~d~n~~~y~~~~~~~~~~~ 304 (524)
....++ ++..|+.+|+||......+ .....+.+.+.+-|+.+.+. +.+. |.|.|......
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~----------- 81 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMR----------- 81 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCC-----------
Confidence 455566 4579999999999743211 11236777777767776654 5555 44455333222
Q ss_pred CCCccccccCcccchhcccchhhHHHHHHHHHhhCCc--eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH
Q 041524 305 PGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE--MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA 382 (524)
Q Consensus 305 ~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~--~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~ 382 (524)
+. ..+.++++.+.+.... +.+.+. .+...++++.++.+++. +. .|.|++... ++
T Consensus 82 -~~------------------~~~~~~~~~~~~~~~~~~i~~~i~-TNG~ll~~e~~~~l~~~--~~-~v~ISlDG~-~~ 137 (412)
T PRK13745 82 -PL------------------SFYKKALELQKKYARGRQIDNCIQ-TNGTLLTDEWCEFFREN--NF-LVGVSIDGP-QE 137 (412)
T ss_pred -cH------------------HHHHHHHHHHHHHcCCCceEEEEe-ecCEeCCHHHHHHHHHc--Ce-EEEEEecCC-HH
Confidence 10 1133333322222222 333333 46667899999999998 76 899999964 66
Q ss_pred HHhhhCC----CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 041524 383 VLERMRR----GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR 451 (524)
Q Consensus 383 vL~~m~R----~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~ 451 (524)
+-+..++ ..+.+.+.+.++.+++. |+.+.....+. .++.+++.+.++++.+++++.+++.++.+.
T Consensus 138 ~hD~~R~~~~g~gsf~~v~~~i~~l~~~--gi~~~i~~vv~--~~n~~~~~e~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 138 FHDEYRKNKMGKPSFVKVMKGINLLKKH--GVEWNAMAVVN--DFNADYPLDFYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred HhhhhcCCCCCCccHHHHHHHHHHHHHc--CCCEEEEEEEc--CCccccHHHHHHHHHHcCCCeEEEEeccCc
Confidence 6666653 24899999999999998 87766554443 567788899999999999999998887763
No 143
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.37 E-value=3.5e-06 Score=83.10 Aligned_cols=209 Identities=19% Similarity=0.216 Sum_probs=132.3
Q ss_pred EcccCCccCcccccCCCCCccc-cCChHHHHHHHHHHHHCCC-cEEEEEeccCCCCCCccCCccccCCCCccccccCccc
Q 041524 240 VMRGCNNMCSFCIVPFTRGRER-SRPVESIVKEVDELWKEGV-KEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNS 317 (524)
Q Consensus 240 isRGC~~~CsFC~vp~~~G~~R-sr~~e~Iv~Ei~~l~~~G~-kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~ 317 (524)
.+.-|-+.|.||+........| ...+++|++---.+.+..+ ..+++.. .+.-. + |.
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSS-Gvi~~------------~-Dy-------- 117 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSS-GVIKN------------P-DY-------- 117 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheecc-ccccC------------c-ch--------
Confidence 3677999999999755444443 4678888876555555433 3333332 22111 1 00
Q ss_pred chhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHH
Q 041524 318 MCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYL 397 (524)
Q Consensus 318 ~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~ 397 (524)
....+.+.++.+.-. ..++ .++|.+.++..--++++++.--|.++++.+|...++.|+.+--..+.-++.
T Consensus 118 ------TmE~mi~var~LRle-~~f~---GYIHlK~IPgas~~li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~ 187 (404)
T COG4277 118 ------TMEEMIEVARILRLE-HKFR---GYIHLKIIPGASPDLIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDIL 187 (404)
T ss_pred ------HHHHHHHHHHHHhhc-cccC---cEEEEEecCCCCHHHHHHHhhhhheeEEeEecCCcchhhhhCCCCChHHHH
Confidence 012233333333211 1111 124444444333334444412478999999999999999998777778888
Q ss_pred HHHHHHHHhC-------------CCc---EEEEeEEEcCCCCCHHHHHHHHHHHH-HcCCCeEEEEeeecCCCChhcccC
Q 041524 398 DLVQKIRQII-------------PDV---GLSSDFICGFCGETEEEHADTLTLMK-AVGYDMAYMFAYSMRERTHAHRNY 460 (524)
Q Consensus 398 ~~v~~ir~~~-------------pgi---~i~~~fI~G~PgET~ed~~~tl~~l~-~l~~d~~~i~~~sp~pGT~~~~~~ 460 (524)
+.+.++|..+ |.+ .-++.+|+|-.|||++++....+.+- ..++.+++++.|+|.|+||+--
T Consensus 188 r~Mg~ir~~i~e~~e~~~r~r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp-- 265 (404)
T COG4277 188 RSMGWIRLKILENAEDKRRKRHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLP-- 265 (404)
T ss_pred HHHHHHHHHHhhcccchhhhccCccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCc--
Confidence 8888887621 222 24689999999999999988776664 5688899999999999999853
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 041524 461 VDDVPEEVKQRRLTELIEAFRES 483 (524)
Q Consensus 461 ~~~v~~~~k~~Rl~~l~~~~~~~ 483 (524)
++-|..+.+-|+-+...+.+-.
T Consensus 266 -~~~pplmRehRLYQADwLlrfY 287 (404)
T COG4277 266 -DDKPPLMREHRLYQADWLLRFY 287 (404)
T ss_pred -ccCCchhHHHHHHHHHHHHHHh
Confidence 5556667777776666555433
No 144
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.30 E-value=0.00013 Score=76.79 Aligned_cols=171 Identities=12% Similarity=0.145 Sum_probs=111.9
Q ss_pred EEEcccCCccCcccccCCCCC-c----cccCChHHHHHHHHHHHHC--CCcEEEEEeccCCCCCCccCCccccCCCCccc
Q 041524 238 VSVMRGCNNMCSFCIVPFTRG-R----ERSRPVESIVKEVDELWKE--GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR 310 (524)
Q Consensus 238 v~isRGC~~~CsFC~vp~~~G-~----~Rsr~~e~Iv~Ei~~l~~~--G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~ 310 (524)
+.++.+|+.+|.||..+.... + ....+.+.+..-++.+.+. +...|.|.|...... +
T Consensus 9 ~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~------------~---- 72 (370)
T PRK13758 9 KPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLA------------G---- 72 (370)
T ss_pred ecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccC------------C----
Confidence 344589999999998764211 1 1124555555555555443 344567776332221 0
Q ss_pred cccCcccchhcccchhhHHHHHHHHHhhC-CceEE--EEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh
Q 041524 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEF-PEMRF--RYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387 (524)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~i--r~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m 387 (524)
...+.++++.+.+.. ..+.+ .++ .+...++++.++.+++. +. .+.|.+... +++-+.+
T Consensus 73 --------------~~~~~~~~~~~~~~~~~~~~~~~~i~-TNG~ll~~~~~~~l~~~--~~-~v~iSlDg~-~~~hd~~ 133 (370)
T PRK13758 73 --------------LEFFEELMELQRKHNYKNLKIYNSLQ-TNGTLIDESWAKFLSEN--KF-LVGLSMDGP-KEIHNLN 133 (370)
T ss_pred --------------hHHHHHHHHHHHHhccCCCeEEEEEE-ecCEecCHHHHHHHHHc--Cc-eEEEeecCC-HHHhccc
Confidence 012446666555432 12233 333 45566889999999987 66 899999986 5676777
Q ss_pred CC----CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Q 041524 388 RR----GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 388 ~R----~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~ 447 (524)
++ ..+.+.+.+.++.+++. ++.+..-+++. ..+.+++.+.++++.+++++.+.+..
T Consensus 134 R~~~~g~~~f~~v~~~i~~l~~~--~~~~~i~~~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 134 RKDCCGLDTFSKVERAAELFKKY--KVEFNILCVVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred cCCCCCCccHHHHHHHHHHHHHh--CCCceEEEEec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 63 45889999999999998 77666666665 35778899999999999998776543
No 145
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.28 E-value=8.9e-05 Score=75.69 Aligned_cols=182 Identities=20% Similarity=0.221 Sum_probs=135.5
Q ss_pred CCCeEEEEEEcccCCccCcccccCCCCCc-cccCChHHHHHHHHHHHHC-CCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 231 KNSVTAFVSVMRGCNNMCSFCIVPFTRGR-ERSRPVESIVKEVDELWKE-GVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 231 ~~~~~a~v~isRGC~~~CsFC~vp~~~G~-~Rsr~~e~Iv~Ei~~l~~~-G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
....++.+.++-+|+-.|.||.-...-|. -...+.+++-.-+.++.+. -+.+|.|.|.+-.+.
T Consensus 108 rY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~l--------------- 172 (369)
T COG1509 108 RYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSL--------------- 172 (369)
T ss_pred ecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCcccc---------------
Confidence 34557888899999999999976554443 2335888888888888776 789999998654432
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEec----CCCCCCCHHHHHHHHcCCCCcceeecC--cCCcCHH
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTS----PHPKDFPDELLYIMRDRPNVCKYIHLP--AQTGNSA 382 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s----~~p~~~~~elL~~l~~~~~G~~~i~ig--iESgs~~ 382 (524)
+ ...+..|++++.++.....+|+.+ ..|..+++++.+.+.+. -..+.+- +.+..
T Consensus 173 ---s------------~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~---~~~v~~~tH~NHp~-- 232 (369)
T COG1509 173 ---S------------DKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKS---RKPVWLVTHFNHPN-- 232 (369)
T ss_pred ---C------------HHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhcc---CceEEEEcccCChh--
Confidence 1 257999999999987777899987 46788899999999884 2333332 22211
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHhCCCcEEE--EeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 383 VLERMRRGYTREAYLDLVQKIRQIIPDVGLS--SDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 383 vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~--~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
-. .++..++++.++++ |+.+. +=++-|. .++.+-+.+..+-+..+++---++|..-+.+|+.-+.
T Consensus 233 -------Ei-t~e~~~A~~~L~~a--Gv~l~NQsVLLrGV-ND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr 299 (369)
T COG1509 233 -------EI-TPEAREACAKLRDA--GVPLLNQSVLLRGV-NDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFR 299 (369)
T ss_pred -------hc-CHHHHHHHHHHHHc--Cceeecchheeccc-CCCHHHHHHHHHHHHHcCCcceEEeccCccCCcccee
Confidence 11 25778999999999 98764 4556676 8999999999999988887766777888889988774
No 146
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.21 E-value=8.6e-05 Score=75.53 Aligned_cols=186 Identities=15% Similarity=0.183 Sum_probs=121.7
Q ss_pred EEEEEcccCCccCcccccCCCCCcc-cc----CChHHHHHHHHHHHH-CCCcE-EEEEeccCCCCCCccCCccccCCCCc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRGRE-RS----RPVESIVKEVDELWK-EGVKE-VTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G~~-Rs----r~~e~Iv~Ei~~l~~-~G~ke-i~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
..+..-+||.+.|.||....+.+.. .+ ...+.+++.++.-.. .+.+. ...++-+.-.|. +
T Consensus 31 y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyq-------------p 97 (297)
T COG1533 31 YTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQ-------------P 97 (297)
T ss_pred eecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCC-------------c
Confidence 4567789999999999987665543 22 233447777765543 34443 334444433341 0
Q ss_pred cccccCcccchhcccchhhHH-HHHHHHHhhCCceEEEEecCCC-CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 309 WRLSEGFNSMCKVKKMGLRFA-DLLDRLSLEFPEMRFRYTSPHP-KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~-~Ll~~l~~~~~~~~ir~~s~~p-~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
.+....+. .+++.+.+. ..++.+.+=.+ ..-|-++|..|+.. +...+.+.+-+.+.++.+.
T Consensus 98 -------------~E~~~~ltR~ilei~~~~--~~~v~I~TKS~lv~RDld~l~~~~~~--~~v~V~~Sitt~d~~l~k~ 160 (297)
T COG1533 98 -------------IEKEYRLTRKILEILLKY--GFPVSIVTKSALVLRDLDLLLELAER--GKVRVAVSITTLDEELAKI 160 (297)
T ss_pred -------------chHHHHHHHHHHHHHHHc--CCcEEEEECCcchhhhHHHHHhhhhc--cceEEEEEeecCcHHHHHh
Confidence 00111222 233333332 23444443211 11244567766665 6778999999998889999
Q ss_pred hCCCC-CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCC
Q 041524 387 MRRGY-TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRER 453 (524)
Q Consensus 387 m~R~~-t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pG 453 (524)
+--+. +.++-+++++.+.++ |+.+...+--=+|+.+.+++++.++.+.+.+...+....+....+
T Consensus 161 ~EP~apsp~~Ri~al~~l~ea--Gi~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 161 LEPRAPSPEERLEALKELSEA--GIPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred cCCCCcCHHHHHHHHHHHHHC--CCeEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeeccHH
Confidence 87654 789999999999999 988887776667999999999999999999998877666554444
No 147
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.17 E-value=0.0001 Score=75.15 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=102.3
Q ss_pred CChHHHHHHHHHHHH---CCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhh-HHHHHHHHHhh
Q 041524 263 RPVESIVKEVDELWK---EGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLR-FADLLDRLSLE 338 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~---~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~-~~~Ll~~l~~~ 338 (524)
.+.+++++++..... .+...|.|.|.....+ .. +.++++.+.+.
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~--------------------------------~~~l~~l~~~~k~~ 153 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQ--------------------------------PEFALALLQACHER 153 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeCcchhch--------------------------------HHHHHHHHHHHHHc
Confidence 467888888776432 2345677776333221 23 35778777664
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 339 FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 339 ~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
. +.+.+.+ +. .+.++.++.+.. .+..+.+.+.+.+++..+.+.. .+.+.+++.++.+.+....+.+..-+|.
T Consensus 154 g--~~~~i~T-nG-~~~~~~~~~ll~---~~d~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~ 225 (295)
T TIGR02494 154 G--IHTAVET-SG-FTPWETIEKVLP---YVDLFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIP 225 (295)
T ss_pred C--CcEeeeC-CC-CCCHHHHHHHHh---hCCEEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeC
Confidence 2 3444443 22 234455555554 3567788999999998887754 4778899999999998222344555565
Q ss_pred cCCCCCHHHHHHHHHHHHHcC--CCeEEEEeeecCCCChh
Q 041524 419 GFCGETEEEHADTLTLMKAVG--YDMAYMFAYSMRERTHA 456 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~--~d~~~i~~~sp~pGT~~ 456 (524)
|+ .++.+++.+.++++.+++ +..+.+.+|.|....+.
T Consensus 226 ~~-n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g~~~~ 264 (295)
T TIGR02494 226 GF-NDSEENIEAIAAFLRKLEPGVDEIDLLPYHRLGENKY 264 (295)
T ss_pred Cc-CCCHHHHHHHHHHHHHhccCCceEEecCCCchhHHHH
Confidence 65 478899999999999998 67888888888776654
No 148
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.16 E-value=0.00019 Score=75.51 Aligned_cols=197 Identities=13% Similarity=0.152 Sum_probs=127.2
Q ss_pred CCccCcccccCCCCCccccCChHHHHHHHHHHHHC-CCcE--EEEEeccCCCCCCccCCccccCCCCccccccCcccchh
Q 041524 244 CNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKE-GVKE--VTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCK 320 (524)
Q Consensus 244 C~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~-G~ke--i~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~ 320 (524)
|+.+|.||..+......+..+.+.+.+-|+.+.+. +... |.+.| |.|+-.
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~G------------------GEPlL~--------- 70 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQG------------------GEPLLA--------- 70 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEEC------------------Cccccc---------
Confidence 99999999886543333356777776677777654 4455 44444 333211
Q ss_pred cccchhhHHHHHHHHHhh-CCceEEEEec-CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC----CCCHH
Q 041524 321 VKKMGLRFADLLDRLSLE-FPEMRFRYTS-PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR----GYTRE 394 (524)
Q Consensus 321 ~~~~~~~~~~Ll~~l~~~-~~~~~ir~~s-~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R----~~t~e 394 (524)
+..|.+.+..+.+. ....++..+- .+...++++..+.+++. +. .|-|.+. |..++-+..|+ ..|.+
T Consensus 71 ----~~~f~~~~~~l~~k~~~~~~i~~siqTNg~LL~~e~~e~l~~~--~~-~IgISiD-Gp~eihD~~R~~~~GkgTfd 142 (378)
T COG0641 71 ----GLDFYRKAVALQQKYANGKTISNALQTNGTLLNDEWAEFLAEH--DF-LIGISID-GPEEIHDKYRVTKSGKGTFD 142 (378)
T ss_pred ----hHHHHHHHHHHHHHHhcCCeeEEEEEEcccccCHHHHHHHHhc--Cc-eEEEecc-CchHhccccccCCCCCccHH
Confidence 12333333333222 1234554332 56778999999999998 77 7777776 44666665553 34899
Q ss_pred HHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHH
Q 041524 395 AYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLT 474 (524)
Q Consensus 395 ~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~ 474 (524)
.+.+.++.+++. ++.+..-.. ...++.+...+.++++.+.+...+.+.+.....++.. ......++...-.+.+.
T Consensus 143 ~i~~~i~~L~~~--~v~~~~~~v--v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~-~~~~~~~~~~~~~~fl~ 217 (378)
T COG0641 143 RVMKGLELLQAH--GVDFNTLTV--VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGD-SLLEFSVTAEEYGQFLI 217 (378)
T ss_pred HHHHHHHHHHHc--CCcEEEEEE--EchhHhhCHHHHHHHHHHcccceEEEEecccCCCCCc-cccccccCHHHHHHHHH
Confidence 999999999998 877666555 5678999999999999999988788766655554432 11223566555555555
Q ss_pred HHHHHH
Q 041524 475 ELIEAF 480 (524)
Q Consensus 475 ~l~~~~ 480 (524)
.+.+..
T Consensus 218 ~~~~~~ 223 (378)
T COG0641 218 AIFDEW 223 (378)
T ss_pred HHHHHH
Confidence 544433
No 149
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=98.14 E-value=5.6e-05 Score=75.96 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=94.2
Q ss_pred CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCH-HH
Q 041524 349 PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETE-EE 427 (524)
Q Consensus 349 ~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~-ed 427 (524)
.+|+.--...|..|-.. ||.++.||+||.-+++-+.-|||+|+..+-+.+..++++ |..+.+.+|-.+|.-.. .|
T Consensus 229 TRPDyC~~~Hl~~ML~Y--GCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDa--G~KvV~HMMPdLPNVg~eRD 304 (554)
T KOG2535|consen 229 TRPDYCLKRHLSDMLTY--GCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDA--GFKVVAHMMPDLPNVGMERD 304 (554)
T ss_pred cCcccchhhhHHHHHhc--CCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhcc--CceeehhhCCCCCCCchhhh
Confidence 57877777788888888 999999999999999999999999999999999999999 99999999999998654 46
Q ss_pred HHHHHHHHHH--cCCCeEEEEeeecCCCChhcccCC
Q 041524 428 HADTLTLMKA--VGYDMAYMFAYSMRERTHAHRNYV 461 (524)
Q Consensus 428 ~~~tl~~l~~--l~~d~~~i~~~sp~pGT~~~~~~~ 461 (524)
+++-.++.+. .+.|.+.+++-....||-+|+.|+
T Consensus 305 ieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWK 340 (554)
T KOG2535|consen 305 IEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWK 340 (554)
T ss_pred HHHHHHHhcCcCcCCCcceecceEEEecccHHHHHh
Confidence 6666666664 467888999988999999987543
No 150
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00042 Score=69.37 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=109.6
Q ss_pred EEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHH-HHH--HCCCcEEEEEeccCCCCCCccCCccccCCCCcccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVD-ELW--KEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL 311 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~-~l~--~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~ 311 (524)
..++-..-||+++|.||.-|.++..-+..+.+.+..|+- ... ..+..-|++.|......
T Consensus 36 ~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q------------------ 97 (260)
T COG1180 36 IRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQ------------------ 97 (260)
T ss_pred EEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhh------------------
Confidence 555666899999999999887654212333333332222 221 12567788776433221
Q ss_pred ccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 312 SEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
..-+.++++...+. .....+.+ -..++++.++.+.+. +..+.+-+=..+++..+.+- +.
T Consensus 98 -------------~e~~~~~~~~ake~--Gl~~~l~T--nG~~~~~~~~~l~~~---~D~v~~DlK~~~~~~y~~~t-g~ 156 (260)
T COG1180 98 -------------AEFALDLLRAAKER--GLHVALDT--NGFLPPEALEELLPL---LDAVLLDLKAFDDELYRKLT-GA 156 (260)
T ss_pred -------------HHHHHHHHHHHHHC--CCcEEEEc--CCCCCHHHHHHHHhh---cCeEEEeeccCChHHHHHHh-CC
Confidence 12355666666554 23444432 234567777777664 67788888888988655554 44
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEEeee
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGY-DMAYMFAYS 449 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~-d~~~i~~~s 449 (524)
+.+.+++.++.+.+...-+.++.-+|-|+ .+.++++++..+|+.++.. .-+++.+|.
T Consensus 157 ~~~~vl~~~~~l~~~g~~ve~r~lviPg~-~d~~e~i~~i~~~i~~~~~~~p~~~l~fh 214 (260)
T COG1180 157 DNEPVLENLELLADLGVHVEIRTLVIPGY-NDDEEEIRELAEFIADLGPEIPIHLLRFH 214 (260)
T ss_pred CcHHHHHHHHHHHcCCCeEEEEEEEECCC-CCCHHHHHHHHHHHHhcCCcccEEEeccc
Confidence 44999999999999722334566777666 6799999999999998533 234444443
No 151
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.04 E-value=0.00025 Score=70.07 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=92.5
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCC-----ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRG-----RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPG 306 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G-----~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g 306 (524)
..+..||.+ .||+.+|.||..+.... .++..+.++++++++.+...|++.|.|+|.....+
T Consensus 21 G~~~~FvR~-~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~------------- 86 (238)
T TIGR03365 21 GQKTMFVRT-GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ------------- 86 (238)
T ss_pred CCeEEEEEe-CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-------------
Confidence 456778885 69999999999765321 23357899999999988666788999998443322
Q ss_pred CccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 307 ANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
..+.+|++.+.+.. ..+.+.+ +.. +..+ .++. +.++.+.+-..++
T Consensus 87 -------------------~~l~~li~~l~~~g--~~v~leT-NGt-l~~~---~l~~----~d~v~vs~K~~~s----- 131 (238)
T TIGR03365 87 -------------------KPLGELIDLGKAKG--YRFALET-QGS-VWQD---WFRD----LDDLTLSPKPPSS----- 131 (238)
T ss_pred -------------------HhHHHHHHHHHHCC--CCEEEEC-CCC-CcHH---HHhh----CCEEEEeCCCCCC-----
Confidence 24788888887652 3455543 222 2233 2333 3366666664443
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 387 m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
+.....+...+.++.+++ +.....-|+++ ++.|++...++....
T Consensus 132 -g~~~~~~~~~~~ik~l~~---~~~~~vK~Vv~----~~~d~~~a~~~~~~~ 175 (238)
T TIGR03365 132 -GMETDWQALDDCIERLDD---GPQTSLKVVVF----DDADYAYAKEVHARY 175 (238)
T ss_pred -CCCCcHHHHHHHHHHhhh---cCceEEEEEEC----CcccHHHHHHHHHhc
Confidence 112246666777777765 35667777777 233344444444443
No 152
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.89 E-value=0.00022 Score=74.17 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=111.6
Q ss_pred hHHHHHHHHHhhCCc--eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHH
Q 041524 327 RFADLLDRLSLEFPE--MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIR 404 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~--~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir 404 (524)
++.++....+...+. .++.+++-.-...+ +..+.+-++ |...+.+.+.|.++++.++|-|....++.++.++++.
T Consensus 95 ~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt-~~~~~i~~~--gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~ 171 (414)
T COG1625 95 DLEPRGRRARLYYKDDDIRLSFTSGSGFTLT-NRAERIIDA--GVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFA 171 (414)
T ss_pred chhhhhhHHHhhcCCccceeeeeeccceecc-chHHHHHHc--CCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 466666666665534 44555544433333 344446667 9999999999999999999999999999999999999
Q ss_pred HhCCCcEEEEeEEEcCCCCC-HHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHHHHHHH
Q 041524 405 QIIPDVGLSSDFICGFCGET-EEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRES 483 (524)
Q Consensus 405 ~~~pgi~i~~~fI~G~PgET-~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~~~~~~ 483 (524)
+. ++.+.+++++= ||=+ -+++.+|++-+.+.+.+.+.++.+.|.=-|.... .+-...+..-+.++..+.++.
T Consensus 172 ~~--~~~v~a~iVl~-PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~----~~i~~~t~~~l~~~k~i~re~ 244 (414)
T COG1625 172 ER--CIEVHAQIVLC-PGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNR----PGIRPPTPHELEEFKEIVREF 244 (414)
T ss_pred Hh--hhheeeEEEEc-CCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCC----CCCCCCCHHHHHHHHHHHHHH
Confidence 99 88999987764 8887 8999999999999999988887755654443332 234444555666666666666
Q ss_pred HHHHH
Q 041524 484 TGQCY 488 (524)
Q Consensus 484 ~~~~~ 488 (524)
..+..
T Consensus 245 ~~E~~ 249 (414)
T COG1625 245 DRELG 249 (414)
T ss_pred HHhcC
Confidence 55555
No 153
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=97.76 E-value=0.00095 Score=66.21 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=106.4
Q ss_pred ccCCccCcccccCCC--CCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccch
Q 041524 242 RGCNNMCSFCIVPFT--RGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMC 319 (524)
Q Consensus 242 RGC~~~CsFC~vp~~--~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~ 319 (524)
-||+++|-||.-.-. .|.-+...++++.+=+..+.+.|.+.|.|++.+.+.+
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~-------------------------- 179 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPH-------------------------- 179 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCc--------------------------
Confidence 599999999986532 2334567788888888888888999999998554322
Q ss_pred hcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecC-cCCcCHHHHhhhCCCCC-HHHHH
Q 041524 320 KVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLP-AQTGNSAVLERMRRGYT-REAYL 397 (524)
Q Consensus 320 ~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~ig-iESgs~~vL~~m~R~~t-~e~~~ 397 (524)
...+.+.|+.+....|..| .| -...+.|.+++|. |..-|.+| +-=|+++--.+..|--+ .+-+.
T Consensus 180 -----lp~Ile~l~~~~~~iPvvw---NS--nmY~s~E~l~lL~----gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~ 245 (335)
T COG1313 180 -----LPFILEALRYASENIPVVW---NS--NMYMSEETLKLLD----GVVDIYLPDFKYGNDECAEKYSKVPNYWEVVT 245 (335)
T ss_pred -----hHHHHHHHHHHhcCCCEEE---ec--CCccCHHHHHHhh----ccceeeecccccCCHHHHHHhhcCCchHHHHH
Confidence 1235555555554444444 22 2356899999995 55556555 45678888777777433 56666
Q ss_pred HHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 398 DLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 398 ~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
+.+..+.+...|+-|.--++ ||--+.--..-++|+.+.-.+.+.+.
T Consensus 246 rn~~~~~~~~g~~iiRHLVl---PghlecCTkpI~~wiae~~g~~~~vN 291 (335)
T COG1313 246 RNILEAKEQVGGLIIRHLVL---PGHLECCTKPILRWIAENLGNDVRVN 291 (335)
T ss_pred HHHHHHHHhcCceEEEEEec---CCchhhccHHHHHHHHHhCCCCeeEE
Confidence 77777777655565555554 65444435667899988766555543
No 154
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.75 E-value=0.0017 Score=68.82 Aligned_cols=81 Identities=9% Similarity=0.123 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCH-HHHHHH
Q 041524 353 DFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETE-EEHADT 431 (524)
Q Consensus 353 ~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~-ed~~~t 431 (524)
.++++-++.+.+. ...-+.+.+.|.+++..++|-+.-..+++++.++++.++ ||.+++.+++ .||=+. +++++|
T Consensus 125 Nl~~~d~~RI~~~--~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~--~I~~h~qiVl-cPGiNDg~~L~~T 199 (433)
T TIGR03279 125 NLPPAEWQRIEQL--RLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER--RLQLHAQVVV-CPGINDGKHLERT 199 (433)
T ss_pred CCCHHHHHHHHHc--CCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHc--CCeEEEEEEE-cCCcCCHHHHHHH
Confidence 4567777777777 789999999999999999998777899999999999999 9999988665 488766 799999
Q ss_pred HHHHHHc
Q 041524 432 LTLMKAV 438 (524)
Q Consensus 432 l~~l~~l 438 (524)
+..+.++
T Consensus 200 i~dL~~~ 206 (433)
T TIGR03279 200 LRDLAQF 206 (433)
T ss_pred HHHHHhh
Confidence 9999998
No 155
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.09 E-value=0.0032 Score=55.04 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=53.3
Q ss_pred HHHHHHHHHHCCCeeccCC-------------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 93 MEIVLSIMKNAGYSEVINV-------------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~-------------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
.-.++..|+..||+++... ..++|+|+|++. .+... ..+.+.++.+ + +..
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~-~~~~~-~~~~~~i~~l---~------------~~~ 78 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGL-LTTHM-TLMKEVIEEL---K------------EAG 78 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc-ccccH-HHHHHHHHHH---H------------HcC
Confidence 7789999999999863211 148999999443 23322 2333444333 1 123
Q ss_pred C-CCEEEEEcccccccHHHHHhhCCcceEEECCC
Q 041524 160 H-PPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192 (524)
Q Consensus 160 p-~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ge 192 (524)
+ +++|++||.+++..++.+.+ -.+|.++...
T Consensus 79 ~~~~~i~vGG~~~~~~~~~~~~--~G~D~~~~~~ 110 (119)
T cd02067 79 LDDIPVLVGGAIVTRDFKFLKE--IGVDAYFGPA 110 (119)
T ss_pred CCCCeEEEECCCCChhHHHHHH--cCCeEEECCH
Confidence 5 78999999999987765543 4689988753
No 156
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=97.09 E-value=0.014 Score=59.08 Aligned_cols=165 Identities=20% Similarity=0.284 Sum_probs=106.0
Q ss_pred EEEEEcccCCccCcccccCCC-CCc------cc-cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCC
Q 041524 236 AFVSVMRGCNNMCSFCIVPFT-RGR------ER-SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGA 307 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~-~G~------~R-sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~ 307 (524)
..|-++-=||..|-||.+... .|+ .| -.+.++|+.|+......| +-++| |.
T Consensus 30 lVlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~G---asiTG------------------Gd 88 (353)
T COG2108 30 LVLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALG---ASITG------------------GD 88 (353)
T ss_pred eEEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccc---ccccC------------------CC
Confidence 456677889999999988643 232 11 245677777777664444 34444 22
Q ss_pred ccccccCcccchhcccchhhHHHHHHHHHhhCCc-eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 308 NWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE-MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~-~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
++ -.-.+..+.++.+++.++. +.+.+ +.++...+++.|+.|.++ |..-|-+-.-.-+
T Consensus 89 Pl-------------~~ieR~~~~ir~LK~efG~~fHiHL-YT~g~~~~~e~l~~L~eA--GLDEIRfHp~~~~------ 146 (353)
T COG2108 89 PL-------------LEIERTVEYIRLLKDEFGEDFHIHL-YTTGILATEEALKALAEA--GLDEIRFHPPRPG------ 146 (353)
T ss_pred hH-------------HHHHHHHHHHHHHHHhhccceeEEE-eeccccCCHHHHHHHHhC--CCCeEEecCCCcc------
Confidence 21 0124566777777776642 34443 345667899999999999 9875443321111
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeec
Q 041524 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 387 m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp 450 (524)
....+.+++.+..+++. |+.+... |-..||+ ++.+.+.++++.+.+.+.+++.-+-.
T Consensus 147 ---~~~~e~~i~~l~~A~~~--g~dvG~E-iPaipg~-e~~i~e~~~~~~~~~~~FlNiNELE~ 203 (353)
T COG2108 147 ---SKSSEKYIENLKIAKKY--GMDVGVE-IPAIPGE-EEAILEFAKALDENGLDFLNINELEF 203 (353)
T ss_pred ---ccccHHHHHHHHHHHHh--Cccceee-cCCCcch-HHHHHHHHHHHHhcccceeeeeeeee
Confidence 02357899999999998 6554433 4556765 45566788999999988888876643
No 157
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=96.88 E-value=0.12 Score=50.30 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=107.2
Q ss_pred ccCChHHHHHHHHHHHH---CCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHh
Q 041524 261 RSRPVESIVKEVDELWK---EGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSL 337 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~---~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~ 337 (524)
+..++++|++++..-.. .+-.-|+|.|.....+ ..-+.++++++.+
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq-------------------------------~~fl~~l~~~~k~ 65 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQ-------------------------------AEFATRFLQRLRL 65 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcC-------------------------------HHHHHHHHHHHHH
Confidence 44789999999887532 2334577776443322 1124577777766
Q ss_pred hCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 338 EFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 338 ~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
.. +...+.+. ...+.+.++.+.. .+..+.+-+=+.+++..+.+- |.+.+.+++.++.+.+....+.+.+-+|
T Consensus 66 ~g--i~~~leTn--G~~~~~~~~~l~~---~~D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vI 137 (213)
T PRK10076 66 WG--VSCAIETA--GDAPASKLLPLAK---LCDEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLI 137 (213)
T ss_pred cC--CCEEEECC--CCCCHHHHHHHHH---hcCEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 42 33334322 2356677777765 477888888899998877774 4678999999999999844456788888
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR 451 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~ 451 (524)
-|+ .+++|++++..+|+..++++.+++.+|.+.
T Consensus 138 Pg~-nd~~e~i~~ia~~l~~l~~~~~~llpyh~~ 170 (213)
T PRK10076 138 PGF-TLSRENMQQALDVLIPLGIKQIHLLPFHQY 170 (213)
T ss_pred CCC-CCCHHHHHHHHHHHHHcCCceEEEecCCcc
Confidence 776 578999999999999998888888888875
No 158
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=96.85 E-value=0.0039 Score=56.99 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=39.0
Q ss_pred EEEEEcccCCccCcccccCCCCCc--cccCChHHHHHHHHHHHHCCCcEEEEEecc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRGR--ERSRPVESIVKEVDELWKEGVKEVTLLGQN 289 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G~--~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n 289 (524)
.++-.-.|||.+|.||..+..+.. ....+.++++++|+.+.. .+..|+|+|..
T Consensus 17 ~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~-~~~gVt~SGGE 71 (147)
T TIGR02826 17 SLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRS-LISCVLFLGGE 71 (147)
T ss_pred EEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCC-CCCEEEEechh
Confidence 334445799999999998866432 346789999999888653 35678888865
No 159
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=96.82 E-value=0.0025 Score=55.49 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=43.0
Q ss_pred cccCCccCcccccCCCCC--ccccCChHHHHHHHHHHHHCCC--cEEEEEeccCCCCCCccCCccccCCCCccccccCcc
Q 041524 241 MRGCNNMCSFCIVPFTRG--RERSRPVESIVKEVDELWKEGV--KEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFN 316 (524)
Q Consensus 241 sRGC~~~CsFC~vp~~~G--~~Rsr~~e~Iv~Ei~~l~~~G~--kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~ 316 (524)
..+|+.+|.||....... .....+.+.+.+.++.+.+.+. ..|.|.|.....+.
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~---------------------- 62 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYL---------------------- 62 (119)
T ss_dssp -S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGST----------------------
T ss_pred cCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCcccc----------------------
Confidence 689999999999755332 3566788899999988877766 56888885443220
Q ss_pred cchhcccchhhHHHHHHHHHhhCCceEEEEec
Q 041524 317 SMCKVKKMGLRFADLLDRLSLEFPEMRFRYTS 348 (524)
Q Consensus 317 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s 348 (524)
....+.++++.+.+..+...+.+.+
T Consensus 63 -------~~~~l~~~i~~~~~~~~~~~i~i~T 87 (119)
T PF13394_consen 63 -------NPEDLIELIEYLKERGPEIKIRIET 87 (119)
T ss_dssp -------THHHHHHHHCTSTT-----EEEEEE
T ss_pred -------CHHHHHHHHHHHHhhCCCceEEEEe
Confidence 1235778888877776556666664
No 160
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.82 E-value=0.045 Score=50.55 Aligned_cols=156 Identities=15% Similarity=0.199 Sum_probs=98.1
Q ss_pred cccCCccCcccccCCCCC----ccccCChHHHHHHHHHHHHC-CCcEEEEEeccCCCCCCccCCccccCCCCccccccCc
Q 041524 241 MRGCNNMCSFCIVPFTRG----RERSRPVESIVKEVDELWKE-GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGF 315 (524)
Q Consensus 241 sRGC~~~CsFC~vp~~~G----~~Rsr~~e~Iv~Ei~~l~~~-G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~ 315 (524)
.-||+..|.||...+.+- .+...+|++|++.+..+.+. |...+.+.|.....-
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~l~---------------------- 105 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPILG---------------------- 105 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCcccc----------------------
Confidence 589999999998743322 23457899999998888664 888888876432211
Q ss_pred ccchhcccchhhHHHHHHHHHhhCCceEEEEecC-CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC--
Q 041524 316 NSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT-- 392 (524)
Q Consensus 316 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~-~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t-- 392 (524)
..++.++++.+.+ ..+-+.+. ---.++..+.+.+...++. .+-+.+--.+++-..++-- .+
T Consensus 106 ---------~EHvlevIeLl~~----~tFvlETNG~~~g~drslv~el~nr~nv--~vRVsvKG~dpesF~kIT~-asp~ 169 (228)
T COG5014 106 ---------REHVLEVIELLVN----NTFVLETNGLMFGFDRSLVDELVNRLNV--LVRVSVKGWDPESFEKITG-ASPE 169 (228)
T ss_pred ---------HHHHHHHHHhccC----ceEEEEeCCeEEecCHHHHHHHhcCCce--EEEEEecCCCHHHHHHHhc-CChH
Confidence 2456666665532 22222211 1123589999999987554 4555666778888777642 22
Q ss_pred -HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 393 -REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 393 -~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
..--+++++.+.+. |+.+..-++.+|- +++..++....+-++
T Consensus 170 ~F~~QL~aLr~L~~~--g~rf~pA~~~~f~--~Ed~~k~Lak~Lgeh 212 (228)
T COG5014 170 YFRYQLKALRHLHGK--GHRFWPAVVYDFF--REDGLKELAKRLGEH 212 (228)
T ss_pred HHHHHHHHHHHHHhc--Cceeeehhhhccc--hhhhHHHHHHHhccC
Confidence 44556777777777 8888888888883 333333344444444
No 161
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.75 E-value=0.085 Score=52.48 Aligned_cols=151 Identities=8% Similarity=0.080 Sum_probs=108.3
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
....+.++.++-++.|.+.|+..|.+.+...... .+ ......++++.+.+..
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~-------------~p---------------~~~~~~~~i~~l~~~~ 64 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKA-------------VP---------------QMEDDWEVLRAIRKLV 64 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccc-------------cc---------------cCCCHHHHHHHHHhcc
Confidence 3556999999999999999999998875432211 00 1134667778887765
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
+..++.... +. ..+.++.++++ |...+.+.+-..+.......+|+. ..+...+.++.+++. |+.+..+++
T Consensus 65 ~~~~~~~l~-~~---~~~~i~~a~~~--g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~ 136 (265)
T cd03174 65 PNVKLQALV-RN---REKGIERALEA--GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEA--GLEVEGSLE 136 (265)
T ss_pred CCcEEEEEc-cC---chhhHHHHHhC--CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEE
Confidence 444442221 11 17788889888 999999998544433344445554 678899999999999 999888886
Q ss_pred EcC-CCCCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 418 CGF-CGETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 418 ~G~-PgET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
.-+ |..+.+.+.+.++.+.+++++.+.+.
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 137 DAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred eecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 555 35899999999999999999987753
No 162
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.67 E-value=0.043 Score=49.19 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=66.9
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCC--------------CCCCcEEEEeeccCcchHHHHHHHHHHHHHH
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINV--------------PENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~--------------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~ 142 (524)
.|+.+.+.|.-.--.=...+...|+..||+++ +. .++||+|+|++.. ......+-..++.+
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi-~lg~~~s~e~~v~aa~e~~adii~iSsl~--~~~~~~~~~~~~~L-- 77 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVD-VGPLFQTPEEIARQAVEADVHVVGVSSLA--GGHLTLVPALRKEL-- 77 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEE-ECCCCCCHHHHHHHHHHcCCCEEEEcCch--hhhHHHHHHHHHHH--
Confidence 45777777763333346789999999999863 22 1589999995543 22222233333333
Q ss_pred hhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 143 LKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
+. +..+..+|++||-.+....+++.+ -++|-++.... ++.+.+..+.
T Consensus 78 -~~-----------~g~~~i~vivGG~~~~~~~~~l~~--~Gvd~~~~~gt--~~~~i~~~l~ 124 (132)
T TIGR00640 78 -DK-----------LGRPDILVVVGGVIPPQDFDELKE--MGVAEIFGPGT--PIPESAIFLL 124 (132)
T ss_pred -Hh-----------cCCCCCEEEEeCCCChHhHHHHHH--CCCCEEECCCC--CHHHHHHHHH
Confidence 11 122467899999777655555543 57888888754 6666666553
No 163
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=96.41 E-value=0.006 Score=54.48 Aligned_cols=71 Identities=24% Similarity=0.377 Sum_probs=38.7
Q ss_pred cccCCccCcccccCCCCCcc-ccCChHHHHHHHHH-HHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccc
Q 041524 241 MRGCNNMCSFCIVPFTRGRE-RSRPVESIVKEVDE-LWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSM 318 (524)
Q Consensus 241 sRGC~~~CsFC~vp~~~G~~-Rsr~~e~Iv~Ei~~-l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~ 318 (524)
+.||+.+|.||..+..+... -..-..++++++-. +.+.++..|.|.|.....+
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPll~------------------------- 66 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPLLH------------------------- 66 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGGGH-------------------------
T ss_pred cCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCeeee-------------------------
Confidence 77899999999876554321 11122455555443 4356899999998443331
Q ss_pred hhcccchhhHHHHHHHHHhhCC
Q 041524 319 CKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 319 ~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
.....+.++++.+.+..+
T Consensus 67 ----~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 67 ----ENYDELLEILKYIKEKFP 84 (139)
T ss_dssp ----HSHHHHHHHHHHHHHTT-
T ss_pred ----ccHhHHHHHHHHHHHhCC
Confidence 012458888888888766
No 164
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=96.30 E-value=0.039 Score=49.07 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=56.9
Q ss_pred HHHHHHHHHHCCCeeccCC--------------CCCCcEEEEeeccCcch-HHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 93 MEIVLSIMKNAGYSEVINV--------------PENAEVIFINTCAIRDY-AEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~--------------~~~aDvv~intc~v~~~-a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
-.++...|+.+||++ ++- .++||+|++++..-+.. .-.++.+.+++ +
T Consensus 16 kniv~~~L~~~GfeV-idLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~-----------------~ 77 (128)
T cd02072 16 NKILDHAFTEAGFNV-VNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDE-----------------A 77 (128)
T ss_pred HHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHH-----------------C
Confidence 678889999999986 322 15899999987654432 22233333322 2
Q ss_pred cCCCCEEEEEcccc--c-ccH--HHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 158 SKHPPKIVVLGCMA--E-RLK--DKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 158 ~~p~~~IvvgG~~a--t-~~~--e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
...+.+|++||..+ . ... ++.+.+ -++|.|+++.. ++.+++..+
T Consensus 78 gl~~v~vivGG~~~i~~~d~~~~~~~L~~-~Gv~~vf~pgt--~~~~i~~~l 126 (128)
T cd02072 78 GLKDILLYVGGNLVVGKQDFEDVEKRFKE-MGFDRVFAPGT--PPEEAIADL 126 (128)
T ss_pred CCCCCeEEEECCCCCChhhhHHHHHHHHH-cCCCEEECcCC--CHHHHHHHH
Confidence 22368999999743 2 221 133443 57999999765 677777665
No 165
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.021 Score=55.47 Aligned_cols=57 Identities=23% Similarity=0.411 Sum_probs=42.4
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCC-----ccccCChHHHHHHHHHHHHCCCcEEEEEeccC
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRG-----RERSRPVESIVKEVDELWKEGVKEVTLLGQNV 290 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G-----~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~ 290 (524)
..+..||.+ -|||.+|.+|..+.++. .+...+.++|+++++.+.. +.+.|.|+|.+.
T Consensus 21 Gr~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~-~~~~V~lTGGEP 82 (212)
T COG0602 21 GRPSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGY-KARGVSLTGGEP 82 (212)
T ss_pred cceeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCC-CcceEEEeCCcC
Confidence 345677753 59999999999886653 4677899999999998632 344788988554
No 166
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.74 E-value=0.31 Score=43.93 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=61.5
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccC---C----------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHh
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVIN---V----------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFL 143 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~---~----------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~ 143 (524)
+++-+-+.|.-....=.-.+.-.|+..||+++.- . ..+||+|++++..-. ....+.+.+.++
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~--~~~~~~~~~~~L--- 78 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGH--GEIDCRGLREKC--- 78 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCcccc--CHHHHHHHHHHH---
Confidence 3444444433333333678888999999986311 1 158999999655432 233344444433
Q ss_pred hhhhhhcccccccccCCCCEEEEEccccc--ccHH---HHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 144 KREWKKNVATGRSQSKHPPKIVVLGCMAE--RLKD---KILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 144 ~~~~~~~~~~~~~~~~p~~~IvvgG~~at--~~~e---~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
+ ++..++.+|++||..++ ..++ +.+++. ++|.|+.+.. ++.+.+..+
T Consensus 79 ~-----------~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~-G~~~vf~~~~--~~~~i~~~l 130 (137)
T PRK02261 79 I-----------EAGLGDILLYVGGNLVVGKHDFEEVEKKFKEM-GFDRVFPPGT--DPEEAIDDL 130 (137)
T ss_pred H-----------hcCCCCCeEEEECCCCCCccChHHHHHHHHHc-CCCEEECcCC--CHHHHHHHH
Confidence 1 12235789999997633 2333 233443 5899998544 455555444
No 167
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.51 E-value=0.16 Score=45.60 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=54.8
Q ss_pred HHHHHHHHHHCCCeeccCC--------------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 93 MEIVLSIMKNAGYSEVINV--------------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~--------------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
-.++...|+++||++ ++- .++||+|++++..-+.. ..+.+.++.+ + ++.
T Consensus 18 k~iv~~~l~~~GfeV-i~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~--~~~~~~~~~l---~-----------~~g 80 (134)
T TIGR01501 18 NKILDHAFTNAGFNV-VNLGVLSPQEEFIKAAIETKADAILVSSLYGHGE--IDCKGLRQKC---D-----------EAG 80 (134)
T ss_pred HHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEecccccCH--HHHHHHHHHH---H-----------HCC
Confidence 578899999999986 322 15899999988663332 1222222222 1 122
Q ss_pred CCCCEEEEEcccc--cccHH---HHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 159 KHPPKIVVLGCMA--ERLKD---KILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 159 ~p~~~IvvgG~~a--t~~~e---~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
..+.+|++||..+ ....+ +.+++ -++|.|+++.. .+.++++.+.
T Consensus 81 l~~~~vivGG~~vi~~~d~~~~~~~l~~-~Gv~~vF~pgt--~~~~iv~~l~ 129 (134)
T TIGR01501 81 LEGILLYVGGNLVVGKQDFPDVEKRFKE-MGFDRVFAPGT--PPEVVIADLK 129 (134)
T ss_pred CCCCEEEecCCcCcChhhhHHHHHHHHH-cCCCEEECcCC--CHHHHHHHHH
Confidence 2356788999533 22211 22444 35999998765 5666666553
No 168
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=95.02 E-value=0.085 Score=50.68 Aligned_cols=79 Identities=13% Similarity=0.244 Sum_probs=47.2
Q ss_pred HHHHHHHHHHCCCeecc---CCC----------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 93 MEIVLSIMKNAGYSEVI---NVP----------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~---~~~----------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
...+...|+..||+++. +.+ .+||+|++++ +.+... ..+.+.++.+ ++ +..+
T Consensus 99 ~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~-~~~~~~-~~~~~~i~~l---r~----------~~~~ 163 (201)
T cd02070 99 KNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSA-LMTTTM-GGMKEVIEAL---KE----------AGLR 163 (201)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec-cccccH-HHHHHHHHHH---HH----------CCCC
Confidence 67888999999998631 111 5899999965 223221 2233333333 11 1112
Q ss_pred CCCEEEEEcccccccHHHHHhhCCcceEEEC
Q 041524 160 HPPKIVVLGCMAERLKDKILDADKMVDVVCG 190 (524)
Q Consensus 160 p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ 190 (524)
++++|++||...+. ++.+. -++|+.+.
T Consensus 164 ~~~~i~vGG~~~~~---~~~~~-~GaD~~~~ 190 (201)
T cd02070 164 DKVKVMVGGAPVNQ---EFADE-IGADGYAE 190 (201)
T ss_pred cCCeEEEECCcCCH---HHHHH-cCCcEEEC
Confidence 37899999988774 23333 36887654
No 169
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=95.02 E-value=0.18 Score=46.30 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=30.9
Q ss_pred cccCCccCcccccCCCCCc--cccCC---hHHHHHHHHHHHHCCCcEEEEEeccC
Q 041524 241 MRGCNNMCSFCIVPFTRGR--ERSRP---VESIVKEVDELWKEGVKEVTLLGQNV 290 (524)
Q Consensus 241 sRGC~~~CsFC~vp~~~G~--~Rsr~---~e~Iv~Ei~~l~~~G~kei~l~d~n~ 290 (524)
.-|||.+|.||..|..+.. -...+ +++|++++.... .+..|+|.|...
T Consensus 22 ~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~--~~~gVt~sGGEP 74 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNP--LIDGLTLSGGDP 74 (154)
T ss_pred ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcC--CcCeEEEeChhh
Confidence 3799999999998876431 24566 555555554331 256788887443
No 170
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=94.98 E-value=0.025 Score=55.63 Aligned_cols=186 Identities=13% Similarity=0.108 Sum_probs=120.0
Q ss_pred EEEEEcccCCccCcccccCCCCC---ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 236 AFVSVMRGCNNMCSFCIVPFTRG---RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 236 a~v~isRGC~~~CsFC~vp~~~G---~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
.-++...-|+.+|.||.....+. +-+....++++.-...+..+|+..+.|.+..-....
T Consensus 13 Lrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~------------------ 74 (323)
T KOG2876|consen 13 LRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQ------------------ 74 (323)
T ss_pred hhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccc------------------
Confidence 33566789999999998743321 235567788888777777789988888875544331
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT 392 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t 392 (524)
...++...+....+...+.+++.. .+...++-.+.++ |...+.+.+++....-...+-|..+
T Consensus 75 --------------di~~i~~g~~~l~gLks~~ITtng--~vl~R~lp~lhka--glssiNiSldtl~~aKfa~~~rr~g 136 (323)
T KOG2876|consen 75 --------------DIVPIVAGLSSLPGLKSIGITTNG--LVLARLLPQLHKA--GLSSINISLDTLVRAKFAKLTRRKG 136 (323)
T ss_pred --------------cccchhhhhhcccchhhhceeccc--hhhhhhhhHHHhh--cccchhhhhhhhhHHHHHHHhhhcc
Confidence 122222223222222233344322 1455677778888 9999999999999999998888888
Q ss_pred HHHHHHHHHHHHHh--CCCcEEEEeEEEcCCCCCHHHHHHHHHHHHH--cCCCeEEEEeeecCCCChhcccCCCCCCH
Q 041524 393 REAYLDLVQKIRQI--IPDVGLSSDFICGFCGETEEEHADTLTLMKA--VGYDMAYMFAYSMRERTHAHRNYVDDVPE 466 (524)
Q Consensus 393 ~e~~~~~v~~ir~~--~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~--l~~d~~~i~~~sp~pGT~~~~~~~~~v~~ 466 (524)
...+...++.+.+. .| +.+..-++=|+-|.. ..+|+.. .++-.+.+-.|.|.-|-.... +.-+|.
T Consensus 137 ~v~V~~~iq~a~~lgy~p-vkvn~v~~k~~n~~e------v~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t--~~lIpy 205 (323)
T KOG2876|consen 137 FVKVWASIQLAIELGYNP-VKVNCVVMKGLNEDE------VFDFVLLTRMRPLDVRFIEFMPFDGNKWNT--KSLIPY 205 (323)
T ss_pred HHHHHHHHhHHhhhCCCC-cceeeEEEeccCCCc------ccceeeecCCCCcceEEEEecccCCCcccc--cccccH
Confidence 89999999888865 24 677777887875432 2334332 233336667888888876542 334443
No 171
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=94.92 E-value=0.027 Score=43.15 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=24.4
Q ss_pred cccCCEEEEEEeccCCCCCCCeEEEeCCCCcEEEC
Q 041524 490 SQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRVAF 524 (524)
Q Consensus 490 ~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v~~ 524 (524)
.++|+++.||||+.+. + +.++||+++|..|+|
T Consensus 2 ~~~G~~~~VlVe~~~~--~-g~~~gr~~~~~~V~v 33 (61)
T PF01938_consen 2 SYVGKTLEVLVEELGD--E-GQGIGRTDNGKVVFV 33 (61)
T ss_dssp --TTEEEEEEEEEE-T--T-SEEEEEET-TEEEEE
T ss_pred ccCCcEEEEEEEEecC--C-CEEEEEeCCCeEEEE
Confidence 5799999999999883 2 489999999998875
No 172
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.72 E-value=1.6 Score=43.87 Aligned_cols=142 Identities=8% Similarity=-0.010 Sum_probs=92.5
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-...+.++.++-++.|.+.|++.|.+... .. .....+.++.+....
T Consensus 16 ~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~-------------------------------~~~~~~~~~~l~~~~ 61 (262)
T cd07948 16 NAFFDTEDKIEIAKALDAFGVDYIELTSP---AA-------------------------------SPQSRADCEAIAKLG 61 (262)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEECC---CC-------------------------------CHHHHHHHHHHHhCC
Confidence 36789999999999999999999987631 11 012333334443322
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh-hhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeE
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE-RMRRG--YTREAYLDLVQKIRQIIPDVGLSSDF 416 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~-~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~f 416 (524)
....+ ....+ .+.+-++...++ |+..|++-+ +.|+..++ .+++. ...+.+.+.++.+++. |+.+..++
T Consensus 62 ~~~~v-~~~~r---~~~~di~~a~~~--g~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~--G~~v~~~~ 132 (262)
T cd07948 62 LKAKI-LTHIR---CHMDDARIAVET--GVDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSK--GIEVRFSS 132 (262)
T ss_pred CCCcE-EEEec---CCHHHHHHHHHc--CcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 22222 11122 245567777787 999988877 45555444 34443 2355677777899998 88888888
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 417 ICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 417 I~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.-.| +-+.+.+.+.++.+.+.+++.+.+
T Consensus 133 eda~-r~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 133 EDSF-RSDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred EeeC-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 7666 335788888888888888886543
No 173
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=94.40 E-value=0.29 Score=45.02 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=14.0
Q ss_pred ccCCccCcccccCCCC
Q 041524 242 RGCNNMCSFCIVPFTR 257 (524)
Q Consensus 242 RGC~~~CsFC~vp~~~ 257 (524)
-|||.+|.||..+.++
T Consensus 24 ~GCnl~C~~C~n~~~~ 39 (154)
T PRK11121 24 SGCVHQCPGCYNKSTW 39 (154)
T ss_pred CCCCCcCcCCCChhhc
Confidence 8999999999887654
No 174
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=94.00 E-value=2.7 Score=43.93 Aligned_cols=147 Identities=12% Similarity=0.064 Sum_probs=94.5
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-...+.++-++-++.|.+.|++.|.... |.+. . | . +......++++.+....
T Consensus 62 g~~~s~e~Ki~ia~~L~~~GV~~IEvGs--~vsp------------k--~--v----------Pqmad~~ev~~~i~~~~ 113 (347)
T PLN02746 62 KNIVPTSVKVELIQRLVSSGLPVVEATS--FVSP------------K--W--V----------PQLADAKDVMAAVRNLE 113 (347)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECC--CcCc------------c--c--c----------cccccHHHHHHHHHhcc
Confidence 4678999999999999999999987652 2111 0 0 0 00123445566665432
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh-hCCC--CCHHHHHHHHHHHHHhCCCcEEEEeE
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER-MRRG--YTREAYLDLVQKIRQIIPDVGLSSDF 416 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~-m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~f 416 (524)
..++.. ..+ +.+-++...++ |+..+++.+ |.|+..+++ +++. ...+.+.+.++.+++. |+.+..++
T Consensus 114 -~~~~~~--l~~---n~~die~A~~~--g~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~--Gl~v~~~i 182 (347)
T PLN02746 114 -GARFPV--LTP---NLKGFEAAIAA--GAKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKH--SIPVRGYV 182 (347)
T ss_pred -CCceeE--EcC---CHHHHHHHHHc--CcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 223222 112 56677777788 999999999 777766554 4443 2345566788899998 88887666
Q ss_pred --EEcCCCCC---HHHHHHHHHHHHHcCCCeEEE
Q 041524 417 --ICGFCGET---EEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 417 --I~G~PgET---~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+|.|.++ .+.+.+.++.+.+.+.+.+.+
T Consensus 183 s~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l 216 (347)
T PLN02746 183 SCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISL 216 (347)
T ss_pred EeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 57878774 455566666666778887654
No 175
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=93.56 E-value=1.1 Score=40.43 Aligned_cols=108 Identities=16% Similarity=0.236 Sum_probs=65.0
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCC--------------CCCCcEEEEeeccCcchHHHHHHHHHHHHH
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINV--------------PENAEVIFINTCAIRDYAEHKVWQRLNYFW 141 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~--------------~~~aDvv~intc~v~~~a~~~~~~~l~~~~ 141 (524)
+.||.+.++|=----.=...++..|++.||+++ .. .+++|+|++++- .......+-..+..+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi-~~g~~~tp~e~v~aA~~~dv~vIgvSsl--~g~h~~l~~~lve~l- 87 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVI-NLGLFQTPEEAVRAAVEEDVDVIGVSSL--DGGHLTLVPGLVEAL- 87 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEE-ecCCcCCHHHHHHHHHhcCCCEEEEEec--cchHHHHHHHHHHHH-
Confidence 446888888711111225688999999999863 21 168999999443 333333333333322
Q ss_pred HhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 142 FLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
+ ++...++.|++||..+.-...++.+ -.+|-|+.+. ..+.+.++.+
T Consensus 88 --r-----------e~G~~~i~v~~GGvip~~d~~~l~~--~G~~~if~pg--t~~~~~~~~v 133 (143)
T COG2185 88 --R-----------EAGVEDILVVVGGVIPPGDYQELKE--MGVDRIFGPG--TPIEEALSDL 133 (143)
T ss_pred --H-----------HhCCcceEEeecCccCchhHHHHHH--hCcceeeCCC--CCHHHHHHHH
Confidence 1 1233456678999888876556654 4689999873 4555555443
No 176
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.35 E-value=4.3 Score=41.25 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=94.6
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-...+.++.++-++.|.+.|++.|.+. .|..- . | ++ ....-.+.+..+.+.
T Consensus 20 ~~~~s~e~k~~ia~~L~~~Gv~~IEvg--sf~~p------------~--~-----~p-------~~~d~~e~~~~l~~~- 70 (287)
T PRK05692 20 KRFIPTADKIALIDRLSAAGLSYIEVA--SFVSP------------K--W-----VP-------QMADAAEVMAGIQRR- 70 (287)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeC--CCcCc------------c--c-----cc-------ccccHHHHHHhhhcc-
Confidence 457889999999999999999998865 22110 0 0 00 001124556666542
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
+..++... .+ +.+-++...++ |...+++.+-..+....+.+++.. ..+.+.+.++.+++. |+.+...+.
T Consensus 71 ~~~~~~~l--~~---~~~~ie~A~~~--g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~--g~~v~~~i~ 141 (287)
T PRK05692 71 PGVTYAAL--TP---NLKGLEAALAA--GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQA--GVRVRGYVS 141 (287)
T ss_pred CCCeEEEE--ec---CHHHHHHHHHc--CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEE
Confidence 23343322 22 45556666677 999998886443333444555542 355688899999999 888776666
Q ss_pred E--cCCCC---CHHHHHHHHHHHHHcCCCeEEE
Q 041524 418 C--GFCGE---TEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 418 ~--G~PgE---T~ed~~~tl~~l~~l~~d~~~i 445 (524)
. |-|.+ +++.+.+.++.+.+.+.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 174 (287)
T PRK05692 142 CVLGCPYEGEVPPEAVADVAERLFALGCYEISL 174 (287)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 4 55766 6778888888888889887654
No 177
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=93.30 E-value=0.54 Score=41.29 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=49.4
Q ss_pred HHHHHHHHHHCCCeeccCC-------------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 93 MEIVLSIMKNAGYSEVINV-------------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~-------------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
.-.+...|+..||+++..- ..+||+|+|++. .......+.+.++++ ++ +..
T Consensus 16 ~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~--~~~~~~~~~~~~~~L---~~-----------~~~ 79 (122)
T cd02071 16 AKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSL--SGGHMTLFPEVIELL---RE-----------LGA 79 (122)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccc--chhhHHHHHHHHHHH---Hh-----------cCC
Confidence 6677888999999863111 148999999433 233333344444443 11 222
Q ss_pred CCCEEEEEcccccccHHHHHhhCCcceEEECCC
Q 041524 160 HPPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192 (524)
Q Consensus 160 p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ge 192 (524)
+.++|++||-.+....+++.+ -++|.++.+.
T Consensus 80 ~~i~i~~GG~~~~~~~~~~~~--~G~d~~~~~~ 110 (122)
T cd02071 80 GDILVVGGGIIPPEDYELLKE--MGVAEIFGPG 110 (122)
T ss_pred CCCEEEEECCCCHHHHHHHHH--CCCCEEECCC
Confidence 478899999765443344443 4699888764
No 178
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=92.99 E-value=6.3 Score=39.70 Aligned_cols=147 Identities=15% Similarity=0.029 Sum_probs=89.8
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC-
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF- 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~- 339 (524)
...+.++.++-++.|.+.|++.|.+.-.. .. ..-.+.++.+.+..
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~--~~--------------------------------~~~~~~~~~~~~~~~ 60 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWPG--SN--------------------------------PKDTEFFARAKKLKL 60 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCc--CC--------------------------------HHHHHHHHHHHHcCC
Confidence 56789999999999999999999873211 01 01223334443322
Q ss_pred CceEEE-EecCCCCC---CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEE
Q 041524 340 PEMRFR-YTSPHPKD---FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLS 413 (524)
Q Consensus 340 ~~~~ir-~~s~~p~~---~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~ 413 (524)
+...+. +.-.+..+ .++..++.+.+. |+..+++.+=+.+....+.+++. ...+.+.+.++.+++. |..+.
T Consensus 61 ~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~--g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~ 136 (273)
T cd07941 61 KHAKLAAFGSTRRAGVKAEEDPNLQALLEA--GTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSH--GREVI 136 (273)
T ss_pred CCcEEEEEecccccCCCccchHHHHHHHhC--CCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEE
Confidence 122221 11112222 234567888887 99998886654444455566665 4577888899999999 88777
Q ss_pred EeEEEcCC--CCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 414 SDFICGFC--GETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 414 ~~fI~G~P--gET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+.+.-+. ..+.+.+.+.++.+.+.+.+.+.+
T Consensus 137 ~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l 170 (273)
T cd07941 137 FDAEHFFDGYKANPEYALATLKAAAEAGADWLVL 170 (273)
T ss_pred EeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 65332222 235666677777778888886543
No 179
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=92.78 E-value=6 Score=39.92 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=94.2
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
..+.+.++-++-++.|.+.|+++|.+.. |.+. .. + +......+++..+....
T Consensus 14 ~~~~s~e~K~~i~~~L~~~Gv~~IEvGs--~~~~------------~~-------~-------p~~~d~~~~~~~l~~~~ 65 (274)
T cd07938 14 KTFIPTEDKIELIDALSAAGLRRIEVTS--FVSP------------KW-------V-------PQMADAEEVLAGLPRRP 65 (274)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCC--CCCc------------cc-------c-------cccCCHHHHHhhcccCC
Confidence 4678999999999999999999998752 2211 00 0 00012334555554422
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
..++ ....+ +.+-++...+. |...+++.+-+.+....+.+++. ...+...+.++.+++. |..+...+.
T Consensus 66 -~~~~--~~~~~---~~~dv~~A~~~--g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~--G~~v~~~i~ 135 (274)
T cd07938 66 -GVRY--SALVP---NLRGAERALAA--GVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAA--GLRVRGYVS 135 (274)
T ss_pred -CCEE--EEECC---CHHHHHHHHHc--CcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEE
Confidence 2333 22222 34456666677 89999888766555555666765 3467788889999999 887766665
Q ss_pred --EcCCCC---CHHHHHHHHHHHHHcCCCeEEE
Q 041524 418 --CGFCGE---TEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 418 --~G~PgE---T~ed~~~tl~~l~~l~~d~~~i 445 (524)
+|.|.+ +.+.+.+.++.+.+.+.+.+.+
T Consensus 136 ~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (274)
T cd07938 136 TAFGCPYEGEVPPERVAEVAERLLDLGCDEISL 168 (274)
T ss_pred eEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 555655 5566667777777788886654
No 180
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.59 E-value=9.1 Score=38.44 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=92.1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCC-CCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVN-SYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~-~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.+.+.++.++-++.|.+.|+..|.+.-.... .+. .|. + .++ . .+.++++....
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~----------~~~-~----~~~----------~-~~~~~~i~~~~ 68 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEF----------KGK-S----AFC----------D-DEFLRRLLGDS 68 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCcccc----------CCC-c----cCC----------C-HHHHHHHHhhh
Confidence 4578899998889998899998876421110 000 010 0 000 0 22333333322
Q ss_pred -CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 340 -PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 340 -~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
+..++... .++...+.+.++...+. |...+++.+. ....+...+.++.+++. |..+...++.
T Consensus 69 ~~~~~~~~~-~~~~~~~~~~l~~a~~~--gv~~iri~~~------------~~~~~~~~~~i~~ak~~--G~~v~~~~~~ 131 (266)
T cd07944 69 KGNTKIAVM-VDYGNDDIDLLEPASGS--VVDMIRVAFH------------KHEFDEALPLIKAIKEK--GYEVFFNLMA 131 (266)
T ss_pred ccCCEEEEE-ECCCCCCHHHHHHHhcC--CcCEEEEecc------------cccHHHHHHHHHHHHHC--CCeEEEEEEe
Confidence 23344332 34544566777777777 8888888752 23689999999999999 8888888777
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+ +-+.+.+.+.++.+.+.+++.+.+
T Consensus 132 a~-~~~~~~~~~~~~~~~~~g~~~i~l 157 (266)
T cd07944 132 IS-GYSDEELLELLELVNEIKPDVFYI 157 (266)
T ss_pred ec-CCCHHHHHHHHHHHHhCCCCEEEE
Confidence 66 468899999999999999887654
No 181
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=92.44 E-value=0.57 Score=47.01 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=40.0
Q ss_pred CCCCEEEEEccccccc------------HHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCC
Q 041524 159 KHPPKIVVLGCMAERL------------KDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQK 209 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~------------~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~ 209 (524)
.++++||+||..||+- ...+|- ...+|+++-|-||.++.++.+.+.+|..
T Consensus 124 f~~vPiiiGGIEASLRR~aHYDyWsdkvRrSIL~-DskADlLvYGMGE~~i~eiA~~L~~G~~ 185 (302)
T PF08497_consen 124 FKDVPIIIGGIEASLRRFAHYDYWSDKVRRSILF-DSKADLLVYGMGEKPILEIARRLAAGEP 185 (302)
T ss_pred CCCCCEEEecccccceehhhhhhhccccccceee-cCCCCEEEecccHHHHHHHHHHHHcCCC
Confidence 5788999999999872 112332 3569999999999999999999998864
No 182
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.15 E-value=7.9 Score=38.59 Aligned_cols=141 Identities=10% Similarity=0.018 Sum_probs=90.2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++-++.|.+.|++.|.+. +... + ..-.+.++.+.+..+
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g---~p~~------------~-------------------~~~~e~~~~l~~~~~ 60 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVG---IPAM------------G-------------------EEEREAIRAIVALGL 60 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---cCCC------------C-------------------HHHHHHHHHHHhcCC
Confidence 46789999999999999999998874 1111 1 112245566655333
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH-HHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA-VLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~-vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
...+... .+ .+.+-++...+. |+..+.+.+ |.|+. ..+.+++. ...+.+.+.++.+++. |+.+...++
T Consensus 61 ~~~~~~~-~r---~~~~~v~~a~~~--g~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~ 131 (259)
T cd07939 61 PARLIVW-CR---AVKEDIEAALRC--GVTAVHISI-PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR--GLFVSVGAE 131 (259)
T ss_pred CCEEEEe-cc---CCHHHHHHHHhC--CcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEeec
Confidence 3332211 11 245567777777 899999888 44444 44566653 2345667888899998 877665444
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+. .-+.+.+.+.++.+.+.+.+.+.+
T Consensus 132 ~~~-~~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 132 DAS-RADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred cCC-CCCHHHHHHHHHHHHHCCCCEEEe
Confidence 332 235778888888888888887544
No 183
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.32 E-value=10 Score=40.20 Aligned_cols=142 Identities=8% Similarity=-0.038 Sum_probs=91.6
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++-++.|.+.|++.|.+. +... + ..-.+.++.+.+...
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G---~p~~------------~-------------------~~~~e~i~~i~~~~~ 66 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG---FPAV------------S-------------------EDEKEAIKAIAKLGL 66 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEe---CCCc------------C-------------------hHHHHHHHHHHhcCC
Confidence 56889999999999999999998864 2111 1 112344555554332
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
..++ .... ....+-++...++ |...+++.+-+.+..+...+++. ...+.+.+.++.+++. |..+..++.-
T Consensus 67 ~~~i--~~~~--r~~~~di~~a~~~--g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~--G~~v~~~~ed 138 (378)
T PRK11858 67 NASI--LALN--RAVKSDIDASIDC--GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDH--GLYVSFSAED 138 (378)
T ss_pred CeEE--EEEc--ccCHHHHHHHHhC--CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEecc
Confidence 2232 2111 1235567777777 99999998865555555566653 2345666688888888 8777666544
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+. --+.+.+.+.++.+.+.+.+.+.+
T Consensus 139 ~~-r~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 139 AS-RTDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred CC-CCCHHHHHHHHHHHHhCCCCEEEE
Confidence 43 346777778888888888887654
No 184
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=91.24 E-value=2.8 Score=48.07 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=64.9
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCC-------------CCCcEEEEeeccCcchHHHHHHHHHHHHHH
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVP-------------ENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~-------------~~aDvv~intc~v~~~a~~~~~~~l~~~~~ 142 (524)
..+|++.++|.-.--.-...+...|+..||++..... ++||+|+|++. .......+-..++.+
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvlcs~--d~~~~e~~~~l~~~L-- 657 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSSL--AAGHKTLVPALIEAL-- 657 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEEecc--chhhHHHHHHHHHHH--
Confidence 4579999999864444456788899999998632211 58999999443 322222233333333
Q ss_pred hhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 143 LKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
| .+..++++|++||..+.-..+.+ +. -++|.++.... +..+.|..+
T Consensus 658 -k-----------~~G~~~v~vl~GG~~~~~~~~~l-~~-aGvD~~i~~g~--d~~~~L~~l 703 (714)
T PRK09426 658 -K-----------KLGREDIMVVVGGVIPPQDYDFL-YE-AGVAAIFGPGT--VIADAAIDL 703 (714)
T ss_pred -H-----------hcCCCCcEEEEeCCCChhhHHHH-Hh-CCCCEEECCCC--CHHHHHHHH
Confidence 1 12234678999997544333344 33 47887776543 455555544
No 185
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=91.14 E-value=8.6 Score=38.79 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=91.5
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEecc-CCC-CCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQN-VNS-YNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n-~~~-y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
..+.++.++-+..|.+.|+..|.+.... |.+ + + + ....-.+.++.+.+..
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~------------~--------~--------~~~~~~e~i~~~~~~~ 68 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCM------------R--------F--------LNEDPWERLRELRKAM 68 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhc------------c--------c--------cCCCHHHHHHHHHHhC
Confidence 5677888888899999999988876422 110 0 0 0 0011233444444433
Q ss_pred CceE----EEE----e-cCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCc
Q 041524 340 PEMR----FRY----T-SPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDV 410 (524)
Q Consensus 340 ~~~~----ir~----~-s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi 410 (524)
+... .|- . .++|..+.++.++...++ |...+++..-. |+ .+...+.++.+++. |.
T Consensus 69 ~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~--g~~~iri~~~~-~~-----------~~~~~~~i~~ak~~--G~ 132 (275)
T cd07937 69 PNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKN--GIDIFRIFDAL-ND-----------VRNLEVAIKAVKKA--GK 132 (275)
T ss_pred CCCceehhcccccccCccCCCcHHHHHHHHHHHHc--CCCEEEEeecC-Ch-----------HHHHHHHHHHHHHC--CC
Confidence 3222 221 0 146666778888888887 88888886533 22 67899999999999 87
Q ss_pred EEEEeEEEcC-CCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 411 GLSSDFICGF-CGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 411 ~i~~~fI~G~-PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+...+.+-+ +.-+++.+.+.++.+.+.+.+.+.+
T Consensus 133 ~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (275)
T cd07937 133 HVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICI 168 (275)
T ss_pred eEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 7766554322 5568889999999999999987755
No 186
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=90.72 E-value=18 Score=35.55 Aligned_cols=133 Identities=6% Similarity=-0.001 Sum_probs=84.0
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEE--EEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVT--LLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~--l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
-+.+.-.+.+|++.+.+.|++.+. +.|.+|--. +.+ +. .+++.+.+
T Consensus 20 l~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itf-------------Gp---~~i~~i~~- 67 (228)
T PRK08091 20 LASNWLKFNETLTTLSENQLRLLHFDIADGQFSPF---------------FTV-------------GA---IAIKQFPT- 67 (228)
T ss_pred hhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---------------ccc-------------CH---HHHHHhCC-
Confidence 345677899999999999988765 455554321 000 11 23333322
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 339 FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 339 ~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
.-.+.+.+...+ +++.++.+.++ |+..+.+-+|+. ....+.++.+|+. |+.+.+.+.+
T Consensus 68 ~~~~DvHLMv~~----P~~~i~~~~~a--Gad~It~H~Ea~--------------~~~~~~l~~Ik~~--g~~~kaGlal 125 (228)
T PRK08091 68 HCFKDVHLMVRD----QFEVAKACVAA--GADIVTLQVEQT--------------HDLALTIEWLAKQ--KTTVLIGLCL 125 (228)
T ss_pred CCCEEEEeccCC----HHHHHHHHHHh--CCCEEEEcccCc--------------ccHHHHHHHHHHC--CCCceEEEEE
Confidence 112344443333 57799999999 999999999973 2356788899999 8755666666
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
. |+-..++++..++. +|.+- .++..||-.
T Consensus 126 n-P~Tp~~~i~~~l~~-----vD~VL--iMtV~PGfg 154 (228)
T PRK08091 126 C-PETPISLLEPYLDQ-----IDLIQ--ILTLDPRTG 154 (228)
T ss_pred C-CCCCHHHHHHHHhh-----cCEEE--EEEECCCCC
Confidence 6 67666776555443 46544 456677754
No 187
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=90.62 E-value=18 Score=37.59 Aligned_cols=143 Identities=12% Similarity=0.146 Sum_probs=92.6
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEE-eccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLL-GQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~-d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
...+.+++++-++.|.+.|+..|.+. ++.+... . +.-|++. ..-.+.++.+.+..
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~--------------s--~~~g~~~--------~~~~e~i~~~~~~~ 75 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGS--------------S--FNYGFGA--------HTDEEYIEAAAEVV 75 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCc--------------c--ccCCCCC--------CCHHHHHHHHHHhC
Confidence 45788999999999999999988775 2222100 0 0001110 01234555554433
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG 419 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G 419 (524)
+..++... ..|..-+.+-++...+. |...+.+..- .+ ..+...+.++.+|+. |..+...++..
T Consensus 76 ~~~~~~~l-l~pg~~~~~dl~~a~~~--gvd~iri~~~-~~-----------e~~~~~~~i~~ak~~--G~~v~~~l~~a 138 (337)
T PRK08195 76 KQAKIAAL-LLPGIGTVDDLKMAYDA--GVRVVRVATH-CT-----------EADVSEQHIGLAREL--GMDTVGFLMMS 138 (337)
T ss_pred CCCEEEEE-eccCcccHHHHHHHHHc--CCCEEEEEEe-cc-----------hHHHHHHHHHHHHHC--CCeEEEEEEec
Confidence 43444322 23444455667777777 8998887751 11 235688999999999 88888888776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 420 FCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 420 ~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+.-+++.+.+.++.+.+.+++.+++
T Consensus 139 -~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 139 -HMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred -cCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 4568899999999999999987654
No 188
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.30 E-value=20 Score=37.22 Aligned_cols=143 Identities=13% Similarity=0.168 Sum_probs=91.4
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEE-eccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLL-GQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~-d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
...+.+++++-++.|.+.|+..|.+. ++.+.. .. +.-||+. ...+ +.++++.+..
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g--------------~s--~~~G~~~-------~~~~-e~i~~~~~~~ 74 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGG--------------SS--FNYGFSA-------HTDL-EYIEAAADVV 74 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--------------cc--ccCCCCC-------CChH-HHHHHHHHhC
Confidence 45788999999999999999988875 222210 00 0001110 0111 3333443333
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG 419 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G 419 (524)
+..++... ..|..-+.+-++...++ |...+.+..- . ...+...+.++.+++. |..+...++..
T Consensus 75 ~~~~~~~l-l~pg~~~~~dl~~a~~~--gvd~iri~~~-~-----------~e~d~~~~~i~~ak~~--G~~v~~~l~~s 137 (333)
T TIGR03217 75 KRAKVAVL-LLPGIGTVHDLKAAYDA--GARTVRVATH-C-----------TEADVSEQHIGMAREL--GMDTVGFLMMS 137 (333)
T ss_pred CCCEEEEE-eccCccCHHHHHHHHHC--CCCEEEEEec-c-----------chHHHHHHHHHHHHHc--CCeEEEEEEcc
Confidence 33333321 34444456677888777 8998888762 1 1235678999999999 88888888877
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 420 FCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 420 ~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+ .-+++.+.+.++.+.+.+.+.+++
T Consensus 138 ~-~~~~e~l~~~a~~~~~~Ga~~i~i 162 (333)
T TIGR03217 138 H-MTPPEKLAEQAKLMESYGADCVYI 162 (333)
T ss_pred c-CCCHHHHHHHHHHHHhcCCCEEEE
Confidence 5 568899999999999999887654
No 189
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.30 E-value=15 Score=38.54 Aligned_cols=143 Identities=12% Similarity=-0.040 Sum_probs=95.0
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++-++.|.+.|++.|.+.- ... + ..-.+.++.+.+...
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~------------~-------------------~~~~e~i~~i~~~~~ 62 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGF---PIA------------S-------------------EGEFEAIKKISQEGL 62 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCC------------C-------------------hHHHHHHHHHHhcCC
Confidence 568899999999999999999988631 111 0 112344555554433
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
...+... .+ ...+-++...++ |+..+++-+-+.+......+++.. ..+.+.+.++.+++. |..+...+.-
T Consensus 63 ~~~v~~~-~r---~~~~di~~a~~~--g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~ed 134 (363)
T TIGR02090 63 NAEICSL-AR---ALKKDIDKAIDC--GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH--GLIVEFSAED 134 (363)
T ss_pred CcEEEEE-cc---cCHHHHHHHHHc--CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEee
Confidence 3333211 12 245668888888 998888866444444444566542 467788899999999 8888777765
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
+. .-+.+.+.+.++.+.+.+.+.+.+.
T Consensus 135 a~-r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 135 AT-RTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred cC-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 53 4568888888888888898876653
No 190
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.53 E-value=11 Score=39.77 Aligned_cols=141 Identities=11% Similarity=-0.002 Sum_probs=89.2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++-++.|.+.|++.|.+. +... + ..-.+.++.+.+..+
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG---~p~~------------~-------------------~~~~e~i~~i~~~~~ 63 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVG---IPAM------------G-------------------EEERAVIRAIVALGL 63 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCC------------C-------------------HHHHHHHHHHHHcCC
Confidence 56889999999999999999998874 2111 0 112344555555433
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHH-HhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAV-LERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~v-L~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
..++..- .+ ...+-++...++ |...+++.+ +.|+.- ...+++.. ..+.+.++++.+++. |..+..++.
T Consensus 64 ~~~i~~~-~r---~~~~di~~a~~~--g~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~e 134 (365)
T TIGR02660 64 PARLMAW-CR---ARDADIEAAARC--GVDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGE 134 (365)
T ss_pred CcEEEEE-cC---CCHHHHHHHHcC--CcCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeec
Confidence 3333111 22 246778888888 898888887 455544 44565532 345566888888888 877665544
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
-+ +.-+.+.+.+.++.+.+.+.+.+.+
T Consensus 135 d~-~r~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 135 DA-SRADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred CC-CCCCHHHHHHHHHHHHHcCcCEEEE
Confidence 33 2335677777777777888886543
No 191
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.84 E-value=2.6 Score=41.22 Aligned_cols=145 Identities=10% Similarity=0.067 Sum_probs=85.1
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE 341 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 341 (524)
..+.++.++-++.|.+.|+..|.+. +... +. .....+.++.+.+..
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg---~~~~------------~~---------------~~~~~v~~~~~~~~~---- 55 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVG---FPFA------------SE---------------DDFEQVRRLREALPN---- 55 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEE---HCTS------------SH---------------HHHHHHHHHHHHHHS----
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEc---cccc------------CH---------------HHHHHhhhhhhhhcc----
Confidence 4788888888899989999998876 1111 00 001223334443333
Q ss_pred eEE-EEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 342 MRF-RYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 342 ~~i-r~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
..+ .+...... .-+..++.++.. |...+.+.+-..+......+++. ...+.+.++++.+++. |..+...++-
T Consensus 56 ~~~~~~~~~~~~-~i~~~~~~~~~~--g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~--g~~v~~~~~~ 130 (237)
T PF00682_consen 56 ARLQALCRANEE-DIERAVEAAKEA--GIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKEL--GYEVAFGCED 130 (237)
T ss_dssp SEEEEEEESCHH-HHHHHHHHHHHT--TSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT--TSEEEEEETT
T ss_pred cccceeeeehHH-HHHHHHHhhHhc--cCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc--CCceEeCccc
Confidence 222 12212111 112224445566 89998887655444555556553 2367778888999998 8877555443
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
.. .-+++.+.+..+.+.+++++.+.+-
T Consensus 131 ~~-~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 131 AS-RTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp TG-GSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred cc-cccHHHHHHHHHHHHHcCCeEEEee
Confidence 33 3478888899999999999977653
No 192
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=88.73 E-value=15 Score=37.30 Aligned_cols=86 Identities=6% Similarity=0.047 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEEE-cCC-CCCHHHHHHH
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDFIC-GFC-GETEEEHADT 431 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~fI~-G~P-gET~ed~~~t 431 (524)
..-++...++ |+..+++.+=+.+....+.+++. ...+.+.+.++.+++. |+.+..++.- |-| --+++.+.+.
T Consensus 77 ~~~~~~A~~~--g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~--G~~v~~~~~d~~~~~r~~~~~~~~~ 152 (280)
T cd07945 77 DKSVDWIKSA--GAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKN--GIEVNIYLEDWSNGMRDSPDYVFQL 152 (280)
T ss_pred HHHHHHHHHC--CCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC--CCEEEEEEEeCCCCCcCCHHHHHHH
Confidence 3457777777 99999999855444555566664 3456778888888888 8887777664 222 3467888888
Q ss_pred HHHHHHcCCCeEEE
Q 041524 432 LTLMKAVGYDMAYM 445 (524)
Q Consensus 432 l~~l~~l~~d~~~i 445 (524)
++.+.+.+.+.+.+
T Consensus 153 ~~~~~~~G~~~i~l 166 (280)
T cd07945 153 VDFLSDLPIKRIML 166 (280)
T ss_pred HHHHHHcCCCEEEe
Confidence 88888889887654
No 193
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=88.48 E-value=29 Score=34.74 Aligned_cols=141 Identities=9% Similarity=0.000 Sum_probs=88.9
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++-++.|.+.|+..|.+.. ... + +..+ +.++.+.+..+
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~---~~~------------~------------------~~~~-~~~~~l~~~~~ 60 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVDVIEAGF---PAA------------S------------------PGDF-EAVKRIAREVL 60 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCC------------C------------------HHHH-HHHHHHHHhCC
Confidence 467899999999999999999988742 110 0 1122 45555655444
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCC----cceeecCcCCcCHHH-HhhhCCCC--CHHHHHHHHHHHHHhCCCcEEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNV----CKYIHLPAQTGNSAV-LERMRRGY--TREAYLDLVQKIRQIIPDVGLS 413 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G----~~~i~igiESgs~~v-L~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~ 413 (524)
...+... .++ ..+.++...++ | ...+.+-+ |.|+.- .+.+++.. ..+.+.+.++.+++. |+.+.
T Consensus 61 ~~~~~~l-~r~---~~~~v~~a~~~--~~~~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~ 131 (268)
T cd07940 61 NAEICGL-ARA---VKKDIDAAAEA--LKPAKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSH--GLDVE 131 (268)
T ss_pred CCEEEEE-ccC---CHhhHHHHHHh--CCCCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEE
Confidence 4444322 222 24455665555 5 77777766 455554 44556543 357778889999998 87766
Q ss_pred EeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 414 SDFICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 414 ~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
..++.+. .-+++.+.+.++.+.+++++.+.+
T Consensus 132 ~~~~~~~-~~~~~~~~~~~~~~~~~G~~~i~l 162 (268)
T cd07940 132 FSAEDAT-RTDLDFLIEVVEAAIEAGATTINI 162 (268)
T ss_pred EeeecCC-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4444332 246788888888888888887654
No 194
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=87.81 E-value=31 Score=34.37 Aligned_cols=141 Identities=15% Similarity=0.177 Sum_probs=89.9
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEecc-CC--CCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHh
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQN-VN--SYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSL 337 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n-~~--~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~ 337 (524)
...+.++.++-++.|.+.|+..|.+...+ +. ++ .+ +++ ...-.+.++.+.+
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~--------------~~----~~~--------~~~~~e~i~~~~~ 70 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSL--------------NY----GFA--------AHTDEEYLEAAAE 70 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccc--------------cc----CCC--------CCChHHHHHHHHH
Confidence 46788999999999999999988775211 00 00 00 000 0112344555544
Q ss_pred hCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 338 EFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 338 ~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
..+..++... .++.....+-++...++ |+..+.+.. +.|+ .....+.++.+++. |..+...++
T Consensus 71 ~~~~~~~~~~-~~~~~~~~~~i~~a~~~--g~~~iri~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~ 133 (263)
T cd07943 71 ALKQAKLGVL-LLPGIGTVDDLKMAADL--GVDVVRVAT-HCTE-----------ADVSEQHIGAARKL--GMDVVGFLM 133 (263)
T ss_pred hccCCEEEEE-ecCCccCHHHHHHHHHc--CCCEEEEEe-chhh-----------HHHHHHHHHHHHHC--CCeEEEEEE
Confidence 4344444322 12333345667777777 899888755 3332 24678899999999 888888886
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
-.. .-+++.+.+.++.+.+.+.+.+.+
T Consensus 134 ~~~-~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 134 MSH-MASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred ecc-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 665 357888888899999999887653
No 195
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=87.38 E-value=20 Score=33.82 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=78.9
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..+++++++-++.+.+.|++-|.+.-.+ ....+.++.+.+..
T Consensus 10 ~r~~~~~~~~~~~~~l~~~G~~~vev~~~~------------------------------------~~~~~~i~~l~~~~ 53 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLRT------------------------------------PGALEAIRALRKEF 53 (190)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC------------------------------------hhHHHHHHHHHHHC
Confidence 356679999999999999999988775321 01344666666665
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG 419 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G 419 (524)
+...+...+ .++.+-++...++ |..+++.|-.. .+.++.+++. ++ .+|.|
T Consensus 54 ~~~~iGag~----v~~~~~~~~a~~~--Ga~~i~~p~~~------------------~~~~~~~~~~--~~----~~i~g 103 (190)
T cd00452 54 PEALIGAGT----VLTPEQADAAIAA--GAQFIVSPGLD------------------PEVVKAANRA--GI----PLLPG 103 (190)
T ss_pred CCCEEEEEe----CCCHHHHHHHHHc--CCCEEEcCCCC------------------HHHHHHHHHc--CC----cEECC
Confidence 554444433 2457778888888 99999976321 2355555555 44 35667
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 041524 420 FCGETEEEHADTLTLMKAVGYDMAYMFAYSMR 451 (524)
Q Consensus 420 ~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~ 451 (524)
.- |.++..+. .+.+.|++.+|+.++.
T Consensus 104 v~--t~~e~~~A----~~~Gad~i~~~p~~~~ 129 (190)
T cd00452 104 VA--TPTEIMQA----LELGADIVKLFPAEAV 129 (190)
T ss_pred cC--CHHHHHHH----HHCCCCEEEEcCCccc
Confidence 64 77776554 3578999998765443
No 196
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=87.13 E-value=1.7 Score=41.54 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCeecc---CC----------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 93 MEIVLSIMKNAGYSEVI---NV----------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~---~~----------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
...+...|+.+||+++. +- ..+||+|+++ ++.+.... .+.+.++.+ ++ +-..
T Consensus 101 ~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS-~~~~~~~~-~~~~~i~~l---~~----------~~~~ 165 (197)
T TIGR02370 101 KNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGS-ALMTTTMY-GQKDINDKL---KE----------EGYR 165 (197)
T ss_pred HHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc-cccccCHH-HHHHHHHHH---HH----------cCCC
Confidence 67788899999998631 11 1589999995 44444333 244444443 11 1123
Q ss_pred CCCEEEEEcccccccHHHHHhhCCcceEEE
Q 041524 160 HPPKIVVLGCMAERLKDKILDADKMVDVVC 189 (524)
Q Consensus 160 p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv 189 (524)
++++|++||...+ + ++.+. -++|...
T Consensus 166 ~~v~i~vGG~~~~--~-~~~~~-~gad~~~ 191 (197)
T TIGR02370 166 DSVKFMVGGAPVT--Q-DWADK-IGADVYG 191 (197)
T ss_pred CCCEEEEEChhcC--H-HHHHH-hCCcEEe
Confidence 5689999997654 3 34333 3577654
No 197
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=84.83 E-value=1.2 Score=40.65 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=49.9
Q ss_pred CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCC
Q 041524 113 ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192 (524)
Q Consensus 113 ~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ge 192 (524)
.+||+|+++.+|+.++.-..+.+.. .+...+++-|+-+...|+.+.. -.||+|.+--
T Consensus 61 ~~aD~viiTGsTlvN~Ti~~iL~~~---------------------~~~~~vil~GpS~~~~P~~l~~--~Gv~~v~g~~ 117 (147)
T PF04016_consen 61 PWADVVIITGSTLVNGTIDDILELA---------------------RNAREVILYGPSAPLHPEALFD--YGVTYVGGSR 117 (147)
T ss_dssp GG-SEEEEECHHCCTTTHHHHHHHT---------------------TTSSEEEEESCCGGS-GGGGCC--TT-SEEEEEE
T ss_pred ccCCEEEEEeeeeecCCHHHHHHhC---------------------ccCCeEEEEecCchhhHHHHHh--CCCCEEEEEE
Confidence 5899999999999997665554432 1356899999999999988865 4689876643
Q ss_pred CcccHHHHHHHHhcCC
Q 041524 193 AYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 193 ge~~l~~Ll~~~~~g~ 208 (524)
-.+...+++.+..|.
T Consensus 118 -v~d~~~~~~~i~~Gg 132 (147)
T PF04016_consen 118 -VVDPEKVLRAISEGG 132 (147)
T ss_dssp -ES-HHHHHHHHCTTS
T ss_pred -EeCHHHHHHHHHcCC
Confidence 456677777776654
No 198
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=83.26 E-value=3 Score=40.54 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=39.3
Q ss_pred HHHHHHHHHHCCCeecc---CCC----------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 93 MEIVLSIMKNAGYSEVI---NVP----------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~---~~~----------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
...+...|+.+||+++. +.+ .+||+|++++.. +.. ...+.+.++++ + +..
T Consensus 105 ~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~-~~~-~~~~~~~i~~L---~------------~~~ 167 (213)
T cd02069 105 KNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLL-VPS-LDEMVEVAEEM---N------------RRG 167 (213)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccch-hcc-HHHHHHHHHHH---H------------hcC
Confidence 56788899999998631 111 489999996443 322 22334444443 1 124
Q ss_pred CCCEEEEEccccc
Q 041524 160 HPPKIVVLGCMAE 172 (524)
Q Consensus 160 p~~~IvvgG~~at 172 (524)
++++|++||.-.+
T Consensus 168 ~~~~i~vGG~~~~ 180 (213)
T cd02069 168 IKIPLLIGGAATS 180 (213)
T ss_pred CCCeEEEEChhcC
Confidence 6889999996544
No 199
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=83.13 E-value=45 Score=36.97 Aligned_cols=146 Identities=16% Similarity=0.044 Sum_probs=86.5
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC-
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF- 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~- 339 (524)
.+.+.++.++-++.|.+.|++.|...- ... + ..-.+.++++.+..
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~---p~a------------s-------------------~~d~~~~~~i~~~~l 67 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGW---PGS------------N-------------------PKDTEFFKRAKELKL 67 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcC---CcC------------C-------------------hhHHHHHHHHHHhCC
Confidence 678999999999999999999988631 111 0 00122344443321
Q ss_pred CceEE-EEecCCCCCC---CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEE
Q 041524 340 PEMRF-RYTSPHPKDF---PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLS 413 (524)
Q Consensus 340 ~~~~i-r~~s~~p~~~---~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~ 413 (524)
....+ .+......++ ++..++.+.++ |...+++.+-+.+....+.+++. ...+.+.+.++.+++. |..+.
T Consensus 68 ~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~--g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~ 143 (524)
T PRK12344 68 KHAKLAAFGSTRRAGVSAEEDPNLQALLDA--GTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAH--GREVI 143 (524)
T ss_pred CCcEEEEEeeccccCCCcccHHHHHHHHhC--CCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEE
Confidence 11222 2221222223 46678888888 88999988765554445556553 3566777888889988 76655
Q ss_pred EeEEEcCC--CCCHHHHHHHHHHHHHcCCCeEE
Q 041524 414 SDFICGFC--GETEEEHADTLTLMKAVGYDMAY 444 (524)
Q Consensus 414 ~~fI~G~P--gET~ed~~~tl~~l~~l~~d~~~ 444 (524)
.+.+.-+. -.+.+-+.+.++.+.+.+.+.+.
T Consensus 144 ~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~ 176 (524)
T PRK12344 144 FDAEHFFDGYKANPEYALATLKAAAEAGADWVV 176 (524)
T ss_pred EccccccccccCCHHHHHHHHHHHHhCCCCeEE
Confidence 43321111 13455556666777777888765
No 200
>PRK00915 2-isopropylmalate synthase; Validated
Probab=82.70 E-value=34 Score=37.78 Aligned_cols=146 Identities=12% Similarity=0.023 Sum_probs=85.1
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
..+.+.++-++=++.|.+.|++.|.+.- ... + ...+ +.++++.+..
T Consensus 20 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~------------s------------------~~d~-~~v~~i~~~~ 65 (513)
T PRK00915 20 GASLTVEEKLQIAKQLERLGVDVIEAGF---PAS------------S------------------PGDF-EAVKRIARTV 65 (513)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcC---CCC------------C------------------hHHH-HHHHHHHhhC
Confidence 3578999999999999999999988631 111 0 0112 2234443333
Q ss_pred CceEEE-EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeE
Q 041524 340 PEMRFR-YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDF 416 (524)
Q Consensus 340 ~~~~ir-~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~f 416 (524)
+...+. |...+..+ -+..++.++++ |...+++-+-+.+-.+...+++.. ..+.+.+.++.+++. |..+..+.
T Consensus 66 ~~~~i~a~~r~~~~d-id~a~~a~~~~--~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ 140 (513)
T PRK00915 66 KNSTVCGLARAVKKD-IDAAAEALKPA--EAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSA 140 (513)
T ss_pred CCCEEEEEccCCHHH-HHHHHHHhhcC--CCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 333332 22222222 12244444466 888888877555555555666532 345566888889888 77665444
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 417 ICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 417 I~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.-+.. -+.+.+.+.++.+.+.+.+.+.+
T Consensus 141 ed~~r-~d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 141 EDATR-TDLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred CCCCC-CCHHHHHHHHHHHHHcCCCEEEE
Confidence 43332 24566677777777778876553
No 201
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=82.65 E-value=22 Score=35.67 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=84.0
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.+.++.+.+++.++.+.+.|..-|-+-++. . +. ....++..+++.+.+..
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~---~------------~~---------------eE~~r~~~~v~~l~~~~ 68 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYLDVNAGT---A------------VE---------------EEPETMEWLVETVQEVV 68 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCC---C------------ch---------------hHHHHHHHHHHHHHHhC
Confidence 456899999999999999998876654431 1 00 01234555666665432
Q ss_pred CceEEEEecC---------------------CCCC-CCHHHHHHHHcCCCCcceeecCcC-CcCHHHHhhhCCCCCHHHH
Q 041524 340 PEMRFRYTSP---------------------HPKD-FPDELLYIMRDRPNVCKYIHLPAQ-TGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 340 ~~~~ir~~s~---------------------~p~~-~~~elL~~l~~~~~G~~~i~igiE-Sgs~~vL~~m~R~~t~e~~ 396 (524)
...+.+.|. .... -.++++++++++ ||..+-+... .|.++..+. ..+..
T Consensus 69 -~~plsIDT~~~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~--g~~vv~m~~~~~g~P~t~~~-----~~~~l 140 (261)
T PRK07535 69 -DVPLCIDSPNPAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKY--NAPVVALTMDDTGIPKDAED-----RLAVA 140 (261)
T ss_pred -CCCEEEeCCCHHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHh--CCCEEEEecCCCCCCCCHHH-----HHHHH
Confidence 123333332 1111 145677777777 7777655442 122221111 14666
Q ss_pred HHHHHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 397 LDLVQKIRQIIPDV---GLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 397 ~~~v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
.+.++.+.++ |+ .+..|=.+|+.|-+.+...++++.++.+
T Consensus 141 ~~~v~~a~~~--GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l 183 (261)
T PRK07535 141 KELVEKADEY--GIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRI 183 (261)
T ss_pred HHHHHHHHHc--CCCHhHEEEeCCCCcccCChHHHHHHHHHHHHH
Confidence 7788888888 88 6899999997787777776666655544
No 202
>PRK09389 (R)-citramalate synthase; Provisional
Probab=81.64 E-value=70 Score=35.12 Aligned_cols=143 Identities=9% Similarity=-0.046 Sum_probs=88.6
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-.+.+.++.++-++.|.+.|++.|.... ... + ..=.+.++.+.+..
T Consensus 18 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~------------~-------------------~~d~e~v~~i~~~~ 63 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDELGVDVIEAGS---AIT------------S-------------------EGEREAIKAVTDEG 63 (488)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeC---CcC------------C-------------------HHHHHHHHHHHhcC
Confidence 3678999999999999999999988642 111 0 01123344444332
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
....+... .+. ..+.++...++ |...+++.+-+-+-.+...+++. ...+.+.+.++.+++. |..+..+..
T Consensus 64 ~~~~i~a~-~r~---~~~di~~a~~~--g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~~~~e 135 (488)
T PRK09389 64 LNAEICSF-ARA---VKVDIDAALEC--DVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDH--GLIVELSGE 135 (488)
T ss_pred CCcEEEee-ccc---CHHHHHHHHhC--CcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEe
Confidence 22232211 111 24457777777 89999998844333333445543 2345666777788887 877777766
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
-+ .--+.+-+.+.++.+.+.+.+.+.+
T Consensus 136 d~-~r~~~~~l~~~~~~~~~~Ga~~i~l 162 (488)
T PRK09389 136 DA-SRADLDFLKELYKAGIEAGADRICF 162 (488)
T ss_pred eC-CCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 54 3445677778888888888887654
No 203
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=81.24 E-value=46 Score=30.88 Aligned_cols=78 Identities=12% Similarity=0.024 Sum_probs=56.5
Q ss_pred HHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC--------C------
Q 041524 359 LYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGE--------T------ 424 (524)
Q Consensus 359 L~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE--------T------ 424 (524)
++.++++ |+..|.+......+.... .+...+..+.++++ |+.+.+--....... .
T Consensus 1 l~~~~~~--G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~ 69 (213)
T PF01261_consen 1 LEAAAEA--GFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDY--GLKIASLHPPTNFWSPDEENGSANDEREEA 69 (213)
T ss_dssp HHHHHHT--THSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHT--TCEEEEEEEEESSSCTGTTSTTSSSHHHHH
T ss_pred ChHHHHc--CCCEEEEecCCCcccccc-------hHHHHHHHHHHHHc--CCeEEEEecccccccccccccCcchhhHHH
Confidence 4678888 999999988766655444 56777888888898 998654333332222 2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEe
Q 041524 425 EEEHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 425 ~ed~~~tl~~l~~l~~d~~~i~~ 447 (524)
.+.+.+.++++..++...+.+..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~ 92 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHS 92 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceeecC
Confidence 67888999999999999877654
No 204
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=78.27 E-value=76 Score=34.65 Aligned_cols=139 Identities=9% Similarity=0.069 Sum_probs=84.4
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEecc-CCC-CCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQN-VNS-YNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n-~~~-y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
..+.++.+.=++.|.+.|+..|.+.+.. |.. ++ |. ...-.+.++.+.+..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~--------------------Fl--------~e~p~e~l~~l~~~~ 72 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVR--------------------FL--------NENPWERLKEIRKRL 72 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhc--------------------cc--------CCCHHHHHHHHHHhC
Confidence 5678888888888888899999885432 211 10 00 011345555555543
Q ss_pred CceEE----EEec-----CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCc
Q 041524 340 PEMRF----RYTS-----PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDV 410 (524)
Q Consensus 340 ~~~~i----r~~s-----~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi 410 (524)
+...+ |... ..|+++-+..++...++ |+..+.+.. +.|+ .+.....++.+++. |.
T Consensus 73 ~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~--Gvd~irif~-~lnd-----------~~n~~~~i~~ak~~--G~ 136 (467)
T PRK14041 73 KNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEY--GLDIIRIFD-ALND-----------IRNLEKSIEVAKKH--GA 136 (467)
T ss_pred CCCEEEEEeccccccCcccccchhhHHHHHHHHHC--CcCEEEEEE-eCCH-----------HHHHHHHHHHHHHC--CC
Confidence 43333 2111 23555556667777777 888877754 3443 34567777888887 66
Q ss_pred EEEEeE--EEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 411 GLSSDF--ICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 411 ~i~~~f--I~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+.+.+ .++ |-.|.+.+.+..+.+.+.+.+.+.+
T Consensus 137 ~v~~~i~~t~~-p~~t~e~~~~~a~~l~~~Gad~I~i 172 (467)
T PRK14041 137 HVQGAISYTVS-PVHTLEYYLEFARELVDMGVDSICI 172 (467)
T ss_pred EEEEEEEeccC-CCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 655433 233 6677788888888788888776554
No 205
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=77.87 E-value=8.2 Score=36.38 Aligned_cols=45 Identities=20% Similarity=0.429 Sum_probs=30.0
Q ss_pred EEEEec--CCCCCHHHHHHHHH-----HHHHCCCeeccCCCCCCcEEEEeeccCcch
Q 041524 79 IYQETY--GCQMNVNDMEIVLS-----IMKNAGYSEVINVPENAEVIFINTCAIRDY 128 (524)
Q Consensus 79 ~~~~t~--GC~~N~~d~e~i~~-----~L~~~Gy~~~~~~~~~aDvv~intc~v~~~ 128 (524)
+|..++ || -|.|.++. -+.+.|+..+...|.+||++++ |-+++..
T Consensus 43 lw~~~~~~~C----C~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllV-tG~VT~~ 94 (182)
T PRK14816 43 LWPLTFATSC----CGIEFMALGAARYDMARFGFEVARASPRQADMIMV-CGTITNK 94 (182)
T ss_pred cceeeeCcch----HHHHHHHhcCccccHHHhCccccCCCCCcceEEEE-ecCCcch
Confidence 666665 56 77887755 3556676542377899999999 4555554
No 206
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=77.77 E-value=8.7 Score=35.82 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=34.9
Q ss_pred EEEEecCCCCCHHHHHHHHH-----HHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHH
Q 041524 79 IYQETYGCQMNVNDMEIVLS-----IMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQ 135 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~-----~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~ 135 (524)
+|..++|+ |==|.|.++. -+++.|+.. +..|.+||++++ |-+++.+-...+.+
T Consensus 33 lw~~~~~t--~cC~iEi~a~~~p~yD~eRfGi~~-~aSPRhADvLlV-tG~vT~km~~~l~~ 90 (173)
T PRK14818 33 LYYLTFGL--ACCGIELMQTGGPRADVMRFGAIP-RASPRQADFMIV-AGTLTYKMAERARL 90 (173)
T ss_pred ceeeEeCC--ccHHHHHHHhcCCccCHHHcCCee-cCCcccccEEEE-eCcCccccHHHHHH
Confidence 77777774 3377777654 356667754 778999999999 55566554443333
No 207
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=76.78 E-value=2.8 Score=39.64 Aligned_cols=38 Identities=8% Similarity=0.174 Sum_probs=25.1
Q ss_pred HHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHH
Q 041524 99 IMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLN 138 (524)
Q Consensus 99 ~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~ 138 (524)
-|.+.|+.. +..|.+|||+++ |-+++.+-...+.+..+
T Consensus 53 D~eRfGi~~-~asPR~ADvllV-tG~Vt~km~~~l~~~y~ 90 (189)
T PRK14813 53 DLERFGIFP-RSSPRQSDLMIV-AGTVTMKMAERVVRLYE 90 (189)
T ss_pred CHHHcCCee-cCCcccceEEEE-eccCchhhHHHHHHHHH
Confidence 466778754 678899999999 45566655444444443
No 208
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=76.49 E-value=75 Score=31.61 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=84.1
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.+..+++.+++.++.+.+.|..-|-+-++..... .... .......++..+++.+.+..
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~------------~~~~----------~~~~E~~rl~~~v~~l~~~~ 75 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPG------------AEPV----------SVEEELERVIPVLRALAGEP 75 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCC------------CCcC----------CHHHHHHHHHHHHHHHHhcC
Confidence 3557899999999999999988776654433211 0000 00111234666666665432
Q ss_pred CceEEEEecCCC-------------------CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC----CCC----
Q 041524 340 PEMRFRYTSPHP-------------------KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR----GYT---- 392 (524)
Q Consensus 340 ~~~~ir~~s~~p-------------------~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R----~~t---- 392 (524)
...+.+.|.+| ...+++++++++++ ||..+-+....-.. .|.. +..
T Consensus 76 -~~piSIDT~~~~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~--~~~vV~m~~~~~~~----~~~~~~~~~~~~~~~ 148 (258)
T cd00423 76 -DVPISVDTFNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEY--GAPVVLMHMDGTPQ----TMQNNPYYADVVDEV 148 (258)
T ss_pred -CCeEEEeCCcHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHc--CCCEEEECcCCCCc----ccccCCCcchHHHHH
Confidence 23344444221 22236788888877 77777766543211 1111 111
Q ss_pred HHHHHHHHHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 393 REAYLDLVQKIRQIIPDV---GLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
.+.+.+.++.+.++ |+ .+..|=.+||.. +.++-..+++.+..+
T Consensus 149 ~~~~~~~i~~~~~~--Gi~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~ 194 (258)
T cd00423 149 VEFLEERVEAATEA--GIPPEDIILDPGIGFGK-TEEHNLELLRRLDAF 194 (258)
T ss_pred HHHHHHHHHHHHHc--CCCHHHEEEeCCCCccC-CHHHHHHHHHHHHHH
Confidence 35566777778888 75 478899999887 555444455554443
No 209
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=75.03 E-value=99 Score=34.86 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=80.0
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEec-cCCC-CCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQ-NVNS-YNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~-n~~~-y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
..+.++.+.=++.+.+.|+..|.+.|. .|.. ++-. +..-.+.|+.+.+..
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~----------------------------~e~p~e~lr~l~~~~ 74 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFL----------------------------GEDPWERLRELKKAM 74 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhcccc----------------------------CCCHHHHHHHHHHhC
Confidence 345667777677777779999988643 3332 2100 111234455555544
Q ss_pred CceEE----E----Eec-CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCc
Q 041524 340 PEMRF----R----YTS-PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDV 410 (524)
Q Consensus 340 ~~~~i----r----~~s-~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi 410 (524)
+...+ | +.+ ..|+++-++.++...++ |...+++.. +.|+ .+....+++.+++. |.
T Consensus 75 ~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~--Gid~~rifd-~lnd-----------~~~~~~ai~~ak~~--G~ 138 (593)
T PRK14040 75 PNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKN--GMDVFRVFD-AMND-----------PRNLETALKAVRKV--GA 138 (593)
T ss_pred CCCeEEEEecCcceeccccCcHHHHHHHHHHHHhc--CCCEEEEee-eCCc-----------HHHHHHHHHHHHHc--CC
Confidence 44333 2 222 23555556677777777 888888773 3332 24666777777777 65
Q ss_pred EEEEeEEE-cCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 411 GLSSDFIC-GFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 411 ~i~~~fI~-G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+...+-+ +-|..|.+.+.+.++.+.+.+.+.+.+
T Consensus 139 ~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i 174 (593)
T PRK14040 139 HAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI 174 (593)
T ss_pred eEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEE
Confidence 44333221 346667777777777777777665544
No 210
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=74.40 E-value=34 Score=28.17 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHCCC-eec-cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGY-SEV-INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy-~~~-~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|..-.+.+...|...|| ++. +.+. ..+|+|+++...... ...++++.|++.
T Consensus 7 ~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~-~~~~~~~~i~~~----------------- 68 (112)
T PF00072_consen 7 DPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDG-DGLELLEQIRQI----------------- 68 (112)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSS-BHHHHHHHHHHH-----------------
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccc-cccccccccccc-----------------
Confidence 44556778888888898 432 1221 479999998665553 344555555543
Q ss_pred cCCCCEEEEEccccc-ccHHHHHhhCCcceEEECCCCcccH
Q 041524 158 SKHPPKIVVLGCMAE-RLKDKILDADKMVDVVCGPDAYRDL 197 (524)
Q Consensus 158 ~~p~~~IvvgG~~at-~~~e~~l~~~~~vD~Vv~gege~~l 197 (524)
.+..+|++-+.+.+ ....+.+ +....|++..+-....+
T Consensus 69 -~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l 107 (112)
T PF00072_consen 69 -NPSIPIIVVTDEDDSDEVQEAL-RAGADDYLSKPFSPEEL 107 (112)
T ss_dssp -TTTSEEEEEESSTSHHHHHHHH-HTTESEEEESSSSHHHH
T ss_pred -cccccEEEecCCCCHHHHHHHH-HCCCCEEEECCCCHHHH
Confidence 25667766554444 3334455 35667788887544333
No 211
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=74.31 E-value=46 Score=34.29 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEeccCC
Q 041524 264 PVESIVKEVDELWKEGVKEVTLLGQNVN 291 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l~d~n~~ 291 (524)
+++.-++-++.+.+.|++.+.++-..-|
T Consensus 106 ~~~~dl~~L~~~~~~GvR~lgltwn~~N 133 (313)
T COG2355 106 PLGDDLDKLELFHALGVRSLGLTWNRDN 133 (313)
T ss_pred cccccHHHHHHHHHhCceEEEeeeccCC
Confidence 4555678889999999999888754333
No 212
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=73.18 E-value=22 Score=35.69 Aligned_cols=156 Identities=14% Similarity=0.192 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc-e
Q 041524 264 PVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE-M 342 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~-~ 342 (524)
.++.+.+-++.|.++|+++|.+..-.+.. | ..+.+|.+.+...... .
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiip-------------G-------------------~Ey~~l~~~v~~~~~~F~ 103 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIP-------------G-------------------EEYEKLRATVEAYKHDFK 103 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCS-------------S-------------------HHHHHHHHHHHHHCCCSS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeC-------------c-------------------HhHHHHHHHHHHhhccCC
Confidence 46777777788889999999988654431 3 3566666666554332 3
Q ss_pred EEEEecCCCCCC------CH----HHHHHHHcC-C---CCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCC
Q 041524 343 RFRYTSPHPKDF------PD----ELLYIMRDR-P---NVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIP 408 (524)
Q Consensus 343 ~ir~~s~~p~~~------~~----elL~~l~~~-~---~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~p 408 (524)
.+.+.. |... ++ ++++.|.+. + ++-..+.+| +|++. .....|..+-..+++. +
T Consensus 104 ~i~~g~--PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~~~a~vlmG--HGt~h--------~an~~Y~~l~~~l~~~-~ 170 (262)
T PF06180_consen 104 KIVLGR--PLLYTMGQENSPEDYEAVAEALAEEFPKKRKDEAVVLMG--HGTPH--------PANAAYSALQAMLKKH-G 170 (262)
T ss_dssp EEEEE----SCSS-----SHHHHHHHHHHHHCCS-TT-TTEEEEEEE-----SC--------HHHHHHHHHHHHHHCC-T
T ss_pred eEEecc--cccccccccCChHHHHHHHHHHHHhccccCCCCEEEEEe--CCCCC--------CccHHHHHHHHHHHhC-C
Confidence 565653 3333 23 344444432 1 122223333 22211 1233444444555554 2
Q ss_pred CcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHH
Q 041524 409 DVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469 (524)
Q Consensus 409 gi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k 469 (524)
.-.+....+=|+|. +.+.+..+++.++..+.+.||....|.++.+.|..+=++.++
T Consensus 171 ~~~v~vgtvEG~P~-----~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~nDmaGde~dSWk 226 (262)
T PF06180_consen 171 YPNVFVGTVEGYPS-----LEDVIARLKKKGIKKVHLIPLMLVAGDHAKNDMAGDEEDSWK 226 (262)
T ss_dssp -TTEEEEETTSSSB-----HHHHHHHHHHHT-SEEEEEEESSS--HHHHCCCCSSSTTSHH
T ss_pred CCeEEEEEeCCCCC-----HHHHHHHHHhcCCCeEEEEecccccchhhhhhhcCCCcchHH
Confidence 12344444446663 667788888899999999999999999999877654444343
No 213
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=72.89 E-value=1.7e+02 Score=33.02 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.|.|-. +.. .+..+.+|+.++.+..+ .
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt~-G~~------------------------------~P~~~~~lv~~lk~~~~-~ 198 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDMA-GLL------------------------------TPYAAYELVKALKEEVD-L 198 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcC-CCc------------------------------CHHHHHHHHHHHHHhCC-C
Confidence 478999999999999999999887632 211 13568888888877654 4
Q ss_pred EEEEecCCC-CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCC
Q 041524 343 RFRYTSPHP-KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFC 421 (524)
Q Consensus 343 ~ir~~s~~p-~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~P 421 (524)
.+.+.+-+- ..-....+.++ ++ |+.+++..+.. |..+.+-......+..++.. |.. +
T Consensus 199 pi~~H~Hnt~Gla~An~laAv-~a--Gad~vD~ai~g--------~g~~agn~~~e~vv~~L~~~--g~~---------~ 256 (592)
T PRK09282 199 PVQLHSHCTSGLAPMTYLKAV-EA--GVDIIDTAISP--------LAFGTSQPPTESMVAALKGT--PYD---------T 256 (592)
T ss_pred eEEEEEcCCCCcHHHHHHHHH-Hh--CCCEEEeeccc--------cCCCcCCHhHHHHHHHHHhC--CCC---------C
Confidence 455542111 11123445554 34 99999988774 44444444455555555443 432 3
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 041524 422 GETEEEHADTLTLMKAVG 439 (524)
Q Consensus 422 gET~ed~~~tl~~l~~l~ 439 (524)
+-..+.+.+.-+++.++.
T Consensus 257 ~idl~~l~~~s~~~~~~~ 274 (592)
T PRK09282 257 GLDLELLFEIAEYFREVR 274 (592)
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 445677777777776664
No 214
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=72.36 E-value=1.7e+02 Score=32.89 Aligned_cols=140 Identities=12% Similarity=0.065 Sum_probs=80.2
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEec-cCCC-CCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQ-NVNS-YNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~-n~~~-y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
..+.++.+.=++.|.+.|+..|.+.|. .|.. ++- + ...-.+.++.+.+..
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f---------------~-------------~e~~~e~l~~l~~~~ 68 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRF---------------L-------------NEDPWERLRELKKAL 68 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccccccccc---------------C-------------CCCHHHHHHHHHHhC
Confidence 567888888888888889999988643 2221 100 0 011244555555533
Q ss_pred CceEE----EEec-----CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCc
Q 041524 340 PEMRF----RYTS-----PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDV 410 (524)
Q Consensus 340 ~~~~i----r~~s-----~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi 410 (524)
+...+ |... ..|+++-++.++...++ |+..+.+..- .|+ .+.....++.+++. |.
T Consensus 69 ~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~--Gvd~irif~~-lnd-----------~~n~~~~i~~ak~~--G~ 132 (582)
T TIGR01108 69 PNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVEN--GMDVFRIFDA-LND-----------PRNLQAAIQAAKKH--GA 132 (582)
T ss_pred CCCEEEEEEccccccccccCchhhHHHHHHHHHHC--CCCEEEEEEe-cCc-----------HHHHHHHHHHHHHc--CC
Confidence 43322 2111 24666667777877777 8887766532 222 13466666777777 65
Q ss_pred EEEEeEEE-cCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 411 GLSSDFIC-GFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 411 ~i~~~fI~-G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+...+-+ +-|--|.+.+.+.++.+.+.+.+.+.+
T Consensus 133 ~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i 168 (582)
T TIGR01108 133 HAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI 168 (582)
T ss_pred EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 55544322 234456677777776666666665443
No 215
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=71.57 E-value=1.7e+02 Score=32.49 Aligned_cols=148 Identities=14% Similarity=0.116 Sum_probs=90.8
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-.+.+.++-++=++.|.+.|+++|... |... + ..-.+.++++.+..
T Consensus 17 g~~~s~eeKl~Ia~~L~~~GVd~IE~G---~p~~------------s-------------------~~d~~~v~~i~~~~ 62 (526)
T TIGR00977 17 GVSFSLEDKIRIAERLDDLGIHYIEGG---WPGA------------N-------------------PKDVQFFWQLKEMN 62 (526)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCC------------C-------------------hHHHHHHHHHHHhC
Confidence 367899999999999999999998863 1111 0 01123334343322
Q ss_pred C-ceEE-EEecC-CCCC--CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEE
Q 041524 340 P-EMRF-RYTSP-HPKD--FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGL 412 (524)
Q Consensus 340 ~-~~~i-r~~s~-~p~~--~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i 412 (524)
. ...+ .|... +++. -.+..++.+.++ |...+++-+=+-+-.+...+++. ...+.+.+.++.+++. |..+
T Consensus 63 ~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~--~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--g~~V 138 (526)
T TIGR00977 63 FKNAKIVAFCSTRRPHKKVEEDKMLQALIKA--ETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ--GDEV 138 (526)
T ss_pred CCCcEEEEEeeecCCCCCCchHHHHHHHhcC--CCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeE
Confidence 1 1232 22212 2221 235678888888 88888887766666666666653 2455666778889988 7665
Q ss_pred EE---eEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 413 SS---DFICGFCGETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 413 ~~---~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
.. +|.-|+- -+++.+.+.++.+.+.+.+.+.+.
T Consensus 139 ~~~~e~f~D~~r-~~~~~l~~~~~~a~~aGad~i~i~ 174 (526)
T TIGR00977 139 IYDAEHFFDGYK-ANPEYALATLATAQQAGADWLVLC 174 (526)
T ss_pred EEEeeeeeeccc-CCHHHHHHHHHHHHhCCCCeEEEe
Confidence 43 3323332 356777778888888888877654
No 216
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=71.42 E-value=1.8e+02 Score=32.89 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=72.5
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEecc-CCC-CCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQN-VNS-YNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n-~~~-y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
..+.++.+.=+..|.+.|+..|.+.|.. |.. ++- + ...-.+.++.+.+..
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rf---------------l-------------~edp~e~l~~l~~~~ 73 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRY---------------L-------------NEDPWERLRKLKKAL 73 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhccc---------------C-------------CccHHHHHHHHHHhC
Confidence 4567777777788888899998886432 221 100 0 011233444444443
Q ss_pred CceE----EEEe-----cCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCc
Q 041524 340 PEMR----FRYT-----SPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDV 410 (524)
Q Consensus 340 ~~~~----ir~~-----s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi 410 (524)
+... +|.. ...|+++-++.++...++ |...+.+..-. |+ .+.....++.+++. |.
T Consensus 74 ~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~--Gvd~irif~~l-nd-----------~~n~~~~i~~ak~~--G~ 137 (592)
T PRK09282 74 PNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAEN--GIDIFRIFDAL-ND-----------VRNMEVAIKAAKKA--GA 137 (592)
T ss_pred CCCEEEEEeccccccccccccchhhHHHHHHHHHC--CCCEEEEEEec-Ch-----------HHHHHHHHHHHHHc--CC
Confidence 3322 2211 124666666777777776 77776664322 22 13445555555665 55
Q ss_pred EEEEeEEE-cCCCCCHHHHHHHHHHHHHcCCCeEE
Q 041524 411 GLSSDFIC-GFCGETEEEHADTLTLMKAVGYDMAY 444 (524)
Q Consensus 411 ~i~~~fI~-G~PgET~ed~~~tl~~l~~l~~d~~~ 444 (524)
.+...+-+ +-|--|.+.+.+.++-+.+.+.+.+.
T Consensus 138 ~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~ 172 (592)
T PRK09282 138 HVQGTISYTTSPVHTIEKYVELAKELEEMGCDSIC 172 (592)
T ss_pred EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 44433322 12555556666666555555555443
No 217
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=70.64 E-value=52 Score=33.85 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=19.5
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCC
Q 041524 269 VKEVDELWKEGVKEVTLLGQNVNSY 293 (524)
Q Consensus 269 v~Ei~~l~~~G~kei~l~d~n~~~y 293 (524)
++.++.+.+.|++.+.++-..-|.+
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~ 140 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKF 140 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCcc
Confidence 6788899999999999986444444
No 218
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=70.08 E-value=13 Score=45.09 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHHHHHHHCCCeeccCC----C----------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 93 MEIVLSIMKNAGYSEVINV----P----------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~----~----------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
--++.-.|+.+||++ ++- + .+||+|+++....+. ...+.+.++++ + +.
T Consensus 749 KnIV~~~L~~~GfeV-IdLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t--~~~m~~vi~~L---~------------~~ 810 (1178)
T TIGR02082 749 KNIVGVVLSCNGYEV-VDLGVMVPIEKILEAAKDHNADVIGLSGLITPS--LDEMKEVAEEM---N------------RR 810 (1178)
T ss_pred HHHHHHHHHhCCCEE-EECCCCCCHHHHHHHHHHhCCCEEEEcCccccc--HHHHHHHHHHH---H------------hc
Confidence 567888999999986 322 1 489999996543332 23355555554 1 22
Q ss_pred CCCCEEEEEcccccc
Q 041524 159 KHPPKIVVLGCMAER 173 (524)
Q Consensus 159 ~p~~~IvvgG~~at~ 173 (524)
.++++|+|||--.+.
T Consensus 811 g~~v~v~vGGa~~s~ 825 (1178)
T TIGR02082 811 GITIPLLIGGAATSK 825 (1178)
T ss_pred CCCceEEEeccccch
Confidence 467999999976554
No 219
>PRK08005 epimerase; Validated
Probab=69.82 E-value=32 Score=33.33 Aligned_cols=133 Identities=9% Similarity=0.077 Sum_probs=80.6
Q ss_pred cCChHHHHHHHHHHHHCCCcEEE--EEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVT--LLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~--l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
+-+.-.+-+|++.+.+.|+..+. +.|.+|--. +.+ +. +.++.+.+..
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN---------------~tf-------------G~---~~i~~l~~~t 57 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSLHLDIEDTSFINN---------------ITF-------------GM---KTIQAVAQQT 57 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---------------ccc-------------CH---HHHHHHHhcC
Confidence 45667889999999999988755 456554321 000 12 2334443321
Q ss_pred -CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 340 -PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 340 -~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
-.+.+.+...+ ++..++.+.++ |+..+.+-+|+.. ...+.++.+|+. |+.. .+-+
T Consensus 58 ~~~~DvHLMv~~----P~~~i~~~~~~--gad~It~H~Ea~~--------------~~~~~l~~Ik~~--G~k~--GlAl 113 (210)
T PRK08005 58 RHPLSFHLMVSS----PQRWLPWLAAI--RPGWIFIHAESVQ--------------NPSEILADIRAI--GAKA--GLAL 113 (210)
T ss_pred CCCeEEEeccCC----HHHHHHHHHHh--CCCEEEEcccCcc--------------CHHHHHHHHHHc--CCcE--EEEE
Confidence 12344443333 46789999999 9999999999642 345678889998 7643 3333
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
. |+...+.++..+. .+|.+- .++..||..-.
T Consensus 114 n-P~Tp~~~i~~~l~-----~vD~Vl--vMsV~PGf~GQ 144 (210)
T PRK08005 114 N-PATPLLPYRYLAL-----QLDALM--IMTSEPDGRGQ 144 (210)
T ss_pred C-CCCCHHHHHHHHH-----hcCEEE--EEEecCCCccc
Confidence 3 6666666654433 245443 45678886543
No 220
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=69.73 E-value=28 Score=33.95 Aligned_cols=133 Identities=11% Similarity=0.112 Sum_probs=80.4
Q ss_pred cCChHHHHHHHHHHHHCCCcEEE--EEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh-
Q 041524 262 SRPVESIVKEVDELWKEGVKEVT--LLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE- 338 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~--l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~- 338 (524)
+.+.-.+-+|++.+.+.|++.+. +.|.+|--. +.+ + .++++.+.+.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn---------------~tf-------------g---~~~i~~i~~~~ 56 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN---------------LTF-------------G---APICKALRDYG 56 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCcccCc---------------ccc-------------C---HHHHHHHHHhC
Confidence 45667889999999998888655 466555321 000 1 2234444432
Q ss_pred -CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 339 -FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 339 -~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
.-.+.+.+...+ ++..++.++++ |+..+.+=+|+. +...+.++.+|+. |+... +.
T Consensus 57 ~~~~~dvHLMv~~----p~~~i~~~~~~--gad~i~~H~Ea~--------------~~~~~~l~~ik~~--g~k~G--la 112 (220)
T PRK08883 57 ITAPIDVHLMVKP----VDRIIPDFAKA--GASMITFHVEAS--------------EHVDRTLQLIKEH--GCQAG--VV 112 (220)
T ss_pred CCCCEEEEeccCC----HHHHHHHHHHh--CCCEEEEcccCc--------------ccHHHHHHHHHHc--CCcEE--EE
Confidence 112344444333 46789999999 999999999963 2356778888888 76432 22
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
+. |+-..+.+... +.. .|.+-+ ++..||+.-.
T Consensus 113 ln-P~Tp~~~i~~~---l~~--~D~vlv--MtV~PGfgGq 144 (220)
T PRK08883 113 LN-PATPLHHLEYI---MDK--VDLILL--MSVNPGFGGQ 144 (220)
T ss_pred eC-CCCCHHHHHHH---HHh--CCeEEE--EEecCCCCCc
Confidence 22 55555555443 333 454433 5788888654
No 221
>PRK14057 epimerase; Provisional
Probab=69.59 E-value=1.3e+02 Score=30.17 Aligned_cols=134 Identities=7% Similarity=-0.065 Sum_probs=81.9
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEE--EEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVT--LLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~--l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
-+.+.-.+-+|++.+.+.|+..+. +.|.+|.-. +.+ +. ++++.+.+
T Consensus 27 l~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itf-------------Gp---~~i~~i~~- 74 (254)
T PRK14057 27 LAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ---------------FTV-------------GP---WAVGQLPQ- 74 (254)
T ss_pred hhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc---------------ccc-------------CH---HHHHHhcc-
Confidence 345667889999999998988765 455554321 000 11 23333322
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcE-------
Q 041524 339 FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG------- 411 (524)
Q Consensus 339 ~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~------- 411 (524)
.-.+.+.+...+ ++..++.+.++ |+..|.+=+|+. ....+.++.+|+. |+.
T Consensus 75 ~~p~DvHLMV~~----P~~~i~~~~~a--Gad~It~H~Ea~--------------~~~~~~l~~Ir~~--G~k~~~~~~~ 132 (254)
T PRK14057 75 TFIKDVHLMVAD----QWTAAQACVKA--GAHCITLQAEGD--------------IHLHHTLSWLGQQ--TVPVIGGEMP 132 (254)
T ss_pred CCCeeEEeeeCC----HHHHHHHHHHh--CCCEEEEeeccc--------------cCHHHHHHHHHHc--CCCccccccc
Confidence 112344444333 57789999999 999999999963 2356788888988 753
Q ss_pred EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 412 LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 412 i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
+.+.+-+. |+-..+.++..++. +|.+- .++..||.--
T Consensus 133 ~kaGlAln-P~Tp~e~i~~~l~~-----vD~VL--vMtV~PGfgG 169 (254)
T PRK14057 133 VIRGISLC-PATPLDVIIPILSD-----VEVIQ--LLAVNPGYGS 169 (254)
T ss_pred ceeEEEEC-CCCCHHHHHHHHHh-----CCEEE--EEEECCCCCc
Confidence 33444444 77677776655542 46544 4567777543
No 222
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=69.24 E-value=1.9e+02 Score=31.97 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC-ce
Q 041524 264 PVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP-EM 342 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~ 342 (524)
+++.+++-++.+.+.|+..|.|-| ..+.. .+....+|+..+.+..+ ..
T Consensus 153 t~e~~~~~a~~l~~~Gad~I~IkD-taGll------------------------------~P~~~~~LV~~Lk~~~~~~i 201 (499)
T PRK12330 153 TVEGFVEQAKRLLDMGADSICIKD-MAALL------------------------------KPQPAYDIVKGIKEACGEDT 201 (499)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC-CccCC------------------------------CHHHHHHHHHHHHHhCCCCC
Confidence 889999999999999999998876 32221 13568889999888764 55
Q ss_pred EEEEecCCC-CCCCHHHHHHHHcCCCCcceeecCcCCc
Q 041524 343 RFRYTSPHP-KDFPDELLYIMRDRPNVCKYIHLPAQTG 379 (524)
Q Consensus 343 ~ir~~s~~p-~~~~~elL~~l~~~~~G~~~i~igiESg 379 (524)
.+.+.+-+- ..-....+..+. + |+..|+..+...
T Consensus 202 pI~~H~Hnt~GlA~An~laAie-A--Gad~vDtai~Gl 236 (499)
T PRK12330 202 RINLHCHSTTGVTLVSLMKAIE-A--GVDVVDTAISSM 236 (499)
T ss_pred eEEEEeCCCCCcHHHHHHHHHH-c--CCCEEEeecccc
Confidence 666653211 111233444443 4 999999888765
No 223
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=68.74 E-value=80 Score=30.86 Aligned_cols=118 Identities=10% Similarity=0.123 Sum_probs=69.6
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEE--EEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVT--LLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~--l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
-+.++-.+.+|++.+.+.|++.+. +.|.+|.-. +. .+ .+.++++.+.
T Consensus 14 ~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn-----------------~~-----------~G---~~~v~~lr~~ 62 (228)
T PTZ00170 14 LAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN-----------------LS-----------FG---PPVVKSLRKH 62 (228)
T ss_pred hhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-----------------cC-----------cC---HHHHHHHHhc
Confidence 345677899999999998987655 456554311 00 01 2344445444
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 339 FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 339 ~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
.+...+.+. ..+. -+...++.+.++ |...+.+=.|+.. +...++++.+++. |..+...+.
T Consensus 63 ~~~~~lDvH-Lm~~-~p~~~i~~~~~~--Gad~itvH~ea~~-------------~~~~~~l~~ik~~--G~~~gval~- 122 (228)
T PTZ00170 63 LPNTFLDCH-LMVS-NPEKWVDDFAKA--GASQFTFHIEATE-------------DDPKAVARKIREA--GMKVGVAIK- 122 (228)
T ss_pred CCCCCEEEE-ECCC-CHHHHHHHHHHc--CCCEEEEeccCCc-------------hHHHHHHHHHHHC--CCeEEEEEC-
Confidence 333322222 1222 256678899998 9999999888643 1255677777887 766554443
Q ss_pred cCCCCCHHHHHHH
Q 041524 419 GFCGETEEEHADT 431 (524)
Q Consensus 419 G~PgET~ed~~~t 431 (524)
|..+.+++...
T Consensus 123 --p~t~~e~l~~~ 133 (228)
T PTZ00170 123 --PKTPVEVLFPL 133 (228)
T ss_pred --CCCCHHHHHHH
Confidence 55555665433
No 224
>PRK15452 putative protease; Provisional
Probab=68.56 E-value=29 Score=37.59 Aligned_cols=86 Identities=7% Similarity=-0.135 Sum_probs=61.4
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC-CHHHHHHHHH
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGE-TEEEHADTLT 433 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE-T~ed~~~tl~ 433 (524)
+.+-++..-++ |...|.+|.++.+-+. -.+.++.+++.++++.+++. |+.+...+ --+|.+ ..+.+.+.++
T Consensus 12 ~~e~l~aAi~~--GADaVY~G~~~~~~R~---~~~~f~~edl~eav~~ah~~--g~kvyvt~-n~i~~e~el~~~~~~l~ 83 (443)
T PRK15452 12 TLKNMRYAFAY--GADAVYAGQPRYSLRV---RNNEFNHENLALGINEAHAL--GKKFYVVV-NIAPHNAKLKTFIRDLE 83 (443)
T ss_pred CHHHHHHHHHC--CCCEEEECCCccchhh---hccCCCHHHHHHHHHHHHHc--CCEEEEEe-cCcCCHHHHHHHHHHHH
Confidence 45566666667 9999999999888654 23578899999999999999 76654321 123444 3456666777
Q ss_pred HHHHcCCCeEEEEee
Q 041524 434 LMKAVGYDMAYMFAY 448 (524)
Q Consensus 434 ~l~~l~~d~~~i~~~ 448 (524)
.+.++++|.+-+..+
T Consensus 84 ~l~~~gvDgvIV~d~ 98 (443)
T PRK15452 84 PVIAMKPDALIMSDP 98 (443)
T ss_pred HHHhCCCCEEEEcCH
Confidence 777889998776543
No 225
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=68.21 E-value=37 Score=33.21 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=81.0
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEE--EEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVT--LLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~--l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
-+.+.-.+-+|++.+.+.|++.+. +.|.+|--. +.+ +. ++++.+.+.
T Consensus 11 l~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN---------------~tf-------------g~---~~i~~lr~~ 59 (223)
T PRK08745 11 LSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPN---------------LTI-------------GP---MVCQALRKH 59 (223)
T ss_pred hhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCC---------------ccc-------------CH---HHHHHHHhh
Confidence 345667889999999998988755 456555321 000 12 234444432
Q ss_pred --CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeE
Q 041524 339 --FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDF 416 (524)
Q Consensus 339 --~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~f 416 (524)
.-.+.+.+...+ ++..++.++++ |+..|.+=+|+. ....+.++.+|+. |+.. .+
T Consensus 60 ~~~~~~dvHLMv~~----P~~~i~~~~~~--gad~I~~H~Ea~--------------~~~~~~l~~Ir~~--g~k~--Gl 115 (223)
T PRK08745 60 GITAPIDVHLMVEP----VDRIVPDFADA--GATTISFHPEAS--------------RHVHRTIQLIKSH--GCQA--GL 115 (223)
T ss_pred CCCCCEEEEeccCC----HHHHHHHHHHh--CCCEEEEcccCc--------------ccHHHHHHHHHHC--CCce--eE
Confidence 112344444333 46789999998 999999999963 2356778889998 7543 33
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 417 ICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 417 I~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
-+. |+-..+.++..++ .+|.+- .++..||..-.
T Consensus 116 aln-P~T~~~~i~~~l~-----~vD~Vl--vMtV~PGf~GQ 148 (223)
T PRK08745 116 VLN-PATPVDILDWVLP-----ELDLVL--VMSVNPGFGGQ 148 (223)
T ss_pred EeC-CCCCHHHHHHHHh-----hcCEEE--EEEECCCCCCc
Confidence 333 6666666654443 245443 45677786543
No 226
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=67.87 E-value=1.9e+02 Score=31.60 Aligned_cols=243 Identities=15% Similarity=0.207 Sum_probs=127.3
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCE
Q 041524 84 YGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPK 163 (524)
Q Consensus 84 ~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 163 (524)
++=+|...|...++..|.+.||.. ++....|- +.+|- +...+ .=|.+|+.++. ..|+.+
T Consensus 28 ~atr~~t~d~l~ia~~ld~~G~~s-iE~wGGAt---fd~~~-rfl~e-dpwerlr~~r~---------------~~~nt~ 86 (468)
T PRK12581 28 MATRLSIEDMLPVLTILDKIGYYS-LECWGGAT---FDACI-RFLNE-DPWERLRTLKK---------------GLPNTR 86 (468)
T ss_pred cccCCCHHHHHHHHHHHHhcCCCE-EEecCCcc---hhhhh-cccCC-CHHHHHHHHHH---------------hCCCCc
Confidence 466799999999999999999975 44322221 11111 11111 13778877621 123333
Q ss_pred --EEEEc---ccccccHHHHHh------hCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCC
Q 041524 164 --IVVLG---CMAERLKDKILD------ADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKN 232 (524)
Q Consensus 164 --IvvgG---~~at~~~e~~l~------~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~ 232 (524)
..+-| ..-..+|+++.+ ...++|++-..+.-..+..+...+..- + ..
T Consensus 87 lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~a--------------------k--~~ 144 (468)
T PRK12581 87 LQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAV--------------------K--KT 144 (468)
T ss_pred eeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHH--------------------H--Hc
Confidence 33334 222223444221 134677777776666555555443210 0 00
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
+..+.+.+ .|...| ....+-+++-++.+.+.|+..|.|.| ..+..
T Consensus 145 G~~~~~~i--------~yt~sp-------~~t~~y~~~~a~~l~~~Gad~I~IkD-taG~l------------------- 189 (468)
T PRK12581 145 GKEAQLCI--------AYTTSP-------VHTLNYYLSLVKELVEMGADSICIKD-MAGIL------------------- 189 (468)
T ss_pred CCEEEEEE--------EEEeCC-------cCcHHHHHHHHHHHHHcCCCEEEECC-CCCCc-------------------
Confidence 11111110 111111 23677788888889889999998876 22221
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY 391 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~ 391 (524)
.+....+|+.++.+. +...+.+.+-+ ...-....+..+ ++ |+..++..+.+ |..+.
T Consensus 190 -----------~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAi-eA--Gad~vD~ai~g--------~g~ga 246 (468)
T PRK12581 190 -----------TPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAV-EA--GADRIDTALSP--------FSEGT 246 (468)
T ss_pred -----------CHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHH-Hc--CCCEEEeeccc--------cCCCc
Confidence 135688888888763 34555555321 111223444454 34 99999988764 44444
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
+--....++..++.. |+. .|+ +.+.+.+..++++++
T Consensus 247 gN~~tE~lv~~L~~~--g~~------tgi---Dl~~L~~~a~~~~~v 282 (468)
T PRK12581 247 SQPATESMYLALKEA--GYD------ITL---DETLLEQAANHLRQA 282 (468)
T ss_pred CChhHHHHHHHHHhc--CCC------CCc---CHHHHHHHHHHHHHH
Confidence 444455555555554 543 233 345555555555544
No 227
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=67.44 E-value=32 Score=30.60 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEc-CCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICG-FCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G-~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
.+.+...+.++.+++. |+.= .-+|+| -+.-.++++.+..+.+++++++.++ -|||+..
T Consensus 62 ~~~~~~~~~~~~l~~~--gl~~-v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf------~pgt~~~ 120 (128)
T cd02072 62 HGEIDCKGLREKCDEA--GLKD-ILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF------APGTPPE 120 (128)
T ss_pred CCHHHHHHHHHHHHHC--CCCC-CeEEEECCCCCChhhhHHHHHHHHHcCCCEEE------CcCCCHH
Confidence 4678888999999998 6521 334554 3444667777788889999998653 3677664
No 228
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=66.99 E-value=1.2e+02 Score=31.79 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=63.4
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
...++++.+-|||+. ++ -+++.+++-++.+.+.|+..|.|.| .++.-
T Consensus 177 ~v~~~is~~fg~p~~----------~r---~~~~~l~~~~~~~~~~Gad~I~l~D-T~G~a------------------- 223 (347)
T PLN02746 177 PVRGYVSCVVGCPIE----------GP---VPPSKVAYVAKELYDMGCYEISLGD-TIGVG------------------- 223 (347)
T ss_pred eEEEEEEeeecCCcc----------CC---CCHHHHHHHHHHHHHcCCCEEEecC-CcCCc-------------------
Confidence 345677777888754 21 4789999999999999999999876 33221
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCC---HHHHHHHHcCCCCcceeecCcCC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFP---DELLYIMRDRPNVCKYIHLPAQT 378 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~---~elL~~l~~~~~G~~~i~igiES 378 (524)
.+..+.++++.+.+..+...+.+.. | +++- ...+..+. + |+.+++..+--
T Consensus 224 -----------~P~~v~~lv~~l~~~~~~~~i~~H~-H-nd~GlA~AN~lAA~~-a--Ga~~vd~sv~G 276 (347)
T PLN02746 224 -----------TPGTVVPMLEAVMAVVPVDKLAVHF-H-DTYGQALANILVSLQ-M--GISTVDSSVAG 276 (347)
T ss_pred -----------CHHHHHHHHHHHHHhCCCCeEEEEE-C-CCCChHHHHHHHHHH-h--CCCEEEEeccc
Confidence 1356888888888766644454442 2 1222 33444443 3 99999876653
No 229
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=66.59 E-value=1.5e+02 Score=32.78 Aligned_cols=144 Identities=8% Similarity=-0.019 Sum_probs=79.2
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-...+.++-++=++.|.+.|++.|...- ... + ..-.+.++++.+..
T Consensus 100 gv~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~------------s-------------------~~e~e~i~~i~~~~ 145 (503)
T PLN03228 100 GGSLTPPQKLEIARQLAKLRVDIMEVGF---PGS------------S-------------------EEEFEAVKTIAKTV 145 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCC------------C-------------------HHHHHHHHHHHHhc
Confidence 3678999999999999999999887632 111 0 11223344444321
Q ss_pred Cc---------eEEE-EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhC
Q 041524 340 PE---------MRFR-YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQII 407 (524)
Q Consensus 340 ~~---------~~ir-~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~ 407 (524)
+. ..+. |......++ +..++.+..+ |...+++-+=+.+-.+...+++. ...+.+.+.++.+++.
T Consensus 146 ~~~~~~~~~l~~~i~a~~R~~~~dI-d~a~~a~~~a--~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~- 221 (503)
T PLN03228 146 GNEVDEETGYVPVICGIARCKKRDI-EAAWEALKYA--KRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL- 221 (503)
T ss_pred ccccccccccceEEeeecccCHhhH-HHHHHhhccc--CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-
Confidence 10 1221 111221111 2233334334 66777776655444445566653 2456667788888887
Q ss_pred CCcEEEEeEEEcCCCCCHHH---HHHHHHHHHHcCCCeEEE
Q 041524 408 PDVGLSSDFICGFCGETEEE---HADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 408 pgi~i~~~fI~G~PgET~ed---~~~tl~~l~~l~~d~~~i 445 (524)
|.. .+.+|.+..+..| +.+.++.+.+.+.+.+.+
T Consensus 222 -G~~---~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l 258 (503)
T PLN03228 222 -GFH---DIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGI 258 (503)
T ss_pred -CCc---eEEeccccccccCHHHHHHHHHHHHhcCCCEEEE
Confidence 653 3566666554333 455556666677887654
No 230
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=66.05 E-value=1.3e+02 Score=30.16 Aligned_cols=129 Identities=14% Similarity=0.142 Sum_probs=70.9
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC-
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF- 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~- 339 (524)
|.++..++..++..+.+.|++.|.++..+.....+ .+.-.+++ -..-.+|++.+....
T Consensus 68 r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~------------~~~~~~~~---------~~~a~~Li~~i~~~~~ 126 (274)
T cd00537 68 RDRNRIELQSILLGAHALGIRNILALRGDPPKGGD------------QPGAKPVG---------FVYAVDLVELIRKENG 126 (274)
T ss_pred CCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCC------------CCCCCCCC---------CCCHHHHHHHHHHhcC
Confidence 34445889999999999999999988544332210 00000010 123566666665543
Q ss_pred CceEEEEe---cCCCCCCC--HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEE
Q 041524 340 PEMRFRYT---SPHPKDFP--DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSS 414 (524)
Q Consensus 340 ~~~~ir~~---s~~p~~~~--~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~ 414 (524)
+.+.+... ..||..-+ .++-.+.++...|+.++.- .=.++.+.+.+.++.+++. |+ ..
T Consensus 127 ~~~~igva~yPe~hp~~~~~~~~~~~L~~Ki~aGA~f~iT-------------Q~~fd~~~~~~~~~~~~~~--gi--~v 189 (274)
T cd00537 127 GGFSIGVAAYPEGHPEAPSLEEDIKRLKRKVDAGADFIIT-------------QLFFDNDAFLRFVDRCRAA--GI--TV 189 (274)
T ss_pred CCCccccccCCCcCCCCCCHHHHHHHHHHHHHCCCCEEee-------------cccccHHHHHHHHHHHHHc--CC--CC
Confidence 23333322 13554332 3344444443347765431 1136778999999999998 65 34
Q ss_pred eEEEcCCCC-CHHH
Q 041524 415 DFICGFCGE-TEEE 427 (524)
Q Consensus 415 ~fI~G~PgE-T~ed 427 (524)
-+|.|+..= +...
T Consensus 190 PIi~GI~p~~s~~~ 203 (274)
T cd00537 190 PIIPGIMPLTSYKQ 203 (274)
T ss_pred CEEeeccccCCHHH
Confidence 577777543 4343
No 231
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=66.00 E-value=8.3 Score=36.34 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=28.4
Q ss_pred EEEEecCCCCCHHHHHHHHH-----HHHHCCCeeccCCCCCCcEEEEeeccCcch
Q 041524 79 IYQETYGCQMNVNDMEIVLS-----IMKNAGYSEVINVPENAEVIFINTCAIRDY 128 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~-----~L~~~Gy~~~~~~~~~aDvv~intc~v~~~ 128 (524)
+|+.++||. ==|.|.+.. .+.+.|+......+.+||++++ |-+++.+
T Consensus 35 lw~~~~~~s--CC~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillV-tG~VT~~ 86 (183)
T PRK14815 35 LWPMPMGLA--CCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIV-AGTVTYK 86 (183)
T ss_pred ccceeEccc--hHHHHHHHhcCccccHHHhCcccCCCCCccccEEEE-eCcCchh
Confidence 556655542 267777653 2455565432367899999999 4455554
No 232
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=65.95 E-value=34 Score=30.73 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcC-CCCCHHHHHHH
Q 041524 353 DFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF-CGETEEEHADT 431 (524)
Q Consensus 353 ~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~-PgET~ed~~~t 431 (524)
.-++++++...+. +..-+-++.=. +.+.+...++++.+++. |+.-.. +|+|= |.-.++|+.+-
T Consensus 39 v~~e~~v~aa~~~--~adiVglS~l~-----------~~~~~~~~~~~~~l~~~--gl~~~~-vivGG~~vi~~~d~~~~ 102 (134)
T TIGR01501 39 SPQEEFIKAAIET--KADAILVSSLY-----------GHGEIDCKGLRQKCDEA--GLEGIL-LYVGGNLVVGKQDFPDV 102 (134)
T ss_pred CCHHHHHHHHHHc--CCCEEEEeccc-----------ccCHHHHHHHHHHHHHC--CCCCCE-EEecCCcCcChhhhHHH
Confidence 3356677777765 44444442211 45677888999999998 653222 55553 33456676666
Q ss_pred HHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 432 LTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 432 l~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
.+.+++++++.++ -|||+..
T Consensus 103 ~~~l~~~Gv~~vF------~pgt~~~ 122 (134)
T TIGR01501 103 EKRFKEMGFDRVF------APGTPPE 122 (134)
T ss_pred HHHHHHcCCCEEE------CcCCCHH
Confidence 6778889988653 3677664
No 233
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=65.94 E-value=2e+02 Score=31.20 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=78.9
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEecc-CCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQN-VNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n-~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
..+.++.+.=++.|.+.|+..|.+.+.. |.+- . .|. ...-.+.++.+.+..+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~---------------~----~f~--------~e~p~e~l~~l~~~~~ 74 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDAC---------------L----RFL--------NEDPWERLRKIRKAVK 74 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhh---------------h----ccC--------CCCHHHHHHHHHHhCC
Confidence 5677888888888888899999886532 2110 0 000 0112344455544433
Q ss_pred ceEE----EEe-----cCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcE
Q 041524 341 EMRF----RYT-----SPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG 411 (524)
Q Consensus 341 ~~~i----r~~-----s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~ 411 (524)
...+ |.. ...|+++-.+.++...++ |+..+.+..-. |+- ..+.++++.+++. |..
T Consensus 75 ~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~--Gvd~irif~~l-nd~-----------~n~~~~v~~ak~~--G~~ 138 (448)
T PRK12331 75 KTKLQMLLRGQNLLGYRNYADDVVESFVQKSVEN--GIDIIRIFDAL-NDV-----------RNLETAVKATKKA--GGH 138 (448)
T ss_pred CCEEEEEeccccccccccCchhhHHHHHHHHHHC--CCCEEEEEEec-CcH-----------HHHHHHHHHHHHc--CCe
Confidence 3332 211 135666677777777777 88887775532 221 1355567777777 654
Q ss_pred EEE--eEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 412 LSS--DFICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 412 i~~--~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+.. .+..+ |--|.+-+.+..+.+.+.+.+.+.+
T Consensus 139 v~~~i~~t~~-p~~~~~~~~~~a~~l~~~Gad~I~i 173 (448)
T PRK12331 139 AQVAISYTTS-PVHTIDYFVKLAKEMQEMGADSICI 173 (448)
T ss_pred EEEEEEeecC-CCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 433 22223 5556666666666677777665543
No 234
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=65.91 E-value=1.1e+02 Score=30.00 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=64.7
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcC
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF 420 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~ 420 (524)
...+.+++..| +.+-.-.++ |...+.|| |=+.+-.-+|.++.++++++.+..|+.+|++.++..+=.-+
T Consensus 61 ~lPICVSaVep-----~~f~~aV~A--GAdliEIG----NfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL 129 (242)
T PF04481_consen 61 NLPICVSAVEP-----ELFVAAVKA--GADLIEIG----NFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHIL 129 (242)
T ss_pred CCCeEeecCCH-----HHHHHHHHh--CCCEEEec----chHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccc
Confidence 34566665543 444444456 89988886 66666677888999999999999999999998887765555
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 421 CGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 421 PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
|- ++-.+....+.+++.|.++-
T Consensus 130 ~l---d~Qv~LA~~L~~~GaDiIQT 151 (242)
T PF04481_consen 130 PL---DQQVQLAEDLVKAGADIIQT 151 (242)
T ss_pred cH---HHHHHHHHHHHHhCCcEEEc
Confidence 42 33334555677788997763
No 235
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=65.88 E-value=1.6e+02 Score=29.97 Aligned_cols=146 Identities=15% Similarity=0.228 Sum_probs=79.1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+++.++++++.+.+.|+.-|-+-++.... |.+. .. ..+--.++..+++.+....
T Consensus 33 ~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-------------g~~~-----v~----~eeE~~Rv~pvI~~l~~~~- 89 (282)
T PRK11613 33 THNSLIDAVKHANLMINAGATIIDVGGESTRP-------------GAAE-----VS----VEEELDRVIPVVEAIAQRF- 89 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC-------------CCCC-----CC----HHHHHHHHHHHHHHHHhcC-
Confidence 34689999999999999998877766554321 1110 00 0011123444556665432
Q ss_pred ceEEEEecCCC-----------------CCC-CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC--------HH
Q 041524 341 EMRFRYTSPHP-----------------KDF-PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT--------RE 394 (524)
Q Consensus 341 ~~~ir~~s~~p-----------------~~~-~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t--------~e 394 (524)
...+.+.+.+| ..+ ++++++.++++ ||..+-+..+ |.++. |..... .+
T Consensus 90 ~~~ISIDT~~~~va~~AL~~GadiINDI~g~~d~~~~~~~a~~--~~~vVlmh~~-g~p~~---~~~~~~y~dv~~~v~~ 163 (282)
T PRK11613 90 EVWISVDTSKPEVIRESAKAGAHIINDIRSLSEPGALEAAAET--GLPVCLMHMQ-GNPKT---MQEAPKYDDVFAEVNR 163 (282)
T ss_pred CCeEEEECCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHc--CCCEEEEcCC-CCCCc---cccCCCcccHHHHHHH
Confidence 23455554221 111 45666666666 6666555432 12211 111111 13
Q ss_pred HHHHHHHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 395 AYLDLVQKIRQIIPDV---GLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 395 ~~~~~v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
.+.+.++.+.+. |+ .|-.|=-+|| |.+.++-.+++.-+..+
T Consensus 164 ~l~~~i~~a~~~--GI~~~~IilDPGiGF-~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 164 YFIEQIARCEAA--GIAKEKLLLDPGFGF-GKNLSHNYQLLARLAEF 207 (282)
T ss_pred HHHHHHHHHHHc--CCChhhEEEeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 456677778888 87 6778877898 66666555555544443
No 236
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=65.60 E-value=1.6e+02 Score=32.39 Aligned_cols=146 Identities=13% Similarity=0.009 Sum_probs=80.9
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-.+.+.++-++=++.|.+.|++.|... |... + ...+ +.++.+.+..
T Consensus 17 g~~~s~e~K~~ia~~L~~~GV~~IEvG---~p~~------------s------------------~~d~-e~v~~i~~~~ 62 (494)
T TIGR00973 17 GASLTVEEKLQIALALERLGVDIIEAG---FPVS------------S------------------PGDF-EAVQRIARTV 62 (494)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEE---CCCC------------C------------------HHHH-HHHHHHHHhC
Confidence 356899999999999999999998753 1111 0 1122 2234443333
Q ss_pred CceEEE-EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeE
Q 041524 340 PEMRFR-YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDF 416 (524)
Q Consensus 340 ~~~~ir-~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~f 416 (524)
+..++. |...+..++ +..++.+..+ +...+++-+=+.+..+...+++. ...+.+.+.++.+++. |..+..+.
T Consensus 63 ~~~~i~al~r~~~~di-d~a~~al~~~--~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~ 137 (494)
T TIGR00973 63 KNPRVCGLARCVEKDI-DAAAEALKPA--EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNF--TDDVEFSC 137 (494)
T ss_pred CCCEEEEEcCCCHHhH-HHHHHhcccc--CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEc
Confidence 323332 222233333 2334445444 56777776655555555566543 2345555788888888 66544433
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 417 ICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 417 I~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.-+.. -+.+.+.+.++.+.+.+.+.+.+
T Consensus 138 Ed~~r-~d~~~l~~~~~~~~~~Ga~~i~l 165 (494)
T TIGR00973 138 EDAGR-TEIPFLARIVEAAINAGATTINI 165 (494)
T ss_pred CCCCC-CCHHHHHHHHHHHHHcCCCEEEe
Confidence 33321 24556666667677778776543
No 237
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=64.47 E-value=1.2e+02 Score=30.77 Aligned_cols=107 Identities=15% Similarity=0.251 Sum_probs=64.5
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
|-++...|.+.++.+.+.|+++|.++..+.. .++.. +.. -..-.+|++.+.....
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~~--------~~~----------------~~~s~dLv~lik~~~~ 141 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPP-AGDKP--------GGK----------------DLYSVDLVELIKKMRG 141 (291)
T ss_pred cCCCHHHHHHHHHHHHHhCCceEEEecCCCC-CCCCC--------Ccc----------------ccCHHHHHHHHHHhcC
Confidence 4558899999999999999999988765553 21100 100 1245666666665443
Q ss_pred c-eEEEEecCCCCCC------CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHh
Q 041524 341 E-MRFRYTSPHPKDF------PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQI 406 (524)
Q Consensus 341 ~-~~ir~~s~~p~~~------~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~ 406 (524)
. +.+... .+|..- ..++..+.++. ++|-+.++..+ -++.+.+.+..+.++.+
T Consensus 142 ~~f~i~~A-~~Pe~h~~s~~~~~d~~~lkrKv-----------~aGAd~~iTQ~--~fd~e~~~~~~~~~~~~ 200 (291)
T COG0685 142 GIFDIGVA-AYPEGHPESKDVKEDIKRLKRKV-----------DAGADFFITQF--FFDVEAFERFAERVRAA 200 (291)
T ss_pred CeEEEEEE-eCCCCCccchhhHHHHHHHHHHH-----------hcchHHHHHHH--ccCHHHHHHHHHHHHhc
Confidence 3 444443 344333 22333444342 24444555554 36889999999999998
No 238
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=63.22 E-value=61 Score=32.33 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=57.5
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCH---------HHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE-------
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNS---------AVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC------- 418 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~---------~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~------- 418 (524)
+.++++.|.+. |+..|.||+-..+| ...+.+..|.+.+++.+.++.+|+..+++.+. .+++
T Consensus 26 ~~~~~~~l~~~--Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~ 102 (256)
T TIGR00262 26 SLEIIKTLIEA--GADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRK 102 (256)
T ss_pred HHHHHHHHHHc--CCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhh
Confidence 45566777666 88888888854221 23445677888999999999988652233322 2222
Q ss_pred -----------------cCCCCCHHHHHHHHHHHHHcCCCeEE
Q 041524 419 -----------------GFCGETEEEHADTLTLMKAVGYDMAY 444 (524)
Q Consensus 419 -----------------G~PgET~ed~~~tl~~l~~l~~d~~~ 444 (524)
=+|.+..|+..+.++.+++.+++.+.
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~ 145 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIF 145 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEE
Confidence 13567777888888888888887653
No 239
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=63.21 E-value=25 Score=34.90 Aligned_cols=50 Identities=10% Similarity=0.255 Sum_probs=30.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHH-----HHCCCeeccCCCCCCcEEEEeeccCcchHHH
Q 041524 79 IYQETYGCQMNVNDMEIVLSIM-----KNAGYSEVINVPENAEVIFINTCAIRDYAEH 131 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~~L-----~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~ 131 (524)
+|...+|| +==|.|.++... .+.|+...+..+.+||+.+|+ -+++..-..
T Consensus 33 lw~~~~gt--~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLVt-G~VT~km~~ 87 (264)
T PRK14819 33 VWPMAFGL--ACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVA-GTVTKKMAP 87 (264)
T ss_pred cceeeeCC--cccHHHHHHhccccccHHHhCcccccCCCCcceEEEEe-cCCchhhHH
Confidence 77777774 236777776543 344443224668899999994 455554433
No 240
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=63.04 E-value=1.3e+02 Score=30.07 Aligned_cols=134 Identities=17% Similarity=0.245 Sum_probs=74.1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
|.++...+..++..+.+.|++.|..+..+.....+ . .....| ....+|++.+.+..+
T Consensus 68 r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~-~------------~~~~~f----------~~a~~Li~~i~~~~~ 124 (272)
T TIGR00676 68 IGATREEIREILREYRELGIRHILALRGDPPKGEG-T------------PTPGGF----------NYASELVEFIRNEFG 124 (272)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC-C------------CCCCCC----------CCHHHHHHHHHHhcC
Confidence 34678889999999999999998854433332210 0 000111 135566666666555
Q ss_pred ceEEEEec-C--CCCCCCH-HHHH-HHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Q 041524 341 EMRFRYTS-P--HPKDFPD-ELLY-IMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSD 415 (524)
Q Consensus 341 ~~~ir~~s-~--~p~~~~~-elL~-~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~ 415 (524)
.+.+.... + ||..-+. +.++ +.++...|+.++.- .=-++.+.+.+.++.+++. |+.+ =
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iT-------------Q~~fd~~~~~~~~~~~~~~--gi~~--P 187 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAIT-------------QLFFDNDDYYRFVDRCRAA--GIDV--P 187 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEee-------------ccccCHHHHHHHHHHHHHc--CCCC--C
Confidence 55554432 2 4443332 2333 33333337764321 1136889999999999998 6543 5
Q ss_pred EEEcCCCCCHHHHHHHHHHHH
Q 041524 416 FICGFCGETEEEHADTLTLMK 436 (524)
Q Consensus 416 fI~G~PgET~ed~~~tl~~l~ 436 (524)
++.|+..=+ ..+.++.|+.
T Consensus 188 Ii~Gi~p~~--s~k~~~~~~~ 206 (272)
T TIGR00676 188 IIPGIMPIT--NFKQLLRFAE 206 (272)
T ss_pred EecccCCcC--CHHHHHHHHh
Confidence 777774322 2233445554
No 241
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.44 E-value=1.4e+02 Score=28.91 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEE
Q 041524 267 SIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRY 346 (524)
Q Consensus 267 ~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~ 346 (524)
+.++-++.+.+.|++++.+.+-+-... +. ....++++++.+..+ ..+.+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~------------~~------------------~~~~~~i~~i~~~~~-~~l~v 81 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFE------------GE------------------RKNAEAIEKIIEAVG-VPVQL 81 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhc------------CC------------------cccHHHHHHHHHHcC-CcEEE
Confidence 345555667778999999987553211 11 123444444544322 22322
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE------EcC
Q 041524 347 TSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI------CGF 420 (524)
Q Consensus 347 ~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI------~G~ 420 (524)
+-..-+.+-++.+-++ |+..+++|-.... +.+.+.++++.+... .+.++.|+. -|.
T Consensus 82 ---~GGi~~~~~~~~~~~~--Ga~~v~iGs~~~~-----------~~~~~~~i~~~~g~~--~i~~sid~~~~~v~~~g~ 143 (241)
T PRK13585 82 ---GGGIRSAEDAASLLDL--GVDRVILGTAAVE-----------NPEIVRELSEEFGSE--RVMVSLDAKDGEVVIKGW 143 (241)
T ss_pred ---cCCcCCHHHHHHHHHc--CCCEEEEChHHhh-----------ChHHHHHHHHHhCCC--cEEEEEEeeCCEEEECCC
Confidence 2222355666666677 9999999866532 122333333332111 233444432 233
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeee
Q 041524 421 CGETEEEHADTLTLMKAVGYDMAYMFAYS 449 (524)
Q Consensus 421 PgET~ed~~~tl~~l~~l~~d~~~i~~~s 449 (524)
-.++..+..+....+.+.+++.+.+....
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~ 172 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTNVD 172 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 22333355566666778888888765543
No 242
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=62.41 E-value=1.1e+02 Score=29.03 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=52.0
Q ss_pred HHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCC
Q 041524 330 DLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPD 409 (524)
Q Consensus 330 ~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pg 409 (524)
+.++.+.+..+...+-.. .+..+.....++.+.++ |...+.+..++.. ....++++.+++. |
T Consensus 41 ~~i~~l~~~~~~~~i~~d-~k~~d~~~~~~~~~~~~--Gad~i~vh~~~~~-------------~~~~~~i~~~~~~--g 102 (206)
T TIGR03128 41 EAVKEMKEAFPDRKVLAD-LKTMDAGEYEAEQAFAA--GADIVTVLGVADD-------------ATIKGAVKAAKKH--G 102 (206)
T ss_pred HHHHHHHHHCCCCEEEEE-EeeccchHHHHHHHHHc--CCCEEEEeccCCH-------------HHHHHHHHHHHHc--C
Confidence 455556555443333322 11111122247778888 9999988877632 3456778888888 8
Q ss_pred cEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 410 VGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 410 i~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+.+..+++- |.+..++.+. +.+++.+.+.+
T Consensus 103 ~~~~~~~~~--~~t~~~~~~~----~~~~g~d~v~~ 132 (206)
T TIGR03128 103 KEVQVDLIN--VKDKVKRAKE----LKELGADYIGV 132 (206)
T ss_pred CEEEEEecC--CCChHHHHHH----HHHcCCCEEEE
Confidence 765543322 3343444433 34558887755
No 243
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=62.37 E-value=60 Score=32.21 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc-------CCCC-----
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG-------FCGE----- 423 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G-------~PgE----- 423 (524)
++.++.++++ |+..|.+.+....+.. ..-.++.++..++-+.+.+. |+.+.+-...+ -|.+
T Consensus 19 ~e~~~~~~~~--G~~~iEl~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~--Gl~i~~~~~~~~~~~~~~~~d~~~r~~ 91 (284)
T PRK13210 19 EERLVFAKEL--GFDFVEMSVDESDERL---ARLDWSKEERLSLVKAIYET--GVRIPSMCLSGHRRFPFGSRDPATRER 91 (284)
T ss_pred HHHHHHHHHc--CCCeEEEecCCccccc---ccccCCHHHHHHHHHHHHHc--CCCceEEecccccCcCCCCCCHHHHHH
Confidence 7789999998 9999998765322111 01124566777788888888 88776532211 1221
Q ss_pred CHHHHHHHHHHHHHcCCCeEEE
Q 041524 424 TEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 424 T~ed~~~tl~~l~~l~~d~~~i 445 (524)
..+.+++.++++..++.+.+.+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE
Confidence 3456778888899999998865
No 244
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=62.32 E-value=12 Score=39.48 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=38.5
Q ss_pred cccCCCc-cEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcch
Q 041524 71 SEVHSQG-RIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDY 128 (524)
Q Consensus 71 ~~~~~~~-~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~ 128 (524)
+.+++.+ +.+|.|.||..|..|.+.+.+.|++.||. ++.+-+.+++++
T Consensus 389 s~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYd----------v~~lFaysmR~k 437 (552)
T KOG2492|consen 389 SMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYD----------VVFLFAYSMREK 437 (552)
T ss_pred hhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccC----------eeeeEEeeeccc
Confidence 4466655 59999999999999999999999999995 444556666654
No 245
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=62.31 E-value=69 Score=27.18 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCC
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVD 462 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~ 462 (524)
.+.+.++.+.+++..+ ..+...|+=|. -++.+.++.+.+-+...+.+.||...+|.++.+.+..
T Consensus 15 ~~~~~~l~~~l~~~~~-~~v~~~~lE~~-----P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipg 78 (103)
T cd03413 15 NAVYAALEYVLREEDP-ANVFVGTVEGY-----PGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAG 78 (103)
T ss_pred hhHHHHHHHHHHhcCC-CcEEEEEEcCC-----CCHHHHHHHHHHcCCCEEEEEehhheecccchhcCCC
Confidence 4667777777777633 44555555344 4467788888888999999999999999998874443
No 246
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.06 E-value=1.1e+02 Score=29.81 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=65.0
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..++++.++-++.|.+.|++-+.++=.+-+. ...+.+|.++..+..
T Consensus 21 vr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a--------------------------------~~~i~~l~~~~~~~~ 68 (222)
T PRK07114 21 FYHADVEVAKKVIKACYDGGARVFEFTNRGDFA--------------------------------HEVFAELVKYAAKEL 68 (222)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH--------------------------------HHHHHHHHHHHHhhC
Confidence 467789999999999999999987765321110 122444444444445
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC-C-------CCHHHHHHHH
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR-G-------YTREAYLDLV 400 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R-~-------~t~e~~~~~v 400 (524)
|.+.+...+ .++.+.++...++ |..++.-| ..++++++..++ + .|..++..+.
T Consensus 69 p~~~vGaGT----Vl~~e~a~~a~~a--GA~FiVsP--~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~ 129 (222)
T PRK07114 69 PGMILGVGS----IVDAATAALYIQL--GANFIVTP--LFNPDIAKVCNRRKVPYSPGCGSLSEIGYAE 129 (222)
T ss_pred CCeEEeeEe----CcCHHHHHHHHHc--CCCEEECC--CCCHHHHHHHHHcCCCEeCCCCCHHHHHHHH
Confidence 555555554 3577777887777 88877666 477888876654 2 3566655554
No 247
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.02 E-value=1.4e+02 Score=28.10 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=71.9
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..++++.++-++.+.+.|++-|.+...+.+ -.++++.+.+..
T Consensus 18 ~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~------------------------------------~~e~~~~~~~~~ 61 (187)
T PRK07455 18 IRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ------------------------------------PAELISQLREKL 61 (187)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC------------------------------------HHHHHHHHHHhC
Confidence 35668999999999999999999888753321 234444444444
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG 419 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G 419 (524)
+.......+ .+..+.++...++ |...+|+|-- ++++++ ..+.. ++ .+|.|
T Consensus 62 ~~~~~g~gt----vl~~d~~~~A~~~--gAdgv~~p~~--~~~~~~----------------~~~~~--~~----~~i~G 111 (187)
T PRK07455 62 PECIIGTGT----ILTLEDLEEAIAA--GAQFCFTPHV--DPELIE----------------AAVAQ--DI----PIIPG 111 (187)
T ss_pred CCcEEeEEE----EEcHHHHHHHHHc--CCCEEECCCC--CHHHHH----------------HHHHc--CC----CEEcC
Confidence 444333222 2345777777788 9999988732 222222 22333 33 36777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEe
Q 041524 420 FCGETEEEHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 420 ~PgET~ed~~~tl~~l~~l~~d~~~i~~ 447 (524)
-.|.+++.+.. +.+.|++.+|+
T Consensus 112 --~~t~~e~~~A~----~~Gadyv~~Fp 133 (187)
T PRK07455 112 --ALTPTEIVTAW----QAGASCVKVFP 133 (187)
T ss_pred --cCCHHHHHHHH----HCCCCEEEECc
Confidence 35777765544 47888888865
No 248
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=61.92 E-value=2.1e+02 Score=30.90 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=99.9
Q ss_pred cccCCC-CCccccCChHHHHHHHHHHHHC---CCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchh
Q 041524 251 CIVPFT-RGRERSRPVESIVKEVDELWKE---GVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGL 326 (524)
Q Consensus 251 C~vp~~-~G~~Rsr~~e~Iv~Ei~~l~~~---G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 326 (524)
|-.+.- .|.....+.++|.+-++.|..+ +...|.|.|...+. ..
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv--------------------------------r~ 125 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTL--------------------------------RD 125 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCccc--------------------------------hh
Confidence 544332 2333466788888888888765 45677777633221 24
Q ss_pred hHHHHHHHHHhhCCceEEEEec--CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHH
Q 041524 327 RFADLLDRLSLEFPEMRFRYTS--PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIR 404 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~~~ir~~s--~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir 404 (524)
++.++++...+. +...+.+.+ .+. ..+.++.+.++++ |.+.+.+.+.-.+++...++ .-++..+++.++
T Consensus 126 DL~eiv~~a~e~-g~~hVqinTnGirl-A~~~~~~~~l~~a--g~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r 196 (475)
T COG1964 126 DLIEIIKIAREE-GYDHVQLNTNGIRL-AFDPEYVKKLREA--GVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCR 196 (475)
T ss_pred hHHHHHHHHhhc-CccEEEEccCceee-ccCHHHHHHHHhc--CCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHH
Confidence 577887776654 333444433 221 2358999999999 99999999999999886666 344555999999
Q ss_pred HhCCC-cEEEEeEEEcCCCCCHHHHHHHHHHHHHc-C-CCeEEEEeee
Q 041524 405 QIIPD-VGLSSDFICGFCGETEEEHADTLTLMKAV-G-YDMAYMFAYS 449 (524)
Q Consensus 405 ~~~pg-i~i~~~fI~G~PgET~ed~~~tl~~l~~l-~-~d~~~i~~~s 449 (524)
+...+ +.+-..++=|. .+-++..-++|.... . +..+.+.++|
T Consensus 197 ~~g~~svVLVptl~rgv---Nd~~lG~iirfa~~n~dvVrgVnfQPVs 241 (475)
T COG1964 197 KAGLPSVVLVPTLIRGV---NDHELGAIIRFALNNIDVVRGVNFQPVS 241 (475)
T ss_pred hcCCCcEEEEeehhccc---ChHHHHHHHHHHHhccccccccceEEEE
Confidence 99322 55556666554 667777788887743 2 2334444444
No 249
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=60.70 E-value=64 Score=30.92 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=58.5
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..+.++.++-++.|.+.|++-+.++-.+ ....+.++.+.+..
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t------------------------------------~~a~~~I~~l~~~~ 57 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT------------------------------------PNALEAIEALRKEF 57 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS------------------------------------TTHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC------------------------------------ccHHHHHHHHHHHC
Confidence 467889999999999999999988776321 12456677777667
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
|.+.+...+. ++.+.++...++ |..++.-| ..++++++..++
T Consensus 58 p~~~vGAGTV----~~~e~a~~a~~a--GA~FivSP--~~~~~v~~~~~~ 99 (196)
T PF01081_consen 58 PDLLVGAGTV----LTAEQAEAAIAA--GAQFIVSP--GFDPEVIEYARE 99 (196)
T ss_dssp TTSEEEEES------SHHHHHHHHHH--T-SEEEES--S--HHHHHHHHH
T ss_pred CCCeeEEEec----cCHHHHHHHHHc--CCCEEECC--CCCHHHHHHHHH
Confidence 7777777653 578888888888 99888776 477777766543
No 250
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=60.55 E-value=2.3e+02 Score=30.35 Aligned_cols=145 Identities=12% Similarity=0.002 Sum_probs=86.3
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-.+.++++-++=++.|.+.|++.|.......+. .-.+.++.+....
T Consensus 18 g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~----------------------------------~~~~~~~~i~~~~ 63 (409)
T COG0119 18 GVSFSVEEKIRIAKALDDLGVDYIEAGFPVASP----------------------------------GDFEFVRAIAEKA 63 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCh----------------------------------hhHHHHHHHHHhc
Confidence 467889999999999999999998764322110 1122233333111
Q ss_pred Cc-eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC--CCCHHHHHHHHHHHHHhCCCcEEEEeE
Q 041524 340 PE-MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR--GYTREAYLDLVQKIRQIIPDVGLSSDF 416 (524)
Q Consensus 340 ~~-~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R--~~t~e~~~~~v~~ir~~~pgi~i~~~f 416 (524)
+. ...... .+. ...+.-++.+.++ |...+|+=+-+.+-.+-..+++ ....+.+.+.++.+++. |+.+..+.
T Consensus 64 ~~~~~~~~~-~~~-~~~~~~~ea~~~a--~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~--g~~~~~~~ 137 (409)
T COG0119 64 GLFICALIA-ALA-RAIKRDIEALLEA--GVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDH--GLEVRFSA 137 (409)
T ss_pred Ccccchhhh-hhH-HhHHhhHHHHHhC--CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 22 111111 111 1234467777777 8888887555544444444442 23567778888899998 88877666
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 417 ICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 417 I~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.-.+ .-+++.+.+.++.+...+.+.+.+
T Consensus 138 Ed~~-rt~~~~l~~~~~~~~~~ga~~i~l 165 (409)
T COG0119 138 EDAT-RTDPEFLAEVVKAAIEAGADRINL 165 (409)
T ss_pred eccc-cCCHHHHHHHHHHHHHcCCcEEEE
Confidence 6665 456666677777777666666554
No 251
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=59.52 E-value=94 Score=29.19 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHH
Q 041524 353 DFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTL 432 (524)
Q Consensus 353 ~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl 432 (524)
++-.++++...+. +.+...+| .+.+...++.+.+++.+||+.+.+. .|+ -++++-++.+
T Consensus 35 dl~~~l~~~~~~~--~~~vfllG---------------~~~~v~~~~~~~l~~~yP~l~i~g~--~g~--f~~~~~~~i~ 93 (177)
T TIGR00696 35 DLMEELCQRAGKE--KLPIFLYG---------------GKPDVLQQLKVKLIKEYPKLKIVGA--FGP--LEPEERKAAL 93 (177)
T ss_pred HHHHHHHHHHHHc--CCeEEEEC---------------CCHHHHHHHHHHHHHHCCCCEEEEE--CCC--CChHHHHHHH
Confidence 3445566655554 77777776 3456677788889999999987764 454 3456667789
Q ss_pred HHHHHcCCCeEEEEe
Q 041524 433 TLMKAVGYDMAYMFA 447 (524)
Q Consensus 433 ~~l~~l~~d~~~i~~ 447 (524)
+.|.+.++|.+.+..
T Consensus 94 ~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 94 AKIARSGAGIVFVGL 108 (177)
T ss_pred HHHHHcCCCEEEEEc
Confidence 999999999877655
No 252
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=59.28 E-value=88 Score=31.15 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE-------EcCCCC-----
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI-------CGFCGE----- 423 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI-------~G~PgE----- 423 (524)
++.++.++++ |+..|.+++...... +..+ ..+.++..++.+.+.+. |+.+.+--+ ++.|.+
T Consensus 19 ~e~l~~~~~~--G~~~VEl~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~~l~~~~~~~r~~ 91 (279)
T TIGR00542 19 LERLQLAKTC--GFDFVEMSVDETDDR-LSRL--DWSREQRLALVNAIIET--GVRIPSMCLSAHRRFPLGSKDKAVRQQ 91 (279)
T ss_pred HHHHHHHHHc--CCCEEEEecCCccch-hhcc--CCCHHHHHHHHHHHHHc--CCCceeeecCCCccCcCCCcCHHHHHH
Confidence 5667777777 777777765443211 1111 23556666666677777 666543211 111111
Q ss_pred CHHHHHHHHHHHHHcCCCeEEE
Q 041524 424 TEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 424 T~ed~~~tl~~l~~l~~d~~~i 445 (524)
..+.+++.++++..++...+.+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~ 113 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQL 113 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEe
Confidence 1223556666777777766644
No 253
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.26 E-value=1.7e+02 Score=28.16 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=54.3
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..++++.++-++.+.+.|++-|.++-.+ ....+.++++.+..
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iEit~~t------------------------------------p~a~~~I~~l~~~~ 53 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIEITLRT------------------------------------PAALDAIRAVAAEV 53 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC------------------------------------ccHHHHHHHHHHHC
Confidence 466789999999999999999987765321 12445666666655
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR 388 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~ 388 (524)
+.+.+...+. ++.+.++...++ |.+++.-| ..++++++..+
T Consensus 54 ~~~~vGAGTV----l~~e~a~~ai~a--GA~FivSP--~~~~~vi~~a~ 94 (201)
T PRK06015 54 EEAIVGAGTI----LNAKQFEDAAKA--GSRFIVSP--GTTQELLAAAN 94 (201)
T ss_pred CCCEEeeEeC----cCHHHHHHHHHc--CCCEEECC--CCCHHHHHHHH
Confidence 6655555432 455666666666 66665544 35555555443
No 254
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=59.11 E-value=3.1e+02 Score=31.00 Aligned_cols=204 Identities=15% Similarity=0.195 Sum_probs=106.6
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCE
Q 041524 84 YGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPK 163 (524)
Q Consensus 84 ~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 163 (524)
+|..|...|...|+..|.+.||.. ++....|- +.+|- +.-.+ .-|.+++.++. ..|+.+
T Consensus 20 ~~tr~~~~d~l~ia~~ld~~G~~s-iE~~GGat---f~~~~-~~~~e-~p~e~lr~l~~---------------~~~~~~ 78 (593)
T PRK14040 20 FATRLRLDDMLPIAAKLDKVGYWS-LESWGGAT---FDACI-RFLGE-DPWERLRELKK---------------AMPNTP 78 (593)
T ss_pred cccccCHHHHHHHHHHHHHcCCCE-EEecCCcc---hhhhc-cccCC-CHHHHHHHHHH---------------hCCCCe
Confidence 488999999999999999999975 44322211 11111 11111 23777777621 235565
Q ss_pred EEEE--c---ccccccHHHHHh------hCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCC
Q 041524 164 IVVL--G---CMAERLKDKILD------ADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKN 232 (524)
Q Consensus 164 Ivvg--G---~~at~~~e~~l~------~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~ 232 (524)
+.+. | ..-..+|+++.+ ...++|++-..++-.++..+...+..- +-...
T Consensus 79 lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~a--------------------k~~G~ 138 (593)
T PRK14040 79 QQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAV--------------------RKVGA 138 (593)
T ss_pred EEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHH--------------------HHcCC
Confidence 5432 2 112223444211 124577776666555554443333210 00000
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
...+.|. |...| ...++.+++-++.+.+.|+..|.|.|-. +..
T Consensus 139 ~~~~~i~----------yt~~p-------~~~~~~~~~~a~~l~~~Gad~i~i~Dt~-G~l------------------- 181 (593)
T PRK14040 139 HAQGTLS----------YTTSP-------VHTLQTWVDLAKQLEDMGVDSLCIKDMA-GLL------------------- 181 (593)
T ss_pred eEEEEEE----------EeeCC-------ccCHHHHHHHHHHHHHcCCCEEEECCCC-CCc-------------------
Confidence 0111111 11111 1257888888888888899999887632 211
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcCCcC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQTGN 380 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiESgs 380 (524)
.+..+.+|+.++.+.. ...+.+.+-+ ...-....+..+ ++ |+.+++..+....
T Consensus 182 -----------~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAi-eA--Ga~~vD~ai~glG 235 (593)
T PRK14040 182 -----------KPYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAI-EA--GIDGVDTAISSMS 235 (593)
T ss_pred -----------CHHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHH-Hc--CCCEEEecccccc
Confidence 1356888888887754 2445554211 111123344444 34 9999987776443
No 255
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=59.10 E-value=27 Score=33.06 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=27.2
Q ss_pred EEEEecCCCCCHHHHHHHHHHH-----HHCCCeeccCCCCCCcEEEEeeccCcch
Q 041524 79 IYQETYGCQMNVNDMEIVLSIM-----KNAGYSEVINVPENAEVIFINTCAIRDY 128 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~~L-----~~~Gy~~~~~~~~~aDvv~intc~v~~~ 128 (524)
+|+.++|+. ==|.|.+.... ...|... ...|.+||+++|. -+++.+
T Consensus 37 lw~~~~~~~--CC~iE~~~~~~~~yDieRfGi~~-~~sPr~aDvllV~-G~vt~~ 87 (183)
T PRK06411 37 LWPLTFGLA--CCAIEMMAAGTSRYDLDRFGMVF-RASPRQADLMIVA-GTLTNK 87 (183)
T ss_pred ccceeeCcc--HhHHHHHHccCccccHHHhCccc-cCCCCceeEEEEE-eCCCcc
Confidence 444444332 17788876543 3334432 4668899999994 455554
No 256
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=58.36 E-value=40 Score=31.37 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHH
Q 041524 350 HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHA 429 (524)
Q Consensus 350 ~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~ 429 (524)
...++-+++++.+.+. +.+...+| -+.+...++.+.+++.+||+.+....- | .-++++.+
T Consensus 32 ~g~dl~~~l~~~~~~~--~~~ifllG---------------~~~~~~~~~~~~l~~~yP~l~ivg~~~-g--~f~~~~~~ 91 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQR--GKRIFLLG---------------GSEEVLEKAAANLRRRYPGLRIVGYHH-G--YFDEEEEE 91 (172)
T ss_pred CHHHHHHHHHHHHHHc--CCeEEEEe---------------CCHHHHHHHHHHHHHHCCCeEEEEecC-C--CCChhhHH
Confidence 3445667777777666 78888887 345566777888999999986554322 1 12778888
Q ss_pred HHHHHHHHcCCCeEEEEeeec
Q 041524 430 DTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 430 ~tl~~l~~l~~d~~~i~~~sp 450 (524)
+.++.|.+.++|.+.+..=+|
T Consensus 92 ~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 92 AIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred HHHHHHHHcCCCEEEEECCCC
Confidence 899999999999877655333
No 257
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=56.96 E-value=1.2e+02 Score=30.17 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc---C-CCC--------
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG---F-CGE-------- 423 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G---~-PgE-------- 423 (524)
++.++.++++ |...|.+.+....... .. -.++.+...++-+.+++. |+.+.+-...+ + ++.
T Consensus 24 ~e~~~~~~~~--G~~~iEl~~~~~~~~~-~~--~~~~~~~~~~l~~~l~~~--gl~i~~~~~~~~~~~~~~~~~~~~r~~ 96 (283)
T PRK13209 24 LEKLAIAKTA--GFDFVEMSVDESDERL-AR--LDWSREQRLALVNALVET--GFRVNSMCLSAHRRFPLGSEDDAVRAQ 96 (283)
T ss_pred HHHHHHHHHc--CCCeEEEecCccccch-hc--cCCCHHHHHHHHHHHHHc--CCceeEEecccccccCCCCCCHHHHHH
Confidence 6788888888 9998888766533211 11 124666777777777788 88765432211 1 121
Q ss_pred CHHHHHHHHHHHHHcCCCeEEE
Q 041524 424 TEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 424 T~ed~~~tl~~l~~l~~d~~~i 445 (524)
..+.+++.++++..++...+.+
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~~ 118 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQL 118 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE
Confidence 1234667778888888887765
No 258
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=56.77 E-value=2.1e+02 Score=28.45 Aligned_cols=151 Identities=13% Similarity=0.136 Sum_probs=80.0
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.+..+++++++.++.+.+.|+.-|-+-+...+. |.+. .. ...-..++..+++.+.+..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p-------------~~~~-----i~----~~~E~~rl~~~v~~~~~~~ 74 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRP-------------GADR-----VS----PEEELNRVVPVIKALRDQP 74 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-------------CCCC-----CC----HHHHHHHHHHHHHHHHhcC
Confidence 345688999999999999999988774432211 1000 00 0001123555556555432
Q ss_pred CceEEEEecCCC-----------------CCC-CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC-CC----CHHHH
Q 041524 340 PEMRFRYTSPHP-----------------KDF-PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR-GY----TREAY 396 (524)
Q Consensus 340 ~~~~ir~~s~~p-----------------~~~-~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R-~~----t~e~~ 396 (524)
...+.+.+.+| ... +++++++++++ |+..+-+..+ +.++..+..-. .. -.+.+
T Consensus 75 -~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~--~~~vV~m~~~-g~p~~~~~~~~~~~~~~~~~~~~ 150 (257)
T TIGR01496 75 -DVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEY--GVPLVLMHMR-GTPRTMQENPHYEDVVEEVLRFL 150 (257)
T ss_pred -CCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHc--CCcEEEEeCC-CCCcccccCCCcccHHHHHHHHH
Confidence 23444444221 112 56677777777 6766665543 22221110000 00 11335
Q ss_pred HHHHHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHHHHHHHcC
Q 041524 397 LDLVQKIRQIIPDV---GLSSDFICGFCGETEEEHADTLTLMKAVG 439 (524)
Q Consensus 397 ~~~v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl~~l~~l~ 439 (524)
.+.++.+.+. |+ .+..|=.+||-. |.++-.++++-++.++
T Consensus 151 ~~~i~~~~~~--Gi~~~~iilDPg~gf~k-s~~~~~~~l~~i~~l~ 193 (257)
T TIGR01496 151 EARAEELVAA--GVAAERIILDPGIGFGK-TPEHNLELLKHLEEFV 193 (257)
T ss_pred HHHHHHHHHc--CCCHHHEEEECCCCccc-CHHHHHHHHHHHHHHH
Confidence 5666777887 87 466777778744 6666666666665553
No 259
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=56.35 E-value=13 Score=33.88 Aligned_cols=45 Identities=18% Similarity=0.399 Sum_probs=27.8
Q ss_pred EEEEecC--CCCCHHHHHHHHHH-----HHHCC-CeeccCCCCCCcEEEEeeccCcchH
Q 041524 79 IYQETYG--CQMNVNDMEIVLSI-----MKNAG-YSEVINVPENAEVIFINTCAIRDYA 129 (524)
Q Consensus 79 ~~~~t~G--C~~N~~d~e~i~~~-----L~~~G-y~~~~~~~~~aDvv~intc~v~~~a 129 (524)
+|+..+| | -|.|.+... +.+.| ... +..|.+||+.+| |-+++.+.
T Consensus 19 ~w~~~~~t~c----C~iE~~~~~~~~~D~erfG~i~~-~~sPr~aDvllV-tG~vt~~~ 71 (145)
T TIGR01957 19 LWPLTFGLAC----CAIEMMATGASRYDLDRFGSEVF-RASPRQADVMIV-AGTVTKKM 71 (145)
T ss_pred ceeeeeCccH----HHHHHHHccCccccHHHhCCcee-cCCCCcceEEEE-ecCCcHHH
Confidence 4444444 5 677777654 34445 332 467889999999 55666653
No 260
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=56.30 E-value=31 Score=33.28 Aligned_cols=150 Identities=13% Similarity=0.155 Sum_probs=81.3
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE 341 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 341 (524)
..+.+..+++++.+.+.|..-|-+-++...-+ ..+ . .....-.++..+++.+.+....
T Consensus 15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~-------------~~~-----v----~~~eE~~rl~~~l~~i~~~~~~ 72 (210)
T PF00809_consen 15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPG-------------ATP-----V----SEEEEMERLVPVLQAIREENPD 72 (210)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTT-------------SSS-----S----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecccccCCC-------------CCc-----C----CHHHHHHHHHHHHHHHhccCCC
Confidence 34567888889999999999887765543222 000 0 0011123456666666642234
Q ss_pred eEEEEecCCC-----------------C--CCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC-CC----HHHHH
Q 041524 342 MRFRYTSPHP-----------------K--DFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG-YT----REAYL 397 (524)
Q Consensus 342 ~~ir~~s~~p-----------------~--~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~-~t----~e~~~ 397 (524)
..+.+.+.+| . ..+++++++++++ |+..|-+........+-+..... .- .+.+.
T Consensus 73 ~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~--~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (210)
T PF00809_consen 73 VPLSIDTFNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEY--GAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLE 150 (210)
T ss_dssp SEEEEEESSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHH--TSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHcCcceEEecccccccchhhhhhhcC--CCEEEEEecccccccccccchhhhhHHHHHHHHHH
Confidence 5565555332 1 1157788888887 77766665551111100000000 00 12333
Q ss_pred HHHHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 398 DLVQKIRQIIPDV---GLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 398 ~~v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
+.++.+.++ |+ .|..|-.+|| +-+.+.-.++++.+..+
T Consensus 151 ~~i~~l~~~--Gi~~~~Ii~DPgigf-~~~~~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 151 ERIEALEKA--GIPRERIILDPGIGF-GKDPEQNLELLRNIEEL 191 (210)
T ss_dssp HHHHHHHHT--T--GGGEEEETTTTS-STTHHHHHHHHHTHHHH
T ss_pred HHHHHHHHc--CCCHHHEeeccccCc-CCCHHHHHHHHHHHHHH
Confidence 444445557 87 6899999999 77777766677666664
No 261
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=54.96 E-value=1.2e+02 Score=33.56 Aligned_cols=214 Identities=12% Similarity=0.058 Sum_probs=106.1
Q ss_pred EEEEEc-ccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCC-cc-cc--CCCe---
Q 041524 163 KIVVLG-CMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISP-VR-IS--KNSV--- 234 (524)
Q Consensus 163 ~IvvgG-~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p-~r-~~--~~~~--- 234 (524)
.|+|-| |-. ..+.+-+ .-++-+.-|++.-.++|.++..+..|....... +.++-+....- .+ +. ....
T Consensus 63 ~ilvpG~~~g--d~~~i~~-~~Gi~~~kGp~~~~Dlp~~l~~~~~g~~lS~~~-pAd~~~~~~~~~~~~~~~~e~~~~~~ 138 (499)
T TIGR00284 63 ILLIPGLVRG--DAKVVEE-VTGRPVFKGTVEAVDIPDIIEILRSGIKLSTEE-PADEVVLEIKKLEEYTSKIEEREADF 138 (499)
T ss_pred EEEeCCCccC--CHHHHHH-HhCCCEEECCcCHHHHHHHHHhhcccccCCCCC-cHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 455555 433 3445443 357888999999999999999987754321111 11100000000 00 00 0000
Q ss_pred -EEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 235 -TAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 235 -~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..-+.+++++|-+=-|=-+. ... ..+.|++.++.+.+.|+.-|-+-+....
T Consensus 139 ~i~~~~i~~~~p~~~v~aEI~---~a~---~l~~i~~~A~~~~~~GADIIDIG~~st~---------------------- 190 (499)
T TIGR00284 139 RIGSLKIPLKPPPLRVVAEIP---PTV---AEDGIEGLAARMERDGADMVALGTGSFD---------------------- 190 (499)
T ss_pred hccCcCCCCCCCCeEEEEEEc---CCc---chHHHHHHHHHHHHCCCCEEEECCCcCC----------------------
Confidence 00122233321110111110 011 1288999999999999886655432210
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCC------------------CCHHHHHHHHcCCCCcceeecC
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKD------------------FPDELLYIMRDRPNVCKYIHLP 375 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~------------------~~~elL~~l~~~~~G~~~i~ig 375 (524)
+...++..+++.+.... ...+.+.|.+|.. -.++++.++++. |+..+-+.
T Consensus 191 ---------p~~~~v~~~V~~l~~~~-~~pISIDT~~~~v~eaAL~aGAdiINsVs~~~~d~~~~l~a~~--g~~vVlm~ 258 (499)
T TIGR00284 191 ---------DDPDVVKEKVKTALDAL-DSPVIADTPTLDELYEALKAGASGVIMPDVENAVELASEKKLP--EDAFVVVP 258 (499)
T ss_pred ---------CcHHHHHHHHHHHHhhC-CCcEEEeCCCHHHHHHHHHcCCCEEEECCccchhHHHHHHHHc--CCeEEEEc
Confidence 01234666666665532 2345555432210 012344444444 45554444
Q ss_pred cCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCc-EEEEeEEEcCCCCCHHHHHHHHHHHH
Q 041524 376 AQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDV-GLSSDFICGFCGETEEEHADTLTLMK 436 (524)
Q Consensus 376 iESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi-~i~~~fI~G~PgET~ed~~~tl~~l~ 436 (524)
.+ .....+...+.++.+++. |+ .+..|=++|+++. .+.++++-+.
T Consensus 259 ~~-----------~~~~~~~l~~~ie~a~~~--Gi~~IIlDPglg~~~~---~l~~sL~~l~ 304 (499)
T TIGR00284 259 GN-----------QPTNYEELAKAVKKLRTS--GYSKVAADPSLSPPLL---GLLESIIRFR 304 (499)
T ss_pred CC-----------CCchHHHHHHHHHHHHHC--CCCcEEEeCCCCcchH---HHHHHHHHHH
Confidence 22 122347788889999999 88 7888888887432 3555555554
No 262
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=54.74 E-value=2.1e+02 Score=27.81 Aligned_cols=136 Identities=12% Similarity=0.034 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEE
Q 041524 265 VESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRF 344 (524)
Q Consensus 265 ~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~i 344 (524)
.++.++-++.+.+.|+.++.++|-+-..+ +. ....++++++.+... ..+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~------------~~------------------~~~~~~i~~i~~~~~-~pv 74 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSE------------GR------------------ETMLDVVERVAEEVF-IPL 74 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccc------------cC------------------cccHHHHHHHHHhCC-CCE
Confidence 34666666777778999999997553211 10 113456666655432 222
Q ss_pred EEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc-----
Q 041524 345 RYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG----- 419 (524)
Q Consensus 345 r~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G----- 419 (524)
-.. -..-+.+.++.+.+. ||..+.+|-... .+.+.+.++++.+.+. .+.++.|+-.+
T Consensus 75 ~~~---GGI~s~~d~~~~l~~--G~~~v~ig~~~~-----------~~p~~~~~i~~~~~~~--~i~~~ld~k~~~~~~~ 136 (243)
T cd04731 75 TVG---GGIRSLEDARRLLRA--GADKVSINSAAV-----------ENPELIREIAKRFGSQ--CVVVSIDAKRRGDGGY 136 (243)
T ss_pred EEe---CCCCCHHHHHHHHHc--CCceEEECchhh-----------hChHHHHHHHHHcCCC--CEEEEEEeeecCCCce
Confidence 121 122345555555556 899998883321 1234444444444322 36677775433
Q ss_pred ------CCCCCHHHHHHHHHHHHHcCCCeEEEEeee
Q 041524 420 ------FCGETEEEHADTLTLMKAVGYDMAYMFAYS 449 (524)
Q Consensus 420 ------~PgET~ed~~~tl~~l~~l~~d~~~i~~~s 449 (524)
-+.+|..+..+.+..+.+.+++.+-+....
T Consensus 137 ~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~ 172 (243)
T cd04731 137 EVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMD 172 (243)
T ss_pred EEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccC
Confidence 334556666666677788899987776644
No 263
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=54.64 E-value=2.4e+02 Score=28.46 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHHHCC-----CcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 264 PVESIVKEVDELWKEG-----VKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G-----~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
+.++=++-++.|.+.| +++|.+. ++ . ...+.++...+...
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~-----s~------------~------------------~~d~~~v~~~~~~~ 63 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFF-----LY------------T------------------EKDREAVEACLDRG 63 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEec-----Cc------------C------------------hHHHHHHHHHHHcC
Confidence 8888889999999999 9999862 22 0 01233333333221
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh-hhCCC--CCHHHHHHHHHHHHHhCCCcEEEEe
Q 041524 339 FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE-RMRRG--YTREAYLDLVQKIRQIIPDVGLSSD 415 (524)
Q Consensus 339 ~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~-~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~ 415 (524)
.....+... .+| +.+-++...++ |+..+++-+ |.|+..++ .+++. ...+.+.+.++.+++. |+.+..+
T Consensus 64 ~~~~~v~~~-~r~---~~~die~A~~~--g~~~v~i~~-s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~--g~~v~~~ 134 (279)
T cd07947 64 YKFPEVTGW-IRA---NKEDLKLVKEM--GLKETGILM-SVSDYHIFKKLKMTREEAMEKYLEIVEEALDH--GIKPRCH 134 (279)
T ss_pred CCCCEEEEE-ecC---CHHHHHHHHHc--CcCEEEEEE-cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHC--CCeEEEE
Confidence 101233222 333 44556777777 999999866 66766554 56654 3566777888888888 8776655
Q ss_pred EEEcCCCCCHHH--------HHHHHHHHHHcCCC-eEEE
Q 041524 416 FICGFCGETEEE--------HADTLTLMKAVGYD-MAYM 445 (524)
Q Consensus 416 fI~G~PgET~ed--------~~~tl~~l~~l~~d-~~~i 445 (524)
+ -+.+..+ +.+.++.+.+.+.+ .+.+
T Consensus 135 ~----ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l 169 (279)
T cd07947 135 L----EDITRADIYGFVLPFVNKLMKLSKESGIPVKIRL 169 (279)
T ss_pred E----EcccCCCcccchHHHHHHHHHHHHHCCCCEEEEe
Confidence 5 2333332 33444445556777 4443
No 264
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=53.89 E-value=26 Score=33.87 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=46.4
Q ss_pred CCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCC
Q 041524 114 NAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDA 193 (524)
Q Consensus 114 ~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~geg 193 (524)
+.|+|+++..+..+..-..+.++.+ ...-|++.||-|+.+||-+.. -+|+.+.+-+-
T Consensus 164 ~~Dvii~SaStlvN~T~d~~Ld~ak---------------------~ak~vvl~GPTa~l~pe~f~~--~gvt~iag~kI 220 (250)
T COG2014 164 EVDVIIASASTLVNGTLDMILDRAK---------------------KAKLVVLTGPTAQLLPEFFKG--TGVTHIAGTKI 220 (250)
T ss_pred cccEEEEechhhhcCcHHHHHhhhc---------------------cCcEEEEeCCCcccchhHHhc--cCcceEEeeee
Confidence 7799999887777766665555432 234688999999999999876 47999887543
Q ss_pred cccHHHHHHHH
Q 041524 194 YRDLPRLLEEV 204 (524)
Q Consensus 194 e~~l~~Ll~~~ 204 (524)
.+....|-.+
T Consensus 221 -iDp~~~L~kl 230 (250)
T COG2014 221 -IDPDKALLKL 230 (250)
T ss_pred -cCHHHHHHHh
Confidence 3334444333
No 265
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=53.76 E-value=15 Score=35.67 Aligned_cols=29 Identities=21% Similarity=0.558 Sum_probs=22.7
Q ss_pred HHHHHHHHHHCCCeeccCC----C----------CCCcEEEEee
Q 041524 93 MEIVLSIMKNAGYSEVINV----P----------ENAEVIFINT 122 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~----~----------~~aDvv~int 122 (524)
-.++...|..+||++ ++- | .+||+|..++
T Consensus 121 k~iV~~ml~~aGfev-idLG~dvP~e~fve~a~e~k~d~v~~Sa 163 (227)
T COG5012 121 KNIVATMLEAAGFEV-IDLGRDVPVEEFVEKAKELKPDLVSMSA 163 (227)
T ss_pred HHHHHHHHHhCCcEE-EecCCCCCHHHHHHHHHHcCCcEEechH
Confidence 678999999999986 322 1 4899999965
No 266
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=53.35 E-value=59 Score=26.97 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHH
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k 469 (524)
.+.+....+.+++..|+..+..-|+-+ +.-++.+.++-+.+.+.+.+.+.+|-..+|.+... ++|..+.
T Consensus 15 ~~~~~~l~~~l~~~~~~~~v~~afle~----~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~----dip~~~~ 83 (101)
T cd03416 15 AEALEALAERLRERLPGDEVELAFLEL----AEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKE----DIPAALA 83 (101)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEEc----CCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccc----cHHHHHH
Confidence 346777788888876666677666643 34456667778888899999999999999987753 5555554
No 267
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=53.31 E-value=2.4e+02 Score=28.06 Aligned_cols=148 Identities=15% Similarity=0.180 Sum_probs=77.0
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+.+.+++.++.+.+.|..-|-+-+...+.. .+. .. ......++..+++.+.+..
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~-------------~~~-----i~----~~~E~~rl~~~v~~i~~~~- 75 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRPG-------------ADP-----VS----VEEELERVIPVLEALRGEL- 75 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCC-------------CCC-----CC----HHHHHHHHHHHHHHHHhcC-
Confidence 446889999999999999998777654433211 000 00 0111134444556655432
Q ss_pred ceEEEEecCCC-------------------CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC------CHHH
Q 041524 341 EMRFRYTSPHP-------------------KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY------TREA 395 (524)
Q Consensus 341 ~~~ir~~s~~p-------------------~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~------t~e~ 395 (524)
...+.+.+.+| ...+++++++++++ ||..+-+..+ +.++..... -.| -.+.
T Consensus 76 ~~plSIDT~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~--~~~vV~m~~~-g~p~~~~~~-~~~~~~~~~~~~~ 151 (257)
T cd00739 76 DVLISVDTFRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEY--GAPLVLMHMR-GTPKTMQEN-PYYEDVVDEVLSF 151 (257)
T ss_pred CCcEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHc--CCCEEEECCC-CCCcccccC-CCcccHHHHHHHH
Confidence 22344443221 11225667777776 6666665543 222211100 001 0133
Q ss_pred HHHHHHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 396 YLDLVQKIRQIIPDV---GLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 396 ~~~~v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
+.+.++.+.+. |+ .+..|=.+|| +.|.+.-.++++-++.+
T Consensus 152 ~~~~i~~~~~~--Gi~~~~Ii~DPg~gf-~ks~~~~~~~l~~i~~l 194 (257)
T cd00739 152 LEARLEAAESA--GVARNRIILDPGIGF-GKTPEHNLELLRRLDEL 194 (257)
T ss_pred HHHHHHHHHHc--CCCHHHEEEecCCCc-ccCHHHHHHHHHHHHHH
Confidence 55666777787 87 5778887887 55555444555444443
No 268
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=53.28 E-value=85 Score=31.75 Aligned_cols=126 Identities=18% Similarity=0.276 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
...+.+.+-+++..+.|++-+.+.++-+... .++...|.. ...+.+.++++.+.....
T Consensus 42 ~Nl~~l~~~L~~n~~~~I~~yRisS~liP~a---------shp~~~~~~-------------~~~~~~~l~~iG~~~~~~ 99 (275)
T PF03851_consen 42 QNLEDLLRILEYNIAHGIRFYRISSDLIPLA---------SHPEVGWDW-------------EEEFAEELAEIGDLAKEN 99 (275)
T ss_dssp HHHHHHHHHHHHHHHTT--EEE--TTSSTTT---------TSTT--S-H-------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCEEecCcccCCCC---------CCcccccch-------------HHHHHHHHHHHHHHHHHc
Confidence 3456666677777788998888887655543 111111211 124566666666554344
Q ss_pred EEEEecCCCCCCC--------------------HHHHHHHHcCCC--CcceeecCcC----------------CcCHHHH
Q 041524 343 RFRYTSPHPKDFP--------------------DELLYIMRDRPN--VCKYIHLPAQ----------------TGNSAVL 384 (524)
Q Consensus 343 ~ir~~s~~p~~~~--------------------~elL~~l~~~~~--G~~~i~igiE----------------Sgs~~vL 384 (524)
.+|++ .||+.+. .++|++|--.+. ..--||+|=- ..++.+.
T Consensus 100 ~iRls-~HP~qf~vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~al~RF~~~~~~L~~~ir 178 (275)
T PF03851_consen 100 GIRLS-MHPDQFTVLNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAALERFIENFKRLPESIR 178 (275)
T ss_dssp T-EEE-E---TT--TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHHHHHHHHHHHT--HHHH
T ss_pred CCeEE-ecCCcceeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHHHHHHHHHHhhCCHhhh
Confidence 55665 6776653 334455532211 2346899833 4455555
Q ss_pred hhh-----CCCCCHHHHHHHHHHHHHhCCCcEEEEeE
Q 041524 385 ERM-----RRGYTREAYLDLVQKIRQIIPDVGLSSDF 416 (524)
Q Consensus 385 ~~m-----~R~~t~e~~~~~v~~ir~~~pgi~i~~~f 416 (524)
+++ .|.||.++++. .+.+. ||.+..|+
T Consensus 179 ~rL~lENDd~~yt~~d~L~---ic~~~--giP~VfD~ 210 (275)
T PF03851_consen 179 KRLTLENDDKTYTVEDVLP---ICEKL--GIPMVFDY 210 (275)
T ss_dssp TTEEEE--SSS--HHHHHH---HHHHH--T--EEEEH
T ss_pred hcEEEecCCCccCHHHHHH---HHHHh--CCCEEEEh
Confidence 554 25566665554 44555 77766654
No 269
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=53.27 E-value=33 Score=35.47 Aligned_cols=85 Identities=25% Similarity=0.406 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh-CCCCCHHHHHHHHHHHHHhC--CCcEEEEeEEEcCCC---
Q 041524 349 PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM-RRGYTREAYLDLVQKIRQII--PDVGLSSDFICGFCG--- 422 (524)
Q Consensus 349 ~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m-~R~~t~e~~~~~v~~ir~~~--pgi~i~~~fI~G~Pg--- 422 (524)
.||..+++|.++++++. .|+-.+.+- +..+..- ....+.+++.+-++.+.+.. ..+.+.+|| -|.++
T Consensus 209 ~h~RNltDe~iraia~~-GGviGi~~~-----~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDf-dg~~~~~~ 281 (320)
T PF01244_consen 209 PHPRNLTDEQIRAIAER-GGVIGINFY-----PAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSDF-DGIDGPPE 281 (320)
T ss_dssp --TTSB-HHHHHHHHHT-T-EEEEESS-----HHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--B-TTTSSHBB
T ss_pred CCCCCCCHHHHHHHHHC-CcEEEEEcc-----hhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECccc-CCCCCCCC
Confidence 57888999999999986 455555432 2222221 34568888888888888863 235788888 34332
Q ss_pred --CCHHHHHHHHHHHHHcCC
Q 041524 423 --ETEEEHADTLTLMKAVGY 440 (524)
Q Consensus 423 --ET~ed~~~tl~~l~~l~~ 440 (524)
++..++....+.+.+.++
T Consensus 282 gl~~~~~~~~l~~~L~~rG~ 301 (320)
T PF01244_consen 282 GLEDPSDLPNLTEELLKRGY 301 (320)
T ss_dssp TBSSGGGHHHHHHHHHHTTS
T ss_pred ccCCHHHHHHHHHHHHHCCC
Confidence 244555555555554443
No 270
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.76 E-value=1.3e+02 Score=29.23 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=58.3
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..++++.++-++.+.+.|++-|.+. ++.. ...+.++.+.+..
T Consensus 21 ~r~~~~~~a~~i~~al~~~Gi~~iEit---l~~~---------------------------------~~~~~I~~l~~~~ 64 (212)
T PRK05718 21 IVINKLEDAVPLAKALVAGGLPVLEVT---LRTP---------------------------------AALEAIRLIAKEV 64 (212)
T ss_pred EEcCCHHHHHHHHHHHHHcCCCEEEEe---cCCc---------------------------------cHHHHHHHHHHHC
Confidence 477899999999999999999987776 2211 2455666666666
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
|...+...+. ++++.++...++ |..++..+ ..++++++..++
T Consensus 65 p~~~IGAGTV----l~~~~a~~a~~a--GA~FivsP--~~~~~vi~~a~~ 106 (212)
T PRK05718 65 PEALIGAGTV----LNPEQLAQAIEA--GAQFIVSP--GLTPPLLKAAQE 106 (212)
T ss_pred CCCEEEEeec----cCHHHHHHHHHc--CCCEEECC--CCCHHHHHHHHH
Confidence 7666655432 456677777777 77777665 356666665544
No 271
>PLN02321 2-isopropylmalate synthase
Probab=51.03 E-value=3.5e+02 Score=30.81 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=23.4
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEE
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLL 286 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~ 286 (524)
-.+.+.++-++-++.|.+.|++.|...
T Consensus 102 g~~~s~eeKl~Ia~~L~~lGVd~IEvG 128 (632)
T PLN02321 102 GATLTSKEKLDIARQLAKLGVDIIEAG 128 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 456899999999999999999999863
No 272
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=50.55 E-value=1e+02 Score=30.25 Aligned_cols=132 Identities=10% Similarity=0.113 Sum_probs=76.0
Q ss_pred cCChHHHHHHHHHHHHCCCcEEE--EEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVT--LLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~--l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
+-+.-.+-+|++.+.+ |+..+. +.|.+|--. +.+ +. +.++.+.+..
T Consensus 11 ~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN---------------~tf-------------g~---~~i~~ir~~t 58 (229)
T PRK09722 11 CMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPN---------------LTL-------------SP---FFVSQVKKLA 58 (229)
T ss_pred hcCHHHHHHHHHHHHh-CCCEEEEecccCccCCC---------------ccc-------------CH---HHHHHHHhcC
Confidence 4456778899999877 877655 456554321 000 11 2334444321
Q ss_pred -CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 340 -PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 340 -~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
-.+.+.+...+ ++..++.+.++ |+..|.+-+|+... ...+.++.+|+. |+.. .+-+
T Consensus 59 ~~~~DvHLMv~~----P~~~i~~~~~a--Gad~it~H~Ea~~~-------------~~~~~i~~Ik~~--G~ka--Glal 115 (229)
T PRK09722 59 SKPLDVHLMVTD----PQDYIDQLADA--GADFITLHPETING-------------QAFRLIDEIRRA--GMKV--GLVL 115 (229)
T ss_pred CCCeEEEEEecC----HHHHHHHHHHc--CCCEEEECccCCcc-------------hHHHHHHHHHHc--CCCE--EEEe
Confidence 12344444333 46799999999 99999999996431 244677888888 6543 2333
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
. |+-..+.+...+. . +|.+- .++..||-.-
T Consensus 116 n-P~T~~~~l~~~l~---~--vD~VL--vMsV~PGf~G 145 (229)
T PRK09722 116 N-PETPVESIKYYIH---L--LDKIT--VMTVDPGFAG 145 (229)
T ss_pred C-CCCCHHHHHHHHH---h--cCEEE--EEEEcCCCcc
Confidence 3 6655555554443 2 35443 3456677543
No 273
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=50.34 E-value=86 Score=30.09 Aligned_cols=163 Identities=13% Similarity=0.184 Sum_probs=91.2
Q ss_pred cCChHHHHHHHHHHHHCCCcEEE--EEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVT--LLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~--l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
+-+.-.+.+|++.+.+.|+..+. +.|.+|--. +.+ -.++++.+.+..
T Consensus 8 ~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn---------------~~~----------------g~~~i~~i~~~~ 56 (201)
T PF00834_consen 8 SADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN---------------LTF----------------GPDIIKAIRKIT 56 (201)
T ss_dssp GS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS---------------B-B-----------------HHHHHHHHTTS
T ss_pred hCCHHHHHHHHHHHHHcCCCEEEEeecccccCCc---------------ccC----------------CHHHHHHHhhcC
Confidence 45667889999999999988655 566555321 000 134455555542
Q ss_pred -CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 340 -PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 340 -~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
-.+.+.+...+| +..++.++++ |+.++++-+|+.+ ...+.++.+|+. |+....-+-
T Consensus 57 ~~~~DvHLMv~~P----~~~i~~~~~~--g~~~i~~H~E~~~--------------~~~~~i~~ik~~--g~k~Gialn- 113 (201)
T PF00834_consen 57 DLPLDVHLMVENP----ERYIEEFAEA--GADYITFHAEATE--------------DPKETIKYIKEA--GIKAGIALN- 113 (201)
T ss_dssp SSEEEEEEESSSG----GGHHHHHHHH--T-SEEEEEGGGTT--------------THHHHHHHHHHT--TSEEEEEE--
T ss_pred CCcEEEEeeeccH----HHHHHHHHhc--CCCEEEEcccchh--------------CHHHHHHHHHHh--CCCEEEEEE-
Confidence 124555554454 5689999999 9999999999643 355678889998 876544443
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEE
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLV 498 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~~~~~~~~~~~~~~vG~~~~v 498 (524)
|+...+.++. ++. .+|.+-+ ++..||..-.. ..+ ..-+|++++.+...+. |....+
T Consensus 114 --P~T~~~~~~~---~l~--~vD~Vlv--MsV~PG~~Gq~----f~~--~~~~KI~~l~~~~~~~---------~~~~~I 169 (201)
T PF00834_consen 114 --PETPVEELEP---YLD--QVDMVLV--MSVEPGFGGQK----FIP--EVLEKIRELRKLIPEN---------GLDFEI 169 (201)
T ss_dssp --TTS-GGGGTT---TGC--CSSEEEE--ESS-TTTSSB------HG--GHHHHHHHHHHHHHHH---------TCGSEE
T ss_pred --CCCCchHHHH---Hhh--hcCEEEE--EEecCCCCccc----ccH--HHHHHHHHHHHHHHhc---------CCceEE
Confidence 5544444432 222 3675544 56777854322 222 2334555555444332 234466
Q ss_pred EEec
Q 041524 499 LVEG 502 (524)
Q Consensus 499 Lve~ 502 (524)
-|+|
T Consensus 170 ~vDG 173 (201)
T PF00834_consen 170 EVDG 173 (201)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7776
No 274
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=50.29 E-value=36 Score=33.15 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=28.9
Q ss_pred EEEEecCCCCCHHHHHHHHH-----HHHHCCCeeccCCCCCCcEEEEeeccCcch
Q 041524 79 IYQETYGCQMNVNDMEIVLS-----IMKNAGYSEVINVPENAEVIFINTCAIRDY 128 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~-----~L~~~Gy~~~~~~~~~aDvv~intc~v~~~ 128 (524)
+|..++|+.= =|.|.++. -+.+.|+.. +..|.+||++++ |-+++.+
T Consensus 34 lw~~~~g~sC--C~iE~~a~~~p~yDleRfGi~~-~aSPRhADvliV-tG~VT~k 84 (225)
T CHL00023 34 LWPLLYGTSC--CFIEFASLIGSRFDFDRYGLVP-RSSPRQADLILT-AGTVTMK 84 (225)
T ss_pred cccccCCcch--HHHHHHHhCCCccCHHHcCCee-cCCcccceEEEE-ecCCccc
Confidence 4444454321 67777654 355667654 678899999999 4555553
No 275
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=50.11 E-value=44 Score=27.53 Aligned_cols=62 Identities=10% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
.+.+.+..+.+++..|+..+..-|..+ +.-++.+.++-+.+.+++.+.+.++.+.+|.....
T Consensus 16 ~~~~~~~~~~l~~~~~~~~v~~a~~~~----~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~~~ 77 (101)
T cd03409 16 KKDIEAQAHNLAESLPDFPYYVGFQSG----LGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEVFY 77 (101)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHHHHHHcCCCeEEEEeCccccChhhHH
Confidence 456777778887876665555555554 23456677888888899999999999998877653
No 276
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.83 E-value=92 Score=32.62 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=54.3
Q ss_pred CcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Q 041524 368 VCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 368 G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~ 447 (524)
|...|.+|.+-.+ ++.-...++.+++.+.++.++++ |..+..-+=.-+-.+..+.+.+.++.+.++++|.+-+.-
T Consensus 26 GADaVY~G~~~~~---~R~~a~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~D 100 (347)
T COG0826 26 GADAVYIGEKEFG---LRRRALNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVAD 100 (347)
T ss_pred CCCEEEeCCcccc---cccccccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcC
Confidence 8999999987333 22222458999999999999999 765443322222345666789999999999999876654
No 277
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=49.72 E-value=1.6e+02 Score=32.22 Aligned_cols=123 Identities=13% Similarity=0.102 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEE
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR 345 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir 345 (524)
+++.+-++.|.++|++-|.+-.-+ |. ...+.++++.+....+...+-
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~----------------g~-----------------~~~~~~~i~~i~~~~~~~~vi 270 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAH----------------GH-----------------QVKMISAIKAVRALDLGVPIV 270 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCC----------------CC-----------------cHHHHHHHHHHHHHCCCCeEE
Confidence 466778888999999987663211 21 246888899998876655443
Q ss_pred EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC-C-CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC
Q 041524 346 YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR-G-YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGE 423 (524)
Q Consensus 346 ~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R-~-~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE 423 (524)
.. ...+.+-...+.++ |+..|.+|+-+|+.-+++.+.- | .+...+.++.+.+++. ++.+.+|= |+ .
T Consensus 271 ~g----~~~t~~~~~~l~~~--G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadG--gi--~ 338 (475)
T TIGR01303 271 AG----NVVSAEGVRDLLEA--GANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--GGHVWADG--GV--R 338 (475)
T ss_pred Ee----ccCCHHHHHHHHHh--CCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc--CCcEEEeC--CC--C
Confidence 32 23577888888888 9999999999999887664422 2 2567788888888887 76655542 11 3
Q ss_pred CHHHHHHHHH
Q 041524 424 TEEEHADTLT 433 (524)
Q Consensus 424 T~ed~~~tl~ 433 (524)
+..|+.+.+.
T Consensus 339 ~~~di~kala 348 (475)
T TIGR01303 339 HPRDVALALA 348 (475)
T ss_pred CHHHHHHHHH
Confidence 5666665544
No 278
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=49.52 E-value=63 Score=34.38 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHHh
Q 041524 391 YTREAYLDLVQKIRQI 406 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~ 406 (524)
.+.+++.+.-+.+.++
T Consensus 40 W~~~~i~~~k~~ie~~ 55 (394)
T TIGR00695 40 WEKEEIRKRKEYIESA 55 (394)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 3445555555555444
No 279
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.49 E-value=2.5e+02 Score=27.06 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=55.8
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..++++.++-++.|.+.|++-+.++-.+ ....+.++++.+..
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t------------------------------------~~a~~~i~~l~~~~ 57 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTLRT------------------------------------PVALDAIRLLRKEV 57 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeCCC------------------------------------ccHHHHHHHHHHHC
Confidence 466789999999999999999987765311 12455666676666
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m 387 (524)
+...+...+ -++.+.++...++ |..++.-| ..++++++..
T Consensus 58 ~~~~vGAGT----Vl~~~~a~~a~~a--GA~FivsP--~~~~~v~~~~ 97 (204)
T TIGR01182 58 PDALIGAGT----VLNPEQLRQAVDA--GAQFIVSP--GLTPELAKHA 97 (204)
T ss_pred CCCEEEEEe----CCCHHHHHHHHHc--CCCEEECC--CCCHHHHHHH
Confidence 665555553 2567777777777 77776433 2355555443
No 280
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=49.06 E-value=73 Score=30.09 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=25.9
Q ss_pred ecCCCCCHHHHHHHHHHH-----HHCCCeeccCCCCCCcEEEEeeccCcchH
Q 041524 83 TYGCQMNVNDMEIVLSIM-----KNAGYSEVINVPENAEVIFINTCAIRDYA 129 (524)
Q Consensus 83 t~GC~~N~~d~e~i~~~L-----~~~Gy~~~~~~~~~aDvv~intc~v~~~a 129 (524)
..|| =|.|.+.... ...|.......+.+||++++. -+++.+.
T Consensus 41 ~~sC----C~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillVe-G~VT~~m 87 (180)
T PRK14820 41 ATSC----CGIEFMATMASHYDLARFGSERPSFSPRQADMLMVM-GTIAKKM 87 (180)
T ss_pred cccH----HHHHHHHhcCccccHHHhCccccCCCCccceEEEEE-ecCCccc
Confidence 3367 8888877643 333442224668999999994 4455443
No 281
>PRK00957 methionine synthase; Provisional
Probab=48.85 E-value=1.7e+02 Score=29.65 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHCCCcEEEEE
Q 041524 265 VESIVKEVDELWKEGVKEVTLL 286 (524)
Q Consensus 265 ~e~Iv~Ei~~l~~~G~kei~l~ 286 (524)
.+.+.++++.+.+.|++.|.+-
T Consensus 143 a~~~~~~i~~l~~~G~~~IqiD 164 (305)
T PRK00957 143 ARALRKEAEALEKAGVAMIQID 164 (305)
T ss_pred HHHHHHHHHHHHHcCCCEEEec
Confidence 4566677788888899655553
No 282
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=48.09 E-value=1.4e+02 Score=29.03 Aligned_cols=141 Identities=12% Similarity=0.072 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEE
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR 345 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir 345 (524)
.+.++-++.+.++|+++++++|-+-... | ...-.++++++.+..+ ..+.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~------------g------------------~~~n~~~i~~i~~~~~-~~i~ 77 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKE------------G------------------RGSNLELIKEIAKETG-IPIQ 77 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCC------------T------------------HHHHHHHHHHHHHHSS-SEEE
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCccc------------C------------------chhHHHHHHHHHhcCC-ccEE
Confidence 3344455666678999999998542211 1 1234567777776543 4554
Q ss_pred EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc----CC
Q 041524 346 YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG----FC 421 (524)
Q Consensus 346 ~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G----~P 421 (524)
+.- ..-+.+-++.+-+. |+.++.+|-++.. +.+-+.++.+..-.. .+.++.|+.-| .-
T Consensus 78 vgG---GIrs~ed~~~ll~~--Ga~~Vvigt~~~~-----------~~~~l~~~~~~~g~~--~ivvslD~~~g~~v~~~ 139 (229)
T PF00977_consen 78 VGG---GIRSIEDAERLLDA--GADRVVIGTEALE-----------DPELLEELAERYGSQ--RIVVSLDARDGYKVATN 139 (229)
T ss_dssp EES---SE-SHHHHHHHHHT--T-SEEEESHHHHH-----------CCHHHHHHHHHHGGG--GEEEEEEEEETEEEEET
T ss_pred EeC---ccCcHHHHHHHHHh--CCCEEEeChHHhh-----------chhHHHHHHHHcCcc--cEEEEEEeeeceEEEec
Confidence 442 12356666676677 9999999876542 122333444433333 47788888777 23
Q ss_pred CC---CHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 422 GE---TEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 422 gE---T~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
|. |.-+..+.++.+.+.++..+ ++.-.-+.||-.
T Consensus 140 gw~~~~~~~~~~~~~~~~~~g~~~i-i~tdi~~dGt~~ 176 (229)
T PF00977_consen 140 GWQESSGIDLEEFAKRLEELGAGEI-ILTDIDRDGTMQ 176 (229)
T ss_dssp TTTEEEEEEHHHHHHHHHHTT-SEE-EEEETTTTTTSS
T ss_pred CccccCCcCHHHHHHHHHhcCCcEE-EEeeccccCCcC
Confidence 33 34577888889999998876 444456777744
No 283
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=48.02 E-value=2.9e+02 Score=27.73 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=82.1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEec-cCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQ-NVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~-n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
--..+++|+++.....+.|..-+.+.-- +-. |.+. .....+.++++.|.+..
T Consensus 21 lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~--------------G~~s-------------~d~~~~~e~~~~IR~~~ 73 (272)
T PF05853_consen 21 LPITPEEIAADAVACYEAGAAIVHIHARDDED--------------GRPS-------------LDPELYAEVVEAIRAAC 73 (272)
T ss_dssp S--SHHHHHHHHHHHHHHTESEEEE-EE-TTT--------------S-EE---------------HHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeecCCCCC--------------CCcC-------------CCHHHHHHHHHHHHHHC
Confidence 4467999999999999999998887653 211 3221 12356889999999987
Q ss_pred CceEEEEecCCCCCCC-HHHHHHHHc-CCCCcceeecCcC-------------CcCHHHHhhhCC-C-------CCHHHH
Q 041524 340 PEMRFRYTSPHPKDFP-DELLYIMRD-RPNVCKYIHLPAQ-------------TGNSAVLERMRR-G-------YTREAY 396 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~-~elL~~l~~-~~~G~~~i~igiE-------------Sgs~~vL~~m~R-~-------~t~e~~ 396 (524)
+++-+..++-.....+ ++.++.+.. .| -.-.+.+|-= ..-.+.++.|+. | |+...+
T Consensus 74 pd~iv~~Ttg~~~~~~~~~R~~~v~~~~p-d~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~l 152 (272)
T PF05853_consen 74 PDLIVQPTTGGGGGPDPEERLAHVEAWKP-DMASLNPGSMNFGTRDRVYINTPADARELARRMRERGIKPEIEVFDPGHL 152 (272)
T ss_dssp TTSEEEEESSTTTTSGHHHHCTHHHHH---SEEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT-EEEEEESSHHHH
T ss_pred CCeEEEeCCCCCCCCCHHHHHHHHHhcCC-CeEEecccccccccCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHHH
Confidence 8888877754333333 444444443 22 2233333321 122344555543 3 456666
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCC---CHHHHHHHHHHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGE---TEEEHADTLTLMKA 437 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgE---T~ed~~~tl~~l~~ 437 (524)
..+...+++-...-.+...|++|.+|- |.+++...++.+..
T Consensus 153 ~~~~~l~~~G~l~~p~~~~~vlG~~~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 153 RNARRLIEKGLLPGPLLVNFVLGVPGGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp HHHHHHHHTTSS-SSEEEEEEES-TTS--S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCeEEEEcccCCCCCCCCHHHHHHHHHhcCC
Confidence 555554444221125777888888874 55555555555544
No 284
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=47.97 E-value=3e+02 Score=29.94 Aligned_cols=122 Identities=11% Similarity=0.155 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.+.| ..+.. .+....+|+.++.+..+ .
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D-t~G~l------------------------------~P~~v~~lv~alk~~~~-~ 198 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD-MAGIL------------------------------TPYVAYELVKRIKEAVT-V 198 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC-CCCCC------------------------------CHHHHHHHHHHHHHhcC-C
Confidence 6888899999999999999998876 32221 13568888888887654 4
Q ss_pred EEEEecCCC-CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCC
Q 041524 343 RFRYTSPHP-KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFC 421 (524)
Q Consensus 343 ~ir~~s~~p-~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~P 421 (524)
.+.+.+-+- ..-....+..+. + |+..|+..+.. |..+..--....++..++.. |+. .|+
T Consensus 199 pi~~H~Hnt~GlA~AN~laAie-a--Gad~vD~sv~g--------lg~gaGN~~tE~lv~~L~~~--g~~------tgi- 258 (448)
T PRK12331 199 PLEVHTHATSGIAEMTYLKAIE-A--GADIIDTAISP--------FAGGTSQPATESMVAALQDL--GYD------TGL- 258 (448)
T ss_pred eEEEEecCCCCcHHHHHHHHHH-c--CCCEEEeeccc--------cCCCcCCHhHHHHHHHHHhc--CCC------CCC-
Confidence 555542111 111233444443 4 99999988774 44444444555555555554 432 122
Q ss_pred CCCHHHHHHHHHHHHHc
Q 041524 422 GETEEEHADTLTLMKAV 438 (524)
Q Consensus 422 gET~ed~~~tl~~l~~l 438 (524)
+.+.+.+..++++++
T Consensus 259 --dl~~L~~~~~~~~~~ 273 (448)
T PRK12331 259 --DLEELSEIAEYFNPI 273 (448)
T ss_pred --CHHHHHHHHHHHHHH
Confidence 345555555555444
No 285
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=47.49 E-value=38 Score=41.33 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCeeccCC----C----------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 93 MEIVLSIMKNAGYSEVINV----P----------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~----~----------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
--++.-.|+.+||++ ++- + .+||+|+++... +. ....+...++++ + +.
T Consensus 768 kniV~~~L~~~GfeV-IdLG~~vp~e~iv~aa~e~~~diVgLS~L~-t~-s~~~m~~~i~~L---~------------~~ 829 (1229)
T PRK09490 768 KNIVGVVLQCNNYEV-IDLGVMVPAEKILETAKEENADIIGLSGLI-TP-SLDEMVHVAKEM---E------------RQ 829 (1229)
T ss_pred HHHHHHHHHhCCCEE-EECCCCCCHHHHHHHHHHhCCCEEEEcCcc-hh-hHHHHHHHHHHH---H------------hc
Confidence 567888999999986 322 1 489999995433 33 233455555554 1 22
Q ss_pred CCCCEEEEEcccccc
Q 041524 159 KHPPKIVVLGCMAER 173 (524)
Q Consensus 159 ~p~~~IvvgG~~at~ 173 (524)
.++++|++||.-.+.
T Consensus 830 g~~v~v~vGGa~~s~ 844 (1229)
T PRK09490 830 GFTIPLLIGGATTSK 844 (1229)
T ss_pred CCCCeEEEEeeccch
Confidence 468999999965553
No 286
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=47.37 E-value=52 Score=31.23 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=26.4
Q ss_pred EEEEec--CCCCCHHHHHHHHHH-----HHHCCCeeccCCCCCCcEEEEeeccCcch
Q 041524 79 IYQETY--GCQMNVNDMEIVLSI-----MKNAGYSEVINVPENAEVIFINTCAIRDY 128 (524)
Q Consensus 79 ~~~~t~--GC~~N~~d~e~i~~~-----L~~~Gy~~~~~~~~~aDvv~intc~v~~~ 128 (524)
+|..++ || .+.|.+... +.+.|....+..+.+||++++ |-+++.+
T Consensus 35 lw~~~~~~~C----C~iE~~~~~~~~yD~eRfGi~~~~~sPR~ADvllV-tG~VT~~ 86 (186)
T PRK14814 35 LWPYPFATAC----CGIEYMSTACSDYDIARFGAERPSFSPRQADMILV-LGTITYK 86 (186)
T ss_pred CceeeeCCcc----HHHHHHHhcCccccHHHhCccccCCCcccceEEEE-eccCchh
Confidence 555555 46 555655432 344454322467889999999 4555654
No 287
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=47.21 E-value=58 Score=27.28 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcc-cc
Q 041524 93 MEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGC-MA 171 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~-~a 171 (524)
.+.+.+.-++.|.+. ++.+.+||+|++-.-++-+... ..+.+|++|+. -|
T Consensus 20 ~~vl~AAA~ka~l~i-i~tp~dAeLviV~G~sipnd~~----------------------------l~GKkv~i~d~~~A 70 (103)
T COG3925 20 HTVLGAAAHKAGLEI-IDTPNDAELVIVFGSSIPNDSA----------------------------LNGKKVWIGDIERA 70 (103)
T ss_pred HHHHHHHHHHCCCee-eCCCCcccEEEEeccccCCCcc----------------------------ccCceEEEecHHHH
Confidence 456667788999986 8899999999986666554321 14567888885 34
Q ss_pred cccHHHHHh
Q 041524 172 ERLKDKILD 180 (524)
Q Consensus 172 t~~~e~~l~ 180 (524)
-..||-+|.
T Consensus 71 v~~Pe~~Ls 79 (103)
T COG3925 71 VAHPELFLS 79 (103)
T ss_pred hhChHHHHH
Confidence 445666554
No 288
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=46.81 E-value=84 Score=28.15 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhC-CCcEEEEeEEEc-CCCCCHHHHHHH
Q 041524 354 FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQII-PDVGLSSDFICG-FCGETEEEHADT 431 (524)
Q Consensus 354 ~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~-pgi~i~~~fI~G-~PgET~ed~~~t 431 (524)
-.+++++...+. ....+.++.-+ +.+.....+.++.+++.. +++ -+++| -+-...+++.+.
T Consensus 42 p~e~i~~~a~~~--~~d~V~lS~~~-----------~~~~~~~~~~~~~L~~~~~~~~----~i~vGG~~~~~~~~~~~~ 104 (137)
T PRK02261 42 SQEEFIDAAIET--DADAILVSSLY-----------GHGEIDCRGLREKCIEAGLGDI----LLYVGGNLVVGKHDFEEV 104 (137)
T ss_pred CHHHHHHHHHHc--CCCEEEEcCcc-----------ccCHHHHHHHHHHHHhcCCCCC----eEEEECCCCCCccChHHH
Confidence 357777777776 66666665433 246677888889999883 243 24444 343355666677
Q ss_pred HHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 432 LTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 432 l~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
.+.+++++++.++ -|||++.
T Consensus 105 ~~~l~~~G~~~vf------~~~~~~~ 124 (137)
T PRK02261 105 EKKFKEMGFDRVF------PPGTDPE 124 (137)
T ss_pred HHHHHHcCCCEEE------CcCCCHH
Confidence 7888889987653 3566654
No 289
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=46.54 E-value=1.9e+02 Score=28.57 Aligned_cols=85 Identities=11% Similarity=0.013 Sum_probs=62.9
Q ss_pred CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC----CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHH
Q 041524 354 FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR----GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHA 429 (524)
Q Consensus 354 ~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R----~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~ 429 (524)
.|.-..+++.++ |+.-+.+|= ..+-..++. ..+.++....++.+++..+...+..|+=.|+ |++.++..
T Consensus 20 yD~~sA~i~e~a--G~dai~v~~----s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~-g~~~~~~~ 92 (240)
T cd06556 20 YDYSMAKQFADA--GLNVMLVGD----SQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGA-YGAPTAAF 92 (240)
T ss_pred CCHHHHHHHHHc--CCCEEEECh----HHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-CcCHHHHH
Confidence 466667777787 999888762 222222232 2589999999999999876677899999998 55878888
Q ss_pred HHHHHHHHcCCCeEEE
Q 041524 430 DTLTLMKAVGYDMAYM 445 (524)
Q Consensus 430 ~tl~~l~~l~~d~~~i 445 (524)
+++.-+.+.+.+.+++
T Consensus 93 ~~~~~l~~aGa~gv~i 108 (240)
T cd06556 93 ELAKTFMRAGAAGVKI 108 (240)
T ss_pred HHHHHHHHcCCcEEEE
Confidence 8888777788887765
No 290
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=46.41 E-value=3.1e+02 Score=27.67 Aligned_cols=79 Identities=15% Similarity=0.284 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceE
Q 041524 264 PVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMR 343 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 343 (524)
+++.+++-++.+.+.|++.|.|.| +++.. . +..+.++++.+.+..+...
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~D-T~G~~-------------~-----------------P~~v~~l~~~l~~~~~~~~ 193 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPD-TLGIL-------------S-----------------PFETYTYISDMVKRYPNLH 193 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CCCCC-------------C-----------------HHHHHHHHHHHHhhCCCCe
Confidence 678889889999999999999876 33221 1 3568888888887666556
Q ss_pred EEEecCCCCCCC---HHHHHHHHcCCCCcceeecCcCC
Q 041524 344 FRYTSPHPKDFP---DELLYIMRDRPNVCKYIHLPAQT 378 (524)
Q Consensus 344 ir~~s~~p~~~~---~elL~~l~~~~~G~~~i~igiES 378 (524)
+.+. .|- ++- ...+..+. + |+.+++-.+-.
T Consensus 194 i~~H-~Hn-d~Gla~AN~laA~~-a--Ga~~vd~s~~G 226 (280)
T cd07945 194 FDFH-AHN-DYDLAVANVLAAVK-A--GIKGLHTTVNG 226 (280)
T ss_pred EEEE-eCC-CCCHHHHHHHHHHH-h--CCCEEEEeccc
Confidence 6554 232 222 33444443 3 99999866554
No 291
>PRK03906 mannonate dehydratase; Provisional
Probab=45.94 E-value=60 Score=34.51 Aligned_cols=49 Identities=14% Similarity=-0.009 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEE
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSS 414 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~ 414 (524)
+..|+.+++. |+..|...+-... .+...+.+++.+.-+.+.++ |+.+..
T Consensus 13 ~~~l~~~rQ~--G~~~iv~~l~~~~------~g~~W~~~~i~~~~~~ie~~--Gl~~~v 61 (385)
T PRK03906 13 PVTLEDIRQP--GATGIVTALHDIP------VGEVWPVEEILARKAEIEAA--GLEWSV 61 (385)
T ss_pred cchHHHHhcC--CCCceeecCCCCC------CCCCCCHHHHHHHHHHHHHc--CCeEEE
Confidence 3445555554 5555543332211 12334555555555555555 554443
No 292
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=45.71 E-value=4.9e+02 Score=29.35 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.|.|-. +.. .+....+++.++.+..+ .
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~Dt~-G~~------------------------------~P~~v~~lv~~lk~~~~-~ 193 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKDMA-GIL------------------------------TPKAAYELVSALKKRFG-L 193 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCC-CCc------------------------------CHHHHHHHHHHHHHhCC-C
Confidence 488899999999999999999887632 211 13568888888877654 4
Q ss_pred EEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcCCc
Q 041524 343 RFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQTG 379 (524)
Q Consensus 343 ~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiESg 379 (524)
.+.+.+-+-..+ ....+..+. + |+.+++..+-..
T Consensus 194 pi~~H~Hnt~Gla~An~laAve-a--Ga~~vd~ai~Gl 228 (582)
T TIGR01108 194 PVHLHSHATTGMAEMALLKAIE-A--GADGIDTAISSM 228 (582)
T ss_pred ceEEEecCCCCcHHHHHHHHHH-h--CCCEEEeccccc
Confidence 455542111111 233444443 4 999998766643
No 293
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=45.57 E-value=91 Score=30.43 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=78.3
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEE--EeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTL--LGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l--~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
-+-+...+-+|++.+.+.|+..+.+ .|..|--+ +.+ + ...++++...
T Consensus 11 LsaD~~~l~~el~~~~~agad~iH~DVMDghFVPN---------------iTf-------------G---p~~v~~l~~~ 59 (220)
T COG0036 11 LSADFARLGEELKALEAAGADLIHIDVMDGHFVPN---------------ITF-------------G---PPVVKALRKI 59 (220)
T ss_pred hhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC---------------ccc-------------C---HHHHHHHhhc
Confidence 3556778899999999998887664 44443211 000 1 2344445443
Q ss_pred C-CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 339 F-PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 339 ~-~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
. -.+.+.+...+ ++..++.+.++ |+.+|++=+|+ + +...+.++.+|+. |+....-|=
T Consensus 60 t~~p~DvHLMV~~----p~~~i~~fa~a--gad~It~H~E~-~-------------~~~~r~i~~Ik~~--G~kaGv~ln 117 (220)
T COG0036 60 TDLPLDVHLMVEN----PDRYIEAFAKA--GADIITFHAEA-T-------------EHIHRTIQLIKEL--GVKAGLVLN 117 (220)
T ss_pred CCCceEEEEecCC----HHHHHHHHHHh--CCCEEEEEecc-C-------------cCHHHHHHHHHHc--CCeEEEEEC
Confidence 1 12233333223 47899999999 99999998883 2 3467788899998 765443333
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
|+-..+.++.- +.+ +|.+ ..+|..||---
T Consensus 118 ---P~Tp~~~i~~~---l~~--vD~V--llMsVnPGfgG 146 (220)
T COG0036 118 ---PATPLEALEPV---LDD--VDLV--LLMSVNPGFGG 146 (220)
T ss_pred ---CCCCHHHHHHH---Hhh--CCEE--EEEeECCCCcc
Confidence 44333443333 222 3544 34677777544
No 294
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=45.54 E-value=45 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=24.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcch
Q 041524 81 QETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDY 128 (524)
Q Consensus 81 ~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~ 128 (524)
||-++|---.||.|. .|... +.+|..||+++++ -.+|..
T Consensus 24 IEi~a~~sP~YDaEr-------fgI~~-v~sPRhADiLlVT-G~vT~~ 62 (148)
T COG3260 24 IEILAALSPRYDAER-------FGIKV-VNSPRHADILLVT-GAVTRQ 62 (148)
T ss_pred EEEeeccCcccchHH-------heeEE-eCCCccccEEEEe-ccccHH
Confidence 344444445666654 46554 7889999999984 445553
No 295
>smart00642 Aamy Alpha-amylase domain.
Probab=45.18 E-value=47 Score=30.76 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGE 423 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE 423 (524)
.+.+++.++++.+++. ||.+..|+++...+.
T Consensus 67 Gt~~d~~~lv~~~h~~--Gi~vilD~V~NH~~~ 97 (166)
T smart00642 67 GTMEDFKELVDAAHAR--GIKVILDVVINHTSD 97 (166)
T ss_pred CCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC
Confidence 3789999999999999 999999999988766
No 296
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=45.16 E-value=3.2e+02 Score=27.04 Aligned_cols=84 Identities=7% Similarity=0.072 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHh-CCCcEEEEeEEEcCCCCC-------HHH
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQI-IPDVGLSSDFICGFCGET-------EEE 427 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~-~pgi~i~~~fI~G~PgET-------~ed 427 (524)
++.++.++++ |+..+.+.+.-.. .......+.++..++.+.+.+. .-.+.+.+.+..++-..+ .+.
T Consensus 13 ~~~l~~a~~~--G~d~vEl~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~ 86 (279)
T cd00019 13 ENALKRAKEI--GFDTVAMFLGNPR----SWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIER 86 (279)
T ss_pred HHHHHHHHHc--CCCEEEEEcCCCC----ccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHH
Confidence 5678888888 9888877654321 1222333556666666666665 222333344444543333 345
Q ss_pred HHHHHHHHHHcCCCeEEE
Q 041524 428 HADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 428 ~~~tl~~l~~l~~d~~~i 445 (524)
+++.++++.+++.+.+.+
T Consensus 87 ~~~~i~~A~~lG~~~v~~ 104 (279)
T cd00019 87 LKDEIERCEELGIRLLVF 104 (279)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 667778888888886654
No 297
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=45.15 E-value=2.8e+02 Score=27.86 Aligned_cols=96 Identities=19% Similarity=0.308 Sum_probs=60.5
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
....++.+-|||. .++ .+++.+++-++.+.+.|+..|.+.| .++..
T Consensus 130 v~~~i~~~f~~~~----------~~~---~~~~~~~~~~~~~~~~Ga~~i~l~D-T~G~~-------------------- 175 (274)
T cd07938 130 VRGYVSTAFGCPY----------EGE---VPPERVAEVAERLLDLGCDEISLGD-TIGVA-------------------- 175 (274)
T ss_pred EEEEEEeEecCCC----------CCC---CCHHHHHHHHHHHHHcCCCEEEECC-CCCcc--------------------
Confidence 4456666677763 122 2788899989999889999998876 32211
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCC--CCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHP--KDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p--~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
.+..+.++++.+.+..|...+.+.. |- ..-....+..+. + |+.+++..+-
T Consensus 176 ----------~P~~v~~lv~~l~~~~~~~~i~~H~-Hnd~GlA~AN~laA~~-a--Ga~~id~t~~ 227 (274)
T cd07938 176 ----------TPAQVRRLLEAVLERFPDEKLALHF-HDTRGQALANILAALE-A--GVRRFDSSVG 227 (274)
T ss_pred ----------CHHHHHHHHHHHHHHCCCCeEEEEE-CCCCChHHHHHHHHHH-h--CCCEEEEecc
Confidence 1356888888888876655565542 21 111233455553 4 9999885443
No 298
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=44.97 E-value=3.4e+02 Score=27.32 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhCCceEEEE-ecCCCCC-CCHHHHHHHHcCCCCcceeecCcCCcCH---------HHHhhhCCCCCHHHH
Q 041524 328 FADLLDRLSLEFPEMRFRY-TSPHPKD-FPDELLYIMRDRPNVCKYIHLPAQTGNS---------AVLERMRRGYTREAY 396 (524)
Q Consensus 328 ~~~Ll~~l~~~~~~~~ir~-~s~~p~~-~~~elL~~l~~~~~G~~~i~igiESgs~---------~vL~~m~R~~t~e~~ 396 (524)
+.+.++++.......-+-| +.-+|+. -+.+.++.|.++ |+..|.+|+-..+| ..+++++.|+|.+++
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~--GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~ 81 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEA--GADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDT 81 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhC--CCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHH
Confidence 4445555554332222222 3234431 345666666676 99999999986554 346678889999999
Q ss_pred HHHHHHHHHhCCCc
Q 041524 397 LDLVQKIRQIIPDV 410 (524)
Q Consensus 397 ~~~v~~ir~~~pgi 410 (524)
+++++.+|+..+++
T Consensus 82 lel~~~~r~~~~~~ 95 (265)
T COG0159 82 LELVEEIRAKGVKV 95 (265)
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999774453
No 299
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=44.63 E-value=88 Score=35.78 Aligned_cols=103 Identities=8% Similarity=0.123 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHcCCCCcceeecCcCCc-----CHHHHhhh--CCCCCHHHHHHHHHHHHHhCCCcEEE--EeEEE-cCCC
Q 041524 353 DFPDELLYIMRDRPNVCKYIHLPAQTG-----NSAVLERM--RRGYTREAYLDLVQKIRQIIPDVGLS--SDFIC-GFCG 422 (524)
Q Consensus 353 ~~~~elL~~l~~~~~G~~~i~igiESg-----s~~vL~~m--~R~~t~e~~~~~v~~ir~~~pgi~i~--~~fI~-G~Pg 422 (524)
.+++..+++++++ |..... ..+.| +..-|.++ ..+.+.+.+.+.|.......+-+.++ .|.|+ .=|.
T Consensus 254 ~~n~~~~~iakea--GY~~af-T~~~G~~~~~~~~~LpRi~I~~~~sl~~f~~~v~~~~~~~~~r~~h~dld~vyd~dp~ 330 (671)
T PRK14582 254 EANGIALEELKKL--GYDMAF-TLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRVMHIDLDYVYDENPQ 330 (671)
T ss_pred CCCHHHHHHHHHC--CCeEEE-EeCCCCCCCCCcCccceEEecCCCCHHHHHHHHhcccCCCCEEEEEeccccccCCCHH
Confidence 5789999999998 887433 33322 21223332 34567888888776544432222233 45677 4677
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 423 ETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 423 ET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
++.+.+...++-+++.+++.+++..|+--.|+..+.
T Consensus 331 qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~ 366 (671)
T PRK14582 331 QQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVK 366 (671)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCcccc
Confidence 899999999999999999999999998777777765
No 300
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=44.63 E-value=3.5e+02 Score=27.39 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
-+++.+++-++.+.+.|+..|.|.|- .+.- .+.++.++++.+.+..+..
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~------------------------------~P~~v~~lv~~l~~~~~~~ 200 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDT-IGVG------------------------------TPGQVRAVLEAVLAEFPAE 200 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccc-cCcc------------------------------CHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999998762 2211 1357888888888766544
Q ss_pred EEEEecCCC--CCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 343 RFRYTSPHP--KDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 343 ~ir~~s~~p--~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
.+.+.. |- ..-....+..+. + |+.+++..+.
T Consensus 201 ~i~~H~-Hn~~Gla~AN~laA~~-a--G~~~id~s~~ 233 (287)
T PRK05692 201 RLAGHF-HDTYGQALANIYASLE-E--GITVFDASVG 233 (287)
T ss_pred eEEEEe-cCCCCcHHHHHHHHHH-h--CCCEEEEEcc
Confidence 555542 21 111244555554 4 9999987665
No 301
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=44.45 E-value=1.3e+02 Score=27.81 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHH
Q 041524 352 KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADT 431 (524)
Q Consensus 352 ~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~t 431 (524)
.++-+++++.+.+. +.+...+| .+.+...++.+.+++.+||+.+... --|+ -..++..+.
T Consensus 32 ~dl~~~ll~~~~~~--~~~v~llG---------------~~~~~~~~~~~~l~~~yp~l~i~g~-~~g~--~~~~~~~~i 91 (171)
T cd06533 32 SDLMPALLELAAQK--GLRVFLLG---------------AKPEVLEKAAERLRARYPGLKIVGY-HHGY--FGPEEEEEI 91 (171)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEC---------------CCHHHHHHHHHHHHHHCCCcEEEEe-cCCC--CChhhHHHH
Confidence 34567777777765 78888886 3456667777889999999876542 1222 234444458
Q ss_pred HHHHHHcCCCeEEEEe
Q 041524 432 LTLMKAVGYDMAYMFA 447 (524)
Q Consensus 432 l~~l~~l~~d~~~i~~ 447 (524)
++.+.+.++|.+.+..
T Consensus 92 ~~~I~~~~pdiv~vgl 107 (171)
T cd06533 92 IERINASGADILFVGL 107 (171)
T ss_pred HHHHHHcCCCEEEEEC
Confidence 8999999999877655
No 302
>PRK04326 methionine synthase; Provisional
Probab=43.99 E-value=3.7e+02 Score=27.49 Aligned_cols=103 Identities=15% Similarity=0.034 Sum_probs=52.8
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcC--CCCCHHHHHHHH
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF--CGETEEEHADTL 432 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~--PgET~ed~~~tl 432 (524)
...+++.|.+. ++..+++-.-++..+ .++.+++..++-.+...+|-+- --|+.|++.+.+
T Consensus 219 ~~~~~~~l~~~--~vd~i~~d~~~~~~~----------------~l~~~~~~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v 280 (330)
T PRK04326 219 YSRIAPYILEF--PVDQFDLEFANGNYK----------------LLDLLKEYGFDKELGLGVIDVHSARVESVEEIKEAI 280 (330)
T ss_pred cHHHHHHHHhC--CCCEEEEEeCCCCch----------------hHHHhhccCCCCeEEeEEEeCCCCCCCCHHHHHHHH
Confidence 35678889888 888888766432211 2222334322334555555442 236888888777
Q ss_pred HHHHH-cCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHHHHHH
Q 041524 433 TLMKA-VGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRE 482 (524)
Q Consensus 433 ~~l~~-l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~~~~~ 482 (524)
+-+.+ ++.+.+.+. |+.-+.. .. .-....+-+.+.+....+++
T Consensus 281 ~~~~~~~~~~~~~ls-----p~Cgl~~-~~-~~~a~~kl~~l~~~a~~~~~ 324 (330)
T PRK04326 281 KKGLEYVPPEKLYIN-----PDCGLKL-LP-REIAYQKLVNMVKATREVRE 324 (330)
T ss_pred HHHHHhCChhhEEEC-----CCCCCCc-CC-HHHHHHHHHHHHHHHHHHHH
Confidence 66655 333333332 2322221 11 11233445566666655554
No 303
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=43.30 E-value=3.3e+02 Score=27.30 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+.+-++.+.+.|+..|.|.| .++.. .+..+.++++.+.+..+ .
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~D-T~G~~------------------------------~P~~v~~lv~~l~~~~~-~ 193 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIKD-MAGLL------------------------------TPYAAYELVKALKKEVG-L 193 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC-CCCCC------------------------------CHHHHHHHHHHHHHhCC-C
Confidence 3788888888888889999998876 33322 13568888888887655 4
Q ss_pred EEEEecCCC--CCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 343 RFRYTSPHP--KDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 343 ~ir~~s~~p--~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
.+.+. .|- ..-....+..+. + |+.+++..+.
T Consensus 194 ~l~~H-~Hnd~GlA~aN~laA~~-a--Ga~~vd~sv~ 226 (275)
T cd07937 194 PIHLH-THDTSGLAVATYLAAAE-A--GVDIVDTAIS 226 (275)
T ss_pred eEEEE-ecCCCChHHHHHHHHHH-h--CCCEEEEecc
Confidence 55554 232 111234455553 4 9999986654
No 304
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=43.09 E-value=3e+02 Score=26.41 Aligned_cols=133 Identities=10% Similarity=0.039 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEE
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR 345 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir 345 (524)
.+.++-++.+.+.|+.++.++|-+-. +. +. ....+++.++.+..+ .++.
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~-~~-----------~~------------------~~~~~~i~~i~~~~~-~pv~ 77 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGA-KG-----------GE------------------PVNLELIEEIVKAVG-IPVQ 77 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcc-cc-----------CC------------------CCCHHHHHHHHHhcC-CCEE
Confidence 34445555566679999999976532 10 11 112345555554321 2332
Q ss_pred EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc------
Q 041524 346 YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG------ 419 (524)
Q Consensus 346 ~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G------ 419 (524)
.. ....+.+.++.+.++ |+..+.+|-....+ .+.+.++++.+.+. .+.++.|+-.|
T Consensus 78 ~~---GgI~~~e~~~~~~~~--Gad~vvigs~~l~d-----------p~~~~~i~~~~g~~--~i~~sid~~~~~~~~~~ 139 (234)
T cd04732 78 VG---GGIRSLEDIERLLDL--GVSRVIIGTAAVKN-----------PELVKELLKEYGGE--RIVVGLDAKDGKVATKG 139 (234)
T ss_pred Ee---CCcCCHHHHHHHHHc--CCCEEEECchHHhC-----------hHHHHHHHHHcCCc--eEEEEEEeeCCEEEECC
Confidence 22 122356666776677 99999887665331 23333333332221 34455554322
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEe
Q 041524 420 FCGETEEEHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 420 ~PgET~ed~~~tl~~l~~l~~d~~~i~~ 447 (524)
....+..+..+.++.+.+.+.+.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~ga~~iii~~ 167 (234)
T cd04732 140 WLETSEVSLEELAKRFEELGVKAIIYTD 167 (234)
T ss_pred CeeecCCCHHHHHHHHHHcCCCEEEEEe
Confidence 2123444555667777888888776654
No 305
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=41.65 E-value=3.1e+02 Score=29.68 Aligned_cols=73 Identities=11% Similarity=0.207 Sum_probs=51.2
Q ss_pred cceeecCcCCcCHHHHhhhCCCCC---HHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEE
Q 041524 369 CKYIHLPAQTGNSAVLERMRRGYT---REAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAY 444 (524)
Q Consensus 369 ~~~i~igiESgs~~vL~~m~R~~t---~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~ 444 (524)
+.++.+.+...+...|+.+.|+.. .|.+++.++.+++.- ... +...++=|+ +.+|..+-.+++..-.++.+-
T Consensus 403 vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~-qrtvyRlTlVkg~---n~dd~~Ayfnlv~rglp~fie 478 (601)
T KOG1160|consen 403 VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQ-QRTVYRLTLVKGW---NSDDLPAYFNLVSRGLPDFIE 478 (601)
T ss_pred hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhh-cceEEEEEEeccc---cccccHHHHHHHhccCCceEE
Confidence 567888888889999999999875 456666666666541 233 445544443 667788888888887777766
Q ss_pred E
Q 041524 445 M 445 (524)
Q Consensus 445 i 445 (524)
+
T Consensus 479 V 479 (601)
T KOG1160|consen 479 V 479 (601)
T ss_pred E
Confidence 5
No 306
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.44 E-value=10 Score=33.66 Aligned_cols=17 Identities=35% Similarity=1.003 Sum_probs=14.4
Q ss_pred EEcccCCccCcccccCC
Q 041524 239 SVMRGCNNMCSFCIVPF 255 (524)
Q Consensus 239 ~isRGC~~~CsFC~vp~ 255 (524)
....||-+.|+||.+.+
T Consensus 75 KFADG~GH~C~YCq~r~ 91 (169)
T KOG3799|consen 75 KFADGCGHNCSYCQTRF 91 (169)
T ss_pred ccccccCcccchhhhhH
Confidence 35899999999999764
No 307
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=41.27 E-value=3.6e+02 Score=28.88 Aligned_cols=80 Identities=9% Similarity=0.011 Sum_probs=46.1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...++++.++.++.+.+.|++.|...-.+. .....+.++++.+..+
T Consensus 11 D~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~----------------------------------~~~~~~~i~~l~~~~~ 56 (430)
T PRK07028 11 DLLELDRAVEIAKEAVAGGADWIEAGTPLI----------------------------------KSEGMNAIRTLRKNFP 56 (430)
T ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeCCHHH----------------------------------HHhhHHHHHHHHHHCC
Confidence 345778888888888888988875410000 0112344555554433
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
...+- ...|..+.....++...++ |...+++..+
T Consensus 57 ~~~ii-~D~kl~d~g~~~v~~a~~a--GAdgV~v~g~ 90 (430)
T PRK07028 57 DHTIV-ADMKTMDTGAIEVEMAAKA--GADIVCILGL 90 (430)
T ss_pred CCEEE-EEeeeccchHHHHHHHHHc--CCCEEEEecC
Confidence 22221 1123333455678888888 9999997544
No 308
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.25 E-value=1.5e+02 Score=29.56 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=49.6
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcC---------HHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEE--E----------
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGN---------SAVLERMRRGYTREAYLDLVQKIRQIIPDVGL--S---------- 413 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs---------~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i--~---------- 413 (524)
+.+++..|.+. |+..|.||+-..+ ....+.+..|.+.+++.+.++.+|+..+++.+ .
T Consensus 28 ~~~~~~~l~~~--Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G 105 (258)
T PRK13111 28 SLEIIKALVEA--GADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYG 105 (258)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcC
Confidence 34455555555 7777777766522 22345566677888888888887743233221 1
Q ss_pred --------------EeEEEcCCCCCHHHHHHHHHHHHHcCCCeEE
Q 041524 414 --------------SDFICGFCGETEEEHADTLTLMKAVGYDMAY 444 (524)
Q Consensus 414 --------------~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~ 444 (524)
+-+| |+=..|+.++.++.+++.+++.+.
T Consensus 106 ~e~f~~~~~~aGvdGvii---pDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 106 VERFAADAAEAGVDGLII---PDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHHHHHcCCcEEEE---CCCCHHHHHHHHHHHHHcCCcEEE
Confidence 1122 233346666777777777777665
No 309
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=40.70 E-value=2.3e+02 Score=28.50 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=64.1
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC-
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP- 340 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~- 340 (524)
.++...+..++..+.+.|++.|..+..+....+ ..+.-+ -+ .-....+|++.+....+
T Consensus 81 d~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g------------~~~~~~-~~--------~~~~~~~Li~~i~~~~~~ 139 (287)
T PF02219_consen 81 DRNREALQSDLLGAHALGIRNILALTGDPPKGG------------DHFAKP-VF--------DFDYALDLIRLIRQEYGD 139 (287)
T ss_dssp TSBHHHHHHHHHHHHHTT--EEEEESS-TSTTS------------SS-----TT--------S-SSHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCC------------ccccCC-Cc--------hhHHHHHHHHHHHHhcCc
Confidence 456789999999999999999887765543221 101000 00 01225566666664322
Q ss_pred ceEEEEec---CCCCCCC--HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Q 041524 341 EMRFRYTS---PHPKDFP--DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSD 415 (524)
Q Consensus 341 ~~~ir~~s---~~p~~~~--~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~ 415 (524)
.+.+.+.. .||..-+ .++..+.++..+|+.++.- | =.++.+.+.+.++.+++....+.|...
T Consensus 140 ~~~i~va~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iT--Q-----------~~fd~~~~~~~~~~~~~~g~~~pIi~G 206 (287)
T PF02219_consen 140 DFSIGVAGYPEGHPEAPDFEAELKRLKKKIDAGADFIIT--Q-----------PFFDAEAFERFLDRLREAGIDVPIIPG 206 (287)
T ss_dssp GSEEEEEE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEE--E-----------E-SSHHHHHHHHHHHHHTTHTSEEEEE
T ss_pred ccccccccCCCCCccccCHHHHHHHHHHHHHCCCCEEec--c-----------ccCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 24454432 2443333 3344444443338776431 1 136789999999999998222365555
Q ss_pred EE
Q 041524 416 FI 417 (524)
Q Consensus 416 fI 417 (524)
++
T Consensus 207 I~ 208 (287)
T PF02219_consen 207 IM 208 (287)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 310
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=40.39 E-value=4e+02 Score=26.87 Aligned_cols=126 Identities=17% Similarity=0.329 Sum_probs=67.5
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccc-cccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR-LSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~-~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
.++.+.+.+.+..+.+.|++.|..+..+....+ ..+. ..+.| ....+|++.+....+
T Consensus 70 ~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~------------~~~~~~~~~f----------~~a~~Li~~i~~~~~ 127 (281)
T TIGR00677 70 NMPIEMIDDALERAYSNGIQNILALRGDPPHIG------------DDWTEVEGGF----------QYAVDLVKYIRSKYG 127 (281)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC------------CCCCCCCCCC----------cCHHHHHHHHHHhCC
Confidence 344568888888888889999876654433221 1000 00111 125667777665433
Q ss_pred c-eEEEEe-c--CCCCCCCHHH-HHHHH-cCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEE
Q 041524 341 E-MRFRYT-S--PHPKDFPDEL-LYIMR-DRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSS 414 (524)
Q Consensus 341 ~-~~ir~~-s--~~p~~~~~el-L~~l~-~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~ 414 (524)
. +.+... + .||..-+.+. ++.|+ +...|+.++.- . =-++.+.+.+.++.+++. |+.+
T Consensus 128 ~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iT-----------Q--~~Fd~~~~~~f~~~~~~~--gi~~-- 190 (281)
T TIGR00677 128 DYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIIT-----------Q--LFYDVDNFLKFVNDCRAI--GIDC-- 190 (281)
T ss_pred CceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeec-----------c--ceecHHHHHHHHHHHHHc--CCCC--
Confidence 3 455443 1 2444333332 33333 21237764431 1 136788999999999998 6543
Q ss_pred eEEEcC-CCCCHH
Q 041524 415 DFICGF-CGETEE 426 (524)
Q Consensus 415 ~fI~G~-PgET~e 426 (524)
=+|.|+ |=.+..
T Consensus 191 PIi~GI~pi~s~~ 203 (281)
T TIGR00677 191 PIVPGIMPINNYA 203 (281)
T ss_pred CEEeeccccCCHH
Confidence 357776 334444
No 311
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=40.35 E-value=2.9e+02 Score=27.34 Aligned_cols=80 Identities=9% Similarity=0.105 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.|.| .++.. .+..+.+++..+.+..+ .
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~D-T~G~~------------------------------~P~~v~~lv~~l~~~~~-~ 183 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFAD-TVGIL------------------------------DPFTTYELIRRLRAATD-L 183 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCC-CCCCC------------------------------CHHHHHHHHHHHHHhcC-C
Confidence 4789999999999999999998876 33321 13568888888887665 4
Q ss_pred EEEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 343 RFRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 343 ~ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
.+.+..-+ ...-....+..+. + |+.+|+-.+-
T Consensus 184 ~l~~H~Hn~~Gla~An~laAi~-a--G~~~vd~s~~ 216 (259)
T cd07939 184 PLEFHAHNDLGLATANTLAAVR-A--GATHVSVTVN 216 (259)
T ss_pred eEEEEecCCCChHHHHHHHHHH-h--CCCEEEEecc
Confidence 55554211 1111244455553 4 9999886554
No 312
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=40.22 E-value=1.1e+02 Score=29.45 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=55.4
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHCCCee-cc-----------CCCCCCcEEEEeeccCcc---hHHHHHHHHHHHHHH
Q 041524 78 RIYQETYGCQMNVNDMEIVLSIMKNAGYSE-VI-----------NVPENAEVIFINTCAIRD---YAEHKVWQRLNYFWF 142 (524)
Q Consensus 78 ~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~-~~-----------~~~~~aDvv~intc~v~~---~a~~~~~~~l~~~~~ 142 (524)
.+.|+.=.+ .+...+...+++.|... ++ ...+..|.|++.|.-.-. .-...+.+++++++.
T Consensus 83 ~i~~H~E~~----~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~ 158 (201)
T PF00834_consen 83 YITFHAEAT----EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRK 158 (201)
T ss_dssp EEEEEGGGT----TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHH
T ss_pred EEEEcccch----hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHH
Confidence 455554433 35666778888899752 11 112588999997754422 122336677777755
Q ss_pred hhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECC
Q 041524 143 LKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGP 191 (524)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~g 191 (524)
+.. ++..+..|.|=|..-.-.-..+.+ .++|.+|.|
T Consensus 159 ~~~-----------~~~~~~~I~vDGGI~~~~~~~~~~--aGad~~V~G 194 (201)
T PF00834_consen 159 LIP-----------ENGLDFEIEVDGGINEENIKQLVE--AGADIFVAG 194 (201)
T ss_dssp HHH-----------HHTCGSEEEEESSESTTTHHHHHH--HT--EEEES
T ss_pred HHH-----------hcCCceEEEEECCCCHHHHHHHHH--cCCCEEEEC
Confidence 543 223667787755444444555554 379999987
No 313
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=40.14 E-value=3e+02 Score=30.18 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEE
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR 345 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir 345 (524)
+++.+.++.|.++|++-|.+ |-. . |. ...+.++++++.+..|...+-
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~-D~a---~------------~~-----------------~~~~~~~i~~ik~~~p~~~v~ 272 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVV-DTA---H------------GH-----------------QEKMLEALRAVRALDPGVPIV 272 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEE-ecc---C------------Cc-----------------cHHHHHHHHHHHHHCCCCeEE
Confidence 46778889999999988655 311 1 11 246888999999887765553
Q ss_pred EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC-C-CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC
Q 041524 346 YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR-G-YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGE 423 (524)
Q Consensus 346 ~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R-~-~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE 423 (524)
.. +..+.|-.+.+.++ |+..|-+|+=+||=-+++...- + -....+.++.+.+++. ++.+.+|== =.
T Consensus 273 ag----nv~t~~~a~~l~~a--Gad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~--~~~via~gg----i~ 340 (479)
T PRK07807 273 AG----NVVTAEGTRDLVEA--GADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAREL--GAHVWADGG----VR 340 (479)
T ss_pred ee----ccCCHHHHHHHHHc--CCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhc--CCcEEecCC----CC
Confidence 32 22355666666677 9999999999988777765432 1 1355566666666665 665544421 14
Q ss_pred CHHHHHHHHH
Q 041524 424 TEEEHADTLT 433 (524)
Q Consensus 424 T~ed~~~tl~ 433 (524)
+..|+.+.+.
T Consensus 341 ~~~~~~~al~ 350 (479)
T PRK07807 341 HPRDVALALA 350 (479)
T ss_pred CHHHHHHHHH
Confidence 6677666554
No 314
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=39.77 E-value=2.8e+02 Score=25.16 Aligned_cols=95 Identities=7% Similarity=0.111 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHCCCeec--cCC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCC
Q 041524 92 DMEIVLSIMKNAGYSEV--INV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKH 160 (524)
Q Consensus 92 d~e~i~~~L~~~Gy~~~--~~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 160 (524)
-.+.+...|+..||+.+ +.+ ...+|+|+++....... .......++. ..+
T Consensus 12 ~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~-g~~~~~~l~~------------------~~~ 72 (204)
T PRK09958 12 AIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVN-GIQVLETLRK------------------RQY 72 (204)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccCCCEEEEeCCCCCCC-HHHHHHHHHh------------------hCC
Confidence 34556677777787642 111 13689999976543332 2333333332 134
Q ss_pred CCEEEEEccccc-ccHHHHHhhCCcceEEECCCCcccHHHHHHHHhc
Q 041524 161 PPKIVVLGCMAE-RLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 161 ~~~IvvgG~~at-~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
..+|++.+.+.. ......+. ....|++..+.....+...++.+..
T Consensus 73 ~~~ii~ls~~~~~~~~~~~~~-~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 73 SGIIIIVSAKNDHFYGKHCAD-AGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CCeEEEEeCCCCHHHHHHHHH-CCCCEEEecCCCHHHHHHHHHHHHc
Confidence 445554443332 22233443 3456777777555555555555443
No 315
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=39.33 E-value=12 Score=40.67 Aligned_cols=75 Identities=12% Similarity=0.035 Sum_probs=50.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCC
Q 041524 81 QETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKH 160 (524)
Q Consensus 81 ~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 160 (524)
+=|-||..+..|+.-+.+. ..|.--..+.++-||+++ .++++|..+.+.++ + +++.|
T Consensus 42 hGp~~Ca~~~~~~~g~~~~---~~~r~~~tdl~E~Di~~~------~g~~~~L~~~i~ei---~-----------~~~~p 98 (457)
T CHL00073 42 IGTKTCGYFLQNALGVMIF---AEPRYAMAELEEGDISAQ------LNDYEELKRLCLQI---K-----------KDRNP 98 (457)
T ss_pred eccchhhcchhccccCccc---CCccceecccCchhhhhh------cCCHHHHHHHHHHH---H-----------HhCCC
Confidence 3367999998887554432 223221345688999866 34778888888877 1 13358
Q ss_pred CCEEEEEcccccccHHHH
Q 041524 161 PPKIVVLGCMAERLKDKI 178 (524)
Q Consensus 161 ~~~IvvgG~~at~~~e~~ 178 (524)
.+.+|+|+|.+...++++
T Consensus 99 ~~ifv~~TC~t~iIGdDl 116 (457)
T CHL00073 99 SVIVWIGTCTTEIIKMDL 116 (457)
T ss_pred CEEEEEccCcHHhhccCH
Confidence 889999999998876543
No 316
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=39.01 E-value=6e+02 Score=28.49 Aligned_cols=143 Identities=12% Similarity=0.039 Sum_probs=77.9
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh-
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE- 338 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~- 338 (524)
-.+.++++=++=++.|.+.|+++|... |.+. + ...+.. +.++.+.
T Consensus 42 g~~~s~e~Ki~ia~~L~~~Gvd~IE~G---fp~~------------s------------------~~D~e~-v~~i~~~~ 87 (564)
T TIGR00970 42 PDPMSPARKRRYFDLLVRIGFKEIEVG---FPSA------------S------------------QTDFDF-VREIIEQG 87 (564)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCC------------C------------------HHHHHH-HHHHHHhc
Confidence 467899999999999999999998754 3222 0 112222 2233222
Q ss_pred --CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCc----
Q 041524 339 --FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDV---- 410 (524)
Q Consensus 339 --~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi---- 410 (524)
.+..++..-.......-+..++.+..+ +...|++-+=+.+-.+...+++.. ..+.+.+.++.+++. +.
T Consensus 88 l~~~~~~i~al~~~~~~did~a~~a~~~~--~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--~~~~~~ 163 (564)
T TIGR00970 88 AIPDDVTIQVLTQSREELIERTFEALSGA--KRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKC--TKQAAK 163 (564)
T ss_pred CCCCCcEEEEEcCCchhhHHHHHHHhcCC--CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccc
Confidence 112333222222111113445555444 444677766555555555666542 355566677777877 43
Q ss_pred EEEEeEEEcCCCC----C-HHHHHHHHHHHHHcCC
Q 041524 411 GLSSDFICGFCGE----T-EEEHADTLTLMKAVGY 440 (524)
Q Consensus 411 ~i~~~fI~G~PgE----T-~ed~~~tl~~l~~l~~ 440 (524)
.+.+.|.+-|-+| + .+-+.+.++.+.+.+.
T Consensus 164 ~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~ 198 (564)
T TIGR00970 164 YPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWA 198 (564)
T ss_pred cccceEEEEEecccCCCCCHHHHHHHHHHHHHhCC
Confidence 2345555556566 4 3455566666666654
No 317
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=38.85 E-value=68 Score=37.37 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=30.4
Q ss_pred EEEEecCCCCCHHHHHHHHH-----HHHHCCCeeccCCCCCCcEEEEeeccCcchHH
Q 041524 79 IYQETYGCQMNVNDMEIVLS-----IMKNAGYSEVINVPENAEVIFINTCAIRDYAE 130 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~-----~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~ 130 (524)
+|..++||. ==|.|.++. -+.+.|++..+..|.+||++++ |-+++.+-.
T Consensus 24 ~w~~~~~~~--cc~~E~~~~~~~~~D~~r~G~~~~~~sPr~aD~llv-~G~vt~~~~ 77 (788)
T PRK13292 24 LWPMFFGLS--CCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVI-AGTVFKKMA 77 (788)
T ss_pred CcceecCCc--cHHHHHHHhcCCcCCHHHcCCCccCCCcccceEEEE-ecCCcHhhH
Confidence 555556542 267777644 3556676533577899999999 445555433
No 318
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=38.76 E-value=1.7e+02 Score=25.28 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEE-cCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHH
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFIC-GFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK 469 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~-G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k 469 (524)
.+.+.++.+.+++..++..+...|+- +-| ++.+.++-+.+.++..+.+.+|...+|-+..+ ++|....
T Consensus 17 ~~~~~~~~~~l~~~~~~~~v~~afle~~~P-----~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~----dip~~~~ 85 (126)
T PRK00923 17 KEVVTKIAEKIKEKHPFYIVEVGFMEFNEP-----TIPEALKKLIGTGADKIIVVPVFLAHGVHTKR----DIPRILG 85 (126)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEchhhccCccccc----ccchhhh
Confidence 36777788888887667677777763 434 67778888888999999999999999987654 5665544
No 319
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=38.66 E-value=45 Score=36.79 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=38.9
Q ss_pred CCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECC
Q 041524 114 NAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGP 191 (524)
Q Consensus 114 ~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~g 191 (524)
.+|+|.|.+ .......+|+.++++ | +..|+..|++|++........+.+ .++|.|..|
T Consensus 260 g~d~i~iD~---~~g~~~~~~~~i~~i---k------------~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg 317 (505)
T PLN02274 260 GVDVVVLDS---SQGDSIYQLEMIKYI---K------------KTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVG 317 (505)
T ss_pred CCCEEEEeC---CCCCcHHHHHHHHHH---H------------HhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEEC
Confidence 468888865 244556678888876 1 235788898998865544455544 579998654
No 320
>PLN02540 methylenetetrahydrofolate reductase
Probab=38.34 E-value=6.2e+02 Score=28.43 Aligned_cols=111 Identities=18% Similarity=0.308 Sum_probs=60.6
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccc-ccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRL-SEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~-~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
|.++.+.|.+.+..+.+.|++.|..+..+.... +..|.. .++| ....+|++.+.+..
T Consensus 68 rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~------------~d~~~~~~g~F----------~~A~dLV~~Ir~~~ 125 (565)
T PLN02540 68 TNMPVEKIDHALETIKSNGIQNILALRGDPPHG------------QDKFVQVEGGF----------ACALDLVKHIRSKY 125 (565)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC------------CCCcCCCCCCc----------ccHHHHHHHHHHhC
Confidence 456677888899999899999986654443322 111100 1122 23567777777654
Q ss_pred Cc-eEEEEec---CCCCCCCH----------HHHHHHH-cCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHH
Q 041524 340 PE-MRFRYTS---PHPKDFPD----------ELLYIMR-DRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIR 404 (524)
Q Consensus 340 ~~-~~ir~~s---~~p~~~~~----------elL~~l~-~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir 404 (524)
+. +.+.+.. -||...+. ..++.|+ +..+|+.++.- .| -|+.+.+.+.++.+|
T Consensus 126 gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiIT-----------Ql--fFD~d~f~~f~~~~r 192 (565)
T PLN02540 126 GDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIIT-----------QL--FYDTDIFLKFVNDCR 192 (565)
T ss_pred CCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCEEee-----------cc--ccCHHHHHHHHHHHH
Confidence 42 4454431 24433211 2233333 22236664321 11 367888889999999
Q ss_pred Hh
Q 041524 405 QI 406 (524)
Q Consensus 405 ~~ 406 (524)
+.
T Consensus 193 ~~ 194 (565)
T PLN02540 193 QI 194 (565)
T ss_pred hc
Confidence 88
No 321
>PLN02757 sirohydrochlorine ferrochelatase
Probab=38.31 E-value=79 Score=28.98 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHH
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQ 470 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~ 470 (524)
.+++.++++.+++..+...+..-|+- =++-++.++++.+.+.+.+.+.+.+|...+|.+... ++|..+..
T Consensus 29 ~~~~~~la~~l~~~~~~~~V~~aFle----~~~Psl~eal~~l~~~g~~~vvVvP~FL~~G~H~~~----DIp~~v~~ 98 (154)
T PLN02757 29 NLMLEEFVAMYKQKTGHPIVEPAHME----LAEPSIKDAFGRCVEQGASRVIVSPFFLSPGRHWQE----DIPALTAE 98 (154)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEe----cCCCCHHHHHHHHHHCCCCEEEEEEhhhcCCcchHh----HHHHHHHH
Confidence 45666777777665333345555543 133467788888888899999999999999987753 55655543
No 322
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=38.05 E-value=3.1e+02 Score=28.39 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhhCCceEEEEecCCCCCCCH----HHHHHHHcCCCCcceeecCcCCc--CHHHHhhhCCCCCHHHHHHH
Q 041524 326 LRFADLLDRLSLEFPEMRFRYTSPHPKDFPD----ELLYIMRDRPNVCKYIHLPAQTG--NSAVLERMRRGYTREAYLDL 399 (524)
Q Consensus 326 ~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~----elL~~l~~~~~G~~~i~igiESg--s~~vL~~m~R~~t~e~~~~~ 399 (524)
..+.++++.+....+...+.++--.|-..++ ++++.+++.+ +...+.++.-+. .+.. + + .++
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~-~~~~IRi~tr~~~~~P~r---i----t----~el 212 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIP-HLVRLRIGTRLPVVIPQR---I----T----DEL 212 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcC-CccEEEeecCCCccCchh---c----C----HHH
Confidence 4566677776654344567777667766665 3455555542 344555554331 1111 1 1 155
Q ss_pred HHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeE
Q 041524 400 VQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMA 443 (524)
Q Consensus 400 v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~ 443 (524)
++.+++. |+.+..-...+.|.|..++..+.++.+.+.++...
T Consensus 213 ~~~L~~~--~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~ 254 (331)
T TIGR00238 213 CELLASF--ELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLL 254 (331)
T ss_pred HHHHHhc--CCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEE
Confidence 5566666 65544444567788888888999999998887643
No 323
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=38.00 E-value=3.3e+02 Score=28.45 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCcEEEEEeccCC
Q 041524 270 KEVDELWKEGVKEVTLLGQNVN 291 (524)
Q Consensus 270 ~Ei~~l~~~G~kei~l~d~n~~ 291 (524)
+.++.+.+.|++.|.+--|.++
T Consensus 104 e~l~~lk~~G~nrisiGvQS~~ 125 (353)
T PRK05904 104 SQINLLKKNKVNRISLGVQSMN 125 (353)
T ss_pred HHHHHHHHcCCCEEEEecccCC
Confidence 5566677779999988776654
No 324
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=37.99 E-value=5.9e+02 Score=28.11 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEe
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLG 287 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d 287 (524)
.+.++.+.=++.+.+.|+..|...|
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~G 48 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWG 48 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecC
Confidence 4566777766777777988887764
No 325
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=37.98 E-value=2.2e+02 Score=28.21 Aligned_cols=80 Identities=9% Similarity=0.009 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.|.| .++.. .+..+.++++.+.+..+..
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~D-T~G~~------------------------------~P~~v~~lv~~l~~~~~~~ 186 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVTD-SAGAM------------------------------LPDDVRERVRALREALDPT 186 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC-CCCCc------------------------------CHHHHHHHHHHHHHhCCCc
Confidence 4678899999999889999998865 43322 1357888888888776543
Q ss_pred EEEEecCCC--CCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 343 RFRYTSPHP--KDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 343 ~ir~~s~~p--~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
.+.+. .|- ..-....+..+. + |+.+++-.+-
T Consensus 187 ~l~~H-~Hn~~GlA~AN~laAi~-a--Ga~~vd~s~~ 219 (263)
T cd07943 187 PVGFH-GHNNLGLAVANSLAAVE-A--GATRIDGSLA 219 (263)
T ss_pred eEEEE-ecCCcchHHHHHHHHHH-h--CCCEEEeecc
Confidence 45454 221 111233455553 4 9999886554
No 326
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=37.90 E-value=6.5e+02 Score=28.51 Aligned_cols=231 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCE
Q 041524 84 YGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPK 163 (524)
Q Consensus 84 ~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 163 (524)
++=+|...|...++..|.+.||.. ++....|-+=. .++.-.+. =|.+|+.+ ++..|+.+
T Consensus 19 ~atr~~t~d~~~ia~~~d~~g~~s-iE~~gGatfd~----~~rfl~ed-pwerl~~~---------------r~~~pnt~ 77 (596)
T PRK14042 19 IATRMRTEDMLPICNKMDDVGFWA-MEVWGGATFDA----CLRFLKED-PWSRLRQL---------------RQALPNTQ 77 (596)
T ss_pred hhcCCCHHHHHHHHHHHHhcCCCE-EEeeCCcccce----eecccCCC-HHHHHHHH---------------HHhCCCCc
Q ss_pred EEEE-----cccccccHHHHHhh------CCcceEEECCCCcccHHHHHHHHhcCCCccccccccccccccCCCccccCC
Q 041524 164 IVVL-----GCMAERLKDKILDA------DKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKN 232 (524)
Q Consensus 164 Ivvg-----G~~at~~~e~~l~~------~~~vD~Vv~gege~~l~~Ll~~~~~g~~~~~~~~~~~~~~~~l~p~r~~~~ 232 (524)
+-+. ...-..+|+.+.+. ..++|++=..++-.+++.+...+.. ....
T Consensus 78 lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~----------------------~k~~ 135 (596)
T PRK14042 78 LSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDA----------------------IKSH 135 (596)
T ss_pred eEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHH----------------------HHHc
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
+..+...+ +|...| ..+++.+++-++.+.+.|+..|.|-|-.=...
T Consensus 136 G~~~~~~i--------~yt~sp-------~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~------------------- 181 (596)
T PRK14042 136 KKHAQGAI--------CYTTSP-------VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLT------------------- 181 (596)
T ss_pred CCEEEEEE--------EecCCC-------CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCC-------------------
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH----------
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA---------- 382 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~---------- 382 (524)
+....+|+.++.+..+ ..+.+.+-+-..+.-.-.-...++ |+..|+..+.+.+..
T Consensus 182 ------------P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAiea--Gad~iD~ai~glGg~tGn~~tE~lv 246 (596)
T PRK14042 182 ------------PTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLA--GCNHIDTAISSFSGGASHPPTEALV 246 (596)
T ss_pred ------------HHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHh--CCCEEEeccccccCCCCcHhHHHHH
Q ss_pred -HHhhhCC--CCCHHHHHHHHHHHHHh
Q 041524 383 -VLERMRR--GYTREAYLDLVQKIRQI 406 (524)
Q Consensus 383 -vL~~m~R--~~t~e~~~~~v~~ir~~ 406 (524)
.|+.++. +.+.+.+.++.+.+++.
T Consensus 247 ~~L~~~g~~tgidl~~l~~~~~~~~~v 273 (596)
T PRK14042 247 AALTDTPYDTELDLNILLEIDDYFKAV 273 (596)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
No 327
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=37.65 E-value=1.5e+02 Score=27.97 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCCCEEEEEccccccc-HHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCC
Q 041524 159 KHPPKIVVLGCMAERL-KDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQK 209 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~-~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~ 209 (524)
.|..+|++...+.... -...++ ....+|+..+.....|.+.+..+..|..
T Consensus 78 ~~~~~iIvls~~~~~~~~~~a~~-~Ga~~yl~K~~~~~~l~~ai~~v~~g~~ 128 (216)
T PRK10840 78 FPSLSIIVLTMNNNPAILSAVLD-LDIEGIVLKQGAPTDLPKALAALQKGKK 128 (216)
T ss_pred CCCCcEEEEEecCCHHHHHHHHH-CCCeEEEECCCCHHHHHHHHHHHHCCCe
Confidence 3666666655444322 233343 3455778887777777777777666653
No 328
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=37.57 E-value=2e+02 Score=27.83 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.|.| .++.. .+..+.+++..+.+..+..
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~D-t~G~~------------------------------~P~~v~~lv~~~~~~~~~~ 182 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLAD-TVGIM------------------------------TPEDVAELVRALREALPDI 182 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEE-TTS-S-------------------------------HHHHHHHHHHHHHHSTTS
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeC-ccCCc------------------------------CHHHHHHHHHHHHHhccCC
Confidence 4678899889999888999998886 33322 1356889999999887766
Q ss_pred EEEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcCC
Q 041524 343 RFRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQT 378 (524)
Q Consensus 343 ~ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiES 378 (524)
.+.+..-+ ...-....+..+. + |+.+|+..+-.
T Consensus 183 ~l~~H~Hnd~Gla~An~laA~~-a--Ga~~id~t~~G 216 (237)
T PF00682_consen 183 PLGFHAHNDLGLAVANALAALE-A--GADRIDGTLGG 216 (237)
T ss_dssp EEEEEEBBTTS-HHHHHHHHHH-T--T-SEEEEBGGG
T ss_pred eEEEEecCCccchhHHHHHHHH-c--CCCEEEccCcc
Confidence 66665321 1112344555554 4 99999876553
No 329
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=37.52 E-value=1.5e+02 Score=31.02 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=39.6
Q ss_pred HHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHH--HhCCCcEE
Q 041524 335 LSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIR--QIIPDVGL 412 (524)
Q Consensus 335 l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir--~~~pgi~i 412 (524)
+.+..|.+.+.+++ ....-+.+.++.+++. |..++-++-| .+.+++.+..+.+- +. .+.+
T Consensus 107 ~~e~~p~l~ih~S~-q~~v~N~~~~~f~~~~--G~~rvVl~rE-------------ls~~ei~~i~~~~~~vei--EvfV 168 (347)
T COG0826 107 ARERGPDLPIHVST-QANVTNAETAKFWKEL--GAKRVVLPRE-------------LSLEEIKEIKEQTPDVEI--EVFV 168 (347)
T ss_pred HHHhCCCCcEEEee-eEecCCHHHHHHHHHc--CCEEEEeCcc-------------CCHHHHHHHHHhCCCceE--EEEE
Confidence 33445566665542 2233467788888887 8888877755 45566655555542 22 3344
Q ss_pred EEeEEEcCCC
Q 041524 413 SSDFICGFCG 422 (524)
Q Consensus 413 ~~~fI~G~Pg 422 (524)
+..+.+.++|
T Consensus 169 hGalcia~Sg 178 (347)
T COG0826 169 HGALCIAYSG 178 (347)
T ss_pred ecchhhccCc
Confidence 4555555544
No 330
>PRK14847 hypothetical protein; Provisional
Probab=37.01 E-value=3e+02 Score=28.64 Aligned_cols=124 Identities=12% Similarity=0.020 Sum_probs=74.8
Q ss_pred HHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHH
Q 041524 357 ELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMK 436 (524)
Q Consensus 357 elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~ 436 (524)
++.+.|.+. |+..|.+|+=+.|+.- .+.++.+.+. +....---|.++.--..+|+..+++...
T Consensus 58 ~IA~~L~~l--GVd~IEvG~Pa~s~~e-------------~e~ir~I~~~--~~~~~~~~i~~~~r~~~~dId~a~e~~~ 120 (333)
T PRK14847 58 RLFEQLVAV--GLKEIEVAFPSASQTD-------------FDFVRKLIDE--RRIPDDVTIEALTQSRPDLIARTFEALA 120 (333)
T ss_pred HHHHHHHHc--CCCEEEeeCCCCCHHH-------------HHHHHHHHHh--CCCCCCcEEEEEecCcHHHHHHHHHHhC
Confidence 466777888 9999999998877553 3345555554 2100112467777778899999999888
Q ss_pred HcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCC--EEEEEEeccCC
Q 041524 437 AVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGT--VQLVLVEGPNK 505 (524)
Q Consensus 437 ~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~~~~~~~~~~~~~~vG~--~~~vLve~~~~ 505 (524)
..+...+++|. |.++++...+=....+...++..+.....++.... .-|. .+.+=.|..++
T Consensus 121 ~~~~~~Vhi~~----p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~----~~g~~~~V~~~~EDasR 183 (333)
T PRK14847 121 GSPRAIVHLYN----PIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADA----NPGTQWIYEYSPETFSL 183 (333)
T ss_pred CCCCCEEEEEe----cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc----cCCCceEEEEeeecCCC
Confidence 88778777763 56666643322334444445555555444443211 1133 45666666654
No 331
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=37.01 E-value=3.7e+02 Score=26.20 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=52.5
Q ss_pred HHHHHHHHHHCCCeeccCC----------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCC
Q 041524 93 MEIVLSIMKNAGYSEVINV----------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPP 162 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~~----------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 162 (524)
.+.+...|.+.||++.... .. +|+|++.-+.... ...++.+.+|.. ....+
T Consensus 13 ~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~-dG~~~~~~iR~~-----------------~~~~~ 73 (229)
T COG0745 13 AELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDL-DGLELCRRLRAK-----------------KGSGP 73 (229)
T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECCCCCC-CHHHHHHHHHhh-----------------cCCCC
Confidence 5778899999999763221 13 9999997776633 333445444421 12333
Q ss_pred -EEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 163 -KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 163 -~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
.|++.........-..++ ...=||+..+ -...+|+..+.
T Consensus 74 PIi~Lta~~~~~d~v~gl~-~GADDYl~KP---f~~~EL~ARi~ 113 (229)
T COG0745 74 PIIVLTARDDEEDRVLGLE-AGADDYLTKP---FSPRELLARLR 113 (229)
T ss_pred cEEEEECCCcHHHHHHHHh-CcCCeeeeCC---CCHHHHHHHHH
Confidence 455666544444444444 2334899988 45566666553
No 332
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=36.77 E-value=5.1e+02 Score=28.51 Aligned_cols=122 Identities=14% Similarity=0.215 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceE
Q 041524 264 PVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMR 343 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 343 (524)
.++. ++.++.|++.|+.-|.+-.. . |. .....+.++++.+..|...
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a----~------------G~-----------------s~~~~~~i~~ik~~~~~~~ 284 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSS----Q------------GN-----------------SIYQIDMIKKLKSNYPHVD 284 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecC----C------------CC-----------------chHHHHHHHHHHhhCCCce
Confidence 3444 88999999999988876431 1 21 1124567788877666544
Q ss_pred EEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh-hhCCCC-CHHHHHHHHHHHHHhCCCcEEEEeEEE--c
Q 041524 344 FRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE-RMRRGY-TREAYLDLVQKIRQIIPDVGLSSDFIC--G 419 (524)
Q Consensus 344 ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~-~m~R~~-t~e~~~~~v~~ir~~~pgi~i~~~fI~--G 419 (524)
+-.. ...+.+-.+.+.++ |+..|.+|+-+|+-..-+ .++-|. +...+.++.+.+++. ++. +|. |
T Consensus 285 v~aG----~V~t~~~a~~~~~a--Gad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~--~v~----vIadGG 352 (495)
T PTZ00314 285 IIAG----NVVTADQAKNLIDA--GADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER--GVP----CIADGG 352 (495)
T ss_pred EEEC----CcCCHHHHHHHHHc--CCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc--CCe----EEecCC
Confidence 4332 34577778888888 999999998877643221 112222 345566666666666 654 555 4
Q ss_pred CCCCCHHHHHHHHH
Q 041524 420 FCGETEEEHADTLT 433 (524)
Q Consensus 420 ~PgET~ed~~~tl~ 433 (524)
. -|..|+.+.+.
T Consensus 353 i--~~~~di~kAla 364 (495)
T PTZ00314 353 I--KNSGDICKALA 364 (495)
T ss_pred C--CCHHHHHHHHH
Confidence 3 46777766554
No 333
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=36.62 E-value=78 Score=27.87 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcC-------CCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGF-------CGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~-------PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
+.+....+.+++.+|+..+..-|+-.. .|....++.+.++-+.+.++.++.+.++...||-.
T Consensus 17 ~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e 85 (127)
T cd03412 17 KTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEE 85 (127)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHH
Confidence 456677777888889888887777411 02334566678888888899999999999999954
No 334
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=35.75 E-value=4.8e+02 Score=26.42 Aligned_cols=139 Identities=16% Similarity=0.107 Sum_probs=75.0
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-.+.+.++=++=++.|.+.|+++|.+. |... + ..-.+.++.+.+..
T Consensus 17 g~~~s~~~Ki~ia~~L~~~Gv~~IE~g---fP~~------------~-------------------~~e~e~~~~i~~~~ 62 (284)
T cd07942 17 AEPMSVEQKLRFFKLLVKIGFKEIEVG---FPSA------------S-------------------QTDFDFVRELIEED 62 (284)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCC------------C-------------------HHHHHHHHHHHHcc
Confidence 467899999999999999999998764 3322 1 11235555554331
Q ss_pred ---CceEEEEecCCCCCCCHHHHHHHHcCCCCcc--eeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCcE-
Q 041524 340 ---PEMRFRYTSPHPKDFPDELLYIMRDRPNVCK--YIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDVG- 411 (524)
Q Consensus 340 ---~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~--~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~- 411 (524)
+..++..-... ..+-++...++..|+. .+++-+-+.+....+.+++.. ..+.+.+.++.+++. |+.
T Consensus 63 ~~~~~~~~~al~r~----~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~--g~~~ 136 (284)
T cd07942 63 LIPDDVTIQVLTQA----REDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKEL--AAKY 136 (284)
T ss_pred CCCCCCEEEEEcCC----ChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccc
Confidence 12233221111 1121333333212454 576665544444455666643 456677788888887 543
Q ss_pred EEEeEEEcCCCC----C-HHHHHHHHHHHHHc
Q 041524 412 LSSDFICGFCGE----T-EEEHADTLTLMKAV 438 (524)
Q Consensus 412 i~~~fI~G~PgE----T-~ed~~~tl~~l~~l 438 (524)
+++.|.+-|-+| + .+.+.+.++.+.+.
T Consensus 137 ~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 137 PETDWRFEYSPESFSDTELDFALEVCEAVIDV 168 (284)
T ss_pred cCceEEEEECCccCCCCCHHHHHHHHHHHHHh
Confidence 445566666563 2 34444444444444
No 335
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=35.66 E-value=5.9e+02 Score=27.39 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=81.1
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
||.++-+-|-.=++...+.|+.-|.+.| .+|. .+++..-++.+.+..
T Consensus 92 YrhyaDDvVe~Fv~ka~~nGidvfRiFD-AlND--------------------------------~RNl~~ai~a~kk~G 138 (472)
T COG5016 92 YRHYADDVVEKFVEKAAENGIDVFRIFD-ALND--------------------------------VRNLKTAIKAAKKHG 138 (472)
T ss_pred ccCCchHHHHHHHHHHHhcCCcEEEech-hccc--------------------------------hhHHHHHHHHHHhcC
Confidence 5666655555667777888998887765 2221 235666777777766
Q ss_pred CceEEEEec-CCCCC---CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCC-CcEEEE
Q 041524 340 PEMRFRYTS-PHPKD---FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIP-DVGLSS 414 (524)
Q Consensus 340 ~~~~ir~~s-~~p~~---~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~p-gi~i~~ 414 (524)
.+....+++ ..|-+ .=.++.+.|.+. ||.+|.| |-|.--.+.....++|+.+++.++ .+.+++
T Consensus 139 ~h~q~~i~YT~sPvHt~e~yv~~akel~~~--g~DSIci----------KDmaGlltP~~ayelVk~iK~~~~~pv~lHt 206 (472)
T COG5016 139 AHVQGTISYTTSPVHTLEYYVELAKELLEM--GVDSICI----------KDMAGLLTPYEAYELVKAIKKELPVPVELHT 206 (472)
T ss_pred ceeEEEEEeccCCcccHHHHHHHHHHHHHc--CCCEEEe----------ecccccCChHHHHHHHHHHHHhcCCeeEEec
Confidence 554433332 23322 225666777777 8887776 445444688899999999999865 234556
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHcCCCeEE
Q 041524 415 DFICGFCGETEEEHADTLTLMKAVGYDMAY 444 (524)
Q Consensus 415 ~fI~G~PgET~ed~~~tl~~l~~l~~d~~~ 444 (524)
+-..|+ -..+.--..+.+.|.+-
T Consensus 207 H~TsG~-------a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 207 HATSGM-------AEMTYLKAVEAGVDGID 229 (472)
T ss_pred ccccch-------HHHHHHHHHHhCcchhh
Confidence 656665 22233333345666654
No 336
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=35.62 E-value=2.4e+02 Score=27.20 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEE
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR 345 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir 345 (524)
+++.+.++.+.+.|+..|.+.+ + ....+ +.+..+.+.+.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~--~------------------------------------g~~~~---~k~~~~~~~i~ 40 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN--P------------------------------------GLLEL---LKELGPDLKII 40 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC--H------------------------------------HHHHH---HHHhCCCCcEE
Confidence 5677777888888998876542 1 12333 33444555655
Q ss_pred EecCCCCCCCHHHHHHHHcCCCCcceeecCcCC
Q 041524 346 YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQT 378 (524)
Q Consensus 346 ~~s~~p~~~~~elL~~l~~~~~G~~~i~igiES 378 (524)
.. .....++.+.++.+++. |+..+.++.|-
T Consensus 41 ~~-~~~nv~N~~s~~~~~~~--G~~~i~ls~EL 70 (233)
T PF01136_consen 41 AD-YSLNVFNSESARFLKEL--GASRITLSPEL 70 (233)
T ss_pred Ee-cCccCCCHHHHHHHHHc--CCCEEEECccC
Confidence 54 33445788999999998 99999998885
No 337
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=35.44 E-value=4.1e+02 Score=25.48 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=57.4
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..+.++.++-++.+.+-|++-+.+.-.+- ...+.++.+.+..
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~------------------------------------~~~~~i~~l~~~~ 59 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNSP------------------------------------DPFDSIAALVKAL 59 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc------------------------------------cHHHHHHHHHHHc
Confidence 4667899999999999999999887763221 1233555555544
Q ss_pred C-ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC
Q 041524 340 P-EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR 388 (524)
Q Consensus 340 ~-~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~ 388 (524)
+ .+-+...+ .++.+.++...++ |...++.|-. ++++.+..+
T Consensus 60 ~~~~~iGaGT----V~~~~~~~~a~~a--GA~fivsp~~--~~~v~~~~~ 101 (206)
T PRK09140 60 GDRALIGAGT----VLSPEQVDRLADA--GGRLIVTPNT--DPEVIRRAV 101 (206)
T ss_pred CCCcEEeEEe----cCCHHHHHHHHHc--CCCEEECCCC--CHHHHHHHH
Confidence 4 24444443 3677888888888 9999999754 455555443
No 338
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=35.35 E-value=4.4e+02 Score=25.83 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=79.6
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcc------ccccCcccchhcccchhhHHHHHHHHH
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANW------RLSEGFNSMCKVKKMGLRFADLLDRLS 336 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~------~~~~g~~~~~~~~~~~~~~~~Ll~~l~ 336 (524)
.+.+...++++.+.+.|+.-+.+-= ..+.. ...|... .+..|+. .....++++++.
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdP--------v~DG~~I~~a~~~al~~g~~--------~~~~~~~~~~vr 72 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDP--------VADGPVIQAASERALANGVT--------LKDVLELVKEIR 72 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCC--------CCCCHHHHHHHHHHHHcCCC--------HHHHHHHHHHHh
Confidence 4568889999999999998877631 11110 0002100 0000000 013445566665
Q ss_pred hhCCceEEE-EecCCCCCC--CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEE
Q 041524 337 LEFPEMRFR-YTSPHPKDF--PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLS 413 (524)
Q Consensus 337 ~~~~~~~ir-~~s~~p~~~--~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~ 413 (524)
+.. ...+. .++.+|-.- .+.+++.++++ |+..+.++=. ..|+..+.++.++++ |+...
T Consensus 73 ~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~a--G~~giiipDl--------------~~ee~~~~~~~~~~~--g~~~i 133 (242)
T cd04724 73 KKN-TIPIVLMGYYNPILQYGLERFLRDAKEA--GVDGLIIPDL--------------PPEEAEEFREAAKEY--GLDLI 133 (242)
T ss_pred hcC-CCCEEEEEecCHHHHhCHHHHHHHHHHC--CCcEEEECCC--------------CHHHHHHHHHHHHHc--CCcEE
Confidence 432 11222 223343222 27789999999 9999998622 246788899999998 75422
Q ss_pred EeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 414 SDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 414 ~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
+++. |.-+.+.++.. .+...+.+ +..+..|+|-..
T Consensus 134 --~~i~-P~T~~~~i~~i----~~~~~~~v--y~~s~~g~tG~~ 168 (242)
T cd04724 134 --FLVA-PTTPDERIKKI----AELASGFI--YYVSRTGVTGAR 168 (242)
T ss_pred --EEeC-CCCCHHHHHHH----HhhCCCCE--EEEeCCCCCCCc
Confidence 2222 55455555443 33234544 445566666543
No 339
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=35.30 E-value=5.5e+02 Score=26.97 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=76.9
Q ss_pred HHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEec
Q 041524 269 VKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTS 348 (524)
Q Consensus 269 v~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s 348 (524)
.+-++.|.+.|+.-|.+-..+ |. .....+.++.+.+..|...+-...
T Consensus 110 ~er~~~L~~agvD~ivID~a~----------------g~-----------------s~~~~~~ik~ik~~~~~~~viaGN 156 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAH----------------GH-----------------SEHVIDMIKKIKKKFPDVPVIAGN 156 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SS----------------TT-----------------SHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHHHHHcCCCEEEccccC----------------cc-----------------HHHHHHHHHHHHHhCCCceEEecc
Confidence 566777888898766543222 11 245778888898888866554432
Q ss_pred CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh---hCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCH
Q 041524 349 PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER---MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETE 425 (524)
Q Consensus 349 ~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~---m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ 425 (524)
..+.+..+.|.++ |...|-+|+=+||--+-+. ++++ ....+.+..+..+++ ++.|.+|==+ .+.
T Consensus 157 ----V~T~e~a~~L~~a--Gad~vkVGiGpGsiCtTr~v~GvG~P-Q~tAv~~~a~~a~~~--~v~iIADGGi----~~s 223 (352)
T PF00478_consen 157 ----VVTYEGAKDLIDA--GADAVKVGIGPGSICTTREVTGVGVP-QLTAVYECAEAARDY--GVPIIADGGI----RTS 223 (352)
T ss_dssp ----E-SHHHHHHHHHT--T-SEEEESSSSSTTBHHHHHHSBSCT-HHHHHHHHHHHHHCT--TSEEEEESS-----SSH
T ss_pred ----cCCHHHHHHHHHc--CCCEEEEeccCCcccccccccccCCc-HHHHHHHHHHHhhhc--cCceeecCCc----Ccc
Confidence 2467777778788 9999999999998655443 3333 466788888888888 8888777322 345
Q ss_pred HHHHHHHH
Q 041524 426 EEHADTLT 433 (524)
Q Consensus 426 ed~~~tl~ 433 (524)
-|+-+.+.
T Consensus 224 GDi~KAla 231 (352)
T PF00478_consen 224 GDIVKALA 231 (352)
T ss_dssp HHHHHHHH
T ss_pred cceeeeee
Confidence 55554443
No 340
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=34.55 E-value=1.6e+02 Score=29.13 Aligned_cols=93 Identities=20% Similarity=0.356 Sum_probs=65.6
Q ss_pred CCCCC-HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc---CCC----
Q 041524 351 PKDFP-DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG---FCG---- 422 (524)
Q Consensus 351 p~~~~-~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G---~Pg---- 422 (524)
|..++ .|.|..-++. |+..|.+++.-. ++-|.++ ..+.++...+++.+.+. |+.+.+--..+ ||-
T Consensus 15 p~~~sW~erl~~AK~~--GFDFvEmSvDEs-DeRLaRL--DWs~~er~~l~~ai~et--gv~ipSmClSaHRRfPfGS~D 87 (287)
T COG3623 15 PNGFSWLERLALAKEL--GFDFVEMSVDES-DERLARL--DWSKEERLALVNAIQET--GVRIPSMCLSAHRRFPFGSKD 87 (287)
T ss_pred cCCCCHHHHHHHHHHc--CCCeEEEeccch-HHHHHhc--CCCHHHHHHHHHHHHHh--CCCccchhhhhhccCCCCCCC
Confidence 33343 6788888888 999999998754 3444444 47899999999999999 77765544433 232
Q ss_pred C-----CHHHHHHHHHHHHHcCCCeEEEEeeec
Q 041524 423 E-----TEEEHADTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 423 E-----T~ed~~~tl~~l~~l~~d~~~i~~~sp 450 (524)
+ ..+-+++.+.+.+++++-.+++..|-.
T Consensus 88 ~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDV 120 (287)
T COG3623 88 EATRQQALEIMEKAIQLAQDLGIRTIQLAGYDV 120 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceeEeecccee
Confidence 2 223456677888889999888877644
No 341
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.34 E-value=5.6e+02 Score=27.46 Aligned_cols=122 Identities=13% Similarity=0.208 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEE
Q 041524 267 SIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRY 346 (524)
Q Consensus 267 ~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~ 346 (524)
+-.++++.|++.|+.-|.+-..+ |. ...+.++++.+.+..|...+-.
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~----------------g~-----------------~~~~~~~v~~ik~~~p~~~vi~ 199 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAH----------------GH-----------------STRIIELVKKIKTKYPNLDLIA 199 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC----------------CC-----------------ChhHHHHHHHHHhhCCCCcEEE
Confidence 35789999999998877662211 11 2357888888888766544322
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh-hCCCC-CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCC
Q 041524 347 TSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER-MRRGY-TREAYLDLVQKIRQIIPDVGLSSDFICGFCGET 424 (524)
Q Consensus 347 ~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~-m~R~~-t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET 424 (524)
. ...+.+....+.++ |+..|.+|+..++--.-+. .+-+. ....+.++.+.+++. ++.+.+|= |+ -+
T Consensus 200 g----~V~T~e~a~~l~~a--GaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~--~vpVIAdG--GI--~~ 267 (404)
T PRK06843 200 G----NIVTKEAALDLISV--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNT--NICIIADG--GI--RF 267 (404)
T ss_pred E----ecCCHHHHHHHHHc--CCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhc--CCeEEEeC--CC--CC
Confidence 2 23456666666677 9999999998877322111 11122 344444444444444 55543331 11 47
Q ss_pred HHHHHHHHH
Q 041524 425 EEEHADTLT 433 (524)
Q Consensus 425 ~ed~~~tl~ 433 (524)
.+|+.+.+.
T Consensus 268 ~~Di~KALa 276 (404)
T PRK06843 268 SGDVVKAIA 276 (404)
T ss_pred HHHHHHHHH
Confidence 777766655
No 342
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=33.92 E-value=4.7e+02 Score=25.71 Aligned_cols=92 Identities=11% Similarity=0.063 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC---CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHH
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR---GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTL 432 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R---~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl 432 (524)
+++++..+....++..|.|.+-.-.+++.+.=.- ..+.+.+.+.++.+++. ++.++.=+=.|. +.++..+..
T Consensus 80 ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~---~~~~~~~~a 154 (231)
T TIGR00736 80 EEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC---IPLDELIDA 154 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC---CcchHHHHH
Confidence 3444444433237888888776666666532111 13678888888888876 666665555554 334555667
Q ss_pred HHHHHcCCCeEEEEeeecCCCC
Q 041524 433 TLMKAVGYDMAYMFAYSMRERT 454 (524)
Q Consensus 433 ~~l~~l~~d~~~i~~~sp~pGT 454 (524)
+.+.+.+.+.+++.. .++|.
T Consensus 155 ~~l~~aGad~i~Vd~--~~~g~ 174 (231)
T TIGR00736 155 LNLVDDGFDGIHVDA--MYPGK 174 (231)
T ss_pred HHHHHcCCCEEEEee--CCCCC
Confidence 778899999998864 34443
No 343
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=33.90 E-value=4e+02 Score=27.17 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC----CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHH
Q 041524 351 PKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG----YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEE 426 (524)
Q Consensus 351 p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~----~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~e 426 (524)
|..++.--..+..++ |++-+.++ +-.+-..++.+ .|.++++..++.|.+.. ++.+..|+=.|| |+ ..
T Consensus 23 pg~~d~~sA~la~~a--GF~al~~s----g~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~-~lPv~vD~dtGf-G~-~~ 93 (289)
T COG2513 23 PGAWDAGSALLAERA--GFKALYLS----GAGVAASLGLPDLGITTLDEVLADARRITDAV-DLPVLVDIDTGF-GE-AL 93 (289)
T ss_pred cCCcCHHHHHHHHHc--CCeEEEec----cHHHHHhcCCCccccccHHHHHHHHHHHHhhc-CCceEEeccCCC-Cc-HH
Confidence 344677677777787 99988874 33344456553 36999999999998873 778999999999 77 99
Q ss_pred HHHHHHHHHHHcCCCeEEEEe
Q 041524 427 EHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 427 d~~~tl~~l~~l~~d~~~i~~ 447 (524)
...+|+..+.+.+..-+++--
T Consensus 94 nvartV~~~~~aG~agi~iED 114 (289)
T COG2513 94 NVARTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHHHHcCcceeeeee
Confidence 999999999999998877744
No 344
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=33.73 E-value=3.8e+02 Score=25.56 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=49.5
Q ss_pred HHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC------CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHH
Q 041524 358 LLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY------TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADT 431 (524)
Q Consensus 358 lL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~------t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~t 431 (524)
..+.+.++ |+..|.|.+=+.+.... +.++ ..+...+.++.+++..+ +.+...+=.|... .++..+.
T Consensus 72 aa~~~~~a--G~d~ieln~g~p~~~~~---~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~--~~~~~~~ 143 (231)
T cd02801 72 AAKIVEEL--GADGIDLNMGCPSPKVT---KGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDD--EEETLEL 143 (231)
T ss_pred HHHHHHhc--CCCEEEEeCCCCHHHHh---CCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCC--chHHHHH
Confidence 34444555 88887665433332221 1222 56778888888888754 4455554444321 1577777
Q ss_pred HHHHHHcCCCeEEEEe
Q 041524 432 LTLMKAVGYDMAYMFA 447 (524)
Q Consensus 432 l~~l~~l~~d~~~i~~ 447 (524)
+..+.+.+++.+.+..
T Consensus 144 ~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 144 AKALEDAGASALTVHG 159 (231)
T ss_pred HHHHHHhCCCEEEECC
Confidence 7888888998887754
No 345
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=33.62 E-value=4.6e+02 Score=25.57 Aligned_cols=25 Identities=8% Similarity=0.020 Sum_probs=16.7
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEe
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLG 287 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d 287 (524)
++..|.++.++.++. .|++.|.+..
T Consensus 12 ~~~~~l~~~l~~~a~---~Gf~~VEl~~ 36 (258)
T PRK09997 12 FGEYDFLARFEKAAQ---CGFRGVEFMF 36 (258)
T ss_pred ccCCCHHHHHHHHHH---hCCCEEEEcC
Confidence 455677777655554 4999988853
No 346
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=33.37 E-value=4.5e+02 Score=27.29 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCcEEEEEeccCC
Q 041524 270 KEVDELWKEGVKEVTLLGQNVN 291 (524)
Q Consensus 270 ~Ei~~l~~~G~kei~l~d~n~~ 291 (524)
+.++.+.+.|++.|.+--|.++
T Consensus 99 e~l~~l~~~GvnRiSiGvQS~~ 120 (350)
T PRK08446 99 AWLKGMKNLGVNRISFGVQSFN 120 (350)
T ss_pred HHHHHHHHcCCCEEEEecccCC
Confidence 5566777779999998777765
No 347
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=33.31 E-value=4.4e+02 Score=25.84 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 421 CGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 421 PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
|....|+..+.++.+++.+++.+.+
T Consensus 111 pDl~~ee~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 111 PDLPPEEAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 3444567888888888888876543
No 348
>PLN02433 uroporphyrinogen decarboxylase
Probab=32.99 E-value=5.7e+02 Score=26.43 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCc-eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecC
Q 041524 328 FADLLDRLSLEFPE-MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLP 375 (524)
Q Consensus 328 ~~~Ll~~l~~~~~~-~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~ig 375 (524)
+.++++.+....+. ..+ .|....+ .+++.|++. |+..+++.
T Consensus 219 ~k~i~~~i~~~~~~~~~i----lh~cG~~-~~~~~~~~~--~~~~i~~d 260 (345)
T PLN02433 219 LEKIVDEVKARHPDVPLI----LYANGSG-GLLERLAGT--GVDVIGLD 260 (345)
T ss_pred HHHHHHHHHHhCCCCCEE----EEeCCCH-HHHHHHHhc--CCCEEEcC
Confidence 55666776654222 122 2222323 688999998 77766654
No 349
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=32.95 E-value=5.4e+02 Score=26.18 Aligned_cols=30 Identities=10% Similarity=0.410 Sum_probs=24.2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNV 290 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~ 290 (524)
|.++...+...+..+.+.|+++|..+..+.
T Consensus 92 r~~n~~~l~~~L~~~~~~GI~niLaLrGD~ 121 (296)
T PRK09432 92 IDATPDELRTIAKDYWNNGIRHIVALRGDL 121 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 445788899999999999999988776553
No 350
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.92 E-value=2.6e+02 Score=28.49 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhC-CCcEEEEeEEEcC---CCCCHHHHHHHHHHHHHcCCCeEEEEeee
Q 041524 396 YLDLVQKIRQII-PDVGLSSDFICGF---CGETEEEHADTLTLMKAVGYDMAYMFAYS 449 (524)
Q Consensus 396 ~~~~v~~ir~~~-pgi~i~~~fI~G~---PgET~ed~~~tl~~l~~l~~d~~~i~~~s 449 (524)
..+.++.+|+.+ +++.+...+=.+. .|.|.++..+.++.+.+.+++.+++....
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 467888888875 4555554443221 34688999999999999999999876543
No 351
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=32.36 E-value=3.6e+02 Score=26.91 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHh
Q 041524 393 REAYLDLVQKIRQI 406 (524)
Q Consensus 393 ~e~~~~~v~~ir~~ 406 (524)
.++.++..+.+.+.
T Consensus 81 ~~~~~~~a~~a~~~ 94 (284)
T cd00950 81 TAEAIELTKRAEKA 94 (284)
T ss_pred HHHHHHHHHHHHHc
Confidence 34555555555555
No 352
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=32.22 E-value=2.5e+02 Score=30.64 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=53.9
Q ss_pred HHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCC
Q 041524 93 MEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPP 162 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 162 (524)
-+.+...|...||++.. .+ ...+|+|++.-+.... ....+.+.+++ ..|+.
T Consensus 17 r~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~-~Gl~ll~~i~~------------------~~~~~ 77 (464)
T COG2204 17 RELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGM-DGLELLKEIKS------------------RDPDL 77 (464)
T ss_pred HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCC-chHHHHHHHHh------------------hCCCC
Confidence 34577889999998632 22 1357999997666533 23334444432 24776
Q ss_pred EEEEEccccccc-HHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 163 KIVVLGCMAERL-KDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 163 ~IvvgG~~at~~-~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
+||+-.-|.+.. .-+.++ ...+||+.-+-.-..+..+++..
T Consensus 78 pVI~~Tg~g~i~~AV~A~k-~GA~Dfl~KP~~~~~L~~~v~ra 119 (464)
T COG2204 78 PVIVMTGHGDIDTAVEALR-LGAFDFLEKPFDLDRLLAIVERA 119 (464)
T ss_pred CEEEEeCCCCHHHHHHHHh-cCcceeeeCCCCHHHHHHHHHHH
Confidence 666544455542 223333 57799999987655555555543
No 353
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.10 E-value=5.5e+02 Score=26.00 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHCCCcEEEE
Q 041524 264 PVESIVKEVDELWKEGVKEVTL 285 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l 285 (524)
++++++++++.+.++|++.|.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKi 155 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKI 155 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 6888999999999999988876
No 354
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.09 E-value=2.9e+02 Score=28.66 Aligned_cols=82 Identities=11% Similarity=0.142 Sum_probs=52.0
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC-
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP- 340 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~- 340 (524)
..+++.+++.++.+.+.|+..|.+.| .++.. .+..+.+++..+.+..+
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~D-T~G~~------------------------------~P~~v~~~v~~l~~~l~~ 187 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVD-SAGAM------------------------------LPDDVRDRVRALKAVLKP 187 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEcc-CCCCC------------------------------CHHHHHHHHHHHHHhCCC
Confidence 35789999999999889999998886 33222 13567888888876543
Q ss_pred ceEEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcC
Q 041524 341 EMRFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 341 ~~~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiE 377 (524)
...+.|..-+-..+ ....+..+. + |+.+|+-.+-
T Consensus 188 ~i~ig~H~HnnlGla~ANslaAi~-a--Ga~~iD~Sl~ 222 (333)
T TIGR03217 188 ETQVGFHAHHNLSLAVANSIAAIE-A--GATRIDASLR 222 (333)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH-h--CCCEEEeecc
Confidence 45666653211112 133444443 4 9999876544
No 355
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=31.92 E-value=6.1e+02 Score=28.68 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEecc
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQN 289 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n 289 (524)
|-++...+.+++..+...|++.|..+..+
T Consensus 391 ~d~n~~~l~~~L~~~~~~Gv~nILaLrGD 419 (612)
T PRK08645 391 RDRNLIGLQSHLLGLHALGIRNVLAITGD 419 (612)
T ss_pred CCcCHHHHHHHHHHHHHcCCceEEEccCC
Confidence 55788899999999999999998655433
No 356
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=31.91 E-value=4.6e+02 Score=25.08 Aligned_cols=134 Identities=10% Similarity=0.058 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEE
Q 041524 267 SIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRY 346 (524)
Q Consensus 267 ~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~ 346 (524)
+.++-++.+.+.|++++.++|.+-... |. ..-.++++++.+..+ ..+.+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~------------g~------------------~~~~~~i~~i~~~~~-~pi~~ 77 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKE------------GG------------------PVNLPVIKKIVRETG-VPVQV 77 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc------------CC------------------CCcHHHHHHHHHhcC-CCEEE
Confidence 344444556677999999997654322 11 112345555554422 23322
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc------C
Q 041524 347 TSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG------F 420 (524)
Q Consensus 347 ~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G------~ 420 (524)
. ..--+.+.++.+.++ |+..+.+|..... +.+.+.++++.+... .+.++.|+--| .
T Consensus 78 g---gGI~~~ed~~~~~~~--Ga~~vvlgs~~l~-----------d~~~~~~~~~~~g~~--~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 78 G---GGIRSLEDVEKLLDL--GVDRVIIGTAAVE-----------NPDLVKELLKEYGPE--RIVVSLDARGGEVAVKGW 139 (230)
T ss_pred e---CCcCCHHHHHHHHHc--CCCEEEEChHHhh-----------CHHHHHHHHHHhCCC--cEEEEEEEECCEEEEcCC
Confidence 2 122356777777777 9999988755432 234455555444311 25556665422 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeee
Q 041524 421 CGETEEEHADTLTLMKAVGYDMAYMFAYS 449 (524)
Q Consensus 421 PgET~ed~~~tl~~l~~l~~d~~~i~~~s 449 (524)
-..+..+..+.++.+.+.+.+.+.+...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~ 168 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDIS 168 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeec
Confidence 11122344556677778888877665544
No 357
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=31.87 E-value=1.6e+02 Score=28.70 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHCCCee-ccCCC-----------CCCcEEEEeeccCcchH---HHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 92 DMEIVLSIMKNAGYSE-VINVP-----------ENAEVIFINTCAIRDYA---EHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 92 d~e~i~~~L~~~Gy~~-~~~~~-----------~~aDvv~intc~v~~~a---~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+...+...+++.|... ++-+| +..|.|++.|--.-... .....+.+++++.+..
T Consensus 94 ~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~----------- 162 (220)
T PRK08883 94 HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMID----------- 162 (220)
T ss_pred cHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHH-----------
Confidence 5777778889999753 12222 58899999654433322 1123445555433221
Q ss_pred ccCCCCEE-EEEcccccccHHHHHhhCCcceEEECCCC
Q 041524 157 QSKHPPKI-VVLGCMAERLKDKILDADKMVDVVCGPDA 193 (524)
Q Consensus 157 ~~~p~~~I-vvgG~~at~~~e~~l~~~~~vD~Vv~geg 193 (524)
++..+..| +-||.-.+.. ..+.+ .++|.++.|-+
T Consensus 163 ~~~~~~~I~vdGGI~~eni-~~l~~--aGAd~vVvGSa 197 (220)
T PRK08883 163 ESGRDIRLEIDGGVKVDNI-REIAE--AGADMFVAGSA 197 (220)
T ss_pred hcCCCeeEEEECCCCHHHH-HHHHH--cCCCEEEEeHH
Confidence 22345666 4566655543 34443 47999888744
No 358
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.44 E-value=2.9e+02 Score=28.72 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC-Cc
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF-PE 341 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~-~~ 341 (524)
.+++.+++.++.+.+.|+..|.+.| .++.. .+..+.+++..+.+.. |.
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~D-T~G~~------------------------------~P~~v~~~v~~l~~~l~~~ 189 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVD-SAGAL------------------------------LPEDVRDRVRALRAALKPD 189 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCC-CCCCC------------------------------CHHHHHHHHHHHHHhcCCC
Confidence 4889999999999999999998876 33322 1356788888887754 45
Q ss_pred eEEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcC
Q 041524 342 MRFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 342 ~~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiE 377 (524)
..+.|..-+-..+ ....+..+. + |+.+|+-.+-
T Consensus 190 i~ig~H~HnnlGla~ANslaAi~-a--Ga~~iD~Sl~ 223 (337)
T PRK08195 190 TQVGFHGHNNLGLGVANSLAAVE-A--GATRIDGSLA 223 (337)
T ss_pred CeEEEEeCCCcchHHHHHHHHHH-h--CCCEEEecCh
Confidence 6666653211111 233455553 4 9998876543
No 359
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=31.36 E-value=3.4e+02 Score=29.40 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=15.8
Q ss_pred HHHHHHHHCCCcEEEEEeccCC
Q 041524 270 KEVDELWKEGVKEVTLLGQNVN 291 (524)
Q Consensus 270 ~Ei~~l~~~G~kei~l~d~n~~ 291 (524)
+.++.+.+.|+..|.|--|.++
T Consensus 153 e~l~~L~~~G~~rvsiGvQS~~ 174 (453)
T PRK13347 153 EMLQALAALGFNRASFGVQDFD 174 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCC
Confidence 4556666679999988766654
No 360
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=31.14 E-value=25 Score=37.62 Aligned_cols=17 Identities=18% Similarity=0.610 Sum_probs=14.8
Q ss_pred cccCCccCcccccCCCC
Q 041524 241 MRGCNNMCSFCIVPFTR 257 (524)
Q Consensus 241 sRGC~~~CsFC~vp~~~ 257 (524)
+-||+..|.||..|..+
T Consensus 6 ~~gC~~~C~wC~~p~~~ 22 (404)
T TIGR03278 6 GIDCRGFCRYCYFKKVD 22 (404)
T ss_pred CCCCCCcCCCCCCCCCC
Confidence 57999999999998764
No 361
>PRK12999 pyruvate carboxylase; Reviewed
Probab=30.87 E-value=6.6e+02 Score=30.89 Aligned_cols=171 Identities=11% Similarity=0.095 Sum_probs=92.0
Q ss_pred ChHHHHHH-HHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 264 PVESIVKE-VDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 264 ~~e~Iv~E-i~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.++.++++ ++...+.|+.-|.+.| .+|. ...+...++.+.+.....
T Consensus 624 yp~~v~~~~i~~a~~~Gid~~rifd-~lnd--------------------------------~~~~~~~i~~vk~~g~~~ 670 (1146)
T PRK12999 624 YPDNVVRAFVREAAAAGIDVFRIFD-SLNW--------------------------------VENMRVAIDAVRETGKIA 670 (1146)
T ss_pred CCchHHHHHHHHHHHcCCCEEEEec-cCCh--------------------------------HHHHHHHHHHHHHcCCeE
Confidence 35666666 8888888988887764 2221 123555666666654333
Q ss_pred EEEEecC----CCCC--CC----HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEE
Q 041524 343 RFRYTSP----HPKD--FP----DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGL 412 (524)
Q Consensus 343 ~ir~~s~----~p~~--~~----~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i 412 (524)
.+.+++. +|.. .+ -++.+.+.++ |+..|.|. -|---.+.+++.++++.+++.+ ++.|
T Consensus 671 ~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~--Ga~~i~ik----------Dt~G~l~P~~~~~lv~~lk~~~-~ipi 737 (1146)
T PRK12999 671 EAAICYTGDILDPARAKYDLDYYVDLAKELEKA--GAHILAIK----------DMAGLLKPAAAYELVSALKEEV-DLPI 737 (1146)
T ss_pred EEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc--CCCEEEEC----------CccCCCCHHHHHHHHHHHHHHc-CCeE
Confidence 4444433 2211 23 2455556667 88888763 3333467899999999999875 4433
Q ss_pred EEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe--eecCCCChhcccC----C-CCCCHHHHHHHHHHHHHHHHHHHH
Q 041524 413 SSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFA--YSMRERTHAHRNY----V-DDVPEEVKQRRLTELIEAFRESTG 485 (524)
Q Consensus 413 ~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~--~sp~pGT~~~~~~----~-~~v~~~~k~~Rl~~l~~~~~~~~~ 485 (524)
..+ ...|.---..+.-...+.+.+.+.... ++-.-|-+.-..+ . -.....+..+++.++.+.+++...
T Consensus 738 ~~H-----~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~ 812 (1146)
T PRK12999 738 HLH-----THDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRP 812 (1146)
T ss_pred EEE-----eCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHh
Confidence 322 233333333333344466888776544 3344443322211 1 112223444566666666665443
No 362
>PRK03739 2-isopropylmalate synthase; Validated
Probab=30.34 E-value=7.2e+02 Score=27.79 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=73.4
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
-.+.+.++=++=++.|.+.|+++|... |... + ..-.+.++++.+..
T Consensus 46 gv~~s~~~Ki~ia~~L~~~GV~~IE~G---fP~~------------s-------------------~~e~e~v~~i~~~~ 91 (552)
T PRK03739 46 IEPMSPERKLRMFDLLVKIGFKEIEVG---FPSA------------S-------------------QTDFDFVRELIEEG 91 (552)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEE---CCCc------------C-------------------hHHHHHHHHHHHhc
Confidence 467889999999999999999998764 3222 0 01124455553331
Q ss_pred ---CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCc-EEE
Q 041524 340 ---PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDV-GLS 413 (524)
Q Consensus 340 ---~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi-~i~ 413 (524)
+...+...+......-+..++.++.+ +-..+++-+=+-+-.+.+.+++.. ..+.+.+.++.+++. +. ...
T Consensus 92 ~~~~~~~i~~l~r~~~~di~~a~~a~~~~--~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~--~~~~~~ 167 (552)
T PRK03739 92 LIPDDVTIQVLTQAREHLIERTFEALEGA--KRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKEL--AAKYPE 167 (552)
T ss_pred CCCCCCEEEEEeccchhHHHHHHHHhcCC--CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccC
Confidence 22343322222111112233344333 334677766555555555666532 355667777788877 43 223
Q ss_pred EeEEEcCCCC----CH-HHHHHHHHHHHH
Q 041524 414 SDFICGFCGE----TE-EEHADTLTLMKA 437 (524)
Q Consensus 414 ~~fI~G~PgE----T~-ed~~~tl~~l~~ 437 (524)
+.|.+-|-+| ++ +-+.+.++.+.+
T Consensus 168 ~~~~v~f~~EDasR~d~~~l~~~~~~a~~ 196 (552)
T PRK03739 168 TEWRFEYSPESFTGTELDFALEVCDAVID 196 (552)
T ss_pred ceeEEEEecccCCCCCHHHHHHHHHHHHH
Confidence 3355555556 33 334444444443
No 363
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=30.21 E-value=4.5e+02 Score=24.34 Aligned_cols=96 Identities=13% Similarity=-0.008 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcc-hHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 91 NDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRD-YAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 91 ~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
.-.+.+...|...||++.. .+ ...+|+|++....... ....+....++. ..
T Consensus 11 ~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~------------------~~ 72 (227)
T TIGR03787 11 AIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRS------------------LS 72 (227)
T ss_pred HHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHh------------------cC
Confidence 3355677778788886521 11 1368999986543221 122233333321 12
Q ss_pred CCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 160 HPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 160 p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
+..+|++...+.+. .....++ ....|++..+.....+.+.+..+.
T Consensus 73 ~~~pii~ls~~~~~~~~~~~~~-~Ga~~~l~kp~~~~~l~~~i~~~~ 118 (227)
T TIGR03787 73 ATLPIIFLTARDSDFDTVSGLR-LGADDYLTKDISLPHLLARITALF 118 (227)
T ss_pred CCCCEEEEECCCCHHHHHHHHh-cCCCEEEECCCCHHHHHHHHHHHH
Confidence 44445544333332 2223333 345678887765544544444443
No 364
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=30.02 E-value=1.6e+02 Score=31.31 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMR 451 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~ 451 (524)
+..+.+++.+..+++.+|++.+.+.++- +.+.+++.+.++.+++.+.|.+-+...+|.
T Consensus 95 ~g~~~~l~~i~~~k~~~~~~pvIaSi~~---~~s~~~~~~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPDRILIASIME---EYNKDAWEEIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred cCHHHHHHHHHHHHhhCCCCcEEEEccC---CCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 4678899888888877777776666552 268999999999999998998888777765
No 365
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=29.79 E-value=2.4e+02 Score=28.21 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcC-CCCCHHHHHHHHHHHHHcCCCeEEEEe
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGF-CGETEEEHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~-PgET~ed~~~tl~~l~~l~~d~~~i~~ 447 (524)
+.+.+.+.++.+++.. ++. +++.+ |+.+.++..+.++.+.+.+.|.+.+..
T Consensus 146 ~~~~~~eiv~~vr~~~-~~p----v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 146 DPEAVANLLKAVKAAV-DIP----LLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred CHHHHHHHHHHHHHcc-CCC----EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 5677788888888763 222 33333 456888999999999999999887753
No 366
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=29.56 E-value=4.4e+02 Score=24.06 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
..-.+.+...|...||+... .+ ...+|+|+++...... ......+.++. ..
T Consensus 10 ~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~-~g~~~~~~i~~------------------~~ 70 (219)
T PRK10336 10 MLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGM-DGRDILREWRE------------------KG 70 (219)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCCCCC-CHHHHHHHHHh------------------cC
Confidence 34456677777777876421 11 1468999996543222 22223333321 13
Q ss_pred CCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 160 HPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 160 p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
|..+|++...+... .....++ ....|++..+.....+...+..+
T Consensus 71 ~~~~ii~lt~~~~~~~~~~~~~-~ga~~~i~kp~~~~~l~~~i~~~ 115 (219)
T PRK10336 71 QREPVLILTARDALAERVEGLR-LGADDYLCKPFALIEVAARLEAL 115 (219)
T ss_pred CCCcEEEEECCCCHHHHHHHHh-CCCCeEEECCCCHHHHHHHHHHH
Confidence 44555544333322 2223333 34567888876665555555544
No 367
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=29.37 E-value=3.8e+02 Score=26.65 Aligned_cols=14 Identities=7% Similarity=0.245 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHh
Q 041524 393 REAYLDLVQKIRQI 406 (524)
Q Consensus 393 ~e~~~~~v~~ir~~ 406 (524)
.++..+..+.+.+.
T Consensus 78 ~~~~i~~a~~a~~~ 91 (281)
T cd00408 78 TREAIELARHAEEA 91 (281)
T ss_pred HHHHHHHHHHHHHc
Confidence 34555555555555
No 368
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=29.04 E-value=2.7e+02 Score=26.70 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHCCCeeccCCC---------------CCCcEEEEeeccCcchHHHH
Q 041524 89 NVNDMEIVLSIMKNAGYSEVINVP---------------ENAEVIFINTCAIRDYAEHK 132 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~~~~---------------~~aDvv~intc~v~~~a~~~ 132 (524)
|++-+..+.+.|++.|..+ +.+. .+-.+|.|+|-......+.+
T Consensus 95 n~yR~r~~g~~~q~~Gi~V-IP~v~W~~~~s~~~~~~gi~~~~ivaist~g~~~~~~~~ 152 (200)
T PF14386_consen 95 NIYRSRWLGAYWQSNGIKV-IPNVSWSDKRSFDFCFDGIPKGSIVAISTNGCINNKEDK 152 (200)
T ss_pred HHHHHHHHHHHHHHCCCeE-cceEEecCcchHHHHHhhcccCCEEEEEEecccCCHHHH
Confidence 8999999999999999875 4331 46678899888866655543
No 369
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=29.01 E-value=3.8e+02 Score=26.82 Aligned_cols=79 Identities=9% Similarity=0.067 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceE
Q 041524 264 PVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMR 343 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 343 (524)
+++.+++-++.+.+.|+..|.+.| .++.. .+..+.++++.+.+..+...
T Consensus 149 ~~~~~~~~~~~~~~~g~~~i~l~D-T~G~~------------------------------~P~~v~~lv~~l~~~~~~~~ 197 (273)
T cd07941 149 NPEYALATLKAAAEAGADWLVLCD-TNGGT------------------------------LPHEIAEIVKEVRERLPGVP 197 (273)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEec-CCCCC------------------------------CHHHHHHHHHHHHHhCCCCe
Confidence 688888888999888999988765 43322 13568888888887766555
Q ss_pred EEEecCCC--CCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 344 FRYTSPHP--KDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 344 ir~~s~~p--~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
+.+. .|- ..-....+..+. + |+.+++-.+-
T Consensus 198 l~~H-~Hnd~Gla~An~laA~~-a--Ga~~id~s~~ 229 (273)
T cd07941 198 LGIH-AHNDSGLAVANSLAAVE-A--GATQVQGTIN 229 (273)
T ss_pred eEEE-ecCCCCcHHHHHHHHHH-c--CCCEEEEecc
Confidence 6554 232 112344555554 4 9999986543
No 370
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=28.91 E-value=1.1e+02 Score=28.82 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=27.4
Q ss_pred EEEEecCCCCCHHHHHHHHH-----HHHHCCCeeccCCCCCCcEEEEeeccCcch
Q 041524 79 IYQETYGCQMNVNDMEIVLS-----IMKNAGYSEVINVPENAEVIFINTCAIRDY 128 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~-----~L~~~Gy~~~~~~~~~aDvv~intc~v~~~ 128 (524)
+|..+||..= =|.|.++. -+.+.|+......+.+||++++. -+++.+
T Consensus 37 lw~~~~~~~C--C~iE~~a~~~~~yDleRfGi~~~~~sPR~ADillVe-G~VT~~ 88 (181)
T PRK14817 37 LFTYPFVTAC--CGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVV-GTVNCK 88 (181)
T ss_pred ccccccccch--HHHHHHHhcCccccHHHhceeeccCCCcceeEEEEE-ecCCcc
Confidence 5555554321 67777654 23444554323678999999994 455543
No 371
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.85 E-value=4.6e+02 Score=25.71 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCC
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGY 440 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~ 440 (524)
+.+.++.+.+.+. |+.+...-+-.+.+.-..+..+++++++.++-
T Consensus 129 ~~l~~l~~~a~~~--gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~~ 173 (275)
T PRK09856 129 ENLSELCEYAENI--GMDLILEPLTPYESNVVCNANDVLHALALVPS 173 (275)
T ss_pred HHHHHHHHHHHHc--CCEEEEecCCCCcccccCCHHHHHHHHHHcCC
Confidence 4556666666666 87776554421111112234456666666653
No 372
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=28.78 E-value=3.7e+02 Score=26.32 Aligned_cols=74 Identities=19% Similarity=0.100 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHH
Q 041524 326 LRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQ 405 (524)
Q Consensus 326 ~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~ 405 (524)
..+..|...+.-..+..||=+... ...++++.++|++. |..+.|++...-++- -....| ...+--.+++.+|+
T Consensus 17 ~~LtRLa~TL~lVp~l~WIVVEd~--~~~t~~va~lL~~s--gl~y~HL~~~~~~~~-~~~~~r--g~~qRn~AL~~ir~ 89 (223)
T cd00218 17 AELTRLAHTLRLVPPLHWIVVEDS--EEKTPLVAELLRRS--GLMYTHLNAKTPSDP-TWLKPR--GVEQRNLALRWIRE 89 (223)
T ss_pred HHHHHHHHHHhcCCceEEEEEeCC--CCCCHHHHHHHHHc--CCceEEeccCCCCCc-ccCCcc--cHHHHHHHHHHHHh
Confidence 445666666666666667755532 24789999999999 999999998655311 112222 35666788888888
Q ss_pred h
Q 041524 406 I 406 (524)
Q Consensus 406 ~ 406 (524)
.
T Consensus 90 ~ 90 (223)
T cd00218 90 H 90 (223)
T ss_pred c
Confidence 6
No 373
>PRK08005 epimerase; Validated
Probab=28.67 E-value=2.1e+02 Score=27.74 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhCCceEEEEecCC----C-CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHH
Q 041524 327 RFADLLDRLSLEFPEMRFRYTSPH----P-KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQ 401 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~~~ir~~s~~----p-~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~ 401 (524)
++.+-++++.+. +.-++.+.-.. | -.+.++.++.+++...----+|+=++ ..+.| ++
T Consensus 14 ~l~~el~~l~~~-g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~--------------~P~~~---i~ 75 (210)
T PRK08005 14 RYAEALTALHDA-PLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVS--------------SPQRW---LP 75 (210)
T ss_pred HHHHHHHHHHHC-CCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccC--------------CHHHH---HH
Confidence 455555555443 22355554322 2 24567778888764222233555444 24444 44
Q ss_pred HHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 402 KIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 402 ~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
.+.++ |. |. +-+.-|+.++..++++.+++.+.. +. ...-|+||..
T Consensus 76 ~~~~~--ga----d~-It~H~Ea~~~~~~~l~~Ik~~G~k-~G---lAlnP~Tp~~ 120 (210)
T PRK08005 76 WLAAI--RP----GW-IFIHAESVQNPSEILADIRAIGAK-AG---LALNPATPLL 120 (210)
T ss_pred HHHHh--CC----CE-EEEcccCccCHHHHHHHHHHcCCc-EE---EEECCCCCHH
Confidence 55556 43 22 234457667788999999999875 22 3556788875
No 374
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.33 E-value=4.2e+02 Score=25.86 Aligned_cols=133 Identities=11% Similarity=-0.008 Sum_probs=71.6
Q ss_pred HHHHHHHHH-CCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEe
Q 041524 269 VKEVDELWK-EGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYT 347 (524)
Q Consensus 269 v~Ei~~l~~-~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~ 347 (524)
++-++.+.+ .|+++++++|-+-... | ...-.++++++.+.. .+.+.+.
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~------------~------------------~~~n~~~I~~i~~~~-~~pi~vG 82 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAKA------------Q------------------HAREFDYIKSLRRLT-TKDIEVG 82 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECccccc------------C------------------CcchHHHHHHHHhhc-CCeEEEc
Confidence 344555666 5999999998653321 1 123456666666532 2334333
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcceeecCcCCc-CHHHHhhhCCCCCHHHHHHHHHHHHHhCC-CcEEEEeEEEc---CCC
Q 041524 348 SPHPKDFPDELLYIMRDRPNVCKYIHLPAQTG-NSAVLERMRRGYTREAYLDLVQKIRQIIP-DVGLSSDFICG---FCG 422 (524)
Q Consensus 348 s~~p~~~~~elL~~l~~~~~G~~~i~igiESg-s~~vL~~m~R~~t~e~~~~~v~~ir~~~p-gi~i~~~fI~G---~Pg 422 (524)
...-+.|-++.+-++ |+.++.+|-++. +++.++ .+.+.+| .+.++.|.--| ..|
T Consensus 83 ---GGIrs~e~v~~~l~~--Ga~kvvigt~a~~~~~~l~----------------~~~~~fg~~ivvslD~~~g~v~~~g 141 (234)
T PRK13587 83 ---GGIRTKSQIMDYFAA--GINYCIVGTKGIQDTDWLK----------------EMAHTFPGRIYLSVDAYGEDIKVNG 141 (234)
T ss_pred ---CCcCCHHHHHHHHHC--CCCEEEECchHhcCHHHHH----------------HHHHHcCCCEEEEEEeeCCEEEecC
Confidence 122355666666677 999999997765 333333 3333333 35566776434 233
Q ss_pred C---CHHHHHHHHHHHHHcCCCeEEEEeeecCCCC
Q 041524 423 E---TEEEHADTLTLMKAVGYDMAYMFAYSMRERT 454 (524)
Q Consensus 423 E---T~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT 454 (524)
. +.-+..+.++.+.++++..+-+. -.-+.||
T Consensus 142 w~~~~~~~~~~~~~~~~~~g~~~ii~t-di~~dGt 175 (234)
T PRK13587 142 WEEDTELNLFSFVRQLSDIPLGGIIYT-DIAKDGK 175 (234)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEEe-cccCcCC
Confidence 2 33334555556666666544322 2334555
No 375
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.26 E-value=5.7e+02 Score=24.99 Aligned_cols=83 Identities=5% Similarity=-0.027 Sum_probs=45.1
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE--EcC------CC----
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI--CGF------CG---- 422 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI--~G~------Pg---- 422 (524)
-++.++.+++. |...|.+...... ......+.+...++-+.+.+. |+.+.+..- .++ +.
T Consensus 15 l~~~l~~~~~~--G~~~vEl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~--gl~v~s~~~~~~~~~~~~~~~~~~~r 85 (275)
T PRK09856 15 IEHAFRDASEL--GYDGIEIWGGRPH-----AFAPDLKAGGIKQIKALAQTY--QMPIIGYTPETNGYPYNMMLGDEHMR 85 (275)
T ss_pred HHHHHHHHHHc--CCCEEEEccCCcc-----ccccccCchHHHHHHHHHHHc--CCeEEEecCcccCcCccccCCCHHHH
Confidence 46788888888 8888887432110 011112334555555666677 877654210 011 11
Q ss_pred -CCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 423 -ETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 423 -ET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
+..+.+.+.+++...++...+.+.
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~~ 110 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLIS 110 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 122355566677778888876554
No 376
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.15 E-value=5.6e+02 Score=24.85 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=62.6
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE 341 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 341 (524)
..+++.+.+-++.+.+.|++.|.+.|- ++.. .+..+.++++.+.+..+.
T Consensus 142 ~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~------------------------------~P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 142 KTDPEYVLEVAKALEEAGADEISLKDT-VGLA------------------------------TPEEVAELVKALREALPD 190 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEechh-cCCc------------------------------CHHHHHHHHHHHHHhCCC
Confidence 457888888888888899999998763 2211 135688888888887665
Q ss_pred eEEEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHh
Q 041524 342 MRFRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQI 406 (524)
Q Consensus 342 ~~ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~ 406 (524)
..+.+..-+ ...-....+..+. + |+.+|+-.+- -|+++..--....++..++..
T Consensus 191 ~~~~~H~Hn~~gla~an~laA~~-a--G~~~id~s~~--------G~G~~~Gn~~~e~~~~~l~~~ 245 (265)
T cd03174 191 VPLGLHTHNTLGLAVANSLAALE-A--GADRVDGSVN--------GLGERAGNAATEDLVAALEGL 245 (265)
T ss_pred CeEEEEeCCCCChHHHHHHHHHH-c--CCCEEEeccc--------cccccccCccHHHHHHHHHhc
Confidence 565554211 1222344556664 4 9999886544 344443333444444445554
No 377
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.13 E-value=5.8e+02 Score=24.95 Aligned_cols=137 Identities=15% Similarity=0.071 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEE
Q 041524 267 SIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRY 346 (524)
Q Consensus 267 ~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~ 346 (524)
+-++-++.+.++|+++++++|-+-. . |. +. -.++++++.+... ..+.+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~------------~~-----------------~~-n~~~i~~i~~~~~-~~v~v 78 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-E------------GV-----------------GN-NEMYIKEISKIGF-DWIQV 78 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-C------------CC-----------------cc-hHHHHHHHHhhCC-CCEEE
Confidence 4566667777889999999986522 1 11 11 2377777766311 12333
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE----EcCCC
Q 041524 347 TSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI----CGFCG 422 (524)
Q Consensus 347 ~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI----~G~Pg 422 (524)
. -..-+.+-++.+-+. |+.++.+|-++.. +.+-+.++.+..-.. .+.++.|+- +..-|
T Consensus 79 G---GGIrs~e~~~~~l~~--Ga~kvvigt~a~~-----------~p~~~~~~~~~~g~~--~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 79 G---GGIRDIEKAKRLLSL--DVNALVFSTIVFT-----------NFNLFHDIVREIGSN--RVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred e---CCcCCHHHHHHHHHC--CCCEEEECchhhC-----------CHHHHHHHHHHhCCC--CEEEEEEcCCCCEEEccC
Confidence 2 112244556666667 9999999877643 222233333322111 355666661 11112
Q ss_pred --CCHHHHHHHHHHHHHcCCCeEEEEeeecCCCC
Q 041524 423 --ETEEEHADTLTLMKAVGYDMAYMFAYSMRERT 454 (524)
Q Consensus 423 --ET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT 454 (524)
++.-++.+.++.+.+.+...+-+ .-.-+.||
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~-tdI~~dGt 173 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIF-TYISNEGT 173 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEE-eccccccc
Confidence 34446667777777777765433 22345565
No 378
>PRK14057 epimerase; Provisional
Probab=27.88 E-value=2.3e+02 Score=28.36 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEE-----EEeeecCCCChhcc
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAY-----MFAYSMRERTHAHR 458 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~-----i~~~sp~pGT~~~~ 458 (524)
.+.++.+.++ |. |+|. +.-|+..++.++++.+++.+....+ -.-...-|+||+..
T Consensus 88 ~~~i~~~~~a--Ga----d~It-~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~ 147 (254)
T PRK14057 88 WTAAQACVKA--GA----HCIT-LQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDV 147 (254)
T ss_pred HHHHHHHHHh--CC----CEEE-EeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHH
Confidence 3344555566 43 3333 3356557788999999999763111 12345678888853
No 379
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=27.87 E-value=4.5e+02 Score=29.87 Aligned_cols=94 Identities=11% Similarity=0.126 Sum_probs=51.2
Q ss_pred CccEEEEecCCCCC-HHHHHHHHHHHHHCCCeeccCCC-------------CCCcEEEEeeccCcchHHHHHHHHHHHHH
Q 041524 76 QGRIYQETYGCQMN-VNDMEIVLSIMKNAGYSEVINVP-------------ENAEVIFINTCAIRDYAEHKVWQRLNYFW 141 (524)
Q Consensus 76 ~~~~~~~t~GC~~N-~~d~e~i~~~L~~~Gy~~~~~~~-------------~~aDvv~intc~v~~~a~~~~~~~l~~~~ 141 (524)
+.+|++.++|=--. ..-+.-....|...||+.+.... ..|+|++| |+-...-....-...+.+
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~sga~i~vi--CssD~~Y~~~a~~~~~al- 570 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKAGAQVAVL--CSSDKVYAQQGLEVAKAL- 570 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhcCCCEEEE--eCCCcchHHHHHHHHHHH-
Confidence 34699999992111 22244556678888998632221 47899999 664443333333333332
Q ss_pred HhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcce-EEECC
Q 041524 142 FLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVD-VVCGP 191 (524)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD-~Vv~g 191 (524)
| ...+ .+|++.|.-+. .+++.+ .++| +|..|
T Consensus 571 --~------------~ag~-~~v~lAG~p~~--~~~~~~--aGvd~fi~~g 602 (619)
T TIGR00642 571 --K------------AAGA-KALYLAGAFKE--FGDDAA--EAIDGRLFMK 602 (619)
T ss_pred --H------------hCCC-CEEEEeCCCcc--hhhHHh--cCCcceeEcC
Confidence 1 1122 37888887665 334433 3565 44443
No 380
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.77 E-value=5.6e+02 Score=24.72 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=56.5
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..+.++.+.-++.|.+.|++-+.++=.+ ....+.++++.+..
T Consensus 19 ir~~~~~~a~~~~~al~~~Gi~~iEit~~~------------------------------------~~a~~~i~~l~~~~ 62 (213)
T PRK06552 19 VRGESKEEALKISLAVIKGGIKAIEVTYTN------------------------------------PFASEVIKELVELY 62 (213)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCC------------------------------------ccHHHHHHHHHHHc
Confidence 366789999999999999999987765321 12455666666554
Q ss_pred C---ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 340 P---EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 340 ~---~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
+ .+-+...+ .++.+.++...++ |..++.-| ..++++++..++
T Consensus 63 ~~~p~~~vGaGT----V~~~~~~~~a~~a--GA~FivsP--~~~~~v~~~~~~ 107 (213)
T PRK06552 63 KDDPEVLIGAGT----VLDAVTARLAILA--GAQFIVSP--SFNRETAKICNL 107 (213)
T ss_pred CCCCCeEEeeee----CCCHHHHHHHHHc--CCCEEECC--CCCHHHHHHHHH
Confidence 2 34554443 2566777777777 77776644 567777776544
No 381
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=27.24 E-value=2.8e+02 Score=29.76 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=73.0
Q ss_pred HHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecC
Q 041524 270 KEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP 349 (524)
Q Consensus 270 ~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~ 349 (524)
..++.|.+.|++-|.|-..+ |. .....+.++.+.+..|+..+ +
T Consensus 254 ~rl~ll~~aGvdvviLDSSq----------------Gn-----------------S~~qiemik~iK~~yP~l~V----i 296 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQ----------------GN-----------------SIYQLEMIKYIKETYPDLQI----I 296 (503)
T ss_pred HHHHHhhhcCCcEEEEecCC----------------Cc-----------------chhHHHHHHHHHhhCCCcee----e
Confidence 45667778899887764322 21 12467888888888887665 2
Q ss_pred CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh-hh--CCCCCHHHHHHHHHHHHHhCCCcEEEEe
Q 041524 350 HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE-RM--RRGYTREAYLDLVQKIRQIIPDVGLSSD 415 (524)
Q Consensus 350 ~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~-~m--~R~~t~e~~~~~v~~ir~~~pgi~i~~~ 415 (524)
....++.+..+.|-.+ |...+.+|+-|||--+-+ .| +|+. .-++.+..+.+++. |+.+.+|
T Consensus 297 aGNVVT~~qa~nLI~a--GaDgLrVGMGsGSiCiTqevma~GrpQ-~TAVy~va~~A~q~--gvpviAD 360 (503)
T KOG2550|consen 297 AGNVVTKEQAANLIAA--GADGLRVGMGSGSICITQKVMACGRPQ-GTAVYKVAEFANQF--GVPCIAD 360 (503)
T ss_pred ccceeeHHHHHHHHHc--cCceeEeccccCceeeeceeeeccCCc-ccchhhHHHHHHhc--CCceeec
Confidence 3345678888888888 999999999999976644 33 5543 34677777888887 8777766
No 382
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=27.19 E-value=1.7e+02 Score=29.14 Aligned_cols=95 Identities=9% Similarity=0.064 Sum_probs=51.9
Q ss_pred EEecCCCC-CHHHHHHHHHHHHHCCCeeccC--C--------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhh
Q 041524 81 QETYGCQM-NVNDMEIVLSIMKNAGYSEVIN--V--------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKK 149 (524)
Q Consensus 81 ~~t~GC~~-N~~d~e~i~~~L~~~Gy~~~~~--~--------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~ 149 (524)
.+++.|.. ...+.+.+....++.|-+..++ + ...||+|++|.-........ .+...++ .+
T Consensus 136 ~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d--~~~~~~l---~~---- 206 (260)
T PRK00278 136 AILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVD--LETTERL---AP---- 206 (260)
T ss_pred EEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCC--HHHHHHH---HH----
Confidence 44455544 5567888888888889874322 1 13789999986433221100 2222222 11
Q ss_pred cccccccccCCC--CEEEEEcccccccHHHHHhhCCcceEEECCCCc
Q 041524 150 NVATGRSQSKHP--PKIVVLGCMAERLKDKILDADKMVDVVCGPDAY 194 (524)
Q Consensus 150 ~~~~~~~~~~p~--~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege 194 (524)
..|+ ..|..||......-..+++ -++|.|+.|.+-
T Consensus 207 --------~~p~~~~vIaegGI~t~ed~~~~~~--~Gad~vlVGsaI 243 (260)
T PRK00278 207 --------LIPSDRLVVSESGIFTPEDLKRLAK--AGADAVLVGESL 243 (260)
T ss_pred --------hCCCCCEEEEEeCCCCHHHHHHHHH--cCCCEEEECHHH
Confidence 1232 3455677754333344443 368999998763
No 383
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=27.16 E-value=6.9e+02 Score=25.55 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecC
Q 041524 328 FADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLP 375 (524)
Q Consensus 328 ~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~ig 375 (524)
+.++++.+........+.++ .-...+++.|++. |+..+++.
T Consensus 222 ~k~i~~~i~~~g~~~ilH~C-----G~~~~~~~~l~~~--g~d~ls~d 262 (340)
T TIGR01463 222 QKRLFAYIKEIGGITVLHIC-----GFTQPILRDIANN--GCFGFSVD 262 (340)
T ss_pred HHHHHHHHHhcCCceEEEEC-----CCchhhHHHHHHh--CCCEEeec
Confidence 45566666543222233332 2245678889888 88777643
No 384
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=27.13 E-value=6.6e+02 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=22.2
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSY 293 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y 293 (524)
++.|.-++..+..|.+.|++..+.. +++.|
T Consensus 55 TKnp~P~l~~L~~l~~~gy~~yfq~--Tit~Y 84 (266)
T PF08902_consen 55 TKNPAPFLPYLDELDERGYPYYFQF--TITGY 84 (266)
T ss_pred cCCcHHHHhhHHHHHhCCCceEEEE--EeCCC
Confidence 5666778888899988898865544 46677
No 385
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=27.07 E-value=7.1e+02 Score=25.67 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhCCce-EEEEecCCCCCCCHHHHHHHHcCCCCcceeecC
Q 041524 328 FADLLDRLSLEFPEM-RFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLP 375 (524)
Q Consensus 328 ~~~Ll~~l~~~~~~~-~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~ig 375 (524)
+.++++.+.+..+.. -+.++ . -....++.|++. |.+.+++.
T Consensus 226 ~k~i~~~i~~~~~~~~ilh~c----g-~~~~~~~~~~~~--~~~~is~d 267 (346)
T PRK00115 226 MKRIVAELKREHPDVPVILFG----K-GAGELLEAMAET--GADVVGLD 267 (346)
T ss_pred HHHHHHHHHHhCCCCCEEEEc----C-CcHHHHHHHHhc--CCCEEeeC
Confidence 456666666543222 22222 1 234578889988 88877775
No 386
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=27.07 E-value=2.7e+02 Score=25.97 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCc
Q 041524 326 LRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPA 376 (524)
Q Consensus 326 ~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igi 376 (524)
..+.++++.+....+...+.++ ..++.+-+..+++. |...+++|.
T Consensus 112 ~~~~~~v~~l~~~~~~v~ie~S----GGI~~~ni~~ya~~--gvD~isvg~ 156 (169)
T PF01729_consen 112 EDLKEAVEELRELNPRVKIEAS----GGITLENIAEYAKT--GVDVISVGS 156 (169)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEE----SSSSTTTHHHHHHT--T-SEEEECH
T ss_pred HHHHHHHHHHhhcCCcEEEEEE----CCCCHHHHHHHHhc--CCCEEEcCh
Confidence 3577777777777776666555 45778888899998 999999885
No 387
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.00 E-value=7.7e+02 Score=27.20 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=66.2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+...+++..+.++.|++.|+.-|.+. + +. |. .....+.++.+.+..+
T Consensus 236 ~av~~~~~~~ra~~Lv~aGvd~i~vd--~--a~------------g~-----------------~~~~~~~i~~ir~~~~ 282 (502)
T PRK07107 236 AGINTRDYAERVPALVEAGADVLCID--S--SE------------GY-----------------SEWQKRTLDWIREKYG 282 (502)
T ss_pred eccChhhHHHHHHHHHHhCCCeEeec--C--cc------------cc-----------------cHHHHHHHHHHHHhCC
Confidence 44555677888899999998887653 2 22 21 1235677778877665
Q ss_pred c-eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh-hhCCCC-CHHHHHHHHHHHH
Q 041524 341 E-MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE-RMRRGY-TREAYLDLVQKIR 404 (524)
Q Consensus 341 ~-~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~-~m~R~~-t~e~~~~~v~~ir 404 (524)
. ..+-.. ...+.+-.+.+.++ |+..|.+|+-+||--+-+ .++=+. ....+.+..+.++
T Consensus 283 ~~~~V~aG----nV~t~e~a~~li~a--GAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~ 343 (502)
T PRK07107 283 DSVKVGAG----NVVDREGFRYLAEA--GADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARD 343 (502)
T ss_pred CCceEEec----cccCHHHHHHHHHc--CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHH
Confidence 3 344332 23567777777778 999999999999776655 333333 3445555555443
No 388
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.97 E-value=5.8e+02 Score=24.59 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=78.7
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEE--EeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTL--LGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l--~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
-+-+..++.+|...+.+.|...+.+ .|..|-.+ +.+ +.-..+-|+.-...
T Consensus 12 L~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpN---------------iT~-------------G~pvV~slR~~~~~ 63 (224)
T KOG3111|consen 12 LSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPN---------------ITF-------------GPPVVESLRKHTGA 63 (224)
T ss_pred hccchHHHHHHHHHHHHcCCCeEEEeeecccccCC---------------ccc-------------chHHHHHHHhccCC
Confidence 4556788999999999999987664 45444322 000 11233322222111
Q ss_pred CCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 339 FPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 339 ~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
.+-+.....-.+ +++.++-|+++ |...+.+=.|.. ++..++++.+|+. |+.+..-+=
T Consensus 64 ~~ffD~HmMV~~----Peq~V~~~a~a--gas~~tfH~E~~--------------q~~~~lv~~ir~~--Gmk~G~alk- 120 (224)
T KOG3111|consen 64 DPFFDVHMMVEN----PEQWVDQMAKA--GASLFTFHYEAT--------------QKPAELVEKIREK--GMKVGLALK- 120 (224)
T ss_pred CcceeEEEeecC----HHHHHHHHHhc--CcceEEEEEeec--------------cCHHHHHHHHHHc--CCeeeEEeC-
Confidence 222333332223 47789999998 888877766642 2367788888998 876554433
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCC
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERT 454 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT 454 (524)
||-..|+++..++ .+|.+- ..+..||-
T Consensus 121 --PgT~Ve~~~~~~~-----~~D~vL--vMtVePGF 147 (224)
T KOG3111|consen 121 --PGTPVEDLEPLAE-----HVDMVL--VMTVEPGF 147 (224)
T ss_pred --CCCcHHHHHHhhc-----cccEEE--EEEecCCC
Confidence 7767777655443 345443 45667764
No 389
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=26.87 E-value=4.4e+02 Score=25.77 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHCCCcEEEEEec
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQ 288 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~ 288 (524)
++..+.++.+.+.|...|+|.-+
T Consensus 71 ~~p~~~i~~fa~agad~It~H~E 93 (220)
T COG0036 71 ENPDRYIEAFAKAGADIITFHAE 93 (220)
T ss_pred CCHHHHHHHHHHhCCCEEEEEec
Confidence 33455667777889998888765
No 390
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.67 E-value=2.3e+02 Score=28.44 Aligned_cols=88 Identities=11% Similarity=0.191 Sum_probs=56.6
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCH---------HHHhhhCCCCCHHHHHHHHHHHHHhCCCcE--EEEeE--EE--c
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNS---------AVLERMRRGYTREAYLDLVQKIRQIIPDVG--LSSDF--IC--G 419 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~---------~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~--i~~~f--I~--G 419 (524)
+.+++..|.+. |+..|.||+-..+| ...+.+..|.+.+++.+.++.+|+. +.+. +.+++ |+ |
T Consensus 31 ~~~~~~~l~~~--Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 31 TKKALKILDKK--GADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHHhC
Confidence 35566666666 88888888764442 2344456678888888888888864 2332 22211 11 1
Q ss_pred -----------------CCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 420 -----------------FCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 420 -----------------~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+|.+..|+..+.++.+++.+++.+.+
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILL 150 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 46666777888888888888876554
No 391
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.66 E-value=7.1e+02 Score=25.53 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=57.7
Q ss_pred HHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCC-CCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhC
Q 041524 329 ADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRP-NVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQII 407 (524)
Q Consensus 329 ~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~-~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~ 407 (524)
.++++.+.+.....++.+.+.|+..++++.++.++... .| +.+..|+. +++-+ +.+.+.+.++++.+.+.
T Consensus 187 ~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~G---i~v~~q~v---Ll~gv--Nd~~~~l~~l~~~l~~~- 257 (321)
T TIGR03822 187 PALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAG---IPMVSQSV---LLRGV--NDDPETLAALMRAFVEC- 257 (321)
T ss_pred HHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcC---CEEEEEee---EeCCC--CCCHHHHHHHHHHHHhc-
Confidence 35556665543235676777788777877777766531 14 33333331 11111 34678889999999988
Q ss_pred CCcEE-EEeEEEcCCC-----CCHHHHHHHHHHHHHc
Q 041524 408 PDVGL-SSDFICGFCG-----ETEEEHADTLTLMKAV 438 (524)
Q Consensus 408 pgi~i-~~~fI~G~Pg-----ET~ed~~~tl~~l~~l 438 (524)
|+.. ....+.-.|| -+.++..+.++.+...
T Consensus 258 -gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~ 293 (321)
T TIGR03822 258 -RIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGR 293 (321)
T ss_pred -CCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHh
Confidence 8753 3444444444 2455666666666553
No 392
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=26.62 E-value=5.3e+02 Score=25.26 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=59.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHCCCee-ccCCC-----------CCCcEEEEeeccCcch---HHHHHHHHHHHHHHh
Q 041524 79 IYQETYGCQMNVNDMEIVLSIMKNAGYSE-VINVP-----------ENAEVIFINTCAIRDY---AEHKVWQRLNYFWFL 143 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~-~~~~~-----------~~aDvv~intc~v~~~---a~~~~~~~l~~~~~~ 143 (524)
+.|+.=.|. .+...+...+++.|... ++-+| ...|.|++.|--.-.. -...+.+.+++++.+
T Consensus 86 it~H~Ea~~---~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~ 162 (229)
T PRK09722 86 ITLHPETIN---GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKAL 162 (229)
T ss_pred EEECccCCc---chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHH
Confidence 444444443 24566778888999752 12222 4899999965433221 122355566666444
Q ss_pred hhhhhhcccccccccCCCCEEEE-EcccccccHHHHHhhCCcceEEECCCC-----cccHHHHHHHH
Q 041524 144 KREWKKNVATGRSQSKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDA-----YRDLPRLLEEV 204 (524)
Q Consensus 144 ~~~~~~~~~~~~~~~~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~geg-----e~~l~~Ll~~~ 204 (524)
.. ++..+..|-| ||.-.+. -.++.+ .++|++|.|-+ ..+..+.++.+
T Consensus 163 ~~-----------~~~~~~~IeVDGGI~~~~-i~~~~~--aGad~~V~Gss~iF~~~~d~~~~i~~l 215 (229)
T PRK09722 163 RE-----------RNGLEYLIEVDGSCNQKT-YEKLME--AGADVFIVGTSGLFNLDEDIDEAWDIM 215 (229)
T ss_pred HH-----------hcCCCeEEEEECCCCHHH-HHHHHH--cCCCEEEEChHHHcCCCCCHHHHHHHH
Confidence 32 2234566777 4554443 344443 47999887732 23455555544
No 393
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=26.31 E-value=8.8e+02 Score=26.51 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=73.8
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.|-| ..+.. .+....+|+.++.+..+ .
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~D-t~G~l------------------------------~P~~v~~Lv~~lk~~~~-v 197 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKD-MAGLL------------------------------TPKRAYELVKALKKKFG-V 197 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC-ccCCc------------------------------CHHHHHHHHHHHHHhcC-C
Confidence 3688899999999999999998876 32221 13568888888887654 4
Q ss_pred EEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCC
Q 041524 343 RFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFC 421 (524)
Q Consensus 343 ~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~P 421 (524)
.+.+.+-+-..+ ....+..+. + |+..|+..+-. |..+.+--...+++..++.. |+. .|
T Consensus 198 pI~~H~Hnt~GlA~AN~laAie-a--Gad~vD~sv~~--------~g~gagN~atE~lv~~L~~~--g~~------tg-- 256 (467)
T PRK14041 198 PVEVHSHCTTGLASLAYLAAVE-A--GADMFDTAISP--------FSMGTSQPPFESMYYAFREN--GKE------TD-- 256 (467)
T ss_pred ceEEEecCCCCcHHHHHHHHHH-h--CCCEEEeeccc--------cCCCCCChhHHHHHHHHHhc--CCC------CC--
Confidence 555542111111 233444443 4 99999987774 44454444555555555544 432 12
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 041524 422 GETEEEHADTLTLMKAVG 439 (524)
Q Consensus 422 gET~ed~~~tl~~l~~l~ 439 (524)
=+.+.+.+..++++++.
T Consensus 257 -iDl~~L~~~~~~~~~vr 273 (467)
T PRK14041 257 -FDRKALKFLVEYFTKVR 273 (467)
T ss_pred -cCHHHHHHHHHHHHHHH
Confidence 24566666666666553
No 394
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=26.28 E-value=3.1e+02 Score=26.33 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=39.0
Q ss_pred eeecCcCCcCHHHHhhhCC-CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHH----HHHHHHHHHHc
Q 041524 371 YIHLPAQTGNSAVLERMRR-GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEE----HADTLTLMKAV 438 (524)
Q Consensus 371 ~i~igiESgs~~vL~~m~R-~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed----~~~tl~~l~~l 438 (524)
.++|-+++|. .|+| |.+.+++.+.++.+.+. |++.+.+-+..+-..++.+. ++.++++...+
T Consensus 118 ~v~lkvdtG~-----~~~R~G~~~~~~~~~~~~i~~~-~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l 184 (222)
T cd00635 118 DVLVQVNIGG-----EESKSGVAPEELEELLEEIAAL-PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDEL 184 (222)
T ss_pred cEEEEEecCC-----CCCCCCCCHHHHHHHHHHHHcC-CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHH
Confidence 4788888872 2577 78888888888888664 67766554444434455555 44444555444
No 395
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=26.10 E-value=4.8e+02 Score=26.14 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHh
Q 041524 393 REAYLDLVQKIRQI 406 (524)
Q Consensus 393 ~e~~~~~v~~ir~~ 406 (524)
.++.++.++.+.+.
T Consensus 82 ~~~~i~~a~~a~~~ 95 (292)
T PRK03170 82 TAEAIELTKFAEKA 95 (292)
T ss_pred HHHHHHHHHHHHHc
Confidence 45666666666666
No 396
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=25.86 E-value=3.4e+02 Score=26.11 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCcEEEEeeccCcchHHHHHH-HHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcce-EEECC
Q 041524 114 NAEVIFINTCAIRDYAEHKVW-QRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVD-VVCGP 191 (524)
Q Consensus 114 ~aDvv~intc~v~~~a~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD-~Vv~g 191 (524)
.+|||++.-......+- +.+ +.++. ..|+.+|++-..+... ....+....+++ |+...
T Consensus 52 ~~DvvllDi~~p~~~G~-~~~~~~i~~------------------~~p~~~vvvlt~~~~~-~~~~~~~~~Ga~G~l~K~ 111 (216)
T PRK10100 52 SGSIILLDMMEADKKLI-HYWQDTLSR------------------KNNNIKILLLNTPEDY-PYREIENWPHINGVFYAM 111 (216)
T ss_pred CCCEEEEECCCCCccHH-HHHHHHHHH------------------hCCCCcEEEEECCchh-HHHHHHHhcCCeEEEECC
Confidence 47999997655432222 222 33322 2477777776655553 223233223454 66666
Q ss_pred CCcccHHHHHHHHhcCCC
Q 041524 192 DAYRDLPRLLEEVDYGQK 209 (524)
Q Consensus 192 ege~~l~~Ll~~~~~g~~ 209 (524)
.....+.+.+..+..|..
T Consensus 112 ~~~~~L~~aI~~v~~G~~ 129 (216)
T PRK10100 112 EDQERVVNGLQGVLRGEC 129 (216)
T ss_pred CCHHHHHHHHHHHHcCCc
Confidence 555556666666666653
No 397
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=25.72 E-value=6.3e+02 Score=24.63 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEE
Q 041524 267 SIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRY 346 (524)
Q Consensus 267 ~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~ 346 (524)
+-++-++.+.++|+++++++|-+-. . |. + .-.++++++.+... ..+.+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~------------g~-----------------~-~n~~~i~~i~~~~~-~pv~v 80 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-F------------GR-----------------G-SNRELLAEVVGKLD-VKVEL 80 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-C------------CC-----------------C-ccHHHHHHHHHHcC-CCEEE
Confidence 5556667777889999999986521 1 11 1 12367777766431 23333
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeE---EEcCCCC
Q 041524 347 TSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDF---ICGFCGE 423 (524)
Q Consensus 347 ~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~f---I~G~PgE 423 (524)
. ...-+.|-++.+-.. ||..+.+|..... +.+-+.++++.+.+ .+.++.|+ -+=..|.
T Consensus 81 g---GGirs~edv~~~l~~--Ga~kvviGs~~l~-----------~p~l~~~i~~~~~~---~i~vsld~~~~~v~~~Gw 141 (241)
T PRK14024 81 S---GGIRDDESLEAALAT--GCARVNIGTAALE-----------NPEWCARVIAEHGD---RVAVGLDVRGHTLAARGW 141 (241)
T ss_pred c---CCCCCHHHHHHHHHC--CCCEEEECchHhC-----------CHHHHHHHHHHhhh---hEEEEEEEeccEeccCCe
Confidence 2 122356667777677 9999998876532 23334444444433 24444444 1111232
Q ss_pred --CHHHHHHHHHHHHHcCCCeEEEEe
Q 041524 424 --TEEEHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 424 --T~ed~~~tl~~l~~l~~d~~~i~~ 447 (524)
+..+..+.++.+.+.+.+.+-+..
T Consensus 142 ~~~~~~~~~~~~~l~~~G~~~iiv~~ 167 (241)
T PRK14024 142 TRDGGDLWEVLERLDSAGCSRYVVTD 167 (241)
T ss_pred eecCccHHHHHHHHHhcCCCEEEEEe
Confidence 334445556666677787665554
No 398
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.71 E-value=3.1e+02 Score=27.58 Aligned_cols=75 Identities=21% Similarity=0.139 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHcCCCCcc--eeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHh----CCCcEEEEeEEEcCCCCCHH
Q 041524 353 DFPDELLYIMRDRPNVCK--YIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQI----IPDVGLSSDFICGFCGETEE 426 (524)
Q Consensus 353 ~~~~elL~~l~~~~~G~~--~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~----~pgi~i~~~fI~G~PgET~e 426 (524)
.+++|-.+.|.++ |.. -+|+|+-.+-.--.+ +..|.++..+.++.+.++ .|++- -+..|=|=.|++
T Consensus 157 vf~~e~A~~M~~A--GaDiiv~H~GlT~gG~~Ga~---~~~sl~~a~~~~~~i~~aa~~v~~dii---~l~hGGPI~~p~ 228 (268)
T PF09370_consen 157 VFNEEQARAMAEA--GADIIVAHMGLTTGGSIGAK---TALSLEEAAERIQEIFDAARAVNPDII---VLCHGGPIATPE 228 (268)
T ss_dssp E-SHHHHHHHHHH--T-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT-E---EEEECTTB-SHH
T ss_pred ecCHHHHHHHHHc--CCCEEEecCCccCCCCcCcc---ccCCHHHHHHHHHHHHHHHHHhCCCeE---EEEeCCCCCCHH
Confidence 3689999999999 655 478988766544433 456888888888777775 24432 244577889999
Q ss_pred HHHHHHHHH
Q 041524 427 EHADTLTLM 435 (524)
Q Consensus 427 d~~~tl~~l 435 (524)
|.+..++-.
T Consensus 229 D~~~~l~~t 237 (268)
T PF09370_consen 229 DAQYVLRNT 237 (268)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHHhcC
Confidence 987765543
No 399
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.71 E-value=3.4e+02 Score=26.13 Aligned_cols=97 Identities=9% Similarity=0.047 Sum_probs=58.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHCCCee-ccCC-----------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhh
Q 041524 79 IYQETYGCQMNVNDMEIVLSIMKNAGYSE-VINV-----------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKRE 146 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~-~~~~-----------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~ 146 (524)
+.|+--.||. ...+...+++.|... .... .+..|+|+|.|--.-.+..+-+-+.+.+.+.++
T Consensus 91 ~tfH~E~~q~----~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR-- 164 (224)
T KOG3111|consen 91 FTFHYEATQK----PAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLR-- 164 (224)
T ss_pred EEEEEeeccC----HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHH--
Confidence 5566666666 666778888888753 1111 246799999665433333333334444444443
Q ss_pred hhhcccccccccCCCCEE-EEEcccccccHHHHHhhCCcceEEECCCCc
Q 041524 147 WKKNVATGRSQSKHPPKI-VVLGCMAERLKDKILDADKMVDVVCGPDAY 194 (524)
Q Consensus 147 ~~~~~~~~~~~~~p~~~I-vvgG~~at~~~e~~l~~~~~vD~Vv~gege 194 (524)
++.|+.-| |=||..++...... + .+++++|.|-+.
T Consensus 165 ----------~kyp~l~ievDGGv~~~ti~~~a-~--AGAN~iVaGsav 200 (224)
T KOG3111|consen 165 ----------EKYPNLDIEVDGGVGPSTIDKAA-E--AGANMIVAGSAV 200 (224)
T ss_pred ----------HhCCCceEEecCCcCcchHHHHH-H--cCCCEEEeccee
Confidence 23688888 66777766544333 2 478999888765
No 400
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=25.62 E-value=6.1e+02 Score=27.45 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEE
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR 345 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir 345 (524)
+.-.++++.|.+.|+.-|.+...+ |. ...+.+.++.+.+..+...+-
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~----------------g~-----------------~~~~~~~i~~i~~~~~~~~vi 269 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSH----------------GH-----------------SIYVIDSIKEIKKTYPDLDII 269 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCC----------------Cc-----------------HhHHHHHHHHHHHhCCCCCEE
Confidence 456788889999998877763211 11 134777888887765554443
Q ss_pred EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh-hCCCC-CHHHHHHHHHHHHHhCCCcEEEEeEEE--cCC
Q 041524 346 YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER-MRRGY-TREAYLDLVQKIRQIIPDVGLSSDFIC--GFC 421 (524)
Q Consensus 346 ~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~-m~R~~-t~e~~~~~v~~ir~~~pgi~i~~~fI~--G~P 421 (524)
.. ...+.+-.+.+.++ |+..|.+|+=+|+-..-+. .+-+. ....+.++.+.+++. ++. +|. |.
T Consensus 270 ~G----~v~t~~~a~~l~~a--Gad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~--~vp----viadGGi- 336 (450)
T TIGR01302 270 AG----NVATAEQAKALIDA--GADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQS--GIP----VIADGGI- 336 (450)
T ss_pred EE----eCCCHHHHHHHHHh--CCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhc--CCe----EEEeCCC-
Confidence 32 23577777778788 9999998886664332221 12222 345555566666665 655 455 44
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 422 GETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 422 gET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.|..|+.+.+. ++.+.+.+
T Consensus 337 -~~~~di~kAla----~GA~~V~~ 355 (450)
T TIGR01302 337 -RYSGDIVKALA----AGADAVML 355 (450)
T ss_pred -CCHHHHHHHHH----cCCCEEEE
Confidence 46777666544 36665544
No 401
>PLN02361 alpha-amylase
Probab=25.58 E-value=1.6e+02 Score=31.53 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcC
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGF 420 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~ 420 (524)
.|.+++.++|+.+++. ||.+..|+++..
T Consensus 73 Gt~~el~~li~~~h~~--gi~vi~D~V~NH 100 (401)
T PLN02361 73 GSEHLLKSLLRKMKQY--NVRAMADIVINH 100 (401)
T ss_pred CCHHHHHHHHHHHHHc--CCEEEEEEcccc
Confidence 3789999999999999 999999999865
No 402
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=25.57 E-value=6e+02 Score=25.03 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=73.2
Q ss_pred CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC----CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHH
Q 041524 354 FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG----YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHA 429 (524)
Q Consensus 354 ~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~----~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~ 429 (524)
.|.--.+++.++ |++-+.++ +-.+-..++.+ .+.+++.+.++.+.... .+.+..|+=-|| |.+.+.+.
T Consensus 17 ~D~~SAr~~e~~--Gf~ai~~s----g~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~-~iPv~vD~d~Gy-G~~~~~v~ 88 (238)
T PF13714_consen 17 WDALSARLAERA--GFDAIATS----GAGVAASLGYPDGGLLTLTEMLAAVRRIARAV-SIPVIVDADTGY-GNDPENVA 88 (238)
T ss_dssp SSHHHHHHHHHT--T-SEEEEH----HHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS-SSEEEEE-TTTS-SSSHHHHH
T ss_pred cCHHHHHHHHHc--CCCEEEec----hHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh-cCcEEEEccccc-CchhHHHH
Confidence 355556667777 88876653 33333344442 47899999999999875 789999999999 88999999
Q ss_pred HHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHHHHHHHHH
Q 041524 430 DTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRRLTELIEA 479 (524)
Q Consensus 430 ~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~Rl~~l~~~ 479 (524)
+|+..+.+.+..-+++--- +-|. . -+.-+|.+.-.+|++...+.
T Consensus 89 ~tv~~~~~aG~agi~IEDq--~~~~-~---~~~l~~~ee~~~kI~Aa~~a 132 (238)
T PF13714_consen 89 RTVRELERAGAAGINIEDQ--RCGH-G---GKQLVSPEEMVAKIRAAVDA 132 (238)
T ss_dssp HHHHHHHHCT-SEEEEESB--STTT-S---TT-B--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEeecc--ccCC-C---CCceeCHHHHHHHHHHHHHh
Confidence 9999999999998888665 2231 1 12334655555666555443
No 403
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=25.55 E-value=2.1e+02 Score=28.43 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCeec---cCC---------CCCCc-EEEE-eeccCcch---HHHHHHHHHHHHHHhhhhhhhcccc
Q 041524 91 NDMEIVLSIMKNAGYSEV---INV---------PENAE-VIFI-NTCAIRDY---AEHKVWQRLNYFWFLKREWKKNVAT 153 (524)
Q Consensus 91 ~d~e~i~~~L~~~Gy~~~---~~~---------~~~aD-vv~i-ntc~v~~~---a~~~~~~~l~~~~~~~~~~~~~~~~ 153 (524)
.+.+.+...++++|...+ ... .+.+| .|.+ ++.+++.. -...+.+.++++ |
T Consensus 127 ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~l---r--------- 194 (256)
T TIGR00262 127 EESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRL---K--------- 194 (256)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHH---H---------
Confidence 466777788888886531 111 13466 4444 44555543 223355666555 1
Q ss_pred cccccCCCCEEEEEcccccccHHHHHhhC-CcceEEECCC
Q 041524 154 GRSQSKHPPKIVVLGCMAERLKDKILDAD-KMVDVVCGPD 192 (524)
Q Consensus 154 ~~~~~~p~~~IvvgG~~at~~~e~~l~~~-~~vD~Vv~ge 192 (524)
+..+.+|+|||-..+ ++.+.+.. -++|.||.|-
T Consensus 195 ----~~~~~pi~vgfGI~~--~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 195 ----AYSAKPVLVGFGISK--PEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred ----hhcCCCEEEeCCCCC--HHHHHHHHHcCCCEEEECH
Confidence 112345888775443 23332222 3489999884
No 404
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=25.30 E-value=1.7e+02 Score=30.72 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=33.5
Q ss_pred CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEccccccc-HHHHHhhCCcceEEECC
Q 041524 113 ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERL-KDKILDADKMVDVVCGP 191 (524)
Q Consensus 113 ~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~-~e~~l~~~~~vD~Vv~g 191 (524)
..+|+++|.+.-.... .+.+.++++ | +..|+..|++|.+ +|.. .+++++ .++|.|-.|
T Consensus 119 agvD~ivID~a~g~s~---~~~~~ik~i---k------------~~~~~~~viaGNV-~T~e~a~~L~~--aGad~vkVG 177 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSE---HVIDMIKKI---K------------KKFPDVPVIAGNV-VTYEGAKDLID--AGADAVKVG 177 (352)
T ss_dssp TT-SEEEEE-SSTTSH---HHHHHHHHH---H------------HHSTTSEEEEEEE--SHHHHHHHHH--TT-SEEEES
T ss_pred cCCCEEEccccCccHH---HHHHHHHHH---H------------HhCCCceEEeccc-CCHHHHHHHHH--cCCCEEEEe
Confidence 3679999976543333 334445444 2 2357788887775 5544 344544 469998777
Q ss_pred CCc
Q 041524 192 DAY 194 (524)
Q Consensus 192 ege 194 (524)
=|-
T Consensus 178 iGp 180 (352)
T PF00478_consen 178 IGP 180 (352)
T ss_dssp SSS
T ss_pred ccC
Confidence 554
No 405
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=25.20 E-value=2.6e+02 Score=26.04 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=30.2
Q ss_pred CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEc-ccccccHHHHHhhCCcceEEECC
Q 041524 113 ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLG-CMAERLKDKILDADKMVDVVCGP 191 (524)
Q Consensus 113 ~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG-~~at~~~e~~l~~~~~vD~Vv~g 191 (524)
..+|+|.+.++++ .-..++...++.. .+.++|.+.| .-.+. -.++.+ .+||++..|
T Consensus 99 ~g~d~I~lD~~~~--~~~~~~v~~l~~~------------------~~~v~ie~SGGI~~~n-i~~ya~--~gvD~isvg 155 (169)
T PF01729_consen 99 AGADIIMLDNMSP--EDLKEAVEELREL------------------NPRVKIEASGGITLEN-IAEYAK--TGVDVISVG 155 (169)
T ss_dssp TT-SEEEEES-CH--HHHHHHHHHHHHH------------------TTTSEEEEESSSSTTT-HHHHHH--TT-SEEEEC
T ss_pred hCCCEEEecCcCH--HHHHHHHHHHhhc------------------CCcEEEEEECCCCHHH-HHHHHh--cCCCEEEcC
Confidence 3589999998865 2223333333222 3557777755 44444 445543 469998776
No 406
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.95 E-value=6.4e+02 Score=24.39 Aligned_cols=72 Identities=13% Similarity=0.013 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeE-EE-----------cCCCC
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDF-IC-----------GFCGE 423 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~f-I~-----------G~PgE 423 (524)
++.++.+++. |+..|.+.... ..+.++ +.+.+.++ |+.+.+-- -. .+|+.
T Consensus 17 ~e~~~~~~e~--G~~~vEl~~~~-----------~~~~~~---l~~~l~~~--gl~v~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR03234 17 LERFAAAAQA--GFTGVEYLFPY-----------DWDAEA---LKARLAAA--GLEQVLFNLPAGDWAAGERGIACLPGR 78 (254)
T ss_pred HHHHHHHHHc--CCCEEEecCCc-----------cCCHHH---HHHHHHHc--CCeEEEEeCCCCccccCCCccccCCcc
Confidence 6788888887 88888775310 122333 33445566 77765420 00 11221
Q ss_pred C---HHHHHHHHHHHHHcCCCeEEE
Q 041524 424 T---EEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 424 T---~ed~~~tl~~l~~l~~d~~~i 445 (524)
. .+.+++.++++.+++...+.+
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~i~~ 103 (254)
T TIGR03234 79 EEEFREGVALAIAYARALGCPQVNC 103 (254)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1 245556777888888876654
No 407
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=24.86 E-value=5.6e+02 Score=23.72 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
..-.+.+...|...||+... .+ ...+|+|+++...... ...+....++.. ...
T Consensus 12 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~-~g~~~~~~l~~~----------------~~~ 74 (229)
T PRK10161 12 APIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG-SGIQFIKHLKRE----------------SMT 74 (229)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCC-CHHHHHHHHHhc----------------ccc
Confidence 34456677778888886521 11 1368999986433222 222333333211 112
Q ss_pred CCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 160 HPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 160 p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
+..+|++...+.+. .....++ ....|++..+-....+.+.+..+.
T Consensus 75 ~~~pvi~ls~~~~~~~~~~~~~-~Ga~~~l~kp~~~~~L~~~i~~~~ 120 (229)
T PRK10161 75 RDIPVVMLTARGEEEDRVRGLE-TGADDYITKPFSPKELVARIKAVM 120 (229)
T ss_pred CCCCEEEEECCCCHHHHHHHHH-cCCCEEEECCCCHHHHHHHHHHHH
Confidence 45555554433332 1223333 344678887765555555555443
No 408
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=24.84 E-value=2.4e+02 Score=23.92 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
.+.+.+..+.+++..++..+..-|+-. +.-++.+.++.+.+.+.+.+.+.+|-..+|-.
T Consensus 16 ~~~~~~l~~~l~~~~~~~~v~~afle~----~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h 74 (117)
T cd03414 16 NADVAKIARLLEEGTGFARVETAFAAA----TRPSLPEALERLRALGARRVVVLPYLLFTGVL 74 (117)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecC----CCCCHHHHHHHHHHcCCCEEEEEechhcCCch
Confidence 467777888887776656677666642 33457778888888899999999999999964
No 409
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=24.75 E-value=6.3e+02 Score=24.25 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=68.5
Q ss_pred HHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEe
Q 041524 268 IVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYT 347 (524)
Q Consensus 268 Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~ 347 (524)
.++-++.+.+.|++++.++|-+-... +. + .-.++++++.+..+ ..+.+.
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~------------~~-----------------~-~n~~~~~~i~~~~~-~pv~~~ 80 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKR------------GR-----------------E-PLFELISNLAEECF-MPLTVG 80 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCccc------------CC-----------------C-CCHHHHHHHHHhCC-CCEEEE
Confidence 34444555567999999998654322 11 1 12345555554322 233332
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCC------
Q 041524 348 SPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFC------ 421 (524)
Q Consensus 348 s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~P------ 421 (524)
- ..-+.+-++.+.+. |+..+.+|-.... +.+.+.++++...+. .+.++.|+-.|+.
T Consensus 81 -g--gi~~~~d~~~~~~~--G~~~vilg~~~l~-----------~~~~~~~~~~~~~~~--~i~vsld~~~~~~~~~~~v 142 (232)
T TIGR03572 81 -G--GIRSLEDAKKLLSL--GADKVSINTAALE-----------NPDLIEEAARRFGSQ--CVVVSIDVKKELDGSDYKV 142 (232)
T ss_pred -C--CCCCHHHHHHHHHc--CCCEEEEChhHhc-----------CHHHHHHHHHHcCCc--eEEEEEEeccCCCCCcEEE
Confidence 1 12244455556666 9999999833221 123333333222111 2456667655422
Q ss_pred ---C---CCHHHHHHHHHHHHHcCCCeEEEEeeec
Q 041524 422 ---G---ETEEEHADTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 422 ---g---ET~ed~~~tl~~l~~l~~d~~~i~~~sp 450 (524)
| ++..+..+.+..+.+.+.+.+.+...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 143 YSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDR 177 (232)
T ss_pred EECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCc
Confidence 1 1334455666777778888887766433
No 410
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=24.73 E-value=5.7e+02 Score=26.23 Aligned_cols=56 Identities=29% Similarity=0.529 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHh---CCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCC
Q 041524 393 REAYLDLVQKIRQI---IPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRE 452 (524)
Q Consensus 393 ~e~~~~~v~~ir~~---~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~p 452 (524)
.+.++++|+.+++. +.||.+.++|..+.| .+++.++++.+.++++. +++.-+...-
T Consensus 187 ~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~---~~~i~~~l~~~~~~Gl~-i~ITElDv~~ 245 (320)
T PF00331_consen 187 RDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP---PEQIWNALDRFASLGLP-IHITELDVRD 245 (320)
T ss_dssp HHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS---HHHHHHHHHHHHTTTSE-EEEEEEEEES
T ss_pred HHHHHHHHHHHHhCCCccceechhhccCCCCC---HHHHHHHHHHHHHcCCc-eEEEeeeecC
Confidence 57788888888887 457788899998887 99999999999999865 7888776543
No 411
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=24.65 E-value=4.4e+02 Score=26.52 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=24.3
Q ss_pred CCCCEEE-EEccccccc-HHHHHhhCCcceEEECCCCcccHH
Q 041524 159 KHPPKIV-VLGCMAERL-KDKILDADKMVDVVCGPDAYRDLP 198 (524)
Q Consensus 159 ~p~~~Iv-vgG~~at~~-~e~~l~~~~~vD~Vv~gege~~l~ 198 (524)
+|++.++ -||+.++-. .+.+++..+.+|-.+++..-+.+|
T Consensus 212 ~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ERlP 253 (268)
T PF09370_consen 212 NPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSMERLP 253 (268)
T ss_dssp -TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTTTHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccchhhcc
Confidence 4666444 578887742 234677777789888887766555
No 412
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=24.63 E-value=2.7e+02 Score=28.71 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=25.1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEec
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQ 288 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~ 288 (524)
...+++.+++|++.+.+.|++.|.|.+-
T Consensus 49 ~r~s~d~l~~~v~~~~~~Gi~~v~lFgv 76 (320)
T cd04823 49 FRLSIDELLKEAEEAVDLGIPAVALFPV 76 (320)
T ss_pred eeeCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4568999999999999999999999875
No 413
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=24.63 E-value=5.6e+02 Score=23.67 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
..-.+.+...|...||.+.. .+ ...+|+|++..... .....++...++. ..
T Consensus 10 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~~~-~~~g~~~~~~lr~------------------~~ 70 (227)
T PRK09836 10 KKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLP-DVNGWDIVRMLRS------------------AN 70 (227)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECCCC-CCCHHHHHHHHHh------------------cC
Confidence 34456677788888885421 11 13689998864332 2223334443332 12
Q ss_pred CCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 160 HPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 160 p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
++.+|++...+... .....++ ....|++..+-....+...+..
T Consensus 71 ~~~pii~ls~~~~~~~~~~~~~-~Ga~~~l~kp~~~~~l~~~i~~ 114 (227)
T PRK09836 71 KGMPILLLTALGTIEHRVKGLE-LGADDYLVKPFAFAELLARVRT 114 (227)
T ss_pred CCCCEEEEEcCCCHHHHHHHHh-CCCCEEEeCCCCHHHHHHHHHH
Confidence 45555554433332 2223333 3345677776544444443333
No 414
>PRK14847 hypothetical protein; Provisional
Probab=24.62 E-value=8.1e+02 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=21.7
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEE
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLL 286 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~ 286 (524)
-.+.++++=++=.+.|.+.|+++|...
T Consensus 48 Gv~fs~eeKl~IA~~L~~lGVd~IEvG 74 (333)
T PRK14847 48 IEPMDGARKLRLFEQLVAVGLKEIEVA 74 (333)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 356788888888888888899998753
No 415
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=24.59 E-value=2.9e+02 Score=28.30 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhhCC-ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecC
Q 041524 327 RFADLLDRLSLEFP-EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLP 375 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~-~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~ig 375 (524)
...++++.+..... ..- .|.......+++.|.+. |..-+++.
T Consensus 221 ~~k~i~~~i~~~g~~~~~-----lH~cG~~~~~~~~l~~~--g~d~~~~~ 263 (343)
T PF01208_consen 221 YLKKIIDAIKEAGKDPVI-----LHICGNTTPILDDLADL--GADVLSVD 263 (343)
T ss_dssp HHHHHHHHHHHHETE-EE-----EEETTHG-GGHHHHHTS--S-SEEEE-
T ss_pred HHHHHHHHHHHhCCCceE-----EEECCchHHHHHHHHhc--CCCEEEEc
Confidence 35566677766543 222 23333345689999998 88888774
No 416
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=24.46 E-value=82 Score=28.11 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCCcceeecCcC-----CcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcC
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQ-----TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF 420 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiE-----Sgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~ 420 (524)
+++++.|+++ +++.+.+-.. +.=|.-+-.++++.+.+-+.+.|+.+++. ||.+.+.+=++.
T Consensus 3 ~~~~~~lk~~--~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~--Girv~ay~~~~~ 68 (132)
T PF14871_consen 3 EQFVDTLKEA--HVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHER--GIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHh--CCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHC--CCEEEEEEeeec
Confidence 4677778887 7777776322 22222235567777777889999999999 999888777664
No 417
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.44 E-value=7.1e+02 Score=24.78 Aligned_cols=81 Identities=6% Similarity=0.041 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc-
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE- 341 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~- 341 (524)
.+++.+++-++.+.+.|+..|.|.| .++.. .+.++.+++..+.+..+.
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~D-T~G~~------------------------------~P~~v~~lv~~l~~~~~~~ 183 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVD-SFGSM------------------------------YPEDIKRIISLLRSNLDKD 183 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEec-CCCCC------------------------------CHHHHHHHHHHHHHhcCCC
Confidence 4789999999999889999999886 33321 135688888888776442
Q ss_pred eEEEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 342 MRFRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 342 ~~ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
..+.+..-+ ...-....+..+. + |+.+++-.+-
T Consensus 184 ~~i~~H~Hn~~Gla~AN~laA~~-a--Ga~~vd~s~~ 217 (266)
T cd07944 184 IKLGFHAHNNLQLALANTLEAIE-L--GVEIIDATVY 217 (266)
T ss_pred ceEEEEeCCCccHHHHHHHHHHH-c--CCCEEEEecc
Confidence 556554211 1111234455553 4 9999886654
No 418
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=24.43 E-value=6.6e+02 Score=24.39 Aligned_cols=131 Identities=11% Similarity=0.009 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEE
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR 345 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir 345 (524)
.+-++-++.+.++|+++++++|-+-. . |. ..-.++++++.+... +.+.
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~-~------------~~------------------~~n~~~i~~i~~~~~-~~v~ 82 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAI-M------------GR------------------GDNDEAIRELAAAWP-LGLW 82 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCccc-c------------CC------------------CccHHHHHHHHHhCC-CCEE
Confidence 35566667777889999999986522 1 11 123456666655321 2232
Q ss_pred EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCC--CC
Q 041524 346 YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFC--GE 423 (524)
Q Consensus 346 ~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~P--gE 423 (524)
+.- ..-+.|-++.+-.+ |+.++.+|-++.+++. +.++++.+.+. .+.++.|+--|-- ..
T Consensus 83 vgG---Gir~~edv~~~l~~--Ga~~viigt~~~~~~~------------~~~~~~~~~~~--~iivslD~~~~~~~~~~ 143 (233)
T cd04723 83 VDG---GIRSLENAQEWLKR--GASRVIVGTETLPSDD------------DEDRLAALGEQ--RLVLSLDFRGGQLLKPT 143 (233)
T ss_pred Eec---CcCCHHHHHHHHHc--CCCeEEEcceeccchH------------HHHHHHhcCCC--CeEEEEeccCCeecccc
Confidence 321 22244556665567 9999999988766322 22222222111 3556666643310 13
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEEee
Q 041524 424 TEEEHADTLTLMKAVGYDMAYMFAY 448 (524)
Q Consensus 424 T~ed~~~tl~~l~~l~~d~~~i~~~ 448 (524)
+..+..+.++.+.+. ++.+.+...
T Consensus 144 ~~~~~~~~~~~~~~~-~~~li~~di 167 (233)
T cd04723 144 DFIGPEELLRRLAKW-PEELIVLDI 167 (233)
T ss_pred CcCCHHHHHHHHHHh-CCeEEEEEc
Confidence 455566677777777 777666554
No 419
>COG5587 Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=81 Score=29.66 Aligned_cols=64 Identities=23% Similarity=0.365 Sum_probs=48.1
Q ss_pred CCCcceeecCcCC---------cCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeE-E----EcCCCCCHHHHH
Q 041524 366 PNVCKYIHLPAQT---------GNSAVLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDF-I----CGFCGETEEEHA 429 (524)
Q Consensus 366 ~~G~~~i~igiES---------gs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~f-I----~G~PgET~ed~~ 429 (524)
+.||-+|+||++- --.+.|.+|++-. ..+.+..+++.+++. |+.++.+= + -|||.-|+-|+.
T Consensus 101 ~tg~FYI~igl~gcfagvawWqP~~~ll~amR~aI~~~Pd~framv~~lkkn--gl~ls~~d~lkRtPRGFehvtd~dlv 178 (228)
T COG5587 101 PTGSFYIQIGLDGCFAGVAWWQPASDLLRAMRQAIFDNPDSFRAMVDPLKKN--GLTLSEDDKLKRTPRGFEHVTDFDLV 178 (228)
T ss_pred CCCcEEEEecCCcceeeeeeeCcHHHHHHHHHHHHhcCcHHHHHHHhHHHhC--CceecchhhhhcCCCCCCccCchhHH
Confidence 3488889988873 2457888999853 678899999999999 98887642 2 388877887765
Q ss_pred HH
Q 041524 430 DT 431 (524)
Q Consensus 430 ~t 431 (524)
+.
T Consensus 179 da 180 (228)
T COG5587 179 DA 180 (228)
T ss_pred HH
Confidence 54
No 420
>PRK01060 endonuclease IV; Provisional
Probab=24.20 E-value=6.9e+02 Score=24.54 Aligned_cols=84 Identities=4% Similarity=0.026 Sum_probs=51.2
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcE---E--EEeEEEcCCCCC-----
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG---L--SSDFICGFCGET----- 424 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~---i--~~~fI~G~PgET----- 424 (524)
-++.++.+++. |+..+.|-+.+... ......+.+.+.++-+.+.+. |+. + .+-+.+.+-...
T Consensus 14 ~~~~l~~~~~~--G~d~vEl~~~~p~~----~~~~~~~~~~~~~lk~~~~~~--gl~~~~~~~h~~~~~nl~~~d~~~r~ 85 (281)
T PRK01060 14 LEGAVAEAAEI--GANAFMIFTGNPQQ----WKRKPLEELNIEAFKAACEKY--GISPEDILVHAPYLINLGNPNKEILE 85 (281)
T ss_pred HHHHHHHHHHc--CCCEEEEECCCCCC----CcCCCCCHHHHHHHHHHHHHc--CCCCCceEEecceEecCCCCCHHHHH
Confidence 46788888888 99998886653221 113345666666666677777 665 2 233333332222
Q ss_pred --HHHHHHHHHHHHHcCCCeEEEE
Q 041524 425 --EEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 425 --~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
.+.+++.++++.+++...+.+.
T Consensus 86 ~s~~~~~~~i~~A~~lga~~vv~h 109 (281)
T PRK01060 86 KSRDFLIQEIERCAALGAKLLVFH 109 (281)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEc
Confidence 3456777788888888866553
No 421
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=24.11 E-value=5.6e+02 Score=23.45 Aligned_cols=95 Identities=8% Similarity=0.105 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
..-.+.+...|...||++.. .+ ...+|+|+++...... ...+..+.++. ..
T Consensus 13 ~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~-~g~~~~~~l~~------------------~~ 73 (228)
T PRK11083 13 QAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDI-SGFELCRQLLA------------------FH 73 (228)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCCCCCC-CHHHHHHHHHh------------------hC
Confidence 34456677788888886421 11 1458999986543332 22233333321 12
Q ss_pred CCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 160 HPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 160 p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
+..+|++...+... .....++ ....|++..+.....+...+..+
T Consensus 74 ~~~~ii~ls~~~~~~~~~~a~~-~Ga~~~l~kp~~~~~l~~~i~~~ 118 (228)
T PRK11083 74 PALPVIFLTARSDEVDRLVGLE-IGADDYVAKPFSPREVAARVRTI 118 (228)
T ss_pred CCCCEEEEEcCCcHHHHHHHhh-cCCCeEEECCCCHHHHHHHHHHH
Confidence 55555544433322 1222332 33456777765554454444443
No 422
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=24.10 E-value=9.7e+02 Score=26.23 Aligned_cols=79 Identities=6% Similarity=0.004 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeE-EEcCCCCCHHHH
Q 041524 350 HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDF-ICGFCGETEEEH 428 (524)
Q Consensus 350 ~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~f-I~G~PgET~ed~ 428 (524)
.|+++-+..++..++. |+..+-+.- .+| ..+.....++.+++. |..+...+ ..+-|..|.+-+
T Consensus 102 ypddvv~~fv~~a~~~--Gidi~Rifd---------~ln---d~~n~~~ai~~ak~~--G~~~~~~i~yt~sp~~t~~y~ 165 (468)
T PRK12581 102 YADDIVDKFISLSAQN--GIDVFRIFD---------ALN---DPRNIQQALRAVKKT--GKEAQLCIAYTTSPVHTLNYY 165 (468)
T ss_pred CcchHHHHHHHHHHHC--CCCEEEEcc---------cCC---CHHHHHHHHHHHHHc--CCEEEEEEEEEeCCcCcHHHH
Confidence 3555556666666666 777666542 111 455556666666666 54332211 112355555555
Q ss_pred HHHHHHHHHcCCCeEE
Q 041524 429 ADTLTLMKAVGYDMAY 444 (524)
Q Consensus 429 ~~tl~~l~~l~~d~~~ 444 (524)
.+.++.+.+.+.+.+.
T Consensus 166 ~~~a~~l~~~Gad~I~ 181 (468)
T PRK12581 166 LSLVKELVEMGADSIC 181 (468)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 5555555555555444
No 423
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=24.09 E-value=1.9e+02 Score=32.06 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHH
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTL 432 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl 432 (524)
.+.+++.++|+.+++. ||.|..|+++..-+..-+-+++.+
T Consensus 73 Gt~~df~~Lv~~ah~~--Gi~vilD~V~NH~s~~~~~f~~~~ 112 (539)
T TIGR02456 73 GTIDDFKDFVDEAHAR--GMRVIIDLVLNHTSDQHPWFQEAR 112 (539)
T ss_pred CCHHHHHHHHHHHHHC--CCEEEEEeccCcCCCCCHHHHHHh
Confidence 3789999999999999 999999999999877666665543
No 424
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=24.01 E-value=2.2e+02 Score=29.37 Aligned_cols=28 Identities=36% Similarity=0.566 Sum_probs=22.8
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEec
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQ 288 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~ 288 (524)
...+++.+++|++.+.+.|++.|.|.+-
T Consensus 52 ~r~sid~l~~~v~~~~~~GI~~v~lFgv 79 (324)
T PF00490_consen 52 YRYSIDSLVKEVEEAVDLGIRAVILFGV 79 (324)
T ss_dssp EEEEHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEEee
Confidence 3458999999999999999999998874
No 425
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=23.99 E-value=7e+02 Score=26.89 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCcEEEEEeccCC
Q 041524 270 KEVDELWKEGVKEVTLLGQNVN 291 (524)
Q Consensus 270 ~Ei~~l~~~G~kei~l~d~n~~ 291 (524)
+.++.+.+.|+..|.+--|.++
T Consensus 152 e~l~~l~~aG~~risiGvqS~~ 173 (453)
T PRK09249 152 EMLDALRELGFNRLSLGVQDFD 173 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCC
Confidence 4456666779999988766654
No 426
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.94 E-value=2e+02 Score=30.76 Aligned_cols=59 Identities=5% Similarity=0.062 Sum_probs=36.5
Q ss_pred CCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCC
Q 041524 114 NAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192 (524)
Q Consensus 114 ~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ge 192 (524)
.+|+|.|.+.. +.-..+++.++++ | +..|+..|++|++..-.....+.+ .++|+|..|-
T Consensus 165 GvDvI~iD~a~---g~~~~~~~~v~~i---k------------~~~p~~~vi~g~V~T~e~a~~l~~--aGaD~I~vG~ 223 (404)
T PRK06843 165 HVDILVIDSAH---GHSTRIIELVKKI---K------------TKYPNLDLIAGNIVTKEAALDLIS--VGADCLKVGI 223 (404)
T ss_pred CCCEEEEECCC---CCChhHHHHHHHH---H------------hhCCCCcEEEEecCCHHHHHHHHH--cCCCEEEECC
Confidence 57888885543 2234456666655 1 235788888888765544555554 4799986553
No 427
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.61 E-value=2.6e+02 Score=27.29 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHCCCee-ccCCC-----------CCCcEEEEeeccCcch---HHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 92 DMEIVLSIMKNAGYSE-VINVP-----------ENAEVIFINTCAIRDY---AEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 92 d~e~i~~~L~~~Gy~~-~~~~~-----------~~aDvv~intc~v~~~---a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+...+...+++.|... ++-+| ...|.|+|.|--.-.. -...+.+.+++++.+..
T Consensus 98 ~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~----------- 166 (223)
T PRK08745 98 HVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKID----------- 166 (223)
T ss_pred cHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHH-----------
Confidence 4666778888888752 12222 5899999966433221 12234556665544432
Q ss_pred ccCCCCEEEE-EcccccccHHHHHhhCCcceEEECCCC
Q 041524 157 QSKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDA 193 (524)
Q Consensus 157 ~~~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~geg 193 (524)
+...+..|-| ||.-.+.. ..+.+ .++|++|.|-+
T Consensus 167 ~~~~~~~IeVDGGI~~eti-~~l~~--aGaDi~V~GSa 201 (223)
T PRK08745 167 ALGKPIRLEIDGGVKADNI-GAIAA--AGADTFVAGSA 201 (223)
T ss_pred hcCCCeeEEEECCCCHHHH-HHHHH--cCCCEEEEChh
Confidence 2234566766 45555543 34443 46899998854
No 428
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.52 E-value=5.8e+02 Score=26.82 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=17.2
Q ss_pred HHHHHHHHCCCcEEEEEeccCC
Q 041524 270 KEVDELWKEGVKEVTLLGQNVN 291 (524)
Q Consensus 270 ~Ei~~l~~~G~kei~l~d~n~~ 291 (524)
+.++.+.+.|+..|.+--|.++
T Consensus 108 e~l~~Lk~~Gv~risiGvqS~~ 129 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGVQSFS 129 (378)
T ss_pred HHHHHHHHcCCCEEEeccCcCC
Confidence 6677788889999988766654
No 429
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.39 E-value=3e+02 Score=28.43 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhC-CCcEEEEeEEE--c-CCCCCHHHHHHHHHHHHHcCCCeEEEEee
Q 041524 395 AYLDLVQKIRQII-PDVGLSSDFIC--G-FCGETEEEHADTLTLMKAVGYDMAYMFAY 448 (524)
Q Consensus 395 ~~~~~v~~ir~~~-pgi~i~~~fI~--G-~PgET~ed~~~tl~~l~~l~~d~~~i~~~ 448 (524)
-.++.++.+|+.+ +++.|..++=. + -.|-|.++..+.++.+.+.+++.+.+..-
T Consensus 201 f~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 201 LLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 4567888888876 35555554321 0 12568888888888888889998887643
No 430
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=23.35 E-value=2.8e+02 Score=28.63 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=25.1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEec
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQ 288 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~ 288 (524)
...+++.+++|++.+.+.|++.|.|.+-
T Consensus 54 ~r~s~d~l~~~v~~~~~~Gi~av~LFgv 81 (323)
T PRK09283 54 YRLSIDLLVKEAEEAVELGIPAVALFGV 81 (323)
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEeCc
Confidence 4568999999999999999999999875
No 431
>PRK15447 putative protease; Provisional
Probab=23.01 E-value=1.9e+02 Score=29.46 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCC--CCHHHH
Q 041524 351 PKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCG--ETEEEH 428 (524)
Q Consensus 351 p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~Pg--ET~ed~ 428 (524)
|..--+.+...+++. |...|.+|.+..+.+ ..++.+++.++++.++++ |..+...+ |. ..++++
T Consensus 13 p~~~~~~~~~~~~~~--gaDaVY~g~~~~~~R------~~f~~~~l~e~v~~~~~~--gkkvyva~----p~i~~~~~e~ 78 (301)
T PRK15447 13 PKETVRDFYQRAADS--PVDIVYLGETVCSKR------RELKVGDWLELAERLAAA--GKEVVLST----LALVEAPSEL 78 (301)
T ss_pred CCCCHHHHHHHHHcC--CCCEEEECCccCCCc------cCCCHHHHHHHHHHHHHc--CCEEEEEe----cccccCHHHH
Confidence 444456788888888 999999998776654 268999999999999999 76654322 22 124455
Q ss_pred HHHHHHHHHcCCCeE
Q 041524 429 ADTLTLMKAVGYDMA 443 (524)
Q Consensus 429 ~~tl~~l~~l~~d~~ 443 (524)
....+++.. +.+.+
T Consensus 79 ~~l~~~l~~-~~~~v 92 (301)
T PRK15447 79 KELRRLVEN-GEFLV 92 (301)
T ss_pred HHHHHHHhc-CCCEE
Confidence 555554443 44443
No 432
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.93 E-value=5.1e+02 Score=22.60 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHhhCCceEEEEecCC------------CCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH
Q 041524 326 LRFADLLDRLSLEFPEMRFRYTSPH------------PKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393 (524)
Q Consensus 326 ~~~~~Ll~~l~~~~~~~~ir~~s~~------------p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~ 393 (524)
..+..+-+.+.+..|...+++.+.. ...-.++.|+.|.+. |+++|.+=.=. +-.|.-.
T Consensus 17 ~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~--G~~~V~V~Pl~--------l~~G~e~ 86 (127)
T cd03412 17 KTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAAD--GYTEVIVQSLH--------IIPGEEY 86 (127)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHC--CCCEEEEEeCe--------eECcHHH
Confidence 4577777777777776655544321 011236777777776 88875431110 1113334
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCC-CCCHHHHHHHHHHHH
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFC-GETEEEHADTLTLMK 436 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~P-gET~ed~~~tl~~l~ 436 (524)
+++.+.++.++ .|+. .+.+|-| +.+.+|.+..++.+.
T Consensus 87 ~di~~~v~~~~--~~~~----~i~~g~pLl~~~~d~~~v~~al~ 124 (127)
T cd03412 87 EKLKREVDAFK--KGFK----KIKLGRPLLYSPEDYEEVAAALK 124 (127)
T ss_pred HHHHHHHHHHh--CCCc----eEEEccCCCCCHHHHHHHHHHHH
Confidence 55566666555 2343 4555654 677888877776654
No 433
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=22.82 E-value=4.2e+02 Score=26.25 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=29.3
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYN 294 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~ 294 (524)
-+.+.|+|++.+....++|-.-+.+...+...|+
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYg 90 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYG 90 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHH
Confidence 3678999999999999999888889888888884
No 434
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=22.79 E-value=3.6e+02 Score=23.05 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCeecc-CCCC--------CCcE--EEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 91 NDMEIVLSIMKNAGYSEVI-NVPE--------NAEV--IFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 91 ~d~e~i~~~L~~~Gy~~~~-~~~~--------~aDv--v~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
.=++.+.+.|.+.||+++. ...+ .+|+ |+| +.. ..........+.++ + +++
T Consensus 4 a~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi-~~d--~~~~~~~~~ll~~i---~------------~~~ 65 (115)
T PF03709_consen 4 AASRELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVI-SWD--GEEEDEAQELLDKI---R------------ERN 65 (115)
T ss_dssp HHHHHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEE-ECH--HHHHHHHHHHHHHH---H------------HHS
T ss_pred HHHHHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEE-Ecc--cccchhHHHHHHHH---H------------HhC
Confidence 3467788999999998632 2223 5666 444 222 11122222333332 1 235
Q ss_pred CCCEEEEEcc--cccccHHHHHh
Q 041524 160 HPPKIVVLGC--MAERLKDKILD 180 (524)
Q Consensus 160 p~~~IvvgG~--~at~~~e~~l~ 180 (524)
.+++|.+.+. ..+..|.+++.
T Consensus 66 ~~iPVFl~~~~~~~~~l~~~~l~ 88 (115)
T PF03709_consen 66 FGIPVFLLAERDTTEDLPAEVLG 88 (115)
T ss_dssp TT-EEEEEESCCHHHCCCHHHHC
T ss_pred CCCCEEEEecCCCcccCCHHHHh
Confidence 7899999988 67777888875
No 435
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=22.78 E-value=1.6e+02 Score=33.28 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGE 423 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE 423 (524)
+.+++.++|+.+++. ||.|..|+++..-+.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~ 233 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPK 233 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCC
Confidence 688999999999999 999999999876543
No 436
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.77 E-value=6.8e+02 Score=25.02 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHh
Q 041524 393 REAYLDLVQKIRQI 406 (524)
Q Consensus 393 ~e~~~~~v~~ir~~ 406 (524)
.++.++..+.+.+.
T Consensus 79 ~~~~i~~a~~a~~~ 92 (285)
T TIGR00674 79 TEEAISLTKFAEDV 92 (285)
T ss_pred HHHHHHHHHHHHHc
Confidence 55566666666665
No 437
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.73 E-value=5.5e+02 Score=25.33 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEe
Q 041524 395 AYLDLVQKIRQIIPDVGLSSD 415 (524)
Q Consensus 395 ~~~~~v~~ir~~~pgi~i~~~ 415 (524)
.+.++++.+.+. |+.+...
T Consensus 134 ~l~~l~~~A~~~--Gv~l~lE 152 (279)
T TIGR00542 134 GLKEAVELAARA--QVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHc--CCEEEEe
Confidence 344444445554 5554444
No 438
>PLN02591 tryptophan synthase
Probab=22.65 E-value=6.5e+02 Score=24.98 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEE
Q 041524 424 TEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 424 T~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
..|+..+..+.+++++++.+.+.
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 34666677777888888766554
No 439
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.33 E-value=5e+02 Score=25.75 Aligned_cols=81 Identities=10% Similarity=0.166 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc-
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE- 341 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~- 341 (524)
.+++.+++-++.+.+.|+..|.|.| .++.. .+..+.++++.+.+..+.
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~D-T~G~~------------------------------~P~~v~~lv~~l~~~~~~~ 188 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPD-TVGYL------------------------------TPEEFGELIKKLKENVPNI 188 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC-CCCCC------------------------------CHHHHHHHHHHHHHhCCCC
Confidence 4788888888899888999998876 33321 135688888888887664
Q ss_pred -eEEEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 342 -MRFRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 342 -~~ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
..+.+..-+ ...-....+..+. + |+.+|+-.+-
T Consensus 189 ~i~l~~H~Hn~~GlA~An~laAi~-a--G~~~iD~s~~ 223 (268)
T cd07940 189 KVPISVHCHNDLGLAVANSLAAVE-A--GARQVECTIN 223 (268)
T ss_pred ceeEEEEecCCcchHHHHHHHHHH-h--CCCEEEEEee
Confidence 455554211 1111244555554 4 9999886554
No 440
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=22.23 E-value=7.9e+02 Score=26.05 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCcEEEEEeccCC
Q 041524 270 KEVDELWKEGVKEVTLLGQNVN 291 (524)
Q Consensus 270 ~Ei~~l~~~G~kei~l~d~n~~ 291 (524)
+.++.+.+.|+..|.+--|.++
T Consensus 116 e~l~~l~~~GvnrislGvQS~~ 137 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQAFQ 137 (400)
T ss_pred HHHHHHHHCCCCEEEEEcccCC
Confidence 4566777789999998777764
No 441
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=22.22 E-value=7.3e+02 Score=24.10 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=61.1
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|.-++|+.+.-++.|.+.|++-|.++= ++ ....+.++.+.+..
T Consensus 19 lr~~~~e~a~~~a~Ali~gGi~~IEITl---~s---------------------------------p~a~e~I~~l~~~~ 62 (211)
T COG0800 19 IRGDDVEEALPLAKALIEGGIPAIEITL---RT---------------------------------PAALEAIRALAKEF 62 (211)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEec---CC---------------------------------CCHHHHHHHHHHhC
Confidence 3667899999999999999999877652 11 13567778888777
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR 389 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R 389 (524)
++.-+.-. ..++++.++...++ |++.+.-| ..++++.+.-++
T Consensus 63 p~~lIGAG----TVL~~~q~~~a~~a--Ga~fiVsP--~~~~ev~~~a~~ 104 (211)
T COG0800 63 PEALIGAG----TVLNPEQARQAIAA--GAQFIVSP--GLNPEVAKAANR 104 (211)
T ss_pred cccEEccc----cccCHHHHHHHHHc--CCCEEECC--CCCHHHHHHHHh
Confidence 75444333 34788888888888 99886644 456777776544
No 442
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=22.02 E-value=1e+02 Score=34.99 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeE----EEcCCCC
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDF----ICGFCGE 423 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~f----I~G~PgE 423 (524)
.+.++++.+|+.+++. ||.+.+|+ |++|||+
T Consensus 644 Gs~~dL~~AikALH~~--GiqviaDwVpdQiYnLpg~ 678 (809)
T PF02324_consen 644 GSVEDLRNAIKALHAA--GIQVIADWVPDQIYNLPGK 678 (809)
T ss_dssp B-HHHHHHHHHHHHHT--T-EEEEEE-TSEE---SEE
T ss_pred CCHHHHHHHHHHHHHc--CcchhhhhchHhhhCCCCc
Confidence 3799999999999999 99988776 8899986
No 443
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.00 E-value=7e+02 Score=24.53 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEE
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR 345 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir 345 (524)
.+-++-++.+.++|+++++++|-+-... |. ..-.++++++.+.. ..+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~------------g~------------------~~n~~~i~~i~~~~--~~v~ 77 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIE------------NS------------------VENLPVLEKLSEFA--EHIQ 77 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCccc------------CC------------------cchHHHHHHHHhhc--CcEE
Confidence 3455566777778999999998653211 21 12455666666542 1232
Q ss_pred EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCc-CHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc---CC
Q 041524 346 YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTG-NSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG---FC 421 (524)
Q Consensus 346 ~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESg-s~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G---~P 421 (524)
+. -..-+.+-++.+-+. |+.++.+|-++. +++.++.+ .+....+.++.|+-=| ..
T Consensus 78 vG---GGIrs~e~~~~~l~~--Ga~rvvigT~a~~~p~~l~~~----------------~~~~~~ivvslD~k~g~v~~~ 136 (241)
T PRK14114 78 IG---GGIRSLDYAEKLRKL--GYRRQIVSSKVLEDPSFLKFL----------------KEIDVEPVFSLDTRGGKVAFK 136 (241)
T ss_pred Ee---cCCCCHHHHHHHHHC--CCCEEEECchhhCCHHHHHHH----------------HHhCCCEEEEEEccCCEEeeC
Confidence 22 122355666666667 999999987765 33333332 1221234566665322 11
Q ss_pred C---CCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 422 G---ETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 422 g---ET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
| .|.-+..+.++.+.+.++..+-+ .-.-+.||-
T Consensus 137 gw~~~~~~~~~e~~~~~~~~g~~~ii~-tdI~rdGt~ 172 (241)
T PRK14114 137 GWLAEEEIDPVSLLKRLKEYGLEEIVH-TEIEKDGTL 172 (241)
T ss_pred CCeecCCCCHHHHHHHHHhcCCCEEEE-EeechhhcC
Confidence 2 24445566667777777765433 223456663
No 444
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=21.88 E-value=6.6e+02 Score=23.46 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
..-.+.+...|...||++.. .+ ...+|+|+++...... ...++...++. ..
T Consensus 15 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~-~g~~~~~~lr~------------------~~ 75 (239)
T PRK09468 15 MRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGE-DGLSICRRLRS------------------QN 75 (239)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCC-CHHHHHHHHHh------------------cC
Confidence 34456677788888887521 11 1468999986543322 22333333321 12
Q ss_pred CCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 160 HPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 160 p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
+..+|++....... .....++ ....|++..+-....+...+..+
T Consensus 76 ~~~pii~ls~~~~~~~~~~~l~-~Ga~~~l~kP~~~~~L~~~i~~~ 120 (239)
T PRK09468 76 NPTPIIMLTAKGEEVDRIVGLE-IGADDYLPKPFNPRELLARIRAV 120 (239)
T ss_pred CCCCEEEEECCCcHHHHHHHHh-cCCCeEEECCCCHHHHHHHHHHH
Confidence 44455544333322 1222333 34457887775554444444443
No 445
>PLN02428 lipoic acid synthase
Probab=21.83 E-value=2.5e+02 Score=29.46 Aligned_cols=74 Identities=12% Similarity=0.256 Sum_probs=47.9
Q ss_pred HHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHH
Q 041524 357 ELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMK 436 (524)
Q Consensus 357 elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~ 436 (524)
++++.+.+. |.+++ .+.|++-..+ .....+.+.++++.+++..|++.+.. ++.+|=++ .+.++.+.
T Consensus 137 ~vA~~v~~~--Glk~v--vltSg~rddl----~D~ga~~~~elir~Ir~~~P~i~Ie~-L~pdf~~d-----~elL~~L~ 202 (349)
T PLN02428 137 NVAEAIASW--GVDYV--VLTSVDRDDL----PDGGSGHFAETVRRLKQLKPEILVEA-LVPDFRGD-----LGAVETVA 202 (349)
T ss_pred HHHHHHHHc--CCCEE--EEEEcCCCCC----CcccHHHHHHHHHHHHHhCCCcEEEE-eCccccCC-----HHHHHHHH
Confidence 566666666 88764 5566542222 12457889999999999878776555 33333332 56788888
Q ss_pred HcCCCeEE
Q 041524 437 AVGYDMAY 444 (524)
Q Consensus 437 ~l~~d~~~ 444 (524)
+.+++.++
T Consensus 203 eAG~d~i~ 210 (349)
T PLN02428 203 TSGLDVFA 210 (349)
T ss_pred HcCCCEEc
Confidence 88888644
No 446
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=21.81 E-value=6.4e+02 Score=23.31 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=31.9
Q ss_pred ceeecCcCCcCHHHHhhhCC-CCCHHHHHHHHHHHHHhCCCcEEE-EeEEEcCCCC
Q 041524 370 KYIHLPAQTGNSAVLERMRR-GYTREAYLDLVQKIRQIIPDVGLS-SDFICGFCGE 423 (524)
Q Consensus 370 ~~i~igiESgs~~vL~~m~R-~~t~e~~~~~v~~ir~~~pgi~i~-~~fI~G~PgE 423 (524)
..+++-++++. .|+| |.+.+++.++++.+.+. |++.+. ..+-+|.-..
T Consensus 107 ~~v~lrv~~g~-----~~~R~G~~~~e~~~~~~~i~~~-~~l~l~Gl~~H~~~~~~ 156 (211)
T cd06808 107 ARVLLRIDTGD-----ENGKFGVRPEELKALLERAKEL-PHLRLVGLHTHFGSADE 156 (211)
T ss_pred ceEEEEEcCCC-----CCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEEEecCCCCC
Confidence 34677777665 6777 78889999999998775 556544 3444554333
No 447
>PRK09989 hypothetical protein; Provisional
Probab=21.81 E-value=7.5e+02 Score=24.06 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred cCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchh
Q 041524 247 MCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGL 326 (524)
Q Consensus 247 ~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 326 (524)
+|.||.- ..--+...|.++.++.++.+ |++.|.|.. ...+
T Consensus 1 ~~~~~~~--~~~~~~~~~l~~~l~~~~~~---Gfd~VEl~~--~~~~--------------------------------- 40 (258)
T PRK09989 1 MPRFAAN--LSMMFTEVPFIERFAAARKA---GFDAVEFLF--PYDY--------------------------------- 40 (258)
T ss_pred CCceeee--hhhhhcCCCHHHHHHHHHHc---CCCEEEECC--cccC---------------------------------
Q ss_pred hHHHHHHHHHhhCCceEEEEecCCCCCCC--------------------HHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 327 RFADLLDRLSLEFPEMRFRYTSPHPKDFP--------------------DELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~--------------------~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
...++.+.+.+. .+.+......+..++ .+.++..++. ||+.|.+..-......-..
T Consensus 41 ~~~~~~~~l~~~--Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~l--g~~~v~v~~g~~~~~~~~~ 116 (258)
T PRK09989 41 STLQIQKQLEQN--HLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALAL--NCEQVHVMAGVVPAGEDAE 116 (258)
T ss_pred CHHHHHHHHHHc--CCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHh--CcCEEEECccCCCCCCCHH
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc--CCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 387 MRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG--FCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 387 m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G--~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
-......+.+.++.+.+.+. |+.+..-.|-- .++---.+..++++++++++.+.+.+
T Consensus 117 ~~~~~~~~~l~~l~~~a~~~--gv~l~lE~l~~~~~~~~~~~~~~~~~~ll~~v~~~~v~l 175 (258)
T PRK09989 117 RYRAVFIDNLRYAADRFAPH--GKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFI 175 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhc--CCEEEEEeCCCCCCCCCccCCHHHHHHHHHHcCCCCeEE
No 448
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=21.60 E-value=3.1e+02 Score=25.55 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCC-----------------------CCCCcEEEEeeccCcchHHH
Q 041524 75 SQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINV-----------------------PENAEVIFINTCAIRDYAEH 131 (524)
Q Consensus 75 ~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~-----------------------~~~aDvv~intc~v~~~a~~ 131 (524)
.+++|.+.-||.| ....+..|++.|+++++-. .++||+|++ .+-+..-.
T Consensus 3 ~~k~IAViGyGsQ-----G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~---L~PD~~q~ 74 (165)
T PF07991_consen 3 KGKTIAVIGYGSQ-----GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVML---LLPDEVQP 74 (165)
T ss_dssp CTSEEEEES-SHH-----HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE----S-HHHHH
T ss_pred CCCEEEEECCChH-----HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEE---eCChHHHH
Confidence 4566888888832 5556666777776543110 148999999 33344555
Q ss_pred HHH
Q 041524 132 KVW 134 (524)
Q Consensus 132 ~~~ 134 (524)
++|
T Consensus 75 ~vy 77 (165)
T PF07991_consen 75 EVY 77 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 566
No 449
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=21.09 E-value=6.5e+02 Score=23.12 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
..-.+.+...|...||+... .+ ...+|+|+++.-.. .....+..+.++. .
T Consensus 11 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~-~~~g~~~~~~lr~-------------------~ 70 (225)
T PRK10529 11 QAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLP-DGDGIEFIRDLRQ-------------------W 70 (225)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHc-------------------C
Confidence 33456677788888886421 11 13589999864332 2223333333321 1
Q ss_pred CCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 160 HPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 160 p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
+..+|+ +.+..........++ ....|++..+-....+...+..+
T Consensus 71 ~~~pvi~lt~~~~~~~~~~~~~-~ga~~~l~kP~~~~~l~~~i~~~ 115 (225)
T PRK10529 71 SAIPVIVLSARSEESDKIAALD-AGADDYLSKPFGIGELQARLRVA 115 (225)
T ss_pred CCCCEEEEECCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHH
Confidence 333444 444322222223333 34567888876555555544443
No 450
>PRK08508 biotin synthase; Provisional
Probab=21.03 E-value=4.2e+02 Score=26.59 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEE
Q 041524 392 TREAYLDLVQKIRQIIPDVGL 412 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i 412 (524)
..|.+.+.++.+++..|++.+
T Consensus 73 ~~e~~~ei~~~ik~~~p~l~i 93 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVPGLHL 93 (279)
T ss_pred cHHHHHHHHHHHHhhCCCcEE
Confidence 455666666666665555443
No 451
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=21.03 E-value=6.6e+02 Score=23.12 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCC
Q 041524 92 DMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHP 161 (524)
Q Consensus 92 d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 161 (524)
-.+.+...|...||++.. .+ ...+|+|++....... ...++...++. ..+.
T Consensus 12 ~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~l~~~-~g~~l~~~lr~------------------~~~~ 72 (223)
T PRK10816 12 LRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDE-DGLSLIRRWRS------------------NDVS 72 (223)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECCCCCC-CHHHHHHHHHh------------------cCCC
Confidence 355677788888886421 11 1468999986443222 22223333321 1244
Q ss_pred CEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 162 PKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 162 ~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.+|++.....+. .....++ ....|++..+-....+...+..+
T Consensus 73 ~pii~ls~~~~~~~~~~~l~-~Ga~d~l~kp~~~~eL~~~i~~~ 115 (223)
T PRK10816 73 LPILVLTARESWQDKVEVLS-AGADDYVTKPFHIEEVMARMQAL 115 (223)
T ss_pred CCEEEEEcCCCHHHHHHHHH-cCCCeeEeCCCCHHHHHHHHHHH
Confidence 555554433332 2223333 34457888776554444444443
No 452
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=20.97 E-value=2.3e+02 Score=31.47 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHH
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTL 432 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl 432 (524)
+.+++.++|+.+++. ||.|..|+++...+..-.-+++.+
T Consensus 73 t~~~~~~lv~~ah~~--gi~vilD~v~NH~~~~~~~f~~~~ 111 (543)
T TIGR02403 73 TMADFEELVSEAKKR--NIKIMLDMVFNHTSTEHEWFKKAL 111 (543)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECccccccchHHHHHhh
Confidence 789999999999999 999999999988776655555443
No 453
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=20.80 E-value=2.2e+02 Score=29.87 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHHHh
Q 041524 391 YTREAYLDLVQKIRQI 406 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~ 406 (524)
.+.+++.+..+.+.++
T Consensus 42 W~~e~i~~~k~~ie~~ 57 (351)
T PF03786_consen 42 WDYEEIRALKERIEAA 57 (351)
T ss_dssp --HHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 3444444444444444
No 454
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=20.65 E-value=8.5e+02 Score=26.22 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCC-CCcceeecCcCC
Q 041524 330 DLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRP-NVCKYIHLPAQT 378 (524)
Q Consensus 330 ~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~-~G~~~i~igiES 378 (524)
++++.+.+.. ..++....-||..++++.++.++... .| |.++.||
T Consensus 207 ell~~Lk~~~-~~~v~~h~nhp~Eit~~a~~Al~~L~~aG---I~l~nQs 252 (417)
T TIGR03820 207 ELVAILKKHH-PVWLNTHFNHPREITASSKKALAKLADAG---IPLGNQS 252 (417)
T ss_pred HHHHHHHhcC-CeEEEEeCCChHhChHHHHHHHHHHHHcC---CEEEeec
Confidence 4555555443 35666666788888887777766531 14 4555555
No 455
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=20.62 E-value=2.7e+02 Score=27.53 Aligned_cols=52 Identities=21% Similarity=0.502 Sum_probs=28.3
Q ss_pred cCCCCCHHHHHH-HHHHHHHCC--Ceec-c---CCCCCCcEEEEeeccCcchHHHHHHHHHHHH
Q 041524 84 YGCQMNVNDMEI-VLSIMKNAG--YSEV-I---NVPENAEVIFINTCAIRDYAEHKVWQRLNYF 140 (524)
Q Consensus 84 ~GC~~N~~d~e~-i~~~L~~~G--y~~~-~---~~~~~aDvv~intc~v~~~a~~~~~~~l~~~ 140 (524)
.||.|++.|... +..+|.... |-.+ + +.|+ .||++| .-+|.+.- -...++++
T Consensus 15 ~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPE-vDValV-EGsV~~ee---~lE~v~El 73 (247)
T COG1941 15 SGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPE-VDVALV-EGSVCDEE---ELELVKEL 73 (247)
T ss_pred cchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCc-ccEEEE-ecccCcHH---HHHHHHHH
Confidence 499999999854 444554331 1111 1 1234 899988 45666433 34444444
No 456
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=20.40 E-value=7.4e+02 Score=24.88 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=57.2
Q ss_pred CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC----CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHH-H
Q 041524 354 FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR----GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEE-H 428 (524)
Q Consensus 354 ~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R----~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed-~ 428 (524)
.|.-..+++.++ |+.-+.+| +.-..-.++. ..|.++....++.+++..+.-.+.+|+=+|=.+.+.++ +
T Consensus 23 yD~~sArl~e~a--G~d~i~vG----ds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av 96 (264)
T PRK00311 23 YDYPFAKLFDEA--GVDVILVG----DSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQAL 96 (264)
T ss_pred CCHHHHHHHHHc--CCCEEEEC----HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHH
Confidence 466667777888 99988643 3333333443 24789999999888876443346677733434467776 6
Q ss_pred HHHHHHHHHcCCCeEEE
Q 041524 429 ADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 429 ~~tl~~l~~l~~d~~~i 445 (524)
+.+.+++++.+.+.+++
T Consensus 97 ~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKL 113 (264)
T ss_pred HHHHHHHHHhCCeEEEE
Confidence 77788888888876665
No 457
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.33 E-value=2.5e+02 Score=27.62 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCC--ee-ccCCC-----------CCCcEEEEeeccCcch---HHHHHHHHHHHHHHhhhhhhhccccc
Q 041524 92 DMEIVLSIMKNAGY--SE-VINVP-----------ENAEVIFINTCAIRDY---AEHKVWQRLNYFWFLKREWKKNVATG 154 (524)
Q Consensus 92 d~e~i~~~L~~~Gy--~~-~~~~~-----------~~aDvv~intc~v~~~---a~~~~~~~l~~~~~~~~~~~~~~~~~ 154 (524)
+...+...+++.|. .. ++-+| ...|.|+|.|--.-.. -...+.+++++++.+..
T Consensus 104 ~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~--------- 174 (228)
T PRK08091 104 DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLG--------- 174 (228)
T ss_pred cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHH---------
Confidence 46677788889887 32 12222 5899999966433221 12245667777655442
Q ss_pred ccccCCCCEEEE-EcccccccHHHHHhhCCcceEEECCCC
Q 041524 155 RSQSKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDA 193 (524)
Q Consensus 155 ~~~~~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~geg 193 (524)
++..+..|-| ||.-.+.. ..+.+ .++|++|.|-+
T Consensus 175 --~~~~~~~IeVDGGI~~~ti-~~l~~--aGaD~~V~GSa 209 (228)
T PRK08091 175 --NRRVEKLISIDGSMTLELA-SYLKQ--HQIDWVVSGSA 209 (228)
T ss_pred --hcCCCceEEEECCCCHHHH-HHHHH--CCCCEEEEChh
Confidence 2234566777 55555543 34443 47999988854
No 458
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=20.30 E-value=2.4e+02 Score=29.65 Aligned_cols=74 Identities=18% Similarity=0.364 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC-CCCEEEEEccc
Q 041524 92 DMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK-HPPKIVVLGCM 170 (524)
Q Consensus 92 d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-p~~~IvvgG~~ 170 (524)
+...-..+|+..|... ..+++|---||+=+.---+++.+.+++. .+.. .+.+|.|-||.
T Consensus 248 EV~va~~IL~al~lR~-----~g~~~ISCPtCGRt~~Dl~~~~~~ie~~---------------l~~l~~~lkIAVMGCi 307 (359)
T PF04551_consen 248 EVKVAFEILQALGLRK-----RGPEIISCPTCGRTEFDLQELVAEIEER---------------LKHLKKGLKIAVMGCI 307 (359)
T ss_dssp HHHHHHHHHHHTTSS------SS-EEEE----TT--SHHHHHHHHHHHH---------------CCCHHCG-EEEEESST
T ss_pred HHHHHHHHHHHhCcCc-----CCceeeeCCCCCCccchHHHHHHHHHHH---------------HhcCCCCceEEEEeee
Confidence 4567788999988753 5789999999997776666666665543 1111 47899999999
Q ss_pred ccccHHHHHhhCCcceEEEC
Q 041524 171 AERLKDKILDADKMVDVVCG 190 (524)
Q Consensus 171 at~~~e~~l~~~~~vD~Vv~ 190 (524)
+.- |-|. ..+|+-+.
T Consensus 308 VNG-PGEa----~~AD~Gia 322 (359)
T PF04551_consen 308 VNG-PGEA----KDADIGIA 322 (359)
T ss_dssp CCC-HHHC----TTSSEEEE
T ss_pred ecC-Cchh----hhCceeee
Confidence 997 5554 34677554
No 459
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=20.26 E-value=1.7e+03 Score=27.51 Aligned_cols=143 Identities=11% Similarity=0.056 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhhCCceEEEEecC----CCC--CCCH----HHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHH
Q 041524 327 RFADLLDRLSLEFPEMRFRYTSP----HPK--DFPD----ELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAY 396 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~~~ir~~s~----~p~--~~~~----elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~ 396 (524)
.+...++.+.+........+++. +|. ..+. ++.+.+.++ |+..|.|. -|---.+..++
T Consensus 653 n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~--Gad~I~ik----------Dt~Gll~P~~~ 720 (1143)
T TIGR01235 653 NMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA--GAHILGIK----------DMAGLLKPAAA 720 (1143)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc--CCCEEEEC----------CCcCCcCHHHH
Confidence 46666677766655444333332 221 1122 566677777 88888764 34444688999
Q ss_pred HHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCC--hhccc----CC-CCCCHHHH
Q 041524 397 LDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERT--HAHRN----YV-DDVPEEVK 469 (524)
Q Consensus 397 ~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT--~~~~~----~~-~~v~~~~k 469 (524)
.++++.+++.+ ++.+..+ ...|..--..+.-...+.+.+.+....-.+--+| |.... +. -.....+.
T Consensus 721 ~~Lv~~lk~~~-~~pi~~H-----~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~tgid 794 (1143)
T TIGR01235 721 KLLIKALREKT-DLPIHFH-----THDTSGIAVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERDPGLN 794 (1143)
T ss_pred HHHHHHHHHhc-CCeEEEE-----ECCCCCcHHHHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCCCCcC
Confidence 99999999875 4443332 2333333333333344668888776543332222 11110 11 12233345
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041524 470 QRRLTELIEAFRESTGQC 487 (524)
Q Consensus 470 ~~Rl~~l~~~~~~~~~~~ 487 (524)
.+++.++.+.+++....+
T Consensus 795 l~~l~~is~~~~~vr~~y 812 (1143)
T TIGR01235 795 VAWIRELSAYWEAVRNLY 812 (1143)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566777777666654333
No 460
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=20.25 E-value=6.1e+02 Score=25.50 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEeeecC
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG-YDMAYMFAYSMR 451 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~-~d~~~i~~~sp~ 451 (524)
..+.+++.+....+.. +.. +|+-+-|.+.+++.+..+.+++.+ +|.+.+...+|.
T Consensus 75 g~~~~~~~~~~~~~~~-~~p----~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~ 130 (301)
T PRK07259 75 GVDAFIEEELPWLEEF-DTP----IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPN 130 (301)
T ss_pred CHHHHHHHHHHHHhcc-CCc----EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCC
Confidence 4566776665544321 333 334444778999999999999988 999888776665
No 461
>PRK11173 two-component response regulator; Provisional
Probab=20.24 E-value=7.2e+02 Score=23.26 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeecc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCA 124 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~ 124 (524)
+..-.+.+...|...||++.. .+ ...+|+|++....
T Consensus 12 d~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l 57 (237)
T PRK11173 12 ELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINL 57 (237)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCCC
Confidence 455567788888888987521 11 1368999986543
No 462
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=20.08 E-value=4e+02 Score=27.53 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=25.0
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEec
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQ 288 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~ 288 (524)
...+++.+++|++.+.+.|++.|.|.+-
T Consensus 46 ~r~s~d~l~~~~~~~~~~Gi~~v~LFgv 73 (320)
T cd04824 46 NRYGVNRLEEFLRPLVAKGLRSVILFGV 73 (320)
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3568999999999999999999999875
Done!