BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041525
         (212 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K21|A Chain A, Nmr Structure Of Human Kcne1 In Lmpg Micelles At Ph 6.0
           And 40 Degree C
          Length = 138

 Score = 30.8 bits (68), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 35/80 (43%)

Query: 18  STKGEPEPRNALLKIAWYGSELLGIAASFLRSPSPSDVENDLKLATDGSGAAELDRATVV 77
           S  G+ E    L+ + ++G   LGI  S++RS       +   +  +     E D+A V 
Sbjct: 46  SGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYVQ 105

Query: 78  EAIKEDFARSYFVTGNITLD 97
             + E +   Y V  ++ ++
Sbjct: 106 ARVLESYKSCYVVENHLAIE 125


>pdb|3V46|A Chain A, Crystal Structure Of Yeast Cdc73 C-Terminal Domain
          Length = 170

 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 172 YYFNAETGRVCRHVEHWNVPKMALFK 197
           YYF+     V +HV+ WNV K+ L K
Sbjct: 118 YYFHFAGDSVPQHVQQWNVEKVELDK 143


>pdb|4DM4|A Chain A, The Conserved Domain Of Yeast Cdc73
 pdb|4DM4|B Chain B, The Conserved Domain Of Yeast Cdc73
          Length = 167

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 172 YYFNAETGRVCRHVEHWNVPKMALFK 197
           YYF+     V +HV+ WNV K+ L K
Sbjct: 107 YYFHFAGDSVPQHVQQWNVEKVELDK 132


>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From
           The Hyperthermophilic Bacterium Thermotoga Maritima
          Length = 398

 Score = 26.9 bits (58), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 20  KGEPEPRNALLKIAWYGSELLGIAASFLRSPSPSDVENDLKLATD 64
           KGEP P  +L  +A   SELLG    F+    P+ V +++K A +
Sbjct: 63  KGEPSPEFSLAPVAKRLSELLGKEVKFV----PAVVGDEVKKAVE 103


>pdb|3G6J|E Chain E, C3b In Complex With A C3b Specific Fab
 pdb|3G6J|G Chain G, C3b In Complex With A C3b Specific Fab
          Length = 214

 Score = 26.9 bits (58), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 32  IAWY------GSELLGIAASFLRSPSPSDVENDLKLATDGSGAAELDRATVVEAIKEDFA 85
           +AWY        +LL  +ASFL S  PS           GSG+      T+     EDFA
Sbjct: 33  VAWYQQKPGKAPKLLIYSASFLYSGVPSRF--------SGSGSGTDFTLTISSLQPEDFA 84

Query: 86  RSYFVTGNITLDAYEE 101
             Y      TL  +E+
Sbjct: 85  TYYCQQSYATLPTFEQ 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,592,385
Number of Sequences: 62578
Number of extensions: 276045
Number of successful extensions: 457
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 6
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)