Query 041525
Match_columns 212
No_of_seqs 149 out of 404
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:03:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 100.0 8.7E-29 1.9E-33 192.9 14.0 107 75-184 2-113 (113)
2 TIGR02096 conserved hypothetic 99.5 2.2E-13 4.8E-18 104.6 13.7 109 80-192 4-123 (129)
3 cd00781 ketosteroid_isomerase 99.4 4.6E-13 9.9E-18 102.3 8.7 101 90-194 17-121 (122)
4 PF12680 SnoaL_2: SnoaL-like d 99.3 2.2E-11 4.8E-16 87.6 11.6 87 95-184 16-102 (102)
5 PF07366 SnoaL: SnoaL-like pol 99.3 8.5E-11 1.8E-15 90.7 12.3 102 94-199 18-126 (126)
6 KOG4457 Uncharacterized conser 98.9 5.8E-09 1.3E-13 87.4 9.7 114 69-185 31-165 (202)
7 PF07858 LEH: Limonene-1,2-epo 98.6 4.7E-07 1E-11 72.5 10.0 116 73-194 3-120 (125)
8 PRK08241 RNA polymerase factor 98.5 2.6E-06 5.7E-11 76.5 12.7 122 71-204 211-336 (339)
9 TIGR02960 SigX5 RNA polymerase 98.3 1.9E-05 4.2E-10 70.2 12.9 114 72-196 202-321 (324)
10 PF13474 SnoaL_3: SnoaL-like d 97.6 0.0011 2.5E-08 49.3 10.6 104 75-184 3-114 (121)
11 TIGR02246 conserved hypothetic 97.2 0.011 2.4E-07 44.6 11.5 75 77-152 6-87 (128)
12 COG3631 Ketosteroid isomerase- 97.1 0.0057 1.2E-07 49.4 9.9 112 77-194 7-127 (133)
13 COG4319 Ketosteroid isomerase 97.0 0.011 2.4E-07 48.2 10.8 81 95-175 31-115 (137)
14 PF14534 DUF4440: Domain of un 96.5 0.029 6.3E-07 40.3 8.8 81 94-175 19-99 (107)
15 cd00531 NTF2_like Nuclear tran 96.5 0.091 2E-06 37.8 11.3 92 94-189 19-124 (124)
16 COG4308 LimA Limonene-1,2-epox 95.0 0.19 4.1E-06 40.4 8.3 113 72-193 7-122 (130)
17 COG5485 Predicted ester cyclas 95.0 0.086 1.9E-06 42.5 6.3 89 99-191 30-124 (131)
18 PF13577 SnoaL_4: SnoaL-like d 92.1 2.3 5E-05 31.6 9.6 83 77-160 9-98 (127)
19 PRK09636 RNA polymerase sigma 91.5 2 4.3E-05 38.0 9.9 97 74-185 171-278 (293)
20 PF02136 NTF2: Nuclear transpo 90.7 1.9 4.1E-05 32.3 7.8 80 79-162 5-91 (118)
21 cd00780 NTF2 Nuclear transport 83.6 17 0.00037 27.6 11.1 88 74-168 3-97 (119)
22 COG4922 Uncharacterized protei 83.2 13 0.00027 30.0 8.6 67 112-184 43-109 (129)
23 KOG2546 Abl interactor ABI-1, 80.3 0.36 7.7E-06 46.2 -1.2 85 94-180 90-178 (483)
24 PF03284 PHZA_PHZB: Phenazine 79.9 35 0.00075 28.6 11.0 93 96-190 39-141 (162)
25 PF12893 Lumazine_bd_2: Putati 70.0 19 0.0004 27.2 6.2 81 73-155 3-91 (116)
26 PF08332 CaMKII_AD: Calcium/ca 69.0 58 0.0013 26.1 9.8 63 95-157 24-93 (128)
27 TIGR03357 VI_zyme type VI secr 57.4 91 0.002 24.4 11.3 105 69-181 19-131 (133)
28 PF07080 DUF1348: Protein of u 44.1 1.8E+02 0.004 24.0 11.9 106 69-183 5-116 (143)
29 PF06764 DUF1223: Protein of u 43.5 9.3 0.0002 32.9 0.5 13 181-193 32-44 (202)
30 PF08830 DUF1806: Protein of u 42.0 78 0.0017 25.2 5.3 48 127-181 44-91 (114)
31 TIGR02957 SigX4 RNA polymerase 24.4 4.8E+02 0.01 22.8 10.4 39 90-128 178-226 (281)
32 COG4946 Uncharacterized protei 20.5 1.1E+02 0.0024 30.4 3.5 41 147-195 151-199 (668)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.96 E-value=8.7e-29 Score=192.95 Aligned_cols=107 Identities=34% Similarity=0.700 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhhccCcCCCccccccCCCeEEeCCCCcccchHHHHHH---HHHHhc-ccccceEEEeEeEEeCC-eEEEE
Q 041525 75 TVVEAIKEDFARSYFVTGNITLDAYEEDCEFADPAGSFKGLRRFKRN---CTNFGL-LIDKSNMNLTRWDDFED-KGIGH 149 (212)
Q Consensus 75 ~vl~~L~~dy~~~Yf~tg~~~~~iY~~Dv~F~DP~~~f~Gld~y~~~---f~~L~~-~~~~~~f~l~~~~~~~~-~~~~~ 149 (212)
++++.|++||++ |++|+++.+||++||+|+||+++|+|+++|+++ +..+.. ++.+++++|+++.+.++ .+.++
T Consensus 2 ~~~~~Lr~D~~~--~f~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~r 79 (113)
T PF10184_consen 2 DVIRTLREDLPR--FFTGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRAR 79 (113)
T ss_pred hHHHHHHHHHHH--HhcCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEE
Confidence 579999999998 459999999999999999999999999999999 777777 78999999999999876 89999
Q ss_pred EEEEEEecCCCCCeeEEEEEEEEEEeCCCCCEEEE
Q 041525 150 WRFNCIMSFPWRPILSATGYTEYYFNAETGRVCRH 184 (212)
Q Consensus 150 W~m~~~lkLpw~p~i~v~G~S~l~fd~d~GkI~~H 184 (212)
|+|++.+++||+|.+.++|+|+|++|++ |+|++|
T Consensus 80 W~~~g~~~l~w~p~~~~~G~S~~~ln~~-g~I~~H 113 (113)
T PF10184_consen 80 WRLRGVPRLPWRPRISFDGTSTYTLNSD-GLIYRH 113 (113)
T ss_pred EEEEEEeCCCcCCcEEEEEEEEEEECCC-CcEEeC
Confidence 9999999999999999999999999998 899998
No 2
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.54 E-value=2.2e-13 Score=104.62 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=90.3
Q ss_pred HHHHhhhccCcCCC--ccccccCCCeEEeCCCC--cccchHHHHHHHHHHhcccccceEEEeEeEEeCC-eEEEEEEEEE
Q 041525 80 IKEDFARSYFVTGN--ITLDAYEEDCEFADPAG--SFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFED-KGIGHWRFNC 154 (212)
Q Consensus 80 L~~dy~~~Yf~tg~--~~~~iY~~Dv~F~DP~~--~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~-~~~~~W~m~~ 154 (212)
+++.|+. +-+++ .+.++|++|++|.||.. ...|++.+++.++.+...+.+.+++++.+...++ .+.+.|+|++
T Consensus 4 v~~~~~a--~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g 81 (129)
T TIGR02096 4 AQHWIEA--FNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAEWTVHG 81 (129)
T ss_pred HHHHHHH--HHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEEEEEee
Confidence 3444544 44555 48899999999999974 4678999999999999999999999998877666 8999999999
Q ss_pred Eec-----C-CCCCeeEEEEEEEEEEeCCCCCEEEEEEeccCCh
Q 041525 155 IMS-----F-PWRPILSATGYTEYYFNAETGRVCRHVEHWNVPK 192 (212)
Q Consensus 155 ~lk-----L-pw~p~i~v~G~S~l~fd~d~GkI~~HrDyWD~sa 192 (212)
.++ + +.+..+.+.|++.++|++ |||++|++|||...
T Consensus 82 ~~~g~~~g~~~~g~~~~~~~~~~~~~~~--gkI~~~~~y~D~~~ 123 (129)
T TIGR02096 82 TYRTAFLGLPASGKTYSIRGVTFFVFDD--GKIKRETTYYNLAT 123 (129)
T ss_pred eeccccCCCCCCCCEEEeeeeEEEEEeC--CEEEEEEEEecHHH
Confidence 984 1 345678999999999984 99999999999653
No 3
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.44 E-value=4.6e-13 Score=102.32 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=81.9
Q ss_pred cCCC--ccccccCCCeEEeCCCC--cccchHHHHHHHHHHhcccccceEEEeEeEEeCCeEEEEEEEEEEecCCCCCeeE
Q 041525 90 VTGN--ITLDAYEEDCEFADPAG--SFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGIGHWRFNCIMSFPWRPILS 165 (212)
Q Consensus 90 ~tg~--~~~~iY~~Dv~F~DP~~--~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~~~~W~m~~~lkLpw~p~i~ 165 (212)
..++ .+.++|++||+|.||.. .++|++.+++++..+........+.+......++.+.+.|+++.... +..+.
T Consensus 17 ~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---g~~~~ 93 (122)
T cd00781 17 NAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKRLELTGPVRASHGGEAAFAFRVEFEWE---GQPCV 93 (122)
T ss_pred HCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCceEEecCceeeecCCEEEEEEEEEEEeC---CceEE
Confidence 3455 48899999999999964 49999999999999887766555555555556788888999886543 45689
Q ss_pred EEEEEEEEEeCCCCCEEEEEEeccCChhh
Q 041525 166 ATGYTEYYFNAETGRVCRHVEHWNVPKMA 194 (212)
Q Consensus 166 v~G~S~l~fd~d~GkI~~HrDyWD~sa~~ 194 (212)
++|++.++|+++ |||.++++|||...|.
T Consensus 94 ~~~~~v~~~~~d-GkI~~~~~y~d~~~~~ 121 (122)
T cd00781 94 VRVIDVMRFDAD-GRIVSMRAYWGPVNLH 121 (122)
T ss_pred EEEEEEEEECCC-ccChHHHHhcCccccc
Confidence 999999999876 9999999999998774
No 4
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.34 E-value=2.2e-11 Score=87.63 Aligned_cols=87 Identities=17% Similarity=0.311 Sum_probs=79.8
Q ss_pred cccccCCCeEEeCCCCcccchHHHHHHHHHHhcccccceEEEeEeEEeCCeEEEEEEEEEEecCCCCCeeEEEEEEEEEE
Q 041525 95 TLDAYEEDCEFADPAGSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGIGHWRFNCIMSFPWRPILSATGYTEYYF 174 (212)
Q Consensus 95 ~~~iY~~Dv~F~DP~~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~~~~W~m~~~lkLpw~p~i~v~G~S~l~f 174 (212)
+.++|++||+|.||....+|.++|...+..+...+.+.+++++.+...++.+.+.|++++.. .+-+..+.+.|++.++|
T Consensus 16 i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 94 (102)
T PF12680_consen 16 IAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDIFADGDRVVVEWTVTGTT-PPTGQPISFRGCSVFRF 94 (102)
T ss_dssp HHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEEE-TTTSCEEEEEEEEEEEE
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEEEEcCCEEEEEEEEEEEE-cCCCCEEEEEEEEEEEE
Confidence 78999999999999889999999999999999999999999999999999999999999973 34666789999999999
Q ss_pred eCCCCCEEEE
Q 041525 175 NAETGRVCRH 184 (212)
Q Consensus 175 d~d~GkI~~H 184 (212)
.+ |||++|
T Consensus 95 ~d--gkI~~~ 102 (102)
T PF12680_consen 95 ED--GKIVEH 102 (102)
T ss_dssp ET--TEEEEE
T ss_pred EC--CEEEEC
Confidence 65 999998
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.28 E-value=8.5e-11 Score=90.71 Aligned_cols=102 Identities=18% Similarity=0.278 Sum_probs=90.1
Q ss_pred ccccccCCCeEEeCCC-CcccchHHHHHHHHHHhcccccceEEEeEeEEeCCeEEEEEEEEEEec--C----CCCCeeEE
Q 041525 94 ITLDAYEEDCEFADPA-GSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGIGHWRFNCIMS--F----PWRPILSA 166 (212)
Q Consensus 94 ~~~~iY~~Dv~F~DP~-~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~~~~W~m~~~lk--L----pw~p~i~v 166 (212)
...++|++||.+.+|. ....|++.|+..+..+...|.+.++++.++...++.+.++|++++.|. + |-+..+.+
T Consensus 18 ~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~gd~v~~~~~~~Gth~g~~~g~~ptgk~v~~ 97 (126)
T PF07366_consen 18 ALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDVVAEGDRVAVRWTFTGTHTGEFMGIPPTGKPVEF 97 (126)
T ss_dssp HHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE-TTEEEEE
T ss_pred HHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEEEEEEeecCCcCCcCCCCCEEEE
Confidence 4889999999999997 788999999999999999999999999999999999999999999994 2 34557899
Q ss_pred EEEEEEEEeCCCCCEEEEEEeccCChhhHHHHH
Q 041525 167 TGYTEYYFNAETGRVCRHVEHWNVPKMALFKQI 199 (212)
Q Consensus 167 ~G~S~l~fd~d~GkI~~HrDyWD~sa~~~l~q~ 199 (212)
.|++.++|++ |||++|..+||... .++|+
T Consensus 98 ~~~~~~~~~~--gkI~e~~~~~D~~~--~~~QL 126 (126)
T PF07366_consen 98 RGMSIFRFED--GKIVEEWVYFDELS--LLRQL 126 (126)
T ss_dssp EEEEEEEEET--TEEEEEEEEECHHH--HHHHT
T ss_pred EEEEEEEEEC--CEEEEEEEEECHHH--HHhhC
Confidence 9999999997 99999999999643 44443
No 6
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=5.8e-09 Score=87.38 Aligned_cols=114 Identities=18% Similarity=0.345 Sum_probs=91.7
Q ss_pred ccCCHHHHHHHHHHHhhhccCcCCCccccccCCCeEEeCCCCc--ccchHHHHHHHHHHhc----ccccceEEEeEeEEe
Q 041525 69 AELDRATVVEAIKEDFARSYFVTGNITLDAYEEDCEFADPAGS--FKGLRRFKRNCTNFGL----LIDKSNMNLTRWDDF 142 (212)
Q Consensus 69 ~~~~~~~vl~~L~~dy~~~Yf~tg~~~~~iY~~Dv~F~DP~~~--f~Gld~y~~~f~~L~~----~~~~~~f~l~~~~~~ 142 (212)
.|-+.+-+-++|++..+. ++-..+++++|+.|++|.|-+.+ .+|+..|...|+.+.. .+...+|+++++...
T Consensus 31 ~pe~L~~~yerLr~tlPk--lF~~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h 108 (202)
T KOG4457|consen 31 APEQLEHVYERLRETLPK--LFRRRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPH 108 (202)
T ss_pred ChHHHHHHHHHHHHHhHH--HHhhcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeeccc
Confidence 356788889999999998 67778999999999999999855 4799999888765543 356789999998754
Q ss_pred --CCeEEEEEEEEEEe--cCCCCCee--------E---EEEEEEEEEeCCCCCEEEEE
Q 041525 143 --EDKGIGHWRFNCIM--SFPWRPIL--------S---ATGYTEYYFNAETGRVCRHV 185 (212)
Q Consensus 143 --~~~~~~~W~m~~~l--kLpw~p~i--------~---v~G~S~l~fd~d~GkI~~Hr 185 (212)
+.++.+|||+.+.. .+-|++.+ . ++|.|++++|++ |+|+.|+
T Consensus 109 ~d~~Tvr~RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~~-GlI~kh~ 165 (202)
T KOG4457|consen 109 IDEGTVRCRWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDGN-GLIYKHT 165 (202)
T ss_pred CCCceEEEEEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECCC-ceEEeee
Confidence 45788999999863 34455532 2 799999999997 9999996
No 7
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=98.59 E-value=4.7e-07 Score=72.46 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhhccCcC-CCccccccCCC-eEEeCCCCcccchHHHHHHHHHHhcccccceEEEeEeEEeCCeEEEEE
Q 041525 73 RATVVEAIKEDFARSYFVT-GNITLDAYEED-CEFADPAGSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGIGHW 150 (212)
Q Consensus 73 ~~~vl~~L~~dy~~~Yf~t-g~~~~~iY~~D-v~F~DP~~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~~~~W 150 (212)
.+++++.|.+-++. .. ...+..++++| ++..-|+-.++|+++..+.+..|...+....++|+.+...+ .+.+.+
T Consensus 3 ~~~vV~~F~~a~~~---~D~~~a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaadg-~~VltE 78 (125)
T PF07858_consen 3 PEEVVRAFLAALED---RDVDAALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAADG-DVVLTE 78 (125)
T ss_dssp HHHHHHHHHHHHHH---T-HHHHHHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEEET-TEEEEE
T ss_pred hHHHHHHHHHHHHc---CCHHHHHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEeecC-CEEEEE
Confidence 45566666666654 22 12355788899 88889999999999999999988777888899999998865 556777
Q ss_pred EEEEEecCCCCCeeEEEEEEEEEEeCCCCCEEEEEEeccCChhh
Q 041525 151 RFNCIMSFPWRPILSATGYTEYYFNAETGRVCRHVEHWNVPKMA 194 (212)
Q Consensus 151 ~m~~~lkLpw~p~i~v~G~S~l~fd~d~GkI~~HrDyWD~sa~~ 194 (212)
|+-....-.++..+.+.-|-.+.+.+ |||+.-|||||+..+.
T Consensus 79 R~D~l~~~dG~~~~~~~V~GvfEv~d--GkI~~WRDYFD~~~~~ 120 (125)
T PF07858_consen 79 RTDVLRFADGPLRIQFPVCGVFEVRD--GKITLWRDYFDLADFL 120 (125)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEET--TEEEEEEEE--HHHHH
T ss_pred eEeeeeeecCCeEEEEEEEEEEEEEC--CEEEEEeccCCHHHHH
Confidence 77765432232356666667777776 9999999999987664
No 8
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=98.47 E-value=2.6e-06 Score=76.54 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHhhhccCcCCCc--cccccCCCeEEeCCCCc--ccchHHHHHHHHHHhcccccceEEEeEeEEeCCeE
Q 041525 71 LDRATVVEAIKEDFARSYFVTGNI--TLDAYEEDCEFADPAGS--FKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKG 146 (212)
Q Consensus 71 ~~~~~vl~~L~~dy~~~Yf~tg~~--~~~iY~~Dv~F~DP~~~--f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~ 146 (212)
.+.++..+.+++.|+. |-+|++ +.+++++||++.+|... ++|.+++..+|..+........+.+......++.+
T Consensus 211 ~~~~~~~~~v~~~~~A--~~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~v 288 (339)
T PRK08241 211 PDDPEERALLARYVAA--FEAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPTRANGQPA 288 (339)
T ss_pred CCChHHHHHHHHHHHH--HhcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEeecCCCeE
Confidence 5667777777888876 567774 77999999999999866 99999999999887443322234444445566666
Q ss_pred EEEEEEEEEecCCCCCeeEEEEEEEEEEeCCCCCEEEEEEeccCChhhHHHHHhcCCC
Q 041525 147 IGHWRFNCIMSFPWRPILSATGYTEYYFNAETGRVCRHVEHWNVPKMALFKQILRPSR 204 (212)
Q Consensus 147 ~~~W~m~~~lkLpw~p~i~v~G~S~l~fd~d~GkI~~HrDyWD~sa~~~l~q~f~p~~ 204 (212)
.+.+.. + .-+..+.+.|+..+++++ |||++-++|||. +.++++..|..
T Consensus 289 ~~~~~~----~-~~g~~~~~~~v~v~~v~d--GkI~~~~~y~d~---~~~~~~~~~~~ 336 (339)
T PRK08241 289 FAQYMR----D-PDGGGHRPWALHVLELRG--GRIAHVTSFLDT---TLFPRFGLPAT 336 (339)
T ss_pred EEEEEE----c-CCCCeeecceEEEEEEeC--CEEEEEEEEcCh---hhhhhcCCCCC
Confidence 664321 1 123457889999999985 999999999997 55677766653
No 9
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=98.25 E-value=1.9e-05 Score=70.21 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHhhhccCcCCCc--cccccCCCeEEeCCCC--cccchHHHHHHHHHH--hcccccceEEEeEeEEeCCe
Q 041525 72 DRATVVEAIKEDFARSYFVTGNI--TLDAYEEDCEFADPAG--SFKGLRRFKRNCTNF--GLLIDKSNMNLTRWDDFEDK 145 (212)
Q Consensus 72 ~~~~vl~~L~~dy~~~Yf~tg~~--~~~iY~~Dv~F~DP~~--~f~Gld~y~~~f~~L--~~~~~~~~f~l~~~~~~~~~ 145 (212)
..+...+.+.+.|+. +-+|++ +.+++++||+|.+|.. .+.|.+++...|..+ ...+...++ ......|+.
T Consensus 202 ~~~~~~~~v~~~~~a--~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~--~~~~~~g~~ 277 (324)
T TIGR02960 202 PSPEEQDLLERYIAA--FESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGAAGMRL--LPTIANGQP 277 (324)
T ss_pred CCHHHHHHHHHHHHH--HHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccCCceeE--EEeeecCCc
Confidence 344455666667765 567774 8899999999999984 499999999999988 545544444 444567788
Q ss_pred EEEEEEEEEEecCCCCCeeEEEEEEEEEEeCCCCCEEEEEEeccCChhhHH
Q 041525 146 GIGHWRFNCIMSFPWRPILSATGYTEYYFNAETGRVCRHVEHWNVPKMALF 196 (212)
Q Consensus 146 ~~~~W~m~~~lkLpw~p~i~v~G~S~l~fd~d~GkI~~HrDyWD~sa~~~l 196 (212)
+.+.|... +-+..+.+.|+..++|. + |||+....|||...+.+.
T Consensus 278 ~~v~~~~~-----~~~~~~~~~~v~~~~~~-d-GkI~~~~~~~~~~~~~~~ 321 (324)
T TIGR02960 278 AAAMYMRR-----PDAERHTAFQLHVLEIR-G-GRITHVTAFLDGPSLFAA 321 (324)
T ss_pred eEEEEEEc-----CCCCeeeeeEEEEEEEc-C-CcEEEEEEEcCCHHHHhh
Confidence 88776311 12345789999999995 4 999999999997766543
No 10
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=97.61 E-value=0.0011 Score=49.27 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhccCcCCC--ccccccCCCeEEeCCC--CcccchHHHHHHHHHHhcccccceEEEeEeE--EeCCeEEE
Q 041525 75 TVVEAIKEDFARSYFVTGN--ITLDAYEEDCEFADPA--GSFKGLRRFKRNCTNFGLLIDKSNMNLTRWD--DFEDKGIG 148 (212)
Q Consensus 75 ~vl~~L~~dy~~~Yf~tg~--~~~~iY~~Dv~F~DP~--~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~--~~~~~~~~ 148 (212)
++++.+.+-| -+++ .+.++|++|+.+.+|. ..++|.+++++++......+..+.+++.++. ..++.+++
T Consensus 3 ~~~~~~~~a~-----~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~ 77 (121)
T PF13474_consen 3 ALLEEWIEAF-----ERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVAVV 77 (121)
T ss_dssp HHHHHHHHHH-----HCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHH-----HhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEEEE
Confidence 3444444444 4555 5889999999999865 4668999999999988877778888877754 45677888
Q ss_pred EEEEEEEecCCCCCeeEEEEEEEEEEeCCCC--CEEEE
Q 041525 149 HWRFNCIMSFPWRPILSATGYTEYYFNAETG--RVCRH 184 (212)
Q Consensus 149 ~W~m~~~lkLpw~p~i~v~G~S~l~fd~d~G--kI~~H 184 (212)
...+++..+ ..+......+..++.|-.+.| ||+.|
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~r~t~v~~k~~~~Wki~h~ 114 (121)
T PF13474_consen 78 TGEFRLRFR-NDGEEIEMRGRATFVFRKEDGGWKIVHI 114 (121)
T ss_dssp EEEEEEEEE-CTTCEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEe-cCCccceeeEEEEEEEEEECCEEEEEEE
Confidence 777777665 333444555555555543324 55554
No 11
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=97.17 E-value=0.011 Score=44.56 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=48.2
Q ss_pred HHHHHHHhhhccCcCCC--ccccccCCCeEEeCCC-CcccchHHHHHHHHHHhccccc---ceEEEeEeEEeC-CeEEEE
Q 041525 77 VEAIKEDFARSYFVTGN--ITLDAYEEDCEFADPA-GSFKGLRRFKRNCTNFGLLIDK---SNMNLTRWDDFE-DKGIGH 149 (212)
Q Consensus 77 l~~L~~dy~~~Yf~tg~--~~~~iY~~Dv~F~DP~-~~f~Gld~y~~~f~~L~~~~~~---~~f~l~~~~~~~-~~~~~~ 149 (212)
++.+.+.|... +.+++ .+.++|++|+.|.++. ..++|++++..++..+...... ..+++..+...+ +.+.+.
T Consensus 6 i~~l~~~~~~a-~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~ 84 (128)
T TIGR02246 6 IRALVATWEAA-WAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVH 84 (128)
T ss_pred HHHHHHHHHHH-HHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEE
Confidence 34444444321 44555 4889999999999554 4679999999999877766543 355555666555 445444
Q ss_pred EEE
Q 041525 150 WRF 152 (212)
Q Consensus 150 W~m 152 (212)
...
T Consensus 85 ~~~ 87 (128)
T TIGR02246 85 AIQ 87 (128)
T ss_pred EEE
Confidence 333
No 12
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=97.12 E-value=0.0057 Score=49.36 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=82.8
Q ss_pred HHHHHHHhhhccCcCCCc--cccccCCCeEEeCCC------CcccchHHHHHHHHHHhcccccceEEEeEeEEeCCeEE-
Q 041525 77 VEAIKEDFARSYFVTGNI--TLDAYEEDCEFADPA------GSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGI- 147 (212)
Q Consensus 77 l~~L~~dy~~~Yf~tg~~--~~~iY~~Dv~F~DP~------~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~~- 147 (212)
.+.++..|+. +..|++ +..++++|+++.=|. .-.+|.+....+|..+-.++..+++++..+...++...
T Consensus 7 ~~~v~~~f~a--~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~gD~~~~ 84 (133)
T COG3631 7 TDLVRRYFAA--LSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSGDPVGA 84 (133)
T ss_pred hhHHHHHHHH--HhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEcCCceEE
Confidence 5566667766 556664 889999999998543 22357777788888888899999999999998887654
Q ss_pred EEEEEEEEecCCCCCeeEEEEEEEEEEeCCCCCEEEEEEeccCChhh
Q 041525 148 GHWRFNCIMSFPWRPILSATGYTEYYFNAETGRVCRHVEHWNVPKMA 194 (212)
Q Consensus 148 ~~W~m~~~lkLpw~p~i~v~G~S~l~fd~d~GkI~~HrDyWD~sa~~ 194 (212)
+.|.-....+ -+....-.=...+++.+ |||++-++|||.-+..
T Consensus 85 v~~~~~~~~~--~G~~~~~~~~~v~~vrd--GrI~~~~~y~D~~~~~ 127 (133)
T COG3631 85 VFRTRGRVSR--TGKPYENRYAFVIRVRD--GRITRYREYVDTLALA 127 (133)
T ss_pred EEEecCcccc--cCceeecceEEEEEEeC--CEEEEEEEEechHhHH
Confidence 5555433222 34456666677888887 9999999999976543
No 13
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=97.02 E-value=0.011 Score=48.20 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=62.9
Q ss_pred cccccCCCeEEeCCC-CcccchHHHHHHHHHHhcccc-cceEEEeEeE--EeCCeEEEEEEEEEEecCCCCCeeEEEEEE
Q 041525 95 TLDAYEEDCEFADPA-GSFKGLRRFKRNCTNFGLLID-KSNMNLTRWD--DFEDKGIGHWRFNCIMSFPWRPILSATGYT 170 (212)
Q Consensus 95 ~~~iY~~Dv~F~DP~-~~f~Gld~y~~~f~~L~~~~~-~~~f~l~~~~--~~~~~~~~~W~m~~~lkLpw~p~i~v~G~S 170 (212)
..+.|+|||+|-||. ..++|.+.|++.|..+...+. ...|++.++. +.|+.+++.=..++.-+.+.++...+.|.-
T Consensus 31 v~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~~~~~~~~~~~~~dg~~~~~~~Ra 110 (137)
T COG4319 31 VADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAFVTALLLLTGTKKDGPPADLAGRA 110 (137)
T ss_pred HHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEEEEEeeeeeccCCCCcchhheeee
Confidence 778899999999997 888999999999998888765 5688888877 677887764444444434566666677777
Q ss_pred EEEEe
Q 041525 171 EYYFN 175 (212)
Q Consensus 171 ~l~fd 175 (212)
++.|.
T Consensus 111 t~v~r 115 (137)
T COG4319 111 TYVFR 115 (137)
T ss_pred EEEEE
Confidence 77775
No 14
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=96.51 E-value=0.029 Score=40.34 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=54.7
Q ss_pred ccccccCCCeEEeCCCCcccchHHHHHHHHHHhcccccceEEEeEeEEeCCeEEEEEEEEEEecCCCCCeeEEEEEEEEE
Q 041525 94 ITLDAYEEDCEFADPAGSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGIGHWRFNCIMSFPWRPILSATGYTEYY 173 (212)
Q Consensus 94 ~~~~iY~~Dv~F~DP~~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~~~~W~m~~~lkLpw~p~i~v~G~S~l~ 173 (212)
.+.++|++|+.|..|.....|++.+.+.+..-..-....+++..++...++.+.+.=+++....- .+..+.+.|.....
T Consensus 19 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~gd~a~~~~~~~~~~~~-~g~~~~~~~~~~~v 97 (107)
T PF14534_consen 19 ALASLYADDFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVLGDTAVVRGRWTFTWRG-DGEPVTIRGRFTSV 97 (107)
T ss_dssp HHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEEEEEE
T ss_pred HHHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEECCEEEEEEEEEEEEec-CCceEEEEEEEEEE
Confidence 48899999999999999889999999888763333344455566666778877554333333332 33456666666665
Q ss_pred Ee
Q 041525 174 FN 175 (212)
Q Consensus 174 fd 175 (212)
|-
T Consensus 98 ~~ 99 (107)
T PF14534_consen 98 WK 99 (107)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 15
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=96.46 E-value=0.091 Score=37.84 Aligned_cols=92 Identities=10% Similarity=0.043 Sum_probs=58.8
Q ss_pred ccccccCCCeEEeCCC-----CcccchHHHHHHHHHHhcc-cccceEEEeEeE--EeCC----eEEEEEEEEEEecCCCC
Q 041525 94 ITLDAYEEDCEFADPA-----GSFKGLRRFKRNCTNFGLL-IDKSNMNLTRWD--DFED----KGIGHWRFNCIMSFPWR 161 (212)
Q Consensus 94 ~~~~iY~~Dv~F~DP~-----~~f~Gld~y~~~f~~L~~~-~~~~~f~l~~~~--~~~~----~~~~~W~m~~~lkLpw~ 161 (212)
.+..+|++|++|..|. ....|++++...+..+... .....+ +..+. ..++ .....|.+..... +
T Consensus 19 ~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 94 (124)
T cd00531 19 WLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHL-VSNVDVQPGDDGEGVVVSVFGVLRTRGD---G 94 (124)
T ss_pred HHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEE-EEeEEEEeCCCCEEEEEEEEEEEEEccC---C
Confidence 4889999999999998 6789999999999877652 111222 23332 2222 2345666655433 2
Q ss_pred CeeEEEEEEEEEEeC--CCCCEEEEEEecc
Q 041525 162 PILSATGYTEYYFNA--ETGRVCRHVEHWN 189 (212)
Q Consensus 162 p~i~v~G~S~l~fd~--d~GkI~~HrDyWD 189 (212)
....+.|.-...+.. ..+||...+.+||
T Consensus 95 ~~~~~~~~~~~~~~~~~g~w~i~~~~~~~~ 124 (124)
T cd00531 95 EQDVFAGGQTFVLRPQGGGGKIANRRFRLD 124 (124)
T ss_pred ceeEEEEEEEEEEEEeCCEEEEEEEEEecC
Confidence 345566666666653 1269999988886
No 16
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.01 E-value=0.19 Score=40.41 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHhhhccCcCCC-ccccccCCCeEEeCC-CCcccchHHHHHHHHHHhcccccceEEEeEeEEeCCeEEEE
Q 041525 72 DRATVVEAIKEDFARSYFVTGN-ITLDAYEEDCEFADP-AGSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGIGH 149 (212)
Q Consensus 72 ~~~~vl~~L~~dy~~~Yf~tg~-~~~~iY~~Dv~F~DP-~~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~~~~ 149 (212)
+..++++.|.+-+++ ..++ -...+..+|-+...| +..++|.+.-...+.--..-...-.|+|+.+...++.+..+
T Consensus 7 ~pi~~V~aF~aA~~~---~d~~~avr~~~~~d~v~~n~gis~i~G~~~~ia~l~~~~~~~~~~ef~I~riAadg~~VltE 83 (130)
T COG4308 7 EPIRTVEAFLAALQE---DDGDAAVRRLGTPDTVYNNVGISTIHGPAETIALLRPRMAGILGFEFKILRIAADGGAVLTE 83 (130)
T ss_pred CcHHHHHHHHHHHHh---cCccHHHHHhcCCCeeeccCCcccccchhhhhhhhccccCCcceeEEEEEEEecccceehhh
Confidence 345667777777776 4444 466777677777765 68899999888776621122223478889887666554321
Q ss_pred EEEEEEecCCCCCe-eEEEEEEEEEEeCCCCCEEEEEEeccCChh
Q 041525 150 WRFNCIMSFPWRPI-LSATGYTEYYFNAETGRVCRHVEHWNVPKM 193 (212)
Q Consensus 150 W~m~~~lkLpw~p~-i~v~G~S~l~fd~d~GkI~~HrDyWD~sa~ 193 (212)
|+. . ..-+|. ..+.-|-.|+..+ |||..-|||+|+-.+
T Consensus 84 -R~D-~--~~~g~~~~~~~V~GvfEV~~--~rI~~WRDYFDv~~l 122 (130)
T COG4308 84 -RLD-A--RIDGPLWVQFWVCGVFEVED--GRIVLWRDYFDVNDL 122 (130)
T ss_pred -hhh-h--hccCCcEEEEEEEEEEEEeC--CEEEeehhhhhHHHH
Confidence 222 1 223333 2355555566665 899999999998655
No 17
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=94.98 E-value=0.086 Score=42.48 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=68.6
Q ss_pred cCCCeEEeCCCCcccchHHHHHHHHHHhcccccceEEEeEeEEeCCeEEEEEEEEEEec-----C-CCCCeeEEEEEEEE
Q 041525 99 YEEDCEFADPAGSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGIGHWRFNCIMS-----F-PWRPILSATGYTEY 172 (212)
Q Consensus 99 Y~~Dv~F~DP~~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~~~~W~m~~~lk-----L-pw~p~i~v~G~S~l 172 (212)
+-+||++- .++..|++.|..++..++.-+-+-+|++......++.+..+=.|.|.++ + |.++.+.+.-..-|
T Consensus 30 fv~~~v~~--ng~~~glsgyr~ml~~df~aiPdl~f~ie~lvae~~~vaarl~Fdctp~G~i~Gip~nGkrV~Fse~vfy 107 (131)
T COG5485 30 FVDGNVMH--NGRLQGLSGYREMLVRDFSAIPDLSFEIERLVAEGDRVAARLTFDCTPSGEIMGIPPNGKRVRFSENVFY 107 (131)
T ss_pred CCcCeeee--CCceechHHHHHHHHhhHhhCCCcceEEEEEeecCCceEEEEEEccCcCceEeccCCCCcEEEeehhhhh
Confidence 45556654 3577899999999999999999999999999999999988888888763 1 45556777666667
Q ss_pred EEeCCCCCEEEEEEeccCC
Q 041525 173 YFNAETGRVCRHVEHWNVP 191 (212)
Q Consensus 173 ~fd~d~GkI~~HrDyWD~s 191 (212)
+|-+ |||++|.=..|..
T Consensus 108 ~f~~--~KI~~vwsv~Dk~ 124 (131)
T COG5485 108 EFEN--GKIVEVWSVIDKM 124 (131)
T ss_pred hhcC--CeEEeeehhccHH
Confidence 7765 8999886555543
No 18
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=92.13 E-value=2.3 Score=31.62 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=53.6
Q ss_pred HHHHHHHhhhccCcCCC--ccccccCCCeEEeCCC---CcccchHHHHHHHHHHhcccccceEEEeE--eEEeCCeEEEE
Q 041525 77 VEAIKEDFARSYFVTGN--ITLDAYEEDCEFADPA---GSFKGLRRFKRNCTNFGLLIDKSNMNLTR--WDDFEDKGIGH 149 (212)
Q Consensus 77 l~~L~~dy~~~Yf~tg~--~~~~iY~~Dv~F~DP~---~~f~Gld~y~~~f~~L~~~~~~~~f~l~~--~~~~~~~~~~~ 149 (212)
+..+...|.. ++-+++ ...++|++|++|.=|- ..++|++++.+.+..........+--+.. +...++.+.++
T Consensus 9 I~~l~~~~~~-~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dgd~A~~~ 87 (127)
T PF13577_consen 9 IRDLIARYAR-ALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDGDTATVR 87 (127)
T ss_dssp HHHHHHHHHH-HHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHH-HhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcCCEEEEE
Confidence 4444444443 123333 5789999999997664 58999999999998775433332222222 33467889999
Q ss_pred EEEEEEecCCC
Q 041525 150 WRFNCIMSFPW 160 (212)
Q Consensus 150 W~m~~~lkLpw 160 (212)
|.+...+..+.
T Consensus 88 ~~~~~~~~~~~ 98 (127)
T PF13577_consen 88 SYVLATHRDPD 98 (127)
T ss_dssp EEEEEEEEEET
T ss_pred EEEEEEEEEcC
Confidence 99998864333
No 19
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=91.48 E-value=2 Score=38.02 Aligned_cols=97 Identities=11% Similarity=0.026 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhhccCcCCC--ccccccCCCeEEe-CCC-------CcccchHHHHHHHHHHhccccc-ceEEEeEeEEe
Q 041525 74 ATVVEAIKEDFARSYFVTGN--ITLDAYEEDCEFA-DPA-------GSFKGLRRFKRNCTNFGLLIDK-SNMNLTRWDDF 142 (212)
Q Consensus 74 ~~vl~~L~~dy~~~Yf~tg~--~~~~iY~~Dv~F~-DP~-------~~f~Gld~y~~~f~~L~~~~~~-~~f~l~~~~~~ 142 (212)
+.-.+.+.+++.. |-.|+ -+.+++++||+|. |+- ..+.|.++..+.|..+...+.. ....+.-...+
T Consensus 171 ~~~~~~v~~f~~A--~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~~~~vn 248 (293)
T PRK09636 171 EEGAELVEAFFAA--LASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVRLALVN 248 (293)
T ss_pred hHHHHHHHHHHHH--HHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEEEEEEC
Confidence 3334444444444 45666 4889999999999 653 4478999999998888765543 22344334456
Q ss_pred CCeEEEEEEEEEEecCCCCCeeEEEEEEEEEEeCCCCCEEEEE
Q 041525 143 EDKGIGHWRFNCIMSFPWRPILSATGYTEYYFNAETGRVCRHV 185 (212)
Q Consensus 143 ~~~~~~~W~m~~~lkLpw~p~i~v~G~S~l~fd~d~GkI~~Hr 185 (212)
|+.+.+. ... +.. .+...+.+++ |+|..=.
T Consensus 249 G~~a~~~-~~~-------~~~---~~~~~~~~~~--g~I~~i~ 278 (293)
T PRK09636 249 GLPGFVT-AEA-------DGE---PQTTALEVED--GKIVAIY 278 (293)
T ss_pred CceeEEE-EeC-------Cce---EEEEEEEEEC--CEEEEEE
Confidence 6655443 211 111 4455556654 8887633
No 20
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=90.66 E-value=1.9 Score=32.32 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=56.6
Q ss_pred HHHHHhhhccCcCCC--ccccccCCCeEEeCCCCc--ccchHHHHHHHHHHhcccccceEEEeEeEEe--C-CeEEEEEE
Q 041525 79 AIKEDFARSYFVTGN--ITLDAYEEDCEFADPAGS--FKGLRRFKRNCTNFGLLIDKSNMNLTRWDDF--E-DKGIGHWR 151 (212)
Q Consensus 79 ~L~~dy~~~Yf~tg~--~~~~iY~~Dv~F~DP~~~--f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~--~-~~~~~~W~ 151 (212)
-+++.|+. |..++ .+..+|++|+.+.++... +.|++++.+.+..|-... +++++..+..+ . ....+-+.
T Consensus 5 Fv~~Yy~~--~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~--~~~~i~~~d~qp~~~~~~~i~i~ 80 (118)
T PF02136_consen 5 FVQQYYQL--FDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATG--VQHRITSVDCQPSPSSDGSILIT 80 (118)
T ss_dssp HHHHHHHH--HHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSS--EEEEEEEEEEEEEEECCSEEEEE
T ss_pred HHHHHHHH--HccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcc--cEEEecccccccccccCCcEEEE
Confidence 34455555 22223 589999999999999877 999999999998886654 47788777765 2 33345667
Q ss_pred EEEEecCCCCC
Q 041525 152 FNCIMSFPWRP 162 (212)
Q Consensus 152 m~~~lkLpw~p 162 (212)
+++.++....+
T Consensus 81 v~G~~~~~~~~ 91 (118)
T PF02136_consen 81 VTGQFKEDDNP 91 (118)
T ss_dssp EEEEEEETTSE
T ss_pred EEeEEEecCCC
Confidence 88877755554
No 21
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=83.63 E-value=17 Score=27.59 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=55.1
Q ss_pred HHHHHHHHHHh-hhccCcCCC--ccccccCCCeEEeCCC-CcccchHHHHHHHHHHhcccccceEEEeEeEEeC---CeE
Q 041525 74 ATVVEAIKEDF-ARSYFVTGN--ITLDAYEEDCEFADPA-GSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFE---DKG 146 (212)
Q Consensus 74 ~~vl~~L~~dy-~~~Yf~tg~--~~~~iY~~Dv~F~DP~-~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~---~~~ 146 (212)
+++...|.+.| .. +..+ .+..+|+++..|.=+- +.+.|.+.+...+..|.. +.+..++.++..+. +.+
T Consensus 3 ~~v~~~Fv~~YY~~---l~~~~~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~--~~~~~~i~~~d~q~~~~~~i 77 (119)
T cd00780 3 EDVAKAFVQQYYSI---FDNNREGLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPF--QKTKHKITTVDSQPTPSGGV 77 (119)
T ss_pred HHHHHHHHHHHHHH---HhcCHHHHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCC--cceEEEEEEEeeeEcCCCCE
Confidence 44445555544 44 4444 5889999999999887 899999999998877654 35666666654332 333
Q ss_pred EEEEEEEEEecCCCCCeeEEEE
Q 041525 147 IGHWRFNCIMSFPWRPILSATG 168 (212)
Q Consensus 147 ~~~W~m~~~lkLpw~p~i~v~G 168 (212)
.+ .+++.++....+...+.-
T Consensus 78 li--~V~G~~~~~~~~~~~F~q 97 (119)
T cd00780 78 IV--MVTGSLKLDEQPPRKFSQ 97 (119)
T ss_pred EE--EEEEEEEECCCCceeEeE
Confidence 33 455555443333333333
No 22
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.20 E-value=13 Score=29.99 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHHHhcccccceEEEeEeEEeCCeEEEEEEEEEEecCCCCCeeEEEEEEEEEEeCCCCCEEEE
Q 041525 112 FKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFEDKGIGHWRFNCIMSFPWRPILSATGYTEYYFNAETGRVCRH 184 (212)
Q Consensus 112 f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~~~~~~~W~m~~~lkLpw~p~i~v~G~S~l~fd~d~GkI~~H 184 (212)
-.|.+.|.++|+.+++---..+..|......|+-+++.- +-..+-|. .-...-+-++++++ |||.+|
T Consensus 43 pdGk~~fv~fFt~ffk~~P~~~~kiVr~iadGdLV~vh~--hqt~~~pg--~~~~v~~DtfR~dd--gkivEH 109 (129)
T COG4922 43 PDGKDGFVRFFTEFFKEKPRISTKIVRVIADGDLVTVHY--HQTVSEPG--SYTTVTFDTFRIDD--GKIVEH 109 (129)
T ss_pred CCchHHHHHHHHHHHHhCccccceeeEEeccCCEEEEEE--eeeeCCCC--cceeEEEEEEEeeC--Cceeec
Confidence 469999999999887654445566776666777776532 22222222 12233345566766 899877
No 23
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=80.32 E-value=0.36 Score=46.18 Aligned_cols=85 Identities=7% Similarity=-0.056 Sum_probs=62.7
Q ss_pred ccccccCCCeEEeCCCCcccchHHHHHHHHHHhcc----cccceEEEeEeEEeCCeEEEEEEEEEEecCCCCCeeEEEEE
Q 041525 94 ITLDAYEEDCEFADPAGSFKGLRRFKRNCTNFGLL----IDKSNMNLTRWDDFEDKGIGHWRFNCIMSFPWRPILSATGY 169 (212)
Q Consensus 94 ~~~~iY~~Dv~F~DP~~~f~Gld~y~~~f~~L~~~----~~~~~f~l~~~~~~~~~~~~~W~m~~~lkLpw~p~i~v~G~ 169 (212)
..-++|+.+|.|.|+.+.+++|..|..|+..+... .......+..+..-=+..+++|.-|+. +.+|.++-..+|+
T Consensus 90 s~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkPid~~mLd~igHGI-r~~~~~rg~~~g~ 168 (483)
T KOG2546|consen 90 SQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKPIDYSMLDDIGHGI-RGSWETRGRFDGT 168 (483)
T ss_pred hhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceeccccceeeecccccc-ccccccccCcCcc
Confidence 35689999999999999999999999987644431 122222333333333467899999998 7778888889999
Q ss_pred EEEEEeCCCCC
Q 041525 170 TEYYFNAETGR 180 (212)
Q Consensus 170 S~l~fd~d~Gk 180 (212)
++..|+.. |+
T Consensus 169 ~t~~l~rs-~p 178 (483)
T KOG2546|consen 169 STGKLSRS-GP 178 (483)
T ss_pred cccccCCC-CC
Confidence 99999874 53
No 24
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=79.85 E-value=35 Score=28.56 Aligned_cols=93 Identities=13% Similarity=-0.026 Sum_probs=59.4
Q ss_pred ccccCCCeEEeCCC------CcccchHHHHHHHHHHhcccccceEEEeEeEEeC--CeEEEEEEEEEEecCCCCCeeEEE
Q 041525 96 LDAYEEDCEFADPA------GSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFE--DKGIGHWRFNCIMSFPWRPILSAT 167 (212)
Q Consensus 96 ~~iY~~Dv~F~DP~------~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~--~~~~~~W~m~~~lkLpw~p~i~v~ 167 (212)
.++|++|=.=--++ .-++|.+++.+.-..+.+-|-+-...-..+.+++ +...+.=+=++...+|.-|....+
T Consensus 39 h~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFPDWeW~nv~ifeT~DP~~fwVEcdG~G~i~fpGypeg~y~ 118 (162)
T PF03284_consen 39 HELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFPDWEWYNVRIFETQDPNHFWVECDGRGKILFPGYPEGYYE 118 (162)
T ss_dssp GGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHSTT-EEEEEEEEEBSSTTEEEEEEEEEEEE--TTS--EEEE
T ss_pred heeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCCCcEEEEEEeecccCCCEEEEEecCccceecCCCCcccce
Confidence 47888886654444 3479999999976666666655444444444433 467788888888888998876655
Q ss_pred EEE--EEEEeCCCCCEEEEEEeccC
Q 041525 168 GYT--EYYFNAETGRVCRHVEHWNV 190 (212)
Q Consensus 168 G~S--~l~fd~d~GkI~~HrDyWD~ 190 (212)
-.= -++|++ |||.+.|||.|.
T Consensus 119 NHfiHsFel~n--GkI~~~REFmNp 141 (162)
T PF03284_consen 119 NHFIHSFELEN--GKIKRNREFMNP 141 (162)
T ss_dssp EEEEEEEEEET--TEEEEEEEEE-H
T ss_pred eeeEEEEEeeC--CEEEeehhhcCH
Confidence 433 345554 999999999875
No 25
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=70.02 E-value=19 Score=27.21 Aligned_cols=81 Identities=10% Similarity=0.082 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhhccCcCCC--ccccccCCCeEE---eCCCCcccchHHHHHHHHHH---hcccccceEEEeEeEEeCC
Q 041525 73 RATVVEAIKEDFARSYFVTGN--ITLDAYEEDCEF---ADPAGSFKGLRRFKRNCTNF---GLLIDKSNMNLTRWDDFED 144 (212)
Q Consensus 73 ~~~vl~~L~~dy~~~Yf~tg~--~~~~iY~~Dv~F---~DP~~~f~Gld~y~~~f~~L---~~~~~~~~f~l~~~~~~~~ 144 (212)
.+++.+.+...++. +-+|+ .+..+|++|+.. .+.-.....++.|...+..- ...-.++...+..+...++
T Consensus 3 ~~~I~~~v~~Y~dg--~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g~ 80 (116)
T PF12893_consen 3 EAAIEATVQDYFDG--LYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDGD 80 (116)
T ss_dssp HHHHHHHHHHHHHH--HHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHH--HHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEECC
Confidence 34555666665554 23455 689999999965 23336777889998888765 3456678899999999999
Q ss_pred eEEEEEEEEEE
Q 041525 145 KGIGHWRFNCI 155 (212)
Q Consensus 145 ~~~~~W~m~~~ 155 (212)
.+.++=++.+.
T Consensus 81 ~A~a~v~~~~~ 91 (116)
T PF12893_consen 81 VASAKVEYEFP 91 (116)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEC
Confidence 88775555553
No 26
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=68.97 E-value=58 Score=26.06 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=40.1
Q ss_pred cccccCCCeEEeCCC---CcccchHHHHHHHHHHhcccc-cceEEEeEeE--Ee-CCeEEEEEEEEEEec
Q 041525 95 TLDAYEEDCEFADPA---GSFKGLRRFKRNCTNFGLLID-KSNMNLTRWD--DF-EDKGIGHWRFNCIMS 157 (212)
Q Consensus 95 ~~~iY~~Dv~F~DP~---~~f~Gld~y~~~f~~L~~~~~-~~~f~l~~~~--~~-~~~~~~~W~m~~~lk 157 (212)
-..+|++||.--.|+ +-+.|++..+.||.++...=. ..+..|.+.. .- ++.+...-.-.+.+.
T Consensus 24 ~~~ly~~d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~~~Ai~~gvy~f~~~ 93 (128)
T PF08332_consen 24 YAKLYAPDVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGDNAAIDAGVYTFQFV 93 (128)
T ss_dssp HHHHEEEEEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEESTTEEEEEEEEEEEEE
T ss_pred HhhhcCCCeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCCCEEEEeeEEEEEee
Confidence 678999996655666 457999999999997665421 2233455433 22 446666555555543
No 27
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=57.42 E-value=91 Score=24.36 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=57.1
Q ss_pred ccCCHHHHHHHHHHHhhhccCcCCCccccccCCCe---EEeC-CCCcccchHHHHHHHHHHhcccccceEEEeEeEEeC-
Q 041525 69 AELDRATVVEAIKEDFARSYFVTGNITLDAYEEDC---EFAD-PAGSFKGLRRFKRNCTNFGLLIDKSNMNLTRWDDFE- 143 (212)
Q Consensus 69 ~~~~~~~vl~~L~~dy~~~Yf~tg~~~~~iY~~Dv---~F~D-P~~~f~Gld~y~~~f~~L~~~~~~~~f~l~~~~~~~- 143 (212)
...+..++.+.++++... +++-..-.....+|. .|.| ++..-.....+.+.+......++ ||++..++...+
T Consensus 19 ~~~~~~~l~~sI~~~L~~--LLnTr~g~~~~~~~yGl~d~~~~~~~~~~~~~~i~~~I~~aI~r~E-PRl~~~~V~~~~~ 95 (133)
T TIGR03357 19 RRSSAEQLRESIRRHLER--LLNTRRGSCASLPDYGLPDLNDLSLSSADDRRRIRRAIEQAIERYE-PRLSSVRVTALED 95 (133)
T ss_pred ccCCHHHHHHHHHHHHHH--HHccCCCccccccccCCcccccccccCHHHHHHHHHHHHHHHHhcC-CCcCceEEEEecC
Confidence 446778888888888776 333332222222222 3443 33333344456666655555554 677777766542
Q ss_pred --CeEEEEEEEEEEecCCCCC-eeEEEEEEEEEEeCCCCCE
Q 041525 144 --DKGIGHWRFNCIMSFPWRP-ILSATGYTEYYFNAETGRV 181 (212)
Q Consensus 144 --~~~~~~W~m~~~lkLpw~p-~i~v~G~S~l~fd~d~GkI 181 (212)
....+.+.+++.++....+ .+.++-. +|. +|++
T Consensus 96 ~~~~~~l~f~I~~~l~~~~~~~~l~f~~~----ld~-~g~~ 131 (133)
T TIGR03357 96 EEDPLALRFRIEAELDVDGGPEPVSFDAL----LDG-SGRY 131 (133)
T ss_pred CCCccEEEEEEEEEEEeCCCCccEEEEEE----ECC-CCcE
Confidence 3457888888888743332 4444433 553 3665
No 28
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=44.11 E-value=1.8e+02 Score=23.97 Aligned_cols=106 Identities=13% Similarity=0.207 Sum_probs=68.5
Q ss_pred ccCCHHHHHHHHHH--HhhhccCcCCC--ccccccCCCeEEeCCCCcccchHHHHHHHHHHhcccccceEEEeE--eEEe
Q 041525 69 AELDRATVVEAIKE--DFARSYFVTGN--ITLDAYEEDCEFADPAGSFKGLRRFKRNCTNFGLLIDKSNMNLTR--WDDF 142 (212)
Q Consensus 69 ~~~~~~~vl~~L~~--dy~~~Yf~tg~--~~~~iY~~Dv~F~DP~~~f~Gld~y~~~f~~L~~~~~~~~f~l~~--~~~~ 142 (212)
.|.+.+.++++++. |-=+ +.+ ...-.|++|++..+=..=++|++.+...|+. +.-.+....|.+ +.-.
T Consensus 5 PPFt~etA~~KVr~AEdaWN----srdP~~ValaYT~Ds~WRNR~eF~~GR~~I~~FLtr--KW~rE~~YrLiKELwaf~ 78 (143)
T PF07080_consen 5 PPFTRETAIQKVRAAEDAWN----SRDPEKVALAYTPDSVWRNRDEFLTGREEIVAFLTR--KWERELDYRLIKELWAFT 78 (143)
T ss_dssp SS--HHHHHHHHHHHHHHHT----TT-HHHHHTTEEEEEEEEETTEEE-SHHHHHHHHHH--HHHHSEEEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhccc----cCChhHheeccCCCCcccCcccccCcHHHHHHHHHH--HHHHhhhhhhHHhhhhcc
Confidence 35777887776665 3322 333 4667999999999999999999999987653 333344455544 4567
Q ss_pred CCeEEEEEEEEEEecCCCCCeeEEEEEEEEEEeCCCCCEEE
Q 041525 143 EDKGIGHWRFNCIMSFPWRPILSATGYTEYYFNAETGRVCR 183 (212)
Q Consensus 143 ~~~~~~~W~m~~~lkLpw~p~i~v~G~S~l~fd~d~GkI~~ 183 (212)
++.+.++....+.-. -+.=..--|.-...||++ |+...
T Consensus 79 ~nRIAVRF~YE~~d~--~gqW~RsyGnEnWeFd~~-GlM~~ 116 (143)
T PF07080_consen 79 DNRIAVRFAYEWHDD--SGQWFRSYGNENWEFDED-GLMRR 116 (143)
T ss_dssp TTEEEEEEEEEEE-T--TS-EEEEEEEEEEEE-TT-S-EEE
T ss_pred CCeEEEEEeEEEEcC--CCCEEecccccccccCCC-ccHHH
Confidence 899988766666532 233356789999999997 87654
No 29
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=43.45 E-value=9.3 Score=32.94 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=7.9
Q ss_pred EEEEEEeccCChh
Q 041525 181 VCRHVEHWNVPKM 193 (212)
Q Consensus 181 I~~HrDyWD~sa~ 193 (212)
+.+|+||||--.|
T Consensus 32 LafHVDYWDylGW 44 (202)
T PF06764_consen 32 LAFHVDYWDYLGW 44 (202)
T ss_dssp EEEE-STT-SSSS
T ss_pred EEecCCcccCCCC
Confidence 4689999997443
No 30
>PF08830 DUF1806: Protein of unknown function (DUF1806); InterPro: IPR014934 This entry consists of bacterial uncharacterised proteins. The structure of one of the proteins has been solved and it adopts a beta barrel-like structure. ; PDB: 1NJH_A.
Probab=41.98 E-value=78 Score=25.19 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=28.1
Q ss_pred cccccceEEEeEeEEeCCeEEEEEEEEEEecCCCCCeeEEEEEEEEEEeCCCCCE
Q 041525 127 LLIDKSNMNLTRWDDFEDKGIGHWRFNCIMSFPWRPILSATGYTEYYFNAETGRV 181 (212)
Q Consensus 127 ~~~~~~~f~l~~~~~~~~~~~~~W~m~~~lkLpw~p~i~v~G~S~l~fd~d~GkI 181 (212)
.++.+..+....-...++. -.|+..++..-| +-++|.|+|.+|++ |+.
T Consensus 44 afiRNa~i~ye~g~i~G~g---PyRvGLK~~~GW---vYaEGLTh~e~d~~-~rL 91 (114)
T PF08830_consen 44 AFIRNAKIRYEHGKIKGDG---PYRVGLKLEIGW---VYAEGLTHYEVDEE-GRL 91 (114)
T ss_dssp EEEEEEEE-EEEEEEESSS---SEEEEEEESSSE---EEEEEE-EEEE-TT---E
T ss_pred hEEEeeEEEEEEeEEEcCC---CeEEEEecCCCE---EEEccceeeEEcCC-CcE
Confidence 4555555555554444443 456666666555 78999999999987 653
No 31
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=24.39 E-value=4.8e+02 Score=22.79 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=29.7
Q ss_pred cCCCc--cccccCCCeEEe-C-----CC--CcccchHHHHHHHHHHhcc
Q 041525 90 VTGNI--TLDAYEEDCEFA-D-----PA--GSFKGLRRFKRNCTNFGLL 128 (212)
Q Consensus 90 ~tg~~--~~~iY~~Dv~F~-D-----P~--~~f~Gld~y~~~f~~L~~~ 128 (212)
-.|++ +..+.++||+|. | |. +-+.|.++..+++..+...
T Consensus 178 ~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~ 226 (281)
T TIGR02957 178 QTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRR 226 (281)
T ss_pred HhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcc
Confidence 35663 889999999999 4 33 3489999999988776653
No 32
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=20.49 E-value=1.1e+02 Score=30.43 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=32.0
Q ss_pred EEEEEEEEEe--------cCCCCCeeEEEEEEEEEEeCCCCCEEEEEEeccCChhhH
Q 041525 147 IGHWRFNCIM--------SFPWRPILSATGYTEYYFNAETGRVCRHVEHWNVPKMAL 195 (212)
Q Consensus 147 ~~~W~m~~~l--------kLpw~p~i~v~G~S~l~fd~d~GkI~~HrDyWD~sa~~~ 195 (212)
+..|++-+++ +|+.+| .|++.+.+ |+|+--|+++|++-|..
T Consensus 151 F~q~~~lYkv~~dg~~~e~LnlGp------athiv~~d--g~ivigRntydLP~WK~ 199 (668)
T COG4946 151 FSQWTELYKVNVDGIKTEPLNLGP------ATHIVIKD--GIIVIGRNTYDLPHWKG 199 (668)
T ss_pred cccceeeeEEccCCceeeeccCCc------eeeEEEeC--CEEEEccCcccCccccc
Confidence 4578888876 355555 68888877 89999999999987754
Done!