Query 041524
Match_columns 524
No_of_seqs 449 out of 2609
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 100.0 9.6E-47 3.3E-51 383.6 28.4 260 233-522 3-262 (304)
2 1olt_A Oxygen-independent copr 99.9 1.2E-26 4.2E-31 248.2 18.7 228 233-499 52-292 (457)
3 3t7v_A Methylornithine synthas 99.9 1E-22 3.6E-27 210.4 23.9 187 235-458 62-249 (350)
4 3iix_A Biotin synthetase, puta 99.9 4.7E-22 1.6E-26 204.9 23.1 185 235-458 54-240 (348)
5 1r30_A Biotin synthase; SAM ra 99.9 9.2E-21 3.2E-25 197.2 24.8 195 234-469 65-266 (369)
6 1tv8_A MOAA, molybdenum cofact 99.7 4E-16 1.4E-20 160.2 22.2 199 234-473 14-220 (340)
7 3c8f_A Pyruvate formate-lyase 99.6 2.3E-14 7.8E-19 139.0 17.5 180 234-455 20-208 (245)
8 2yx0_A Radical SAM enzyme; pre 99.6 5.8E-14 2E-18 144.3 19.3 176 238-455 74-281 (342)
9 2a5h_A L-lysine 2,3-aminomutas 99.3 1E-10 3.4E-15 123.3 21.6 181 232-457 113-301 (416)
10 2z2u_A UPF0026 protein MJ0257; 99.3 1.1E-11 3.8E-16 125.3 13.5 175 234-455 51-259 (311)
11 3rfa_A Ribosomal RNA large sub 99.2 5.2E-10 1.8E-14 116.7 16.8 186 232-456 113-319 (404)
12 4fhd_A Spore photoproduct lyas 97.7 0.00035 1.2E-08 71.7 13.3 165 237-437 110-282 (368)
13 3can_A Pyruvate-formate lyase- 97.1 0.0094 3.2E-07 54.5 14.7 118 327-455 19-141 (182)
14 2yxb_A Coenzyme B12-dependent 96.7 0.018 6.1E-07 52.1 12.3 111 76-204 18-142 (161)
15 2cw6_A Hydroxymethylglutaryl-C 94.6 0.52 1.8E-05 46.6 14.3 147 261-446 22-176 (298)
16 1ydn_A Hydroxymethylglutaryl-C 94.3 0.89 3E-05 44.8 15.1 147 261-446 21-175 (295)
17 1ccw_A Protein (glutamate muta 93.5 0.51 1.8E-05 41.1 10.3 109 77-204 4-130 (137)
18 2ftp_A Hydroxymethylglutaryl-C 93.4 2.6 8.7E-05 41.7 16.7 148 261-446 25-179 (302)
19 1ydo_A HMG-COA lyase; TIM-barr 92.5 2.6 8.9E-05 41.8 15.1 147 261-446 23-177 (307)
20 2xij_A Methylmalonyl-COA mutas 92.3 1.1 3.6E-05 50.0 13.0 99 75-192 603-715 (762)
21 1req_A Methylmalonyl-COA mutas 92.3 0.64 2.2E-05 51.5 11.1 107 75-202 595-715 (727)
22 2i2x_B MTAC, methyltransferase 90.7 1.2 4E-05 43.1 10.1 107 76-205 123-242 (258)
23 1y80_A Predicted cobalamin bin 90.5 1.2 4.2E-05 41.3 9.8 95 76-189 88-195 (210)
24 3ble_A Citramalate synthase fr 85.8 7.7 0.00026 38.9 12.7 145 261-445 36-188 (337)
25 3ewb_X 2-isopropylmalate synth 85.3 8.3 0.00028 37.8 12.4 144 261-445 22-169 (293)
26 1nvm_A HOA, 4-hydroxy-2-oxoval 84.3 10 0.00036 38.0 12.9 143 261-445 25-168 (345)
27 3f6c_A Positive transcription 83.7 12 0.00041 30.5 11.3 101 89-209 10-122 (134)
28 4e38_A Keto-hydroxyglutarate-a 83.7 9.7 0.00033 36.1 11.6 83 260-386 40-122 (232)
29 3ezx_A MMCP 1, monomethylamine 83.4 1.5 5.2E-05 41.2 5.8 64 93-172 109-188 (215)
30 3ivs_A Homocitrate synthase, m 82.7 21 0.00071 36.9 14.5 142 261-445 56-199 (423)
31 2qxy_A Response regulator; reg 82.1 8.6 0.0003 31.9 9.8 99 89-208 13-122 (142)
32 3bul_A Methionine synthase; tr 81.8 6.5 0.00022 42.5 10.7 98 76-190 98-210 (579)
33 3inp_A D-ribulose-phosphate 3- 81.1 17 0.00058 34.7 12.3 134 260-456 34-171 (246)
34 1aj0_A DHPS, dihydropteroate s 79.9 19 0.00065 35.1 12.5 146 261-438 33-207 (282)
35 3eod_A Protein HNR; response r 77.0 15 0.0005 29.9 9.4 99 89-207 16-126 (130)
36 1xrs_B D-lysine 5,6-aminomutas 76.9 3 0.0001 40.4 5.5 107 76-203 120-251 (262)
37 3kp1_A D-ornithine aminomutase 76.8 3 0.0001 45.2 5.9 105 76-204 602-729 (763)
38 3eeg_A 2-isopropylmalate synth 76.4 15 0.0005 36.6 10.7 145 261-445 23-170 (325)
39 3jte_A Response regulator rece 76.2 22 0.00074 29.3 10.5 98 89-206 12-122 (143)
40 3lua_A Response regulator rece 75.7 30 0.001 28.4 11.2 103 89-208 13-128 (140)
41 2ztj_A Homocitrate synthase; ( 75.1 26 0.00088 35.6 12.4 138 261-445 20-163 (382)
42 3lmz_A Putative sugar isomeras 75.1 22 0.00077 33.2 11.3 77 356-446 33-109 (257)
43 3lte_A Response regulator; str 74.8 24 0.00082 28.5 10.2 101 89-207 15-125 (132)
44 3hdv_A Response regulator; PSI 74.6 25 0.00086 28.6 10.4 101 89-208 16-128 (136)
45 3h5i_A Response regulator/sens 74.0 20 0.00067 29.7 9.6 96 89-204 14-121 (140)
46 1rqb_A Transcarboxylase 5S sub 73.7 31 0.0011 36.8 12.9 141 262-445 43-194 (539)
47 1eye_A DHPS 1, dihydropteroate 73.6 30 0.001 33.6 11.9 145 261-438 24-199 (280)
48 2nx9_A Oxaloacetate decarboxyl 73.4 31 0.0011 36.1 12.6 140 262-445 26-177 (464)
49 3kto_A Response regulator rece 72.9 16 0.00053 30.2 8.6 100 89-207 15-126 (136)
50 1qkk_A DCTD, C4-dicarboxylate 72.8 24 0.00083 29.6 10.0 98 89-206 12-120 (155)
51 1dbw_A Transcriptional regulat 72.3 35 0.0012 27.3 10.6 96 90-205 13-119 (126)
52 2qr3_A Two-component system re 71.7 22 0.00074 29.1 9.2 101 89-208 12-127 (140)
53 4dad_A Putative pilus assembly 71.4 33 0.0011 28.3 10.5 108 76-207 20-141 (146)
54 3vni_A Xylose isomerase domain 70.8 57 0.002 30.8 13.3 75 356-445 20-107 (294)
55 2yci_X 5-methyltetrahydrofolat 70.8 36 0.0012 32.9 11.6 140 261-439 29-193 (271)
56 1tqj_A Ribulose-phosphate 3-ep 70.6 21 0.00073 33.4 9.8 134 262-456 13-149 (230)
57 3gt7_A Sensor protein; structu 70.3 21 0.00071 30.2 9.0 101 89-207 16-127 (154)
58 3rmj_A 2-isopropylmalate synth 70.1 32 0.0011 34.8 11.6 145 261-445 29-176 (370)
59 3ovp_A Ribulose-phosphate 3-ep 69.8 19 0.00064 33.9 9.2 132 261-455 12-148 (228)
60 3ctl_A D-allulose-6-phosphate 69.4 33 0.0011 32.3 10.8 132 261-455 8-142 (231)
61 3crn_A Response regulator rece 69.3 40 0.0014 27.3 10.4 96 89-204 12-118 (132)
62 3gl9_A Response regulator; bet 68.9 35 0.0012 27.3 9.8 97 89-203 11-118 (122)
63 3hv2_A Response regulator/HD d 68.3 34 0.0012 28.7 9.9 105 77-205 15-131 (153)
64 1vhc_A Putative KHG/KDPG aldol 67.9 78 0.0027 29.4 13.5 81 261-385 24-104 (224)
65 1ydn_A Hydroxymethylglutaryl-C 67.8 90 0.0031 30.1 20.6 143 234-438 136-281 (295)
66 3hzh_A Chemotaxis response reg 67.7 28 0.00097 29.4 9.4 103 77-203 37-153 (157)
67 3cz5_A Two-component response 67.5 40 0.0014 28.1 10.3 101 89-209 14-127 (153)
68 1srr_A SPO0F, sporulation resp 67.2 32 0.0011 27.4 9.2 97 89-205 12-119 (124)
69 2dqw_A Dihydropteroate synthas 66.9 39 0.0013 33.1 11.0 147 261-438 47-219 (294)
70 4e7p_A Response regulator; DNA 66.8 46 0.0016 27.7 10.5 108 77-208 21-141 (150)
71 3eul_A Possible nitrate/nitrit 66.7 32 0.0011 28.7 9.4 109 77-209 16-137 (152)
72 3hdg_A Uncharacterized protein 66.6 17 0.00056 29.8 7.4 99 89-207 16-125 (137)
73 1tmy_A CHEY protein, TMY; chem 66.5 45 0.0016 26.2 10.2 94 89-202 11-116 (120)
74 2gkg_A Response regulator homo 65.9 34 0.0012 27.1 9.1 99 89-204 14-122 (127)
75 2ftp_A Hydroxymethylglutaryl-C 65.5 1E+02 0.0035 29.9 14.4 97 234-377 140-237 (302)
76 2rjn_A Response regulator rece 65.4 47 0.0016 27.7 10.3 97 89-205 16-124 (154)
77 3snk_A Response regulator CHEY 65.0 17 0.00057 29.8 7.1 96 89-204 23-130 (135)
78 3cg0_A Response regulator rece 64.7 25 0.00086 28.7 8.2 97 89-205 18-126 (140)
79 2y5s_A DHPS, dihydropteroate s 64.7 34 0.0012 33.5 10.1 148 261-439 41-217 (294)
80 3grc_A Sensor protein, kinase; 64.1 20 0.00069 29.4 7.5 99 89-205 15-125 (140)
81 1mxs_A KDPG aldolase; 2-keto-3 64.1 83 0.0029 29.3 12.4 82 261-386 33-114 (225)
82 2vp8_A Dihydropteroate synthas 63.9 28 0.00094 34.6 9.4 145 261-438 60-239 (318)
83 3cnb_A DNA-binding response re 63.8 57 0.002 26.4 10.6 101 89-207 17-130 (143)
84 3f6p_A Transcriptional regulat 63.6 54 0.0018 26.0 10.5 95 89-203 11-115 (120)
85 1mb3_A Cell division response 63.6 44 0.0015 26.4 9.4 99 89-205 10-119 (124)
86 3l5o_A Uncharacterized protein 63.3 4 0.00014 39.7 3.0 71 113-208 185-255 (270)
87 3t6k_A Response regulator rece 63.0 41 0.0014 27.5 9.3 100 89-206 13-123 (136)
88 1mvo_A PHOP response regulator 62.5 59 0.002 26.1 10.2 98 89-206 12-120 (136)
89 2rdm_A Response regulator rece 61.0 62 0.0021 25.8 11.0 99 89-208 14-124 (132)
90 2f6u_A GGGPS, (S)-3-O-geranylg 60.6 16 0.00055 34.6 6.7 100 346-458 12-138 (234)
91 3kht_A Response regulator; PSI 60.3 56 0.0019 26.8 9.7 98 89-204 14-125 (144)
92 1tx2_A DHPS, dihydropteroate s 59.9 68 0.0023 31.4 11.3 143 262-438 59-226 (297)
93 3i42_A Response regulator rece 59.8 38 0.0013 27.1 8.3 96 89-203 12-118 (127)
94 3cfy_A Putative LUXO repressor 59.7 29 0.001 28.5 7.7 95 91-205 15-120 (137)
95 2cw6_A Hydroxymethylglutaryl-C 59.3 1.2E+02 0.0041 29.3 13.2 80 263-377 153-234 (298)
96 3npg_A Uncharacterized DUF364 58.8 4.5 0.00015 38.8 2.5 71 114-208 164-234 (249)
97 1req_B Methylmalonyl-COA mutas 58.5 20 0.00069 39.0 7.8 105 76-204 509-629 (637)
98 3h1g_A Chemotaxis protein CHEY 57.6 54 0.0018 26.4 9.0 99 89-205 14-125 (129)
99 3m6m_D Sensory/regulatory prot 57.5 63 0.0022 26.6 9.6 101 89-205 23-134 (143)
100 3c3m_A Response regulator rece 56.9 78 0.0027 25.7 10.3 99 89-206 12-122 (138)
101 3lab_A Putative KDPG (2-keto-3 56.0 1.3E+02 0.0044 28.0 12.0 83 260-386 19-101 (217)
102 3vnd_A TSA, tryptophan synthas 56.0 23 0.00077 34.3 7.0 78 327-406 4-92 (267)
103 2h1q_A Hypothetical protein; Z 55.9 6.2 0.00021 38.4 3.0 71 113-208 185-255 (270)
104 1ydo_A HMG-COA lyase; TIM-barr 55.9 95 0.0032 30.3 11.7 97 234-377 138-235 (307)
105 3p6l_A Sugar phosphate isomera 55.7 69 0.0024 29.7 10.5 100 341-446 9-111 (262)
106 3cg4_A Response regulator rece 55.2 44 0.0015 27.2 8.1 98 89-204 16-124 (142)
107 1wbh_A KHG/KDPG aldolase; lyas 54.9 1.3E+02 0.0044 27.6 13.6 81 261-385 23-103 (214)
108 2j48_A Two-component sensor ki 54.8 38 0.0013 26.2 7.3 36 89-124 10-55 (119)
109 3heb_A Response regulator rece 54.7 79 0.0027 26.1 9.8 98 89-204 13-132 (152)
110 3a10_A Response regulator; pho 54.7 73 0.0025 24.7 9.5 92 89-202 10-112 (116)
111 2pln_A HP1043, response regula 54.6 83 0.0028 25.4 10.2 101 76-205 18-131 (137)
112 2pl1_A Transcriptional regulat 54.5 75 0.0026 24.8 10.1 94 90-203 10-114 (121)
113 3nhm_A Response regulator; pro 54.4 57 0.0019 26.2 8.6 99 89-206 13-121 (133)
114 2xwp_A Sirohydrochlorin cobalt 53.4 35 0.0012 32.5 7.9 60 394-460 153-212 (264)
115 1yio_A Response regulatory pro 52.7 59 0.002 28.7 9.0 96 89-204 13-119 (208)
116 2ekc_A AQ_1548, tryptophan syn 52.1 1.2E+02 0.004 28.8 11.4 83 356-442 34-150 (262)
117 3eqz_A Response regulator; str 51.0 83 0.0028 25.1 9.1 101 89-208 12-126 (135)
118 1kgs_A DRRD, DNA binding respo 50.7 62 0.0021 28.9 9.0 98 89-206 11-119 (225)
119 1zgz_A Torcad operon transcrip 50.5 89 0.003 24.5 9.6 93 89-202 11-114 (122)
120 1jvn_A Glutamine, bifunctional 50.4 1.3E+02 0.0043 32.1 12.5 97 267-412 453-550 (555)
121 2a9o_A Response regulator; ess 50.0 88 0.003 24.3 9.2 95 89-204 10-115 (120)
122 3qc0_A Sugar isomerase; TIM ba 50.0 1.1E+02 0.0039 28.1 11.0 77 355-447 20-104 (275)
123 1k68_A Phytochrome response re 48.8 90 0.0031 24.9 9.0 98 89-204 11-128 (140)
124 2zay_A Response regulator rece 48.5 37 0.0013 28.0 6.5 97 90-204 18-125 (147)
125 2jba_A Phosphate regulon trans 48.3 64 0.0022 25.5 7.9 97 90-204 12-119 (127)
126 2qzj_A Two-component response 48.1 94 0.0032 25.2 9.0 96 89-204 13-118 (136)
127 3cqj_A L-ribulose-5-phosphate 47.7 1.8E+02 0.0062 27.2 13.1 85 355-446 32-128 (295)
128 2hk0_A D-psicose 3-epimerase; 47.5 1.9E+02 0.0065 27.4 12.6 74 356-445 40-126 (309)
129 3b2n_A Uncharacterized protein 47.3 1E+02 0.0034 24.8 9.0 99 89-207 12-123 (133)
130 2qsj_A DNA-binding response re 46.2 61 0.0021 26.9 7.7 101 89-209 12-126 (154)
131 3to5_A CHEY homolog; alpha(5)b 46.2 1.3E+02 0.0043 25.4 9.6 95 89-201 21-127 (134)
132 3tr9_A Dihydropteroate synthas 46.0 2.3E+02 0.0078 27.9 13.4 146 261-435 44-221 (314)
133 1f6y_A 5-methyltetrahydrofolat 45.6 1.6E+02 0.0055 28.0 11.2 138 261-438 20-183 (262)
134 1xhf_A DYE resistance, aerobic 45.3 1.1E+02 0.0037 23.9 9.9 94 89-203 12-116 (123)
135 1jbe_A Chemotaxis protein CHEY 44.9 1.1E+02 0.0038 24.0 10.2 97 89-203 13-121 (128)
136 1vzw_A Phosphoribosyl isomeras 44.6 1.4E+02 0.0047 27.5 10.5 131 267-449 33-169 (244)
137 3r0j_A Possible two component 44.1 1.1E+02 0.0039 27.9 9.8 106 76-205 23-139 (250)
138 1ys7_A Transcriptional regulat 43.6 72 0.0025 28.7 8.2 98 89-206 16-124 (233)
139 3tva_A Xylose isomerase domain 43.4 38 0.0013 32.1 6.4 78 356-446 24-122 (290)
140 4i6k_A Amidohydrolase family p 43.2 2.2E+02 0.0076 27.0 14.1 102 262-412 52-153 (294)
141 1rqb_A Transcarboxylase 5S sub 42.8 2.6E+02 0.0089 29.6 13.2 122 264-438 173-296 (539)
142 3klo_A Transcriptional regulat 42.8 1.5E+02 0.0052 26.5 10.3 100 90-208 17-130 (225)
143 3bdk_A D-mannonate dehydratase 42.1 89 0.003 31.7 9.2 86 354-450 31-127 (386)
144 3kcn_A Adenylate cyclase homol 41.8 1.3E+02 0.0043 24.8 9.0 96 89-205 13-121 (151)
145 1qo0_D AMIR; binding protein, 41.6 1.5E+02 0.005 25.8 9.8 95 89-204 21-122 (196)
146 1zh2_A KDP operon transcriptio 41.3 78 0.0027 24.6 7.2 95 89-204 10-115 (121)
147 1k66_A Phytochrome response re 41.1 1E+02 0.0035 24.9 8.2 98 89-204 15-135 (149)
148 3rqi_A Response regulator prot 41.0 57 0.002 28.4 6.8 93 89-204 16-119 (184)
149 3q9s_A DNA-binding response re 40.4 1.3E+02 0.0044 27.7 9.6 99 89-208 46-155 (249)
150 1p6q_A CHEY2; chemotaxis, sign 39.7 1.3E+02 0.0043 23.8 8.4 97 89-203 15-123 (129)
151 2qul_A D-tagatose 3-epimerase; 39.6 2.3E+02 0.008 26.2 15.5 80 356-448 20-110 (290)
152 2qw5_A Xylose isomerase-like T 39.2 2E+02 0.0067 27.7 11.1 76 357-443 35-126 (335)
153 2nx9_A Oxaloacetate decarboxyl 39.1 3.5E+02 0.012 28.0 14.0 121 264-438 156-277 (464)
154 1hjs_A Beta-1,4-galactanase; 4 38.1 32 0.0011 34.2 5.0 53 356-418 30-82 (332)
155 2gwr_A DNA-binding response re 38.0 1.3E+02 0.0045 27.2 9.1 98 89-207 14-122 (238)
156 2y7e_A 3-keto-5-aminohexanoate 37.6 1.6E+02 0.0055 28.5 9.8 75 261-362 29-104 (282)
157 2bdq_A Copper homeostasis prot 37.4 2.2E+02 0.0076 26.5 10.3 143 263-458 73-219 (224)
158 1s8n_A Putative antiterminator 37.3 1.2E+02 0.004 26.6 8.5 96 89-204 22-128 (205)
159 2y88_A Phosphoribosyl isomeras 37.3 1.4E+02 0.0047 27.4 9.2 129 267-447 32-170 (244)
160 3no5_A Uncharacterized protein 37.0 2.9E+02 0.0099 26.5 14.0 152 260-441 24-199 (275)
161 3ilh_A Two component response 36.9 1.6E+02 0.0055 23.6 11.0 103 89-207 18-139 (146)
162 2q02_A Putative cytoplasmic pr 36.6 1.5E+02 0.005 27.3 9.4 80 356-446 22-105 (272)
163 2qvg_A Two component response 34.8 1.7E+02 0.006 23.4 8.7 96 89-202 16-130 (143)
164 3bg3_A Pyruvate carboxylase, m 34.7 4.3E+02 0.015 29.0 13.8 75 355-445 199-280 (718)
165 2ayx_A Sensor kinase protein R 34.5 1.4E+02 0.0047 27.7 8.8 104 77-204 130-244 (254)
166 2vef_A Dihydropteroate synthas 33.7 2E+02 0.0068 28.2 10.0 150 261-438 28-223 (314)
167 3tc3_A UV damage endonuclease; 33.2 2.4E+02 0.0082 27.7 10.3 155 265-453 59-258 (310)
168 1viz_A PCRB protein homolog; s 33.1 1.9E+02 0.0064 27.2 9.3 98 346-458 12-131 (240)
169 1yg6_A ATP-dependent CLP prote 32.9 74 0.0025 28.7 6.3 69 83-173 30-98 (193)
170 1i60_A IOLI protein; beta barr 32.8 2.9E+02 0.0098 25.2 13.6 80 355-446 16-104 (278)
171 3nav_A Tryptophan synthase alp 32.6 95 0.0033 29.8 7.2 83 327-411 6-99 (271)
172 3mcm_A 2-amino-4-hydroxy-6-hyd 32.5 1.4E+02 0.0049 30.8 9.0 140 263-432 209-382 (442)
173 4hb7_A Dihydropteroate synthas 32.2 3.4E+02 0.012 26.0 12.0 138 261-432 25-186 (270)
174 1qop_A Tryptophan synthase alp 31.5 1.1E+02 0.0037 29.1 7.5 50 356-407 34-92 (268)
175 2oqr_A Sensory transduction pr 31.2 1E+02 0.0035 27.6 7.1 98 89-207 13-121 (230)
176 1a04_A Nitrate/nitrite respons 30.6 2.3E+02 0.0078 24.8 9.3 98 91-208 16-126 (215)
177 3rr1_A GALD, putative D-galact 30.4 2.9E+02 0.01 27.9 11.0 26 263-288 124-149 (405)
178 3inp_A D-ribulose-phosphate 3- 30.4 70 0.0024 30.3 5.8 96 79-192 113-224 (246)
179 2hqr_A Putative transcriptiona 30.3 2.2E+02 0.0076 25.1 9.2 93 91-208 11-116 (223)
180 3fwz_A Inner membrane protein 29.7 2.3E+02 0.0078 23.4 8.6 31 159-192 96-126 (140)
181 3n9k_A Glucan 1,3-beta-glucosi 29.6 2.8E+02 0.0095 28.0 10.6 61 354-422 74-138 (399)
182 2yw3_A 4-hydroxy-2-oxoglutarat 29.3 3.2E+02 0.011 24.7 11.5 71 261-375 20-90 (207)
183 3vni_A Xylose isomerase domain 29.3 3.5E+02 0.012 25.1 15.0 78 358-444 93-180 (294)
184 2d0j_A Galactosylgalactosylxyl 29.2 1.5E+02 0.005 28.2 7.7 76 326-407 19-94 (246)
185 1fob_A Beta-1,4-galactanase; B 29.2 71 0.0024 31.5 5.9 54 355-418 29-82 (334)
186 3chv_A Prokaryotic domain of u 29.1 1.6E+02 0.0054 28.5 8.1 61 261-348 29-89 (284)
187 3kws_A Putative sugar isomeras 28.8 3.5E+02 0.012 25.0 11.8 87 342-446 26-124 (287)
188 2x7v_A Probable endonuclease 4 28.7 3.3E+02 0.011 25.1 10.5 85 355-447 14-110 (287)
189 1ur4_A Galactanase; hydrolase, 28.5 4.7E+02 0.016 26.4 17.6 84 357-448 145-234 (399)
190 3obk_A Delta-aminolevulinic ac 28.3 1.4E+02 0.0049 29.6 7.6 50 234-288 46-95 (356)
191 1hg3_A Triosephosphate isomera 27.8 3E+02 0.01 25.5 9.6 98 88-204 101-221 (225)
192 1j93_A UROD, uroporphyrinogen 27.7 1.4E+02 0.0047 29.4 7.8 104 327-438 232-351 (353)
193 3l23_A Sugar phosphate isomera 27.2 1E+02 0.0036 29.5 6.6 76 356-445 32-127 (303)
194 3ble_A Citramalate synthase fr 27.0 2.6E+02 0.0088 27.5 9.6 123 263-438 166-290 (337)
195 3dx5_A Uncharacterized protein 27.0 2.2E+02 0.0074 26.4 8.8 83 355-447 17-105 (286)
196 3lot_A Uncharacterized protein 27.0 4.5E+02 0.015 25.7 13.0 63 260-349 26-88 (314)
197 3apt_A Methylenetetrahydrofola 27.0 3.8E+02 0.013 26.0 10.7 121 261-420 81-208 (310)
198 1ny5_A Transcriptional regulat 26.9 2.8E+02 0.0096 27.6 10.1 94 90-203 10-114 (387)
199 1yx1_A Hypothetical protein PA 26.7 76 0.0026 29.5 5.4 78 356-448 26-106 (264)
200 2r25_B Osmosensing histidine p 26.3 2.5E+02 0.0084 22.4 10.3 97 89-204 11-124 (133)
201 2cby_A ATP-dependent CLP prote 26.2 1.2E+02 0.0042 27.6 6.6 70 82-173 30-99 (208)
202 1gcy_A Glucan 1,4-alpha-maltot 26.1 87 0.003 32.9 6.2 31 391-423 90-120 (527)
203 3ctl_A D-allulose-6-phosphate 25.8 95 0.0033 29.0 5.8 86 93-191 95-195 (231)
204 2b4a_A BH3024; flavodoxin-like 25.8 1.7E+02 0.0059 23.4 7.0 103 75-204 14-128 (138)
205 4fo4_A Inosine 5'-monophosphat 25.8 1.1E+02 0.0037 30.8 6.5 59 113-191 119-177 (366)
206 1h4p_A Glucan 1,3-beta-glucosi 25.0 1.4E+02 0.0046 30.4 7.2 61 354-418 74-136 (408)
207 2f6i_A ATP-dependent CLP prote 25.0 1.2E+02 0.004 28.0 6.2 70 81-173 41-110 (215)
208 1v84_A Galactosylgalactosylxyl 24.8 1.9E+02 0.0065 27.5 7.6 76 326-407 19-100 (253)
209 2qv0_A Protein MRKE; structura 24.6 2.7E+02 0.0092 22.2 8.7 95 89-205 18-125 (143)
210 3usb_A Inosine-5'-monophosphat 24.2 5.1E+02 0.017 27.0 11.8 129 267-445 256-387 (511)
211 3ngf_A AP endonuclease, family 24.0 4.2E+02 0.014 24.2 10.3 73 356-446 26-113 (269)
212 3c97_A Signal transduction his 23.8 2.2E+02 0.0076 22.8 7.3 102 89-208 19-131 (140)
213 3cu2_A Ribulose-5-phosphate 3- 23.6 87 0.003 29.5 5.0 70 113-193 147-219 (237)
214 1y7o_A ATP-dependent CLP prote 23.4 1.3E+02 0.0045 27.7 6.2 68 84-173 50-117 (218)
215 3dzd_A Transcriptional regulat 23.4 2.8E+02 0.0095 27.5 9.2 94 91-204 11-115 (368)
216 2bmb_A Folic acid synthesis pr 23.3 6.8E+02 0.023 26.4 13.9 148 264-439 247-459 (545)
217 1h5y_A HISF; histidine biosynt 22.9 1.9E+02 0.0064 26.3 7.3 78 264-377 31-108 (253)
218 1tg6_A Putative ATP-dependent 22.9 1.4E+02 0.0046 28.9 6.3 71 81-173 84-154 (277)
219 3ngf_A AP endonuclease, family 22.8 2E+02 0.007 26.5 7.7 24 261-287 21-44 (269)
220 1w0m_A TIM, triosephosphate is 22.6 2.3E+02 0.008 26.3 7.8 98 88-204 98-218 (226)
221 4e5v_A Putative THUA-like prot 22.4 1.9E+02 0.0066 27.7 7.4 48 78-125 6-69 (281)
222 3qwd_A ATP-dependent CLP prote 22.2 1.7E+02 0.0058 26.7 6.6 71 81-173 29-99 (203)
223 3cuq_A Vacuolar-sorting protei 22.2 1.1E+02 0.0039 28.7 5.5 48 390-437 114-165 (234)
224 1u1j_A 5-methyltetrahydroptero 22.2 8.1E+02 0.028 26.9 20.8 124 341-484 235-369 (765)
225 2plj_A Lysine/ornithine decarb 21.9 6.1E+02 0.021 25.4 12.5 56 355-413 152-209 (419)
226 3gwq_A D-serine deaminase; str 21.7 6.3E+02 0.021 25.5 13.2 58 355-420 149-213 (426)
227 2whl_A Beta-mannanase, baman5; 21.5 2.8E+02 0.0097 26.1 8.5 73 355-438 33-106 (294)
228 3bg3_A Pyruvate carboxylase, m 21.4 5.6E+02 0.019 28.1 11.6 83 263-379 258-341 (718)
229 2xvy_A Chelatase, putative; me 21.4 1.8E+02 0.0062 27.3 7.0 58 392-454 24-93 (269)
230 1k77_A EC1530, hypothetical pr 21.3 4.5E+02 0.015 23.6 9.9 74 355-446 17-105 (260)
231 1h1y_A D-ribulose-5-phosphate 21.2 54 0.0018 30.3 3.0 30 161-193 173-203 (228)
232 2dy3_A Alanine racemase; alpha 21.2 5.7E+02 0.02 24.8 12.4 51 355-413 102-153 (361)
233 3lpe_B DNA-directed RNA polyme 21.1 22 0.00074 26.2 0.1 28 238-266 10-37 (59)
234 3qxb_A Putative xylose isomera 21.0 3E+02 0.01 26.1 8.7 81 356-444 38-132 (316)
235 3n53_A Response regulator rece 20.9 1.5E+02 0.0051 23.8 5.6 99 90-207 13-122 (140)
236 1ccw_A Protein (glutamate muta 20.9 79 0.0027 26.8 3.8 82 355-458 43-125 (137)
237 4gm2_A ATP-dependent CLP prote 20.8 1.6E+02 0.0055 27.0 6.1 68 84-173 33-110 (205)
238 1tqj_A Ribulose-phosphate 3-ep 20.7 98 0.0034 28.7 4.8 88 93-193 101-203 (230)
239 3f4w_A Putative hexulose 6 pho 20.7 2.4E+02 0.0083 25.0 7.5 67 356-445 67-133 (211)
240 1dz3_A Stage 0 sporulation pro 20.5 3.1E+02 0.011 21.4 11.4 99 89-206 11-122 (130)
241 2h6r_A Triosephosphate isomera 20.2 2.3E+02 0.0078 25.9 7.2 95 80-193 84-201 (219)
242 2r91_A 2-keto-3-deoxy-(6-phosp 20.1 4.6E+02 0.016 24.8 9.7 45 392-442 49-93 (286)
243 4af0_A Inosine-5'-monophosphat 20.1 3.8E+02 0.013 28.5 9.4 109 266-415 280-390 (556)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=100.00 E-value=9.6e-47 Score=383.64 Aligned_cols=260 Identities=33% Similarity=0.506 Sum_probs=215.6
Q ss_pred CeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
..++||++++||+++|+||.+|..+|++|++++++|++|++.+.+.|+++|.|+|++++.| |.+.
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~y------------G~~~--- 67 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSY------------GIDL--- 67 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGT------------THHH---
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEccccc------------CCCC---
Confidence 4689999999999999999999999999999999999999999999999999999999988 3211
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT 392 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t 392 (524)
+....+.+|++.+.+..+..|+++.+.+|..+++++++.|+++++.|.++++|+||+|+++|++|+|+++
T Consensus 68 ----------~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t 137 (304)
T 2qgq_A 68 ----------YRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKS 137 (304)
T ss_dssp ----------HSSCCHHHHHHHHHTSSSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSC
T ss_pred ----------CcHHHHHHHHHHHHhcCCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCC
Confidence 0124689999999886555588888899999999999999999323999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCCHHHHHHH
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVKQRR 472 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k~~R 472 (524)
.+++.++++.+++.+||+.+.++||+||||||++++++|++++.+++++.+++|+|+|+|||+++. +.+++|++++++|
T Consensus 138 ~e~~~~~i~~l~~~~~gi~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~-~~~~v~~~~~~~r 216 (304)
T 2qgq_A 138 SEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFN-LKEKVDPEMAKRR 216 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHh-CcCCCCHHHHHHH
Confidence 999999999999988899999999999999999999999999999999999999999999999996 7789999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCEEEEEEeccCCCCCCCeEEEeCCCCcEE
Q 041524 473 LTELIEAFRESTGQCYDSQVGTVQLVLVEGPNKKAPDTELVGKSDRGHRV 522 (524)
Q Consensus 473 l~~l~~~~~~~~~~~~~~~vG~~~~vLve~~~~~~~~~~~~Gr~~~~~~v 522 (524)
++++.++++++..++++.++|+++.||||+.+ + +.+.||+++|.+|
T Consensus 217 ~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~---~-~~~~g~~~~~~~~ 262 (304)
T 2qgq_A 217 QEELLLLQAEISNSRLDRFVGKKLKFLVEGKE---G-KFLVGRTWTEAPE 262 (304)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCEEEEEEEEEE---T-TEEEEEETTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEEecC---C-CEEEEECCCCcEe
Confidence 99999999999999999999999999999862 2 3789999999987
No 2
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.94 E-value=1.2e-26 Score=248.21 Aligned_cols=228 Identities=19% Similarity=0.250 Sum_probs=179.1
Q ss_pred CeEEEEEEcccCCccCcccccCCCCC---ccccCChHHHHHHHHHHHHC----CCcEEEEEeccCCCCCCccCCccccCC
Q 041524 233 SVTAFVSVMRGCNNMCSFCIVPFTRG---RERSRPVESIVKEVDELWKE----GVKEVTLLGQNVNSYNDTSGMEKEVEP 305 (524)
Q Consensus 233 ~~~a~v~isRGC~~~CsFC~vp~~~G---~~Rsr~~e~Iv~Ei~~l~~~----G~kei~l~d~n~~~y~~~~~~~~~~~~ 305 (524)
....||.+. +|+++|+||.++...+ ..+.++++.|++||+.+.+. ++..|.|.|.+.+..
T Consensus 52 ~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l------------ 118 (457)
T 1olt_A 52 PLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYL------------ 118 (457)
T ss_dssp CEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGS------------
T ss_pred ceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccC------------
Confidence 467899997 6999999999875432 24567899999999988764 356777777554322
Q ss_pred CCccccccCcccchhcccchhhHHHHHHHHHhhCC---ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH
Q 041524 306 GANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP---EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA 382 (524)
Q Consensus 306 g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~---~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~ 382 (524)
....+.+|++.+.+..+ ..++++. .+|+.++++.++.|+++ |+++|++|+||++++
T Consensus 119 ------------------~~~~l~~ll~~i~~~~~~~~~~eitie-~~p~~l~~e~l~~L~~~--G~~rislGvQS~~~~ 177 (457)
T 1olt_A 119 ------------------NKAQISRLMKLLRENFQFNADAEISIE-VDPREIELDVLDHLRAE--GFNRLSMGVQDFNKE 177 (457)
T ss_dssp ------------------CHHHHHHHHHHHHHHSCEEEEEEEEEE-ECSSSCCTHHHHHHHHT--TCCEEEEEEECCCHH
T ss_pred ------------------CHHHHHHHHHHHHHhCCCCCCcEEEEE-EccCcCCHHHHHHHHHc--CCCEEEEeeccCCHH
Confidence 02468889999887543 3466664 69999999999999999 999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccC-
Q 041524 383 VLERMRRGYTREAYLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNY- 460 (524)
Q Consensus 383 vL~~m~R~~t~e~~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~- 460 (524)
+|+.|+|+++.+++.++++.++++ |+. ++.|+|+|+||||.+++.+|++++.+++++++++|.|++.|||++++++
T Consensus 178 ~l~~i~R~~~~~~~~~ai~~~r~~--G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~ 255 (457)
T 1olt_A 178 VQRLVNREQDEEFIFALLNHAREI--GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKI 255 (457)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHT--TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGS
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHc--CCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhcc
Confidence 999999999999999999999999 997 9999999999999999999999999999999999999999999988644
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEE
Q 041524 461 -VDDVPEEVKQRRLTELIEAFRESTGQCYDSQVGTVQLVL 499 (524)
Q Consensus 461 -~~~v~~~~k~~Rl~~l~~~~~~~~~~~~~~~vG~~~~vL 499 (524)
...+|.. .++++.+..+.+.+....+. .++-...++
T Consensus 256 ~~~~lp~~--~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 292 (457)
T 1olt_A 256 KDADLPSP--QQKLDILQETIAFLTQSGYQ-FIGMDHFAR 292 (457)
T ss_dssp CGGGSCCH--HHHHHHHHHHHHHHHHTTCE-EEETTEEEC
T ss_pred ccCCCcCH--HHHHHHHHHHHHHHHHCCCe-EEEechhcC
Confidence 2234433 34444444444444433332 444444444
No 3
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.90 E-value=1e-22 Score=210.35 Aligned_cols=187 Identities=19% Similarity=0.261 Sum_probs=159.6
Q ss_pred EEEEEEcccCCccCcccccCCCCCcc-ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGRE-RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~~-Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
.+.|.+++||+++|.||.++...+.. ...++++|+++++.+.+.|+++|.|++.....+.
T Consensus 62 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~------------------- 122 (350)
T 3t7v_A 62 NCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYY------------------- 122 (350)
T ss_dssp EEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHH-------------------
T ss_pred EEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccc-------------------
Confidence 46789999999999999987654322 2379999999999999999999999874422110
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR 393 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~ 393 (524)
.....+.++++.+.+..+ +.+.+ ++..++++.++.|+++ |+.++.+|+||+++++++.|+++++.
T Consensus 123 ---------~~~~~~~~l~~~ik~~~~-i~i~~---s~g~~~~e~l~~L~~a--G~~~i~i~lEt~~~~~~~~i~~~~~~ 187 (350)
T 3t7v_A 123 ---------EDPNRFVELVQIVKEELG-LPIMI---SPGLMDNATLLKAREK--GANFLALYQETYDTELYRKLRVGQSF 187 (350)
T ss_dssp ---------HSTHHHHHHHHHHHHHHC-SCEEE---ECSSCCHHHHHHHHHT--TEEEEECCCBCSCHHHHHHHSTTCCH
T ss_pred ---------cCHHHHHHHHHHHHhhcC-ceEEE---eCCCCCHHHHHHHHHc--CCCEEEEeeecCCHHHHHHhCCCCCH
Confidence 012457888888876543 34433 4667899999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
++++++++.+++. |+.+.+++|+|+ |||.+++.++++++++++++.+.+++|.|.||||++.
T Consensus 188 ~~~l~~i~~a~~~--Gi~v~~~~i~Gl-get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~ 249 (350)
T 3t7v_A 188 DGRVNARRFAKQQ--GYCVEDGILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEG 249 (350)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEEEESS-SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTT
T ss_pred HHHHHHHHHHHHc--CCeEccceEeec-CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCcc
Confidence 9999999999999 999999999999 9999999999999999999999999999999999986
No 4
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.89 E-value=4.7e-22 Score=204.89 Aligned_cols=185 Identities=16% Similarity=0.232 Sum_probs=160.4
Q ss_pred EEEEEEcccCCccCcccccCCCCCcc-c-cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccc
Q 041524 235 TAFVSVMRGCNNMCSFCIVPFTRGRE-R-SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLS 312 (524)
Q Consensus 235 ~a~v~isRGC~~~CsFC~vp~~~G~~-R-sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~ 312 (524)
.+.|++++||+++|.||..+...+.. + ..++++|+++++.+.+.|+++|.|.|.....+
T Consensus 54 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~------------------- 114 (348)
T 3iix_A 54 RAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYX------------------- 114 (348)
T ss_dssp EEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGG-------------------
T ss_pred EEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCc-------------------
Confidence 46689999999999999987655432 2 36999999999999999999999987552212
Q ss_pred cCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC
Q 041524 313 EGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT 392 (524)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t 392 (524)
....+.++++.+.+. ...+.+ ++..++++.++.|+++ |+..+.+++||.++++++.++++.+
T Consensus 115 -----------~~~~~~~li~~i~~~--~~~i~~---s~g~l~~e~l~~L~~a--g~~~v~i~let~~~~~~~~i~~~~~ 176 (348)
T 3iix_A 115 -----------MPDVISDIVKEIKKM--GVAVTL---SLGEWPREYYEKWKEA--GADRYLLRHETANPVLHRKLRPDTS 176 (348)
T ss_dssp -----------TTHHHHHHHHHHHTT--SCEEEE---ECCCCCHHHHHHHHHH--TCCEEECCCBCSCHHHHHHHSTTSC
T ss_pred -----------cHHHHHHHHHHHHhc--CceEEE---ecCCCCHHHHHHHHHh--CCCEEeeeeeeCCHHHHHHhCCCcC
Confidence 014588888888775 344443 3456899999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 393 REAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
.++++++++.+++. |+.+.+.+|+|+||||.+++.++++++.+++++.+.+++|.|.|||+++.
T Consensus 177 ~~~~~~~i~~~~~~--Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~ 240 (348)
T 3iix_A 177 FENRLNCLLTLKEL--GYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLAN 240 (348)
T ss_dssp HHHHHHHHHHHHHT--TCEEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTT
T ss_pred HHHHHHHHHHHHHh--CCeeccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCccc
Confidence 99999999999999 99999999999999999999999999999999999999999999999986
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.87 E-value=9.2e-21 Score=197.23 Aligned_cols=195 Identities=15% Similarity=0.152 Sum_probs=160.4
Q ss_pred eEEEEEE-cccCCccCcccccCCCC--C--ccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 234 VTAFVSV-MRGCNNMCSFCIVPFTR--G--RERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 234 ~~a~v~i-sRGC~~~CsFC~vp~~~--G--~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
....|.+ ++||+++|.||.++... + +++.+++++|+++++.+.+.|++.|.|.+... + +.+
T Consensus 65 ~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~--~------------p~~ 130 (369)
T 1r30_A 65 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK--N------------PHE 130 (369)
T ss_dssp EEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS--S------------CCT
T ss_pred EEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCC--C------------CCc
Confidence 3566776 99999999999987643 2 35668999999999999989999999887421 1 000
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhC
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMR 388 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~ 388 (524)
. ....+.++++.+.+.. ..+. .++..++++.++.|+++ |+.++++++|| ++++++.++
T Consensus 131 ~--------------~~~~l~~ll~~ik~~g--~~i~---~t~G~l~~e~l~~L~~a--Gvd~v~i~les-~~e~~~~i~ 188 (369)
T 1r30_A 131 R--------------DMPYLEQMVQGVKAMG--LEAC---MTLGTLSESQAQRLANA--GLDYYNHNLDT-SPEFYGNII 188 (369)
T ss_dssp T--------------THHHHHHHHHHHHHTT--SEEE---EECSSCCHHHHHHHHHH--CCCEEECCCBS-CHHHHHHHC
T ss_pred C--------------CHHHHHHHHHHHHHcC--CeEE---EecCCCCHHHHHHHHHC--CCCEEeecCcC-CHHHHHHhC
Confidence 0 1245788888887753 3343 34566899999999999 99999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC--CCeEEEEeeecCCCChhcccCCCCCCH
Q 041524 389 RGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG--YDMAYMFAYSMRERTHAHRNYVDDVPE 466 (524)
Q Consensus 389 R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~--~d~~~i~~~sp~pGT~~~~~~~~~v~~ 466 (524)
|+++.+++++.++.+++. |+.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||+++. . ..++.
T Consensus 189 ~~~~~~~~l~~i~~a~~~--Gi~v~~~~I~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~-~-~~~~~ 263 (369)
T 1r30_A 189 TTRTYQERLDTLEKVRDA--GIKVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLAD-N-DDVDA 263 (369)
T ss_dssp CSSCHHHHHHHHHHHHHH--HCEEECCEEECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSS-C-CCCCH
T ss_pred CCCCHHHHHHHHHHHHHc--CCeeeeeeEeeC-CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCC-C-CCCCH
Confidence 999999999999999999 999999999999 999999999999999997 8899999999999999985 2 34444
Q ss_pred HHH
Q 041524 467 EVK 469 (524)
Q Consensus 467 ~~k 469 (524)
+..
T Consensus 264 ~~~ 266 (369)
T 1r30_A 264 FDF 266 (369)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.72 E-value=4e-16 Score=160.17 Aligned_cols=199 Identities=11% Similarity=0.130 Sum_probs=158.0
Q ss_pred eEEEEEEcccCCccCcccccCCC-------CCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCC
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFT-------RGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPG 306 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~-------~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g 306 (524)
....|+++++|+.+|.||..+.. .++....+.+++.+.++.+.+.|++.|.|+|......
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~------------- 80 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR------------- 80 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGS-------------
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccch-------------
Confidence 46778999999999999987652 1234567899999999999988999999987443322
Q ss_pred CccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 307 ANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
..+.++++.+.+......+.+++ +...+ ++.++.|+++ |+.+|.++++|.++++++.
T Consensus 81 -------------------~~l~~li~~~~~~~~~~~i~i~T-NG~ll-~~~~~~L~~~--g~~~v~iSld~~~~~~~~~ 137 (340)
T 1tv8_A 81 -------------------RDLDVLIAKLNQIDGIEDIGLTT-NGLLL-KKHGQKLYDA--GLRRINVSLDAIDDTLFQS 137 (340)
T ss_dssp -------------------TTHHHHHHHHTTCTTCCEEEEEE-CSTTH-HHHHHHHHHH--TCCEEEEECCCSSHHHHHH
T ss_pred -------------------hhHHHHHHHHHhCCCCCeEEEEe-Cccch-HHHHHHHHHC--CCCEEEEecCCCCHHHHHH
Confidence 24788888887764433666653 44444 4588999998 9999999999999999999
Q ss_pred hCCCC-CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccCCCCCC
Q 041524 387 MRRGY-TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNYVDDVP 465 (524)
Q Consensus 387 m~R~~-t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~~~~v~ 465 (524)
++++. +.+++++.++.++++ |+.+...+++ +||++.+++.++++++.+++++ +.+..|.|.++|+.+. ....++
T Consensus 138 i~~~~~~~~~v~~~i~~l~~~--g~~v~i~~vv-~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~p~~~~~~~~-~~~~~~ 212 (340)
T 1tv8_A 138 INNRNIKATTILEQIDYATSI--GLNVKVNVVI-QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWD-FSKVVT 212 (340)
T ss_dssp HHSSCCCHHHHHHHHHHHHHT--TCEEEEEEEE-CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSBC-CSSCCC
T ss_pred hhCCCCCHHHHHHHHHHHHHC--CCCEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEEeeEcCCCccch-hhcCCC
Confidence 98877 999999999999999 8888888777 7999999999999999999997 6777899999988764 234566
Q ss_pred HHHHHHHH
Q 041524 466 EEVKQRRL 473 (524)
Q Consensus 466 ~~~k~~Rl 473 (524)
.+...+++
T Consensus 213 ~~e~~~~l 220 (340)
T 1tv8_A 213 KDEMLTMI 220 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444443
No 7
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.59 E-value=2.3e-14 Score=138.97 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=134.5
Q ss_pred eEEEEEEcccCCccCcccccCCCC--CccccCChHHHHHHHHHHHHC---CCcEEEEEeccCCCCCCccCCccccCCCCc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTR--GRERSRPVESIVKEVDELWKE---GVKEVTLLGQNVNSYNDTSGMEKEVEPGAN 308 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~--G~~Rsr~~e~Iv~Ei~~l~~~---G~kei~l~d~n~~~y~~~~~~~~~~~~g~~ 308 (524)
...++ .+.||+.+|.||..+... +..+.+++++++++++.+.+. ++..|.|.|.....+
T Consensus 20 ~~~~i-~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~--------------- 83 (245)
T 3c8f_A 20 IRFIT-FFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQ--------------- 83 (245)
T ss_dssp EEEEE-EESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGG---------------
T ss_pred cEEEE-EeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCC---------------
Confidence 33444 567999999999987543 345678999999999987664 468899988544322
Q ss_pred cccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh
Q 041524 309 WRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM 387 (524)
Q Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m 387 (524)
...+.++++.+.+. ...+.+.+ +...+ +++.++.+.+. +..+.++++|+++++++.+
T Consensus 84 ----------------~~~l~~l~~~~~~~--~~~i~i~T-ng~~~~~~~~~~~l~~~---~~~v~isld~~~~~~~~~~ 141 (245)
T 3c8f_A 84 ----------------AEFVRDWFRACKKE--GIHTCLDT-NGFVRRYDPVIDELLEV---TDLVMLDLKQMNDEIHQNL 141 (245)
T ss_dssp ----------------HHHHHHHHHHHHTT--TCCEEEEE-CCCCCCCCHHHHHHHHT---CSEEEEECCCSSHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHc--CCcEEEEe-CCCcCcCHHHHHHHHHh---CCEEEEeCCCCCHHHhhhc
Confidence 12257888888765 23555554 23221 56677777764 5789999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCC--CCHHHHHHHHHHHHHcCC-CeEEEEeeecCCCCh
Q 041524 388 RRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCG--ETEEEHADTLTLMKAVGY-DMAYMFAYSMRERTH 455 (524)
Q Consensus 388 ~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~Pg--ET~ed~~~tl~~l~~l~~-d~~~i~~~sp~pGT~ 455 (524)
++ .+.+++.+.++.+++. |+.+...+++ .|| ++.+++.++++++.++++ ..+++.+|.|.+++.
T Consensus 142 ~~-~~~~~~~~~i~~l~~~--g~~v~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3c8f_A 142 VG-VSNHRTLEFAKYLANK--NVKVWIRYVV-VPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHK 208 (245)
T ss_dssp HS-SCSHHHHHHHHHHHHH--TCCEEEEEEE-CTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHH
T ss_pred cC-CCHHHHHHHHHHHHhc--CCEEEEEEee-cCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhH
Confidence 65 4569999999999999 7766665554 555 678999999999999985 788899999887754
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.58 E-value=5.8e-14 Score=144.29 Aligned_cols=176 Identities=13% Similarity=0.120 Sum_probs=131.5
Q ss_pred EEEc-ccCCccCcccccCCCC-----CccccCChHHHHHHHHHHHHC------C--------------CcEEEEE-eccC
Q 041524 238 VSVM-RGCNNMCSFCIVPFTR-----GRERSRPVESIVKEVDELWKE------G--------------VKEVTLL-GQNV 290 (524)
Q Consensus 238 v~is-RGC~~~CsFC~vp~~~-----G~~Rsr~~e~Iv~Ei~~l~~~------G--------------~kei~l~-d~n~ 290 (524)
+..+ +||+++|.||..+... +..+..++++|++++....+. | ++.|.|. +...
T Consensus 74 i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEP 153 (342)
T 2yx0_A 74 MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP 153 (342)
T ss_dssp EESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG
T ss_pred EEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcc
Confidence 3334 8999999999987542 145678999999998876431 2 4567775 3222
Q ss_pred CCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCC--
Q 041524 291 NSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNV-- 368 (524)
Q Consensus 291 ~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G-- 368 (524)
..+ ..+.++++.+.+. ...+.+.+ +.. + ++.++.|+++ |
T Consensus 154 ll~--------------------------------~~l~~ll~~~~~~--g~~i~l~T-NG~-~-~e~l~~L~~~--g~~ 194 (342)
T 2yx0_A 154 MLY--------------------------------PYMGDLVEEFHKR--GFTTFIVT-NGT-I-PERLEEMIKE--DKL 194 (342)
T ss_dssp GGS--------------------------------TTHHHHHHHHHHT--TCEEEEEE-CSC-C-HHHHHHHHHT--TCC
T ss_pred cch--------------------------------hhHHHHHHHHHHC--CCcEEEEc-CCC-c-HHHHHHHHhc--CCC
Confidence 211 1478888888765 24665553 222 2 8889999987 6
Q ss_pred cceeecCcCCcCHHHHhhhCC---CCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 369 CKYIHLPAQTGNSAVLERMRR---GYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 369 ~~~i~igiESgs~~vL~~m~R---~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+..+.+++++.++++++.+++ +.+.+++++.++.+++. |+.+...+++ +||++.+++.++++++.+++++.+.+
T Consensus 195 ~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l~~~--g~~v~i~~~l-~~g~n~~~~~~l~~~l~~~~~~~i~l 271 (342)
T 2yx0_A 195 PTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDL--PTRTVVRLTL-VKGENMHSPEKYAKLILKARPMFVEA 271 (342)
T ss_dssp CSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHHTTC--SSEEEEEEEE-CTTTTCCCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHHHhC--CCCEEEEEEE-ECCccHHHHHHHHHHHHHcCCCEEEE
Confidence 899999999999999999987 56899999999999998 8888888877 79999888999999999999999999
Q ss_pred EeeecCCCCh
Q 041524 446 FAYSMRERTH 455 (524)
Q Consensus 446 ~~~sp~pGT~ 455 (524)
.+|.|.++++
T Consensus 272 ~~~~~~~~~~ 281 (342)
T 2yx0_A 272 KAYMFVGYSR 281 (342)
T ss_dssp EECC------
T ss_pred EeeeecCCCc
Confidence 9998876654
No 9
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.32 E-value=1e-10 Score=123.33 Aligned_cols=181 Identities=15% Similarity=0.217 Sum_probs=137.1
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCC-ccccCChHHHHHHHHHHHH-CCCcEEEEEeccCCCCCCccCCccccCCCCcc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRG-RERSRPVESIVKEVDELWK-EGVKEVTLLGQNVNSYNDTSGMEKEVEPGANW 309 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G-~~Rsr~~e~Iv~Ei~~l~~-~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~ 309 (524)
...++.+.++.||+.+|.||......+ ..+..+.+++.+.++.+.+ .|+++|.|.|.+...+.
T Consensus 113 yp~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~--------------- 177 (416)
T 2a5h_A 113 YPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVS--------------- 177 (416)
T ss_dssp SSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSC---------------
T ss_pred CCCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCC---------------
Confidence 345678899999999999998765444 3356889999999998887 59999999986544330
Q ss_pred ccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecC----CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh
Q 041524 310 RLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSP----HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385 (524)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~----~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~ 385 (524)
...+.++++.+.+......+++.+. .|..+++++++.|+++ ..+.+++++.+++
T Consensus 178 ---------------d~~L~~il~~l~~~~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~----~~v~Isl~~~~~~--- 235 (416)
T 2a5h_A 178 ---------------DETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKY----HPVWLNTHFNHPN--- 235 (416)
T ss_dssp ---------------HHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGG----CSEEEEECCCSGG---
T ss_pred ---------------HHHHHHHHHHHHhcCCccEEEEEecccccccccCCHHHHHHHHhc----CcEEEEEecCCHH---
Confidence 1248888888887544346777652 4566889999999885 5688999988772
Q ss_pred hhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE--EcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhc
Q 041524 386 RMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI--CGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAH 457 (524)
Q Consensus 386 ~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI--~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~ 457 (524)
.+ + +++.++++.++++ |+.+....+ -|+ +++++++.+.++++.+++++..+++.+.+.+||+.+
T Consensus 236 ei----~-~~v~~ai~~L~~a--Gi~v~i~~vll~Gv-Nd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~ 301 (416)
T 2a5h_A 236 EI----T-EESTRACQLLADA--GVPLGNQSVLLRGV-NDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHF 301 (416)
T ss_dssp GC----C-HHHHHHHHHHHHT--TCCEEEEEECCTTT-TCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGG
T ss_pred HH----h-HHHHHHHHHHHHc--CCEEEEEEEEECCC-CCCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccc
Confidence 22 3 8999999999999 776554443 366 388899999999999999887667666667898865
No 10
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.31 E-value=1.1e-11 Score=125.35 Aligned_cols=175 Identities=12% Similarity=0.135 Sum_probs=109.8
Q ss_pred eEEEEEEc-ccCCccCcccccCCCC--C-------ccccCChHHHHHHHHHHHHC------C---------------CcE
Q 041524 234 VTAFVSVM-RGCNNMCSFCIVPFTR--G-------RERSRPVESIVKEVDELWKE------G---------------VKE 282 (524)
Q Consensus 234 ~~a~v~is-RGC~~~CsFC~vp~~~--G-------~~Rsr~~e~Iv~Ei~~l~~~------G---------------~ke 282 (524)
....++++ .||+++|.||..+... | ..+..++++|++++....+. | ++.
T Consensus 51 ~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~ 130 (311)
T 2z2u_A 51 RCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKH 130 (311)
T ss_dssp GEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCE
T ss_pred CeEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCE
Confidence 45667888 6999999999976421 1 24678899999888765321 2 345
Q ss_pred EEEE-eccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHH
Q 041524 283 VTLL-GQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYI 361 (524)
Q Consensus 283 i~l~-d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~ 361 (524)
|.|. | |.++. ...+.++++.+.+. .+.+.+.+ +.. + ++.++.
T Consensus 131 i~~s~g------------------GEPll--------------~~~l~~li~~~~~~--g~~~~l~T-NG~-~-~~~l~~ 173 (311)
T 2z2u_A 131 VAISLS------------------GEPTL--------------YPYLDELIKIFHKN--GFTTFVVS-NGI-L-TDVIEK 173 (311)
T ss_dssp EEECSS------------------SCGGG--------------STTHHHHHHHHHHT--TCEEEEEE-CSC-C-HHHHHH
T ss_pred EEEeCC------------------cCccc--------------hhhHHHHHHHHHHC--CCcEEEEC-CCC-C-HHHHHh
Confidence 6665 3 22210 12478888888765 24565553 222 2 555554
Q ss_pred HHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcC
Q 041524 362 MRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVG 439 (524)
Q Consensus 362 l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~ 439 (524)
| |...+.+++++.++++.+.++++ .+.+.+++.++.+++. | .+...++ ..||.+. ++.++++++.+++
T Consensus 174 L-----~~~~v~isld~~~~~~~~~i~~~~~~~~~~v~~~i~~l~~~--g-~v~i~~~-~~~g~n~-~~~~~~~~~~~~~ 243 (311)
T 2z2u_A 174 I-----EPTQLYISLDAYDLDSYRRICGGKKEYWESILNTLDILKEK--K-RTCIRTT-LIRGYND-DILKFVELYERAD 243 (311)
T ss_dssp C-----CCSEEEEECCCSSTTTC----CCCHHHHHHHHHHHHHHTTS--S-SEEEEEE-ECTTTTC-CGGGTHHHHHHHT
T ss_pred C-----CCCEEEEEeecCCHHHHHHHhCCccchHHHHHHHHHHHHhc--C-CEEEEEE-EECCcch-hHHHHHHHHHHcC
Confidence 4 56899999999999999999887 6789999999999988 5 4443332 3477666 8999999999999
Q ss_pred CCeEEEEeeecCCCCh
Q 041524 440 YDMAYMFAYSMRERTH 455 (524)
Q Consensus 440 ~d~~~i~~~sp~pGT~ 455 (524)
++.+.+++|.|.++++
T Consensus 244 ~~~i~l~~~~p~g~~~ 259 (311)
T 2z2u_A 244 VHFIELKSYMHVGYSQ 259 (311)
T ss_dssp CSEEEEEECC------
T ss_pred CCEEEEEeeEEccccc
Confidence 9999999999998887
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.16 E-value=5.2e-10 Score=116.74 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=130.7
Q ss_pred CCeEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHH----------CCCcEEEEEeccCCCCCCccCCcc
Q 041524 232 NSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWK----------EGVKEVTLLGQNVNSYNDTSGMEK 301 (524)
Q Consensus 232 ~~~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~----------~G~kei~l~d~n~~~y~~~~~~~~ 301 (524)
.+.+..|+++.||+.+|.||..+.. |..|..++++|++++..... .++..|.|.|.
T Consensus 113 ~r~tlcVSsq~GCnl~C~fC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~Gg------------- 178 (404)
T 3rfa_A 113 DRATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGM------------- 178 (404)
T ss_dssp SCEEEECCCEEECSSCCTTCGGGTT-CEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSS-------------
T ss_pred CCceEEEEeCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCC-------------
Confidence 4567888999999999999998643 45678999999999987654 24778888841
Q ss_pred ccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc----eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 302 EVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE----MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 302 ~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~----~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
|.++. +...+.++++.+.+..+. .++.+++.- +.+. ++.+.+. +-..+.+.+.
T Consensus 179 ----GEPLl-------------n~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG---~~p~-i~~L~~~--~d~~LaiSLk 235 (404)
T 3rfa_A 179 ----GEPLL-------------NLNNVVPAMEIMLDDFGFGLSKRRVTLSTSG---VVPA-LDKLGDM--IDVALAISLH 235 (404)
T ss_dssp ----SCGGG-------------CHHHHHHHHHHHHSTTTTCCCGGGEEEEESC---CHHH-HHHHHHH--CCCEEEEECC
T ss_pred ----CCccc-------------CHHHHHHHHHHHHhhcCcCcCCCceEEECCC---cHHH-HHHHHHh--hcceEEeccc
Confidence 33320 112466777777653221 156665421 1244 4555554 5567889999
Q ss_pred CcCHHHHhhhC---CCCCHHHHHHHHHHH-HHhCC---CcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeec
Q 041524 378 TGNSAVLERMR---RGYTREAYLDLVQKI-RQIIP---DVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 378 Sgs~~vL~~m~---R~~t~e~~~~~v~~i-r~~~p---gi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp 450 (524)
+.+++..+.+. ++++.++++++++.. .+... .+.+..-+|-|+ .++++++.+.++|+..++. .+++.+|.|
T Consensus 236 a~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~~~V~ie~vLI~Gv-NDs~e~~~~La~ll~~l~~-~VnLIpynP 313 (404)
T 3rfa_A 236 APNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNP 313 (404)
T ss_dssp CSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTTTCEEEEEEEBTTT-TCSHHHHHHHHHHTTTSCE-EEEEEECCC
T ss_pred CCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCcccEEEEEEEecCC-CCCHHHHHHHHHHHHcCCC-cEEEEeccC
Confidence 99999988765 688999999999544 44422 345555555565 7899999999999998864 688899999
Q ss_pred CCCChh
Q 041524 451 RERTHA 456 (524)
Q Consensus 451 ~pGT~~ 456 (524)
++++..
T Consensus 314 ~~~~~~ 319 (404)
T 3rfa_A 314 FPGAPY 319 (404)
T ss_dssp CTTCCC
T ss_pred CCCCCC
Confidence 988654
No 12
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.68 E-value=0.00035 Score=71.67 Aligned_cols=165 Identities=10% Similarity=0.131 Sum_probs=103.1
Q ss_pred EEEEcccCCccCcccccCCCCCc--c--ccCChHHHHHHHHHHH-HCCCc-EEEEEeccCCCCCCccCCccccCCCCccc
Q 041524 237 FVSVMRGCNNMCSFCIVPFTRGR--E--RSRPVESIVKEVDELW-KEGVK-EVTLLGQNVNSYNDTSGMEKEVEPGANWR 310 (524)
Q Consensus 237 ~v~isRGC~~~CsFC~vp~~~G~--~--Rsr~~e~Iv~Ei~~l~-~~G~k-ei~l~d~n~~~y~~~~~~~~~~~~g~~~~ 310 (524)
.+...+||+++|.||......|. + .....++++++++... +.+.+ ..+-+|.+...|.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp---------------- 173 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVG---------------- 173 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHH----------------
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcch----------------
Confidence 46678999999999998755542 1 3567999999987643 33433 3344444433230
Q ss_pred cccCcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC
Q 041524 311 LSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG 390 (524)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~ 390 (524)
......-..++|+.+.+. +...+.+.+=.+ .++ .|..|+.. +-..+.+.+-+ +++.+.+-.+
T Consensus 174 ----------~E~~~~ltr~~le~l~~~-~~~~v~i~TKs~-lid--~L~~l~~~--~~v~V~~Sitt--~~l~r~~EP~ 235 (368)
T 4fhd_A 174 ----------IDHLTHSLKKAIEFIGAT-DYGRLRFVTKYE-HVD--HLLDARHN--GKTRFRFSINS--RYVINHFEPG 235 (368)
T ss_dssp ----------HHTTTCHHHHHHHHHHHC-SSEEEEEEESCC-CCG--GGTTCCCT--TCEEEEEEECC--HHHHHHHCTT
T ss_pred ----------hhHHHhHHHHHHHHHHhC-CCceEEEEeCCc-CHH--HHHhcCcC--CceEEEEEEcC--HHHHHHcCCC
Confidence 000011234556666553 334555554222 222 23333332 55556666644 7788888765
Q ss_pred C-CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCH-HHHHHHHHHHHH
Q 041524 391 Y-TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETE-EEHADTLTLMKA 437 (524)
Q Consensus 391 ~-t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~-ed~~~tl~~l~~ 437 (524)
. +.++-+++++.++++ |+.+...+.-=+|+++. +++.+.++.+.+
T Consensus 236 aps~~~RL~Ai~~l~~a--Gipv~v~iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 236 TSSFDGRLAAARKVAGA--GYKLGFVVAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp SCCHHHHHHHHHHHHHT--TCEEEEEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CCeEEEEEeCcCCCCCCHHHHHHHHHHHHH
Confidence 4 799999999999999 99888888777888765 688888876655
No 13
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.13 E-value=0.0094 Score=54.48 Aligned_cols=118 Identities=13% Similarity=0.196 Sum_probs=85.3
Q ss_pred hH-HHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHH
Q 041524 327 RF-ADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQ 405 (524)
Q Consensus 327 ~~-~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~ 405 (524)
.+ .++++.+.+. .+.+.+.+ +. .++++.++.+.+. +..+.+.+.+.+++..+.++. .+.+.+.+.++.+++
T Consensus 19 ~~~~~l~~~~~~~--g~~~~l~T-NG-~l~~~~~~~l~~~---~d~v~isld~~~~~~~~~~~g-~~~~~i~~~i~~l~~ 90 (182)
T 3can_A 19 EFLIDILKRCGQQ--GIHRAVDT-TL-LARKETVDEVMRN---CELLLIDLKSMDSTVHQTFCD-VPNELILKNIRRVAE 90 (182)
T ss_dssp HHHHHHHHHHHHT--TCCEEEEC-TT-CCCHHHHHHHHHT---CSEEEEECCCSCHHHHHHHHS-SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCcEEEEC-CC-CCCHHHHHHHHhh---CCEEEEECCCCCHHHHHHHhC-CCHHHHHHHHHHHHh
Confidence 34 5788877664 24555553 32 2578888888874 678999999999999888753 456999999999999
Q ss_pred hCCCcEEE--EeEEEcCCCCCHHHHHHHHHHHHHc-CC-CeEEEEeeecCCCCh
Q 041524 406 IIPDVGLS--SDFICGFCGETEEEHADTLTLMKAV-GY-DMAYMFAYSMRERTH 455 (524)
Q Consensus 406 ~~pgi~i~--~~fI~G~PgET~ed~~~tl~~l~~l-~~-d~~~i~~~sp~pGT~ 455 (524)
. |+.+. +-++-|+ .++.+++.+.++++.++ ++ ..+.+.+|.|.....
T Consensus 91 ~--g~~v~i~~~v~~~~-n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~ 141 (182)
T 3can_A 91 A--DFPYYIRIPLIEGV-NADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGK 141 (182)
T ss_dssp T--TCCEEEEEEECBTT-TCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-----
T ss_pred C--CCeEEEEEEEECCC-CCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHH
Confidence 8 65544 4444343 37899999999999999 88 889999999876554
No 14
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.70 E-value=0.018 Score=52.08 Aligned_cols=111 Identities=11% Similarity=0.155 Sum_probs=64.5
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCC---C----------CCCcEEEEeeccCcchHHHHHHHHHHHHHH
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINV---P----------ENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~---~----------~~aDvv~intc~v~~~a~~~~~~~l~~~~~ 142 (524)
.++|.+.+.|--.--.=..++...|+..||+++... + .+||+|++++.. +. ....+.+.++.+
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~-~~-~~~~~~~~i~~L-- 93 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILN-GA-HLHLMKRLMAKL-- 93 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESS-SC-HHHHHHHHHHHH--
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeec-hh-hHHHHHHHHHHH--
Confidence 456666665433333336889999999999863211 1 489999995542 32 223344444443
Q ss_pred hhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCc-ccHHHHHHHH
Q 041524 143 LKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAY-RDLPRLLEEV 204 (524)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege-~~l~~Ll~~~ 204 (524)
++ +..++++|++||..++...+.+ +. .++|.|+.++.. ....+++..+
T Consensus 94 -~~-----------~g~~~i~v~vGG~~~~~~~~~l-~~-~G~d~v~~~~~~~~~~~~~~~~~ 142 (161)
T 2yxb_A 94 -RE-----------LGADDIPVVLGGTIPIPDLEPL-RS-LGIREIFLPGTSLGEIIEKVRKL 142 (161)
T ss_dssp -HH-----------TTCTTSCEEEEECCCHHHHHHH-HH-TTCCEEECTTCCHHHHHHHHHHH
T ss_pred -Hh-----------cCCCCCEEEEeCCCchhcHHHH-HH-CCCcEEECCCCCHHHHHHHHHHH
Confidence 11 1124688999998766544433 33 579987865442 2344554443
No 15
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=94.63 E-value=0.52 Score=46.63 Aligned_cols=147 Identities=9% Similarity=0.077 Sum_probs=99.2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++-++.|.+.|++.|.+.. +. . .+ | + +.-....++++.+.+. +
T Consensus 22 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~--~~-~------------~~-~-----~-------p~~~d~~~~~~~~~~~-~ 72 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSEAGLSVIETTS--FV-S------------PK-W-----V-------PQMGDHTEVLKGIQKF-P 72 (298)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEECCEE--CC-C------------TT-T-----C-------GGGTTHHHHHHHSCCC-T
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECC--Cc-C------------cc-c-----c-------cccCCHHHHHHHHhhC-C
Confidence 457899999999999999999987754 11 1 00 0 0 0001344555555442 2
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCH-HHHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNS-AVLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~-~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
...+.... .+.+-++...++ |+..+++.. +.|+ ...+.+++.. ..+.+.+.++.+++. |+.+..+++
T Consensus 73 ~~~~~~l~-----~~~~~i~~a~~a--g~~~v~i~~-~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~--G~~v~~~l~ 142 (298)
T 2cw6_A 73 GINYPVLT-----PNLKGFEAAVAA--GAKEVVIFG-AASELFTKKNINCSIEESFQRFDAILKAAQSA--NISVRGYVS 142 (298)
T ss_dssp TCBCCEEC-----CSHHHHHHHHHT--TCSEEEEEE-ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHT--TCEEEEEEE
T ss_pred CCEEEEEc-----CCHHhHHHHHHC--CCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEE
Confidence 22322221 256778888888 999999966 5554 4455677653 567888889999999 999988887
Q ss_pred E--cCCCC---CHHHHHHHHHHHHHcCCCeEEEE
Q 041524 418 C--GFCGE---TEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 418 ~--G~PgE---T~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
+ |.|.+ +.+.+.+.++.+.+++.+.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 176 (298)
T 2cw6_A 143 CALGCPYEGKISPAKVAEVTKKFYSMGCYEISLG 176 (298)
T ss_dssp TTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4 44533 67888888889999999987765
No 16
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=94.29 E-value=0.89 Score=44.80 Aligned_cols=147 Identities=7% Similarity=0.008 Sum_probs=98.2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++=++.|.+.|+..|.+......-| . +......++++.+.+. +
T Consensus 21 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~------------------~----------p~~~~~~e~~~~i~~~-~ 71 (295)
T 1ydn_A 21 RFVPTADKIALINRLSDCGYARIEATSFVSPKW------------------V----------PQLADSREVMAGIRRA-D 71 (295)
T ss_dssp SCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTT------------------C----------GGGTTHHHHHHHSCCC-S
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEccCcCccc------------------c----------ccccCHHHHHHHHHhC-C
Confidence 347899999999999889999988764221111 0 0011355677777554 3
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh-hCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER-MRRGY--TREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~-m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
..++.... + +.+.++...++ |+..+++-+ ++|+.-.+. +++.. ..+...+.++.+++. |+.+.+.+.
T Consensus 72 ~~~v~~l~--~---n~~~i~~a~~~--G~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~--G~~V~~~l~ 141 (295)
T 1ydn_A 72 GVRYSVLV--P---NMKGYEAAAAA--HADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAIND--GLAIRGYVS 141 (295)
T ss_dssp SSEEEEEC--S---SHHHHHHHHHT--TCSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEE
T ss_pred CCEEEEEe--C---CHHHHHHHHHC--CCCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEE
Confidence 44543322 2 46777878788 999998855 456555443 44432 456667778999999 999887776
Q ss_pred --EcCCCC---CHHHHHHHHHHHHHcCCCeEEEE
Q 041524 418 --CGFCGE---TEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 418 --~G~PgE---T~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
+|.|.+ +++.+.+.++.+.+.+.+.+.+.
T Consensus 142 ~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 175 (295)
T 1ydn_A 142 CVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLG 175 (295)
T ss_dssp CSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEec
Confidence 454543 67777778888889999988776
No 17
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=93.50 E-value=0.51 Score=41.06 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=59.8
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccC---C----------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHh
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVIN---V----------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFL 143 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~---~----------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~ 143 (524)
+++.+.+.|--.-..=...+...|+..||+++-. . ..+||+|++++.. +.. ...+.+.++.+
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~-~~~-~~~~~~~i~~l--- 78 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLY-GQG-EIDCKGLRQKC--- 78 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECS-STH-HHHHTTHHHHH---
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecC-cCc-HHHHHHHHHHH---
Confidence 3455555432222222678899999999986311 1 1489999995543 332 22344444433
Q ss_pred hhhhhhcccccccccCCCCEEEEEccccc--cc-H--HHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 144 KREWKKNVATGRSQSKHPPKIVVLGCMAE--RL-K--DKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 144 ~~~~~~~~~~~~~~~~p~~~IvvgG~~at--~~-~--e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
++ +..++.+|++||.... .. + ++.+++ -++|.++.+.. +..++++.+
T Consensus 79 ~~-----------~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~-~G~d~~~~~g~--~~~~~~~~l 130 (137)
T 1ccw_A 79 DE-----------AGLEGILLYVGGNIVVGKQHWPDVEKRFKD-MGYDRVYAPGT--PPEVGIADL 130 (137)
T ss_dssp HH-----------TTCTTCEEEEEESCSSSSCCHHHHHHHHHH-TTCSEECCTTC--CHHHHHHHH
T ss_pred Hh-----------cCCCCCEEEEECCCcCchHhhhhhHHHHHH-CCCCEEECCCC--CHHHHHHHH
Confidence 11 1223689999997532 11 1 233443 47898886543 455555443
No 18
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=93.44 E-value=2.6 Score=41.67 Aligned_cols=148 Identities=12% Similarity=0.080 Sum_probs=96.7
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++-++.|.+.|++.|.... |.+-. ..+ ......++++.+.+. +
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~--~~~~~-----------~~~---------------~~~d~~~~~~~~~~~-~ 75 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGS--FVSPK-----------WVP---------------QMAGSAEVFAGIRQR-P 75 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEE--CSCTT-----------TCG---------------GGTTHHHHHHHSCCC-T
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECC--CcCcc-----------ccc---------------cccCHHHHHHHhhhc-C
Confidence 457899999999999999999988764 11110 000 001344556666543 3
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
...+.... + +.+.++...++ |+..+++-.-+-+-...+.+++.. ..+.+.+.++.+++. |+.+.+.+..
T Consensus 76 ~~~~~~l~--~---~~~~i~~a~~a--G~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~--G~~V~~~l~~ 146 (302)
T 2ftp_A 76 GVTYAALA--P---NLKGFEAALES--GVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQH--QVRVRGYISC 146 (302)
T ss_dssp TSEEEEEC--C---SHHHHHHHHHT--TCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEEC
T ss_pred CCEEEEEe--C---CHHHHHHHHhC--CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEE
Confidence 33443321 2 56777777777 999999866443334556676643 466778888899998 9988887765
Q ss_pred c--CCC---CCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 419 G--FCG---ETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 419 G--~Pg---ET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
- .|. -+++.+.+.++.+.+.+.+.+.+.
T Consensus 147 ~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 179 (302)
T 2ftp_A 147 VLGCPYDGDVDPRQVAWVARELQQMGCYEVSLG 179 (302)
T ss_dssp TTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3 343 256777777777779999987665
No 19
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=92.47 E-value=2.6 Score=41.80 Aligned_cols=147 Identities=7% Similarity=-0.031 Sum_probs=96.5
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++-++.|.+.|++.|.+.. |.+.. ..+ .-....++++.+.+. +
T Consensus 23 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~--~~~~~-----------~~p---------------~~~d~~~~~~~~~~~-~ 73 (307)
T 1ydo_A 23 VWIATEDKITWINQLSRTGLSYIEITS--FVHPK-----------WIP---------------ALRDAIDVAKGIDRE-K 73 (307)
T ss_dssp SCCCHHHHHHHHHHHHTTTCSEEEEEE--CSCTT-----------TCG---------------GGTTHHHHHHHSCCC-T
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECC--CcCcc-----------ccc---------------ccCCHHHHHHHhhhc-C
Confidence 567899999999999999999988764 11110 000 001234555555443 3
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH-HHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA-VLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~-vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
...+.... + +.+-++...++ |...+++.+ |.|+. ..+.+++.. ..+.+.+.++.+++. |..+..+++
T Consensus 74 ~~~~~~l~--~---~~~~i~~a~~~--g~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~i~ 143 (307)
T 1ydo_A 74 GVTYAALV--P---NQRGLENALEG--GINEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKA--NLTTRAYLS 143 (307)
T ss_dssp TCEEEEEC--C---SHHHHHHHHHH--TCSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT--TCEEEEEEE
T ss_pred CCeEEEEe--C---CHHhHHHHHhC--CcCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEE
Confidence 44443322 2 45567777777 999999877 55554 444566532 356678888999999 988888887
Q ss_pred EcC--CC---CCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 418 CGF--CG---ETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 418 ~G~--Pg---ET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
.-| |. -+.+.+.+.++.+.+.+.+.+.+-
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 177 (307)
T 1ydo_A 144 TVFGCPYEKDVPIEQVIRLSEALFEFGISELSLG 177 (307)
T ss_dssp CTTCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred EEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 654 43 257788888888889999977654
No 20
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=92.33 E-value=1.1 Score=50.01 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=61.8
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCC--------------CCCCcEEEEeeccCcchHHHHHHHHHHHH
Q 041524 75 SQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINV--------------PENAEVIFINTCAIRDYAEHKVWQRLNYF 140 (524)
Q Consensus 75 ~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~--------------~~~aDvv~intc~v~~~a~~~~~~~l~~~ 140 (524)
..+||.+.|.|--.--.=..++...|+..||++ ++. ..+||+|+|++..-+. ...+...++.+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeV-i~lG~~v~~eeiv~aA~e~~adiVglSsl~~~~--~~~~~~vi~~L 679 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDV-DIGPLFQTPREVAQQAVDADVHAVGVSTLAAGH--KTLVPELIKEL 679 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEE-EECCTTCCHHHHHHHHHHTTCSEEEEEECSSCH--HHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEE-eeCCCCCCHHHHHHHHHHcCCCEEEEeeecHHH--HHHHHHHHHHH
Confidence 456799999986544444578889999999997 322 1589999996543222 22233344333
Q ss_pred HHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCC
Q 041524 141 WFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192 (524)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ge 192 (524)
+. +...+++|++||..+....+.+.+ -++|.++.+.
T Consensus 680 ---r~-----------~G~~dv~VivGG~~P~~d~~~l~~--~GaD~~f~pg 715 (762)
T 2xij_A 680 ---NS-----------LGRPDILVMCGGVIPPQDYEFLFE--VGVSNVFGPG 715 (762)
T ss_dssp ---HH-----------TTCTTSEEEEEESCCGGGHHHHHH--HTCCEEECTT
T ss_pred ---Hh-----------cCCCCCEEEEeCCCCcccHHHHHh--CCCCEEeCCC
Confidence 11 222368999999555544444433 4799988843
No 21
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=92.25 E-value=0.64 Score=51.49 Aligned_cols=107 Identities=13% Similarity=0.090 Sum_probs=66.0
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCC--------------CCCCcEEEEeeccCcchHHHHHHHHHHHH
Q 041524 75 SQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINV--------------PENAEVIFINTCAIRDYAEHKVWQRLNYF 140 (524)
Q Consensus 75 ~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~--------------~~~aDvv~intc~v~~~a~~~~~~~l~~~ 140 (524)
..+||.+.|.|--.--.=...+...|+..||++ ++. ..+||+|+|++..-+. ...+...++.+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeV-i~lG~~v~~eeiv~aA~e~~adiVglSsl~~~~--~~~~~~vi~~L 671 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDV-DVGPLFQTPEETARQAVEADVHVVGVSSLAGGH--LTLVPALRKEL 671 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEE-EECCTTBCHHHHHHHHHHTTCSEEEEEECSSCH--HHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEE-EeCCCCCCHHHHHHHHHHcCCCEEEEeeecHhH--HHHHHHHHHHH
Confidence 456799999985544444668889999999997 322 1589999996643222 22233444433
Q ss_pred HHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHH
Q 041524 141 WFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLE 202 (524)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~ 202 (524)
++ +...+++|++||..+....+.+ .+ -++|.++.... ...+++.
T Consensus 672 ---~~-----------~G~~~i~VivGG~~p~~d~~~l-~~-~GaD~~f~~gt--~~~e~a~ 715 (727)
T 1req_A 672 ---DK-----------LGRPDILITVGGVIPEQDFDEL-RK-DGAVEIYTPGT--VIPESAI 715 (727)
T ss_dssp ---HH-----------TTCTTSEEEEEESCCGGGHHHH-HH-TTEEEEECTTC--CHHHHHH
T ss_pred ---Hh-----------cCCCCCEEEEcCCCccccHHHH-Hh-CCCCEEEcCCc--cHHHHHH
Confidence 11 2223689999996666544444 33 57999988533 3444443
No 22
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=90.70 E-value=1.2 Score=43.13 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=61.2
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeecc---CCC----------CCCcEEEEeeccCcchHHHHHHHHHHHHHH
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVI---NVP----------ENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~---~~~----------~~aDvv~intc~v~~~a~~~~~~~l~~~~~ 142 (524)
.++|-+.+.+=-.--.=..+++..|+.+||+++. ..+ .++|+|++++.. +.. ...+.+.++.+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~-~~~-~~~~~~~i~~l-- 198 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALM-TTT-MYAFKEVNDML-- 198 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCC-TTT-TTHHHHHHHHH--
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeec-cCC-HHHHHHHHHHH--
Confidence 4456555543222223378899999999998631 111 489999996532 222 12233444443
Q ss_pred hhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 143 LKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
+ +..++++|++||..++ +++.+. -++|+.+. ++ ....+++..+.
T Consensus 199 -~------------~~~~~~~v~vGG~~~~---~~~~~~-igad~~~~-da-~~av~~~~~l~ 242 (258)
T 2i2x_B 199 -L------------ENGIKIPFACGGGAVN---QDFVSQ-FALGVYGE-EA-ADAPKIADAII 242 (258)
T ss_dssp -H------------TTTCCCCEEEESTTCC---HHHHHT-STTEEECS-ST-THHHHHHHHHH
T ss_pred -H------------hcCCCCcEEEECccCC---HHHHHH-cCCeEEEC-CH-HHHHHHHHHHH
Confidence 1 2246689999998877 233333 35776543 34 44556666554
No 23
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=90.49 E-value=1.2 Score=41.33 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=54.2
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCCC-------------CCCcEEEEeeccCcchHHHHHHHHHHHHHH
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINVP-------------ENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~-------------~~aDvv~intc~v~~~a~~~~~~~l~~~~~ 142 (524)
.++|-+.+.+--.--.=..+++..|+.+||+++.-.. .++|+|++++. .+.. ...+.+.++.+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~-~~~~-~~~~~~~i~~l-- 163 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL-LTTT-MMNMKSTIDAL-- 163 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC-SGGG-THHHHHHHHHH--
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc-cccc-HHHHHHHHHHH--
Confidence 4466555543223233378999999999998631111 48999999653 3332 22344444443
Q ss_pred hhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEE
Q 041524 143 LKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVC 189 (524)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv 189 (524)
++ +...++++|++||..++ + ++.+. -++|+++
T Consensus 164 -~~----------~~~~~~~~v~vGG~~~~--~-~~~~~-~gad~~~ 195 (210)
T 1y80_A 164 -IA----------AGLRDRVKVIVGGAPLS--Q-DFADE-IGADGYA 195 (210)
T ss_dssp -HH----------TTCGGGCEEEEESTTCC--H-HHHHH-HTCSEEC
T ss_pred -Hh----------cCCCCCCeEEEECCCCC--H-HHHHH-cCCeEEE
Confidence 11 01125689999999876 2 33333 3577643
No 24
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=85.84 E-value=7.7 Score=38.87 Aligned_cols=145 Identities=6% Similarity=0.008 Sum_probs=87.0
Q ss_pred ccCChHHHHHHHH-HHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHh--
Q 041524 261 RSRPVESIVKEVD-ELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSL-- 337 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~-~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~-- 337 (524)
...+.++.++-++ .|.+.|++.|.+.....+ ..+| ..+..+.+....
T Consensus 36 ~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~--------------~~~~----------------~~v~~~~~~~~~~~ 85 (337)
T 3ble_A 36 VSFSTSEKLNIAKFLLQKLNVDRVEIASARVS--------------KGEL----------------ETVQKIMEWAATEQ 85 (337)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEEETTSC--------------TTHH----------------HHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEeCCCCC--------------hhHH----------------HHHHHHHhhhhhhc
Confidence 4588999999999 998889999887542111 1111 112222221100
Q ss_pred hCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEe
Q 041524 338 EFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSD 415 (524)
Q Consensus 338 ~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~ 415 (524)
..+...+...... .. -++...++ |...+++-+-+-+....+.+++.. ..+.+.+.++.+++. |..+..+
T Consensus 86 ~~~~~~i~~l~~~----~~-~i~~a~~~--g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~--G~~v~~~ 156 (337)
T 3ble_A 86 LTERIEILGFVDG----NK-TVDWIKDS--GAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKS--GLKINVY 156 (337)
T ss_dssp CGGGEEEEEESST----TH-HHHHHHHH--TCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHT--TCEEEEE
T ss_pred cCCCCeEEEEccc----hh-hHHHHHHC--CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEE
Confidence 1223333222121 12 56666667 899998866544445556667632 456777888888898 8888777
Q ss_pred EEEcCCC---CCHHHHHHHHHHHHHcCCCeEEE
Q 041524 416 FICGFCG---ETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 416 fI~G~Pg---ET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+.. +|. -+.+.+.+.++.+.+.+.+.+.+
T Consensus 157 ~~~-~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 188 (337)
T 3ble_A 157 LED-WSNGFRNSPDYVKSLVEHLSKEHIERIFL 188 (337)
T ss_dssp EET-HHHHHHHCHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEE-CCCCCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 664 222 24666677777788888887665
No 25
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=85.31 E-value=8.3 Score=37.83 Aligned_cols=144 Identities=10% Similarity=-0.025 Sum_probs=84.4
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++.++-++.|.+.|++.|.... ... ....+ +.++.+.+..+
T Consensus 22 ~~~~~~~K~~i~~~L~~~Gv~~IE~g~---p~~------------------------------~~~d~-e~v~~i~~~~~ 67 (293)
T 3ewb_X 22 VNFDVKEKIQIALQLEKLGIDVIEAGF---PIS------------------------------SPGDF-ECVKAIAKAIK 67 (293)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSEEEEEC---GGG------------------------------CHHHH-HHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCC------------------------------CccHH-HHHHHHHHhcC
Confidence 568899999999999999999988653 111 01112 22334444334
Q ss_pred ceEEEEec-CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH-HHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeE
Q 041524 341 EMRFRYTS-PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA-VLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDF 416 (524)
Q Consensus 341 ~~~ir~~s-~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~-vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~f 416 (524)
..++..-. ....++ +..++.++.+ |...|++-+ |.|+- ..+.+++.. ..+.+.+.++.+++. |..+..+.
T Consensus 68 ~~~i~~l~~~~~~di-~~a~~~~~~a--g~~~v~i~~-~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~ 141 (293)
T 3ewb_X 68 HCSVTGLARCVEGDI-DRAEEALKDA--VSPQIHIFL-ATSDVHMEYKLKMSRAEVLASIKHHISYARQK--FDVVQFSP 141 (293)
T ss_dssp SSEEEEEEESSHHHH-HHHHHHHTTC--SSEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTT--CSCEEEEE
T ss_pred CCEEEEEecCCHHHH-HHHHHHHhhc--CCCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhC--CCEEEEEe
Confidence 44432221 111111 2344445556 888888866 44443 444555532 345567777778888 77666544
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 417 ICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 417 I~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
..+. --+++.+.+.++.+.+.+.+.+.+
T Consensus 142 ~d~~-~~~~~~~~~~~~~~~~~G~~~i~l 169 (293)
T 3ewb_X 142 EDAT-RSDRAFLIEAVQTAIDAGATVINI 169 (293)
T ss_dssp ETGG-GSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCC-CCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4321 246677788888888999987654
No 26
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=84.28 E-value=10 Score=37.95 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=93.7
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEE-eccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLL-GQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~-d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
...+.++.++-++.|.+.|++.|.+. ++.+. +.+... |+. ...-.+.++++.+..
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p--------------~ssp~~--g~~--------~~~~~e~l~~i~~~~ 80 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVDSIEVAHGDGLQ--------------GSSFNY--GFG--------RHTDLEYIEAVAGEI 80 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEECSCTTSTT--------------CCBTTT--BCC--------SSCHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCC--------------CCCCcc--cCC--------CCCHHHHHHHHHhhC
Confidence 45788999999999999999999873 11111 000000 110 112445666666654
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG 419 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G 419 (524)
+...+..-. .|..-.++.++...++ |+..+++.. +.++ .+...+.++.+++. |+.+...+...
T Consensus 81 ~~~~i~~l~-~p~~~~~~~i~~a~~a--Gvd~v~I~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~a 143 (345)
T 1nvm_A 81 SHAQIATLL-LPGIGSVHDLKNAYQA--GARVVRVAT-HCTE-----------ADVSKQHIEYARNL--GMDTVGFLMMS 143 (345)
T ss_dssp SSSEEEEEE-CBTTBCHHHHHHHHHH--TCCEEEEEE-ETTC-----------GGGGHHHHHHHHHH--TCEEEEEEEST
T ss_pred CCCEEEEEe-cCCcccHHHHHHHHhC--CcCEEEEEE-eccH-----------HHHHHHHHHHHHHC--CCEEEEEEEeC
Confidence 444443321 3333457788888888 999988864 3332 25678888999999 98887776544
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 420 FCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 420 ~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+.-+++.+.+.++.+.+.+.+.+.+
T Consensus 144 -~~~~~e~~~~ia~~~~~~Ga~~i~l 168 (345)
T 1nvm_A 144 -HMIPAEKLAEQGKLMESYGATCIYM 168 (345)
T ss_dssp -TSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred -CCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 5677888999999999998886654
No 27
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=83.74 E-value=12 Score=30.52 Aligned_cols=101 Identities=8% Similarity=0.064 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHCCCeec--cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEV--INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~--~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|.+.||+++ +.+. ..+|+|++....... ...++.+.+++
T Consensus 10 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~-~g~~~~~~l~~------------------ 70 (134)
T 3f6c_A 10 HPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGV-NGIQVLETLRK------------------ 70 (134)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSS-CHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCC-ChHHHHHHHHh------------------
Confidence 45567888899999999763 2222 368999997654332 23334444432
Q ss_pred cCCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCC
Q 041524 158 SKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQK 209 (524)
Q Consensus 158 ~~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~ 209 (524)
..|+.+|++ .+........+.++ ....|++..+-....+.+.++.+..|..
T Consensus 71 ~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 71 RQYSGIIIIVSAKNDHFYGKHCAD-AGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp TTCCSEEEEEECC---CTHHHHHH-TTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEeCCCChHHHHHHHH-hCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 235666655 44433334445544 4567888888777777777777766553
No 28
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=83.70 E-value=9.7 Score=36.12 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=58.6
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..++++.++-++.+.+.|++-|.+.-.+ ..-.+.++++.+..
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t------------------------------------~~a~e~I~~l~~~~ 83 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS------------------------------------DAAVEAIRLLRQAQ 83 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS------------------------------------TTHHHHHHHHHHHC
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC------------------------------------CCHHHHHHHHHHhC
Confidence 366788999999999999999988875211 12456667777665
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
+..-+...+ .++.+.++...++ |+..++.|- .++++++.
T Consensus 84 ~~~~iGaGT----Vlt~~~a~~Ai~A--GA~fIvsP~--~~~~vi~~ 122 (232)
T 4e38_A 84 PEMLIGAGT----ILNGEQALAAKEA--GATFVVSPG--FNPNTVRA 122 (232)
T ss_dssp TTCEEEEEC----CCSHHHHHHHHHH--TCSEEECSS--CCHHHHHH
T ss_pred CCCEEeECC----cCCHHHHHHHHHc--CCCEEEeCC--CCHHHHHH
Confidence 666665553 3578888888888 999999773 45555543
No 29
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=83.39 E-value=1.5 Score=41.17 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHHHHHHCCCeeccC---CC----------CCCcEEEE--eeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 93 MEIVLSIMKNAGYSEVIN---VP----------ENAEVIFI--NTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~~~---~~----------~~aDvv~i--ntc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
..++...|+.+||+++.- -+ .+||+|++ ++.. ......+.+.++.+ ++ +
T Consensus 109 ~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~--~~~~~~~~~~i~~l---~~-----------~ 172 (215)
T 3ezx_A 109 HRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALM--TTSMLGQKDLMDRL---NE-----------E 172 (215)
T ss_dssp HHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSS--HHHHTHHHHHHHHH---HH-----------T
T ss_pred HHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcc--cCcHHHHHHHHHHH---HH-----------c
Confidence 678899999999986311 11 48999999 6543 23333344444443 11 1
Q ss_pred c-CCCCEEEEEccccc
Q 041524 158 S-KHPPKIVVLGCMAE 172 (524)
Q Consensus 158 ~-~p~~~IvvgG~~at 172 (524)
. .++++|++||...+
T Consensus 173 ~~~~~v~v~vGG~~~~ 188 (215)
T 3ezx_A 173 KLRDSVKCMFGGAPVS 188 (215)
T ss_dssp TCGGGSEEEEESSSCC
T ss_pred CCCCCCEEEEECCCCC
Confidence 1 13689999998776
No 30
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=82.70 E-value=21 Score=36.94 Aligned_cols=142 Identities=7% Similarity=-0.034 Sum_probs=86.8
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
.+.+.++-++=++.|.+.|+++|.... ... .....+.++.+.+...
T Consensus 56 ~~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~a-------------------------------sp~d~~~~~~i~~~~~ 101 (423)
T 3ivs_A 56 AFFDTEKKIQIAKALDNFGVDYIELTS---PVA-------------------------------SEQSRQDCEAICKLGL 101 (423)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC---TTS-------------------------------CHHHHHHHHHHHTSCC
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEee---ccc-------------------------------CHHHHHHHHHHHhcCC
Confidence 578999999999999999999998642 111 0112334444544322
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
...+. ...++ +.+-++...++ |+..|++-+=+.+......+++. ...+.+.+.++.+++. |+.+..+..-
T Consensus 102 ~~~v~-~~~r~---~~~di~~A~~a--G~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~V~~~~ed 173 (423)
T 3ivs_A 102 KCKIL-THIRC---HMDDARVAVET--GVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSK--GIEVRFSSED 173 (423)
T ss_dssp SSEEE-EEEES---CHHHHHHHHHT--TCSEEEEEEEC-------------CHHHHHHHHHHHHHHTT--TCEEEEEEES
T ss_pred CCEEE-Eeecc---ChhhHHHHHHc--CCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEcc
Confidence 22221 11122 34446666677 99998887644332222233332 2367778889999999 8888887776
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
++ .-+++.+.+.++.+.+.+.+.+.+
T Consensus 174 a~-r~d~~~~~~v~~~~~~~Ga~~i~l 199 (423)
T 3ivs_A 174 SF-RSDLVDLLSLYKAVDKIGVNRVGI 199 (423)
T ss_dssp GG-GSCHHHHHHHHHHHHHHCCSEEEE
T ss_pred Cc-CCCHHHHHHHHHHHHHhCCCcccc
Confidence 66 457788888888888889887654
No 31
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=82.07 E-value=8.6 Score=31.89 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+ ...+|+|++.. . -.....++...+++ .
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~-~-~~~~g~~~~~~l~~------------------~ 72 (142)
T 2qxy_A 13 SRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-F-EGEESLNLIRRIRE------------------E 72 (142)
T ss_dssp CHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-T-TTHHHHHHHHHHHH------------------H
T ss_pred CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC-C-CCCcHHHHHHHHHH------------------H
Confidence 455677888888888997531 11 14689999976 3 22222233333332 1
Q ss_pred CCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 159 KHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 159 ~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
.++.+|++....... .....++ ....|++..+-....|.+.+..+..+.
T Consensus 73 ~~~~pii~ls~~~~~~~~~~~~~-~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 73 FPDTKVAVLSAYVDKDLIINSVK-AGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CTTCEEEEEESCCCHHHHHHHHH-HTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEECCCCHHHHHHHHH-CCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 356666654433332 2233443 345688888877667777776655443
No 32
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=81.80 E-value=6.5 Score=42.46 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=55.6
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeeccCC---C----------CCCcEEEEeeccCcchHHHHHHHHHHHHHH
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVINV---P----------ENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~---~----------~~aDvv~intc~v~~~a~~~~~~~l~~~~~ 142 (524)
.++|.+.|.+=-.--.=..++...|+.+||+++.-. + .++|+|++++ +.+. ....+...++++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~-l~t~-~~~~m~~~i~~L-- 173 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSG-LITP-SLDEMVNVAKEM-- 173 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEEC-CSTH-HHHHHHHHHHHH--
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEe-cCCC-CHHHHHHHHHHH--
Confidence 345555543222222237889999999999863111 1 4899999955 3333 233344455444
Q ss_pred hhhhhhhcccccccccCCCCEEEEEcccccccHH--HHHhhCCcceEEEC
Q 041524 143 LKREWKKNVATGRSQSKHPPKIVVLGCMAERLKD--KILDADKMVDVVCG 190 (524)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e--~~l~~~~~vD~Vv~ 190 (524)
+ +..++++|+|||..++.... ++-..+.++|+.+.
T Consensus 174 -r------------~~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 174 -E------------RQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp -H------------HTTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred -H------------HcCCCCeEEEEccccchhhhhhhhhhcccCCeEEEC
Confidence 1 12357899999987665322 22222345775543
No 33
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=81.09 E-value=17 Score=34.71 Aligned_cols=134 Identities=11% Similarity=0.032 Sum_probs=82.0
Q ss_pred cccCChHHHHHHHHHHHHCCCc--EEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHh
Q 041524 260 ERSRPVESIVKEVDELWKEGVK--EVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSL 337 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~k--ei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~ 337 (524)
.-+.+..++.+|++.+.+.|++ ++-+.|..|--. ++ .+. .+++.+.+
T Consensus 34 ilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpn-----------------it-----------~G~---~~v~~lr~ 82 (246)
T 3inp_A 34 ILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPN-----------------LT-----------FGP---MVLKALRD 82 (246)
T ss_dssp GGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC-----------------BC-----------CCH---HHHHHHHH
T ss_pred hhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcc-----------------hh-----------cCH---HHHHHHHH
Confidence 4567788899999999998887 555677665311 00 012 34444444
Q ss_pred hCCc--eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Q 041524 338 EFPE--MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSD 415 (524)
Q Consensus 338 ~~~~--~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~ 415 (524)
..+. +.+.+...+| +..++.++++ |+..+++..|+.. ...+.++.+|+. |+.+...
T Consensus 83 ~~p~~~ldvHLmv~~p----~~~i~~~~~a--GAd~itvH~Ea~~--------------~~~~~i~~ir~~--G~k~Gva 140 (246)
T 3inp_A 83 YGITAGMDVHLMVKPV----DALIESFAKA--GATSIVFHPEASE--------------HIDRSLQLIKSF--GIQAGLA 140 (246)
T ss_dssp HTCCSCEEEEEECSSC----HHHHHHHHHH--TCSEEEECGGGCS--------------CHHHHHHHHHTT--TSEEEEE
T ss_pred hCCCCeEEEEEeeCCH----HHHHHHHHHc--CCCEEEEccccch--------------hHHHHHHHHHHc--CCeEEEE
Confidence 4322 3444443344 6689999998 9999999999753 256778888888 8876665
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 416 FICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 416 fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
+-.+.|- +.++..++ .+|.+. ..+..||..-
T Consensus 141 lnp~Tp~---e~l~~~l~-----~vD~Vl--vMsV~PGfgG 171 (246)
T 3inp_A 141 LNPATGI---DCLKYVES-----NIDRVL--IMSVNPGFGG 171 (246)
T ss_dssp ECTTCCS---GGGTTTGG-----GCSEEE--EECSCTTC--
T ss_pred ecCCCCH---HHHHHHHh-----cCCEEE--EeeecCCCCC
Confidence 5433333 33332222 367543 4577888743
No 34
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=79.91 E-value=19 Score=35.09 Aligned_cols=146 Identities=16% Similarity=0.245 Sum_probs=90.3
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+++.+++.++.+.+.|..-|-+-++...- |... + ...+...++..+++.+.+..
T Consensus 33 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestrP-------------ga~~--------v-~~~eE~~rv~pvi~~l~~~~- 89 (282)
T 1aj0_A 33 THNSLIDAVKHANLMINAGATIIDVGGESTRP-------------GAAE--------V-SVEEELQRVIPVVEAIAQRF- 89 (282)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSEEEEESSCCST-------------TCCC--------C-CHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-------------CCCc--------C-CHHHHHHHHHHHHHHHHhhc-
Confidence 45678999999999999999988877654310 1100 0 00112345666777776542
Q ss_pred ceEEEEecCCC------------------CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CC------HH
Q 041524 341 EMRFRYTSPHP------------------KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YT------RE 394 (524)
Q Consensus 341 ~~~ir~~s~~p------------------~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t------~e 394 (524)
...+.+.+.+| ...+++++++++++ ||..+-+..+ |.+ +.|.+. |. .+
T Consensus 90 ~~piSIDT~~~~va~aAl~aGa~iINdvsg~~d~~~~~~~a~~--~~~vVlmh~~-G~p---~tm~~~~~y~d~~~ev~~ 163 (282)
T 1aj0_A 90 EVWISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAET--GLPVCLMHMQ-GNP---KTMQEAPKYDDVFAEVNR 163 (282)
T ss_dssp CCEEEEECCCHHHHHHHHHTTCCEEEETTTTCSTTHHHHHHHH--TCCEEEECCS-SCT---TCCSCCCCCSCHHHHHHH
T ss_pred CCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh--CCeEEEEccC-CCC---ccccccCccchHHHHHHH
Confidence 34455554211 01457888888887 7777766653 333 233322 21 56
Q ss_pred HHHHHHHHHHHhCCCcE---EEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 395 AYLDLVQKIRQIIPDVG---LSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 395 ~~~~~v~~ir~~~pgi~---i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
...+.++.+.++ |+. |..|=-+|| +.|.++-.++++-+.++
T Consensus 164 ~l~~~i~~a~~~--Gi~~~~IilDPg~gf-~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 164 YFIEQIARCEQA--GIAKEKLLLDPGFGF-GKNLSHNYSLLARLAEF 207 (282)
T ss_dssp HHHHHHHHHHHT--TCCGGGEEEECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHc--CCChhhEEEeCCCCc-ccCHHHHHHHHHHHHHH
Confidence 777888888888 885 888988888 77877655555555443
No 35
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=76.99 E-value=15 Score=29.88 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||.+.. .+ ...+|+|++....... . .++.++++ + +.
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~-~---g~~~~~~l---~------------~~ 76 (130)
T 3eod_A 16 EQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM-N---GLKLLEHI---R------------NR 76 (130)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC---------CHHHHHHH---H------------HT
T ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCC-C---HHHHHHHH---H------------hc
Confidence 456678888999999997532 12 1468999996543221 1 23334333 1 11
Q ss_pred CCCCEEE-EEcccccccHHHHHhhCCcceEEECCC-CcccHHHHHHHHhcC
Q 041524 159 KHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPD-AYRDLPRLLEEVDYG 207 (524)
Q Consensus 159 ~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~ge-ge~~l~~Ll~~~~~g 207 (524)
.|..+|+ +.+........+.++ ....|++..+- ....+.+.++.+..+
T Consensus 77 ~~~~~ii~~t~~~~~~~~~~~~~-~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 77 GDQTPVLVISATENMADIAKALR-LGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp TCCCCEEEEECCCCHHHHHHHHH-HCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred CCCCCEEEEEcCCCHHHHHHHHH-cCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 3444454 444433222334444 34567888887 667777777776544
No 36
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=76.88 E-value=3 Score=40.43 Aligned_cols=107 Identities=8% Similarity=0.072 Sum_probs=56.9
Q ss_pred CccEEEEecC-CCCCHHHHHHHHHH--------HHHC-CCeeccCC-------------CCCCcEEEEeeccCcc-h-HH
Q 041524 76 QGRIYQETYG-CQMNVNDMEIVLSI--------MKNA-GYSEVINV-------------PENAEVIFINTCAIRD-Y-AE 130 (524)
Q Consensus 76 ~~~~~~~t~G-C~~N~~d~e~i~~~--------L~~~-Gy~~~~~~-------------~~~aDvv~intc~v~~-~-a~ 130 (524)
.++|-+.+.| ..+.+- ..++... |+.+ ||+++--- ..+||+|++++ +.+. . ..
T Consensus 120 ~~~Vvlatv~gD~HdiG-~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~-l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVG-IDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQ-TVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHH-HHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEEC-CCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHH-HHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEEe-ecCCccchH
Confidence 4456555543 333222 4556656 9999 99863111 15999999954 4343 1 22
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 131 HKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
..+.+.++.+ ++ +...++++|++||...+ + ++..+ -++|.++..-. ...+++..
T Consensus 198 ~~~~~~i~~L---~~----------~g~~~~i~vivGG~~~~--~-~~a~~-iGad~~~~da~--~~~~~a~~ 251 (262)
T 1xrs_B 198 QNMTHLIELL---EA----------EGLRDRFVLLCGGPRIN--N-EIAKE-LGYDAGFGPGR--FADDVATF 251 (262)
T ss_dssp HHHHHHHHHH---HH----------TTCGGGSEEEEECTTCC--H-HHHHT-TTCSEEECTTC--CHHHHHHH
T ss_pred HHHHHHHHHH---Hh----------cCCCCCCEEEEECCcCC--H-HHHHH-cCCeEEECCch--HHHHHHHH
Confidence 3333344333 11 01113489999998643 3 33443 47898876533 34444443
No 37
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=76.78 E-value=3 Score=45.22 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=57.6
Q ss_pred CccEEEEecCCCCCHHHHHH------HHHHHHHCCCeeccCC--------------CCCCcEEEEeeccCcch--HHHHH
Q 041524 76 QGRIYQETYGCQMNVNDMEI------VLSIMKNAGYSEVINV--------------PENAEVIFINTCAIRDY--AEHKV 133 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~------i~~~L~~~Gy~~~~~~--------------~~~aDvv~intc~v~~~--a~~~~ 133 (524)
.+||.+.|.| -...|.-. +...|+.+||+++ .- ..+||+|+|++.. +.. .-..+
T Consensus 602 kGKVVIATVg--GD~HDIGKklVaNIVa~~LE~aGFEVI-DLGvdVPpEeIVeAA~EedADVVGLSsLL-Tt~dihL~~M 677 (763)
T 3kp1_A 602 PLKIVAATVG--EDEHSVGLREVIDIKHGGIEKYGVEVH-YLGTSVPVEKLVDAAIELKADAILASTII-SHDDIHYKNM 677 (763)
T ss_dssp CCEEEEEEBT--TCCCCHHHHHTTSTTTTCGGGGTCEEE-ECCSSBCHHHHHHHHHHTTCSEEEEECCC-CGGGHHHHHH
T ss_pred CCEEEEEeCC--CChhhhhhHHHHHHHHHHHHhCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEeccc-cCchhhHHHH
Confidence 4567776664 12333333 2567999999863 21 1589999996443 331 22223
Q ss_pred HHHHHHHHHhhhhhhhcccccccccC-CCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 134 WQRLNYFWFLKREWKKNVATGRSQSK-HPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 134 ~~~l~~~~~~~~~~~~~~~~~~~~~~-p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.+.+..+ ++ +.. ..++|++||..++ +++.+ .-++|.++.... ...+++..+
T Consensus 678 kevIelL---rE-----------~GlrDkIkVIVGGa~~t---qd~Ak-eIGADa~f~DAT--eAVeVA~~L 729 (763)
T 3kp1_A 678 KRIHELA---VE-----------KGIRDKIMIGCGGTQVT---PEVAV-KQGVDAGFGRGS--KGIHVATFL 729 (763)
T ss_dssp HHHHHHH---HH-----------TTCTTTSEEEEECTTCC---HHHHH-TTTCSEEECTTC--CHHHHHHHH
T ss_pred HHHHHHH---Hh-----------cCCCCCCEEEEECCCCC---HHHHH-HcCCcEEECCcc--hHHHHHHHH
Confidence 3333332 11 112 2478999998765 33433 467998876433 234554443
No 38
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=76.39 E-value=15 Score=36.63 Aligned_cols=145 Identities=10% Similarity=-0.014 Sum_probs=81.3
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
...+.++-++-++.|.+.|++.|.... ... . ...+ +.++++.+..+
T Consensus 23 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~------------~------------------~~d~-e~v~~i~~~~~ 68 (325)
T 3eeg_A 23 CQLNTEEKIIVAKALDELGVDVIEAGF---PVS------------S------------------PGDF-NSVVEITKAVT 68 (325)
T ss_dssp --CCTTHHHHHHHHHHHHTCSEEEEEC---TTS------------C------------------HHHH-HHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCC------------C------------------HhHH-HHHHHHHHhCC
Confidence 467889999999999999999988742 111 0 1122 22344444434
Q ss_pred ceEEEEec-CCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 341 EMRFRYTS-PHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG--YTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 341 ~~~ir~~s-~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
..++..-. .+..++ +..++.+..+ |+..|++-+-+-+-...+.+++. ...+.+.+.++.+++. |..+..+..
T Consensus 69 ~~~i~~l~r~~~~~i-~~a~~al~~a--g~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~~ 143 (325)
T 3eeg_A 69 RPTICALTRAKEADI-NIAGEALRFA--KRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKV--VHEVEFFCE 143 (325)
T ss_dssp SSEEEEECCSCHHHH-HHHHHHHTTC--SSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTT--SSEEEEEEE
T ss_pred CCEEEEeecCCHHHH-HHHHHhhccc--CCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEcc
Confidence 44443221 222111 2334556566 88888875544333344445543 4678888899999998 876543333
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+. --+++.+.+.++.+.+.+.+.+.+
T Consensus 144 d~~-~~~~~~~~~~~~~~~~~G~~~i~l 170 (325)
T 3eeg_A 144 DAG-RADQAFLARMVEAVIEAGADVVNI 170 (325)
T ss_dssp TGG-GSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred ccc-cchHHHHHHHHHHHHhcCCCEEEe
Confidence 222 135566667777777778876543
No 39
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=76.23 E-value=22 Score=29.34 Aligned_cols=98 Identities=6% Similarity=0.076 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC-----------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV-----------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~-----------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
|....+.+...|.+.||++.. .+ ...+|+|++....... ...++.+.+++.
T Consensus 12 ~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~-~g~~~~~~l~~~---------------- 74 (143)
T 3jte_A 12 ESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKL-SGMDILREIKKI---------------- 74 (143)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSS-CHHHHHHHHHHH----------------
T ss_pred CHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCC-cHHHHHHHHHHh----------------
Confidence 456678888899999997531 11 2478999997654332 233344444322
Q ss_pred ccCCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHhc
Q 041524 157 QSKHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
.|..+|++.....+. .....++ ....|++..+-....+...+..+..
T Consensus 75 --~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 75 --TPHMAVIILTGHGDLDNAILAMK-EGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp --CTTCEEEEEECTTCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred --CCCCeEEEEECCCCHHHHHHHHH-hCcceeEeCCCCHHHHHHHHHHHHH
Confidence 366666655444332 2233443 4556888888666666666665543
No 40
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=75.67 E-value=30 Score=28.40 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHH-CCCeecc-CC---------C-CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 89 NVNDMEIVLSIMKN-AGYSEVI-NV---------P-ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 89 N~~d~e~i~~~L~~-~Gy~~~~-~~---------~-~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
|....+.+...|.+ .||++.. .+ . ..+|+|++...........++.+.+++.
T Consensus 13 ~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~---------------- 76 (140)
T 3lua_A 13 FEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNN---------------- 76 (140)
T ss_dssp CHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHS----------------
T ss_pred CHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhC----------------
Confidence 45567788889998 8997531 11 2 4689999964432022233333333320
Q ss_pred ccCCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 157 QSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 157 ~~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
...+..+|+ +.+..-.....+.++ ....|++..+-....|.+.++.+..+.
T Consensus 77 ~~~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 77 SRTANTPVIIATKSDNPGYRHAALK-FKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp GGGTTCCEEEEESCCCHHHHHHHHH-SCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHH-cCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 013455555 444432223334443 456789999888888888888776554
No 41
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=75.06 E-value=26 Score=35.65 Aligned_cols=138 Identities=9% Similarity=-0.040 Sum_probs=85.3
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
.+.+.++.++=++.|.+.|++.|.... ... .....+.++.+.+...
T Consensus 20 ~~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~-------------------------------~~~~~~~~~~i~~~~~ 65 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDEFGIEYIEVTT---PVA-------------------------------SPQSRKDAEVLASLGL 65 (382)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC---TTS-------------------------------CHHHHHHHHHHHTSCC
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEcC---CcC-------------------------------CHHHHHHHHHHHhcCC
Confidence 467889999999999888999988742 111 0123355555655433
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCH----HHHHHHHHHHHHhCCC--cEEEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTR----EAYLDLVQKIRQIIPD--VGLSS 414 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~----e~~~~~v~~ir~~~pg--i~i~~ 414 (524)
...+-.. .++ ..+-++...++ |...+++-+ +.|+-..+.++ .|. +.+.+.++.+++. | +.+..
T Consensus 66 ~~~v~~~-~r~---~~~di~~a~~~--g~~~v~i~~-~~s~~~~~~~~--~s~~e~l~~~~~~v~~ak~~--g~~~~v~~ 134 (382)
T 2ztj_A 66 KAKVVTH-IQC---RLDAAKVAVET--GVQGIDLLF-GTSKYLRAPHG--RDIPRIIEEAKEVIAYIREA--APHVEVRF 134 (382)
T ss_dssp SSEEEEE-EES---CHHHHHHHHHT--TCSEEEEEE-CC--------C--CCHHHHHHHHHHHHHHHHHH--CTTSEEEE
T ss_pred CcEEEEE-ccc---ChhhHHHHHHc--CCCEEEEEe-ccCHHHHHHhC--CCHHHHHHHHHHHHHHHHHc--CCCEEEEE
Confidence 3332111 111 23446777777 999888866 45554444333 344 5578888999999 7 88887
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 415 DFICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 415 ~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
++.-++ .-+.+.+.+.++.+.+. .+.+.+
T Consensus 135 ~~ed~~-~~~~~~~~~~~~~~~~~-a~~i~l 163 (382)
T 2ztj_A 135 SAEDTF-RSEEQDLLAVYEAVAPY-VDRVGL 163 (382)
T ss_dssp EETTTT-TSCHHHHHHHHHHHGGG-CSEEEE
T ss_pred EEEeCC-CCCHHHHHHHHHHHHHh-cCEEEe
Confidence 776554 45677788888888888 776655
No 42
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=75.06 E-value=22 Score=33.20 Aligned_cols=77 Identities=17% Similarity=0.051 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHH
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLM 435 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l 435 (524)
++.++.++++ |+..|.+.... +.-..+.++..++.+.+++. |+.+.+--... .++.+.+++.++++
T Consensus 33 ~~~l~~~~~~--G~~~vEl~~~~--------~~~~~~~~~~~~~~~~l~~~--gl~i~~~~~~~--~~~~~~~~~~i~~A 98 (257)
T 3lmz_A 33 DTTLKTLERL--DIHYLCIKDFH--------LPLNSTDEQIRAFHDKCAAH--KVTGYAVGPIY--MKSEEEIDRAFDYA 98 (257)
T ss_dssp HHHHHHHHHT--TCCEEEECTTT--------SCTTCCHHHHHHHHHHHHHT--TCEEEEEEEEE--ECSHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCEEEEeccc--------CCCCCCHHHHHHHHHHHHHc--CCeEEEEeccc--cCCHHHHHHHHHHH
Confidence 6788888888 88888877652 11234566677777777777 77765322111 17788888888888
Q ss_pred HHcCCCeEEEE
Q 041524 436 KAVGYDMAYMF 446 (524)
Q Consensus 436 ~~l~~d~~~i~ 446 (524)
.+++...+.+.
T Consensus 99 ~~lGa~~v~~~ 109 (257)
T 3lmz_A 99 KRVGVKLIVGV 109 (257)
T ss_dssp HHHTCSEEEEE
T ss_pred HHhCCCEEEec
Confidence 88888877653
No 43
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=74.80 E-value=24 Score=28.51 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+. ..+|+|++........ ..++.+.+++. ..
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~-g~~~~~~l~~~----------------~~ 77 (132)
T 3lte_A 15 DQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLD-GLDVIRSLRQN----------------KV 77 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBC-HHHHHHHHHTT----------------TC
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCC-HHHHHHHHHhc----------------Cc
Confidence 456677888899999997532 111 4789999976544332 23344433321 11
Q ss_pred CCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
.+..+|++.+........+.++. ...|++..+-....+.+.+.....+
T Consensus 78 ~~~~~ii~~~~~~~~~~~~~~~~-g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 78 ANQPKILVVSGLDKAKLQQAVTE-GADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp SSCCEEEEECCSCSHHHHHHHHH-TCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred cCCCeEEEEeCCChHHHHHHHHh-ChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 14466666655444334445543 4567888876665555555554433
No 44
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=74.61 E-value=25 Score=28.62 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CC-CcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------EN-AEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~-aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|.+.||++.. .+. .. +|+|++....... ...++.+.+++ .
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~-~g~~~~~~l~~-----------------~ 77 (136)
T 3hdv_A 16 NAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPE-SGLDLIRTIRA-----------------S 77 (136)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSS-CHHHHHHHHHT-----------------S
T ss_pred CHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCC-CHHHHHHHHHh-----------------c
Confidence 556678888999999997532 111 23 8999996544332 22333333321 1
Q ss_pred cCCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 158 SKHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
..+..+|++....... ...+.++ ....|++..+-....|...++.+..|.
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 78 ERAALSIIVVSGDTDVEEAVDVMH-LGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp TTTTCEEEEEESSCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CCCCCCEEEEeCCCChHHHHHHHh-CCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 1356666654433332 2334443 456788888877777777777665543
No 45
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=73.96 E-value=20 Score=29.67 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC----------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV----------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~----------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|.+.||++.. .+ ...+|+|++...........++.+.+++.
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~----------------- 76 (140)
T 3h5i_A 14 SKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI----------------- 76 (140)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-----------------
T ss_pred CHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-----------------
Confidence 456678888999999997531 11 14689999976543222333344444321
Q ss_pred cCCCCEE-EEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 158 SKHPPKI-VVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 158 ~~p~~~I-vvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
|+.+| ++.+..........++ ....|++..+-....|.+.+..+
T Consensus 77 --~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~ 121 (140)
T 3h5i_A 77 --SELPVVFLTAHTEPAVVEKIRS-VTAYGYVMKSATEQVLITIVEMA 121 (140)
T ss_dssp --CCCCEEEEESSSSCCCCGGGGG-SCEEEEEETTCCHHHHHHHHHHH
T ss_pred --CCCCEEEEECCCCHHHHHHHHh-CCCcEEEeCCCCHHHHHHHHHHH
Confidence 34444 4555443333344444 35567888886666666555544
No 46
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=73.75 E-value=31 Score=36.83 Aligned_cols=141 Identities=11% Similarity=0.057 Sum_probs=85.6
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE 341 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 341 (524)
..+.++.++-++.|.+.|++.|...+...... .+. |. ...-.+.++.+.+..+.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~--------------~~r----fl--------~~d~~e~lr~l~~~~~~ 96 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDS--------------CIR----FL--------NEDPWERLRTFRKLMPN 96 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHH--------------HHH----TS--------CCCHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCccccccc--------------chh----cc--------CCCHHHHHHHHHHhCCC
Confidence 46778888888888888999998875321000 000 00 00123334444443333
Q ss_pred eEEEEec--C-------CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEE
Q 041524 342 MRFRYTS--P-------HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGL 412 (524)
Q Consensus 342 ~~ir~~s--~-------~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i 412 (524)
..+..-. . .|+++.+..++...++ |...+++-. +.|+ .+.+.+.++.+++. |..+
T Consensus 97 ~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~a--Gvd~vrIf~-s~sd-----------~~ni~~~i~~ak~~--G~~v 160 (539)
T 1rqb_A 97 SRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAEN--GMDVFRVFD-AMND-----------PRNMAHAMAAVKKA--GKHA 160 (539)
T ss_dssp SCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHT--TCCEEEECC-TTCC-----------THHHHHHHHHHHHT--TCEE
T ss_pred CEEEEEeccccccCcccCcccccHHHHHHHHhC--CCCEEEEEE-ehhH-----------HHHHHHHHHHHHHC--CCeE
Confidence 3332211 1 1233346677888888 888888753 2232 25678899999999 8877
Q ss_pred EEeE--EEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 413 SSDF--ICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 413 ~~~f--I~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
...| ..| |.-+.+.+.+.++.+.+.+.+.+.+
T Consensus 161 ~~~i~~~~~-~~~~~e~~~~~a~~l~~~Gad~I~L 194 (539)
T 1rqb_A 161 QGTICYTIS-PVHTVEGYVKLAGQLLDMGADSIAL 194 (539)
T ss_dssp EEEEECCCS-TTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEeeeC-CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 6555 445 4457888888999999999886655
No 47
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=73.64 E-value=30 Score=33.64 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=86.4
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+++.+++.++.+.+.|..-|-+-++.... |.+. + ...+--.++..+++.+.+.
T Consensus 24 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestrp-------------ga~~--------v-~~~eE~~Rv~pvi~~l~~~-- 79 (280)
T 1eye_A 24 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSRP-------------GATR--------V-DPAVETSRVIPVVKELAAQ-- 79 (280)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC------------------------------------HHHHHHHHHHHHHT--
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCccCCC-------------CCCC--------C-CHHHHHHHHHHHHHHhhcC--
Confidence 45689999999999999999988877644211 1000 0 0011124566666766543
Q ss_pred ceEEEEecC-------------------CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC---C-C-----
Q 041524 341 EMRFRYTSP-------------------HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG---Y-T----- 392 (524)
Q Consensus 341 ~~~ir~~s~-------------------~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~---~-t----- 392 (524)
...+.+.+. .....+++++++++++ ||..+-+..+ |.++ .|.+. | +
T Consensus 80 ~~piSIDT~~~~va~aAl~aGa~iINdvsg~~~d~~m~~~~a~~--~~~vVlmh~~-G~p~---tm~~~~~~y~dv~~~v 153 (280)
T 1eye_A 80 GITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEA--DVPWVLMHWR-AVSA---DTPHVPVRYGNVVAEV 153 (280)
T ss_dssp TCCEEEECSCHHHHHHHHHTTCCEEEETTTTSSCTTHHHHHHHH--TCCEEEECCC-CSCT---TCTTSCCCCSSHHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHh--CCeEEEEcCC-CCCc---chhhcCcchhHHHHHH
Confidence 334444442 2222367788888888 7777766653 2221 23221 2 1
Q ss_pred HHHHHHHHHHHHHhCCCcE---EEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 393 REAYLDLVQKIRQIIPDVG---LSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 393 ~e~~~~~v~~ir~~~pgi~---i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
.+.+.+.++.+.++ |+. |..|=-+|| +.|.++-.++++-+.++
T Consensus 154 ~~~l~~~i~~a~~~--Gi~~~~IilDPg~Gf-~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 154 RADLLASVADAVAA--GVDPARLVLDPGLGF-AKTAQHNWAILHALPEL 199 (280)
T ss_dssp HHHHHHHHHHHHHT--TCCGGGEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHc--CCChhhEEEECCCCc-ccCHHHHHHHHHHHHHh
Confidence 56677888888888 886 888888898 56776655565555544
No 48
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=73.36 E-value=31 Score=36.12 Aligned_cols=140 Identities=12% Similarity=0.106 Sum_probs=81.6
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEecc-CCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQN-VNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n-~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
..+.++.++=++.|.+.|+..|...+.. |.+- +. |. ...-.+.++.+.+..+
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~---------------~r----~~--------~~d~~e~l~~i~~~~~ 78 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSC---------------IR----FL--------GEDPWQRLRLLKQAMP 78 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHH---------------HH----TT--------CCCHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccch---------------hh----cc--------CCCHHHHHHHHHHhCC
Confidence 4567777777788888899998876532 1000 00 00 0112333444444333
Q ss_pred ceEEEEec--C-------CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcE
Q 041524 341 EMRFRYTS--P-------HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG 411 (524)
Q Consensus 341 ~~~ir~~s--~-------~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~ 411 (524)
...+..-. . .|+++.+..++...++ |...+++-.- .|+ .+.+.+.++.+++. |..
T Consensus 79 ~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~--Gvd~i~if~~-~sd-----------~~ni~~~i~~ak~~--G~~ 142 (464)
T 2nx9_A 79 NTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKN--GMDVFRVFDA-MND-----------VRNMQQALQAVKKM--GAH 142 (464)
T ss_dssp SSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHT--TCCEEEECCT-TCC-----------THHHHHHHHHHHHT--TCE
T ss_pred CCeEEEEeccccccCcccccchhhHHHHHHHHhC--CcCEEEEEEe-cCH-----------HHHHHHHHHHHHHC--CCE
Confidence 33322111 1 1222335567777777 8888776532 222 25677888888888 877
Q ss_pred EEEeE--EEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 412 LSSDF--ICGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 412 i~~~f--I~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
+..++ ..|. --+.+.+.+.++.+.+.+.+.+.+
T Consensus 143 v~~~i~~~~~~-~~~~e~~~~~a~~l~~~Gad~I~l 177 (464)
T 2nx9_A 143 AQGTLCYTTSP-VHNLQTWVDVAQQLAELGVDSIAL 177 (464)
T ss_dssp EEEEEECCCCT-TCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEeeeCC-CCCHHHHHHHHHHHHHCCCCEEEE
Confidence 76665 3343 347888888888888888886655
No 49
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=72.90 E-value=16 Score=30.15 Aligned_cols=100 Identities=7% Similarity=0.008 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcc-hHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRD-YAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
+....+.+...|.+.||++.. .+ ...+|+|++....... ....++.+.+++
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~------------------ 76 (136)
T 3kto_A 15 QKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVK------------------ 76 (136)
T ss_dssp CHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHh------------------
Confidence 455667888889888997531 11 1468999996543220 223333333332
Q ss_pred cCCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 158 SKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 158 ~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
..+..+|+ +.|........+.++ ....|++..+-....+.+.++.+..+
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~~~~-~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 77 RGFHLPTIVMASSSDIPTAVRAMR-ASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp TTCCCCEEEEESSCCHHHHHHHHH-TTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHH-cChHHheeCCCCHHHHHHHHHHHHhc
Confidence 12555554 455433323334443 45678888886666666666655443
No 50
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=72.81 E-value=24 Score=29.62 Aligned_cols=98 Identities=8% Similarity=0.111 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|...||++.. .+ ...+|+|++....... ...++...+++.
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~-~g~~~~~~l~~~------------------ 72 (155)
T 1qkk_A 12 DRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGM-DGLALFRKILAL------------------ 72 (155)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSS-CHHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCC-CHHHHHHHHHhh------------------
Confidence 455677888899999997531 11 1468999997654332 233344444321
Q ss_pred CCCCEEEEEccccc-ccHHHHHhhCCcceEEECCCCcccHHHHHHHHhc
Q 041524 159 KHPPKIVVLGCMAE-RLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 159 ~p~~~IvvgG~~at-~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
.|..+|++...... ......++ ....|++..+-....+...+..+..
T Consensus 73 ~~~~pii~ls~~~~~~~~~~~~~-~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 73 DPDLPMILVTGHGDIPMAVQAIQ-DGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp CTTSCEEEEECGGGHHHHHHHHH-TTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHh-cCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 35555554433333 22233433 4557888888666666666655443
No 51
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=72.33 E-value=35 Score=27.29 Aligned_cols=96 Identities=9% Similarity=0.032 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
....+.+...|...||++.. .+ ...+|+|++........ ..++.+.+++ ..
T Consensus 13 ~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~-g~~~~~~l~~------------------~~ 73 (126)
T 1dbw_A 13 EPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMS-GVELLRNLGD------------------LK 73 (126)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSC-HHHHHHHHHH------------------TT
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCC-HHHHHHHHHh------------------cC
Confidence 44567778888888987521 11 13689999975443322 2233333332 12
Q ss_pred CCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 160 HPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 160 p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
|..+|+ +.+..........++ ....|++..+-....+.+.++.+.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (126)
T 1dbw_A 74 INIPSIVITGHGDVPMAVEAMK-AGAVDFIEKPFEDTVIIEAIERAS 119 (126)
T ss_dssp CCCCEEEEECTTCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHH-hCHHHheeCCCCHHHHHHHHHHHH
Confidence 555554 455433222334444 455789988866666666665544
No 52
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=71.66 E-value=22 Score=29.09 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCc----chHHHHHHHHHHHHHHhhhhhhhccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIR----DYAEHKVWQRLNYFWFLKREWKKNVATG 154 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 154 (524)
|....+.+...|.+.||++.. .+. ..+|+|++...... .....++.+.+++.
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~-------------- 77 (140)
T 2qr3_A 12 NKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ-------------- 77 (140)
T ss_dssp CHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh--------------
Confidence 455567788888888987531 111 36899999754320 21222333333321
Q ss_pred ccccCCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 155 RSQSKHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 155 ~~~~~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
.+..+|++....... .....++ ....|++..+-....+.+.+..+..+.
T Consensus 78 ----~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 78 ----YRDLPVVLFTAYADIDLAVRGIK-EGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp ----CTTCCEEEEEEGGGHHHHHHHHH-TTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred ----CcCCCEEEEECCCCHHHHHHHHH-cCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 355555544333332 2233433 455688888766666666666655443
No 53
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=71.40 E-value=33 Score=28.31 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=60.2
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCC-Ceecc-CC----------C-CCCcEEEEeeccCcchHHHHHHHHHHHHHH
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAG-YSEVI-NV----------P-ENAEVIFINTCAIRDYAEHKVWQRLNYFWF 142 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~G-y~~~~-~~----------~-~~aDvv~intc~v~~~a~~~~~~~l~~~~~ 142 (524)
..+|.++. -+....+.+...|.+.| |+++. .+ . ..+|+|++..... .....++.+.+++
T Consensus 20 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~--- 91 (146)
T 4dad_A 20 MINILVAS----EDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAAL-DTAELAAIEKLSR--- 91 (146)
T ss_dssp GCEEEEEC----SCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTC-CHHHHHHHHHHHH---
T ss_pred CCeEEEEe----CCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCC-CccHHHHHHHHHH---
Confidence 34566643 34566788889999999 87531 11 1 5689999965432 2223333333332
Q ss_pred hhhhhhhcccccccccCCCCEEEEEccccc-ccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 143 LKREWKKNVATGRSQSKHPPKIVVLGCMAE-RLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 143 ~~~~~~~~~~~~~~~~~p~~~IvvgG~~at-~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
..|..+|++...... ....+.++ ....|++..+-....|...+..+..+
T Consensus 92 ---------------~~~~~~ii~lt~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 92 ---------------LHPGLTCLLVTTDASSQTLLDAMR-AGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp ---------------HCTTCEEEEEESCCCHHHHHHHHT-TTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred ---------------hCCCCcEEEEeCCCCHHHHHHHHH-hCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 135666665443333 22233443 45567888886666666666655443
No 54
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=70.84 E-value=57 Score=30.80 Aligned_cols=75 Identities=9% Similarity=-0.040 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCC------CCC-----
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFC------GET----- 424 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~P------gET----- 424 (524)
++.++.++++ |+..|.+..... ...+.++..++-+.+++. |+.+.+ +.|++ +.+
T Consensus 20 ~~~l~~~~~~--G~~~vEl~~~~~---------~~~~~~~~~~~~~~l~~~--gl~i~~--~~~~~~~~~l~~~d~~~r~ 84 (294)
T 3vni_A 20 KYYIEKVAKL--GFDILEIAASPL---------PFYSDIQINELKACAHGN--GITLTV--GHGPSAEQNLSSPDPDIRK 84 (294)
T ss_dssp HHHHHHHHHH--TCSEEEEESTTG---------GGCCHHHHHHHHHHHHHT--TCEEEE--EECCCGGGCTTCSCHHHHH
T ss_pred HHHHHHHHHc--CCCEEEecCccc---------CCcCHHHHHHHHHHHHHc--CCeEEE--eecCCCCcCCCCCCHHHHH
Confidence 7899999998 999999987641 124677788888888898 998876 23322 122
Q ss_pred --HHHHHHHHHHHHHcCCCeEEE
Q 041524 425 --EEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 425 --~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+.+++.++++.+++...+.+
T Consensus 85 ~~~~~~~~~i~~a~~lG~~~v~~ 107 (294)
T 3vni_A 85 NAKAFYTDLLKRLYKLDVHLIGG 107 (294)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeeec
Confidence 356777888899999987753
No 55
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=70.77 E-value=36 Score=32.90 Aligned_cols=140 Identities=9% Similarity=0.035 Sum_probs=81.1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+.+.+++.++.+.+.|..-|-+-++... . +...++..+++.+.+..
T Consensus 29 ~~~~~~~a~~~a~~~v~~GAdiIDIg~~s~~---------------~---------------eE~~rv~~vi~~l~~~~- 77 (271)
T 2yci_X 29 LNKDPRPIQEWARRQAEKGAHYLDVNTGPTA---------------D---------------DPVRVMEWLVKTIQEVV- 77 (271)
T ss_dssp HTTCCHHHHHHHHHHHHTTCSEEEEECCSCS---------------S---------------CHHHHHHHHHHHHHHHC-
T ss_pred hhCCHHHHHHHHHHHHHCCCCEEEEcCCcCc---------------h---------------hHHHHHHHHHHHHHHhC-
Confidence 4467899999999999999987776654310 0 11345777777776643
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceee-cCcCCcC--HHHHhh----------hC---CC--CC----HHHHHH
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIH-LPAQTGN--SAVLER----------MR---RG--YT----REAYLD 398 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~-igiESgs--~~vL~~----------m~---R~--~t----~e~~~~ 398 (524)
...+.+.+. +.++++.--++-.|...|. +..+. + ++++.. |. +| .+ .+...+
T Consensus 78 ~~pisIDT~-----~~~v~~aal~a~~Ga~iINdvs~~~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~ 151 (271)
T 2yci_X 78 DLPCCLDST-----NPDAIEAGLKVHRGHAMINSTSADQ-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAME 151 (271)
T ss_dssp CCCEEEECS-----CHHHHHHHHHHCCSCCEEEEECSCH-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHH
T ss_pred CCeEEEeCC-----CHHHHHHHHHhCCCCCEEEECCCCc-cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHH
Confidence 234555443 3333333222211222221 22221 2 233322 11 11 23 455667
Q ss_pred HHHHHHHhCCCcE---EEEeEEEcCCCCCHHHHHHHHHHHHHcC
Q 041524 399 LVQKIRQIIPDVG---LSSDFICGFCGETEEEHADTLTLMKAVG 439 (524)
Q Consensus 399 ~v~~ir~~~pgi~---i~~~fI~G~PgET~ed~~~tl~~l~~l~ 439 (524)
.++.+.++ |+. |..|=.+||.|-+.+.-.++++-++.++
T Consensus 152 ~~~~a~~~--Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~~ 193 (271)
T 2yci_X 152 LVANADAH--GIPMTELYIDPLILPVNVAQEHAVEVLETIRQIK 193 (271)
T ss_dssp HHHHHHHT--TCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHC--CCCcccEEEecCCCccccCHHHHHHHHHHHHHHH
Confidence 77888888 886 8999999998888876666666666653
No 56
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=70.65 E-value=21 Score=33.42 Aligned_cols=134 Identities=8% Similarity=0.049 Sum_probs=75.7
Q ss_pred cCChHHHHHHHHHHHHCCCcEEE--EEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 262 SRPVESIVKEVDELWKEGVKEVT--LLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~--l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
+-+..++.++++.+.+.|++.+. +.|..|-.. ++ .-.++++.+.+..
T Consensus 13 a~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~-----------------~~--------------~g~~~v~~lr~~~ 61 (230)
T 1tqj_A 13 SADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN-----------------IT--------------IGPLIVDAIRPLT 61 (230)
T ss_dssp GSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-----------------BC--------------BCHHHHHHHGGGC
T ss_pred ecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcc-----------------hh--------------hhHHHHHHHHhhc
Confidence 44577888999999888988654 444333211 00 0125666666643
Q ss_pred C-ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 340 P-EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 340 ~-~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
. .+.+.+...+| +..++.+.++ |+..++++.|+.. .+...+.++.+++. |+.+...+
T Consensus 62 ~~~~~vhlmv~dp----~~~i~~~~~a--Gadgv~vh~e~~~------------~~~~~~~~~~i~~~--g~~~gv~~-- 119 (230)
T 1tqj_A 62 KKTLDVHLMIVEP----EKYVEDFAKA--GADIISVHVEHNA------------SPHLHRTLCQIREL--GKKAGAVL-- 119 (230)
T ss_dssp CSEEEEEEESSSG----GGTHHHHHHH--TCSEEEEECSTTT------------CTTHHHHHHHHHHT--TCEEEEEE--
T ss_pred CCcEEEEEEccCH----HHHHHHHHHc--CCCEEEECccccc------------chhHHHHHHHHHHc--CCcEEEEE--
Confidence 2 23444544444 4577888888 9999999988321 12345677788887 87655544
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChh
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHA 456 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~ 456 (524)
-|+...+.++..+ . ..|++ ...+..|||--
T Consensus 120 -~p~t~~e~~~~~~----~-~~D~v--~~msv~pg~gg 149 (230)
T 1tqj_A 120 -NPSTPLDFLEYVL----P-VCDLI--LIMSVNPGFGG 149 (230)
T ss_dssp -CTTCCGGGGTTTG----G-GCSEE--EEESSCC----
T ss_pred -eCCCcHHHHHHHH----h-cCCEE--EEEEeccccCC
Confidence 3554433332221 1 46744 44566777653
No 57
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=70.31 E-value=21 Score=30.18 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+ ...+|+|++........ ..++.+.+++. ..
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~-g~~~~~~lr~~----------------~~ 78 (154)
T 3gt7_A 16 SPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMD-GYALCRWLKGQ----------------PD 78 (154)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSC-HHHHHHHHHHS----------------TT
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCC-HHHHHHHHHhC----------------CC
Confidence 566778888999999997531 11 14689999976543332 23344444321 11
Q ss_pred CCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 159 KHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 159 ~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
.+..+|+ +.+........+.++ ....|++..+-....+...+..+..+
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 79 LRTIPVILLTILSDPRDVVRSLE-CGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TTTSCEEEEECCCSHHHHHHHHH-HCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCChHHHHHHHH-CCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 2444444 555433333334444 35578898887776777666665544
No 58
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=70.11 E-value=32 Score=34.79 Aligned_cols=145 Identities=12% Similarity=0.014 Sum_probs=79.5
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
.+.+.++-++=++.|.+.|++.|..... .. . ...+. .++++.+..+
T Consensus 29 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p---~~------------~------------------~~d~e-~v~~i~~~~~ 74 (370)
T 3rmj_A 29 AAMTKEEKIRVARQLEKLGVDIIEAGFA---AA------------S------------------PGDFE-AVNAIAKTIT 74 (370)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEEEEG---GG------------C------------------HHHHH-HHHHHHTTCS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeCC---CC------------C------------------HHHHH-HHHHHHHhCC
Confidence 5689999999999999999998876421 11 0 11222 2333433333
Q ss_pred ceEEE-EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 341 EMRFR-YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY--TREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 341 ~~~ir-~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
...+. +.-.+..++ +..++.++.+ |...|++-+-+-+-.+.+.+++.. ..+.+.+.++.+++. |..+..+..
T Consensus 75 ~~~i~~l~r~~~~di-~~a~~al~~a--g~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~e 149 (370)
T 3rmj_A 75 KSTVCSLSRAIERDI-RQAGEAVAPA--PKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREY--TDDVEFSCE 149 (370)
T ss_dssp SSEEEEEEESSHHHH-HHHHHHHTTS--SSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTT--CSCEEEEEE
T ss_pred CCeEEEEecCCHHHH-HHHHHHHhhC--CCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEecC
Confidence 33332 221222111 2233444456 888888866444444455666532 244455566677777 654432222
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+. --+.+.+.+.++.+.+.+.+.+.+
T Consensus 150 d~~-r~~~~~~~~~~~~~~~~Ga~~i~l 176 (370)
T 3rmj_A 150 DAL-RSEIDFLAEICGAVIEAGATTINI 176 (370)
T ss_dssp TGG-GSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCC-ccCHHHHHHHHHHHHHcCCCEEEe
Confidence 221 235566667777777788887654
No 59
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=69.85 E-value=19 Score=33.85 Aligned_cols=132 Identities=11% Similarity=0.141 Sum_probs=77.5
Q ss_pred ccCChHHHHHHHHHHHHCCCc--EEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 261 RSRPVESIVKEVDELWKEGVK--EVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~k--ei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
-+-+..++-+|++.+.+.|++ ++-+.|..|--. ++ .+. ++++.+.+.
T Consensus 12 l~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn-----------------~~-----------~G~---~~v~~ir~~ 60 (228)
T 3ovp_A 12 LNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPN-----------------IT-----------FGH---PVVESLRKQ 60 (228)
T ss_dssp TTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSC-----------------BC-----------BCH---HHHHHHHHH
T ss_pred eeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcc-----------------cc-----------cCH---HHHHHHHHh
Confidence 456778889999999988887 455567665211 00 012 234444443
Q ss_pred C-C--ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Q 041524 339 F-P--EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSD 415 (524)
Q Consensus 339 ~-~--~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~ 415 (524)
. + .+.+.+...+| +..++.+.++ |+..+++..|+.. ...+.++.+++. |+.+...
T Consensus 61 ~~~~~~~dvhLmv~~p----~~~i~~~~~a--Gad~itvH~Ea~~--------------~~~~~i~~i~~~--G~k~gva 118 (228)
T 3ovp_A 61 LGQDPFFDMHMMVSKP----EQWVKPMAVA--GANQYTFHLEATE--------------NPGALIKDIREN--GMKVGLA 118 (228)
T ss_dssp HCSSSCEEEEEECSCG----GGGHHHHHHH--TCSEEEEEGGGCS--------------CHHHHHHHHHHT--TCEEEEE
T ss_pred hCCCCcEEEEEEeCCH----HHHHHHHHHc--CCCEEEEccCCch--------------hHHHHHHHHHHc--CCCEEEE
Confidence 1 2 23444443444 4578888888 9999999988753 246677788888 8766554
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 416 FICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 416 fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
+- |+...+.+++.+ . .+|.+. ..+..||..
T Consensus 119 l~---p~t~~e~l~~~l---~--~~D~Vl--~msv~pGf~ 148 (228)
T 3ovp_A 119 IK---PGTSVEYLAPWA---N--QIDMAL--VMTVEPGFG 148 (228)
T ss_dssp EC---TTSCGGGTGGGG---G--GCSEEE--EESSCTTTC
T ss_pred Ec---CCCCHHHHHHHh---c--cCCeEE--EeeecCCCC
Confidence 43 433333332222 1 256543 456677763
No 60
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=69.40 E-value=33 Score=32.28 Aligned_cols=132 Identities=9% Similarity=0.111 Sum_probs=80.3
Q ss_pred ccCChHHHHHHHHHHHHCCCcE--EEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 261 RSRPVESIVKEVDELWKEGVKE--VTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~ke--i~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
-+-+..++.+|++.+ +.|+.. +-+.|.+|... ++ .+ ..+++.+.+.
T Consensus 8 la~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn-----------------~t-----------~G---~~~v~~lr~~ 55 (231)
T 3ctl_A 8 MCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPN-----------------LT-----------LS---PFFVSQVKKL 55 (231)
T ss_dssp GGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSC-----------------CC-----------BC---HHHHHHHHTT
T ss_pred hhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCcc-----------------ch-----------hc---HHHHHHHHhc
Confidence 355677888999999 888774 55566554321 00 01 2345555554
Q ss_pred C-CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 339 F-PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 339 ~-~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
. ..+.+.+-..+| +..++.+.++ |+..+++..|+.++ ...+.++.+++. |+.+...+
T Consensus 56 ~~~~~dvhLmv~dp----~~~i~~~~~a--GAd~itvh~Ea~~~-------------~~~~~i~~i~~~--G~k~gv~l- 113 (231)
T 3ctl_A 56 ATKPLDCHLMVTRP----QDYIAQLARA--GADFITLHPETING-------------QAFRLIDEIRRH--DMKVGLIL- 113 (231)
T ss_dssp CCSCEEEEEESSCG----GGTHHHHHHH--TCSEEEECGGGCTT-------------THHHHHHHHHHT--TCEEEEEE-
T ss_pred cCCcEEEEEEecCH----HHHHHHHHHc--CCCEEEECcccCCc-------------cHHHHHHHHHHc--CCeEEEEE-
Confidence 2 234555554454 4567889998 99999998887311 245778888998 88776655
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCCh
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTH 455 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~ 455 (524)
-|+...+.++..++ .+|.+.+ ++..||+-
T Consensus 114 --np~tp~~~~~~~l~-----~~D~Vlv--msV~pGfg 142 (231)
T 3ctl_A 114 --NPETPVEAMKYYIH-----KADKITV--MTVDPGFA 142 (231)
T ss_dssp --CTTCCGGGGTTTGG-----GCSEEEE--ESSCTTCS
T ss_pred --ECCCcHHHHHHHHh-----cCCEEEE--eeeccCcC
Confidence 45544444333222 4675544 57778865
No 61
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=69.30 E-value=40 Score=27.33 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+....+.+...|...||++.. .+ ...+|+|++........ ..++.+.+++.
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~-g~~~~~~l~~~------------------ 72 (132)
T 3crn_A 12 DTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDME-GTELLEKAHKL------------------ 72 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSB-HHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCc-hHHHHHHHHhh------------------
Confidence 345567788888888997531 11 13689999976543322 22334443321
Q ss_pred CCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 159 KHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 159 ~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.+..+|++ .|..........++ ....|++..+-....|...++.+
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~-~ga~~~l~KP~~~~~L~~~i~~~ 118 (132)
T 3crn_A 73 RPGMKKIMVTGYASLENSVFSLN-AGADAYIMKPVNPRDLLEKIKEK 118 (132)
T ss_dssp CTTSEEEEEESCCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCcEEEEeccccHHHHHHHHh-ccchhhccCCCCHHHHHHHHHHH
Confidence 35556554 44432222334443 45678888886655555555544
No 62
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=68.92 E-value=35 Score=27.34 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|++.||++.. .+ ...+|+|++........ ..++.+.+++. ..
T Consensus 11 ~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~-g~~~~~~l~~~----------------~~ 73 (122)
T 3gl9_A 11 SAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMD-GFTVLKKLQEK----------------EE 73 (122)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSC-HHHHHHHHHTS----------------TT
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCc-HHHHHHHHHhc----------------cc
Confidence 345567788889999997632 11 14689999965443322 23344333321 11
Q ss_pred CCCCEE-EEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 159 KHPPKI-VVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 159 ~p~~~I-vvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
.+..+| ++.|..........++ ....|++..+-....+...+..
T Consensus 74 ~~~~pii~~s~~~~~~~~~~~~~-~Ga~~~l~KP~~~~~L~~~i~~ 118 (122)
T 3gl9_A 74 WKRIPVIVLTAKGGEEDESLALS-LGARKVMRKPFSPSQFIEEVKH 118 (122)
T ss_dssp TTTSCEEEEESCCSHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHH
T ss_pred ccCCCEEEEecCCchHHHHHHHh-cChhhhccCCCCHHHHHHHHHH
Confidence 244444 4555433323334443 4566888887555444444443
No 63
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=68.34 E-value=34 Score=28.65 Aligned_cols=105 Identities=9% Similarity=0.067 Sum_probs=59.7
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhh
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKRE 146 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~ 146 (524)
.+|.++. =|....+.+...|.+.||++.. .+. ..+|+|++....... ...++.+.+++
T Consensus 15 ~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~-~g~~~~~~l~~------- 82 (153)
T 3hv2_A 15 PEILLVD----SQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQM-DGPTLLARIHQ------- 82 (153)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSS-CHHHHHHHHHH-------
T ss_pred ceEEEEC----CCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcC-cHHHHHHHHHh-------
Confidence 4555543 2456677888899999997532 221 468999997654432 23334444432
Q ss_pred hhhcccccccccCCCCEEEEEcccccc-cHHHHHhhCC-cceEEECCCCcccHHHHHHHHh
Q 041524 147 WKKNVATGRSQSKHPPKIVVLGCMAER-LKDKILDADK-MVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 147 ~~~~~~~~~~~~~p~~~IvvgG~~at~-~~e~~l~~~~-~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
..+..+||+....... ...+.++ .. ..|++..+-....|...++.+.
T Consensus 83 -----------~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 83 -----------QYPSTTRILLTGDPDLKLIAKAIN-EGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp -----------HCTTSEEEEECCCCCHHHHHHHHH-TTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred -----------HCCCCeEEEEECCCCHHHHHHHHh-CCCcceEEeCCCCHHHHHHHHHHHH
Confidence 1366666655444432 2233443 34 4678888766666666655543
No 64
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=67.92 E-value=78 Score=29.44 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=54.5
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
|..++++.++-++.+.+.|++-|.+...+ ....+.++++.+..+
T Consensus 24 r~~~~~~~~~~~~al~~gGv~~iel~~k~------------------------------------~~~~~~i~~l~~~~~ 67 (224)
T 1vhc_A 24 ALDNADDILPLADTLAKNGLSVAEITFRS------------------------------------EAAADAIRLLRANRP 67 (224)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETTS------------------------------------TTHHHHHHHHHHHCT
T ss_pred eCCCHHHHHHHHHHHHHcCCCEEEEeccC------------------------------------chHHHHHHHHHHhCc
Confidence 45677888888999999999988775211 113456666666666
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~ 385 (524)
...+...+ .++.+.++...++ |...++.| + .+.++.+
T Consensus 68 ~l~vgaGt----vl~~d~~~~A~~a--GAd~v~~p-~-~d~~v~~ 104 (224)
T 1vhc_A 68 DFLIAAGT----VLTAEQVVLAKSS--GADFVVTP-G-LNPKIVK 104 (224)
T ss_dssp TCEEEEES----CCSHHHHHHHHHH--TCSEEECS-S-CCHHHHH
T ss_pred CcEEeeCc----EeeHHHHHHHHHC--CCCEEEEC-C-CCHHHHH
Confidence 66665553 2356777777777 99999999 3 4555443
No 65
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=67.85 E-value=90 Score=30.08 Aligned_cols=143 Identities=13% Similarity=0.161 Sum_probs=81.4
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..++|..+-||++. -..+++.+++-++.+.+.|+..|.+.| ..+ + .
T Consensus 136 V~~~l~~~~~~e~~-------------~~~~~~~~~~~~~~~~~~G~d~i~l~D-t~G-~------------~------- 181 (295)
T 1ydn_A 136 IRGYVSCVVECPYD-------------GPVTPQAVASVTEQLFSLGCHEVSLGD-TIG-R------------G------- 181 (295)
T ss_dssp EEEEEECSSEETTT-------------EECCHHHHHHHHHHHHHHTCSEEEEEE-TTS-C------------C-------
T ss_pred EEEEEEEEecCCcC-------------CCCCHHHHHHHHHHHHhcCCCEEEecC-CCC-C------------c-------
Confidence 34566666777752 134788899888888888999999885 222 1 1
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC-C-
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR-G- 390 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R-~- 390 (524)
.+....++++.+.+..+...+.+..-+-..+ ....+..+. + |+.+++..+--...--+.- +| |
T Consensus 182 ----------~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~-a--G~~~vd~sv~GlG~cp~a~-g~~GN 247 (295)
T 1ydn_A 182 ----------TPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLE-K--GLRVFDASVGGLGGCPFAP-GAKGN 247 (295)
T ss_dssp ----------CHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHH-H--TCCEEEEBTTCCSCBTTBT-TSCCB
T ss_pred ----------CHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHH-h--CCCEEEeccccCCCCCCCC-CCcCC
Confidence 1356788888888776543344432111122 244555554 4 9999988763311000000 12 2
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
...|++...++ +. |+. +|-+.+.+.++.+++.++
T Consensus 248 ~~~e~lv~~l~---~~--g~~---------~~id~~~l~~~~~~~~~~ 281 (295)
T 1ydn_A 248 VDTVAVVEMLH---EM--GFE---------TGLDLDRLRSAGLFTQAL 281 (295)
T ss_dssp CBHHHHHHHHH---HT--TCB---------CCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH---hc--CCC---------CCcCHHHHHHHHHHHHHH
Confidence 23555555443 34 432 234667777777777664
No 66
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=67.74 E-value=28 Score=29.42 Aligned_cols=103 Identities=9% Similarity=0.094 Sum_probs=57.0
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeec--cCCC---------C--CCcEEEEeeccCcchHHHHHHHHHHHHHHh
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEV--INVP---------E--NAEVIFINTCAIRDYAEHKVWQRLNYFWFL 143 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~--~~~~---------~--~aDvv~intc~v~~~a~~~~~~~l~~~~~~ 143 (524)
.+|.++. -|....+.+...|++.||+++ +.+. . .+|+|++....... ...++.+.|++.
T Consensus 37 ~~Ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~-~g~~~~~~lr~~--- 108 (157)
T 3hzh_A 37 FNVLIVD----DSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKM-DGITCLSNIMEF--- 108 (157)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSS-CHHHHHHHHHHH---
T ss_pred eEEEEEe----CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCc-cHHHHHHHHHhh---
Confidence 3565543 366778889999999999853 2221 2 67999997554332 233344444432
Q ss_pred hhhhhhcccccccccCCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 144 KREWKKNVATGRSQSKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 144 ~~~~~~~~~~~~~~~~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
.+..+|++ .+........+.++ ....|++..+-....|.+.+..
T Consensus 109 ---------------~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~ 153 (157)
T 3hzh_A 109 ---------------DKNARVIMISALGKEQLVKDCLI-KGAKTFIVKPLDRAKVLQRVMS 153 (157)
T ss_dssp ---------------CTTCCEEEEESCCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHH
T ss_pred ---------------CCCCcEEEEeccCcHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHH
Confidence 35555554 44332222334443 3456788877555544444443
No 67
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=67.52 E-value=40 Score=28.06 Aligned_cols=101 Identities=10% Similarity=0.133 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHH-CCCeec--cCC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 89 NVNDMEIVLSIMKN-AGYSEV--INV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 89 N~~d~e~i~~~L~~-~Gy~~~--~~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
|....+.+...|.+ .||+++ +.+ ...+|+|++....... ...++...+++.
T Consensus 14 ~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~-~g~~~~~~l~~~---------------- 76 (153)
T 3cz5_A 14 HPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGP-GGIEATRHIRQW---------------- 76 (153)
T ss_dssp CHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSS-CHHHHHHHHHHH----------------
T ss_pred cHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCC-CHHHHHHHHHHh----------------
Confidence 34556777788877 688753 122 1368999996544322 233344444332
Q ss_pred ccCCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCC
Q 041524 157 QSKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQK 209 (524)
Q Consensus 157 ~~~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~ 209 (524)
.+..+|++ ++..........++ ....|++..+-....|...+..+..+..
T Consensus 77 --~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 77 --DGAARILIFTMHQGSAFALKAFE-AGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp --CTTCCEEEEESCCSHHHHHHHHH-TTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred --CCCCeEEEEECCCCHHHHHHHHH-CCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 34555554 44332222334443 4556888888777788888887766554
No 68
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=67.18 E-value=32 Score=27.45 Aligned_cols=97 Identities=5% Similarity=0.087 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|...||++.. .+. ..+|+|++........ ..++.+.+++.
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~-g~~~~~~l~~~------------------ 72 (124)
T 1srr_A 12 QSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMD-GIEILKRMKVI------------------ 72 (124)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCC-HHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCC-HHHHHHHHHHh------------------
Confidence 345567788888888987521 111 3689999975543322 22344444321
Q ss_pred CCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 159 KHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 159 ~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
.|..+|++ .|........+.++ ....|++..+-....+.+.++.+.
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 73 DENIRVIIMTAYGELDMIQESKE-LGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHH-HTCCCEEESSCCHHHHHHHHHHHS
T ss_pred CCCCCEEEEEccCchHHHHHHHh-cChHhhccCCCCHHHHHHHHHHHh
Confidence 35566554 44332222334444 355788888766555555555443
No 69
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=66.89 E-value=39 Score=33.06 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=82.7
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+.+.+++.++.+.+.|..-|-+-++...- |.+. . ...+--.++..+++.+.+.
T Consensus 47 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-------------ga~~-v--------~~~eE~~Rv~pvI~~l~~~-- 102 (294)
T 2dqw_A 47 RYLDPERALERAREMVAEGADILDLGAESTRP-------------GAAP-V--------PVEEEKRRLLPVLEAVLSL-- 102 (294)
T ss_dssp ------CCHHHHHHHHHHTCSEEEEECC---------------------------------CCHHHHHHHHHHHHHTT--
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-------------CCCC-C--------CHHHHHHHHHHHHHHHHhC--
Confidence 34678999999999999999988776654321 1000 0 0011124566677776643
Q ss_pred ceEEEEecC-------------------CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC------HHH
Q 041524 341 EMRFRYTSP-------------------HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT------REA 395 (524)
Q Consensus 341 ~~~ir~~s~-------------------~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t------~e~ 395 (524)
...+.+.+. ... .+++++++.+++ ||..+-+..+-|.++.....- .|. .+.
T Consensus 103 ~vpiSIDT~~~~Va~aAl~aGa~iINdVsg~-~d~~m~~v~a~~--~~~vVlmh~~eG~p~tm~~~~-~y~dv~~ev~~~ 178 (294)
T 2dqw_A 103 GVPVSVDTRKPEVAEEALKLGAHLLNDVTGL-RDERMVALAARH--GVAAVVMHMPVPDPATMMAHA-RYRDVVAEVKAF 178 (294)
T ss_dssp CSCEEEECSCHHHHHHHHHHTCSEEECSSCS-CCHHHHHHHHHH--TCEEEEECCSSSCTTTGGGGC-CCSSHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHhCCCEEEECCCC-CChHHHHHHHHh--CCCEEEEcCCCCCCccccccC-ccccHHHHHHHH
Confidence 334455442 222 468899999888 888877766424443222111 122 456
Q ss_pred HHHHHHHHHHhCCCcE-EEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 396 YLDLVQKIRQIIPDVG-LSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 396 ~~~~v~~ir~~~pgi~-i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
+.+.++.+.++ |+. |..|=-+|| |.|.++-.++++-+.++
T Consensus 179 l~~~i~~a~~~--Gi~~IilDPG~Gf-~kt~~~n~~ll~~l~~~ 219 (294)
T 2dqw_A 179 LEAQARRALSA--GVPQVVLDPGFGF-GKLLEHNLALLRRLDEI 219 (294)
T ss_dssp HHHHHHHHHHT--TCSCEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHC--CCCcEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 67778888888 774 555655577 77887666666665554
No 70
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=66.85 E-value=46 Score=27.66 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=61.7
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCC--Ceec-cCC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhh
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAG--YSEV-INV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLK 144 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~G--y~~~-~~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~ 144 (524)
.+|.++. =+....+.+...|.+.| |.+. +.+ ...+|+|++....... ...++.+.+++
T Consensus 21 ~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~-~g~~~~~~l~~----- 90 (150)
T 4e7p_A 21 MKVLVAE----DQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVK-TGLEVLEWIRS----- 90 (150)
T ss_dssp EEEEEEC----SCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSS-CHHHHHHHHHH-----
T ss_pred cEEEEEc----CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCC-cHHHHHHHHHH-----
Confidence 3555543 34566778888888887 5431 222 2468999997654332 22334443332
Q ss_pred hhhhhcccccccccCCCCEEEEEccccc-ccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 145 REWKKNVATGRSQSKHPPKIVVLGCMAE-RLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 145 ~~~~~~~~~~~~~~~p~~~IvvgG~~at-~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
..++.+|++...... ....+.++ ....|++..+-....+.+.+..+..+.
T Consensus 91 -------------~~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 91 -------------EKLETKVVVVTTFKRAGYFERAVK-AGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp -------------TTCSCEEEEEESCCCHHHHHHHHH-TTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred -------------hCCCCeEEEEeCCCCHHHHHHHHH-CCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 236666665443333 23334444 455688888877777777777666554
No 71
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=66.65 E-value=32 Score=28.71 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=62.1
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeec---cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhh
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEV---INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLK 144 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~---~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~ 144 (524)
.+|.++- =|....+.+...|.+.|+..+ +.+. ..+|+|++....... ...++.+.+++
T Consensus 16 ~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~-~g~~~~~~l~~----- 85 (152)
T 3eul_A 16 VRVVVGD----DHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGM-DGAQVAAAVRS----- 85 (152)
T ss_dssp EEEEEEC----SSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSS-CHHHHHHHHHH-----
T ss_pred EEEEEEc----CCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHh-----
Confidence 3455533 255667888889999885321 2221 368999997654332 23334443332
Q ss_pred hhhhhcccccccccCCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCC
Q 041524 145 REWKKNVATGRSQSKHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQK 209 (524)
Q Consensus 145 ~~~~~~~~~~~~~~~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~ 209 (524)
..|..+|++....... ...+.++ ....|++..+-....+.+.+..+..|+.
T Consensus 86 -------------~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 86 -------------YELPTRVLLISAHDEPAIVYQALQ-QGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp -------------TTCSCEEEEEESCCCHHHHHHHHH-TTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred -------------cCCCCeEEEEEccCCHHHHHHHHH-cCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 2366666655444432 2234443 4557888888777777777776665543
No 72
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=66.58 E-value=17 Score=29.84 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHCCCeec-cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEV-INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~-~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||.+. +.+. ..+|+|++....... ...++.+.+++ .
T Consensus 16 ~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~-~g~~~~~~l~~------------------~ 76 (137)
T 3hdg_A 16 DTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKL-GGLEMLDRIKA------------------G 76 (137)
T ss_dssp CHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSS-CHHHHHHHHHH------------------T
T ss_pred CHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCC-CHHHHHHHHHh------------------c
Confidence 45667788888888888642 2221 368999997654332 23334444432 2
Q ss_pred CCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 159 KHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 159 ~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
.+..+|++....... ...+.++ ....|++..+-....|.+.++.+..+
T Consensus 77 ~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 77 GAKPYVIVISAFSEMKYFIKAIE-LGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp TCCCEEEECCCCCCHHHHHHHHH-HCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecCcChHHHHHHHh-CCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 366777765544442 2233444 34567887776666677666666543
No 73
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=66.52 E-value=45 Score=26.19 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHCCCeec--cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEV--INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~--~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|...||+++ +.+. ..+|+|++........ ..++.+.+++.
T Consensus 11 ~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~-g~~~~~~l~~~----------------- 72 (120)
T 1tmy_A 11 AAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMN-GIDAIKEIMKI----------------- 72 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGC-HHHHHHHHHHH-----------------
T ss_pred cHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCc-HHHHHHHHHhh-----------------
Confidence 44556778888888999732 2221 2589999975443222 23344444321
Q ss_pred cCCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHH
Q 041524 158 SKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLE 202 (524)
Q Consensus 158 ~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~ 202 (524)
.|..+|+ +.+..........++ ....|++..+-....+.+.++
T Consensus 73 -~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~ 116 (120)
T 1tmy_A 73 -DPNAKIIVCSAMGQQAMVIEAIK-AGAKDFIVKPFQPSRVVEALN 116 (120)
T ss_dssp -CTTCCEEEEECTTCHHHHHHHHH-TTCCEEEESSCCHHHHHHHHH
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHH-hCcceeEeCCCCHHHHHHHHH
Confidence 2444554 444433222334443 455688888765555544444
No 74
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=65.86 E-value=34 Score=27.07 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+. ..+|+|++...........++.+.+++. ..
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~----------------~~ 77 (127)
T 2gkg_A 14 DTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKD----------------DD 77 (127)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHS----------------TT
T ss_pred CHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC----------------cc
Confidence 456677888899999997532 111 2689999965443021223344433321 11
Q ss_pred CCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.+..+|++.+..........++ ....|++..+-....+...++.+
T Consensus 78 ~~~~~ii~~~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~i~~~ 122 (127)
T 2gkg_A 78 LKNVPIVIIGNPDGFAQHRKLK-AHADEYVAKPVDADQLVERAGAL 122 (127)
T ss_dssp TTTSCEEEEECGGGHHHHHHST-TCCSEEEESSCCHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCchhHHHHHH-hCcchheeCCCCHHHHHHHHHHH
Confidence 3555555553322222233333 34457787775555555555443
No 75
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=65.52 E-value=1e+02 Score=29.89 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=62.2
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..++|...-||++. + ..+++.+++-++.+.+.|+..|.+.| ..+ + ..
T Consensus 140 V~~~l~~~~~~e~~----------~---~~~~~~~~~~~~~~~~~G~d~i~l~D-T~G-~------------~~------ 186 (302)
T 2ftp_A 140 VRGYISCVLGCPYD----------G---DVDPRQVAWVARELQQMGCYEVSLGD-TIG-V------------GT------ 186 (302)
T ss_dssp EEEEEECTTCBTTT----------B---CCCHHHHHHHHHHHHHTTCSEEEEEE-SSS-C------------CC------
T ss_pred EEEEEEEEeeCCcC----------C---CCCHHHHHHHHHHHHHcCCCEEEEeC-CCC-C------------cC------
Confidence 34555555666632 2 35788999999999999999999884 332 1 11
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcC
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiE 377 (524)
+....++++.+.+..|...+.+..-+-..+ ....+..+. + |+.+|+..+-
T Consensus 187 -----------P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~-a--Ga~~vd~tv~ 237 (302)
T 2ftp_A 187 -----------AGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLL-E--GIAVFDSSVA 237 (302)
T ss_dssp -----------HHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHH-T--TCCEEEEBGG
T ss_pred -----------HHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHH-h--CCCEEEeccc
Confidence 356788899888776544554442111222 345566664 5 9999998765
No 76
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=65.35 E-value=47 Score=27.68 Aligned_cols=97 Identities=8% Similarity=0.046 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+ ...+|+|++........ ..++.+.+++.
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~-g~~~~~~l~~~------------------ 76 (154)
T 2rjn_A 16 EQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMG-GEVFLEQVAKS------------------ 76 (154)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSC-HHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCC-HHHHHHHHHHh------------------
Confidence 456678888899999997531 11 13689999976543322 23344444321
Q ss_pred CCCCEEEEEccccc-ccHHHHHhhCC-cceEEECCCCcccHHHHHHHHh
Q 041524 159 KHPPKIVVLGCMAE-RLKDKILDADK-MVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 159 ~p~~~IvvgG~~at-~~~e~~l~~~~-~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
.|..+|++...... ......++ .. ..|++..+-....+...+..+.
T Consensus 77 ~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 77 YPDIERVVISGYADAQATIDAVN-RGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp CTTSEEEEEECGGGHHHHHHHHH-TTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEecCCCHHHHHHHHh-ccchheeeeCCCCHHHHHHHHHHHH
Confidence 35666665443333 22233333 23 4578888766666666665543
No 77
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=64.97 E-value=17 Score=29.83 Aligned_cols=96 Identities=7% Similarity=-0.008 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHCC-Ceecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAG-YSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~G-y~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|.+.| |++.. .+ ...+|+|++........ ..++.+.+++.
T Consensus 23 ~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~-g~~~~~~l~~~----------------- 84 (135)
T 3snk_A 23 DPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLL-GKPGIVEARAL----------------- 84 (135)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGG-GSTTHHHHHGG-----------------
T ss_pred CHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCch-HHHHHHHHHhh-----------------
Confidence 5666788999999999 97531 11 14689999976543222 22233333321
Q ss_pred cCCCCEE-EEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 158 SKHPPKI-VVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 158 ~~p~~~I-vvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.+..+| ++.|..........++ ....|++..+-....+...+..+
T Consensus 85 -~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~L~~~i~~~ 130 (135)
T 3snk_A 85 -WATVPLIAVSDELTSEQTRVLVR-MNASDWLHKPLDGKELLNAVTFH 130 (135)
T ss_dssp -GTTCCEEEEESCCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHT
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHH-cCcHhhccCCCCHHHHHHHHHHH
Confidence 234444 4555433333334444 45578888876555555555443
No 78
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=64.73 E-value=25 Score=28.67 Aligned_cols=97 Identities=10% Similarity=0.062 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHCCCeec--cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEV--INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~--~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|.+.||+++ +.+. ..+|+|++...........++.+.+++
T Consensus 18 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~------------------ 79 (140)
T 3cg0_A 18 GRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAA------------------ 79 (140)
T ss_dssp BHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHh------------------
Confidence 45667788889998899863 2221 368999997554312222334443332
Q ss_pred cCCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 158 SKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 158 ~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
. +..+|+ +.+..........++ ....|++..+-....+...+..+.
T Consensus 80 ~-~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 80 G-CNLPIIFITSSQDVETFQRAKR-VNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp H-SCCCEEEEECCCCHHHHHHHHT-TCCSEEEEESCCHHHHHHHHHHHH
T ss_pred C-CCCCEEEEecCCCHHHHHHHHh-cCCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 344444 444433222334443 455688888766666666665543
No 79
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=64.68 E-value=34 Score=33.52 Aligned_cols=148 Identities=15% Similarity=0.195 Sum_probs=84.6
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+++.+++.++.+.+.|..-|-+-++.... |.+. .+ ..+--.++..+++.+.+.
T Consensus 41 ~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrP-------------ga~~-----v~----~~eE~~Rv~pvi~~l~~~-- 96 (294)
T 2y5s_A 41 RFLARDDALRRAERMIAEGADLLDIGGESTRP-------------GAPP-----VP----LDEELARVIPLVEALRPL-- 96 (294)
T ss_dssp ---CTTHHHHHHHHHHHTTCSEEEEESSCCST-------------TCCC-----CC----HHHHHHHHHHHHHHHGGG--
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-------------CCCC-----CC----HHHHHHHHHHHHHHHhhC--
Confidence 34678999999999999999988776654321 1100 00 011124455666666543
Q ss_pred ceEEEEecC-------------------CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC------HHH
Q 041524 341 EMRFRYTSP-------------------HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT------REA 395 (524)
Q Consensus 341 ~~~ir~~s~-------------------~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t------~e~ 395 (524)
...+.+.+. .... +++++++.+++ ||..+-+..+ |.++....-.-.|. .+.
T Consensus 97 ~vpiSIDT~~~~Va~aAl~aGa~iINdVsg~~-d~~m~~~~a~~--~~~vVlmh~~-G~p~tm~~~~~~y~dv~~ev~~~ 172 (294)
T 2y5s_A 97 NVPLSIDTYKPAVMRAALAAGADLINDIWGFR-QPGAIDAVRDG--NSGLCAMHML-GEPQTMQVGEPDYGDVVTDVRDF 172 (294)
T ss_dssp CSCEEEECCCHHHHHHHHHHTCSEEEETTTTC-STTHHHHHSSS--SCEEEEECCC-EETTTTEECCCCCSSHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHcCCCEEEECCCCC-chHHHHHHHHh--CCCEEEECCC-CCCccccccCCccccHHHHHHHH
Confidence 334555442 2222 56788888887 7877776653 22221110000121 456
Q ss_pred HHHHHHHHHHhCCCcE---EEEeEEEcCCCCCH-HHHHHHHHHHHHcC
Q 041524 396 YLDLVQKIRQIIPDVG---LSSDFICGFCGETE-EEHADTLTLMKAVG 439 (524)
Q Consensus 396 ~~~~v~~ir~~~pgi~---i~~~fI~G~PgET~-ed~~~tl~~l~~l~ 439 (524)
+.+.++.+.++ |+. |..|=-+|| +.|. ++-.++++-+.+++
T Consensus 173 l~~~i~~a~~~--Gi~~~~IilDPG~Gf-~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 173 LAARAQALRDA--GVAAERICVDPGFGF-GKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp HHHHHHHHHHT--TCCGGGEEEECCTTS-SSCTTHHHHHHHHTGGGGS
T ss_pred HHHHHHHHHHc--CCChhhEEEeCCCcc-cccchHHHHHHHHHHHHHH
Confidence 67788888888 886 888887888 5666 55455555555544
No 80
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=64.13 E-value=20 Score=29.40 Aligned_cols=99 Identities=9% Similarity=0.024 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+. ..+|+|++....... ...++.+.+++. ..
T Consensus 15 ~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~-~g~~~~~~l~~~----------------~~ 77 (140)
T 3grc_A 15 DPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQ-DGVSLIRALRRD----------------SR 77 (140)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSS-CHHHHHHHHHTS----------------GG
T ss_pred CHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCC-CHHHHHHHHHhC----------------cc
Confidence 456678888999999997521 221 468999996544332 233344444321 12
Q ss_pred CCCCEEEEEcccccccH-H-HHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 159 KHPPKIVVLGCMAERLK-D-KILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~~-e-~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
.+..+|++......... . ..+ .....|++..+-....|...+..+.
T Consensus 78 ~~~~~ii~~s~~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~l 125 (140)
T 3grc_A 78 TRDLAIVVVSANAREGELEFNSQ-PLAVSTWLEKPIDENLLILSLHRAI 125 (140)
T ss_dssp GTTCEEEEECTTHHHHHHHHCCT-TTCCCEEECSSCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEecCCChHHHHHHhh-hcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 36677776554433211 1 122 2344577877766666655555543
No 81
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=64.07 E-value=83 Score=29.27 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=55.3
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
|..++++.++-++.+.+.|++-|.+...+ ..-.+.++++.+..+
T Consensus 33 r~~~~~~~~~~~~al~~gGv~~iel~~k~------------------------------------~~~~~~i~~l~~~~~ 76 (225)
T 1mxs_A 33 TIAREEDILPLADALAAGGIRTLEVTLRS------------------------------------QHGLKAIQVLREQRP 76 (225)
T ss_dssp CCSCGGGHHHHHHHHHHTTCCEEEEESSS------------------------------------THHHHHHHHHHHHCT
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEecCC------------------------------------ccHHHHHHHHHHhCc
Confidence 44577888888999999999988775211 123455666666666
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
..-+...++ ++.+.++...++ |...+|.| + .+.++.+.
T Consensus 77 ~~~igagtv----l~~d~~~~A~~a--GAd~v~~p-~-~d~~v~~~ 114 (225)
T 1mxs_A 77 ELCVGAGTV----LDRSMFAAVEAA--GAQFVVTP-G-ITEDILEA 114 (225)
T ss_dssp TSEEEEECC----CSHHHHHHHHHH--TCSSEECS-S-CCHHHHHH
T ss_pred ccEEeeCeE----eeHHHHHHHHHC--CCCEEEeC-C-CCHHHHHH
Confidence 666655532 466777777777 99999998 3 46655443
No 82
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=63.94 E-value=28 Score=34.58 Aligned_cols=145 Identities=10% Similarity=0.070 Sum_probs=80.3
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+.+.+++.++.+.+.|..-|-+-++...- | .. . ...+--.++..+++.+.+..+
T Consensus 60 ~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrP-------------G-~~-v--------~~~eEl~Rv~pvI~~l~~~~~ 116 (318)
T 2vp8_A 60 ATFSDAAARDAVHRAVADGADVIDVGGVKAGP-------------G-ER-V--------DVDTEITRLVPFIEWLRGAYP 116 (318)
T ss_dssp ----CHHHHHHHHHHHHTTCSEEEEC---------------------------------CHHHHHHHHHHHHHHHHHHST
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-------------C-CC-C--------CHHHHHHHHHHHHHHHHhhCC
Confidence 34578999999999999999887776543210 1 00 0 001112345566777766544
Q ss_pred ceEEEEecCCC-------------------CCCCHHHHHHHHcCCCCcceeecCcCCcC-HHHHhhhCCCCC--------
Q 041524 341 EMRFRYTSPHP-------------------KDFPDELLYIMRDRPNVCKYIHLPAQTGN-SAVLERMRRGYT-------- 392 (524)
Q Consensus 341 ~~~ir~~s~~p-------------------~~~~~elL~~l~~~~~G~~~i~igiESgs-~~vL~~m~R~~t-------- 392 (524)
...+.+.+.++ . -+++++++.+++ ||..+-+..+ |. ++ .|.+...
T Consensus 117 ~vpISIDT~~~~VaeaAl~aGa~iINDVsg~-~d~~m~~vaa~~--g~~vVlmh~~-G~~p~---tmq~~~~y~~~~~dv 189 (318)
T 2vp8_A 117 DQLISVDTWRAQVAKAACAAGADLINDTWGG-VDPAMPEVAAEF--GAGLVCAHTG-GALPR---TRPFRVSYGTTTRGV 189 (318)
T ss_dssp TCEEEEECSCHHHHHHHHHHTCCEEEETTSS-SSTTHHHHHHHH--TCEEEEECC-----------------CCSCHHHH
T ss_pred CCeEEEeCCCHHHHHHHHHhCCCEEEECCCC-CchHHHHHHHHh--CCCEEEECCC-CCCcc---ccccccccccccccH
Confidence 55666665322 1 157888888888 8887776653 22 22 2222211
Q ss_pred ----HHHHHHHHHHHHHhCCCcE---EEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 393 ----REAYLDLVQKIRQIIPDVG---LSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 393 ----~e~~~~~v~~ir~~~pgi~---i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
.+.+.+.++.+.++ |+. |..|=-+|| +.|.++-.++++-+.++
T Consensus 190 ~~ev~~~l~~~i~~a~~a--GI~~~~IilDPG~GF-~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 190 VDAVISQVTAAAERAVAA--GVAREKVLIDPAHDF-GKNTFHGLLLLRHVADL 239 (318)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCCGGGEEEETTTTC-CTTSHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--CCChhhEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 25566778888888 884 888888888 55655545555544443
No 83
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=63.82 E-value=57 Score=26.40 Aligned_cols=101 Identities=8% Similarity=0.106 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHH-CCCe-ec-cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 89 NVNDMEIVLSIMKN-AGYS-EV-INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 89 N~~d~e~i~~~L~~-~Gy~-~~-~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
|....+.+...|.+ .||+ +. +.+. ..+|+|++........ ..++.+.+++.
T Consensus 17 ~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~-g~~~~~~l~~~---------------- 79 (143)
T 3cnb_A 17 DKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMD-GFSICHRIKST---------------- 79 (143)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSC-HHHHHHHHHTS----------------
T ss_pred CHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCc-HHHHHHHHHhC----------------
Confidence 55667788889998 8998 42 1221 3689999976543322 22333333320
Q ss_pred ccCCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 157 QSKHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
...+..+|++....... .....++ ....|++..+-....|.+.++.+..+
T Consensus 80 ~~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 80 PATANIIVIAMTGALTDDNVSRIVA-LGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTTTSEEEEEESSCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred ccccCCcEEEEeCCCCHHHHHHHHh-cCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 12356666654433332 2233443 45568888876666666666655443
No 84
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=63.60 E-value=54 Score=26.02 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+....+.+...|.+.||++.. .+ ...+|+|++....... .. ++.++++ + +.
T Consensus 11 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~-~g---~~~~~~l---r------------~~ 71 (120)
T 3f6p_A 11 EKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNK-DG---VEVCREV---R------------KK 71 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTT-HH---HHHHHHH---H------------TT
T ss_pred CHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCC-CH---HHHHHHH---H------------hc
Confidence 345567788889999997532 11 1468999996554332 22 3333333 1 11
Q ss_pred CCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
.+-..|++.|..........++ ....||+..+-....+...+..
T Consensus 72 ~~~~ii~~t~~~~~~~~~~~~~-~ga~~~l~KP~~~~~l~~~i~~ 115 (120)
T 3f6p_A 72 YDMPIIMLTAKDSEIDKVIGLE-IGADDYVTKPFSTRELLARVKA 115 (120)
T ss_dssp CCSCEEEEEESSCHHHHHHHHH-TTCCEEEEESCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHh-CCcceeEcCCCCHHHHHHHHHH
Confidence 1223455555433333333443 4567888888655544444443
No 85
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=63.58 E-value=44 Score=26.40 Aligned_cols=99 Identities=11% Similarity=0.126 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+....+.+...|...||++.. .+. ..+|+|++........+ .++.+.+++. ..
T Consensus 10 ~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g-~~~~~~l~~~----------------~~ 72 (124)
T 1mb3_A 10 NELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISG-LEVTKWLKED----------------DD 72 (124)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBH-HHHHHHHHHS----------------TT
T ss_pred CHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCH-HHHHHHHHcC----------------cc
Confidence 445567788888888997521 111 36899999765433322 2344444321 11
Q ss_pred CCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 159 KHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 159 ~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
.+..+|+ +.+..........++. ...|++..+-....+.+.+..+.
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~-g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1mb3_A 73 LAHIPVVAVTAFAMKGDEERIREG-GCEAYISKPISVVHFLETIKRLL 119 (124)
T ss_dssp TTTSCEEEEC------CHHHHHHH-TCSEEECSSCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCHHHHHHHHhC-CCCEEEeCCCCHHHHHHHHHHHH
Confidence 2445554 4444333333444443 45688887755555555555443
No 86
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=63.31 E-value=4 Score=39.73 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=48.1
Q ss_pred CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCC
Q 041524 113 ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192 (524)
Q Consensus 113 ~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ge 192 (524)
.+||+|+|+..|+.+..-..+.+.. ++...|++.|+-+...|+ +++ + +||++.+--
T Consensus 185 p~~D~viiTgstlvN~Tl~~lL~~~---------------------~~a~~vvl~GPStp~~P~-lf~-~-Gv~~laG~~ 240 (270)
T 3l5o_A 185 PECDYVYITCASVVDKTLPRLLELS---------------------RNARRITLVGPGTPLAPV-LFE-H-GLQELSGFM 240 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHHHHHHT---------------------TTSSEEEEESTTCCCCGG-GGG-T-TCSEEEEEE
T ss_pred ccCCEEEEEeehhhcCCHHHHHhhC---------------------CCCCEEEEECCCchhhHH-HHh-c-CcCEEEEEE
Confidence 4899999998888876555443322 134578899999999996 554 3 699876542
Q ss_pred CcccHHHHHHHHhcCC
Q 041524 193 AYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 193 ge~~l~~Ll~~~~~g~ 208 (524)
-.+-..+++.+..|.
T Consensus 241 -V~d~~~~~~~i~~Gg 255 (270)
T 3l5o_A 241 -VKDNARAFRIVAGAE 255 (270)
T ss_dssp -ESCHHHHHHHHTTSS
T ss_pred -EcCHHHHHHHHhcCC
Confidence 334566666665554
No 87
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=62.99 E-value=41 Score=27.52 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+....+.+...|.+.||++.. .+. ..+|+|++........ ..++.+.+++. ..
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~-g~~~~~~lr~~----------------~~ 75 (136)
T 3t6k_A 13 DDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGID-GYTLCKRVRQH----------------PL 75 (136)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSC-HHHHHHHHHHS----------------GG
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCC-HHHHHHHHHcC----------------CC
Confidence 345567888889999997531 121 4689999976543332 33344444321 11
Q ss_pred CCCCE-EEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhc
Q 041524 159 KHPPK-IVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 159 ~p~~~-IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
.+..+ |++.|..-.....+.++ ....||+..+-....+...++.+..
T Consensus 76 ~~~~pii~~t~~~~~~~~~~~~~-~ga~~~l~KP~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 76 TKTLPILMLTAQGDISAKIAGFE-AGANDYLAKPFEPQELVYRVKNILA 123 (136)
T ss_dssp GTTCCEEEEECTTCHHHHHHHHH-HTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred cCCccEEEEecCCCHHHHHHHHh-cCcceEEeCCCCHHHHHHHHHHHHh
Confidence 23444 44555432222334444 3557899988666666666655443
No 88
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=62.53 E-value=59 Score=26.15 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|...||++.. .+. ..+|+|++........ ..++...+++.
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~-g~~~~~~l~~~------------------ 72 (136)
T 1mvo_A 12 EESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD-GIEVCKQLRQQ------------------ 72 (136)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSC-HHHHHHHHHHT------------------
T ss_pred CHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCC-HHHHHHHHHcC------------------
Confidence 345567788888889997521 111 2689999975543322 23344443321
Q ss_pred CCCCE-EEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhc
Q 041524 159 KHPPK-IVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 159 ~p~~~-IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
.+..+ |++.+..........++ ....|++..+-....+...+..+..
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 73 KLMFPILMLTAKDEEFDKVLGLE-LGADDYMTKPFSPREVNARVKAILR 120 (136)
T ss_dssp TCCCCEEEEECTTCCCCHHHHHH-TTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHHHH
Confidence 24444 44555444433444444 4567888888666556555555443
No 89
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=60.96 E-value=62 Score=25.82 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CC-CCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PE-NAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~-~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|...||++.. .+ .. .+|+|++...........++.+.+++.
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~----------------- 76 (132)
T 2rdm_A 14 EAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREI----------------- 76 (132)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHH-----------------
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhc-----------------
Confidence 455667888889999997532 11 12 689999975543212233344444332
Q ss_pred cCCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 158 SKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 158 ~~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
.+..+|++ .+..........+ ..-|++..+-....+...++.+..+.
T Consensus 77 -~~~~~ii~~s~~~~~~~~~~~~---~~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 77 -DPNMPIVYISGHAALEWASNGV---PDSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp -CTTCCEEEEESSCCTTHHHHSC---TTCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred -CCCCCEEEEeCCccHHHHHhhc---CCcceEeCCCCHHHHHHHHHHHHhcC
Confidence 24555554 4433222222222 22378888866666666666655443
No 90
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=60.61 E-value=16 Score=34.63 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=69.5
Q ss_pred EecCCCCC-CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHh-CC--------C-c--EE
Q 041524 346 YTSPHPKD-FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQI-IP--------D-V--GL 412 (524)
Q Consensus 346 ~~s~~p~~-~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~-~p--------g-i--~i 412 (524)
++...|+. .+.+.++.|.++ |...|.+|+ | .|.+.+++.+.++.+|+. .| + + .+
T Consensus 12 it~gDP~~~~t~~~~~~l~~~--GaD~IelG~-S----------~g~t~~~~~~~v~~ir~~~~Pivl~~y~~n~i~~gv 78 (234)
T 2f6u_A 12 ITKLDPDRTNTDEIIKAVADS--GTDAVMISG-T----------QNVTYEKARTLIEKVSQYGLPIVVEPSDPSNVVYDV 78 (234)
T ss_dssp EEEECTTSCCCHHHHHHHHTT--TCSEEEECC-C----------TTCCHHHHHHHHHHHTTSCCCEEECCSSCCCCCCCS
T ss_pred EEeeCCCccccHHHHHHHHHc--CCCEEEECC-C----------CCCCHHHHHHHHHHhcCCCCCEEEecCCcchhhcCC
Confidence 34445643 788999999998 999999999 2 778999999999999973 13 1 1 23
Q ss_pred EEeEEEcCCCCCHHHHH-----HHHHHH----HHcC-----CCeEEEEeeecCCCChhcc
Q 041524 413 SSDFICGFCGETEEEHA-----DTLTLM----KAVG-----YDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 413 ~~~fI~G~PgET~ed~~-----~tl~~l----~~l~-----~d~~~i~~~sp~pGT~~~~ 458 (524)
.+-+|.-+|.|..+++. +.+..+ ++.+ .+.+..--...-|+|...+
T Consensus 79 Dg~iipdLp~ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~r 138 (234)
T 2f6u_A 79 DYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVAR 138 (234)
T ss_dssp SEEEEEEETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHH
T ss_pred CEEEEcccCCCCCHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEE
Confidence 46677788888888877 555333 5566 6766543334556775554
No 91
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=60.30 E-value=56 Score=26.76 Aligned_cols=98 Identities=9% Similarity=0.114 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHCCCe--ec-cCC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYS--EV-INV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~--~~-~~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
|....+.+...|.+.||. +. +.+ ...+|+|++..... .....++.+.+++.
T Consensus 14 ~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~lr~~---------------- 76 (144)
T 3kht_A 14 NPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLP-IANGFEVMSAVRKP---------------- 76 (144)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCG-GGCHHHHHHHHHSS----------------
T ss_pred CHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCC-CCCHHHHHHHHHhc----------------
Confidence 456678888999999986 31 111 24689999965432 22223333333320
Q ss_pred ccCCCCEEE-EEcccccccHHHHHhhCCcceEEECCC-CcccHHHHHHHH
Q 041524 157 QSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPD-AYRDLPRLLEEV 204 (524)
Q Consensus 157 ~~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~ge-ge~~l~~Ll~~~ 204 (524)
...++.+|+ +.+..........++ ....|++..+- ....+.+.++.+
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~~l~~~i~~~ 125 (144)
T 3kht_A 77 GANQHTPIVILTDNVSDDRAKQCMA-AGASSVVDKSSNNVTDFYGRIYAI 125 (144)
T ss_dssp STTTTCCEEEEETTCCHHHHHHHHH-TTCSEEEECCTTSHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHH-cCCCEEEECCCCcHHHHHHHHHHH
Confidence 123555555 444433333334444 45568888886 666665555544
No 92
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=59.91 E-value=68 Score=31.38 Aligned_cols=143 Identities=14% Similarity=0.204 Sum_probs=80.1
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE 341 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 341 (524)
..+++.+++.++.+.+.|..-|-+.++..-. |... + ...+-..++..+++.+.+.. .
T Consensus 59 ~~~~~~a~~~a~~~v~~GAdiIDIGgeStrP-------------ga~~--------v-~~~eE~~RvvpvI~~l~~~~-~ 115 (297)
T 1tx2_A 59 YNEVDAAVRHAKEMRDEGAHIIDIGGESTRP-------------GFAK--------V-SVEEEIKRVVPMIQAVSKEV-K 115 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEESCC-----------------CCC--------C-CHHHHHHHHHHHHHHHHHHS-C
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCCcCCC-------------CCCC--------C-CHHHHHHHHHHHHHHHHhcC-C
Confidence 4578999999999999999988877654211 1100 0 00111234555556666532 2
Q ss_pred eEEEEecC-------------------CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHH---HHhhhCCCCCHHHHHHH
Q 041524 342 MRFRYTSP-------------------HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSA---VLERMRRGYTREAYLDL 399 (524)
Q Consensus 342 ~~ir~~s~-------------------~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~---vL~~m~R~~t~e~~~~~ 399 (524)
..+.+.+. .....+++++++++++ |+..+-+..+ |.++ +... -.+.+.+.
T Consensus 116 vpiSIDT~~~~V~~aAl~aGa~iINdvsg~~~d~~m~~~aa~~--g~~vVlmh~~-G~p~y~d~v~e-----v~~~l~~~ 187 (297)
T 1tx2_A 116 LPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHY--DVPIILMHNR-DNMNYRNLMAD-----MIADLYDS 187 (297)
T ss_dssp SCEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHH--TCCEEEECCC-SCCCCSSHHHH-----HHHHHHHH
T ss_pred ceEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHh--CCcEEEEeCC-CCCCcchHHHH-----HHHHHHHH
Confidence 33444432 1222345666666666 6655555442 1111 0000 03556778
Q ss_pred HHHHHHhCCCcE---EEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 400 VQKIRQIIPDVG---LSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 400 v~~ir~~~pgi~---i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
++.+.++ |+. |..|=-+|| |-|.++-.++++-+..+
T Consensus 188 i~~a~~~--GI~~~~IilDPg~Gf-gk~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 188 IKIAKDA--GVRDENIILDPGIGF-AKTPEQNLEAMRNLEQL 226 (297)
T ss_dssp HHHHHHT--TCCGGGEEEECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred HHHHHHc--CCChhcEEEeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 8888888 886 888988888 88887655555554443
No 93
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=59.82 E-value=38 Score=27.09 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+. ..+|+|++........ ..++.+.+++. ..
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~-g~~~~~~l~~~----------------~~ 74 (127)
T 3i42_A 12 YQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTS-GLALVKQLRAL----------------PM 74 (127)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSB-HHHHHHHHHHS----------------CC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCC-HHHHHHHHHhh----------------hc
Confidence 456678888999999997521 221 4689999976544332 33344444321 11
Q ss_pred CCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 159 KHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 159 ~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
.+..+|++ .+...... ...+.. ...|++..+-....|.+.+..
T Consensus 75 ~~~~~ii~~s~~~~~~~-~~~~~~-g~~~~l~KP~~~~~L~~~i~~ 118 (127)
T 3i42_A 75 EKTSKFVAVSGFAKNDL-GKEACE-LFDFYLEKPIDIASLEPILQS 118 (127)
T ss_dssp SSCCEEEEEECC-CTTC-CHHHHH-HCSEEEESSCCHHHHHHHHHH
T ss_pred cCCCCEEEEECCcchhH-HHHHHH-hhHHheeCCCCHHHHHHHHHH
Confidence 35566554 44433333 333332 345788887554444444443
No 94
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=59.66 E-value=29 Score=28.52 Aligned_cols=95 Identities=11% Similarity=0.091 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCC
Q 041524 91 NDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKH 160 (524)
Q Consensus 91 ~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 160 (524)
...+.+...|...||++.. .+. ..+|+|++........ ..++.+.+++ ..+
T Consensus 15 ~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~-g~~l~~~l~~------------------~~~ 75 (137)
T 3cfy_A 15 SLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMS-GEDVLDWINQ------------------NDI 75 (137)
T ss_dssp THHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSB-HHHHHHHHHH------------------TTC
T ss_pred HHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCC-HHHHHHHHHh------------------cCC
Confidence 3456667777777776421 111 3689999975543322 2234444432 135
Q ss_pred CCEEEEEccccc-ccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 161 PPKIVVLGCMAE-RLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 161 ~~~IvvgG~~at-~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
..+|++.....+ ......++ ....|++..+-....+...++.+.
T Consensus 76 ~~~ii~ls~~~~~~~~~~~~~-~ga~~~l~KP~~~~~L~~~i~~~~ 120 (137)
T 3cfy_A 76 PTSVIIATAHGSVDLAVNLIQ-KGAEDFLEKPINADRLKTSVALHL 120 (137)
T ss_dssp CCEEEEEESSCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHH-CCccEEEeCCCCHHHHHHHHHHHH
Confidence 566655433332 22233443 455688888866666666665543
No 95
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=59.31 E-value=1.2e+02 Score=29.26 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=52.8
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.|.|- ++.. .+..+.++++.+.+..+..
T Consensus 153 ~~~~~~~~~~~~~~~~Ga~~i~l~DT-~G~~------------------------------~P~~~~~lv~~l~~~~~~~ 201 (298)
T 2cw6_A 153 ISPAKVAEVTKKFYSMGCYEISLGDT-IGVG------------------------------TPGIMKDMLSAVMQEVPLA 201 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEET-TSCC------------------------------CHHHHHHHHHHHHHHSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC-CCCc------------------------------CHHHHHHHHHHHHHhCCCC
Confidence 47889999999999999999998863 2211 1356888888888876655
Q ss_pred EEEEecCCCC-CC-CHHHHHHHHcCCCCcceeecCcC
Q 041524 343 RFRYTSPHPK-DF-PDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 343 ~ir~~s~~p~-~~-~~elL~~l~~~~~G~~~i~igiE 377 (524)
.+.+. .|.+ .+ ....+..+. + |+.+++..+-
T Consensus 202 ~i~~H-~Hn~~Gla~An~laA~~-a--Ga~~vd~tv~ 234 (298)
T 2cw6_A 202 ALAVH-CHDTYGQALANTLMALQ-M--GVSVVDSSVA 234 (298)
T ss_dssp GEEEE-EBCTTSCHHHHHHHHHH-T--TCCEEEEBTT
T ss_pred eEEEE-ECCCCchHHHHHHHHHH-h--CCCEEEeecc
Confidence 55554 2321 11 233455554 4 9999886544
No 96
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=58.80 E-value=4.5 Score=38.84 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=49.2
Q ss_pred CCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCC
Q 041524 114 NAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDA 193 (524)
Q Consensus 114 ~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~geg 193 (524)
+||+|+++..|+.++.-..+.+.. .+...+|+.|+-+...|+-+.. -+||++.+- -
T Consensus 164 ~~D~v~iTGsTlvN~Ti~~lL~~~---------------------~~~~~vvl~GPS~~~~P~~~~~--~Gv~~l~g~-~ 219 (249)
T 3npg_A 164 EVDGIIASASCIVNGTLDMILDRA---------------------KKAKLIVITGPTGQLLPEFLKG--TKVTHLASM-K 219 (249)
T ss_dssp GCSEEEEETTHHHHTCHHHHHHHC---------------------SSCSEEEEESGGGCSCGGGGTT--SSCCEEEEE-E
T ss_pred cCCEEEEEeeeeccCCHHHHHHhC---------------------cccCeEEEEecCchhhHHHHhh--CCccEEEEE-E
Confidence 699999998888887655444321 1344789999999999987654 368887653 3
Q ss_pred cccHHHHHHHHhcCC
Q 041524 194 YRDLPRLLEEVDYGQ 208 (524)
Q Consensus 194 e~~l~~Ll~~~~~g~ 208 (524)
-.+-..+++.+..|.
T Consensus 220 v~d~~~~l~~i~~G~ 234 (249)
T 3npg_A 220 VTNIEKALVKLKLGS 234 (249)
T ss_dssp ESCHHHHHHHHHHTC
T ss_pred ecCHHHHHHHHHccc
Confidence 345566777776663
No 97
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=58.54 E-value=20 Score=39.03 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=57.0
Q ss_pred CccEEEEecCCC-CCHHHHHHHHHHHHHCCCeeccCC-------------CCCCcEEEEeeccCcchHHHHHHHHHHHHH
Q 041524 76 QGRIYQETYGCQ-MNVNDMEIVLSIMKNAGYSEVINV-------------PENAEVIFINTCAIRDYAEHKVWQRLNYFW 141 (524)
Q Consensus 76 ~~~~~~~t~GC~-~N~~d~e~i~~~L~~~Gy~~~~~~-------------~~~aDvv~intc~v~~~a~~~~~~~l~~~~ 141 (524)
..++.+.++|-- .--.=...+...|+..||++ ++. ..+||||+|++.. ......+-..++.|
T Consensus 509 ~~kvvLatLg~Da~Hd~ga~~va~~l~~aGfeV-i~~g~~~tee~v~aa~e~~adiv~lSsl~--~~~~~~~~~v~~~L- 584 (637)
T 1req_B 509 RPKVFLACLGTRRDFGGREGFSSPVWHIAGIDT-PQVEGGTTAEIVEAFKKSGAQVADLCSSA--KVYAQQGLEVAKAL- 584 (637)
T ss_dssp CCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBC-CEEECCCHHHHHHHHHHHTCSEEEEECCH--HHHHHHHHHHHHHH-
T ss_pred hhhhhHhhhCCchhhhhhHHHHHHHHHhCCeeE-EeCCCCCCHHHHHHHHhcCCCEEEEeccc--HHHHHHHHHHHHHH-
Confidence 457999999921 11111348888999999986 332 1589999995433 22222223333322
Q ss_pred HhhhhhhhcccccccccCCCCEEEEEcccccc--cHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 142 FLKREWKKNVATGRSQSKHPPKIVVLGCMAER--LKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~--~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
|. + .. .+|+|||.-.+. ..+++ .. ++|.++.... +..+++..+
T Consensus 585 --k~-----------a-G~-~~V~vgG~P~~d~~~~~~~-~~--G~D~~~~~g~--~~~~~l~~l 629 (637)
T 1req_B 585 --KA-----------A-GA-KALYLSGAFKEFGDDAAEA-EK--LIDGRLFMGM--DVVDTLSST 629 (637)
T ss_dssp --HH-----------T-TC-SEEEEESCGGGGGGGHHHH-HH--HCCCEECTTC--CHHHHHHHH
T ss_pred --Hh-----------C-CC-CeEEEeCCCCccchhhHHH-Hh--ccceEecCCc--CHHHHHHHH
Confidence 11 1 12 568888853321 12344 33 7888776533 334444433
No 98
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=57.59 E-value=54 Score=26.35 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHCCCe-ec-cCC----------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYS-EV-INV----------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~-~~-~~~----------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
|....+.+...|.+.||+ +. +.+ ...+|+|++....... ...++.+.+++.
T Consensus 14 ~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~-~g~~~~~~lr~~---------------- 76 (129)
T 3h1g_A 14 SSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEM-NGLDLVKKVRSD---------------- 76 (129)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSS-CHHHHHHHHHTS----------------
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCC-CHHHHHHHHHhc----------------
Confidence 456678888899999995 21 111 1258999986544332 223344443321
Q ss_pred ccCCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 157 QSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 157 ~~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
...+..+|+ +.+..........++ ....||+..+-....+.+.++.+.
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 77 SRFKEIPIIMITAEGGKAEVITALK-AGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp TTCTTCCEEEEESCCSHHHHHHHHH-HTCCEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCChHHHHHHHH-cCccEEEeCCCCHHHHHHHHHHHh
Confidence 122444454 444332222334444 345689998876666666665544
No 99
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=57.55 E-value=63 Score=26.64 Aligned_cols=101 Identities=9% Similarity=0.096 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+ ...+|+|++....... ...++.+.+++. .. ..
T Consensus 23 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~-~g~~~~~~lr~~---~~-----------~~ 87 (143)
T 3m6m_D 23 HEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGM-NGLDMLKQLRVM---QA-----------SG 87 (143)
T ss_dssp SHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSS-CHHHHHHHHHHH---HH-----------TT
T ss_pred CHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCC-CHHHHHHHHHhc---hh-----------cc
Confidence 455677788888888887532 11 1468999996554332 233444544432 10 11
Q ss_pred CCCC-EEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 159 KHPP-KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 159 ~p~~-~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
.+.. .|++.+..........++ ....||+..+-....+.+.+..+.
T Consensus 88 ~~~~pii~~s~~~~~~~~~~~~~-~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 88 MRYTPVVVLSADVTPEAIRACEQ-AGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp CCCCCEEEEESCCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHHC
T ss_pred CCCCeEEEEeCCCCHHHHHHHHH-cChhheeeCCCCHHHHHHHHHHHH
Confidence 2333 444555433222334443 455789998877666666666554
No 100
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=56.85 E-value=78 Score=25.69 Aligned_cols=99 Identities=8% Similarity=0.140 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|...||++.. .+. ..+|+|++........ ..++...+++. ..
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~-g~~~~~~l~~~----------------~~ 74 (138)
T 3c3m_A 12 SPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMD-GWETLERIKTD----------------PA 74 (138)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSC-HHHHHHHHHHS----------------TT
T ss_pred CHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCC-HHHHHHHHHcC----------------cc
Confidence 445567788888888997531 111 3689999976543322 23344443321 11
Q ss_pred CCCCEEE-EEcccccccHHHHHhhCC-cceEEECCCCcccHHHHHHHHhc
Q 041524 159 KHPPKIV-VLGCMAERLKDKILDADK-MVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 159 ~p~~~Iv-vgG~~at~~~e~~l~~~~-~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
.+..+|+ +.+. ... ......... ..|++..+-....+...+..+..
T Consensus 75 ~~~~~ii~ls~~-~~~-~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 75 TRDIPVLMLTAK-PLT-PEEANEYGSYIEDYILKPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp TTTSCEEEEESS-CCC-HHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEECC-CCh-HHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHH
Confidence 2344444 4554 332 233332212 24888887666666666655543
No 101
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=56.02 E-value=1.3e+02 Score=27.97 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=59.1
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.|..++++.+.-.+.+.+-|++-|.+.- +. ..-.+.++++.+..
T Consensus 19 ir~~~~~~a~~~a~al~~gGi~~iEvt~---~t---------------------------------~~a~~~I~~l~~~~ 62 (217)
T 3lab_A 19 IVIDDLVHAIPMAKALVAGGVHLLEVTL---RT---------------------------------EAGLAAISAIKKAV 62 (217)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEET---TS---------------------------------TTHHHHHHHHHHHC
T ss_pred EEcCCHHHHHHHHHHHHHcCCCEEEEeC---CC---------------------------------ccHHHHHHHHHHHC
Confidence 4677899999999999999999887742 11 12456677777766
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER 386 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~ 386 (524)
+..-+...+ .++.+.++...++ |..++..+- .++++++.
T Consensus 63 p~~~IGAGT----Vlt~~~a~~ai~A--GA~fivsP~--~~~evi~~ 101 (217)
T 3lab_A 63 PEAIVGAGT----VCTADDFQKAIDA--GAQFIVSPG--LTPELIEK 101 (217)
T ss_dssp TTSEEEEEC----CCSHHHHHHHHHH--TCSEEEESS--CCHHHHHH
T ss_pred CCCeEeecc----ccCHHHHHHHHHc--CCCEEEeCC--CcHHHHHH
Confidence 777666654 3578888888888 999886653 45555543
No 102
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=55.96 E-value=23 Score=34.25 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhhCCceEE-EEecCCCC-CCCHHHHHHHHcCCCCcceeecCcCCcCH---------HHHhhhCCCCCHHH
Q 041524 327 RFADLLDRLSLEFPEMRF-RYTSPHPK-DFPDELLYIMRDRPNVCKYIHLPAQTGNS---------AVLERMRRGYTREA 395 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~~~i-r~~s~~p~-~~~~elL~~l~~~~~G~~~i~igiESgs~---------~vL~~m~R~~t~e~ 395 (524)
++.+.++++.......-+ .++.-+|+ .-+.+.++.|.++ |+..|++|+.-.+| ...+.+..|.+.++
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~--GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~ 81 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDN--GADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSD 81 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHT--TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 455666666554332222 23333442 1246678888888 99999999443111 12334456899999
Q ss_pred HHHHHHHHHHh
Q 041524 396 YLDLVQKIRQI 406 (524)
Q Consensus 396 ~~~~v~~ir~~ 406 (524)
+.+.++.+|+.
T Consensus 82 ~~~~v~~ir~~ 92 (267)
T 3vnd_A 82 CFDIITKVRAQ 92 (267)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999986
No 103
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=55.93 E-value=6.2 Score=38.36 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=49.8
Q ss_pred CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCC
Q 041524 113 ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192 (524)
Q Consensus 113 ~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ge 192 (524)
.+||+|+++.+|+.++.-..+.+.. .+...+|+.|+-+...|+ +++ -+||++.+-
T Consensus 185 ~~aD~viiTGsTlvN~Ti~~lL~~~---------------------~~a~~vvl~GPS~p~~P~-lf~--~Gv~~l~G~- 239 (270)
T 2h1q_A 185 PECDYVYITCASVVDKTLPRLLELS---------------------RNARRITLVGPGTPLAPV-LFE--HGLQELSGF- 239 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHHHHHHT---------------------TTSSEEEEESTTCCCCGG-GGG--TTCSEEEEE-
T ss_pred hcCCEEEEEeeeeecCCHHHHHHhC---------------------ccCCeEEEEecChhhhHH-HHh--cCcCEEEEe-
Confidence 4899999999988887655444322 133489999999999995 664 478987654
Q ss_pred CcccHHHHHHHHhcCC
Q 041524 193 AYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 193 ge~~l~~Ll~~~~~g~ 208 (524)
--.+-..+++.+..|.
T Consensus 240 ~V~D~~~~~~~i~~Gg 255 (270)
T 2h1q_A 240 MVKDNARAFRIVAGAE 255 (270)
T ss_dssp EESCHHHHHHHHTTSS
T ss_pred EecCHHHHHHHHHcCC
Confidence 3345667777776654
No 104
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=55.90 E-value=95 Score=30.34 Aligned_cols=97 Identities=15% Similarity=0.261 Sum_probs=62.2
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCcccccc
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSE 313 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~ 313 (524)
..++|..+-||++. | ..+++.+++-++.+.+.|+..|.|.| .++..
T Consensus 138 v~~~i~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~Ga~~i~l~D-T~G~~-------------------- 183 (307)
T 1ydo_A 138 TRAYLSTVFGCPYE----------K---DVPIEQVIRLSEALFEFGISELSLGD-TIGAA-------------------- 183 (307)
T ss_dssp EEEEEECTTCBTTT----------B---CCCHHHHHHHHHHHHHHTCSCEEEEC-SSCCC--------------------
T ss_pred EEEEEEEEecCCcC----------C---CCCHHHHHHHHHHHHhcCCCEEEEcC-CCCCc--------------------
Confidence 34566666666632 2 23788999999999999999999885 33211
Q ss_pred CcccchhcccchhhHHHHHHHHHhhCCceEEEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 314 GFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 314 g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
.+..+.++++.+.+..|...+.+..-+ ...-....+..+. + |+.+++..+-
T Consensus 184 ----------~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~-a--Ga~~vd~tv~ 235 (307)
T 1ydo_A 184 ----------NPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQ-M--GITVFDGSAG 235 (307)
T ss_dssp ----------CHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHH-H--TCCEEEEBGG
T ss_pred ----------CHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHH-h--CCCEEEEccc
Confidence 135688899998887665556554211 1112344566664 4 9999987654
No 105
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=55.66 E-value=69 Score=29.68 Aligned_cols=100 Identities=10% Similarity=0.036 Sum_probs=67.5
Q ss_pred ceEEEEecCCC-CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHH-hhh-CCCCCHHHHHHHHHHHHHhCCCcEEEEeEE
Q 041524 341 EMRFRYTSPHP-KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVL-ERM-RRGYTREAYLDLVQKIRQIIPDVGLSSDFI 417 (524)
Q Consensus 341 ~~~ir~~s~~p-~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL-~~m-~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI 417 (524)
.|++.+.+..- ..--++.++.++++ |+..|.+........-. ..+ ....+.++..++-+.+++. |+.+.+.-.
T Consensus 9 ~mklg~~~~~~~~~~~~~~l~~~~~~--G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~i~~~~~ 84 (262)
T 3p6l_A 9 GWRLGMQSYSFHLFPLTEALDKTQEL--GLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASK--GIKIVGTGV 84 (262)
T ss_dssp TEEEEEEGGGGTTSCHHHHHHHHHHT--TCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHT--TCEEEEEEE
T ss_pred CcEEEEEecccCCCCHHHHHHHHHHc--CCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHc--CCeEEEEec
Confidence 46776664221 12247899999999 99999998754211000 001 2345677788888888898 988765432
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 418 CGFCGETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 418 ~G~PgET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
. ...+.+++++.++++..++...+.+.
T Consensus 85 ~--~~~~~~~~~~~i~~A~~lGa~~v~~~ 111 (262)
T 3p6l_A 85 Y--VAEKSSDWEKMFKFAKAMDLEFITCE 111 (262)
T ss_dssp E--CCSSTTHHHHHHHHHHHTTCSEEEEC
T ss_pred c--CCccHHHHHHHHHHHHHcCCCEEEec
Confidence 2 34678899999999999999988764
No 106
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=55.23 E-value=44 Score=27.21 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|...||++.. .+ ...+|+|++........ ..++.+.+++. ..
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~-g~~~~~~l~~~----------------~~ 78 (142)
T 3cg4_A 16 DAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMD-GWDTIRAILDN----------------SL 78 (142)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSC-HHHHHHHHHHT----------------TC
T ss_pred CHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCC-HHHHHHHHHhh----------------cc
Confidence 456678888999999997521 11 13589999975543322 22344443320 12
Q ss_pred CCCCEEEEEcccc-cccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 159 KHPPKIVVLGCMA-ERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 159 ~p~~~IvvgG~~a-t~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.+..+|++..... .......++ ....|++..+-....|.+.+..+
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQ-EYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGG-GGEEEEEESSCCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHh-cCccEEEeCCCCHHHHHHHHHHH
Confidence 3556665543333 222233333 23457777775555555555443
No 107
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=54.90 E-value=1.3e+02 Score=27.65 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=55.0
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
|..++++.++-++.+.+.|++-|.+...+ ..-.+.++++.+..+
T Consensus 23 r~~~~~~~~~~~~al~~gGv~~iel~~k~------------------------------------~~~~~~i~~l~~~~~ 66 (214)
T 1wbh_A 23 VVKKLEHAVPMAKALVAGGVRVLNVTLRT------------------------------------ECAVDAIRAIAKEVP 66 (214)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEESCS------------------------------------TTHHHHHHHHHHHCT
T ss_pred ECCCHHHHHHHHHHHHHcCCCEEEEeCCC------------------------------------hhHHHHHHHHHHHCc
Confidence 56678889999999999999988776311 012445665655555
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE 385 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~ 385 (524)
..-+...+ .++.+.++...++ |...+|.| + .+.++.+
T Consensus 67 ~~~vgagt----vi~~d~~~~A~~a--GAd~v~~p-~-~d~~v~~ 103 (214)
T 1wbh_A 67 EAIVGAGT----VLNPQQLAEVTEA--GAQFAISP-G-LTEPLLK 103 (214)
T ss_dssp TSEEEEES----CCSHHHHHHHHHH--TCSCEEES-S-CCHHHHH
T ss_pred CCEEeeCE----EEEHHHHHHHHHc--CCCEEEcC-C-CCHHHHH
Confidence 55555543 3566777887777 99999998 3 4554443
No 108
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=54.84 E-value=38 Score=26.19 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeecc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCA 124 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~ 124 (524)
|....+.+...|...||++.. .+. ..+|+|++....
T Consensus 10 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~ 55 (119)
T 2j48_A 10 EDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP 55 (119)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC
Confidence 455567888889999997531 211 268999997654
No 109
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=54.69 E-value=79 Score=26.13 Aligned_cols=98 Identities=7% Similarity=0.151 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHCCC--eec-cC------------------CCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhh
Q 041524 89 NVNDMEIVLSIMKNAGY--SEV-IN------------------VPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREW 147 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy--~~~-~~------------------~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~ 147 (524)
|....+.+...|.+.|| ++. +. ....+|+|++....... ...++.+.+++.
T Consensus 13 d~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~-~g~~~~~~lr~~------- 84 (152)
T 3heb_A 13 DLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDM-TGIDILKLVKEN------- 84 (152)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSS-BHHHHHHHHHHS-------
T ss_pred CHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCC-cHHHHHHHHHhc-------
Confidence 45556777888888887 331 11 12468999997654332 233344444321
Q ss_pred hhcccccccccCCCCEE-EEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 148 KKNVATGRSQSKHPPKI-VVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 148 ~~~~~~~~~~~~p~~~I-vvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
...++.+| ++.+........+.++ ....|++..+-....|.+.++.+
T Consensus 85 ---------~~~~~~pii~~t~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 85 ---------PHTRRSPVVILTTTDDQREIQRCYD-LGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp ---------TTTTTSCEEEEESCCCHHHHHHHHH-TTCSEEEECCSSHHHHHHHHHHH
T ss_pred ---------ccccCCCEEEEecCCCHHHHHHHHH-CCCcEEEeCCCCHHHHHHHHHHH
Confidence 12344444 4555433333334444 45678888887766666666665
No 110
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=54.67 E-value=73 Score=24.71 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+ ...+|+|++........ ..++.+.+++.
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~-g~~~~~~l~~~------------------ 70 (116)
T 3a10_A 10 EPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGIS-GLEVAGEIRKK------------------ 70 (116)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSC-HHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCC-HHHHHHHHHcc------------------
Confidence 345567788888888987521 11 13689999976543322 23344444322
Q ss_pred CCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHH
Q 041524 159 KHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLE 202 (524)
Q Consensus 159 ~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~ 202 (524)
.|..+|+ +.+. .... ...++ ....|++..+-....+...+.
T Consensus 71 ~~~~~ii~~s~~-~~~~-~~~~~-~g~~~~l~Kp~~~~~l~~~i~ 112 (116)
T 3a10_A 71 KKDAKIILLTAY-SHYR-SDMSS-WAADEYVVKSFNFDELKEKVK 112 (116)
T ss_dssp CTTCCEEEEESC-GGGG-GCGGG-GGSSEEEECCSSTHHHHHHHH
T ss_pred CCCCeEEEEECC-cchH-HHHHh-ccccceEECCCCHHHHHHHHH
Confidence 2444444 4543 3222 23332 344678877755554444443
No 111
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=54.63 E-value=83 Score=25.36 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=53.9
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhh
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKR 145 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~ 145 (524)
+.+|.++. -|....+.+...|.+.||++.. .+. ..+|+|+ +. .....++.+.+++
T Consensus 18 ~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi---~~--~~~g~~~~~~l~~------ 82 (137)
T 2pln_A 18 SMRVLLIE----KNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM---VS--DKNALSFVSRIKE------ 82 (137)
T ss_dssp CSEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE---EC--STTHHHHHHHHHH------
T ss_pred CCeEEEEe----CCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE---Ec--CccHHHHHHHHHh------
Confidence 44566643 3566678888999999997531 111 3689988 21 2122233333321
Q ss_pred hhhhcccccccccCC-CCEEEEEccccc-ccHHHHHhhCCcceEEECCC-CcccHHHHHHHHh
Q 041524 146 EWKKNVATGRSQSKH-PPKIVVLGCMAE-RLKDKILDADKMVDVVCGPD-AYRDLPRLLEEVD 205 (524)
Q Consensus 146 ~~~~~~~~~~~~~~p-~~~IvvgG~~at-~~~e~~l~~~~~vD~Vv~ge-ge~~l~~Ll~~~~ 205 (524)
. + ..+||+...+.. ......++ ....|++..+- ....|...+..+.
T Consensus 83 ------------~-~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 83 ------------K-HSSIVVLVSSDNPTSEEEVHAFE-QGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp ------------H-STTSEEEEEESSCCHHHHHHHHH-TTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred ------------c-CCCccEEEEeCCCCHHHHHHHHH-cCCceeeeCCCCCHHHHHHHHHHHH
Confidence 1 4 555555433332 22334443 45567888775 5555555555443
No 112
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=54.54 E-value=75 Score=24.80 Aligned_cols=94 Identities=10% Similarity=0.023 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHCCCeec-cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEV-INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~-~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
....+.+...|...||++. +.+. ..+|+|++........+ .++.+.+++ ..
T Consensus 10 ~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g-~~~~~~l~~------------------~~ 70 (121)
T 2pl1_A 10 ALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDG-LSLIRRWRS------------------ND 70 (121)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCH-HHHHHHHHH------------------TT
T ss_pred HHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCH-HHHHHHHHh------------------cC
Confidence 3456678888888899752 1221 36899999655433222 233333321 12
Q ss_pred CCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 160 HPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 160 p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
+..+|+ +.+..........++ ....|++..+-....+...++.
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~i~~ 114 (121)
T 2pl1_A 71 VSLPILVLTARESWQDKVEVLS-AGADDYVTKPFHIEEVMARMQA 114 (121)
T ss_dssp CCSCEEEEESCCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHH-cCccceEECCCCHHHHHHHHHH
Confidence 444444 455433222334443 3556888887655555555444
No 113
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=54.45 E-value=57 Score=26.16 Aligned_cols=99 Identities=7% Similarity=-0.057 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|. .||++.. .+. ..+|+|++....... ...++.+.+++. ..
T Consensus 13 ~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~-~g~~~~~~l~~~----------------~~ 74 (133)
T 3nhm_A 13 SWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGM-DGYALCGHFRSE----------------PT 74 (133)
T ss_dssp CHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSS-CHHHHHHHHHHS----------------TT
T ss_pred CHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCC-CHHHHHHHHHhC----------------Cc
Confidence 3445566666666 7886521 111 468999997554332 233344444321 11
Q ss_pred CCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhc
Q 041524 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
.+..+|++............++ ....|++..+-....|.+.++.+..
T Consensus 75 ~~~~pii~~s~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 75 LKHIPVIFVSGYAPRTEGPADQ-PVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp TTTCCEEEEESCCC-----TTS-CCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCcHhHHHHhh-cCCceEEeccCCHHHHHHHHHHHHh
Confidence 2455555443333322233332 3445788888776666666665543
No 114
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=53.38 E-value=35 Score=32.55 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcccC
Q 041524 394 EAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHRNY 460 (524)
Q Consensus 394 e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~~~ 460 (524)
..+..+...+++. +..+...++-+ .-.+.++++-+.+.++..+.+.+|....|..+.+.+
T Consensus 153 ~~~~~~a~~l~~~--~~~v~~g~~e~-----~P~~~~~l~~l~~~G~~~v~v~P~~l~aG~h~~~Di 212 (264)
T 2xwp_A 153 AAYACLDHMMTAQ--RFPARVGAVES-----YPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDM 212 (264)
T ss_dssp HHHHHHHHHHHHT--TCSEEEEESSS-----SSCHHHHHHHHHHHTCCEEEEEECSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhh--CCCEEEEEeCC-----CCCHHHHHHHHHHCCCCEEEEEeeecccCcchhhhc
Confidence 4555566666666 32333333323 334677888888889999999999999998775433
No 115
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=52.65 E-value=59 Score=28.71 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+....+.+...|...||++.. .+ ...+|+|++.-...... ..++...+++ .
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~-g~~~~~~l~~------------------~ 73 (208)
T 1yio_A 13 DMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMS-GIELQEQLTA------------------I 73 (208)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSC-HHHHHHHHHH------------------T
T ss_pred CHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCC-HHHHHHHHHh------------------c
Confidence 344567778888888987521 11 24689999975543322 2334444432 1
Q ss_pred CCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 159 KHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 159 ~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.|+.+|+ +.|..........++ ....||+..+-....+...+..+
T Consensus 74 ~~~~~ii~ls~~~~~~~~~~a~~-~Ga~~~l~Kp~~~~~L~~~i~~~ 119 (208)
T 1yio_A 74 SDGIPIVFITAHGDIPMTVRAMK-AGAIEFLPKPFEEQALLDAIEQG 119 (208)
T ss_dssp TCCCCEEEEESCTTSCCCHHHHH-TTEEEEEESSCCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHH-CCCcEEEeCCCCHHHHHHHHHHH
Confidence 3555544 555443333445554 45567888876555555555444
No 116
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=52.07 E-value=1.2e+02 Score=28.81 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcC-----HHHHh----hhCCCCCHHHHHHHHHHHHHhCCCcEEEE------------
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGN-----SAVLE----RMRRGYTREAYLDLVQKIRQIIPDVGLSS------------ 414 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs-----~~vL~----~m~R~~t~e~~~~~v~~ir~~~pgi~i~~------------ 414 (524)
.++++.|.++ |+..|.+|+--.+ +.+.+ .+..|.+.+.+.+.++.+|+..|++.+..
T Consensus 34 ~~~~~~l~~~--G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~ 111 (262)
T 2ekc_A 34 LKAFKEVLKN--GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGL 111 (262)
T ss_dssp HHHHHHHHHT--TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCH
T ss_pred HHHHHHHHHc--CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhH
Confidence 4577788888 9999999986544 33333 35667889999999999998865554332
Q ss_pred ------------e-EEEcCCCCCHHHHHHHHHHHHHcCCCe
Q 041524 415 ------------D-FICGFCGETEEEHADTLTLMKAVGYDM 442 (524)
Q Consensus 415 ------------~-fI~G~PgET~ed~~~tl~~l~~l~~d~ 442 (524)
| +| +|.-+.++..+.++.+++.+++.
T Consensus 112 ~~f~~~~~~aG~dgvi--i~dl~~ee~~~~~~~~~~~gl~~ 150 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFI--VPDLPPEEAEELKAVMKKYVLSF 150 (262)
T ss_dssp HHHHHHHHHTTCCEEE--CTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCEEE--ECCCCHHHHHHHHHHHHHcCCcE
Confidence 1 22 24555677777778888777654
No 117
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=50.98 E-value=83 Score=25.05 Aligned_cols=101 Identities=10% Similarity=0.129 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHCCCeec-cCC--------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 89 NVNDMEIVLSIMKNAGYSEV-INV--------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~-~~~--------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
|....+.+...|.+.|+.+. +.+ ...+|+|++...... ....++.+.+++ ..
T Consensus 12 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~------------------~~ 72 (135)
T 3eqz_A 12 DTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPD-MDGIEVIRHLAE------------------HK 72 (135)
T ss_dssp CHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTT-THHHHHHHHHHH------------------TT
T ss_pred CHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccCCCEEEEeCCCCC-CCHHHHHHHHHh------------------CC
Confidence 45566778888888876532 111 123899999765433 233334444332 23
Q ss_pred CCCEEEEEcccccccH---HHHHh--hCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 160 HPPKIVVLGCMAERLK---DKILD--ADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 160 p~~~IvvgG~~at~~~---e~~l~--~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
+..+|++.....+... +...+ .....|++..+-....+.+.++.+..|.
T Consensus 73 ~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 73 SPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp CCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 6666665443333110 11111 1233588888877777777777765543
No 118
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=50.69 E-value=62 Score=28.91 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+ ...+|+|++.-...... ..++...+++ .
T Consensus 11 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~-g~~~~~~lr~------------------~ 71 (225)
T 1kgs_A 11 ERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD-GWEILKSMRE------------------S 71 (225)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSC-HHHHHHHHHH------------------T
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCC-HHHHHHHHHh------------------c
Confidence 344567788888888997521 11 13689999976543322 2334444432 1
Q ss_pred CCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHhc
Q 041524 159 KHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 159 ~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
.|+.+|++...+... .....++ ....|++..+-....+...+..+..
T Consensus 72 ~~~~~ii~ls~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 72 GVNTPVLMLTALSDVEYRVKGLN-MGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp TCCCCEEEEESSCHHHHHHHTCC-CCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHh-CCccEEEeCCCCHHHHHHHHHHHHh
Confidence 355555544333321 1222222 3456788887666666655555543
No 119
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=50.51 E-value=89 Score=24.45 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|...||++.. .+ ...+|+|++........+ .+ .++.+ + +
T Consensus 11 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g-~~---~~~~l---~------------~- 70 (122)
T 1zgz_A 11 EPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENG-LM---LTRAL---R------------E- 70 (122)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCH-HH---HHHHH---H------------T-
T ss_pred CHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCCh-HH---HHHHH---H------------h-
Confidence 344567788888888987521 11 136899998754433222 22 33333 1 1
Q ss_pred CCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHH
Q 041524 159 KHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLE 202 (524)
Q Consensus 159 ~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~ 202 (524)
.+..+|++ .+..........++ ....|++..+-....+...+.
T Consensus 71 ~~~~~ii~~s~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~l~~~i~ 114 (122)
T 1zgz_A 71 RSTVGIILVTGRSDRIDRIVGLE-MGADDYVTKPLELRELVVRVK 114 (122)
T ss_dssp TCCCEEEEEESSCCHHHHHHHHH-HTCSEEEESSCCHHHHHHHHH
T ss_pred cCCCCEEEEECCCChhhHHHHHH-hCHHHHccCCCCHHHHHHHHH
Confidence 24555554 44332222233343 345688888755444444443
No 120
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=50.36 E-value=1.3e+02 Score=32.09 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEE
Q 041524 267 SIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRY 346 (524)
Q Consensus 267 ~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~ 346 (524)
+.++.++.+.+.|+.+|.+++-+-... ..|.+ .++++++.+.....-+
T Consensus 453 ~~~e~a~~~~~~Ga~~il~t~~~~dG~----------~~G~d--------------------~~li~~l~~~~~iPVI-- 500 (555)
T 1jvn_A 453 GVWELTRACEALGAGEILLNCIDKDGS----------NSGYD--------------------LELIEHVKDAVKIPVI-- 500 (555)
T ss_dssp EHHHHHHHHHHTTCCEEEECCGGGTTT----------CSCCC--------------------HHHHHHHHHHCSSCEE--
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCC----------CCCCC--------------------HHHHHHHHHhCCccEE--
Confidence 345677777788999998765332100 00211 3455566554322111
Q ss_pred ecCCCCCCCHHHHHHHHc-CCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEE
Q 041524 347 TSPHPKDFPDELLYIMRD-RPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGL 412 (524)
Q Consensus 347 ~s~~p~~~~~elL~~l~~-~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i 412 (524)
..-..-+.+-+..+.+ . |+..+.+|= ..+....+.+++.+. +++. |+.+
T Consensus 501 --asGGi~s~~d~~~~~~~~--G~~gvivg~--------a~~~~~~~~~e~~~~---l~~~--gi~~ 550 (555)
T 1jvn_A 501 --ASSGAGVPEHFEEAFLKT--RADACLGAG--------MFHRGEFTVNDVKEY---LLEH--GLKV 550 (555)
T ss_dssp --ECSCCCSHHHHHHHHHHS--CCSEEEESH--------HHHTTSCCHHHHHHH---HHHT--TCCC
T ss_pred --EECCCCCHHHHHHHHHhc--CChHHHHHH--------HHHcCCCCHHHHHHH---HHHC--CCcc
Confidence 1223335454555444 6 898888872 235566777776654 4565 6544
No 121
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=50.03 E-value=88 Score=24.27 Aligned_cols=95 Identities=17% Similarity=0.082 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|...||++.. .+. ..+|+|++........+ .++.+.+++.
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g-~~~~~~l~~~------------------ 70 (120)
T 2a9o_A 10 EKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG-LEVAKTIRKT------------------ 70 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCH-HHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCH-HHHHHHHHhC------------------
Confidence 344567778888888987521 111 26899999755433222 2333333321
Q ss_pred CCCC-EEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 159 KHPP-KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 159 ~p~~-~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
++. .|++.+..........++ ....|++..+-....+...+..+
T Consensus 71 -~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~Kp~~~~~l~~~i~~~ 115 (120)
T 2a9o_A 71 -SSVPILMLSAKDSEFDKVIGLE-LGADDYVTKPFSNRELQARVKAL 115 (120)
T ss_dssp -CCCCEEEEESCCSHHHHHHHHH-HTCSEEEESSCCHHHHHHHHHHH
T ss_pred -CCCCEEEEecCCchHHHHHHHh-CCHhheEeCCCCHHHHHHHHHHH
Confidence 333 444555433222233343 34568888876655555555443
No 122
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=49.98 E-value=1.1e+02 Score=28.14 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=51.9
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc-CCCCC-------HH
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG-FCGET-------EE 426 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G-~PgET-------~e 426 (524)
-++.++.++++ |+..|.+.... + +.....++.+.+.+. |+.+.+--..+ +...+ .+
T Consensus 20 ~~~~l~~~~~~--G~~~vEl~~~~-----~-------~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~~~d~~~r~~~~~ 83 (275)
T 3qc0_A 20 FAEAVDICLKH--GITAIAPWRDQ-----V-------AAIGLGEAGRIVRAN--GLKLTGLCRGGFFPAPDASGREKAID 83 (275)
T ss_dssp HHHHHHHHHHT--TCCEEECBHHH-----H-------HHHCHHHHHHHHHHH--TCEESCEEEEECCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCEEEecccc-----c-------cccCHHHHHHHHHHc--CCceEEeecCCCcCCCCHHHHHHHHH
Confidence 37899999999 99999986531 1 123455666677788 88765332222 22222 36
Q ss_pred HHHHHHHHHHHcCCCeEEEEe
Q 041524 427 EHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 427 d~~~tl~~l~~l~~d~~~i~~ 447 (524)
.+++.++++..++...+.+.+
T Consensus 84 ~~~~~i~~a~~lG~~~v~~~~ 104 (275)
T 3qc0_A 84 DNRRAVDEAAELGADCLVLVA 104 (275)
T ss_dssp HHHHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEee
Confidence 778889999999999887764
No 123
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=48.82 E-value=90 Score=24.88 Aligned_cols=98 Identities=10% Similarity=0.117 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHCCC--eec-cCC---------C-------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhh
Q 041524 89 NVNDMEIVLSIMKNAGY--SEV-INV---------P-------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKK 149 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy--~~~-~~~---------~-------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~ 149 (524)
|....+.+...|.+.|| .+. +.+ . ..+|+|++....... ...++.+.+++.
T Consensus 11 ~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~-~g~~~~~~l~~~--------- 80 (140)
T 1k68_A 11 NKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKK-DGREVLAEIKSD--------- 80 (140)
T ss_dssp CHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSS-CHHHHHHHHHHS---------
T ss_pred CHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcc-cHHHHHHHHHcC---------
Confidence 45567788888888888 431 111 1 468999997554332 223344444321
Q ss_pred cccccccccCCCCE-EEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 150 NVATGRSQSKHPPK-IVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 150 ~~~~~~~~~~p~~~-IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
...++.+ |++.+........+.++ ....|++..+-....+...+..+
T Consensus 81 -------~~~~~~pii~ls~~~~~~~~~~~~~-~g~~~~l~kP~~~~~l~~~i~~~ 128 (140)
T 1k68_A 81 -------PTLKRIPVVVLSTSINEDDIFHSYD-LHVNCYITKSANLSQLFQIVKGI 128 (140)
T ss_dssp -------TTGGGSCEEEEESCCCHHHHHHHHH-TTCSEEEECCSSHHHHHHHHHHH
T ss_pred -------cccccccEEEEecCCcHHHHHHHHH-hchhheecCCCCHHHHHHHHHHH
Confidence 1113344 44555433323334443 45567888876666665555554
No 124
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=48.52 E-value=37 Score=27.99 Aligned_cols=97 Identities=11% Similarity=0.212 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
....+.+...|.+.||++.. .+. ..+|+|++........ ..++.+.+++. ...
T Consensus 18 ~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~-g~~~~~~l~~~----------------~~~ 80 (147)
T 2zay_A 18 LPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKIS-GMDLFNSLKKN----------------PQT 80 (147)
T ss_dssp GGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSC-HHHHHHHHHTS----------------TTT
T ss_pred HHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCC-HHHHHHHHHcC----------------ccc
Confidence 34457778888888987531 111 2689999976543322 23333333320 123
Q ss_pred CCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 160 HPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 160 p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
+..+|+ +.+..........++ ....|++..+-....|...+..+
T Consensus 81 ~~~pii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~L~~~i~~~ 125 (147)
T 2zay_A 81 ASIPVIALSGRATAKEEAQLLD-MGFIDFIAKPVNAIRLSARIKRV 125 (147)
T ss_dssp TTSCEEEEESSCCHHHHHHHHH-HTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHh-CCCCEEEeCCCCHHHHHHHHHHH
Confidence 555555 444433222333444 34568888876665565555544
No 125
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=48.33 E-value=64 Score=25.49 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
....+.+...|.+.||++.. .+ ...+|+|++........ ..++...+++. ...
T Consensus 12 ~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~-g~~~~~~l~~~----------------~~~ 74 (127)
T 2jba_A 12 APIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGS-GIQFIKHLRRE----------------SMT 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEE-HHHHHHHHHTS----------------TTT
T ss_pred HHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecCCCCCC-HHHHHHHHHhC----------------ccc
Confidence 44567788889889997521 11 13689999865443322 22333333211 112
Q ss_pred CCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 160 HPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 160 p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
++.+|++ .+..........++ ....|++..+-....+.+.+..+
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~l~~~i~~~ 119 (127)
T 2jba_A 75 RDIPVVMLTARGEEEDRVRGLE-TGADDCITKPFSPKELVARIKAV 119 (127)
T ss_dssp TTSCEEEEEETTHHHHHHTTCC-CSCSEEEEESCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHh-cCCCeEEeCCCCHHHHHHHHHHH
Confidence 4455544 44322111122222 34467888876555555555444
No 126
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=48.12 E-value=94 Score=25.21 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+....+.+...|...||++.. .+. ..+|+|++........+ .++.+.+++ .
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g-~~l~~~l~~-----------------~- 73 (136)
T 2qzj_A 13 DKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDG-WTLCKKIRN-----------------V- 73 (136)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEH-HHHHHHHHT-----------------T-
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCH-HHHHHHHcc-----------------C-
Confidence 345567788888888887521 111 36899999765433222 233333321 1
Q ss_pred CCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
..-..|++.+..........++ ....|++..+-....+...+..+
T Consensus 74 ~~~~ii~ls~~~~~~~~~~~~~-~ga~~~l~KP~~~~~L~~~l~~~ 118 (136)
T 2qzj_A 74 TTCPIVYMTYINEDQSILNALN-SGGDDYLIKPLNLEILYAKVKAI 118 (136)
T ss_dssp CCCCEEEEESCCCHHHHHHHHH-TTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHH-cCCcEEEECCCCHHHHHHHHHHH
Confidence 1223444555433222334444 45678888886665665555544
No 127
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=47.66 E-value=1.8e+02 Score=27.23 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=57.8
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc---C--CCCC-----
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG---F--CGET----- 424 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G---~--PgET----- 424 (524)
-++.++.++++ |+..|.+......+. +. ....+.++..++-+.+++. |+.+.+--..+ + ....
T Consensus 32 ~~~~l~~~~~~--G~~~iEl~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~~l~~~d~~~r~ 104 (295)
T 3cqj_A 32 WLERLQLAKTL--GFDFVEMSVDETDER-LS--RLDWSREQRLALVNAIVET--GVRVPSMCLSAHRRFPLGSEDDAVRA 104 (295)
T ss_dssp HHHHHHHHHHT--TCSEEEEECCSSHHH-HG--GGGCCHHHHHHHHHHHHHH--CCEEEEEEEGGGGTSCTTCSSHHHHH
T ss_pred HHHHHHHHHhc--CCCEEEEecCCcccc-cC--cccCCHHHHHHHHHHHHHc--CCeEEEEecCcccCCCCCCCCHHHHH
Confidence 47799999999 999999987654221 11 1134667788888888999 99876532211 1 1112
Q ss_pred --HHHHHHHHHHHHHcCCCeEEEE
Q 041524 425 --EEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 425 --~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
.+.+++.++++.+++...+.+.
T Consensus 105 ~~~~~~~~~i~~A~~lG~~~v~~~ 128 (295)
T 3cqj_A 105 QGLEIMRKAIQFAQDVGIRVIQLA 128 (295)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3567888899999999987653
No 128
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=47.52 E-value=1.9e+02 Score=27.40 Aligned_cols=74 Identities=12% Similarity=0.045 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcC------CCCC-----
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF------CGET----- 424 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~------PgET----- 424 (524)
++ ++.+++. |+..|.+...... ....+...++.+.+.+. |+.+.+ . .++ .+.+
T Consensus 40 ~~-l~~~~~~--G~~~vEl~~~~~~---------~~~~~~~~~l~~~l~~~--gl~i~~-~-~~~~~~~~l~~~d~~~r~ 103 (309)
T 2hk0_A 40 PY-IEKVAKL--GFDIIEVAAHHIN---------EYSDAELATIRKSAKDN--GIILTA-G-IGPSKTKNLSSEDAAVRA 103 (309)
T ss_dssp HH-HHHHHHT--TCSEEEEEHHHHT---------TSCHHHHHHHHHHHHHT--TCEEEE-E-CCCCSSSCSSCSCHHHHH
T ss_pred HH-HHHHHHh--CCCEEEeccCCcc---------ccchhhHHHHHHHHHHc--CCeEEE-e-cCCCCCCCCCCCCHHHHH
Confidence 56 9999998 9999998754211 11235666777778888 998887 2 232 2222
Q ss_pred --HHHHHHHHHHHHHcCCCeEEE
Q 041524 425 --EEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 425 --~ed~~~tl~~l~~l~~d~~~i 445 (524)
.+.+++.++++.+++...+..
T Consensus 104 ~~~~~~~~~i~~A~~lG~~~v~~ 126 (309)
T 2hk0_A 104 AGKAFFERTLSNVAKLDIHTIGG 126 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEe
Confidence 267788899999999998763
No 129
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=47.27 E-value=1e+02 Score=24.81 Aligned_cols=99 Identities=11% Similarity=0.146 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCC-Ceec--cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 89 NVNDMEIVLSIMKNAG-YSEV--INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 89 N~~d~e~i~~~L~~~G-y~~~--~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
+....+.+...|...| |..+ +.+. ..+|+|++........ ..++.+.+++
T Consensus 12 ~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~-g~~~~~~l~~----------------- 73 (133)
T 3b2n_A 12 QNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMT-GLEVLAEIRK----------------- 73 (133)
T ss_dssp CHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSC-HHHHHHHHHH-----------------
T ss_pred CHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCC-HHHHHHHHHH-----------------
Confidence 3445566777777665 3221 1221 2689999965443322 2233333332
Q ss_pred ccCCCCEEEEEccccc-ccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 157 QSKHPPKIVVLGCMAE-RLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at-~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
..|..+|++...+.+ ....+.++ ....|++..+-....+.+.++.+..+
T Consensus 74 -~~~~~~ii~ls~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 74 -KHLNIKVIIVTTFKRPGYFEKAVV-NDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp -TTCSCEEEEEESCCCHHHHHHHHH-TTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred -HCCCCcEEEEecCCCHHHHHHHHH-cCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 235666665443333 22334443 45678888886666666666655444
No 130
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=46.22 E-value=61 Score=26.86 Aligned_cols=101 Identities=9% Similarity=0.020 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHC-CCeec--cCC---------C-CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccc
Q 041524 89 NVNDMEIVLSIMKNA-GYSEV--INV---------P-ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGR 155 (524)
Q Consensus 89 N~~d~e~i~~~L~~~-Gy~~~--~~~---------~-~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 155 (524)
|....+.+...|.+. ||..+ +.+ . ..+|+|++........ ..++.+.+++
T Consensus 12 ~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~-g~~~~~~l~~---------------- 74 (154)
T 2qsj_A 12 HHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAE-AIDGLVRLKR---------------- 74 (154)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHH----------------
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCc-hHHHHHHHHH----------------
Confidence 455667788888887 88421 121 1 4589999965432211 2223333332
Q ss_pred cccCCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCCC
Q 041524 156 SQSKHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQK 209 (524)
Q Consensus 156 ~~~~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~~ 209 (524)
..|..+|++....... .....++ ....|++..+-....|...+..+..+..
T Consensus 75 --~~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 75 --FDPSNAVALISGETDHELIRAALE-AGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp --HCTTSEEEEC-----CHHHHHHHH-TTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred --hCCCCeEEEEeCCCCHHHHHHHHH-ccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 1366677665444332 2233443 3456777777666666666666655554
No 131
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=46.17 E-value=1.3e+02 Score=25.36 Aligned_cols=95 Identities=6% Similarity=0.021 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHCCCeec--cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEV--INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~--~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|..--+.+...|++.||+.+ +.+. ..+|+|++.-....-. ..++.+.||.. .
T Consensus 21 ~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~md-G~el~~~ir~~----------------~ 83 (134)
T 3to5_A 21 FSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQ-GIDLLKNIRAD----------------E 83 (134)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSC-HHHHHHHHHHS----------------T
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCC-HHHHHHHHHhC----------------C
Confidence 44556788889999999642 2232 3689999976655433 33455555432 1
Q ss_pred cCCCCE-EEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHH
Q 041524 158 SKHPPK-IVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLL 201 (524)
Q Consensus 158 ~~p~~~-IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll 201 (524)
..+..+ |++.|..-.....+.++ ....||+.-+=....|.+.+
T Consensus 84 ~~~~ipvI~lTa~~~~~~~~~~~~-~Ga~~yl~KP~~~~~L~~~i 127 (134)
T 3to5_A 84 ELKHLPVLMITAEAKREQIIEAAQ-AGVNGYIVKPFTAATLKEKL 127 (134)
T ss_dssp TTTTCCEEEEESSCCHHHHHHHHH-TTCCEEEESSCCHHHHHHHH
T ss_pred CCCCCeEEEEECCCCHHHHHHHHH-CCCCEEEECCCCHHHHHHHH
Confidence 224444 44555443333334444 45568888874433333333
No 132
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=46.01 E-value=2.3e+02 Score=27.87 Aligned_cols=146 Identities=12% Similarity=0.161 Sum_probs=79.0
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+++.+++.++.+.+.|..-|-+-++...- |... .+. .+ ...+--.++..+++.+.+..
T Consensus 44 ~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrP-------------ga~~--~~~--~V-~~~eE~~Rv~pvI~~l~~~~- 104 (314)
T 3tr9_A 44 PHLDLNSALRTAEKMVDEGADILDIGGEATNP-------------FVDI--KTD--SP-STQIELDRLLPVIDAIKKRF- 104 (314)
T ss_dssp BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCT-------------TC---------CH-HHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-------------Cccc--ccC--CC-CHHHHHHHHHHHHHHHHhhC-
Confidence 66789999999999999999977776543221 1100 000 00 00111234555666665542
Q ss_pred ceEEEEecCCC-------------------CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC-------CHH
Q 041524 341 EMRFRYTSPHP-------------------KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY-------TRE 394 (524)
Q Consensus 341 ~~~ir~~s~~p-------------------~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~-------t~e 394 (524)
...+.+.+.+| .. .++++++.+++ ||..+-+..+ |.|+ .|.... -.+
T Consensus 105 ~vpISIDT~~~~Va~aAl~aGa~iINDVsg~~-~~~m~~v~a~~--g~~vVlMh~~-G~P~---tmq~~~~ydvv~ev~~ 177 (314)
T 3tr9_A 105 PQLISVDTSRPRVMREAVNTGADMINDQRALQ-LDDALTTVSAL--KTPVCLMHFP-SETR---KPGSTTHFYFLQSVKK 177 (314)
T ss_dssp CSEEEEECSCHHHHHHHHHHTCCEEEETTTTC-STTHHHHHHHH--TCCEEEECCC-CTTC---CTTSSCHHHHHHHHHH
T ss_pred CCeEEEeCCCHHHHHHHHHcCCCEEEECCCCC-chHHHHHHHHh--CCeEEEECCC-CCCc---ccccccccchHHHHHH
Confidence 34565555322 11 34566666666 6666554433 1111 111110 134
Q ss_pred HHHHHHHHHHHhCCCcE---EEEeEEEc---CCCCCHHHHHHHHHHH
Q 041524 395 AYLDLVQKIRQIIPDVG---LSSDFICG---FCGETEEEHADTLTLM 435 (524)
Q Consensus 395 ~~~~~v~~ir~~~pgi~---i~~~fI~G---~PgET~ed~~~tl~~l 435 (524)
.+.+.++.+.++ ||. |..|=-+| | |.|.++-.++++-+
T Consensus 178 ~l~~~i~~a~~~--GI~~~~IilDPG~G~~~F-~Kt~~~n~~lL~~l 221 (314)
T 3tr9_A 178 ELQESIQRCKKA--GISEDRIIIDPGFGQGNY-GKNVSENFYLLNKL 221 (314)
T ss_dssp HHHHHHHHHHHT--TCCGGGEEEECCCCSGGG-CCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc--CCCHhHEEEeCCCCchhh-cCCHHHHHHHHHHH
Confidence 566778888888 884 77777678 7 67766544444433
No 133
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=45.57 E-value=1.6e+02 Score=28.00 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=76.3
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+++.+++.++.+.+.|..-|-+-+.. - .. .....+.+++..+... .
T Consensus 20 ~~~~~~~a~~~a~~~v~~GAdiIDIg~g~---~------------~v---------------~~~ee~~rvv~~i~~~-~ 68 (262)
T 1f6y_A 20 QERDPAPVQEWARRQEEGGARALDLNVGP---A------------VQ---------------DKVSAMEWLVEVTQEV-S 68 (262)
T ss_dssp HHTCHHHHHHHHHHHHHHTCSEEEEBCC----------------------------------CHHHHHHHHHHHHHTT-C
T ss_pred hcCCHHHHHHHHHHHHHCCCcEEEECCCC---C------------CC---------------ChHHHHHHHHHHHHHh-C
Confidence 45789999999999999999777665411 1 00 0123455555555543 2
Q ss_pred ceEEEEecCCCC----------------CC----CH--HHHHHHHcCCCCcceeecCcC-CcCHHHHhhhCCCCCHHHHH
Q 041524 341 EMRFRYTSPHPK----------------DF----PD--ELLYIMRDRPNVCKYIHLPAQ-TGNSAVLERMRRGYTREAYL 397 (524)
Q Consensus 341 ~~~ir~~s~~p~----------------~~----~~--elL~~l~~~~~G~~~i~igiE-Sgs~~vL~~m~R~~t~e~~~ 397 (524)
...+.+.+.+|. ++ ++ +++++.+++ |+..+-+... -|.++..+. ..+-..
T Consensus 69 ~~pisIDT~~~~v~~aAl~a~~Ga~iINdvs~~~d~~~~~~~~~a~~--~~~vvlmh~~~~G~p~t~~~-----~~~~~~ 141 (262)
T 1f6y_A 69 NLTLCLDSTNIKAIEAGLKKCKNRAMINSTNAEREKVEKLFPLAVEH--GAALIGLTMNKTGIPKDSDT-----RLAFAM 141 (262)
T ss_dssp CSEEEEECSCHHHHHHHHHHCSSCEEEEEECSCHHHHHHHHHHHHHT--TCEEEEESCCSSCSCSSHHH-----HHHHHH
T ss_pred CCeEEEeCCCHHHHHHHHhhCCCCCEEEECCCCcccHHHHHHHHHHh--CCcEEEEcCCCCCCCCCHHH-----HHHHHH
Confidence 345555543210 01 12 566666776 6666555541 122111110 124456
Q ss_pred HHHHHHHHhCCCcE---EEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 398 DLVQKIRQIIPDVG---LSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 398 ~~v~~ir~~~pgi~---i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
+.++.+.++ |+. |..|=.+|..|-+.+.-.++++.+..+
T Consensus 142 ~~~~~a~~~--Gi~~~~IilDPg~g~~g~~~~~~~~~l~~l~~l 183 (262)
T 1f6y_A 142 ELVAAADEF--GLPMEDLYIDPLILPANVAQDHAPEVLKTLQQI 183 (262)
T ss_dssp HHHHHHHHH--TCCGGGEEEECCCCCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCcccEEEeCCCCcCCCChHHHHHHHHHHHHH
Confidence 778888888 884 888887774565555444444444443
No 134
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=45.29 E-value=1.1e+02 Score=23.95 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+. ..+|+|++........ ..++.+.+++ .
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~-g~~~~~~l~~------------------~ 72 (123)
T 1xhf_A 12 ELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN-GLLLARELRE------------------Q 72 (123)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSC-HHHHHHHHHH------------------H
T ss_pred CHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCC-HHHHHHHHHh------------------C
Confidence 445567788888888987521 111 3689999865443222 2233333322 1
Q ss_pred CCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 159 KHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 159 ~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
+..+|++ .+..........++ ....|++..+-....+...+..
T Consensus 73 -~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~ 116 (123)
T 1xhf_A 73 -ANVALMFLTGRDNEVDKILGLE-IGADDYITKPFNPRELTIRARN 116 (123)
T ss_dssp -CCCEEEEEESCCSHHHHHHHHH-HTCSEEEESSCCHHHHHHHHHH
T ss_pred -CCCcEEEEECCCChHHHHHHHh-cCcceEEeCCCCHHHHHHHHHH
Confidence 4455554 44332222233444 3456888887555555444443
No 135
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=44.93 E-value=1.1e+02 Score=24.04 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHCCCe-ec-cCC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYS-EV-INV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~-~~-~~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|.+.||. +. +.+ ...+|+|++........+ .++.+.+++. .
T Consensus 13 ~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g-~~l~~~l~~~----------------~ 75 (128)
T 1jbe_A 13 FSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDG-LELLKTIRAX----------------X 75 (128)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCH-HHHHHHHHC------------------
T ss_pred CHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCH-HHHHHHHHhh----------------c
Confidence 455567888889888983 21 122 136899999765433322 2334433321 1
Q ss_pred cCCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 158 SKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 158 ~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
..+..+|+ +.+..........++ ....|++..+-....+.+.++.
T Consensus 76 ~~~~~~ii~~s~~~~~~~~~~~~~-~ga~~~l~KP~~~~~l~~~i~~ 121 (128)
T 1jbe_A 76 AMSALPVLMVTAEAKKENIIAAAQ-AGASGYVVKPFTAATLEEKLNK 121 (128)
T ss_dssp CCTTCCEEEEESSCCHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHH
T ss_pred ccCCCcEEEEecCccHHHHHHHHH-hCcCceeecCCCHHHHHHHHHH
Confidence 12444444 444432222334443 4556888887655555555444
No 136
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=44.56 E-value=1.4e+02 Score=27.53 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEE
Q 041524 267 SIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRY 346 (524)
Q Consensus 267 ~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~ 346 (524)
+.++.++.+.+.|+..+.+.+.+-... +. ..+ ++++++.+... ..+-.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~------------~~------------------~~~-~~i~~i~~~~~-ipv~v 80 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFG------------TG------------------DNR-ALIAEVAQAMD-IKVEL 80 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHT------------SC------------------CCH-HHHHHHHHHCS-SEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhc------------CC------------------ChH-HHHHHHHHhcC-CcEEE
Confidence 556666777788999999886432111 11 135 77777766532 23322
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE------EcC
Q 041524 347 TSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI------CGF 420 (524)
Q Consensus 347 ~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI------~G~ 420 (524)
+-...+++.++.+.++ |+..+++|.++..+ .+.+.+.++.+.. .+.+..+.- -|.
T Consensus 81 ---~ggI~~~~~~~~~l~~--Gad~V~lg~~~l~~-----------p~~~~~~~~~~g~---~~~~~l~~~~g~v~~~g~ 141 (244)
T 1vzw_A 81 ---SGGIRDDDTLAAALAT--GCTRVNLGTAALET-----------PEWVAKVIAEHGD---KIAVGLDVRGTTLRGRGW 141 (244)
T ss_dssp ---ESSCCSHHHHHHHHHT--TCSEEEECHHHHHC-----------HHHHHHHHHHHGG---GEEEEEEEETTEECCSSS
T ss_pred ---ECCcCCHHHHHHHHHc--CCCEEEECchHhhC-----------HHHHHHHHHHcCC---cEEEEEEccCCEEEEcCc
Confidence 2222356667777778 99999999775321 2333444433321 234444432 122
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeee
Q 041524 421 CGETEEEHADTLTLMKAVGYDMAYMFAYS 449 (524)
Q Consensus 421 PgET~ed~~~tl~~l~~l~~d~~~i~~~s 449 (524)
-..+. +..+.+..+.+.+++.+.+....
T Consensus 142 ~~~~~-~~~e~~~~~~~~G~~~i~~~~~~ 169 (244)
T 1vzw_A 142 TRDGG-DLYETLDRLNKEGCARYVVTDIA 169 (244)
T ss_dssp CCCCC-BHHHHHHHHHHTTCCCEEEEEC-
T ss_pred ccCCC-CHHHHHHHHHhCCCCEEEEeccC
Confidence 11122 33444556667888877665443
No 137
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=44.13 E-value=1.1e+02 Score=27.91 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=58.4
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhh
Q 041524 76 QGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKR 145 (524)
Q Consensus 76 ~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~ 145 (524)
..+|.++-= +..-.+.+...|.+.||++.. .+. ..+|+|++.-...... ..++...+++
T Consensus 23 ~~~ILivdd----~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~-g~~~~~~lr~------ 91 (250)
T 3r0j_A 23 EARVLVVDD----EANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMD-GFGVLRRLRA------ 91 (250)
T ss_dssp SCEEEEECS----CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSC-HHHHHHHHHH------
T ss_pred CceEEEEEC----CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCC-HHHHHHHHHh------
Confidence 345655432 355577888899999997531 121 3689999976554332 2334444432
Q ss_pred hhhhcccccccccCCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 146 EWKKNVATGRSQSKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 146 ~~~~~~~~~~~~~~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
..++.+|++ .+..........++ ....||+..+-....+...++.+.
T Consensus 92 ------------~~~~~~ii~lt~~~~~~~~~~~~~-~Ga~~yl~Kp~~~~~L~~~i~~~~ 139 (250)
T 3r0j_A 92 ------------DGIDAPALFLTARDSLQDKIAGLT-LGGDDYVTKPFSLEEVVARLRVIL 139 (250)
T ss_dssp ------------TTCCCCEEEEECSTTHHHHHHHHT-STTCEEEESSCCHHHHHHHHHHHH
T ss_pred ------------cCCCCCEEEEECCCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHHH
Confidence 135555554 44332222233443 355688888866555555555543
No 138
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=43.64 E-value=72 Score=28.66 Aligned_cols=98 Identities=8% Similarity=0.007 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|...||++.. .+ ...+|+|++........ ..++...+++.
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~-g~~~~~~l~~~------------------ 76 (233)
T 1ys7_A 16 DSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLD-GVSVVTALRAM------------------ 76 (233)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSC-HHHHHHHHHHT------------------
T ss_pred CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCC-HHHHHHHHHhc------------------
Confidence 345567788888889997521 11 13689999976543322 23344444321
Q ss_pred CCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhc
Q 041524 159 KHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 159 ~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
.|+.+|+ +.+..........++ ....|++..+-....+...+..+..
T Consensus 77 ~~~~~ii~lt~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 77 DNDVPVCVLSARSSVDDRVAGLE-AGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp TCCCCEEEEECCCTTTCCCTTTT-TTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 2555555 444433222233333 3456888887666666666655543
No 139
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=43.38 E-value=38 Score=32.06 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEE----------------Ec
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFI----------------CG 419 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI----------------~G 419 (524)
++.++.++++ |+..|.+...... ..+.+...++.+.+++. |+.+.+... +|
T Consensus 24 ~~~l~~~~~~--G~~~vEl~~~~~~---------~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~g~~~~~~~~~~~~~~ 90 (290)
T 3tva_A 24 GVHLEVAQDL--KVPTVQVHAPHPH---------TRTREHAQAFRAKCDAA--GIQVTVIFGGFDGESYADIPTTARTVG 90 (290)
T ss_dssp SBCHHHHHHT--TCSEEEEECCCGG---------GCSHHHHHHHHHHHHHT--TCEEEEEECCCTTCCCSSHHHHHHHSS
T ss_pred HHHHHHHHHc--CCCEEEecCCCCC---------cCCHHHHHHHHHHHHHc--CCEEEEEeeccCCcccccccccccccC
Confidence 4688889988 9999888874321 24567777788888888 887765321 12
Q ss_pred CCC-C----CHHHHHHHHHHHHHcCCCeEEEE
Q 041524 420 FCG-E----TEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 420 ~Pg-E----T~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
++. + ..+.+++.++++.+++...+.+.
T Consensus 91 ~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~ 122 (290)
T 3tva_A 91 LVPLETRASRVAEMKEISDFASWVGCPAIGLH 122 (290)
T ss_dssp SCSTTTHHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 211 1 23667788888899998887664
No 140
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=43.24 E-value=2.2e+02 Score=26.95 Aligned_cols=102 Identities=10% Similarity=0.159 Sum_probs=55.2
Q ss_pred cCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCc
Q 041524 262 SRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPE 341 (524)
Q Consensus 262 sr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 341 (524)
..++++++++++ +.|+..+.++..+. + +.+ ...+.+++++ .|.
T Consensus 52 ~~~~e~~l~~~~---~~GV~~~V~v~~~~--~------------~~~----------------n~~~~~~~~~----~p~ 94 (294)
T 4i6k_A 52 EATVQSFISHLD---EHNFTHGVLVQPSF--L------------GTN----------------NQAMLNAIQQ----YPD 94 (294)
T ss_dssp CBCHHHHHHHHH---HTTCCEEEEECCGG--G------------TTC----------------CHHHHHHHHH----STT
T ss_pred CCCHHHHHHHHH---HcCCCeEEEecCcc--c------------ccc----------------hHHHHHHHHH----CCC
Confidence 346666666655 45999988886433 2 110 1224444433 333
Q ss_pred eEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEE
Q 041524 342 MRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGL 412 (524)
Q Consensus 342 ~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i 412 (524)
.-..+..++|.. +++.|+.+.+. |+..|-+-..... .+....+.+...++.+++. |+.+
T Consensus 95 r~~g~~~v~P~~-~~~eL~~l~~~--gv~Gi~l~~~~~~-------~~~~~~~~~~~~~~~a~~~--glpv 153 (294)
T 4i6k_A 95 RLKGIAVVQHTT-TFNELVNLKAQ--GIVGVRLNLFGLN-------LPALNTPDWQKFLRNVESL--NWQV 153 (294)
T ss_dssp TEEEEECCCTTC-CHHHHHHHHTT--TEEEEEEECTTSC-------CCCSSSHHHHHHHHHHHHT--TCEE
T ss_pred eEEEEEEeCCcc-cHHHHHHHHHC--CCcEEEeccCCCC-------CCCcccHHHHHHHHHHHHc--CCEE
Confidence 233344578854 56677778776 7776655433111 1123346666666666666 6544
No 141
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=42.85 E-value=2.6e+02 Score=29.65 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC-ce
Q 041524 264 PVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP-EM 342 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~ 342 (524)
+++.+++-++.+.+.|+..|.|.|-. +.- . +..+.++++.+.+..+ ..
T Consensus 173 ~~e~~~~~a~~l~~~Gad~I~L~DT~-G~~-------------~-----------------P~~v~~lv~~l~~~~p~~i 221 (539)
T 1rqb_A 173 TVEGYVKLAGQLLDMGADSIALKDMA-ALL-------------K-----------------PQPAYDIIKAIKDTYGQKT 221 (539)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETT-CCC-------------C-----------------HHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC-CCc-------------C-----------------HHHHHHHHHHHHHhcCCCc
Confidence 78999999999999999999888732 211 1 3467888888877654 45
Q ss_pred EEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCC
Q 041524 343 RFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFC 421 (524)
Q Consensus 343 ~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~P 421 (524)
.+.+.+-+-..+ ....+..+. + |+.+|.-.+- -|+.+..--....++..++.. |+. +
T Consensus 222 ~I~~H~Hnd~GlAvAN~laAve-A--Ga~~VD~ti~--------g~GertGN~~lE~lv~~L~~~--g~~---------t 279 (539)
T 1rqb_A 222 QINLHCHSTTGVTEVSLMKAIE-A--GVDVVDTAIS--------SMSLGPGHNPTESVAEMLEGT--GYT---------T 279 (539)
T ss_dssp CEEEEEBCTTSCHHHHHHHHHH-T--TCSEEEEBCG--------GGCSTTSBCBHHHHHHHTTTS--SEE---------C
T ss_pred eEEEEeCCCCChHHHHHHHHHH-h--CCCEEEEecc--------ccCCCccChhHHHHHHHHHhc--CCC---------c
Confidence 555543111111 234444553 4 9999987775 344443333334444444433 432 2
Q ss_pred CCCHHHHHHHHHHHHHc
Q 041524 422 GETEEEHADTLTLMKAV 438 (524)
Q Consensus 422 gET~ed~~~tl~~l~~l 438 (524)
|-..+.+.++.+++.++
T Consensus 280 gidl~~L~~is~~v~~~ 296 (539)
T 1rqb_A 280 NLDYDRLHKIRDHFKAI 296 (539)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45778888887777765
No 142
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=42.81 E-value=1.5e+02 Score=26.46 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHH-CCCeecc--CC----------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 90 VNDMEIVLSIMKN-AGYSEVI--NV----------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 90 ~~d~e~i~~~L~~-~Gy~~~~--~~----------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
..-.+.+...|.+ .||+++. .+ ...+|+|++.-..... ...++...+++.
T Consensus 17 ~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~-~G~~~~~~lr~~---------------- 79 (225)
T 3klo_A 17 CMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISD-DVLTDYSSFKHI---------------- 79 (225)
T ss_dssp SHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCH-HHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCC-CHHHHHHHHHHh----------------
Confidence 3446677778874 6886521 11 1358999996554332 233344443320
Q ss_pred ccCCCCEEEEEccccccc-HHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 157 QSKHPPKIVVLGCMAERL-KDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 157 ~~~p~~~IvvgG~~at~~-~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
..|+.+|++...+.... ....++ ....||+.-+.....+...+..+..|.
T Consensus 80 -~~~~~~ii~lt~~~~~~~~~~~~~-~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 80 -SCPDAKEVIINCPQDIEHKLLFKW-NNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp -HCTTCEEEEEEECTTCCHHHHTTS-TTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred -hCCCCcEEEEECCcchhHHHHHHH-hCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 14666666544344332 233332 345678888876666666666665554
No 143
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=42.12 E-value=89 Score=31.70 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=58.2
Q ss_pred CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEe--------EEEcCCCC--
Q 041524 354 FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSD--------FICGFCGE-- 423 (524)
Q Consensus 354 ~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~--------fI~G~PgE-- 423 (524)
.+++.|+.++++| |+..|.+++.... .+-..+.+++.++-+.+.++ |+.+.+- +..| +.+
T Consensus 31 ~d~~~L~~i~q~~-G~~gIe~~l~~~~------~g~~w~~~~i~~lk~~l~~~--GL~i~~i~s~~~~~~i~~~-~~~r~ 100 (386)
T 3bdk_A 31 KDPVTLEEIKAIP-GMQGIVTAVYDVP------VGQAWPLENILELKKMVEEA--GLEITVIESIPVHEDIKQG-KPNRD 100 (386)
T ss_dssp TCSSCHHHHHTST-TCCEEEECCCSSC------SSSCCCHHHHHHHHHHHHTT--TCEEEEEECCCCCHHHHTT-CTTHH
T ss_pred CCHHHHHHHHhcC-CCCEEEeCCcccC------CCCCCCHHHHHHHHHHHHHc--CCEEEEEeccccccccccC-cHHHH
Confidence 3566889999876 8999998864222 12245778888888889998 9877542 2222 111
Q ss_pred -CHHHHHHHHHHHHHcCCCeEEEEeeec
Q 041524 424 -TEEEHADTLTLMKAVGYDMAYMFAYSM 450 (524)
Q Consensus 424 -T~ed~~~tl~~l~~l~~d~~~i~~~sp 450 (524)
..+.++++++++.+++...+. +.|.|
T Consensus 101 ~~ie~~k~~i~~aa~lGi~~v~-~nf~p 127 (386)
T 3bdk_A 101 ALIENYKTSIRNVGAAGIPVVC-YNFMP 127 (386)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEE-ECCCS
T ss_pred HHHHHHHHHHHHHHHcCCCEEE-EcCcc
Confidence 236777889999999998763 35554
No 144
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=41.77 E-value=1.3e+02 Score=24.82 Aligned_cols=96 Identities=7% Similarity=0.058 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCC-cEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENA-EVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~a-Dvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|.. ||++.. .+. ..+ |+|++....... ...++.+.+++.
T Consensus 13 ~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~-~g~~~~~~l~~~----------------- 73 (151)
T 3kcn_A 13 DYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGM-EGTEVIQKARLI----------------- 73 (151)
T ss_dssp CHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSS-CHHHHHHHHHHH-----------------
T ss_pred CHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCC-cHHHHHHHHHhc-----------------
Confidence 34445666677754 887531 111 244 999997654332 233344444321
Q ss_pred cCCCCEEEEEcccccc-cHHHHHhhCC-cceEEECCCCcccHHHHHHHHh
Q 041524 158 SKHPPKIVVLGCMAER-LKDKILDADK-MVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~-~~e~~l~~~~-~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
.|..+|++....... ...+.++. . ..|++..+-....+...+..+.
T Consensus 74 -~~~~~ii~~s~~~~~~~~~~~~~~-g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 74 -SPNSVYLMLTGNQDLTTAMEAVNE-GQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp -CSSCEEEEEECGGGHHHHHHHHHH-TCCSEEEESSCCHHHHHHHHHHHH
T ss_pred -CCCcEEEEEECCCCHHHHHHHHHc-CCeeEEEcCCCCHHHHHHHHHHHH
Confidence 366666654433332 22334433 3 4588888866666666665544
No 145
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=41.58 E-value=1.5e+02 Score=25.76 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC-----CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCC
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV-----PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPP 162 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~-----~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 162 (524)
|....+.+...|...||+++. .+ ...+|+|++........ .. +...++. . .++.
T Consensus 21 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~dlvl~D~~mp~~~-g~-l~~~~~~-----------------~-~~~~ 80 (196)
T 1qo0_D 21 PGEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVVFTSIFQNRHH-DE-IAALLAA-----------------G-TPRT 80 (196)
T ss_dssp TTHHHHHHHHHHHHHTCEEEEECSCCSSCSSCCSEEEEECCSSTHH-HH-HHHHHHH-----------------S-CTTC
T ss_pred ChhHHHHHHHHHHHcCCeEEEecCchhhCCCCCCEEEEeCCCCccc-hH-HHHHHhc-----------------c-CCCC
Confidence 345577888889888997532 11 13579999865442221 11 2222221 1 1555
Q ss_pred EEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 163 KIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 163 ~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
+|| +.|..........++ ....||+..+-....+...+..+
T Consensus 81 ~ii~lt~~~~~~~~~~a~~-~ga~~~l~KP~~~~~L~~~l~~~ 122 (196)
T 1qo0_D 81 TLVALVEYESPAVLSQIIE-LECHGVITQPLDAHRVLPVLVSA 122 (196)
T ss_dssp EEEEEECCCSHHHHHHHHH-HTCSEEEESSCCGGGHHHHHHHH
T ss_pred CEEEEEcCCChHHHHHHHH-cCCCeeEecCcCHHHHHHHHHHH
Confidence 555 445433223334444 35568999987777776666654
No 146
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=41.27 E-value=78 Score=24.64 Aligned_cols=95 Identities=12% Similarity=0.068 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+. ..+|+|++........+ . +.++++ + .
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g-~---~~~~~l---~-------------~ 69 (121)
T 1zh2_A 10 EQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG-I---EFIRDL---R-------------Q 69 (121)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEH-H---HHHHHH---H-------------T
T ss_pred CHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcH-H---HHHHHH---H-------------h
Confidence 344566777888888887521 111 36899998755433222 2 333333 0 1
Q ss_pred CCCCEE-EEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 159 KHPPKI-VVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 159 ~p~~~I-vvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.+..+| ++.+..........++ ....|++..+-....+...+..+
T Consensus 70 ~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~Kp~~~~~l~~~i~~~ 115 (121)
T 1zh2_A 70 WSAVPVIVLSARSEESDKIAALD-AGADDYLSKPFGIGELQARLRVA 115 (121)
T ss_dssp TCCCCEEEEESCCSHHHHHHHHH-HTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCHHHHHHHHh-cCCCeEEeCCcCHHHHHHHHHHH
Confidence 234444 4555433222334444 34568888886655555555443
No 147
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=41.08 E-value=1e+02 Score=24.91 Aligned_cols=98 Identities=9% Similarity=0.075 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHCCC--eec-cCC---------C----------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhh
Q 041524 89 NVNDMEIVLSIMKNAGY--SEV-INV---------P----------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKRE 146 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy--~~~-~~~---------~----------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~ 146 (524)
|....+.+...|.+.|| .+. +.+ . ..+|+|++........ ..++.+.+++.
T Consensus 15 ~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~-g~~~~~~l~~~------ 87 (149)
T 1k66_A 15 SDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTD-GREVLQEIKQD------ 87 (149)
T ss_dssp CHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSC-HHHHHHHHTTS------
T ss_pred CHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCC-HHHHHHHHHhC------
Confidence 45567778888888888 331 111 1 4689999975443222 22333333211
Q ss_pred hhhcccccccccCCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 147 WKKNVATGRSQSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 147 ~~~~~~~~~~~~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
...+..+|+ +.+..........++ ....|++..+-....|.+.++.+
T Consensus 88 ----------~~~~~~~ii~~t~~~~~~~~~~~~~-~g~~~~l~kP~~~~~l~~~i~~~ 135 (149)
T 1k66_A 88 ----------EVLKKIPVVIMTTSSNPKDIEICYS-YSISSYIVKPLEIDRLTETVQTF 135 (149)
T ss_dssp ----------TTGGGSCEEEEESCCCHHHHHHHHH-TTCSEEEECCSSHHHHHHHHHHH
T ss_pred ----------cccCCCeEEEEeCCCCHHHHHHHHH-CCCCEEEeCCCCHHHHHHHHHHH
Confidence 111344444 455433222334443 45568888876666666555554
No 148
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=40.99 E-value=57 Score=28.38 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|.+.||++.. .+ ...+|+|++.-...... ..++...+++.
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~-g~~~~~~l~~~------------------ 76 (184)
T 3rqi_A 16 NEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDS-GLSLIAPLCDL------------------ 76 (184)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEE-SHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCcc-HHHHHHHHHhc------------------
Confidence 456678888899999997521 11 14689999965443322 22344444321
Q ss_pred CCCCEEEE-EcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 159 KHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 159 ~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.|+.+|++ .|........+.++ ....||+..+-. ..+|+..+
T Consensus 77 ~~~~~ii~lt~~~~~~~~~~a~~-~Ga~~~l~KP~~---~~~L~~~i 119 (184)
T 3rqi_A 77 QPDARILVLTGYASIATAVQAVK-DGADNYLAKPAN---VESILAAL 119 (184)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHH-HTCSEEEESSCC---HHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHH-hCHHHheeCCCC---HHHHHHHH
Confidence 35566554 44432222334444 345688888744 44555443
No 149
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=40.42 E-value=1.3e+02 Score=27.72 Aligned_cols=99 Identities=10% Similarity=0.065 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+..-.+.+...|.+.||.+.. .+ ...+|+|++...... ..-++.++++ + +
T Consensus 46 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~----~~G~~l~~~l---r------------~- 105 (249)
T 3q9s_A 46 DHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPD----FDGGDVVQRL---R------------K- 105 (249)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCH----HHHHHHHHHH---H------------T-
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCC----CCHHHHHHHH---H------------c-
Confidence 455567888899999996521 12 146899999654322 2234444444 1 1
Q ss_pred CCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 159 KHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 159 ~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
.|+.+|+ +.+........+.++ ....||+..+-....|...+..+..+.
T Consensus 106 ~~~~~iI~lt~~~~~~~~~~a~~-~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 106 NSALPIIVLTARDTVEEKVRLLG-LGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp TCCCCEEEEESCCSHHHHHHHHH-HTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCCCCEEEEECCCCHHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 2455555 444332223334444 355689998876666666666655543
No 150
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=39.67 E-value=1.3e+02 Score=23.78 Aligned_cols=97 Identities=10% Similarity=0.134 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHCCC-eec-cCC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGY-SEV-INV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy-~~~-~~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|.+.|| .+. +.+ ...+|+|++........+ . +.++++ + ...
T Consensus 15 ~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g-~---~~~~~l---~----------~~~ 77 (129)
T 1p6q_A 15 QVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDG-L---GLLQAV---R----------ANP 77 (129)
T ss_dssp SHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCH-H---HHHHHH---T----------TCT
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCH-H---HHHHHH---h----------cCc
Confidence 34556778888888898 331 111 136899998655433222 2 333333 1 001
Q ss_pred cCCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 158 SKHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
..+..+|++...+.+. .....++ ....|++..+-....+...++.
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~ 123 (129)
T 1p6q_A 78 ATKKAAFIILTAQGDRALVQKAAA-LGANNVLAKPFTIEKMKAAIEA 123 (129)
T ss_dssp TSTTCEEEECCSCCCHHHHHHHHH-HTCSCEECCCSSHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHH-cCCCEEEECCCCHHHHHHHHHH
Confidence 1356666665433332 2233443 3456788777555555554444
No 151
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=39.62 E-value=2.3e+02 Score=26.18 Aligned_cols=80 Identities=6% Similarity=-0.027 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc----CCCCC-------
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG----FCGET------- 424 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G----~PgET------- 424 (524)
++.++.+++. |+..|.+....... ...+...++.+.+++. |+.+.+..-++ +.+..
T Consensus 20 ~~~l~~~~~~--G~~~vEl~~~~~~~---------~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~~l~~~d~~~r~~~ 86 (290)
T 2qul_A 20 PATAKRIAGL--GFDLMEISLGEFHN---------LSDAKKRELKAVADDL--GLTVMCCIGLKSEYDFASPDKSVRDAG 86 (290)
T ss_dssp HHHHHHHHHT--TCSEEEEESTTGGG---------SCHHHHHHHHHHHHHH--TCEEEEEEEECGGGCTTCSCHHHHHHH
T ss_pred HHHHHHHHHh--CCCEEEEecCCccc---------cchhhHHHHHHHHHHc--CCceEEecCCCCCCCCCCCCHHHHHHH
Confidence 6788999998 99999987654211 1225666777788888 99887632111 21222
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEee
Q 041524 425 EEEHADTLTLMKAVGYDMAYMFAY 448 (524)
Q Consensus 425 ~ed~~~tl~~l~~l~~d~~~i~~~ 448 (524)
.+.+++.++++.+++...+.+..+
T Consensus 87 ~~~~~~~i~~a~~lG~~~v~~~~~ 110 (290)
T 2qul_A 87 TEYVKRLLDDCHLLGAPVFAGLTF 110 (290)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeecc
Confidence 267888999999999998875433
No 152
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=39.17 E-value=2e+02 Score=27.72 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=52.0
Q ss_pred HHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcE---EEEeEEEcCCC------CC---
Q 041524 357 ELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG---LSSDFICGFCG------ET--- 424 (524)
Q Consensus 357 elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~---i~~~fI~G~Pg------ET--- 424 (524)
+.++.++++ |+..|.++......... ..+.++..++-+.+.+. |+. +.+ +.++|. .+
T Consensus 35 ~~l~~~~~~--G~~~vEl~~~~~~~~~~-----~~~~~~~~~l~~~l~~~--gL~~~~i~~--~~~~~~~~~l~~~d~~~ 103 (335)
T 2qw5_A 35 AHIKKLQRF--GYSGFEFPIAPGLPENY-----AQDLENYTNLRHYLDSE--GLENVKIST--NVGATRTFDPSSNYPEQ 103 (335)
T ss_dssp HHHHHHHHT--TCCEEEEECCCCCGGGH-----HHHHHHHHHHHHHHHHT--TCTTCEEEE--ECCCCSSSCTTCSSHHH
T ss_pred HHHHHHHHh--CCCEEEEecCCCccccc-----ccchHHHHHHHHHHHHC--CCCcceeEE--EeccCCCCCCCCCCHHH
Confidence 799999999 99999998764432110 01225566667777888 888 766 344442 12
Q ss_pred ----HHHHHHHHHHHHHcCCCeE
Q 041524 425 ----EEEHADTLTLMKAVGYDMA 443 (524)
Q Consensus 425 ----~ed~~~tl~~l~~l~~d~~ 443 (524)
.+.+++.++++.+++...+
T Consensus 104 r~~~~~~~~~~i~~A~~lG~~~v 126 (335)
T 2qw5_A 104 RQEALEYLKSRVDITAALGGEIM 126 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEE
Confidence 2677888999999999987
No 153
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=39.09 E-value=3.5e+02 Score=28.03 Aligned_cols=121 Identities=13% Similarity=0.146 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceE
Q 041524 264 PVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMR 343 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 343 (524)
+++.+++-++.+.+.|+..|.|.|-+ +.- . +..+.++++.+.+.. ...
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I~l~DT~-G~~-------------~-----------------P~~v~~lv~~l~~~~-~~~ 203 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSIALKDMA-GIL-------------T-----------------PYAAEELVSTLKKQV-DVE 203 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETT-SCC-------------C-----------------HHHHHHHHHHHHHHC-CSC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCC-CCc-------------C-----------------HHHHHHHHHHHHHhc-CCe
Confidence 78999999999999999999988732 211 1 356788888887764 344
Q ss_pred EEEecCC-CCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCC
Q 041524 344 FRYTSPH-PKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCG 422 (524)
Q Consensus 344 ir~~s~~-p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~Pg 422 (524)
+.+.+-+ ...-....+..+. + |+.+|+-.+-. |+.+..--....++..++.. |+. +|
T Consensus 204 i~~H~Hnd~GlAvAN~laAv~-A--Ga~~VD~ti~g--------~gertGN~~lE~lv~~L~~~--g~~---------tg 261 (464)
T 2nx9_A 204 LHLHCHSTAGLADMTLLKAIE-A--GVDRVDTAISS--------MSGTYGHPATESLVATLQGT--GYD---------TG 261 (464)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T--TCSEEEEBCGG--------GCSTTSCCBHHHHHHHHTTS--TTC---------CC
T ss_pred EEEEECCCCChHHHHHHHHHH-h--CCCEEEEeccc--------cCCCCcCHHHHHHHHHHHhc--CCC---------cc
Confidence 5554211 1111234555553 4 99999877663 43333222233333333333 432 34
Q ss_pred CCHHHHHHHHHHHHHc
Q 041524 423 ETEEEHADTLTLMKAV 438 (524)
Q Consensus 423 ET~ed~~~tl~~l~~l 438 (524)
-..+.+.++-+++.++
T Consensus 262 idl~~L~~is~~v~~~ 277 (464)
T 2nx9_A 262 LDIAKLEQIAAYFRDV 277 (464)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 4667777777766654
No 154
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=38.14 E-value=32 Score=34.19 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
.+.+++|+++ |++.|-+++ -.+|. .-..+.+.++++++.++++ |+.+..||=.
T Consensus 30 ~d~~~ilk~~--G~N~VRi~~-w~~P~-----~g~~~~~~~~~~~~~A~~~--GlkV~ld~Hy 82 (332)
T 1hjs_A 30 QPLENILAAN--GVNTVRQRV-WVNPA-----DGNYNLDYNIAIAKRAKAA--GLGVYIDFHY 82 (332)
T ss_dssp CCHHHHHHHT--TCCEEEEEE-CSSCT-----TCTTSHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred ccHHHHHHHC--CCCEEEEee-eeCCC-----CCcCCHHHHHHHHHHHHHC--CCEEEEEecc
Confidence 4678999998 999999987 34443 2235889999999999999 9999888743
No 155
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=37.98 E-value=1.3e+02 Score=27.16 Aligned_cols=98 Identities=9% Similarity=0.046 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHCCCeec-cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEV-INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~-~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+..-.+.+...|.+.||++. +.+. ..+|+|++........ ..++...+++
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~-g~~~~~~lr~------------------- 73 (238)
T 2gwr_A 14 DASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMN-GIDVCRVLRA------------------- 73 (238)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSC-HHHHHHHHHT-------------------
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCC-HHHHHHHHHh-------------------
Confidence 34556778888999999752 2222 2689999976543322 2233333321
Q ss_pred CCCCE-EEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 159 KHPPK-IVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 159 ~p~~~-IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
.++.+ |++.+..........++ ....|++..+-....+...+..+..+
T Consensus 74 ~~~~~ii~lt~~~~~~~~~~~~~-~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 74 DSGVPIVMLTAKTDTVDVVLGLE-SGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp TCCCCEEEEEETTCCSCHHHHHH-TTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred CCCCcEEEEeCCCCHHHHHHHHH-CCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 12344 44555443334445554 45678888886666666666555444
No 156
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=37.63 E-value=1.6e+02 Score=28.48 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=50.9
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
--..+++|+++.....+.|..-+.+.--+- . |++. .....+.++++.|.+..+
T Consensus 29 lPvTpeEia~~A~~a~~AGAaivHlHvRd~--~------------G~ps-------------~d~~~~~e~~~~IR~~~p 81 (282)
T 2y7e_A 29 LPITPEEQAKEAKACFEAGARVIHLHIRED--D------------GRPS-------------QRLDRFQEAISAIREVVP 81 (282)
T ss_dssp CCCSHHHHHHHHHHHHHHTEEEEEECEECT--T------------SCEE-------------CCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCC--C------------CCcC-------------CCHHHHHHHHHHHHHHCC
Confidence 346799999999999999998888765441 1 3221 123568999999998777
Q ss_pred ceEEEEecC-CCCCCCHHHHHHH
Q 041524 341 EMRFRYTSP-HPKDFPDELLYIM 362 (524)
Q Consensus 341 ~~~ir~~s~-~p~~~~~elL~~l 362 (524)
.+-+.+++. .+..-.++.+..+
T Consensus 82 d~ii~~TTg~~~~~~~eeR~~~~ 104 (282)
T 2y7e_A 82 EIIIQISTGGAVGESFDKRLAPL 104 (282)
T ss_dssp TSEEEECSSCSTTCCHHHHHGGG
T ss_pred CeEEEeCCCCCCCCCHHHHHHHh
Confidence 888888762 2221234555555
No 157
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=37.38 E-value=2.2e+02 Score=26.52 Aligned_cols=143 Identities=10% Similarity=0.014 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
...+...++|+.+.+.|+..|+|---+ .. |. . ......+|++... .+
T Consensus 73 ~E~~~M~~Di~~~~~~GadGvV~G~Lt--~d------------g~-i--------------D~~~~~~Li~~a~----~~ 119 (224)
T 2bdq_A 73 LELRIMEEDILRAVELESDALVLGILT--SN------------NH-I--------------DTEAIEQLLPATQ----GL 119 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECCBC--TT------------SS-B--------------CHHHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeEC--CC------------CC-c--------------CHHHHHHHHHHhC----CC
Confidence 357788889999999999998874321 11 21 0 0133555554432 34
Q ss_pred EEEEec-CC--CCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHH-hCCCcEEEEeEEE
Q 041524 343 RFRYTS-PH--PKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQ-IIPDVGLSSDFIC 418 (524)
Q Consensus 343 ~ir~~s-~~--p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~-~~pgi~i~~~fI~ 418 (524)
.+.|.- .. +..-..+.++.+.+. ||.+|--.=+..+ .+.++-++.++.+.+ +.+.+ .+|.
T Consensus 120 ~vTFHRAFD~~~~~d~~~ale~L~~l--Gv~rILTSG~~~~----------~~a~~g~~~L~~Lv~~a~~ri----~Im~ 183 (224)
T 2bdq_A 120 PLVFHMAFDVIPKSDQKKSIDQLVAL--GFTRILLHGSSNG----------EPIIENIKHIKALVEYANNRI----EIMV 183 (224)
T ss_dssp CEEECGGGGGSCTTTHHHHHHHHHHT--TCCEEEECSCSSC----------CCGGGGHHHHHHHHHHHTTSS----EEEE
T ss_pred eEEEECchhccCCcCHHHHHHHHHHc--CCCEEECCCCCCC----------CcHHHHHHHHHHHHHhhCCCe----EEEe
Confidence 555532 11 111235678889998 9998763222111 123333333333332 22234 4677
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCChhcc
Q 041524 419 GFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 419 G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
|= |=+.+.+.+ ++.+.++..++.....-.+|.|+.+
T Consensus 184 Gg-GV~~~Ni~~---l~~~tGv~e~H~s~i~~~~~~~~~~ 219 (224)
T 2bdq_A 184 GG-GVTAENYQY---ICQETGVKQAHGTRITQMAGDPLEH 219 (224)
T ss_dssp CS-SCCTTTHHH---HHHHHTCCEEEETTCC---------
T ss_pred CC-CCCHHHHHH---HHHhhCCCEEccccccCCCCCcchh
Confidence 63 667666654 3556789999988888889998864
No 158
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=37.34 E-value=1.2e+02 Score=26.65 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHCCCeec--cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEV--INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~--~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
|....+.+...|...||+++ +.+. ..+|+|++........ ..++...++..
T Consensus 22 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~-g~~~~~~l~~~----------------- 83 (205)
T 1s8n_A 22 EALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRD-GIDAASEIASK----------------- 83 (205)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSC-HHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCC-hHHHHHHHHhc-----------------
Confidence 45667788889999999853 2221 3689999976543332 23344444321
Q ss_pred cCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 158 SKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.+...|++.|..........++ ....||+..+-....+...+..+
T Consensus 84 -~~~pii~lt~~~~~~~~~~~~~-~ga~~~l~KP~~~~~L~~~i~~~ 128 (205)
T 1s8n_A 84 -RIAPIVVLTAFSQRDLVERARD-AGAMAYLVKPFSISDLIPAIELA 128 (205)
T ss_dssp -TCSCEEEEEEGGGHHHHHTTGG-GSCEEEEEESCCHHHHHHHHHHH
T ss_pred -CCCCEEEEecCCCHHHHHHHHh-cCCcEEEeCCCCHHHHHHHHHHH
Confidence 2334556666433222233333 34567888876555555555443
No 159
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=37.28 E-value=1.4e+02 Score=27.43 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEE
Q 041524 267 SIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRY 346 (524)
Q Consensus 267 ~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~ 346 (524)
+.++.++.+.+.|+..|.+.+.+-... + ...+ ++++++.+... ..+-.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~------------~------------------~~~~-~~i~~i~~~~~-ipv~v 79 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFG------------R------------------GSNH-ELLAEVVGKLD-VQVEL 79 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTT------------S------------------CCCH-HHHHHHHHHCS-SEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEEcCccccc------------C------------------CChH-HHHHHHHHhcC-CcEEE
Confidence 556666677788999999886432111 1 1124 77777766532 23322
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE--------
Q 041524 347 TSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC-------- 418 (524)
Q Consensus 347 ~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~-------- 418 (524)
+-...+++.++.+.++ |+..+++|.++..+ .+.+.+.++.+.. .+.+..+.-+
T Consensus 80 ---~ggi~~~~~~~~~l~~--Gad~V~lg~~~l~~-----------p~~~~~~~~~~g~---~~~~~ld~~~~~~~~~v~ 140 (244)
T 2y88_A 80 ---SGGIRDDESLAAALAT--GCARVNVGTAALEN-----------PQWCARVIGEHGD---QVAVGLDVQIIDGEHRLR 140 (244)
T ss_dssp ---ESSCCSHHHHHHHHHT--TCSEEEECHHHHHC-----------HHHHHHHHHHHGG---GEEEEEEEEEETTEEEEE
T ss_pred ---ECCCCCHHHHHHHHHc--CCCEEEECchHhhC-----------hHHHHHHHHHcCC---CEEEEEeccccCCCCEEE
Confidence 2222356678888788 99999999775321 2334444443322 2334444321
Q ss_pred --cCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Q 041524 419 --GFCGETEEEHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 419 --G~PgET~ed~~~tl~~l~~l~~d~~~i~~ 447 (524)
|...++. +..+.++.+.+.+++.+.+..
T Consensus 141 ~~g~~~~~~-~~~e~~~~~~~~G~~~i~~~~ 170 (244)
T 2y88_A 141 GRGWETDGG-DLWDVLERLDSEGCSRFVVTD 170 (244)
T ss_dssp EGGGTEEEE-EHHHHHHHHHHTTCCCEEEEE
T ss_pred ECCccCCCC-CHHHHHHHHHhCCCCEEEEEe
Confidence 3221122 444555667777888776554
No 160
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=36.98 E-value=2.9e+02 Score=26.50 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=86.6
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.--..+++|+++.....+.|..-+.+.--+-. |++. .....+.++++.|.+..
T Consensus 24 ~lPvTpeEia~~A~~~~~AGAaivHlHvRd~~--------------G~~s-------------~d~~~~~e~~~~IR~~~ 76 (275)
T 3no5_A 24 AVPITVSEQVESTQAAFEAGATLVHLHVRNDD--------------ETPT-------------SNPDRFALVLEGIRKHA 76 (275)
T ss_dssp TSCCSHHHHHHHHHHHHHHTCCEEEECEECTT--------------SCEE-------------CCHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHccCcEEEEeecCCC--------------CCcC-------------CCHHHHHHHHHHHHHhC
Confidence 34577999999999999999988887643321 2211 11356899999998877
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHc-CCCCcceeecCcC-----------CcCHHHHhhhCC-C-------CCHHHHHHH
Q 041524 340 PEMRFRYTSPHPKDFPDELLYIMRD-RPNVCKYIHLPAQ-----------TGNSAVLERMRR-G-------YTREAYLDL 399 (524)
Q Consensus 340 ~~~~ir~~s~~p~~~~~elL~~l~~-~~~G~~~i~igiE-----------Sgs~~vL~~m~R-~-------~t~e~~~~~ 399 (524)
|.+-+.+++--.....++. ..+.+ .|. .-.+.+|-. ..-.+.++.|.. | |+...+..+
T Consensus 77 pd~ii~~Ttg~~~~~~e~R-~~~~~~~Pe-~aSl~~gs~Nf~~~v~~N~~~~~~~~~~~~~e~Gi~pE~e~fd~g~l~~~ 154 (275)
T 3no5_A 77 PGMITQVSTGGRSGAGNER-GAMLSLRPD-MASLATGSVNFPTRVYDNPPELVDWLAAEMKTYGIKPEVEAFDLSMIFQA 154 (275)
T ss_dssp TTCEEEECCCCCTTCCGGG-GTTGGGCCS-EEEEECSCEECSSSEECCCHHHHHHHHHHHHHTTCEEEEEESSTHHHHHH
T ss_pred CCeEEEeCCCCCCCCHHHH-hhHhhcCCC-EEEecCcccccccccccCCHHHHHHHHHHHHHcCCeeEEEEEcHHHHHHH
Confidence 7777777752111113333 22222 221 222333311 112223344432 3 456666666
Q ss_pred HHHHHHhC-CCcEEEEeEEEcCCCC---CHHHHHHHHHHHHHcCCC
Q 041524 400 VQKIRQII-PDVGLSSDFICGFCGE---TEEEHADTLTLMKAVGYD 441 (524)
Q Consensus 400 v~~ir~~~-pgi~i~~~fI~G~PgE---T~ed~~~tl~~l~~l~~d 441 (524)
...+++-. ++ .+...|++|.+|- |.+++...++.+.++..+
T Consensus 155 ~~l~~~Gl~~~-p~~~~~vlGv~~g~~~~~~~l~~~~~~l~~~~~~ 199 (275)
T 3no5_A 155 AAMQAAGAIVG-PLHIQFVMGIKNAMPVDREVLEFYVQTLKRLSPD 199 (275)
T ss_dssp HHHHHHTSSCS-SCEEEEEECCTTSCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCCCC-CeeEEEEeCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 66555532 22 4667888888764 677777777777655544
No 161
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=36.93 E-value=1.6e+02 Score=23.57 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHCCC--eec-cCC---------C-----CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcc
Q 041524 89 NVNDMEIVLSIMKNAGY--SEV-INV---------P-----ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNV 151 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy--~~~-~~~---------~-----~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~ 151 (524)
|....+.+...|.+.|| .+. +.+ . ..+|+|++....... ...++.+.+++. .
T Consensus 18 ~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~-~g~~~~~~l~~~---~------- 86 (146)
T 3ilh_A 18 DDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGI-NGWELIDLFKQH---F------- 86 (146)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSS-CHHHHHHHHHHH---C-------
T ss_pred CHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCC-CHHHHHHHHHHh---h-------
Confidence 34456677778888887 431 111 1 458999997654433 233344444431 0
Q ss_pred cccccccCCCCEEEEEcccccc-cHHHHHhhCC-cceEEECCCCcccHHHHHHHHhcC
Q 041524 152 ATGRSQSKHPPKIVVLGCMAER-LKDKILDADK-MVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 152 ~~~~~~~~p~~~IvvgG~~at~-~~e~~l~~~~-~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
....+..+|++....... .....+. .. ..|++..+-....|.+.+.....+
T Consensus 87 ----~~~~~~~~ii~~t~~~~~~~~~~~~~-~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 87 ----QPMKNKSIVCLLSSSLDPRDQAKAEA-SDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp ----GGGTTTCEEEEECSSCCHHHHHHHHH-CSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred ----hhccCCCeEEEEeCCCChHHHHHHHh-cCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 002356666655443332 2233333 34 456888887766666666665544
No 162
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=36.64 E-value=1.5e+02 Score=27.35 Aligned_cols=80 Identities=9% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEE-eEEEcCCC---CCHHHHHHH
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSS-DFICGFCG---ETEEEHADT 431 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~-~fI~G~Pg---ET~ed~~~t 431 (524)
++.++.++++ |+..|.+....... ...+.+...++-+.+++. |+.+.+ .....+.. +..+.+++.
T Consensus 22 ~~~l~~~~~~--G~~~vEl~~~~~~~-------~~~~~~~~~~~~~~~~~~--gl~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T 2q02_A 22 EAFFRLVKRL--EFNKVELRNDMPSG-------SVTDDLNYNQVRNLAEKY--GLEIVTINAVYPFNQLTEEVVKKTEGL 90 (272)
T ss_dssp HHHHHHHHHT--TCCEEEEETTSTTS-------STTTTCCHHHHHHHHHHT--TCEEEEEEEETTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCEEEeecccccc-------ccccccCHHHHHHHHHHc--CCeEEechhhhccCCcHHHHHHHHHHH
Confidence 6677888887 88887776532210 000112334444555666 776632 22222211 123566777
Q ss_pred HHHHHHcCCCeEEEE
Q 041524 432 LTLMKAVGYDMAYMF 446 (524)
Q Consensus 432 l~~l~~l~~d~~~i~ 446 (524)
++++.+++...+.+.
T Consensus 91 i~~a~~lG~~~v~~~ 105 (272)
T 2q02_A 91 LRDAQGVGARALVLC 105 (272)
T ss_dssp HHHHHHHTCSEEEEC
T ss_pred HHHHHHhCCCEEEEc
Confidence 788888888776653
No 163
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=34.83 E-value=1.7e+02 Score=23.37 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCC--eec-cCC---------------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhc
Q 041524 89 NVNDMEIVLSIMKNAGY--SEV-INV---------------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKN 150 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy--~~~-~~~---------------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~ 150 (524)
|....+.+...|.+.|| .+. +.+ ...+|+|++........ . ++.++++ ++
T Consensus 16 ~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~-g---~~~~~~l---~~----- 83 (143)
T 2qvg_A 16 DEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMN-G---IEFLKEL---RD----- 83 (143)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSC-H---HHHHHHH---TT-----
T ss_pred CHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCC-H---HHHHHHH---Hc-----
Confidence 45566778888888887 431 111 14589999975433222 2 2334333 10
Q ss_pred ccccccccCCCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHH
Q 041524 151 VATGRSQSKHPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLE 202 (524)
Q Consensus 151 ~~~~~~~~~p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~ 202 (524)
....+..+|++.....+. .....++ ....|++..+-....+.+.+.
T Consensus 84 -----~~~~~~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kP~~~~~L~~~~~ 130 (143)
T 2qvg_A 84 -----DSSFTDIEVFVLTAAYTSKDKLAFES-LNIRGHLIKPLDYGEAIKLFW 130 (143)
T ss_dssp -----SGGGTTCEEEEEESCCCHHHHHHHTT-TTCCEEEESSCCHHHHHHHHH
T ss_pred -----CccccCCcEEEEeCCCCHHHHHHHHh-cCCCeEEECCCCHHHHHHHHH
Confidence 011155666554433332 2233333 345678887755544444443
No 164
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=34.69 E-value=4.3e+02 Score=29.01 Aligned_cols=75 Identities=4% Similarity=-0.108 Sum_probs=50.6
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEc---C-CCC---CHHH
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICG---F-CGE---TEEE 427 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G---~-PgE---T~ed 427 (524)
.++.++...++ |...+++-. |.+ ..+.+...++.+++. |..+..++.+. + |.+ +.+.
T Consensus 199 ~~~~i~~a~~~--Gvd~irIf~-s~n-----------~l~~l~~~i~~ak~~--G~~v~~~i~~~~d~~dp~r~~~~~e~ 262 (718)
T 3bg3_A 199 VFKFCEVAKEN--GMDVFRVFD-SLN-----------YLPNMLLGMEAAGSA--GGVVEAAISYTGDVADPSRTKYSLQY 262 (718)
T ss_dssp HHHHHHHHHHH--TCCEEEEEC-SSC-----------CHHHHHHHHHHHHTT--TSEEEEEEECCSCTTCTTCCTTCHHH
T ss_pred hHHHHHHHHhc--CcCEEEEEe-cHH-----------HHHHHHHHHHHHHHc--CCeEEEEEEeeccccCCCCCCCCHHH
Confidence 35666777777 888777653 222 356777888888888 77777666555 2 222 5677
Q ss_pred HHHHHHHHHHcCCCeEEE
Q 041524 428 HADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 428 ~~~tl~~l~~l~~d~~~i 445 (524)
+.+.++.+.+.+.+.+.+
T Consensus 263 ~~~~a~~l~~~Ga~~I~l 280 (718)
T 3bg3_A 263 YMGLAEELVRAGTHILCI 280 (718)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 778888888888876654
No 165
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=34.53 E-value=1.4e+02 Score=27.65 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=58.2
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhh
Q 041524 77 GRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKRE 146 (524)
Q Consensus 77 ~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~ 146 (524)
.+|.++- =|....+.+...|.+.||++.. .+. ..+|+|++........ ..++.+.|++.
T Consensus 130 ~~ILivd----d~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~-G~~l~~~ir~~------ 198 (254)
T 2ayx_A 130 MMILVVD----DHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMD-GYRLTQRIRQL------ 198 (254)
T ss_dssp CEEEEEE----SSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSC-CHHHHHHHHHH------
T ss_pred CEEEEEe----CCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCC-HHHHHHHHHhc------
Confidence 3555543 2456677888899999997532 221 3689999976543322 23344555432
Q ss_pred hhhcccccccccCCCCEE-EEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 147 WKKNVATGRSQSKHPPKI-VVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 147 ~~~~~~~~~~~~~p~~~I-vvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
.+..+| ++.|..........++ ....|++..+-....|.+.+..+
T Consensus 199 ------------~~~~piI~lt~~~~~~~~~~~~~-~G~~~~l~KP~~~~~L~~~l~~~ 244 (254)
T 2ayx_A 199 ------------GLTLPVIGVTANALAEEKQRCLE-SGMDSCLSKPVTLDVIKQTLTLY 244 (254)
T ss_dssp ------------HCCSCEEEEESSTTSHHHHHHHH-CCCEEEEESSCCHHHHHHHHHHH
T ss_pred ------------CCCCcEEEEECCCCHHHHHHHHH-cCCceEEECCCCHHHHHHHHHHH
Confidence 134444 4555433333344444 45568888886666555555543
No 166
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=33.74 E-value=2e+02 Score=28.20 Aligned_cols=150 Identities=12% Similarity=0.154 Sum_probs=79.2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+++.+++.++.+.+.|..-|-+-++...- |.+ .+ ...+-..++..+++.+.+..
T Consensus 28 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-------------Ga~--------~v-~~~eE~~Rv~pvI~~l~~~~- 84 (314)
T 2vef_A 28 QFFALEQALQQARKLIAEGASMLDIGGESTRP-------------GSS--------YV-EIEEEIQRVVPVIKAIRKES- 84 (314)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEECCC------------------C--------HH-HHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-------------CCC--------CC-CHHHHHHHHHHHHHHHHhhC-
Confidence 34578999999999999999988776654311 110 00 00111245666666676542
Q ss_pred ceEEEEecCC-------------------CCCCCHHHHHHHHcCCCCcceeecCcCC-cCHHHHhhh-----CCCC--C-
Q 041524 341 EMRFRYTSPH-------------------PKDFPDELLYIMRDRPNVCKYIHLPAQT-GNSAVLERM-----RRGY--T- 392 (524)
Q Consensus 341 ~~~ir~~s~~-------------------p~~~~~elL~~l~~~~~G~~~i~igiES-gs~~vL~~m-----~R~~--t- 392 (524)
...+.+.+.+ ....+++++++.+++ ||..+-+-.+- +.+..-..| .+|. +
T Consensus 85 ~vpiSIDT~~~~Va~aAl~aGa~iINDVsg~~~d~~m~~v~a~~--~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~ 162 (314)
T 2vef_A 85 DVLISIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVVAEA--RAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTE 162 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHTTCCEEEETTTTCSCTTHHHHHHHH--TCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC
T ss_pred CceEEEeCCCHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHc--CCCEEEEecCCCCCCCCccccccccccccccccc
Confidence 3455555422 222346777777777 66665553321 111110000 0000 0
Q ss_pred ----------HHH-----HHHHHHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 393 ----------REA-----YLDLVQKIRQIIPDV---GLSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 393 ----------~e~-----~~~~v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
.++ +.+.++.+.++ |+ .|..|=-+|| |-|.++-.++++-+.++
T Consensus 163 ~~~~~y~d~~v~e~v~~~l~~~i~~a~~~--GI~~~~IilDPGiGF-~kt~~~nl~ll~~l~~l 223 (314)
T 2vef_A 163 EELADFETLPIEELMEAFFERALARAAEA--GIAPENILLDPGIGF-GLTKKENLLLLRDLDKL 223 (314)
T ss_dssp --CHHHHHSCHHHHHHHHHHHHHHHHHHH--TCCGGGEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHc--CCChhhEEEeCCCCc-ccchHHHHHHHHHHHHh
Confidence 222 45667888888 87 4777777777 56766544455444443
No 167
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=33.17 E-value=2.4e+02 Score=27.66 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEE
Q 041524 265 VESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRF 344 (524)
Q Consensus 265 ~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~i 344 (524)
..++.+-+++..+.|++-+.+.++-|..+- ++...|.. ...+.+.+.++.+......+
T Consensus 59 l~~l~~il~~n~~~~I~~yRiSS~l~P~~t---------hp~~~~~~-------------~~~~~~~l~~iG~~a~~~~i 116 (310)
T 3tc3_A 59 LLCLKNILEWNLKHEILFFRISSNTIPLAS---------HPKFHVNW-------------KDKLSHILGDIGDFIKENSI 116 (310)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCTTSSTTTT---------STTCCCCH-------------HHHTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCEEEEeCcccCCCcc---------ccccccch-------------HHHHHHHHHHHHHHHHHcCc
Confidence 455555566677789998888876665441 11111110 12355556665554333344
Q ss_pred EEecCCCCCCC--------------------HHHHHHHHcCCCCcceeecCcCC----------------cCHHHHhhh-
Q 041524 345 RYTSPHPKDFP--------------------DELLYIMRDRPNVCKYIHLPAQT----------------GNSAVLERM- 387 (524)
Q Consensus 345 r~~s~~p~~~~--------------------~elL~~l~~~~~G~~~i~igiES----------------gs~~vL~~m- 387 (524)
|++ .||+.+. .+++++|-- + ..--||+|-.- .++.+.+++
T Consensus 117 RLS-~HPgqF~vL~S~~~~Vv~~SI~dL~yHa~~ld~mG~-~-~~i~IH~Gg~yGdK~~al~Rf~~n~~~L~~~vk~RL~ 193 (310)
T 3tc3_A 117 RIS-MHPGQYVVLNSVREEVVRSSIMELKYHADLLDSMGI-E-GKIQIHVGSSMNGKEESLNRFIENFRKLPSNISKRLV 193 (310)
T ss_dssp EEE-ECCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTC-C-CEEEEECCCCTTCHHHHHHHHHHHHTTSCHHHHTTEE
T ss_pred EEE-ecCCCCccCCCCCHHHHHHHHHHHHHHHHHHHhcCC-C-cCceeecCCcCCCHHHHHHHHHHHHHhCCHhhheEEE
Confidence 554 5776652 334455531 1 12347887443 344444433
Q ss_pred ----CCCCCHHHHHHHHHHHHHhCCCcEEEEeE---EEcCCCCCHHHHHHHHHHHHHcCCCeEEEEee-ecCCC
Q 041524 388 ----RRGYTREAYLDLVQKIRQIIPDVGLSSDF---ICGFCGETEEEHADTLTLMKAVGYDMAYMFAY-SMRER 453 (524)
Q Consensus 388 ----~R~~t~e~~~~~v~~ir~~~pgi~i~~~f---I~G~PgET~ed~~~tl~~l~~l~~d~~~i~~~-sp~pG 453 (524)
.|.+|.++.+. .+.+. ||.+..|+ -+-.++++.++ .+..+.+.=.... .+-| +|+||
T Consensus 194 lENDdk~~sv~dlL~---i~~~~--gIPiVfD~hHh~~~~~~~~~~e---~~~~~~~TW~~rP-~~H~S~~~~~ 258 (310)
T 3tc3_A 194 IENDDKVFSVKDCLW---ISERT--GIPVIFDNLHHSILNNGESLND---ALSLVRRTWKDRP-MIDYSEQEPG 258 (310)
T ss_dssp EECCSSSCCHHHHHH---HHHHH--CCCEEEEHHHHHHSCSSCCHHH---HHHHHHTTCSSCC-EEEECCBCTT
T ss_pred EecCCceecHHHHHH---HHhhc--CCCeEeeHhhHHhcCCCCCHHH---HHHHHHHhCCCCC-CeEeCCCCCC
Confidence 45678887775 45566 88887774 23345666554 4555554321221 2334 36666
No 168
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=33.10 E-value=1.9e+02 Score=27.22 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=62.2
Q ss_pred EecCCCCC-CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEE------------
Q 041524 346 YTSPHPKD-FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGL------------ 412 (524)
Q Consensus 346 ~~s~~p~~-~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i------------ 412 (524)
++...|+. .+.+.++.|.++ |...+.+|+ ..|.+.+...+.++.+|+. .+.+
T Consensus 12 i~~gDP~~~~t~~~~~~l~~~--GaD~ielG~-----------S~Gvt~~~~~~~v~~ir~~--~~Pivlm~y~~n~i~~ 76 (240)
T 1viz_A 12 VFKLDPNKDLPDEQLEILCES--GTDAVIIGG-----------SDGVTEDNVLRMMSKVRRF--LVPCVLEVSAIEAIVP 76 (240)
T ss_dssp EEEECTTSCCCHHHHHHHHTS--CCSEEEECC---------------CHHHHHHHHHHHTTS--SSCEEEECSCGGGCCS
T ss_pred EEeeCCCccccHHHHHHHHHc--CCCEEEECC-----------CCCCCHHHHHHHHHHhhCc--CCCEEEecCccccccC
Confidence 33345543 688999999998 999999999 2678899999999999872 3322
Q ss_pred --EEeEEEcCCCCCHHHHH--HHHHHHHHcC-----CCeEEEEeeecCCCChhcc
Q 041524 413 --SSDFICGFCGETEEEHA--DTLTLMKAVG-----YDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 413 --~~~fI~G~PgET~ed~~--~tl~~l~~l~-----~d~~~i~~~sp~pGT~~~~ 458 (524)
.+-++.-+|.|..+++. .-...+++.+ .+.+.--....-|+|...+
T Consensus 77 G~dg~iiPdLp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~r 131 (240)
T 1viz_A 77 GFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAA 131 (240)
T ss_dssp CCSEEEEEEETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHH
T ss_pred CCCEEEEcccCcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEE
Confidence 25567778888666662 2234466666 5544422223345666443
No 169
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=32.91 E-value=74 Score=28.72 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=49.5
Q ss_pred ecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCC
Q 041524 83 TYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPP 162 (524)
Q Consensus 83 t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 162 (524)
.++...+-...+.+.+.|.... .++..++=++.|||.+=.-.+...+++.|+.+ ..++
T Consensus 30 ~l~g~I~~~~a~~i~~~L~~l~----~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~------------------~~pV 87 (193)
T 1yg6_A 30 FLTGQVEDHMANLIVAQMLFLE----AENPEKDIYLYINSPGGVITAGMSIYDTMQFI------------------KPDV 87 (193)
T ss_dssp EEESSBCHHHHHHHHHHHHHHH----HHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS------------------SSCE
T ss_pred EEcCEEcHHHHHHHHHHHHHHH----hcCCCCCEEEEEECcCCCHHHHHHHHHHHHhc------------------CCCE
Confidence 4577899888898988887432 12334566788999887777777888888764 2466
Q ss_pred EEEEEcccccc
Q 041524 163 KIVVLGCMAER 173 (524)
Q Consensus 163 ~IvvgG~~at~ 173 (524)
.++++|..|+.
T Consensus 88 ~~~v~g~AaS~ 98 (193)
T 1yg6_A 88 STICMGQAASM 98 (193)
T ss_dssp EEEEEEEEETH
T ss_pred EEEEeeeHHHH
Confidence 77788877775
No 170
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=32.82 E-value=2.9e+02 Score=25.22 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=50.6
Q ss_pred CHHHHHHHHcCCCCcceeecC-cCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEE-eEEEcCCCCC-------H
Q 041524 355 PDELLYIMRDRPNVCKYIHLP-AQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSS-DFICGFCGET-------E 425 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~ig-iESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~-~fI~G~PgET-------~ 425 (524)
.++.++.++++ |+..|.+. ..... .... ... ..++.+.+++. |+.+.+ ..-..+...+ .
T Consensus 16 ~~~~l~~~~~~--G~~~vEl~~~~~~~----~~~~-~~~---~~~~~~~l~~~--gl~~~~~~~~~~~~~~~~~~~~~~~ 83 (278)
T 1i60_A 16 LKLDLELCEKH--GYDYIEIRTMDKLP----EYLK-DHS---LDDLAEYFQTH--HIKPLALNALVFFNNRDEKGHNEII 83 (278)
T ss_dssp HHHHHHHHHHT--TCSEEEEETTTHHH----HHTT-SSC---HHHHHHHHHTS--SCEEEEEEEEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCEEEEccHHHHH----HHhc-cCC---HHHHHHHHHHc--CCCeeeeccccccccCCHHHHHHHH
Confidence 37789999998 99999987 65321 1111 123 34455566777 887653 3333343112 4
Q ss_pred HHHHHHHHHHHHcCCCeEEEE
Q 041524 426 EEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 426 ed~~~tl~~l~~l~~d~~~i~ 446 (524)
+.+++.++++..++...+.+.
T Consensus 84 ~~~~~~i~~a~~lG~~~v~~~ 104 (278)
T 1i60_A 84 TEFKGMMETCKTLGVKYVVAV 104 (278)
T ss_dssp HHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEe
Confidence 567788888999999988764
No 171
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=32.58 E-value=95 Score=29.84 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhhCCceEEEE-ecCCCCC-CCHHHHHHHHcCCCCcceeecCcCCcCH---------HHHhhhCCCCCHHH
Q 041524 327 RFADLLDRLSLEFPEMRFRY-TSPHPKD-FPDELLYIMRDRPNVCKYIHLPAQTGNS---------AVLERMRRGYTREA 395 (524)
Q Consensus 327 ~~~~Ll~~l~~~~~~~~ir~-~s~~p~~-~~~elL~~l~~~~~G~~~i~igiESgs~---------~vL~~m~R~~t~e~ 395 (524)
++.+.++++.......-+-+ +.-.|+. .+.++++.|.++ |+..|.+|+--.+| ...+.+..|.+.++
T Consensus 6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~--GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~ 83 (271)
T 3nav_A 6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDA--GADALELGMPFSDPLADGPTIQGANLRALAAKTTPDI 83 (271)
T ss_dssp HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHT--TCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence 46667776665432222323 3234432 346778888888 99999999765332 23345667899999
Q ss_pred HHHHHHHHHHhCCCcE
Q 041524 396 YLDLVQKIRQIIPDVG 411 (524)
Q Consensus 396 ~~~~v~~ir~~~pgi~ 411 (524)
+.+.++.+|+..+.+.
T Consensus 84 ~~~~v~~~r~~~~~~P 99 (271)
T 3nav_A 84 CFELIAQIRARNPETP 99 (271)
T ss_dssp HHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHhcCCCCC
Confidence 9999999998744443
No 172
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=32.49 E-value=1.4e+02 Score=30.79 Aligned_cols=140 Identities=11% Similarity=0.078 Sum_probs=65.7
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh---C
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE---F 339 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~---~ 339 (524)
.+.+.+++.++.+.+.|+.-|-+-++...- |.+. . . ..+--.++..+++++.+. .
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTrP-------------Ga~~-V----s----~~EE~~Rv~pvI~~l~~~~~~~ 266 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTKP-------------DAKP-I----S----IEEEFNKLNEFLEYFKSQLANL 266 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCCC------------------C----C----HHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCC-------------CCCC-C----C----HHHHHHHHHHHHHHHHhhcccc
Confidence 678999999999999999977776543211 1100 0 0 001123344456666541 1
Q ss_pred C-ceEEEEecCCC------------CC---------CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCC------
Q 041524 340 P-EMRFRYTSPHP------------KD---------FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGY------ 391 (524)
Q Consensus 340 ~-~~~ir~~s~~p------------~~---------~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~------ 391 (524)
+ ...+.+.+.+| .+ .+++++++++++ ||..+-+-.+ |.++..+. ..|
T Consensus 267 ~~~vpISIDT~~~~VaeaAL~~~aGa~i~INDVsg~~d~~m~~v~a~~--g~~vVlMh~~-G~P~tmq~--~~y~dvv~e 341 (442)
T 3mcm_A 267 IYKPLVSIDTRKLEVMQKILAKHHDIIWMINDVECNNIEQKAQLIAKY--NKKYVIIHNL-GITDRNQY--LDKENAIDN 341 (442)
T ss_dssp SSCCEEEEECCCHHHHHHHHHHHGGGCCEEEECCCTTHHHHHHHHHHH--TCEEEEECC-------------------CT
T ss_pred CCCCeEEEeCCCHHHHHHHHhhCCCCCEEEEcCCCCCChHHHHHHHHh--CCeEEEECCC-CCCccccc--cCcccHHHH
Confidence 1 34555554321 01 134555555555 5555544333 22222110 001
Q ss_pred CHHHHHHHHHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHH
Q 041524 392 TREAYLDLVQKIRQIIPDV---GLSSDFICGFCGETEEEHADTL 432 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl 432 (524)
-.+.+.+.++.+.++ || .|..|=-+|| |.|.++=.+++
T Consensus 342 v~~~l~~~i~~a~~a--GI~~~~IilDPGiGF-~Kt~~~nl~lL 382 (442)
T 3mcm_A 342 VCDYIEQKKQILLKH--GIAQQNIYFDIGFGF-GKKSDTARYLL 382 (442)
T ss_dssp HHHHHHHHHHHHHHH--TCCGGGEEEECCCC-------------
T ss_pred HHHHHHHHHHHHHHc--CCCHHHEEEeCCCCC-CCCHHHHHHHH
Confidence 145566788889999 88 4788877888 66655433333
No 173
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=32.21 E-value=3.4e+02 Score=25.95 Aligned_cols=138 Identities=16% Similarity=0.250 Sum_probs=78.5
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
+..+++..++.++.+.++|..-|-+-++...- |... + ...+--.++..+++.+.+ .
T Consensus 25 ~~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRP-------------ga~~--------v-s~eeE~~Rv~pvi~~l~~--~ 80 (270)
T 4hb7_A 25 KFNNVETAINRVKAMIDEGADIIDVGGVSTRP-------------GHEM--------V-TLEEELNRVLPVVEAIVG--F 80 (270)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEESCCCST-------------TCCC--------C-CHHHHHHHHHHHHHHHTT--S
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCccCCC-------------CCCC--------C-chHHHHHHHHHHHHHhhc--C
Confidence 45678999999999999999988877655421 2110 0 001112345556666654 3
Q ss_pred ceEEEEecCC-------------------CCCCCHHHHHHHHcCCCCcceeecCcCCcC--HHHHhhhCCCCCHHHHHHH
Q 041524 341 EMRFRYTSPH-------------------PKDFPDELLYIMRDRPNVCKYIHLPAQTGN--SAVLERMRRGYTREAYLDL 399 (524)
Q Consensus 341 ~~~ir~~s~~-------------------p~~~~~elL~~l~~~~~G~~~i~igiESgs--~~vL~~m~R~~t~e~~~~~ 399 (524)
...+.+.+.+ ....++++++.+++. +|..+-+=.+-.. +.+...+ .+.+.+.
T Consensus 81 ~v~iSIDT~~~~Va~~al~aGa~iINDVs~g~~d~~m~~~va~~--~~~~vlMH~~~~p~~~~vv~ev-----~~~l~~~ 153 (270)
T 4hb7_A 81 DVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKY--DAEIILMHNGNGNRDEPVVEEM-----LTSLLAQ 153 (270)
T ss_dssp SSEEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHT--TCEEEEECCCSSCCSSCHHHHH-----HHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHhccceeccccccccchhHHHHHHHc--CCCeEEeccccCCccccchhHH-----HHHHHHH
Confidence 4556655522 233567888888887 7776654322111 0111110 2345556
Q ss_pred HHHHHHhCCCc---EEEEeEEEcCCCCCHHHHHHHH
Q 041524 400 VQKIRQIIPDV---GLSSDFICGFCGETEEEHADTL 432 (524)
Q Consensus 400 v~~ir~~~pgi---~i~~~fI~G~PgET~ed~~~tl 432 (524)
++.+.++ |+ .|..|==+|| |-|.++=.+.+
T Consensus 154 i~~a~~a--GI~~~~IilDPGiGF-gKt~~~N~~ll 186 (270)
T 4hb7_A 154 AHQAKIA--GIPSNKIWLDPGIGF-AKTRNEEAEVM 186 (270)
T ss_dssp HHHHHHT--TCCGGGEEEECCTTS-SCCHHHHHHHH
T ss_pred HHHHHHc--CCCCceEEEeCCCCc-ccccccHHHHH
Confidence 7778888 77 4777877888 66666533443
No 174
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=31.50 E-value=1.1e+02 Score=29.12 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCH-----HHHh----hhCCCCCHHHHHHHHHHHHHhC
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNS-----AVLE----RMRRGYTREAYLDLVQKIRQII 407 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~-----~vL~----~m~R~~t~e~~~~~v~~ir~~~ 407 (524)
.+.++.|.++ |+..|++|+--.+| .+.+ .+..|.+.+...+.++.+|+.+
T Consensus 34 ~~~~~~l~~~--GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~ 92 (268)
T 1qop_A 34 LKIIDTLIDA--GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKH 92 (268)
T ss_dssp HHHHHHHHHT--TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHC--CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 3456666677 88888888844332 2222 3444777888888888888773
No 175
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=31.25 E-value=1e+02 Score=27.56 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
+....+.+...|.+.||++.. .+. ..+|+|++........ ..++...+++.
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~-g~~~~~~l~~~------------------ 73 (230)
T 2oqr_A 13 EESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMS-GTDVCKQLRAR------------------ 73 (230)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSC-HHHHHHHHHHH------------------
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCC-HHHHHHHHHcC------------------
Confidence 345567788888889997521 111 2689999976543322 23344443321
Q ss_pred CCCCE-EEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 159 KHPPK-IVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 159 ~p~~~-IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
|+.+ |++.+..........++ ....|++..+-....+...+..+..+
T Consensus 74 -~~~~ii~lt~~~~~~~~~~~~~-~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 74 -SSVPVIMVTARDSEIDKVVGLE-LGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp -CSCSEEEEECCHHHHHHHHHHH-HCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred -CCCCEEEEeCCCcHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 3444 44555433222333444 34567787776666666666665544
No 176
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=30.56 E-value=2.3e+02 Score=24.83 Aligned_cols=98 Identities=14% Similarity=0.037 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHCC-Ceec--cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 91 NDMEIVLSIMKNAG-YSEV--INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 91 ~d~e~i~~~L~~~G-y~~~--~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
...+.+...|...| |+++ +.+. ..+|+|++.-...... ..++...+++ .
T Consensus 16 ~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~-g~~~~~~lr~------------------~ 76 (215)
T 1a04_A 16 MLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMN-GLETLDKLRE------------------K 76 (215)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSC-HHHHHHHHHH------------------S
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCc-HHHHHHHHHH------------------h
Confidence 44556666776653 6541 1221 2579999976543322 2334444432 2
Q ss_pred CCCCEEEEE-cccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 159 KHPPKIVVL-GCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 159 ~p~~~Ivvg-G~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
.|..+|++. +..........++ ....|++..+-....+...+..+..|.
T Consensus 77 ~~~~~ii~ls~~~~~~~~~~~~~-~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 77 SLSGRIVVFSVSNHEEDVVTALK-RGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp CCCSEEEEEECCCCHHHHHHHHH-TTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 356665554 4322222233443 455688888866666666666655543
No 177
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=30.42 E-value=2.9e+02 Score=27.86 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEec
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQ 288 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~ 288 (524)
.++++++++++.+.++|++.|.+.|.
T Consensus 124 ~~~e~~~~~a~~~~~~G~~~iKl~G~ 149 (405)
T 3rr1_A 124 DRPADVIAGMKALQAGGFDHFKLNGC 149 (405)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 46899999999999999999998553
No 178
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=30.36 E-value=70 Score=30.33 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=51.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHCCCeec-cC-----------CCCCCcEEEEeeccCcchH---HHHHHHHHHHHHHh
Q 041524 79 IYQETYGCQMNVNDMEIVLSIMKNAGYSEV-IN-----------VPENAEVIFINTCAIRDYA---EHKVWQRLNYFWFL 143 (524)
Q Consensus 79 ~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~-~~-----------~~~~aDvv~intc~v~~~a---~~~~~~~l~~~~~~ 143 (524)
+.++.-.|. +........++.|-..- .- ..+..|.|++.|.-.-... ....++.+++++.+
T Consensus 113 itvH~Ea~~----~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~ 188 (246)
T 3inp_A 113 IVFHPEASE----HIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKW 188 (246)
T ss_dssp EEECGGGCS----CHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHH
T ss_pred EEEccccch----hHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHH
Confidence 555555553 35556666688876421 11 1246899998653221111 12345666666444
Q ss_pred hhhhhhcccccccccCCCCEEEE-EcccccccHHHHHhhCCcceEEECCC
Q 041524 144 KREWKKNVATGRSQSKHPPKIVV-LGCMAERLKDKILDADKMVDVVCGPD 192 (524)
Q Consensus 144 ~~~~~~~~~~~~~~~~p~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~ge 192 (524)
.. ++.++..|.| ||.-++. ..++.+ .++|++|.|-
T Consensus 189 ~~-----------~~~~~~~I~VDGGI~~~t-i~~~~~--aGAD~~V~GS 224 (246)
T 3inp_A 189 IS-----------STDRDILLEIDGGVNPYN-IAEIAV--CGVNAFVAGS 224 (246)
T ss_dssp HH-----------HHTSCCEEEEESSCCTTT-HHHHHT--TTCCEEEESH
T ss_pred HH-----------hcCCCeeEEEECCcCHHH-HHHHHH--cCCCEEEEeh
Confidence 32 1235676755 5555554 555554 4799998883
No 179
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=30.35 E-value=2.2e+02 Score=25.07 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHCCCeecc-CC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCC
Q 041524 91 NDMEIVLSIMKNAGYSEVI-NV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKH 160 (524)
Q Consensus 91 ~d~e~i~~~L~~~Gy~~~~-~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 160 (524)
...+.+...|.+.||++.. .+ ...+|+|+ +. .....++.+.+++ . +
T Consensus 11 ~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi---lp--~~~g~~~~~~lr~------------------~-~ 66 (223)
T 2hqr_A 11 VLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM---VS--DKNALSFVSRIKE------------------K-H 66 (223)
T ss_dssp HHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE---EC--CTTHHHHHHHHHH------------------H-C
T ss_pred HHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE---eC--CCCHHHHHHHHHh------------------C-C
Confidence 4456677778778886521 11 13689988 22 2122334444332 1 3
Q ss_pred -CCEEEEEccccc-ccHHHHHhhCCcceEEECCC-CcccHHHHHHHHhcCC
Q 041524 161 -PPKIVVLGCMAE-RLKDKILDADKMVDVVCGPD-AYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 161 -~~~IvvgG~~at-~~~e~~l~~~~~vD~Vv~ge-ge~~l~~Ll~~~~~g~ 208 (524)
+.+|++...+.. ......++ ....|++..+- ....+...+..+..+.
T Consensus 67 ~~~~ii~lt~~~~~~~~~~~~~-~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 67 SSIVVLVSSDNPTSEEEVHAFE-QGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp TTSEEEEEESSCCHHHHHHHHH-HTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred CCCcEEEEECCCCHHHHHHHHH-cCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 566655433333 22334444 35568888886 6666666666665543
No 180
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=29.70 E-value=2.3e+02 Score=23.39 Aligned_cols=31 Identities=6% Similarity=0.056 Sum_probs=16.9
Q ss_pred CCCCEEEEEcccccccHHHHHhhCCcceEEECCC
Q 041524 159 KHPPKIVVLGCMAERLKDKILDADKMVDVVCGPD 192 (524)
Q Consensus 159 ~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~ge 192 (524)
+|+.+|++--.... ..+.+++ -++|.|+.++
T Consensus 96 ~~~~~iiar~~~~~--~~~~l~~-~G~d~vi~p~ 126 (140)
T 3fwz_A 96 NPDIEIIARAHYDD--EVAYITE-RGANQVVMGE 126 (140)
T ss_dssp CSSSEEEEEESSHH--HHHHHHH-TTCSEEEEHH
T ss_pred CCCCeEEEEECCHH--HHHHHHH-CCCCEEECch
Confidence 46677775332222 2234444 4689888764
No 181
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A
Probab=29.57 E-value=2.8e+02 Score=28.02 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=43.5
Q ss_pred CCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh-CCCC---CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCC
Q 041524 354 FPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM-RRGY---TREAYLDLVQKIRQIIPDVGLSSDFICGFCG 422 (524)
Q Consensus 354 ~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m-~R~~---t~e~~~~~v~~ir~~~pgi~i~~~fI~G~Pg 422 (524)
++++.++.|+++ |++.|-|++-.-. +... +.++ ..+.+.++|+.++++ |+.+..|+= +.||
T Consensus 74 ite~D~~~ik~~--G~N~VRipi~~~~---~~~~~~~py~~~~~~~ld~vV~~a~~~--Gl~VILDlH-~~pG 138 (399)
T 3n9k_A 74 ITEQDFKQISNL--GLNFVRIPIGYWA---FQLLDNDPYVQGQVQYLEKALGWARKN--NIRVWIDLH-GAPG 138 (399)
T ss_dssp SCHHHHHHHHHT--TCCEEEEEEEGGG---TCCCTTCCCCCCHHHHHHHHHHHHHHT--TCEEEEEEE-ECTT
T ss_pred CcHHHHHHHHHc--CCCEEEEcccHHH---ccCCCCCccchhHHHHHHHHHHHHHHC--CCEEEEEec-CCCc
Confidence 578999999998 9999888874210 0000 1112 478899999999999 999988874 4553
No 182
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=29.32 E-value=3.2e+02 Score=24.67 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=47.1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
|..++++.++-++.+.+.|++-|.+...+ ....+.++.+.+ +
T Consensus 20 ~~~~~~~~~~~~~~l~~gGv~~iel~~k~------------------------------------~~~~~~i~~~~~--~ 61 (207)
T 2yw3_A 20 TVRGGEDLLGLARVLEEEGVGALEITLRT------------------------------------EKGLEALKALRK--S 61 (207)
T ss_dssp CCCSCCCHHHHHHHHHHTTCCEEEEECSS------------------------------------THHHHHHHHHTT--S
T ss_pred eCCCHHHHHHHHHHHHHcCCCEEEEeCCC------------------------------------hHHHHHHHHHhC--C
Confidence 34456677778888888899987765211 123456666666 4
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecC
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLP 375 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~ig 375 (524)
..-+...+ .++.+.++...++ |...+|.|
T Consensus 62 ~~~~gag~----vl~~d~~~~A~~~--GAd~v~~~ 90 (207)
T 2yw3_A 62 GLLLGAGT----VRSPKEAEAALEA--GAAFLVSP 90 (207)
T ss_dssp SCEEEEES----CCSHHHHHHHHHH--TCSEEEES
T ss_pred CCEEEeCe----EeeHHHHHHHHHc--CCCEEEcC
Confidence 45555543 3466788888788 99999988
No 183
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=29.32 E-value=3.5e+02 Score=25.07 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=41.2
Q ss_pred HHHHHHcCCCCcceeecCcCCcC----------HHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHH
Q 041524 358 LLYIMRDRPNVCKYIHLPAQTGN----------SAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEE 427 (524)
Q Consensus 358 lL~~l~~~~~G~~~i~igiESgs----------~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed 427 (524)
.++..++. |++.+.+.+-++. ++.++. ..+.+.++.+.+.+. |+.+...-+-++++.-..+
T Consensus 93 ~i~~a~~l--G~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~~~a~~~--Gv~l~lEn~~~~~~~~~~~ 163 (294)
T 3vni_A 93 LLKRLYKL--DVHLIGGALYSYWPIDYTKTIDKKGDWER-----SVESVREVAKVAEAC--GVDFCLEVLNRFENYLINT 163 (294)
T ss_dssp HHHHHHHH--TCCEEEESTTSCSSCCTTSCCCHHHHHHH-----HHHHHHHHHHHHHHT--TCEEEEECCCTTTCSSCCS
T ss_pred HHHHHHHh--CCCeeeccccCCCCCcCCCCCCHHHHHHH-----HHHHHHHHHHHHHHc--CCEEEEEecCcccCcccCC
Confidence 46666677 8888864333221 111111 134455556666677 8887777665444432223
Q ss_pred HHHHHHHHHHcCCCeEE
Q 041524 428 HADTLTLMKAVGYDMAY 444 (524)
Q Consensus 428 ~~~tl~~l~~l~~d~~~ 444 (524)
..+..+++++++.+.+.
T Consensus 164 ~~~~~~l~~~v~~~~vg 180 (294)
T 3vni_A 164 AQEGVDFVKQVDHNNVK 180 (294)
T ss_dssp HHHHHHHHHHHCCTTEE
T ss_pred HHHHHHHHHHcCCCCEE
Confidence 33455566666544444
No 184
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=29.23 E-value=1.5e+02 Score=28.15 Aligned_cols=76 Identities=11% Similarity=-0.059 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHH
Q 041524 326 LRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQ 405 (524)
Q Consensus 326 ~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~ 405 (524)
..+..|...+.-..+..||=+.. ....++.+-++|++. |..+.|+.+.+...- +.-++....++--.+++.+|+
T Consensus 19 a~LtRLa~TL~~Vp~l~WIVVEd--~~~~~~~v~~lL~~s--gl~y~HL~~~~~~~~--~~~~~prg~~qRn~AL~~Ir~ 92 (246)
T 2d0j_A 19 AELTRLANTFRQVAQLHWILVED--AAARSELVSRFLARA--GLPSTHLHVPTPRRY--KRPGLPRATEQRNAGLAWLRQ 92 (246)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEES--SSSCCHHHHHHHHHS--CSCEEEEECCCCCC------CCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEEEcC--CCCCCHHHHHHHHHc--CCceEEEecCCcccc--CCCCCcchHHHHHHHHHHHHH
Confidence 34555666665555555765542 233567788999999 999999998864321 111223456777889999998
Q ss_pred hC
Q 041524 406 II 407 (524)
Q Consensus 406 ~~ 407 (524)
..
T Consensus 93 ~~ 94 (246)
T 2d0j_A 93 RH 94 (246)
T ss_dssp HS
T ss_pred hc
Confidence 84
No 185
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=29.23 E-value=71 Score=31.54 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=40.9
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
..+.+++|++. |++.+-+.+. .+|. .-..+.+.++++++.++++ |+.+..+|-.
T Consensus 29 ~~~~~~ilk~~--G~n~vRlri~-v~P~-----~g~~d~~~~~~~~~~ak~~--Gl~v~ld~hy 82 (334)
T 1fob_A 29 TQALETILADA--GINSIRQRVW-VNPS-----DGSYDLDYNLELAKRVKAA--GMSLYLDLHL 82 (334)
T ss_dssp BCCHHHHHHHH--TCCEEEEEEC-SCCT-----TCTTCHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred CchHHHHHHHc--CCCEEEEEEE-ECCC-----CCccCHHHHHHHHHHHHHC--CCEEEEEecc
Confidence 34678999998 9999888654 2222 1135799999999999999 9998888754
No 186
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=29.07 E-value=1.6e+02 Score=28.55 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=44.7
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFP 340 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~ 340 (524)
--..+++|+++.....+.|..-+.+.--+-. |++. .....+.++++.|.+..+
T Consensus 29 lPvTpeEia~~A~~~~~AGAaivHlH~Rd~~--------------G~ps-------------~d~~~~~e~~~~IR~~~p 81 (284)
T 3chv_A 29 VPITVSEQVESTQEAFEAGAAIAHCHVRNDD--------------GTPS-------------SDPDRFARLTEGLHTHCP 81 (284)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEECEECTT--------------SCEE-------------CCHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeeecCCC--------------CCcC-------------CCHHHHHHHHHHHHHhCC
Confidence 4468999999999999999998887653321 2211 113568999999998777
Q ss_pred ceEEEEec
Q 041524 341 EMRFRYTS 348 (524)
Q Consensus 341 ~~~ir~~s 348 (524)
.+-+.+++
T Consensus 82 d~ii~~TT 89 (284)
T 3chv_A 82 GMIVQFST 89 (284)
T ss_dssp TCEEEECC
T ss_pred CeEEEeCC
Confidence 88887875
No 187
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=28.78 E-value=3.5e+02 Score=24.99 Aligned_cols=87 Identities=11% Similarity=0.116 Sum_probs=56.0
Q ss_pred eEEEEecC-CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcC
Q 041524 342 MRFRYTSP-HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF 420 (524)
Q Consensus 342 ~~ir~~s~-~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~ 420 (524)
+++.+.+. -+..--++.++.+++. |+..|.+..... .+...++.+.+++. |+.+.+- -.++
T Consensus 26 mklg~~~~~~~~~~~~~~l~~~~~~--G~~~vEl~~~~~-------------~~~~~~~~~~l~~~--gl~v~~~-~~~~ 87 (287)
T 3kws_A 26 LKLSFQEGIAPGESLNEKLDFMEKL--GVVGFEPGGGGL-------------AGRVNEIKQALNGR--NIKVSAI-CAGF 87 (287)
T ss_dssp CEEEEETTSSCCSSHHHHHHHHHHT--TCCEEECBSTTC-------------GGGHHHHHHHHTTS--SCEECEE-ECCC
T ss_pred eeEEEEecccCCCCHHHHHHHHHHc--CCCEEEecCCch-------------HHHHHHHHHHHHHc--CCeEEEE-ecCC
Confidence 46655542 2222236899999999 999999987731 23455555666677 8876532 2233
Q ss_pred CCC-----------CHHHHHHHHHHHHHcCCCeEEEE
Q 041524 421 CGE-----------TEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 421 PgE-----------T~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
++. ..+.+++.++++..++...+.+.
T Consensus 88 ~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~ 124 (287)
T 3kws_A 88 KGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIV 124 (287)
T ss_dssp CSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 321 23677888999999999987653
No 188
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=28.66 E-value=3.3e+02 Score=25.06 Aligned_cols=85 Identities=6% Similarity=0.055 Sum_probs=54.5
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcE---EEEe--EEEcCCCCC-----
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVG---LSSD--FICGFCGET----- 424 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~---i~~~--fI~G~PgET----- 424 (524)
-++.++.+++. |+..|.+...... .......+.+...++.+.+++. |+. ++.. +.+.+....
T Consensus 14 ~~~~l~~~~~~--G~~~iEl~~~~~~----~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~h~~~~~~~~~~~~~~r~ 85 (287)
T 2x7v_A 14 FDRVPQDTVNI--GGNSFQIFPHNAR----SWSAKLPSDEAATKFKREMKKH--GIDWENAFCHSGYLINLASPKDDIWQ 85 (287)
T ss_dssp GGGHHHHHHHT--TCSEEEECSCCCS----SSCCCCCCHHHHHHHHHHHHHH--TCCGGGEEEECCTTCCTTCSSHHHHH
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCcc----cccccCCCHHHHHHHHHHHHHc--CCCcceeEEecccccccCCCCHHHHH
Confidence 36788999998 9999988654311 0112244667777888888888 876 4332 112222222
Q ss_pred --HHHHHHHHHHHHHcCCCeEEEEe
Q 041524 425 --EEEHADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 425 --~ed~~~tl~~l~~l~~d~~~i~~ 447 (524)
.+.+++.++++.+++...+.+.+
T Consensus 86 ~~~~~~~~~i~~A~~lG~~~v~~~~ 110 (287)
T 2x7v_A 86 KSVELLKKEVEICRKLGIRYLNIHP 110 (287)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEec
Confidence 35677888889999998876643
No 189
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=28.52 E-value=4.7e+02 Score=26.37 Aligned_cols=84 Identities=13% Similarity=0.055 Sum_probs=47.1
Q ss_pred HHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHH----HHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHH
Q 041524 357 ELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREA----YLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTL 432 (524)
Q Consensus 357 elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~----~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl 432 (524)
++++.|++....+..+.+|=|... -|..+-..+. +...++.+|+..|++.|..++--|- ..+.++.-+
T Consensus 145 ~~l~~l~~~g~~~~~vqvGNEi~~-----g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~---~~~~~~~~~ 216 (399)
T 1ur4_A 145 QSLKAMKAAGIDIGMVQVGNETNG-----GLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPE---TSGRYAWIA 216 (399)
T ss_dssp HHHHHHHHTTCCEEEEEESSSCSS-----CBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTT---STTHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEcccccc-----ccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCc---chHHHHHHH
Confidence 566667776334567778877422 1111223344 5566688899999987765543332 223333334
Q ss_pred HHHHHc--CCCeEEEEee
Q 041524 433 TLMKAV--GYDMAYMFAY 448 (524)
Q Consensus 433 ~~l~~l--~~d~~~i~~~ 448 (524)
+.+... .+|.+.++.|
T Consensus 217 d~l~~~g~d~DvIG~syY 234 (399)
T 1ur4_A 217 ETLHRHHVDYDVFASSYY 234 (399)
T ss_dssp HHHHHTTCCCSEEEEEEC
T ss_pred HHHHHcCCCcCeEeEecC
Confidence 444444 5777777643
No 190
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=28.31 E-value=1.4e+02 Score=29.64 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=36.1
Q ss_pred eEEEEEEcccCCccCcccccCCCCCccccCChHHHHHHHHHHHHCCCcEEEEEec
Q 041524 234 VTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVKEVDELWKEGVKEVTLLGQ 288 (524)
Q Consensus 234 ~~a~v~isRGC~~~CsFC~vp~~~G~~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~ 288 (524)
....|-+..| ... -.++..-|-+| .+++.+++|++.+.+.|++.|.|.+-
T Consensus 46 LI~PlFV~eg-~~~---~~I~SMPGv~r-~sid~l~~~~~~~~~lGi~av~LFgv 95 (356)
T 3obk_A 46 LIYPLFVHDE-ETS---VPIPSMPGQSR-LSMEDLLKEVGEARSYGIKAFMLFPK 95 (356)
T ss_dssp EEEEEEEESS-SSC---EECTTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ceeeEEEecC-CCC---cccCCCCCceE-ECHHHHHHHHHHHHHCCCCEEEEecC
Confidence 3444555566 221 35666666555 49999999999999999999998874
No 191
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=27.81 E-value=3e+02 Score=25.51 Aligned_cols=98 Identities=9% Similarity=0.029 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHCCCeeccCCC----------CCCcEEEEeecc----------CcchHHHHHHHHHHHHHHhhhhh
Q 041524 88 MNVNDMEIVLSIMKNAGYSEVINVP----------ENAEVIFINTCA----------IRDYAEHKVWQRLNYFWFLKREW 147 (524)
Q Consensus 88 ~N~~d~e~i~~~L~~~Gy~~~~~~~----------~~aDvv~intc~----------v~~~a~~~~~~~l~~~~~~~~~~ 147 (524)
+...+.........+.|.+.++.-. -.+++|.+|--- ++....+++.+.++.+
T Consensus 101 ~~~~e~~~k~~~A~~~GL~~ivcVge~~e~~~~~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~------- 173 (225)
T 1hg3_A 101 MILADLEAAIRRAEEVGLMTMVCSNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKV------- 173 (225)
T ss_dssp CBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhc-------
Confidence 3455666666677788987642211 256899997642 2222234455555543
Q ss_pred hhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCc---ccHHHHHHHH
Q 041524 148 KKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAY---RDLPRLLEEV 204 (524)
Q Consensus 148 ~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege---~~l~~Ll~~~ 204 (524)
.++.+|+.||..-+..-.+++.. +.+|-+..|++- .++.++++.+
T Consensus 174 -----------~~~~~ilyggsV~~~n~~~~~~~-~~vDG~LVG~a~l~a~~~~~~i~~l 221 (225)
T 1hg3_A 174 -----------NPEVKVLCGAGISTGEDVKKAIE-LGTVGVLLASGVTKAKDPEKAIWDL 221 (225)
T ss_dssp -----------CTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTCSSHHHHHHHH
T ss_pred -----------cCCCEEEEeCCCCcHHHHHHHHh-CCCCEEEeCHHHHCCcCHHHHHHHH
Confidence 24678888887776666666654 689999998763 3455555544
No 192
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=27.70 E-value=1.4e+02 Score=29.42 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhhC-CceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhh-hCCC-------------C
Q 041524 327 RFADLLDRLSLEF-PEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLER-MRRG-------------Y 391 (524)
Q Consensus 327 ~~~~Ll~~l~~~~-~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~-m~R~-------------~ 391 (524)
.+.++++.+.+.. +...+.++. . ...+++.|.+. |+..+++.- ..+.+-++. ++.. .
T Consensus 232 ~~~~i~~~i~~~~~~~~~ih~c~-g----~~~~l~~l~~~--g~d~~~~d~-~~d~~~~~~~~g~~~~l~Gnldp~~l~~ 303 (353)
T 1j93_A 232 YLKQIVDSVKLTHPNLPLILYAS-G----SGGLLERLPLT--GVDVVSLDW-TVDMADGRRRLGPNVAIQGNVDPGVLFG 303 (353)
T ss_dssp HHHHHHHHHHHHSTTCCEEEECS-S----CTTTGGGGGGG--CCSEEECCT-TSCHHHHHHHTCSSSEEECCBCGGGGGS
T ss_pred HHHHHHHHHHHhCCCCCEEEECC-C----hHHHHHHHHhc--CCCEEEeCC-CCCHHHHHHHcCCCeEEEecCCHHHHcC
Confidence 3556666666542 222344431 1 12467777777 888776532 224444443 3322 1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC-CHHHHHHHHHHHHHc
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGE-TEEEHADTLTLMKAV 438 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE-T~ed~~~tl~~l~~l 438 (524)
+.|++.+.++.+-+.++.-....+.-.|+|.+ ..|.++..++.+++.
T Consensus 304 ~~e~i~~~v~~~l~~~~~~g~I~~~g~gi~~~~~~enl~a~ve~v~~~ 351 (353)
T 1j93_A 304 SKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGL 351 (353)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEBCBSSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 56677766666655422101111111344433 445555566666554
No 193
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=27.22 E-value=1e+02 Score=29.46 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcC-------CCC-----
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF-------CGE----- 423 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~-------PgE----- 423 (524)
++.++.++++ |+..|.+...... .. -+.+.+ ++-+.+++. |+.+.+-- +++ |.+
T Consensus 32 ~~~l~~~a~~--G~~~VEl~~~~~~-----~~-~~~~~~---~~~~~l~~~--GL~v~~~~-~~~~~~~~~~p~~~~~~~ 97 (303)
T 3l23_A 32 AANLRKVKDM--GYSKLELAGYGKG-----AI-GGVPMM---DFKKMAEDA--GLKIISSH-VNPVDTSISDPFKAMIFK 97 (303)
T ss_dssp HHHHHHHHHT--TCCEEEECCEETT-----EE-TTEEHH---HHHHHHHHT--TCEEEEEE-CCCBCTTCSSTTTTBCCS
T ss_pred HHHHHHHHHc--CCCEEEeccccCc-----cc-CCCCHH---HHHHHHHHc--CCeEEEEe-cccccccccCcccccccc
Confidence 6789999999 9999998753211 00 112343 444556677 88875422 222 321
Q ss_pred --------CHHHHHHHHHHHHHcCCCeEEE
Q 041524 424 --------TEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 424 --------T~ed~~~tl~~l~~l~~d~~~i 445 (524)
..+.+++.++++.+++...+.+
T Consensus 98 ~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~ 127 (303)
T 3l23_A 98 YSKEVTPKIMEYWKATAADHAKLGCKYLIQ 127 (303)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3567888999999999998866
No 194
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=27.05 E-value=2.6e+02 Score=27.51 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.|.| .++.. .+..+.++++.+.+..|..
T Consensus 166 ~~~~~~~~~~~~~~~~Ga~~i~l~D-T~G~~------------------------------~P~~v~~lv~~l~~~~p~~ 214 (337)
T 3ble_A 166 NSPDYVKSLVEHLSKEHIERIFLPD-TLGVL------------------------------SPEETFQGVDSLIQKYPDI 214 (337)
T ss_dssp HCHHHHHHHHHHHHTSCCSEEEEEC-TTCCC------------------------------CHHHHHHHHHHHHHHCTTS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-CCCCc------------------------------CHHHHHHHHHHHHHhcCCC
Confidence 4688899999999999999998876 33211 1356888888888876655
Q ss_pred EEEEecCCC-CCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCC-CCHHHHHHHHHHHHHhCCCcEEEEeEEEcC
Q 041524 343 RFRYTSPHP-KDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRG-YTREAYLDLVQKIRQIIPDVGLSSDFICGF 420 (524)
Q Consensus 343 ~ir~~s~~p-~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~-~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~ 420 (524)
.+.+..-+- ..-....+..+. + |+.+++-.+-.... +-| ...|++...++.. . |+.
T Consensus 215 ~i~~H~Hnd~GlA~AN~laAv~-a--Ga~~vd~tv~GlG~------~aGN~~~E~lv~~L~~~--~--g~~--------- 272 (337)
T 3ble_A 215 HFEFHGHNDYDLSVANSLQAIR-A--GVKGLHASINGLGE------RAGNTPLEALVTTIHDK--S--NSK--------- 272 (337)
T ss_dssp CEEEECBCTTSCHHHHHHHHHH-T--TCSEEEEBGGGCSS------TTCBCBHHHHHHHHHHH--S--SCC---------
T ss_pred eEEEEecCCcchHHHHHHHHHH-h--CCCEEEEecccccc------cccchhHHHHHHHHHHh--c--CCC---------
Confidence 666653211 111244555554 4 99999866554332 112 3466666555433 1 321
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 041524 421 CGETEEEHADTLTLMKAV 438 (524)
Q Consensus 421 PgET~ed~~~tl~~l~~l 438 (524)
+|-..+.+.++.+++.++
T Consensus 273 tgidl~~L~~~~~~v~~~ 290 (337)
T 3ble_A 273 TNINEIAITEASRLVEVF 290 (337)
T ss_dssp CCCCGGGHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 234566677777777654
No 195
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=27.04 E-value=2.2e+02 Score=26.45 Aligned_cols=83 Identities=11% Similarity=-0.016 Sum_probs=52.7
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeE-EEcCCC--C---CHHHH
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDF-ICGFCG--E---TEEEH 428 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~f-I~G~Pg--E---T~ed~ 428 (524)
-++.++.++++ |+..|.+..... .. +. ..+.+...++.+.+++. |+.+.+-- .+++|. . ..+.+
T Consensus 17 ~~~~l~~~~~~--G~~~vEl~~~~~-~~-~~----~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~~~~~~~~~~~~~ 86 (286)
T 3dx5_A 17 FTDIVQFAYEN--GFEGIELWGTHA-QN-LY----MQEYETTERELNCLKDK--TLEITMISDYLDISLSADFEKTIEKC 86 (286)
T ss_dssp HHHHHHHHHHT--TCCEEEEEHHHH-HH-HH----HHCHHHHHHHHHHTGGG--TCCEEEEECCCCCSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCEEEEccccc-cc-cc----ccCHHHHHHHHHHHHHc--CCeEEEEecCCCCCCchhHHHHHHHH
Confidence 36799999998 999998832110 11 11 12456667777777788 88766421 112232 1 23567
Q ss_pred HHHHHHHHHcCCCeEEEEe
Q 041524 429 ADTLTLMKAVGYDMAYMFA 447 (524)
Q Consensus 429 ~~tl~~l~~l~~d~~~i~~ 447 (524)
++.++++..++...+.+++
T Consensus 87 ~~~i~~A~~lG~~~v~~~~ 105 (286)
T 3dx5_A 87 EQLAILANWFKTNKIRTFA 105 (286)
T ss_dssp HHHHHHHHHHTCCEEEECS
T ss_pred HHHHHHHHHhCCCEEEEcC
Confidence 7889999999999887643
No 196
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=27.03 E-value=4.5e+02 Score=25.66 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=43.5
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 260 ERSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 260 ~Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
.--..+++|+++.....+.|..-+.+.--+-- . |++. .....+.++++.|.+.
T Consensus 26 ~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~-d------------G~ps-------------~d~~~y~e~i~~IR~~- 78 (314)
T 3lot_A 26 YLPVTPDQIVEEAVKAAEAGAGMVHIHARDPK-D------------GRPT-------------TDVEVFRYICREIKKQ- 78 (314)
T ss_dssp TSCCSHHHHHHHHHHHHHHTCSEEEECEECTT-T------------CCEE-------------CCHHHHHHHHHHHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeecCCC-C------------CCcC-------------CCHHHHHHHHHHHHhc-
Confidence 34567999999999999999988887653310 0 3221 1135689999999876
Q ss_pred CceEEEEecC
Q 041524 340 PEMRFRYTSP 349 (524)
Q Consensus 340 ~~~~ir~~s~ 349 (524)
+.+-+.+++-
T Consensus 79 ~d~iI~~TTg 88 (314)
T 3lot_A 79 SDVVINVTTG 88 (314)
T ss_dssp CCCEEEECSS
T ss_pred CCeEEEeCCC
Confidence 5667777653
No 197
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=26.96 E-value=3.8e+02 Score=26.01 Aligned_cols=121 Identities=14% Similarity=0.263 Sum_probs=66.8
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccc-cccCcccchhcccchhhHHHHHHHHHhhC
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWR-LSEGFNSMCKVKKMGLRFADLLDRLSLEF 339 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~-~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~ 339 (524)
|.++.+++.+.+..+.+.|++.|..+..+..... | .|. ...||. ...+|++.+.+..
T Consensus 81 ~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~-----------g-~~~~~~~~f~----------~a~~Lv~~ir~~~ 138 (310)
T 3apt_A 81 AGQSRKEVAEVLHRFVESGVENLLALRGDPPRGE-----------R-VFRPHPEGFR----------YAAELVALIRERY 138 (310)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTC-----------C-SCCCCTTSCS----------SHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCC-----------C-CCCCCCCCCC----------CHHHHHHHHHHhC
Confidence 4478889999999999999999876654432210 1 010 011221 2455666555542
Q ss_pred Cc-eEEEEec-C--CCCCCCH--HHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEE
Q 041524 340 PE-MRFRYTS-P--HPKDFPD--ELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLS 413 (524)
Q Consensus 340 ~~-~~ir~~s-~--~p~~~~~--elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~ 413 (524)
+. +.+.... + ||..-+. ++-.+.++..+|+.++.- .--++.+.+.+.++.+++. |+.
T Consensus 139 g~~f~igvA~yPE~Hp~~~~~~~d~~~Lk~Kv~aGAdf~iT-------------Q~ffD~~~~~~f~~~~r~~--Gi~-- 201 (310)
T 3apt_A 139 GDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAIT-------------QLFFNNAHYFGFLERARRA--GIG-- 201 (310)
T ss_dssp GGGSEEEEEECTTCCTTSSCHHHHHHHHHHHHHHHCSEEEE-------------CCCSCHHHHHHHHHHHHHT--TCC--
T ss_pred CCCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEe-------------cccCCHHHHHHHHHHHHHc--CCC--
Confidence 33 5555542 2 4443332 333333332237665431 1246889999999999998 643
Q ss_pred EeEEEcC
Q 041524 414 SDFICGF 420 (524)
Q Consensus 414 ~~fI~G~ 420 (524)
.-+|.|+
T Consensus 202 vPIi~GI 208 (310)
T 3apt_A 202 IPILPGI 208 (310)
T ss_dssp SCEECEE
T ss_pred CeEEEEe
Confidence 3344444
No 198
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=26.95 E-value=2.8e+02 Score=27.61 Aligned_cols=94 Identities=5% Similarity=0.019 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
....+.+...|...||++.. .+. ..+|+|++.-...... ..++...+++. .
T Consensus 10 ~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD~~mp~~d-G~ell~~lr~~------------------~ 70 (387)
T 1ny5_A 10 KVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVN-GLEILKWIKER------------------S 70 (387)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSB-HHHHHHHHHHH------------------C
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCC-HHHHHHHHHhh------------------C
Confidence 34456777888888997531 211 3689999976554332 23344444321 3
Q ss_pred CCCEEEEEcccccc-cHHHHHhhCCcceEEECCCCcccHHHHHHH
Q 041524 160 HPPKIVVLGCMAER-LKDKILDADKMVDVVCGPDAYRDLPRLLEE 203 (524)
Q Consensus 160 p~~~IvvgG~~at~-~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~ 203 (524)
|..+||+.-.+.+. ...+.++ ....||+..+-....+...+..
T Consensus 71 ~~~pvIvlT~~~~~~~~~~a~~-~Ga~dyl~KP~~~~~L~~~i~~ 114 (387)
T 1ny5_A 71 PETEVIVITGHGTIKTAVEAMK-MGAYDFLTKPCMLEEIELTINK 114 (387)
T ss_dssp TTSEEEEEEETTCHHHHHHHHT-TTCCEEEEESCCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCHHHHHHHHh-cCceEEecCCCCHHHHHHHHHH
Confidence 56665544333332 2334443 4567899888655555554444
No 199
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=26.72 E-value=76 Score=29.54 Aligned_cols=78 Identities=12% Similarity=-0.063 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcC--CCCCH-HHHHHHH
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGF--CGETE-EEHADTL 432 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~--PgET~-ed~~~tl 432 (524)
++.++.++++ |+..|.+......+ . . +..++.+.+++. |+.+.+..-.++ +.++. +.+++.+
T Consensus 26 ~~~l~~a~~~--G~~~vEl~~~~~~~---------~-~-~~~~~~~~l~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~i 90 (264)
T 1yx1_A 26 ASFLPLLAMA--GAQRVELREELFAG---------P-P-DTEALTAAIQLQ--GLECVFSSPLELWREDGQLNPELEPTL 90 (264)
T ss_dssp GGGHHHHHHH--TCSEEEEEGGGCSS---------C-C-CHHHHHHHHHHT--TCEEEEEEEEEEECTTSSBCTTHHHHH
T ss_pred HHHHHHHHHc--CCCEEEEEHHhcCC---------C-H-HHHHHHHHHHHc--CCEEEEecchhhcCCchhHHHHHHHHH
Confidence 4577777777 88888776431111 1 1 344455556666 776543221122 12244 7788888
Q ss_pred HHHHHcCCCeEEEEee
Q 041524 433 TLMKAVGYDMAYMFAY 448 (524)
Q Consensus 433 ~~l~~l~~d~~~i~~~ 448 (524)
+++.+++...+.+.+-
T Consensus 91 ~~A~~lGa~~v~~~~g 106 (264)
T 1yx1_A 91 RRAEACGAGWLKVSLG 106 (264)
T ss_dssp HHHHHTTCSEEEEEEE
T ss_pred HHHHHcCCCEEEEecC
Confidence 8888888887776543
No 200
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=26.25 E-value=2.5e+02 Score=22.37 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCeec--cCCC--------------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEV--INVP--------------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVA 152 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~--~~~~--------------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~ 152 (524)
|....+.+...|...||..+ +.+. ..+|+|++.-......+ .++.+.+++.
T Consensus 11 ~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G-~~~~~~lr~~------------ 77 (133)
T 2r25_B 11 NHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDG-LLSTKMIRRD------------ 77 (133)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCH-HHHHHHHHHH------------
T ss_pred CHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCh-HHHHHHHHhh------------
Confidence 34456677778888887421 1221 35799999655433322 2344444321
Q ss_pred ccccccCCCC-EEEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 153 TGRSQSKHPP-KIVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 153 ~~~~~~~p~~-~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
..+.. .|++.|........+.++ ....||+.-+-....+.+.++.+
T Consensus 78 -----~~~~~~ii~lt~~~~~~~~~~~~~-~ga~~~l~KP~~~~~L~~~l~~~ 124 (133)
T 2r25_B 78 -----LGYTSPIVALTAFADDSNIKECLE-SGMNGFLSKPIKRPKLKTILTEF 124 (133)
T ss_dssp -----SCCCSCEEEEESCCSHHHHHHHHH-TTCSEEEESSCCHHHHHHHHHHH
T ss_pred -----cCCCCCEEEEECCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHH
Confidence 12333 445555433323344444 45678998886666666666554
No 201
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=26.17 E-value=1.2e+02 Score=27.62 Aligned_cols=70 Identities=10% Similarity=0.019 Sum_probs=49.1
Q ss_pred EecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCC
Q 041524 82 ETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHP 161 (524)
Q Consensus 82 ~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 161 (524)
..++-..|-...+.+...|.... .++..++=++.|||.+=.-.+...+++.|+.+ ..+
T Consensus 30 i~l~G~I~~~~a~~i~~~L~~~~----~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~------------------~~p 87 (208)
T 2cby_A 30 IFLGSEVNDEIANRLCAQILLLA----AEDASKDISLYINSPGGSISAGMAIYDTMVLA------------------PCD 87 (208)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHH----HHCSSSCEEEEEEECCBCHHHHHHHHHHHHHC------------------SSC
T ss_pred EEEcCEECHHHHHHHHHHHHHHH----hCCCCCCEEEEEECCCCCHHHHHHHHHHHHhc------------------CCC
Confidence 44677888888888888886432 12234555788999887667777888888764 245
Q ss_pred CEEEEEcccccc
Q 041524 162 PKIVVLGCMAER 173 (524)
Q Consensus 162 ~~IvvgG~~at~ 173 (524)
+.++++|..|+.
T Consensus 88 V~~~v~g~AaS~ 99 (208)
T 2cby_A 88 IATYAMGMAASM 99 (208)
T ss_dssp EEEEEEEEEETH
T ss_pred EEEEECcEeHHH
Confidence 677788877775
No 202
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=26.07 E-value=87 Score=32.94 Aligned_cols=31 Identities=6% Similarity=-0.002 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC
Q 041524 391 YTREAYLDLVQKIRQIIPDVGLSSDFICGFCGE 423 (524)
Q Consensus 391 ~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE 423 (524)
.+.+++.++|+.+++. ||.|..|+++..-+.
T Consensus 90 Gt~~dfk~Lv~~aH~~--GI~VilD~V~NHt~~ 120 (527)
T 1gcy_A 90 GSDAQLRQAASALGGA--GVKVLYDVVPNHMNR 120 (527)
T ss_dssp CCHHHHHHHHHHHHHT--TCEEEEEECCSBCCT
T ss_pred CCHHHHHHHHHHHHHC--CCEEEEEEeecCcCC
Confidence 3799999999999999 999999999987554
No 203
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=25.83 E-value=95 Score=28.99 Aligned_cols=86 Identities=14% Similarity=0.010 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCCCeec-cCC-----------CCCCcEEEEeeccCcc---hHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 93 MEIVLSIMKNAGYSEV-INV-----------PENAEVIFINTCAIRD---YAEHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~-~~~-----------~~~aDvv~intc~v~~---~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
...+....++.|...- .-+ .+.+|.|++.|--.-. .......+.+++++.+.. +
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~-----------~ 163 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRE-----------R 163 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHh-----------c
Confidence 5566677788886521 111 1468999985432211 112234566666644432 1
Q ss_pred cCCCCEEEEEcccccccHHHHHhhCCcceEEECC
Q 041524 158 SKHPPKIVVLGCMAERLKDKILDADKMVDVVCGP 191 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~g 191 (524)
...+..|.|.|-.-...-.++.+. ++|++|.|
T Consensus 164 ~~~~~~I~VdGGI~~~~~~~~~~a--GAd~~V~G 195 (231)
T 3ctl_A 164 EGLEYEIEVDGSCNQATYEKLMAA--GADVFIVG 195 (231)
T ss_dssp HTCCCEEEEESCCSTTTHHHHHHH--TCCEEEEC
T ss_pred cCCCceEEEECCcCHHHHHHHHHc--CCCEEEEc
Confidence 124566776554333344555543 68999998
No 204
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=25.79 E-value=1.7e+02 Score=23.36 Aligned_cols=103 Identities=10% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHCCCeecc-CC---------C-CCCcEEEEeeccCcchHHHHHHHHHHHHHHh
Q 041524 75 SQGRIYQETYGCQMNVNDMEIVLSIMKNAGYSEVI-NV---------P-ENAEVIFINTCAIRDYAEHKVWQRLNYFWFL 143 (524)
Q Consensus 75 ~~~~~~~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~-~~---------~-~~aDvv~intc~v~~~a~~~~~~~l~~~~~~ 143 (524)
+..++.++ -=|....+.+...|.+.||++.. .+ . ..+|+|++........ . ++.++++
T Consensus 14 ~~~~iliv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~-g---~~~~~~l--- 82 (138)
T 2b4a_A 14 QPFRVTLV----EDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLS-I---FSLLDIV--- 82 (138)
T ss_dssp CCCEEEEE----CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSC-H---HHHHHHH---
T ss_pred CCCeEEEE----CCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCC-H---HHHHHHH---
Confidence 34455553 23556678888999999997521 11 2 4689999965443222 2 2334433
Q ss_pred hhhhhhcccccccccCCCCEEEEEc-ccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 144 KREWKKNVATGRSQSKHPPKIVVLG-CMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 144 ~~~~~~~~~~~~~~~~p~~~IvvgG-~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
+ +..+..+|++.. ........ +.. ..|++..+-....+...+..+
T Consensus 83 ~------------~~~~~~~ii~ls~~~~~~~~~---~~~-~~~~l~KP~~~~~L~~~i~~~ 128 (138)
T 2b4a_A 83 K------------EQTKQPSVLILTTGRHELIES---SEH-NLSYLQKPFAISELRAAIDYH 128 (138)
T ss_dssp T------------TSSSCCEEEEEESCC--CCCC---SSS-CEEEEESSCCHHHHHHHHHHT
T ss_pred H------------hhCCCCCEEEEECCCCCHHHH---HHH-HHheeeCCCCHHHHHHHHHHH
Confidence 1 123566666543 33332112 222 567787775544444444443
No 205
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=25.78 E-value=1.1e+02 Score=30.85 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=32.6
Q ss_pred CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECC
Q 041524 113 ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGP 191 (524)
Q Consensus 113 ~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~g 191 (524)
..+|+|.|+|..-.. ....+.++++ + +..|+.+|++|.+........+.+ -++|+|+.|
T Consensus 119 aGvd~I~idta~G~~---~~~~~~I~~i---k------------~~~p~v~Vi~G~v~t~e~A~~a~~--aGAD~I~vG 177 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHS---EGVLQRIRET---R------------AAYPHLEIIGGNVATAEGARALIE--AGVSAVKVG 177 (366)
T ss_dssp TTCSEEEEECSCTTS---HHHHHHHHHH---H------------HHCTTCEEEEEEECSHHHHHHHHH--HTCSEEEEC
T ss_pred CCCCEEEEeCCCCCC---HHHHHHHHHH---H------------HhcCCCceEeeeeCCHHHHHHHHH--cCCCEEEEe
Confidence 478999998653222 2334444444 1 224677777765543323333433 368988874
No 206
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3
Probab=24.97 E-value=1.4e+02 Score=30.36 Aligned_cols=61 Identities=7% Similarity=0.019 Sum_probs=41.8
Q ss_pred CCHHHHHHHHcCCCCcceeecCcC--CcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE
Q 041524 354 FPDELLYIMRDRPNVCKYIHLPAQ--TGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC 418 (524)
Q Consensus 354 ~~~elL~~l~~~~~G~~~i~igiE--Sgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~ 418 (524)
++++.++.|+++ |++.|-|++. ...+.--.-...+...+.+.++|+.++++ |+.+..|+-.
T Consensus 74 ~te~d~~~i~~~--G~N~VRipi~~~~~~~~~~~py~~~~~l~~ld~vv~~a~~~--Gi~VilDlH~ 136 (408)
T 1h4p_A 74 YQEQDFANIASQ--GFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNN--SLKVWVDLHG 136 (408)
T ss_dssp SCHHHHHHHHHT--TCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHT--TCEEEEEEEE
T ss_pred CCHHHHHHHHHC--CCCEEEccCCHHHcccCCCCCCccccHHHHHHHHHHHHHHC--CCEEEEECCC
Confidence 578899999998 9999888773 11110000001112567889999999999 9998888764
No 207
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=24.96 E-value=1.2e+02 Score=28.02 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=49.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCC
Q 041524 81 QETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKH 160 (524)
Q Consensus 81 ~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 160 (524)
++.++...+-..++.+.+.|.... .+++ ++=++.|||.+=.-.+...+++.|+.+ ..
T Consensus 41 iI~l~G~I~~~~a~~i~~~L~~l~----~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~~------------------~~ 97 (215)
T 2f6i_A 41 IIYLTDEINKKTADELISQLLYLD----NINH-NDIKIYINSPGGSINEGLAILDIFNYI------------------KS 97 (215)
T ss_dssp EEEECSCBCHHHHHHHHHHHHHHH----HHCC-SCEEEEEEECCBCHHHHHHHHHHHHHS------------------SS
T ss_pred EEEEccEECHHHHHHHHHHHHHHH----hCCC-CcEEEEEECCCCCHHHHHHHHHHHHhc------------------CC
Confidence 345678888888888888886432 2233 566788999887767777888888764 24
Q ss_pred CCEEEEEcccccc
Q 041524 161 PPKIVVLGCMAER 173 (524)
Q Consensus 161 ~~~IvvgG~~at~ 173 (524)
++.++++|..|+.
T Consensus 98 pV~t~v~g~AAS~ 110 (215)
T 2f6i_A 98 DIQTISFGLVASM 110 (215)
T ss_dssp CEEEEEEEEECHH
T ss_pred CEEEEEeeEhHhH
Confidence 5677778866664
No 208
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=24.77 E-value=1.9e+02 Score=27.51 Aligned_cols=76 Identities=12% Similarity=0.006 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHhhCCceEEEEecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHh------hhCCCCCHHHHHHH
Q 041524 326 LRFADLLDRLSLEFPEMRFRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLE------RMRRGYTREAYLDL 399 (524)
Q Consensus 326 ~~~~~Ll~~l~~~~~~~~ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~------~m~R~~t~e~~~~~ 399 (524)
..+..|...+.-..+..||=+.. ....++++-++|++. |..+.||++.+- +.++ .-.+.-...+-..+
T Consensus 19 a~LtRLa~TL~~Vp~L~WIVVEd--~~~~t~~va~lL~~s--gl~y~HL~~~~p--~~~~~~~~~~~~~~~rg~~qRn~A 92 (253)
T 1v84_A 19 AELTRMANTLLHVPNLHWLVVED--APRRTPLTARLLRDT--GLNYTHLHVETP--RNYKLRGDARDPRIPRGTMQRNLA 92 (253)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEES--SSSCCHHHHHHHHHH--CCEEEEEECCCC--HHHHCC-------CCTTHHHHHHH
T ss_pred HHHHHHhhhhccCCceEEEEEeC--CCCCCHHHHHHHHHc--CCceEEeecCCC--ccccccccccCccccchHHHHHHH
Confidence 34555666665555555775542 234589999999999 999999998752 2222 11223356778888
Q ss_pred HHHHHHhC
Q 041524 400 VQKIRQII 407 (524)
Q Consensus 400 v~~ir~~~ 407 (524)
++.+|+..
T Consensus 93 L~~Ir~~~ 100 (253)
T 1v84_A 93 LRWLRETF 100 (253)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99999853
No 209
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=24.58 E-value=2.7e+02 Score=22.21 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHC-CCeec--cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 89 NVNDMEIVLSIMKNA-GYSEV--INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 89 N~~d~e~i~~~L~~~-Gy~~~--~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
|....+.+...|.+. ||+.+ +.+. ..+|+|++........ . ++.++++ +
T Consensus 18 ~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~-g---~~~~~~l---~------------ 78 (143)
T 2qv0_A 18 EFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLD-G---VLLAQNI---S------------ 78 (143)
T ss_dssp CHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSC-H---HHHHHHH---T------------
T ss_pred CHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCC-H---HHHHHHH---H------------
Confidence 455667788888775 78742 1221 3589999965443222 2 2333333 1
Q ss_pred ccCCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHh
Q 041524 157 QSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVD 205 (524)
Q Consensus 157 ~~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~ 205 (524)
+..+..+|+ +++. .. .....++ ....|++..+-....|...+..+.
T Consensus 79 ~~~~~~~ii~~s~~-~~-~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~~ 125 (143)
T 2qv0_A 79 QFAHKPFIVFITAW-KE-HAVEAFE-LEAFDYILKPYQESRIINMLQKLT 125 (143)
T ss_dssp TSTTCCEEEEEESC-CT-THHHHHH-TTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ccCCCceEEEEeCC-HH-HHHHHHh-CCcceEEeCCCCHHHHHHHHHHHH
Confidence 113455444 5553 33 3344444 455788888766666666665543
No 210
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=24.23 E-value=5.1e+02 Score=26.97 Aligned_cols=129 Identities=14% Similarity=0.183 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEEE
Q 041524 267 SIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFRY 346 (524)
Q Consensus 267 ~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir~ 346 (524)
+..+.++.+.+.|+.-|.+...+ |. ...+.++++++.+..+...+-.
T Consensus 256 d~~era~aLveaGvd~I~Id~a~----------------g~-----------------~~~v~~~i~~i~~~~~~~~vi~ 302 (511)
T 3usb_A 256 DAMTRIDALVKASVDAIVLDTAH----------------GH-----------------SQGVIDKVKEVRAKYPSLNIIA 302 (511)
T ss_dssp THHHHHHHHHHTTCSEEEEECSC----------------TT-----------------SHHHHHHHHHHHHHCTTSEEEE
T ss_pred chHHHHHHHHhhccceEEecccc----------------cc-----------------hhhhhhHHHHHHHhCCCceEEe
Confidence 45778889999999988776432 11 1347788888888766543323
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCH---HHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC
Q 041524 347 TSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNS---AVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGE 423 (524)
Q Consensus 347 ~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~---~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE 423 (524)
... .+.+..+.+.++ |+..|.+|+..|+- ....-.+. -+.+.+.++.+.+++. ++.+.++- | =-
T Consensus 303 g~v----~t~e~a~~~~~a--Gad~i~vg~g~gsi~~~~~~~g~g~-p~~~~l~~v~~~~~~~--~iPVIa~G--G--I~ 369 (511)
T 3usb_A 303 GNV----ATAEATKALIEA--GANVVKVGIGPGSICTTRVVAGVGV-PQLTAVYDCATEARKH--GIPVIADG--G--IK 369 (511)
T ss_dssp EEE----CSHHHHHHHHHH--TCSEEEECSSCSTTCCHHHHHCCCC-CHHHHHHHHHHHHHTT--TCCEEEES--C--CC
T ss_pred eee----ccHHHHHHHHHh--CCCEEEECCCCccccccccccCCCC-CcHHHHHHHHHHHHhC--CCcEEEeC--C--CC
Confidence 221 366778888888 99999998887762 22222211 2345555666666665 55433321 2 24
Q ss_pred CHHHHHHHHHHHHHcCCCeEEE
Q 041524 424 TEEEHADTLTLMKAVGYDMAYM 445 (524)
Q Consensus 424 T~ed~~~tl~~l~~l~~d~~~i 445 (524)
|.+|+.+.+. ++.+.+.+
T Consensus 370 ~~~di~kala----~GA~~V~v 387 (511)
T 3usb_A 370 YSGDMVKALA----AGAHVVML 387 (511)
T ss_dssp SHHHHHHHHH----TTCSEEEE
T ss_pred CHHHHHHHHH----hCchhhee
Confidence 7788777654 56676554
No 211
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=23.99 E-value=4.2e+02 Score=24.24 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEE-eEEEc-C----------CC-
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSS-DFICG-F----------CG- 422 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~-~fI~G-~----------Pg- 422 (524)
++.++.+++. |+..|.+.... ..+ ..++-+.+++. |+.+.+ ..-.+ + |.
T Consensus 26 ~~~l~~~~~~--G~~~vEl~~~~-----------~~~---~~~~~~~l~~~--gl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (269)
T 3ngf_A 26 LERFRLAAEA--GFGGVEFLFPY-----------DFD---ADVIARELKQH--NLTQVLFNMPPGDWAAGERGMAAISGR 87 (269)
T ss_dssp HHHHHHHHHT--TCSEEECSCCT-----------TSC---HHHHHHHHHHT--TCEEEEEECCCSCTTTTCCBCTTCTTC
T ss_pred HHHHHHHHHc--CCCEEEecCCc-----------cCC---HHHHHHHHHHc--CCcEEEEecCCCccccCCCCcCCCccH
Confidence 7899999999 99999987521 223 44555566777 887754 21111 1 11
Q ss_pred --CCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 423 --ETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 423 --ET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
+..+.+++.++++..++...+.+.
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~ 113 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAM 113 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 134678889999999999887653
No 212
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=23.80 E-value=2.2e+02 Score=22.75 Aligned_cols=102 Identities=8% Similarity=0.053 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHCCCeec-cCC---------CCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 041524 89 NVNDMEIVLSIMKNAGYSEV-INV---------PENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQS 158 (524)
Q Consensus 89 N~~d~e~i~~~L~~~Gy~~~-~~~---------~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (524)
|....+.+...|...||.+. +.+ ...+|+|++........ ..++.+.+++. .. ...
T Consensus 19 ~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~-g~~~~~~l~~~---~~----------~~~ 84 (140)
T 3c97_A 19 NDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMD-GLEAVSEIRNY---ER----------THN 84 (140)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSC-HHHHHHHHHHH---HH----------HHT
T ss_pred CHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCc-HHHHHHHHHhh---hh----------hcC
Confidence 34456667777777787642 121 13689999965443322 23344444432 00 001
Q ss_pred CCCCE-EEEEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcCC
Q 041524 159 KHPPK-IVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQ 208 (524)
Q Consensus 159 ~p~~~-IvvgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g~ 208 (524)
.+..+ |++.+........ .....|++..+-....+.+.+..+..|.
T Consensus 85 ~~~~~ii~~s~~~~~~~~~----~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 85 TKRASIIAITADTIDDDRP----GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCCCCEEEESSCCSCCCC----CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CCceEEEEEeCccchhHHH----hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 23333 4445532221111 2344688888877777777776665543
No 213
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=23.62 E-value=87 Score=29.46 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=36.9
Q ss_pred CCCcEEEEeeccC---cchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEE
Q 041524 113 ENAEVIFINTCAI---RDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVC 189 (524)
Q Consensus 113 ~~aDvv~intc~v---~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv 189 (524)
+.+|.|++.|-.. .........+.+++++.+.. ++..+..|.|.|-.-.....++.+-..++|.+|
T Consensus 147 ~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~-----------~~~~~~~I~vdGGI~~~~~~~~~~~~aGad~~V 215 (237)
T 3cu2_A 147 DQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLG-----------NRRVEKLINIDGSMTLELAKYFKQGTHQIDWLV 215 (237)
T ss_dssp TTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHG-----------GGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEE
T ss_pred hcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHH-----------hcCCCceEEEECCcCHHHHHHHHHhCCCCcEEE
Confidence 4799998854332 12223445666666644332 112356676655433333444443113689988
Q ss_pred CCCC
Q 041524 190 GPDA 193 (524)
Q Consensus 190 ~geg 193 (524)
.|-+
T Consensus 216 vGSa 219 (237)
T 3cu2_A 216 SGSA 219 (237)
T ss_dssp ECGG
T ss_pred EeeH
Confidence 8855
No 214
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=23.39 E-value=1.3e+02 Score=27.71 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=46.0
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCCCCE
Q 041524 84 YGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKHPPK 163 (524)
Q Consensus 84 ~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 163 (524)
++.++|-...+.+.+.|.... .++..++=++.|||-.=.-.+...+++.++.+ .+++.
T Consensus 50 l~g~I~~~~a~~i~~~L~~l~----~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~~------------------~~pV~ 107 (218)
T 1y7o_A 50 LTGPVEDNMANSVIAQLLFLD----AQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFI------------------KADVQ 107 (218)
T ss_dssp EESCBCHHHHHHHHHHHHHHH----HHCTTSCEEEEEEECCBCHHHHHHHHHHHHHS------------------SSCEE
T ss_pred EeCEECHHHHHHHHHHHHHHH----hcCCCCCEEEEEECcCCCHHHHHHHHHHHHhc------------------CCCEE
Confidence 567899888888888886532 22334555678898765555666788877654 24566
Q ss_pred EEEEcccccc
Q 041524 164 IVVLGCMAER 173 (524)
Q Consensus 164 IvvgG~~at~ 173 (524)
++++|.-++.
T Consensus 108 t~v~G~AaS~ 117 (218)
T 1y7o_A 108 TIVMGMAASM 117 (218)
T ss_dssp EEEEEEEETH
T ss_pred EEEccEeHHH
Confidence 7778876665
No 215
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=23.35 E-value=2.8e+02 Score=27.46 Aligned_cols=94 Identities=9% Similarity=0.035 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHCCCeec-cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCC
Q 041524 91 NDMEIVLSIMKNAGYSEV-INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKH 160 (524)
Q Consensus 91 ~d~e~i~~~L~~~Gy~~~-~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 160 (524)
...+.+...|.+.||++. +.+. ..+|+|++.-...... ..++.+.+++. .|
T Consensus 11 ~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllDi~mP~~d-G~ell~~lr~~------------------~~ 71 (368)
T 3dzd_A 11 SITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGD-GVNFIDFIKEN------------------SP 71 (368)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEESEETTEE-TTTHHHHHHHH------------------CT
T ss_pred HHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCC-HHHHHHHHHhh------------------CC
Confidence 445677888889999752 1221 3689999865443322 22344444332 35
Q ss_pred CCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHH
Q 041524 161 PPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEV 204 (524)
Q Consensus 161 ~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~ 204 (524)
..+|| +.|........+.++. ...||+.-+-....+...+..+
T Consensus 72 ~~pvI~lT~~~~~~~~~~a~~~-Ga~~yl~KP~~~~~L~~~i~~~ 115 (368)
T 3dzd_A 72 DSVVIVITGHGSVDTAVKAIKK-GAYEFLEKPFSVERFLLTIKHA 115 (368)
T ss_dssp TCEEEEEECSSCCHHHHHHHHH-TCCEEEESSCCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHhc-CcceEEeCCCCHHHHHHHHHHH
Confidence 56555 4554333333445543 5678999886655555555443
No 216
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}
Probab=23.28 E-value=6.8e+02 Score=26.44 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHHHCC-----CcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhh
Q 041524 264 PVESIVKEVDELWKEG-----VKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLE 338 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G-----~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~ 338 (524)
+.+.+++.++.+.+.| +.-|-+-++..-- |... . ...+--.++..+++.+.+.
T Consensus 247 ~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRP-------------Ga~~-v--------s~eEEl~RvvpvI~~i~~~ 304 (545)
T 2bmb_A 247 DIESQLNDIIKLCKDALYLHESVIIDVGGCSTRP-------------NSIQ-A--------SEEEEIRRSIPLIKAIRES 304 (545)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCST-------------TCCC-C--------CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCC-------------CCCC-C--------CHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999 7766666544311 1100 0 0011123455566666531
Q ss_pred ----CCceEEEEecC-------------------CCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCC---
Q 041524 339 ----FPEMRFRYTSP-------------------HPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYT--- 392 (524)
Q Consensus 339 ----~~~~~ir~~s~-------------------~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t--- 392 (524)
.....+.+.+. .....+++++++++++| ||..+-+-.+ |.++.....- .|.
T Consensus 305 ~~~~~~~vpISIDT~~a~VaeaAl~aGadIINDVsg~~~d~~m~~vva~~~-~~~vVlmH~r-G~p~tm~~~~-~y~~~~ 381 (545)
T 2bmb_A 305 TELPQDKVILSIDTYRSNVAKEAIKVGVDIINDISGGLFDSNMFAVIAENP-EICYILSHTR-GDISTMNRLA-HYENFA 381 (545)
T ss_dssp SSSCGGGEEEEEECCCHHHHHHHHHTTCCEEEETTTTSSCTTHHHHHHTCT-TSEEEEECCC-SCTTTGGGCC-CCSSCT
T ss_pred ccccCCCCeEEEeCCcHHHHHHHHHcCCCEEEeCCCCcCChHHHHHHHHhC-CCeEEEECCC-CCCCCccccc-cccccc
Confidence 12344555542 22224677888888764 5666555332 2222211100 011
Q ss_pred -------------------------------HHHHHHHHHHHHHhCCCcE---EEEeEEEcCCCCCHHHHHHHHHHHHHc
Q 041524 393 -------------------------------REAYLDLVQKIRQIIPDVG---LSSDFICGFCGETEEEHADTLTLMKAV 438 (524)
Q Consensus 393 -------------------------------~e~~~~~v~~ir~~~pgi~---i~~~fI~G~PgET~ed~~~tl~~l~~l 438 (524)
.+.+.+.++.+.++ ||. |..|=-+|| +-|.++-.++++-+..+
T Consensus 382 ~~~~~~~e~~~~~~~~~~~~~~~~~~vv~~v~~~l~~~i~~a~~~--GI~~~~IilDPGiGF-~Kt~~~nl~lL~~l~~l 458 (545)
T 2bmb_A 382 LGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGERYIKAIDN--GVKRWQILIDPGLGF-AKTWKQNLQIIRHIPIL 458 (545)
T ss_dssp TTTTEEEEEETTEEGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHT--TCCGGGEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred cccccchhccccccccccccccccchHHHHHHHHHHHHHHHHHHc--CCCHHHEEEeCCCCc-ccChHHHHHHHHHHHHH
Confidence 13345677788888 885 888988899 77877666666666655
Q ss_pred C
Q 041524 439 G 439 (524)
Q Consensus 439 ~ 439 (524)
+
T Consensus 459 ~ 459 (545)
T 2bmb_A 459 K 459 (545)
T ss_dssp T
T ss_pred H
Confidence 4
No 217
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=22.94 E-value=1.9e+02 Score=26.33 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceE
Q 041524 264 PVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMR 343 (524)
Q Consensus 264 ~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 343 (524)
..++.++.++.+.+.|+..+.+.+-+...+ + .....++++++.+... ..
T Consensus 31 ~~~~~~~~a~~~~~~G~d~i~v~~~~~~~~------------~------------------~~~~~~~i~~i~~~~~-ip 79 (253)
T 1h5y_A 31 EVGDPVEMAVRYEEEGADEIAILDITAAPE------------G------------------RATFIDSVKRVAEAVS-IP 79 (253)
T ss_dssp EEECHHHHHHHHHHTTCSCEEEEECCCCTT------------T------------------HHHHHHHHHHHHHHCS-SC
T ss_pred ecccHHHHHHHHHHcCCCEEEEEeCCcccc------------C------------------CcccHHHHHHHHHhcC-CC
Confidence 456778888888888999998876332111 0 1123455666665432 22
Q ss_pred EEEecCCCCCCCHHHHHHHHcCCCCcceeecCcC
Q 041524 344 FRYTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQ 377 (524)
Q Consensus 344 ir~~s~~p~~~~~elL~~l~~~~~G~~~i~igiE 377 (524)
+-.. -...+.+.++.+.++ |+..+++|.+
T Consensus 80 vi~~---g~i~~~~~~~~~~~~--Gad~V~i~~~ 108 (253)
T 1h5y_A 80 VLVG---GGVRSLEDATTLFRA--GADKVSVNTA 108 (253)
T ss_dssp EEEE---SSCCSHHHHHHHHHH--TCSEEEESHH
T ss_pred EEEE---CCCCCHHHHHHHHHc--CCCEEEEChH
Confidence 2221 122345666777777 9999999854
No 218
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=22.86 E-value=1.4e+02 Score=28.92 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=49.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCC
Q 041524 81 QETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKH 160 (524)
Q Consensus 81 ~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 160 (524)
++.++...+-...+.+.+.|.... .+++.++=++.|||-+=.-.+...+++.|+.+ .+
T Consensus 84 II~l~G~I~d~~a~~iiaqL~~l~----~ed~~k~I~L~INSPGGsV~ag~aIyd~I~~~------------------k~ 141 (277)
T 1tg6_A 84 IVCVMGPIDDSVASLVIAQLLFLQ----SESNKKPIHMYINSPGGVVTAGLAIYDTMQYI------------------LN 141 (277)
T ss_dssp EEEEESSBCHHHHHHHHHHHHHHH----HHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS------------------CS
T ss_pred EEEEcCEECHHHHHHHHHHHHHHH----hcCCCCCEEEEEECCCCCHHHHHHHHHHHHhc------------------CC
Confidence 445667888877888888776431 22334555688999887777778889888765 25
Q ss_pred CCEEEEEcccccc
Q 041524 161 PPKIVVLGCMAER 173 (524)
Q Consensus 161 ~~~IvvgG~~at~ 173 (524)
++.++++|..|+.
T Consensus 142 pV~t~v~G~AASa 154 (277)
T 1tg6_A 142 PICTWCVGQAASM 154 (277)
T ss_dssp CEEEEEEEEEETH
T ss_pred CEEEEEccEeHHH
Confidence 6777888877775
No 219
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=22.84 E-value=2e+02 Score=26.52 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=14.2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEEe
Q 041524 261 RSRPVESIVKEVDELWKEGVKEVTLLG 287 (524)
Q Consensus 261 Rsr~~e~Iv~Ei~~l~~~G~kei~l~d 287 (524)
+..|+++.++.++ +.|++.|.+..
T Consensus 21 ~~~~~~~~l~~~~---~~G~~~vEl~~ 44 (269)
T 3ngf_A 21 NEVPFLERFRLAA---EAGFGGVEFLF 44 (269)
T ss_dssp TTSCHHHHHHHHH---HTTCSEEECSC
T ss_pred ccCCHHHHHHHHH---HcCCCEEEecC
Confidence 3456666555544 44888777653
No 220
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=22.57 E-value=2.3e+02 Score=26.29 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHCCCeeccCCC----------CCCcEEEEeeccCc--------chH--HHHHHHHHHHHHHhhhhh
Q 041524 88 MNVNDMEIVLSIMKNAGYSEVINVP----------ENAEVIFINTCAIR--------DYA--EHKVWQRLNYFWFLKREW 147 (524)
Q Consensus 88 ~N~~d~e~i~~~L~~~Gy~~~~~~~----------~~aDvv~intc~v~--------~~a--~~~~~~~l~~~~~~~~~~ 147 (524)
....+.........+.|.+.++.-. -.+++|.+|----. ... .+++.+.++.+
T Consensus 98 ~~~~e~~~k~~~A~~~GL~~ivcVge~~e~~~~~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~------- 170 (226)
T 1w0m_A 98 LKLNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRH------- 170 (226)
T ss_dssp CBHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCEEEEcChhhhccCCCCCCCChhHHHHHHHHHHhc-------
Confidence 3456677777777889987643211 25789999765332 111 23344444332
Q ss_pred hhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCCc---ccHHHHHHHH
Q 041524 148 KKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDAY---RDLPRLLEEV 204 (524)
Q Consensus 148 ~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~gege---~~l~~Ll~~~ 204 (524)
.++.+|+.||..-+..-.+++.. +.+|-+..|++- .++.++++.+
T Consensus 171 -----------~~~~~ilyggsV~~~n~~~~~~~-~giDG~LVG~a~l~a~~~~~~i~~l 218 (226)
T 1w0m_A 171 -----------FPEVSVITGAGIESGDDVAAALR-LGTRGVLLASAAVKAKDPYAKIVEL 218 (226)
T ss_dssp -----------CTTSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHTCSSHHHHHHHH
T ss_pred -----------cCCCEEEEeCCCCcHHHHHHHHh-CCCCEEEECHHHHCCcCHHHHHHHH
Confidence 24578888887776666666654 789999998763 3344444443
No 221
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=22.45 E-value=1.9e+02 Score=27.73 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=34.0
Q ss_pred cEEEEecCCCCCHHH-HHHHHHHHHHCC-Ceecc-C-------------CCCCCcEEEEeeccC
Q 041524 78 RIYQETYGCQMNVND-MEIVLSIMKNAG-YSEVI-N-------------VPENAEVIFINTCAI 125 (524)
Q Consensus 78 ~~~~~t~GC~~N~~d-~e~i~~~L~~~G-y~~~~-~-------------~~~~aDvv~intc~v 125 (524)
||.+.+=+|.++... ...|...|++.| |++.+ . ...++|+|+++++.-
T Consensus 6 kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~ 69 (281)
T 4e5v_A 6 KTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGD 69 (281)
T ss_dssp EEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSS
T ss_pred EEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCC
Confidence 577777778887433 377888899898 87632 2 235799999988643
No 222
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=22.23 E-value=1.7e+02 Score=26.72 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=50.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccCC
Q 041524 81 QETYGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSKH 160 (524)
Q Consensus 81 ~~t~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 160 (524)
++.+|-+.|-...+.+.+.|.... .+++.++=++.|||.+=.-.+...+++.++.+ .+
T Consensus 29 iI~l~g~I~~~~a~~i~~~L~~l~----~~~~~~~I~l~InSPGG~v~~~~~I~~~i~~~------------------~~ 86 (203)
T 3qwd_A 29 IIMLGSQIDDNVANSIVSQLLFLQ----AQDSEKDIYLYINSPGGSVTAGFAIYDTIQHI------------------KP 86 (203)
T ss_dssp EEEECSCBCHHHHHHHHHHHHHHH----HHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS------------------SS
T ss_pred EEEEcCEECHHHHHHHHHHHHHHH----hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh------------------cC
Confidence 445678899888999988887542 22334556788999886667777788887754 24
Q ss_pred CCEEEEEcccccc
Q 041524 161 PPKIVVLGCMAER 173 (524)
Q Consensus 161 ~~~IvvgG~~at~ 173 (524)
++.+++.|..++.
T Consensus 87 ~V~t~~~G~AaSa 99 (203)
T 3qwd_A 87 DVQTICIGMAASM 99 (203)
T ss_dssp CEEEEEEEEEETH
T ss_pred CcEEEEeeeehhH
Confidence 5667777876664
No 223
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=22.21 E-value=1.1e+02 Score=28.69 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEE----eEEEcCCCCCHHHHHHHHHHHHH
Q 041524 390 GYTREAYLDLVQKIRQIIPDVGLSS----DFICGFCGETEEEHADTLTLMKA 437 (524)
Q Consensus 390 ~~t~e~~~~~v~~ir~~~pgi~i~~----~fI~G~PgET~ed~~~tl~~l~~ 437 (524)
..|.++++++++.++...+|+.+.. .+|---|+|-..|....++++..
T Consensus 114 ~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D~~~vLela~~ 165 (234)
T 3cuq_A 114 DVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEK 165 (234)
T ss_dssp SCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchHHHHHHHHHHh
Confidence 3689999999999999888887643 58888899999999999888863
No 224
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=22.19 E-value=8.1e+02 Score=26.93 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=74.4
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHcCCCC-cceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCC-CcEEEEeEEE
Q 041524 341 EMRFRYTSPHPKDFPDELLYIMRDRPNV-CKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIP-DVGLSSDFIC 418 (524)
Q Consensus 341 ~~~ir~~s~~p~~~~~elL~~l~~~~~G-~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~p-gi~i~~~fI~ 418 (524)
...+.+.+.. ..++++.++.|.+. + +..+++=+-++. + + ++.+++.+| |-.+...+|-
T Consensus 235 ~~~i~lhtc~-G~~~~~~~~~l~~l--~~vd~l~lD~v~~~-~------------~----l~~l~~~l~~~k~L~lGvVd 294 (765)
T 1u1j_A 235 GLNVLVETYF-ADIPAEAYKTLTSL--KGVTAFGFDLVRGT-K------------T----LDLVKAGFPEGKYLFAGVVD 294 (765)
T ss_dssp SSEEEEECCS-SCCCHHHHHHHTTC--TTCCEEEEESSSCT-T------------H----HHHHHHCCCSSCEEEEEEEC
T ss_pred CCeEEEEeCC-CCcchHHHHHHHcC--CCCcEEEEEecCCc-c------------c----HHHHHHhcCCCCEEEEEeeC
Confidence 3455444322 24454688888887 6 888887544332 1 1 133334344 5678888887
Q ss_pred cC--CCCCHHHHHHHHHHHH-HcCCCeEEEEeeecCCCChhcccCCCCCCHHHH------HHHHHHHHHHHHHHH
Q 041524 419 GF--CGETEEEHADTLTLMK-AVGYDMAYMFAYSMRERTHAHRNYVDDVPEEVK------QRRLTELIEAFREST 484 (524)
Q Consensus 419 G~--PgET~ed~~~tl~~l~-~l~~d~~~i~~~sp~pGT~~~~~~~~~v~~~~k------~~Rl~~l~~~~~~~~ 484 (524)
|- --++.+++.+.++-+. .++.+.+.+.+=.-...+|.--.....++.+++ .+.++++..+.+.+.
T Consensus 295 grni~~~d~e~v~~~l~~~~~~lg~~~l~lspsCgL~hvP~~~~~e~~l~~~~~~~~~fa~~Kl~el~~la~~l~ 369 (765)
T 1u1j_A 295 GRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALA 369 (765)
T ss_dssp SSSCBCCCHHHHHHHHHHHHHHCCSSCEEEEESSCGGGSCSCGGGCCSSCHHHHTTBCCHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCHHHHHHHHHHHHHhcCCCcEEEcCCCCccCCccccccccCCCHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 74 2378888888777665 457787766654333333322212246888888 888888887776543
No 225
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=21.89 E-value=6.1e+02 Score=25.38 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=33.6
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCH-HHHhhhCC-CCCHHHHHHHHHHHHHhCCCcEEE
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNS-AVLERMRR-GYTREAYLDLVQKIRQIIPDVGLS 413 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~-~vL~~m~R-~~t~e~~~~~v~~ir~~~pgi~i~ 413 (524)
+.+.++.+.+.-.. ..++|-+.++.+ .....|+| |.+.++..++++.+++. ++.+.
T Consensus 152 s~~el~~l~~~a~~-~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~~~~~~--~l~l~ 209 (419)
T 2plj_A 152 NLNELEKFKAYRDD-VELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAKEW--NIRIK 209 (419)
T ss_dssp SHHHHHTTGGGTTT-CEEEEEBCC---------CCCSCBCHHHHHHHHHHHHHT--TCEEE
T ss_pred CHHHHHHHHHhcCC-CCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHHHHHhC--CCcEE
Confidence 45666666653111 357777777532 12334788 78899999999999886 77654
No 226
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=21.73 E-value=6.3e+02 Score=25.46 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=34.4
Q ss_pred CHHHHHHHHcC--CCC-cceeecCcCCcCHHHHhhhCC-CCC-HHHHHHHHHHHHHhCC-CcEEEE-eEEEcC
Q 041524 355 PDELLYIMRDR--PNV-CKYIHLPAQTGNSAVLERMRR-GYT-REAYLDLVQKIRQIIP-DVGLSS-DFICGF 420 (524)
Q Consensus 355 ~~elL~~l~~~--~~G-~~~i~igiESgs~~vL~~m~R-~~t-~e~~~~~v~~ir~~~p-gi~i~~-~fI~G~ 420 (524)
+.+.++.|.+. ..| .-.++|-+.++ |+| |.. .++..++++.+.+. | ++.+.+ ..+.|.
T Consensus 149 s~~~l~~L~~~a~~~~~~~~V~l~VdtG-------~~R~Gv~~~~e~~~l~~~i~~~-~~~l~l~Gl~th~g~ 213 (426)
T 3gwq_A 149 SVEGVEQLGEFFKSVNKQLQVLLELGVP-------GGRTGVRDAAQRNAVLEAITRY-PDTLKLAGVELYEGV 213 (426)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEEECCT-------TSSSSBCSHHHHHHHHHHHHTS-TTTEEEEEEEECGGG
T ss_pred CHHHHHHHHHHHHHCCCeeEEEEEeCCC-------CCcCCCCCHHHHHHHHHHHHcC-CCCEEEEeEEEEccc
Confidence 45555555431 013 23577777776 566 665 58899999888765 7 776643 333443
No 227
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=21.48 E-value=2.8e+02 Score=26.08 Aligned_cols=73 Identities=5% Similarity=0.104 Sum_probs=48.9
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCC-CHHHHHHHHH
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGE-TEEEHADTLT 433 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgE-T~ed~~~tl~ 433 (524)
+++.++.|++. |++.|-+++..+. ...+ ...+.+.++++.+.+. |+.+..|+ -+++|- ..+...+..+
T Consensus 33 ~~~~~~~i~~~--G~N~VRi~~~~~~-----~~~~-~~~~~ld~~v~~a~~~--Gi~Vild~-H~~~~~~~~~~~~~~~~ 101 (294)
T 2whl_A 33 ASTAIPAIAEQ--GANTIRIVLSDGG-----QWEK-DDIDTIREVIELAEQN--KMVAVVEV-HDATGRDSRSDLNRAVD 101 (294)
T ss_dssp HHHHHHHHHHT--TCSEEEEEECCSS-----SSCC-CCHHHHHHHHHHHHTT--TCEEEEEE-CTTTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCEEEEEecCCC-----ccCc-cHHHHHHHHHHHHHHC--CCEEEEEe-ccCCCCCcchhHHHHHH
Confidence 56789999998 9999988875321 1111 2578899999999999 99887775 344542 2344455555
Q ss_pred HHHHc
Q 041524 434 LMKAV 438 (524)
Q Consensus 434 ~l~~l 438 (524)
+..++
T Consensus 102 ~w~~i 106 (294)
T 2whl_A 102 YWIEM 106 (294)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 54443
No 228
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=21.36 E-value=5.6e+02 Score=28.12 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCce
Q 041524 263 RPVESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEM 342 (524)
Q Consensus 263 r~~e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 342 (524)
.+++.+++-++.+.+.|+..|.|.|- .+.. .+..+.++++.+.+..|..
T Consensus 258 ~~~e~~~~~a~~l~~~Ga~~I~l~DT-~G~~------------------------------~P~~v~~lV~~lk~~~p~~ 306 (718)
T 3bg3_A 258 YSLQYYMGLAEELVRAGTHILCIKDM-AGLL------------------------------KPTACTMLVSSLRDRFPDL 306 (718)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEECT-TSCC------------------------------CHHHHHHHHHHHHHHSTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCc-CCCc------------------------------CHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999998863 2211 1356788888888877656
Q ss_pred EEEEecCCCCCC-CHHHHHHHHcCCCCcceeecCcCCc
Q 041524 343 RFRYTSPHPKDF-PDELLYIMRDRPNVCKYIHLPAQTG 379 (524)
Q Consensus 343 ~ir~~s~~p~~~-~~elL~~l~~~~~G~~~i~igiESg 379 (524)
.+.+.+-+-..+ ....+..+. + |+.+|+..+-..
T Consensus 307 ~I~~H~Hnd~GlAvANslaAve-A--Ga~~VD~ti~Gl 341 (718)
T 3bg3_A 307 PLHIHTHDTSGAGVAAMLACAQ-A--GADVVDVAADSM 341 (718)
T ss_dssp CEEEECCCTTSCHHHHHHHHHH-T--TCSEEEEBCGGG
T ss_pred eEEEEECCCccHHHHHHHHHHH-h--CCCEEEecCccc
Confidence 666653211111 234455553 4 999998776643
No 229
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=21.36 E-value=1.8e+02 Score=27.27 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEE------------cCCCCCHHHHHHHHHHHHHcCCCeEEEEeeecCCCC
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFIC------------GFCGETEEEHADTLTLMKAVGYDMAYMFAYSMRERT 454 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~------------G~PgET~ed~~~tl~~l~~l~~d~~~i~~~sp~pGT 454 (524)
..+.+....+.+++.+|+..+..-|.. +-| .+.++++-+.+-+++.+.+.++.+.+|+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P-----~i~~al~~l~~~G~~~ivV~Pl~l~~G~ 93 (269)
T 2xvy_A 24 ARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAP-----SPAEALAGMAEEGFTHVAVQSLHTIPGE 93 (269)
T ss_dssp TTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCC-----CHHHHHHHHHHTTCCEEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCC-----CHHHHHHHHHHCCCCEEEEEeceeeccH
Confidence 455677777777777788777776664 333 3444666677778888888888887776
No 230
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=21.27 E-value=4.5e+02 Score=23.63 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=47.9
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEE-eEEE-----c----CCC--
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSS-DFIC-----G----FCG-- 422 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~-~fI~-----G----~Pg-- 422 (524)
-++.++.+++. |+..|.+.... +.+.+ ++-+.+++. |+.+.+ ..-. | .|.
T Consensus 17 ~~~~l~~~~~~--G~~~vEl~~~~-----------~~~~~---~~~~~l~~~--gl~~~~~~~~~~~~~~g~~~~~~~~~ 78 (260)
T 1k77_A 17 FIERFAAARKA--GFDAVEFLFPY-----------NYSTL---QIQKQLEQN--HLTLALFNTAPGDINAGEWGLSALPG 78 (260)
T ss_dssp GGGHHHHHHHH--TCSEEECSCCT-----------TSCHH---HHHHHHHHT--TCEEEEEECCCCCGGGTCSCSTTCTT
T ss_pred HHHHHHHHHHh--CCCEEEecCCC-----------CCCHH---HHHHHHHHc--CCceEEEecCCcccccccCCCCCChh
Confidence 36788999998 99999987521 23333 444556677 887764 2111 1 111
Q ss_pred ---CCHHHHHHHHHHHHHcCCCeEEEE
Q 041524 423 ---ETEEEHADTLTLMKAVGYDMAYMF 446 (524)
Q Consensus 423 ---ET~ed~~~tl~~l~~l~~d~~~i~ 446 (524)
+..+.+++.++++.+++...+.+.
T Consensus 79 ~~~~~~~~~~~~i~~a~~lG~~~v~~~ 105 (260)
T 1k77_A 79 REHEAHADIDLALEYALALNCEQVHVM 105 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 124678889999999999877553
No 231
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=21.20 E-value=54 Score=30.34 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=18.5
Q ss_pred CCEEEE-EcccccccHHHHHhhCCcceEEECCCC
Q 041524 161 PPKIVV-LGCMAERLKDKILDADKMVDVVCGPDA 193 (524)
Q Consensus 161 ~~~Ivv-gG~~at~~~e~~l~~~~~vD~Vv~geg 193 (524)
+.+|++ ||..++ .-.++.+. ++|.|+.|-+
T Consensus 173 ~~pi~v~GGI~~~-ni~~~~~a--GaD~vvvGsa 203 (228)
T 1h1y_A 173 SLDIEVDGGLGPS-TIDVAASA--GANCIVAGSS 203 (228)
T ss_dssp TSEEEEESSCSTT-THHHHHHH--TCCEEEESHH
T ss_pred CCCEEEECCcCHH-HHHHHHHc--CCCEEEECHH
Confidence 556665 555555 44555543 6999988743
No 232
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=21.16 E-value=5.7e+02 Score=24.78 Aligned_cols=51 Identities=8% Similarity=0.233 Sum_probs=35.8
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCC-CCCHHHHHHHHHHHHHhCCCcEEE
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRR-GYTREAYLDLVQKIRQIIPDVGLS 413 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R-~~t~e~~~~~v~~ir~~~pgi~i~ 413 (524)
+.+.++.+.+.-..--.+++-+.+| |+| |.+.++..++++.+++. |++.+.
T Consensus 102 s~~~l~~l~~~a~~~~~v~l~vdtG-------~~R~G~~~~~~~~~~~~~~~~-~~l~~~ 153 (361)
T 2dy3_A 102 SPAHAKALIETDAEHIRVSIKIDSG-------LHRSGVDEQEWEGVFSALAAA-PHIEVT 153 (361)
T ss_dssp SHHHHHHHHTSCCSCEEEEEEBCCS-------SCSSSBCHHHHHHHHHHHHTC-TTEEEE
T ss_pred CHHHHHHHHHhCccCCEEEEEEeCC-------CCCCCCCHHHHHHHHHHHHhC-CCCCEE
Confidence 5678888876411123578878876 677 77899999999988764 677653
No 233
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=21.07 E-value=22 Score=26.16 Aligned_cols=28 Identities=14% Similarity=-0.083 Sum_probs=17.9
Q ss_pred EEEcccCCccCcccccCCCCCccccCChH
Q 041524 238 VSVMRGCNNMCSFCIVPFTRGRERSRPVE 266 (524)
Q Consensus 238 v~isRGC~~~CsFC~vp~~~G~~Rsr~~e 266 (524)
|.+..|||+ |.+|..+...|-.--.+|+
T Consensus 10 v~~~~~Cpn-C~~~tt~~~~G~v~i~dP~ 37 (59)
T 3lpe_B 10 LTNDEICPI-CHSPTSENWIGLLIVINPE 37 (59)
T ss_dssp EESSSBCTT-TCCBEESCEECEEEESCTT
T ss_pred ccCCCCCCC-CCCCccCCEeeEEEEeCCc
Confidence 455669998 9999765556643333333
No 234
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=21.05 E-value=3e+02 Score=26.07 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEE--c-----CCCCC----
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFIC--G-----FCGET---- 424 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~--G-----~PgET---- 424 (524)
+..++.++++ |+..|.+......+. .....+.+...++-+.+.+. |+.+.+-... + +-..+
T Consensus 38 ~~~~~~a~~~--G~~~vEl~~~~~~~~----~~~~~~~~~~~~~~~~l~~~--Gl~i~~~~~~~~~~~~~~l~~~d~~~r 109 (316)
T 3qxb_A 38 RLAGLVRDDL--GLEYVQYTYDLTDPW----WPDIERDRRAIAYAKAFRKA--GLTIESTFGGLASYTYNHFLAPTLELQ 109 (316)
T ss_dssp HHHHHHHHTS--CCCEEEEETTTSCTT----SCHHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTSCBTTCSSHHHH
T ss_pred HHHHHHHHHc--CCCEEEeeccccCcc----ccccchhhHHHHHHHHHHHc--CCeEEEeeccccccccccCCCCCHHHH
Confidence 3345677788 999999987654321 00001122455566677777 9987653321 2 11122
Q ss_pred ---HHHHHHHHHHHHHcCCCeEE
Q 041524 425 ---EEEHADTLTLMKAVGYDMAY 444 (524)
Q Consensus 425 ---~ed~~~tl~~l~~l~~d~~~ 444 (524)
.+.+++.++++.+++...+.
T Consensus 110 ~~~~~~~~~~i~~A~~lGa~~v~ 132 (316)
T 3qxb_A 110 SLGYQHLKRAIDMTAAMEVPATG 132 (316)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 24577888999999998774
No 235
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.93 E-value=1.5e+02 Score=23.85 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCCeecc-CCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhcccccccccC
Q 041524 90 VNDMEIVLSIMKNAGYSEVI-NVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRSQSK 159 (524)
Q Consensus 90 ~~d~e~i~~~L~~~Gy~~~~-~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
....+.+...|.+. |++.. .+. ..+|+|++...... .. .+..++++ ++ ....
T Consensus 13 ~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~-~~---g~~~~~~l---~~----------~~~~ 74 (140)
T 3n53_A 13 DFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIG-EN---SPNLCLKL---KR----------SKGL 74 (140)
T ss_dssp HHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC----------CHHHHH---HT----------STTC
T ss_pred HHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCC-Cc---HHHHHHHH---Hc----------Cccc
Confidence 34455666666655 65421 111 36799999654322 12 23333333 10 0111
Q ss_pred CCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhcC
Q 041524 160 HPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYG 207 (524)
Q Consensus 160 p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~g 207 (524)
+..+|+ +.+........+.++ ....|++..+-....|.+.++.+..+
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~~-~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 75 KNVPLILLFSSEHKEAIVNGLH-SGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp TTCCEEEEECC----CTTTTTT-CCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHh-cCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 444444 455433323333333 34568888887766666666665443
No 236
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=20.89 E-value=79 Score=26.80 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=48.4
Q ss_pred CHHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCC-CcEEEEeEEEcCCCCCHHHHHHHHH
Q 041524 355 PDELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIP-DVGLSSDFICGFCGETEEEHADTLT 433 (524)
Q Consensus 355 ~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~p-gi~i~~~fI~G~PgET~ed~~~tl~ 433 (524)
.+++++...+. ....+-+..-.+ .+.+...+.++.+++..+ ++.+ ++-|-|--..+++.+..+
T Consensus 43 ~e~~v~~a~~~--~~d~v~lS~~~~-----------~~~~~~~~~i~~l~~~g~~~i~v---~vGG~~~~~~~~~~~~~~ 106 (137)
T 1ccw_A 43 QELFIKAAIET--KADAILVSSLYG-----------QGEIDCKGLRQKCDEAGLEGILL---YVGGNIVVGKQHWPDVEK 106 (137)
T ss_dssp HHHHHHHHHHH--TCSEEEEEECSS-----------THHHHHTTHHHHHHHTTCTTCEE---EEEESCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhc--CCCEEEEEecCc-----------CcHHHHHHHHHHHHhcCCCCCEE---EEECCCcCchHhhhhhHH
Confidence 46777887776 556555544332 234556778888888732 2332 444544222335556677
Q ss_pred HHHHcCCCeEEEEeeecCCCChhcc
Q 041524 434 LMKAVGYDMAYMFAYSMRERTHAHR 458 (524)
Q Consensus 434 ~l~~l~~d~~~i~~~sp~pGT~~~~ 458 (524)
.+++++++.+ -.|||++..
T Consensus 107 ~~~~~G~d~~------~~~g~~~~~ 125 (137)
T 1ccw_A 107 RFKDMGYDRV------YAPGTPPEV 125 (137)
T ss_dssp HHHHTTCSEE------CCTTCCHHH
T ss_pred HHHHCCCCEE------ECCCCCHHH
Confidence 8899999854 246776653
No 237
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=20.78 E-value=1.6e+02 Score=27.05 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=47.4
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCeeccCCCCCCcEEEEeecc----------CcchHHHHHHHHHHHHHHhhhhhhhcccc
Q 041524 84 YGCQMNVNDMEIVLSIMKNAGYSEVINVPENAEVIFINTCA----------IRDYAEHKVWQRLNYFWFLKREWKKNVAT 153 (524)
Q Consensus 84 ~GC~~N~~d~e~i~~~L~~~Gy~~~~~~~~~aDvv~intc~----------v~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 153 (524)
+|-++|-.-++.+.+.|..... +++.+.=.+.|||.+ =.-.+...+++.++.+
T Consensus 33 l~~~I~d~~a~~iiaqLl~L~~----ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~------------- 95 (205)
T 4gm2_A 33 LSSPIYPHISEQIISQLLYLEY----ESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYI------------- 95 (205)
T ss_dssp ECSCCCHHHHHHHHHHHHHHHH----HCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHS-------------
T ss_pred ECCEEcHHHHHHHHHHHHHHHh----cCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhc-------------
Confidence 7999999989999998875432 334455568899988 2234455677777654
Q ss_pred cccccCCCCEEEEEcccccc
Q 041524 154 GRSQSKHPPKIVVLGCMAER 173 (524)
Q Consensus 154 ~~~~~~p~~~IvvgG~~at~ 173 (524)
.+++.+++.|..|+.
T Consensus 96 -----~~~V~t~~~G~AaS~ 110 (205)
T 4gm2_A 96 -----SSDVYTYCLGKAYGI 110 (205)
T ss_dssp -----SSCEEEEEEEEEETH
T ss_pred -----CCCEEEEEEeeehhH
Confidence 367777777776664
No 238
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=20.70 E-value=98 Score=28.72 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=44.3
Q ss_pred HHHHHHHHHHCCCeec--c--CC--------CCCCcEEEEeeccCcchH---HHHHHHHHHHHHHhhhhhhhcccccccc
Q 041524 93 MEIVLSIMKNAGYSEV--I--NV--------PENAEVIFINTCAIRDYA---EHKVWQRLNYFWFLKREWKKNVATGRSQ 157 (524)
Q Consensus 93 ~e~i~~~L~~~Gy~~~--~--~~--------~~~aDvv~intc~v~~~a---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (524)
.......+++.|...- + .. .+.+|.|++.|...+... .....+.+++++.+.. +
T Consensus 101 ~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~-----------~ 169 (230)
T 1tqj_A 101 LHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCD-----------E 169 (230)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHH-----------h
Confidence 4455556667775421 1 11 146899988665433221 1123455555533321 1
Q ss_pred cCCCCEEEEEcccccccHHHHHhhCCcceEEECCCC
Q 041524 158 SKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDA 193 (524)
Q Consensus 158 ~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~geg 193 (524)
...+.+|+++|-.-.-...++.+. ++|.++.|-+
T Consensus 170 ~~~~~~I~v~GGI~~~~~~~~~~a--Gad~vvvGSa 203 (230)
T 1tqj_A 170 RGLDPWIEVDGGLKPNNTWQVLEA--GANAIVAGSA 203 (230)
T ss_dssp HTCCCEEEEESSCCTTTTHHHHHH--TCCEEEESHH
T ss_pred cCCCCcEEEECCcCHHHHHHHHHc--CCCEEEECHH
Confidence 124566776554333444555543 6899988843
No 239
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=20.68 E-value=2.4e+02 Score=25.05 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCCcceeecCcCCcCHHHHhhhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHH
Q 041524 356 DELLYIMRDRPNVCKYIHLPAQTGNSAVLERMRRGYTREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLM 435 (524)
Q Consensus 356 ~elL~~l~~~~~G~~~i~igiESgs~~vL~~m~R~~t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l 435 (524)
+..++...++ |...+.++.++. .+...++++.+++. |+.+..+++ + | +|. .+.+..+
T Consensus 67 ~~~~~~~~~~--Gad~v~v~~~~~-------------~~~~~~~~~~~~~~--g~~~~v~~~-~-~-~t~---~~~~~~~ 123 (211)
T 3f4w_A 67 HFESQLLFDA--GADYVTVLGVTD-------------VLTIQSCIRAAKEA--GKQVVVDMI-C-V-DDL---PARVRLL 123 (211)
T ss_dssp HHHHHHHHHT--TCSEEEEETTSC-------------HHHHHHHHHHHHHH--TCEEEEECT-T-C-SSH---HHHHHHH
T ss_pred HHHHHHHHhc--CCCEEEEeCCCC-------------hhHHHHHHHHHHHc--CCeEEEEec-C-C-CCH---HHHHHHH
Confidence 3348888888 999999987752 24567788888888 775433221 1 3 333 2334556
Q ss_pred HHcCCCeEEE
Q 041524 436 KAVGYDMAYM 445 (524)
Q Consensus 436 ~~l~~d~~~i 445 (524)
.+.+.+.+.+
T Consensus 124 ~~~g~d~i~v 133 (211)
T 3f4w_A 124 EEAGADMLAV 133 (211)
T ss_dssp HHHTCCEEEE
T ss_pred HHcCCCEEEE
Confidence 6778887654
No 240
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=20.45 E-value=3.1e+02 Score=21.41 Aligned_cols=99 Identities=10% Similarity=0.127 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHC-CCeec--cCCC---------CCCcEEEEeeccCcchHHHHHHHHHHHHHHhhhhhhhccccccc
Q 041524 89 NVNDMEIVLSIMKNA-GYSEV--INVP---------ENAEVIFINTCAIRDYAEHKVWQRLNYFWFLKREWKKNVATGRS 156 (524)
Q Consensus 89 N~~d~e~i~~~L~~~-Gy~~~--~~~~---------~~aDvv~intc~v~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 156 (524)
|....+.+...|.+. ||+.+ +.+. ..+|+|++........+ .++.+.+++.
T Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g-~~~~~~l~~~---------------- 73 (130)
T 1dz3_A 11 NRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDG-LAVLERIRAG---------------- 73 (130)
T ss_dssp CHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCH-HHHHHHHHHH----------------
T ss_pred CHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCH-HHHHHHHHhc----------------
Confidence 344566777788776 78642 2221 26899999765433322 2333333321
Q ss_pred ccCCCCEEE-EEcccccccHHHHHhhCCcceEEECCCCcccHHHHHHHHhc
Q 041524 157 QSKHPPKIV-VLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDY 206 (524)
Q Consensus 157 ~~~p~~~Iv-vgG~~at~~~e~~l~~~~~vD~Vv~gege~~l~~Ll~~~~~ 206 (524)
..+..+|+ +.+..........++ ....|++..+-....+.+.++.+..
T Consensus 74 -~~~~~~ii~ls~~~~~~~~~~~~~-~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 74 -FEHQPNVIMLTAFGQEDVTKKAVE-LGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp -CSSCCEEEEEEETTCHHHHHHHHH-TTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred -CCCCCcEEEEecCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 12445555 444332222233443 4556889888888888887776543
No 241
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=20.20 E-value=2.3e+02 Score=25.94 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=53.1
Q ss_pred EEEecCCC---CCHHHHHHHHHHHHHCCCeeccC--CC--------CCCcEEEEeeccCc------chH----HHHHHHH
Q 041524 80 YQETYGCQ---MNVNDMEIVLSIMKNAGYSEVIN--VP--------ENAEVIFINTCAIR------DYA----EHKVWQR 136 (524)
Q Consensus 80 ~~~t~GC~---~N~~d~e~i~~~L~~~Gy~~~~~--~~--------~~aDvv~intc~v~------~~a----~~~~~~~ 136 (524)
-.+.+|.. +...+.+......++.|...++. .. -.+++|.++.-.-. ..+ .+++.+.
T Consensus 84 d~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ 163 (219)
T 2h6r_A 84 KGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNINTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRA 163 (219)
T ss_dssp CEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSSHHHHHHTTTCCSEEEECCCC--------------CSHHHHHH
T ss_pred CEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHH
Confidence 34455774 66667777777778889854221 11 25689988764321 011 1233333
Q ss_pred HHHHHHhhhhhhhcccccccccCCCCEEEEEcccccccHHHHHhhCCcceEEECCCC
Q 041524 137 LNYFWFLKREWKKNVATGRSQSKHPPKIVVLGCMAERLKDKILDADKMVDVVCGPDA 193 (524)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~p~~~IvvgG~~at~~~e~~l~~~~~vD~Vv~geg 193 (524)
++.+ ..+.+|++||-.-+..--+.+. ...+|.|+.|.+
T Consensus 164 ir~~------------------~~~~~ii~ggGI~~~~~~~~~~-~~gaDgvlVGsA 201 (219)
T 2h6r_A 164 VKEI------------------NKDVKVLCGAGISKGEDVKAAL-DLGAEGVLLASG 201 (219)
T ss_dssp HHHH------------------CTTCEEEECSSCCSHHHHHHHH-TTTCCCEEESHH
T ss_pred HHhc------------------cCCCeEEEEeCcCcHHHHHHHh-hCCCCEEEEcHH
Confidence 3332 1257888888765533333333 357999998865
No 242
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=20.12 E-value=4.6e+02 Score=24.83 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeEEEcCCCCCHHHHHHHHHHHHHcCCCe
Q 041524 392 TREAYLDLVQKIRQIIPDVGLSSDFICGFCGETEEEHADTLTLMKAVGYDM 442 (524)
Q Consensus 392 t~e~~~~~v~~ir~~~pgi~i~~~fI~G~PgET~ed~~~tl~~l~~l~~d~ 442 (524)
|.++..++++.+.+...| +|+|.-+.+-++..+..+.+++.+.|.
T Consensus 49 s~~Er~~v~~~~~~~~~g------vi~Gvg~~~t~~ai~la~~A~~~Gada 93 (286)
T 2r91_A 49 SLQEKMELTDAATSAARR------VIVQVASLNADEAIALAKYAESRGAEA 93 (286)
T ss_dssp CHHHHHHHHHHHHHHCSS------EEEECCCSSHHHHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHHHHHhCC------EEEeeCCCCHHHHHHHHHHHHhcCCCE
Confidence 344445555544444333 444444434444444444444445443
No 243
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=20.08 E-value=3.8e+02 Score=28.49 Aligned_cols=109 Identities=10% Similarity=0.137 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCCCCCccCCccccCCCCccccccCcccchhcccchhhHHHHHHHHHhhCCceEEE
Q 041524 266 ESIVKEVDELWKEGVKEVTLLGQNVNSYNDTSGMEKEVEPGANWRLSEGFNSMCKVKKMGLRFADLLDRLSLEFPEMRFR 345 (524)
Q Consensus 266 e~Iv~Ei~~l~~~G~kei~l~d~n~~~y~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ir 345 (524)
++-.+.++.|++.|+.-|.+ |- -. |. .....+.++.+.+..|...+-
T Consensus 280 ~d~~eR~~aLv~AGvD~ivi-D~-ah--------------Gh-----------------s~~v~~~i~~ik~~~p~~~vi 326 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVL-DS-SQ--------------GN-----------------SVYQIEFIKWIKQTYPKIDVI 326 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEE-CC-SC--------------CC-----------------SHHHHHHHHHHHHHCTTSEEE
T ss_pred ccHHHHHHHHHhcCCcEEEE-ec-cc--------------cc-----------------cHHHHHHHHHHHhhCCcceEE
Confidence 45677888999999976654 31 11 21 245788888888887776654
Q ss_pred EecCCCCCCCHHHHHHHHcCCCCcceeecCcCCcCHHHHhhh-CCCC-CHHHHHHHHHHHHHhCCCcEEEEe
Q 041524 346 YTSPHPKDFPDELLYIMRDRPNVCKYIHLPAQTGNSAVLERM-RRGY-TREAYLDLVQKIRQIIPDVGLSSD 415 (524)
Q Consensus 346 ~~s~~p~~~~~elL~~l~~~~~G~~~i~igiESgs~~vL~~m-~R~~-t~e~~~~~v~~ir~~~pgi~i~~~ 415 (524)
... ..+.+-.+.|.++ |...+-+|+-.||--+-+.+ +=|. ....+.++.+.+++. |+.|.+|
T Consensus 327 aGN----VaT~e~a~~Li~a--GAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~--~vpvIAD 390 (556)
T 4af0_A 327 AGN----VVTREQAAQLIAA--GADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRF--GIPCIAD 390 (556)
T ss_dssp EEE----ECSHHHHHHHHHH--TCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGG--TCCEEEE
T ss_pred ecc----ccCHHHHHHHHHc--CCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHc--CCCEEec
Confidence 442 2467777777777 99999999998875543322 1122 356778888888888 8877665
Done!