BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041525
         (212 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7U326|TRMA_HELHP tRNA (uracil(54)-C(5))-methyltransferase OS=Helicobacter hepaticus
           (strain ATCC 51449 / 3B1) GN=trmA PE=3 SV=1
          Length = 404

 Score = 34.7 bits (78), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 35  YGSELLGIAASFL-RSPSPSDVENDLKLATDGSGAAELDRATVVEAIKEDFARSYFVTGN 93
           + +E++  A + L ++ + +++EN +         A L+    ++A++++  R +F   N
Sbjct: 269 FATEVVKSAITLLQKNMAKNNIENII--------PARLNAFESIQALRKE--RVFFRLKN 318

Query: 94  ITLDAYEEDCEFADPAGSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGIGHW--R 151
           I LDA+  DC   DP  S  G         NF  +I  S    T  +D       H+  R
Sbjct: 319 IDLDAFAFDCVLIDPPRSGVGEEEVLYFLQNFNTIIYVSCNPHTLLNDLRILSQSHYVMR 378

Query: 152 FNCIMSFP 159
           F     FP
Sbjct: 379 FGLFDQFP 386


>sp|Q09891|ATCX_SCHPO Putative phospholipid-transporting ATPase C24B11.12c
            OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
            GN=SPAC24B11.12c PE=3 SV=1
          Length = 1402

 Score = 32.3 bits (72), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 134  MNLTRWDDFEDKGIGHWRFNCIMSFPWRPILSATGYTEYYFNAETGRVCRHVEHWNV 190
            +N + WD F    IG W  +C+  + W  + S + YT Y F     R+ R    W V
Sbjct: 1211 LNQSNWDVF---SIGLWALSCLTFWFWTGVYSQSLYT-YEFYKSASRIFRTPNFWAV 1263


>sp|P0CN00|CWC26_CRYNJ Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain JEC21 / ATCC MYA-565)
           GN=CWC26 PE=3 SV=1
          Length = 331

 Score = 32.3 bits (72), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 148 GHW---RFNCIMSFPWRPILSATGYTEYYFNAETGRVCRHVEH--WNVPKM 193
           G W   RF     F W  +  + G+ + YF A+  R  R  EH  W+V  M
Sbjct: 281 GPWAPNRFGIAPGFRWDGVDRSNGFEKKYFQAQNTRARREYEHNQWSVEDM 331


>sp|P0CN01|CWC26_CRYNB Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain B-3501A) GN=CWC26 PE=3
           SV=1
          Length = 331

 Score = 32.3 bits (72), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 148 GHW---RFNCIMSFPWRPILSATGYTEYYFNAETGRVCRHVEH--WNVPKM 193
           G W   RF     F W  +  + G+ + YF A+  R  R  EH  W+V  M
Sbjct: 281 GPWAPNRFGIAPGFRWDGVDRSNGFEKKYFQAQNTRARREYEHNQWSVEDM 331


>sp|P15382|KCNE1_HUMAN Potassium voltage-gated channel subfamily E member 1 OS=Homo
           sapiens GN=KCNE1 PE=1 SV=1
          Length = 129

 Score = 31.6 bits (70), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 36/80 (45%)

Query: 18  STKGEPEPRNALLKIAWYGSELLGIAASFLRSPSPSDVENDLKLATDGSGAAELDRATVV 77
           S+ G+ E    L+ + ++G   LGI  S++RS       +   +  +     E D+A V 
Sbjct: 37  SSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYVQ 96

Query: 78  EAIKEDFARSYFVTGNITLD 97
             + E +   Y V  ++ ++
Sbjct: 97  ARVLESYRSCYVVENHLAIE 116


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,220,831
Number of Sequences: 539616
Number of extensions: 3370756
Number of successful extensions: 6269
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6268
Number of HSP's gapped (non-prelim): 6
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)