AT1G55930 protein (Arabidopsis thaliana)

STRING 9.05

AT1G55930 protein (Arabidopsis thaliana) - STRING network view

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	AT1G55930	CBS domain-containing protein / transporter associated domain-containing protein; CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF21 (InterPro-IPR002550), Transporter-associated region (InterPro-IPR005170), Cystathionine beta-synthase, core (InterPro-IPR000644); BEST Arabidopsis thaliana protein match is- CBS domain-co [...] (653 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G66470	GTP binding / RNA binding; GTP binding / RNA binding; FUNCTIONS IN- RNA binding, GTP binding; L [...] (427 aa)	•	•	0.647
	AT4G19610	RNA binding / nucleic acid binding / nucleotide binding; RNA binding / nucleic acid binding / n [...] (816 aa)		•	0.526
	AT1G26660	c-myc binding protein, putative / prefoldin, putative; c-myc binding protein, putative / prefol [...] (152 aa)		•	0.502
	AT1G44910	protein binding; protein binding; FUNCTIONS IN- protein binding; INVOLVED IN- biological_proces [...] (958 aa)		•	0.484
	AT3G52140	tetratricopeptide repeat (TPR)-containing protein; tetratricopeptide repeat (TPR)-containing pr [...] (1403 aa)		•	0.469
	OXA1	OXA1; P-P-bond-hydrolysis-driven protein transmembrane transporter; essential factor for protei [...] (429 aa)		•	0.458
	AT1G76120	tRNA pseudouridine synthase family protein; tRNA pseudouridine synthase family protein; FUNCTIO [...] (463 aa)		•	0.458
	DCL4	DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III; Encodes an RNase III-lik [...] (1702 aa)		•	0.457
	AT1G53350	ATP binding; ATP binding; FUNCTIONS IN- ATP binding; INVOLVED IN- defense response, apoptosis; [...] (927 aa)		•	0.436
	PRMT4A	PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A); [myelin basic protein]-arginine N-methyltransfe [...] (528 aa)		•	0.432

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes

Server load: medium (43%)

Permalink