Query 041526
Match_columns 252
No_of_seqs 294 out of 2197
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11573 hypothetical protein; 100.0 2.4E-43 5.3E-48 335.2 21.0 183 1-217 223-405 (413)
2 COG4535 CorC Putative Mg2+ and 100.0 9.1E-42 2E-46 298.2 14.8 183 1-219 103-285 (293)
3 PRK15094 magnesium/cobalt effl 100.0 2.1E-40 4.6E-45 302.3 21.7 180 1-216 103-282 (292)
4 COG1253 TlyC Hemolysins and re 100.0 1.8E-40 3.9E-45 316.8 20.5 184 1-219 242-425 (429)
5 TIGR03520 GldE gliding motilit 100.0 4.3E-40 9.4E-45 312.5 21.7 177 1-215 227-407 (408)
6 COG4536 CorB Putative Mg2+ and 100.0 3.2E-40 7E-45 304.0 15.8 185 1-220 236-420 (423)
7 PF03471 CorC_HlyC: Transporte 99.8 1.2E-18 2.5E-23 130.4 10.4 79 112-216 2-80 (81)
8 TIGR01302 IMP_dehydrog inosine 99.2 3.7E-11 8E-16 116.0 10.9 106 1-127 114-222 (450)
9 cd04593 CBS_pair_EriC_assoc_ba 99.2 1.2E-10 2.6E-15 89.6 9.3 87 1-88 27-115 (115)
10 cd04631 CBS_pair_18 The CBS do 99.1 3.4E-10 7.5E-15 88.0 9.8 87 1-87 27-124 (125)
11 cd04623 CBS_pair_10 The CBS do 99.1 3.7E-10 8.1E-15 85.7 9.7 85 1-87 27-112 (113)
12 COG2524 Predicted transcriptio 99.1 2.5E-10 5.5E-15 101.9 9.9 88 1-92 206-293 (294)
13 cd04630 CBS_pair_17 The CBS do 99.1 3.5E-10 7.6E-15 87.0 9.5 86 1-87 27-113 (114)
14 cd04624 CBS_pair_11 The CBS do 99.1 3.5E-10 7.5E-15 86.3 9.3 86 1-88 27-112 (112)
15 cd04613 CBS_pair_SpoIVFB_EriC_ 99.1 4.9E-10 1.1E-14 85.2 9.4 86 1-87 27-113 (114)
16 cd04615 CBS_pair_2 The CBS dom 99.1 5.6E-10 1.2E-14 85.2 9.3 86 1-87 27-112 (113)
17 cd04600 CBS_pair_HPP_assoc Thi 99.1 5.8E-10 1.3E-14 86.5 9.1 86 1-87 28-123 (124)
18 cd04611 CBS_pair_PAS_GGDEF_DUF 99.1 9.9E-10 2.1E-14 83.3 9.8 84 1-87 27-110 (111)
19 cd04639 CBS_pair_26 The CBS do 99.1 1.1E-09 2.4E-14 83.4 9.9 84 1-87 27-110 (111)
20 cd04620 CBS_pair_7 The CBS dom 99.1 1.1E-09 2.4E-14 84.0 9.6 84 2-87 29-114 (115)
21 cd04605 CBS_pair_MET2_assoc Th 99.1 1.3E-09 2.8E-14 82.9 9.8 82 1-87 28-109 (110)
22 cd04607 CBS_pair_NTP_transfera 99.1 1.3E-09 2.8E-14 83.6 9.9 85 1-87 28-112 (113)
23 cd04588 CBS_pair_CAP-ED_DUF294 99.1 1.6E-09 3.4E-14 82.4 9.8 83 1-87 27-109 (110)
24 cd04803 CBS_pair_15 The CBS do 99.0 2E-09 4.4E-14 83.2 10.0 86 1-87 27-121 (122)
25 cd04590 CBS_pair_CorC_HlyC_ass 99.0 2E-09 4.4E-14 81.9 9.5 85 1-88 27-111 (111)
26 cd04604 CBS_pair_KpsF_GutQ_ass 99.0 2.2E-09 4.8E-14 81.7 9.7 86 1-87 28-113 (114)
27 cd04800 CBS_pair_CAP-ED_DUF294 99.0 2E-09 4.3E-14 81.9 9.3 84 1-87 27-110 (111)
28 cd04641 CBS_pair_28 The CBS do 99.0 1.7E-09 3.7E-14 84.0 9.0 86 1-87 27-119 (120)
29 cd04612 CBS_pair_SpoIVFB_EriC_ 99.0 2.9E-09 6.3E-14 80.7 10.1 84 1-87 27-110 (111)
30 cd04619 CBS_pair_6 The CBS dom 99.0 2.3E-09 5E-14 82.7 9.6 86 1-87 27-113 (114)
31 cd04589 CBS_pair_CAP-ED_DUF294 99.0 2.3E-09 5E-14 81.7 9.5 84 1-87 27-110 (111)
32 cd04626 CBS_pair_13 The CBS do 99.0 2E-09 4.4E-14 82.1 8.9 84 1-87 27-110 (111)
33 cd04595 CBS_pair_DHH_polyA_Pol 99.0 2.7E-09 5.8E-14 81.2 9.5 82 1-87 28-109 (110)
34 cd04627 CBS_pair_14 The CBS do 99.0 2E-09 4.3E-14 84.0 8.9 86 1-86 27-121 (123)
35 cd04636 CBS_pair_23 The CBS do 99.0 2.5E-09 5.5E-14 84.6 9.6 85 1-87 27-131 (132)
36 cd04801 CBS_pair_M50_like This 99.0 2E-09 4.3E-14 82.6 8.6 84 1-87 28-113 (114)
37 cd04617 CBS_pair_4 The CBS dom 99.0 3.1E-09 6.8E-14 82.4 9.4 86 1-87 27-117 (118)
38 cd04585 CBS_pair_ACT_assoc2 Th 99.0 3.7E-09 8E-14 81.1 9.6 85 1-87 27-121 (122)
39 cd04642 CBS_pair_29 The CBS do 99.0 2.6E-09 5.7E-14 83.8 8.8 86 1-87 27-125 (126)
40 cd04609 CBS_pair_PALP_assoc2 T 99.0 3.6E-09 7.7E-14 79.9 9.2 83 1-87 27-109 (110)
41 cd04606 CBS_pair_Mg_transporte 99.0 3.2E-09 7E-14 80.9 9.0 82 1-89 28-109 (109)
42 cd04596 CBS_pair_DRTGG_assoc T 99.0 2.2E-09 4.8E-14 81.7 8.0 80 1-87 28-107 (108)
43 cd04603 CBS_pair_KefB_assoc Th 99.0 2.9E-09 6.2E-14 81.9 8.6 84 1-87 27-110 (111)
44 cd04621 CBS_pair_8 The CBS dom 99.0 3.8E-09 8.2E-14 84.9 9.4 85 1-87 27-134 (135)
45 cd04587 CBS_pair_CAP-ED_DUF294 99.0 4.4E-09 9.5E-14 80.1 9.2 85 1-87 27-112 (113)
46 cd04629 CBS_pair_16 The CBS do 99.0 2.4E-09 5.3E-14 81.7 7.7 85 1-87 27-113 (114)
47 PF00571 CBS: CBS domain CBS d 99.0 2.6E-09 5.7E-14 73.2 7.0 57 35-91 1-57 (57)
48 cd02205 CBS_pair The CBS domai 99.0 7.5E-09 1.6E-13 77.1 9.9 86 1-87 27-112 (113)
49 cd04643 CBS_pair_30 The CBS do 98.9 4.5E-09 9.7E-14 80.4 8.5 84 1-87 27-115 (116)
50 cd04583 CBS_pair_ABC_OpuCA_ass 98.9 7E-09 1.5E-13 78.3 9.4 81 1-87 28-108 (109)
51 cd04622 CBS_pair_9 The CBS dom 98.9 7E-09 1.5E-13 79.0 9.5 85 1-87 27-112 (113)
52 cd04610 CBS_pair_ParBc_assoc T 98.9 5.8E-09 1.3E-13 78.7 8.7 79 1-87 28-106 (107)
53 cd04635 CBS_pair_22 The CBS do 98.9 5.6E-09 1.2E-13 80.8 8.8 86 1-87 27-121 (122)
54 cd04608 CBS_pair_PALP_assoc Th 98.9 2.2E-09 4.8E-14 84.9 6.5 87 1-88 28-123 (124)
55 cd04586 CBS_pair_BON_assoc Thi 98.9 5.3E-09 1.1E-13 83.1 8.2 85 1-87 28-134 (135)
56 cd04632 CBS_pair_19 The CBS do 98.9 9E-09 1.9E-13 80.7 9.0 86 1-87 27-127 (128)
57 cd04599 CBS_pair_GGDEF_assoc2 98.9 5.2E-09 1.1E-13 78.7 7.3 78 1-87 27-104 (105)
58 cd04594 CBS_pair_EriC_assoc_ar 98.9 7E-09 1.5E-13 78.7 7.9 77 1-87 27-103 (104)
59 cd04640 CBS_pair_27 The CBS do 98.9 7.4E-09 1.6E-13 81.4 8.2 86 1-87 27-125 (126)
60 cd04601 CBS_pair_IMPDH This cd 98.9 7.1E-09 1.5E-13 78.4 7.4 81 1-87 28-109 (110)
61 cd04582 CBS_pair_ABC_OpuCA_ass 98.9 1.4E-08 3E-13 76.6 9.0 79 1-87 27-105 (106)
62 cd04637 CBS_pair_24 The CBS do 98.9 1.3E-08 2.8E-13 78.8 8.5 85 1-87 27-121 (122)
63 cd04802 CBS_pair_3 The CBS dom 98.9 2E-08 4.4E-13 76.5 9.3 84 1-87 27-111 (112)
64 cd04633 CBS_pair_20 The CBS do 98.8 1.3E-08 2.9E-13 78.5 8.0 84 1-87 27-120 (121)
65 cd04618 CBS_pair_5 The CBS dom 98.8 1.3E-08 2.8E-13 77.6 7.8 70 1-87 27-97 (98)
66 cd04591 CBS_pair_EriC_assoc_eu 98.8 1.9E-08 4E-13 77.2 8.4 75 1-87 28-104 (105)
67 cd04584 CBS_pair_ACT_assoc Thi 98.8 2.3E-08 5.1E-13 77.0 8.8 85 1-87 27-120 (121)
68 cd04638 CBS_pair_25 The CBS do 98.8 2.2E-08 4.7E-13 75.8 8.2 79 1-87 27-105 (106)
69 cd04602 CBS_pair_IMPDH_2 This 98.8 2.9E-08 6.2E-13 76.4 8.9 82 1-87 28-113 (114)
70 TIGR00400 mgtE Mg2+ transporte 98.8 2.7E-08 5.8E-13 96.1 9.7 84 2-92 171-254 (449)
71 cd04634 CBS_pair_21 The CBS do 98.8 4.2E-08 9E-13 79.2 9.2 84 1-87 27-142 (143)
72 cd04625 CBS_pair_12 The CBS do 98.7 6.3E-08 1.4E-12 73.7 8.9 78 9-87 33-111 (112)
73 cd04598 CBS_pair_GGDEF_assoc T 98.7 6.2E-08 1.3E-12 74.5 8.5 85 1-87 28-118 (119)
74 PRK11543 gutQ D-arabinose 5-ph 98.7 7.8E-08 1.7E-12 88.2 10.0 86 1-88 233-318 (321)
75 PRK05567 inosine 5'-monophosph 98.7 5.2E-08 1.1E-12 95.0 9.1 83 1-89 121-204 (486)
76 cd04614 CBS_pair_1 The CBS dom 98.6 1.1E-07 2.3E-12 71.9 7.3 69 1-87 27-95 (96)
77 PRK10892 D-arabinose 5-phospha 98.6 1.9E-07 4.1E-12 86.0 10.2 85 2-88 239-323 (326)
78 COG3448 CBS-domain-containing 98.6 1.2E-07 2.6E-12 86.6 8.1 91 1-92 279-374 (382)
79 PRK01862 putative voltage-gate 98.6 2.7E-07 5.9E-12 91.5 10.0 89 1-90 481-571 (574)
80 COG4109 Predicted transcriptio 98.5 2.2E-07 4.7E-12 86.6 7.8 82 1-89 224-305 (432)
81 TIGR01137 cysta_beta cystathio 98.5 3.6E-07 7.8E-12 87.7 9.6 85 1-89 369-453 (454)
82 COG0517 FOG: CBS domain [Gener 98.5 1.3E-06 2.7E-11 66.7 9.0 83 1-86 33-117 (117)
83 PRK07107 inosine 5-monophospha 98.5 6.7E-07 1.4E-11 87.7 9.1 84 1-88 131-218 (502)
84 PLN02274 inosine-5'-monophosph 98.4 9E-07 1.9E-11 86.9 9.9 108 1-126 134-245 (505)
85 PRK07807 inosine 5-monophospha 98.4 7.3E-07 1.6E-11 87.0 8.8 82 1-89 123-204 (479)
86 PTZ00314 inosine-5'-monophosph 98.4 1.1E-06 2.3E-11 86.2 9.0 84 1-89 130-217 (495)
87 TIGR00393 kpsF KpsF/GutQ famil 98.4 2.7E-06 5.9E-11 75.8 9.8 79 1-81 190-268 (268)
88 TIGR01303 IMP_DH_rel_1 IMP deh 98.3 2.3E-06 4.9E-11 83.5 8.8 80 2-89 123-202 (475)
89 COG3620 Predicted transcriptio 98.3 4.1E-06 8.8E-11 70.5 8.4 86 1-91 99-185 (187)
90 COG2905 Predicted signal-trans 98.2 6.3E-06 1.4E-10 80.8 8.2 84 3-89 185-269 (610)
91 KOG2118 Predicted membrane pro 98.1 2.4E-06 5.2E-11 83.8 4.9 98 1-100 241-338 (498)
92 COG3263 NhaP-type Na+/H+ and K 98.1 4E-06 8.8E-11 80.3 5.5 136 44-216 433-568 (574)
93 COG2239 MgtE Mg/Co/Ni transpor 97.9 2.7E-05 5.9E-10 75.5 7.3 81 2-89 172-252 (451)
94 smart00116 CBS Domain in cysta 97.9 3.7E-05 8E-10 48.5 5.4 47 43-89 2-48 (49)
95 cd04592 CBS_pair_EriC_assoc_eu 97.9 6.5E-05 1.4E-09 60.6 7.6 73 1-74 27-119 (133)
96 cd04597 CBS_pair_DRTGG_assoc2 97.8 3.9E-05 8.5E-10 59.7 5.8 55 33-87 58-112 (113)
97 TIGR01186 proV glycine betaine 97.8 0.00016 3.6E-09 68.3 10.1 82 3-91 278-359 (363)
98 PRK10070 glycine betaine trans 97.7 0.00018 4E-09 68.8 10.0 83 2-91 312-394 (400)
99 cd04608 CBS_pair_PALP_assoc Th 97.7 0.00032 7E-09 55.2 9.4 84 41-133 2-85 (124)
100 cd04589 CBS_pair_CAP-ED_DUF294 97.7 0.00038 8.2E-09 52.6 9.4 48 42-90 2-49 (111)
101 PRK10892 D-arabinose 5-phospha 97.7 0.00027 5.8E-09 65.1 9.9 57 33-89 202-260 (326)
102 KOG1764 5'-AMP-activated prote 97.7 0.0002 4.2E-09 68.3 8.7 93 1-95 263-364 (381)
103 COG2524 Predicted transcriptio 97.6 0.00019 4.1E-09 64.7 7.9 91 31-134 170-261 (294)
104 PRK14869 putative manganese-de 97.6 0.0002 4.3E-09 70.7 7.6 78 10-89 225-303 (546)
105 cd04614 CBS_pair_1 The CBS dom 97.5 0.00021 4.6E-09 53.7 5.9 49 41-89 1-49 (96)
106 cd04617 CBS_pair_4 The CBS dom 97.5 0.0007 1.5E-08 52.1 8.9 49 42-90 2-50 (118)
107 cd04801 CBS_pair_M50_like This 97.5 0.00058 1.3E-08 52.0 8.0 49 42-90 2-51 (114)
108 cd04592 CBS_pair_EriC_assoc_eu 97.5 0.0003 6.5E-09 56.7 6.5 50 42-91 2-51 (133)
109 PRK05326 potassium/proton anti 97.5 0.00058 1.3E-08 67.8 9.9 99 73-214 463-561 (562)
110 cd04613 CBS_pair_SpoIVFB_EriC_ 97.5 0.00087 1.9E-08 50.4 8.6 49 41-89 1-49 (114)
111 cd04618 CBS_pair_5 The CBS dom 97.5 0.00024 5.2E-09 53.8 5.2 47 43-89 3-50 (98)
112 cd04593 CBS_pair_EriC_assoc_ba 97.4 0.0013 2.8E-08 50.1 9.3 49 42-90 2-50 (115)
113 cd04615 CBS_pair_2 The CBS dom 97.4 0.0012 2.7E-08 49.8 9.1 48 42-89 2-49 (113)
114 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.0004 8.7E-09 51.9 6.2 47 42-88 2-48 (106)
115 cd04619 CBS_pair_6 The CBS dom 97.4 0.00045 9.8E-09 52.9 6.5 48 43-90 3-50 (114)
116 cd04627 CBS_pair_14 The CBS do 97.4 0.00044 9.5E-09 53.6 6.2 49 42-90 2-51 (123)
117 cd04641 CBS_pair_28 The CBS do 97.4 0.00049 1.1E-08 53.1 6.4 49 42-90 2-50 (120)
118 PRK11543 gutQ D-arabinose 5-ph 97.4 0.0011 2.3E-08 60.9 9.4 58 33-90 197-256 (321)
119 cd04630 CBS_pair_17 The CBS do 97.4 0.00065 1.4E-08 51.8 6.7 50 42-91 2-52 (114)
120 cd04643 CBS_pair_30 The CBS do 97.4 0.00057 1.2E-08 51.8 6.4 49 42-90 2-50 (116)
121 cd02205 CBS_pair The CBS domai 97.4 0.0021 4.5E-08 47.3 9.2 52 42-93 2-53 (113)
122 cd04623 CBS_pair_10 The CBS do 97.3 0.00075 1.6E-08 50.7 6.6 49 42-90 2-50 (113)
123 cd04632 CBS_pair_19 The CBS do 97.3 0.00065 1.4E-08 52.9 6.5 48 42-89 2-49 (128)
124 TIGR00393 kpsF KpsF/GutQ famil 97.3 0.0016 3.4E-08 58.0 9.4 58 33-90 155-213 (268)
125 cd04605 CBS_pair_MET2_assoc Th 97.3 0.00083 1.8E-08 50.5 6.6 49 41-89 2-50 (110)
126 PRK14869 putative manganese-de 97.3 0.00053 1.2E-08 67.7 6.8 60 33-92 68-127 (546)
127 cd04640 CBS_pair_27 The CBS do 97.3 0.00065 1.4E-08 53.0 5.8 47 42-88 2-48 (126)
128 cd04624 CBS_pair_11 The CBS do 97.3 0.001 2.2E-08 50.2 6.7 50 42-91 2-51 (112)
129 TIGR01137 cysta_beta cystathio 97.3 0.0017 3.7E-08 62.4 9.7 58 33-90 335-392 (454)
130 cd04609 CBS_pair_PALP_assoc2 T 97.2 0.0022 4.8E-08 47.8 8.4 48 42-90 2-49 (110)
131 cd04607 CBS_pair_NTP_transfera 97.2 0.003 6.6E-08 47.8 9.2 48 43-90 4-51 (113)
132 cd04629 CBS_pair_16 The CBS do 97.2 0.00077 1.7E-08 51.0 5.8 51 41-91 1-51 (114)
133 cd04600 CBS_pair_HPP_assoc Thi 97.2 0.0011 2.4E-08 51.0 6.3 49 41-89 2-50 (124)
134 cd04603 CBS_pair_KefB_assoc Th 97.2 0.001 2.2E-08 50.8 5.9 45 43-87 3-47 (111)
135 COG3448 CBS-domain-containing 97.2 0.00043 9.4E-09 63.7 4.4 55 34-88 246-300 (382)
136 cd04636 CBS_pair_23 The CBS do 97.1 0.0032 6.9E-08 49.4 8.5 50 42-91 2-51 (132)
137 cd04586 CBS_pair_BON_assoc Thi 97.1 0.0012 2.7E-08 51.9 5.9 52 41-92 2-53 (135)
138 PRK07807 inosine 5-monophospha 97.1 0.00061 1.3E-08 66.7 4.9 53 34-86 90-142 (479)
139 cd04598 CBS_pair_GGDEF_assoc T 97.1 0.0013 2.8E-08 50.2 5.8 48 41-89 1-49 (119)
140 PRK01862 putative voltage-gate 97.1 0.0023 4.9E-08 63.7 9.0 58 33-90 447-504 (574)
141 cd04803 CBS_pair_15 The CBS do 97.1 0.0013 2.9E-08 50.3 5.8 50 42-91 2-51 (122)
142 cd04642 CBS_pair_29 The CBS do 97.1 0.0011 2.3E-08 51.7 5.4 48 42-89 2-49 (126)
143 cd04588 CBS_pair_CAP-ED_DUF294 97.1 0.0016 3.4E-08 49.0 6.1 48 41-89 1-48 (110)
144 cd04599 CBS_pair_GGDEF_assoc2 97.0 0.0015 3.3E-08 48.5 5.6 46 41-87 1-46 (105)
145 cd04622 CBS_pair_9 The CBS dom 97.0 0.0054 1.2E-07 46.1 8.7 46 41-87 1-46 (113)
146 cd04590 CBS_pair_CorC_HlyC_ass 97.0 0.002 4.4E-08 48.4 6.2 49 42-90 2-51 (111)
147 cd04621 CBS_pair_8 The CBS dom 97.0 0.0017 3.7E-08 51.8 6.0 49 42-90 2-50 (135)
148 cd04595 CBS_pair_DHH_polyA_Pol 97.0 0.002 4.4E-08 48.5 6.1 48 41-89 2-49 (110)
149 cd04583 CBS_pair_ABC_OpuCA_ass 97.0 0.0025 5.4E-08 47.6 6.4 49 41-89 2-50 (109)
150 cd04585 CBS_pair_ACT_assoc2 Th 97.0 0.002 4.4E-08 48.8 5.9 48 42-90 2-49 (122)
151 cd04604 CBS_pair_KpsF_GutQ_ass 97.0 0.0078 1.7E-07 45.2 9.0 49 43-91 4-52 (114)
152 cd04631 CBS_pair_18 The CBS do 96.9 0.0021 4.5E-08 49.4 5.7 49 42-90 2-51 (125)
153 cd04635 CBS_pair_22 The CBS do 96.9 0.0022 4.8E-08 49.1 5.8 47 42-88 2-48 (122)
154 cd04612 CBS_pair_SpoIVFB_EriC_ 96.9 0.0024 5.2E-08 47.9 5.8 48 41-89 1-48 (111)
155 cd04626 CBS_pair_13 The CBS do 96.9 0.003 6.4E-08 47.7 6.3 48 42-89 2-49 (111)
156 cd04587 CBS_pair_CAP-ED_DUF294 96.9 0.0031 6.7E-08 47.5 6.3 48 42-90 2-49 (113)
157 cd04596 CBS_pair_DRTGG_assoc T 96.9 0.0025 5.5E-08 48.0 5.7 47 41-87 2-48 (108)
158 cd04800 CBS_pair_CAP-ED_DUF294 96.9 0.0036 7.8E-08 47.1 6.3 49 41-90 1-49 (111)
159 cd04620 CBS_pair_7 The CBS dom 96.8 0.0034 7.4E-08 47.6 6.2 48 42-90 2-50 (115)
160 cd04594 CBS_pair_EriC_assoc_ar 96.8 0.0045 9.7E-08 46.5 6.7 44 44-88 4-47 (104)
161 cd04611 CBS_pair_PAS_GGDEF_DUF 96.8 0.0036 7.7E-08 46.9 6.1 48 42-90 2-49 (111)
162 cd04639 CBS_pair_26 The CBS do 96.8 0.0038 8.1E-08 47.0 6.2 49 42-90 2-50 (111)
163 cd04637 CBS_pair_24 The CBS do 96.8 0.0038 8.2E-08 47.9 6.2 49 42-91 2-50 (122)
164 cd04634 CBS_pair_21 The CBS do 96.8 0.003 6.5E-08 50.7 5.7 49 42-91 2-50 (143)
165 cd04802 CBS_pair_3 The CBS dom 96.8 0.0044 9.5E-08 46.7 6.3 49 41-90 1-49 (112)
166 cd04584 CBS_pair_ACT_assoc Thi 96.7 0.0038 8.3E-08 47.6 5.8 48 42-89 2-49 (121)
167 cd04633 CBS_pair_20 The CBS do 96.7 0.0041 8.8E-08 47.5 6.0 48 42-90 2-49 (121)
168 cd04602 CBS_pair_IMPDH_2 This 96.7 0.0041 8.8E-08 47.4 5.5 46 42-87 3-51 (114)
169 cd04601 CBS_pair_IMPDH This cd 96.7 0.0038 8.3E-08 46.6 5.1 47 41-87 2-48 (110)
170 PRK05567 inosine 5'-monophosph 96.7 0.0041 9E-08 60.9 6.7 54 34-87 88-141 (486)
171 COG4109 Predicted transcriptio 96.6 0.0023 5E-08 60.2 4.4 118 33-165 188-319 (432)
172 COG3620 Predicted transcriptio 96.5 0.0088 1.9E-07 50.7 7.0 75 17-93 50-124 (187)
173 cd04610 CBS_pair_ParBc_assoc T 96.4 0.0075 1.6E-07 44.9 5.5 46 41-87 2-47 (107)
174 COG2905 Predicted signal-trans 96.4 0.0045 9.8E-08 61.2 5.1 64 33-96 149-212 (610)
175 cd04625 CBS_pair_12 The CBS do 96.4 0.01 2.2E-07 44.7 6.0 47 43-90 3-49 (112)
176 cd04606 CBS_pair_Mg_transporte 96.3 0.0084 1.8E-07 45.2 5.1 42 46-87 2-48 (109)
177 TIGR01302 IMP_dehydrog inosine 96.3 0.0098 2.1E-07 57.8 6.6 54 35-88 82-138 (450)
178 PTZ00314 inosine-5'-monophosph 96.2 0.0066 1.4E-07 59.7 4.9 52 35-86 98-152 (495)
179 TIGR01303 IMP_DH_rel_1 IMP deh 96.1 0.0086 1.9E-07 58.7 5.4 51 35-86 90-140 (475)
180 KOG2550 IMP dehydrogenase/GMP 96.0 0.019 4.2E-07 55.0 6.7 83 1-88 142-226 (503)
181 TIGR00400 mgtE Mg2+ transporte 95.9 0.022 4.7E-07 55.2 7.2 56 32-87 130-190 (449)
182 TIGR03415 ABC_choXWV_ATP choli 95.9 0.022 4.8E-07 54.3 6.8 73 13-91 309-381 (382)
183 PRK15094 magnesium/cobalt effl 95.9 0.022 4.7E-07 52.4 6.5 118 32-162 66-197 (292)
184 PRK07107 inosine 5-monophospha 95.8 0.031 6.7E-07 55.2 7.8 45 42-86 106-153 (502)
185 KOG1764 5'-AMP-activated prote 95.7 0.097 2.1E-06 50.0 10.3 92 1-92 188-288 (381)
186 cd04638 CBS_pair_25 The CBS do 95.6 0.037 8.1E-07 41.2 5.9 46 42-87 2-47 (106)
187 COG0517 FOG: CBS domain [Gener 95.4 0.049 1.1E-06 41.0 5.9 52 41-93 7-58 (117)
188 cd04591 CBS_pair_EriC_assoc_eu 95.3 0.038 8.3E-07 41.8 5.1 47 43-89 4-53 (105)
189 PLN02274 inosine-5'-monophosph 95.2 0.033 7.1E-07 55.0 5.7 49 39-87 106-157 (505)
190 KOG0474 Cl- channel CLC-7 and 94.6 0.053 1.2E-06 54.5 5.1 55 34-88 691-745 (762)
191 COG4175 ProV ABC-type proline/ 94.5 0.098 2.1E-06 49.2 6.4 51 40-91 334-384 (386)
192 TIGR03520 GldE gliding motilit 93.8 0.14 3.1E-06 49.1 6.3 115 32-160 190-317 (408)
193 KOG0475 Cl- channel CLC-3 and 93.8 0.26 5.7E-06 49.6 8.1 87 1-88 583-693 (696)
194 COG2239 MgtE Mg/Co/Ni transpor 91.8 0.36 7.7E-06 47.2 6.0 55 32-86 131-190 (451)
195 PF00571 CBS: CBS domain CBS d 91.8 0.21 4.6E-06 33.3 3.2 24 1-25 33-56 (57)
196 PRK10070 glycine betaine trans 84.9 2.3 4.9E-05 40.9 6.2 43 47-89 291-333 (400)
197 PRK11573 hypothetical protein; 80.9 5.9 0.00013 38.2 7.4 119 32-160 186-317 (413)
198 smart00116 CBS Domain in cysta 79.7 2.6 5.6E-05 25.5 3.1 23 1-24 26-48 (49)
199 COG1125 OpuBA ABC-type proline 78.4 3.4 7.4E-05 38.0 4.5 43 46-88 266-308 (309)
200 COG1253 TlyC Hemolysins and re 71.9 9.4 0.0002 36.8 6.1 120 32-163 205-337 (429)
201 TIGR01186 proV glycine betaine 66.3 17 0.00038 34.4 6.4 46 44-89 253-298 (363)
202 PTZ00154 40S ribosomal protein 53.7 7.1 0.00015 32.0 1.2 51 143-205 47-100 (134)
203 cd00565 ThiS ThiaminS ubiquiti 47.1 23 0.00051 24.6 3.0 31 41-71 6-36 (65)
204 PF14451 Ub-Mut7C: Mut7-C ubiq 46.5 4.7 0.0001 30.2 -0.8 50 115-166 24-73 (81)
205 KOG0187 40S ribosomal protein 45.9 8 0.00017 31.4 0.4 51 143-205 47-100 (134)
206 PRK08053 sulfur carrier protei 42.3 32 0.00069 24.2 3.0 31 41-71 7-37 (66)
207 PRK05659 sulfur carrier protei 41.8 34 0.00073 23.7 3.1 30 42-71 8-37 (66)
208 PF05198 IF3_N: Translation in 40.3 36 0.00078 25.1 3.1 25 64-88 12-36 (76)
209 PRK07440 hypothetical protein; 37.9 39 0.00084 24.2 3.0 31 41-71 11-41 (70)
210 PF14306 PUA_2: PUA-like domai 35.4 40 0.00086 28.4 3.1 98 9-126 51-157 (160)
211 PRK00568 carbon storage regula 34.7 67 0.0015 23.9 3.8 20 194-214 16-35 (76)
212 PHA00669 hypothetical protein 34.3 98 0.0021 24.7 4.8 24 144-167 37-62 (114)
213 cd04390 RhoGAP_ARHGAP22_24_25 29.9 41 0.00088 28.7 2.3 46 114-159 40-90 (199)
214 PRK01712 carbon storage regula 29.7 1E+02 0.0022 22.2 3.9 20 194-214 16-35 (64)
215 PF02599 CsrA: Global regulato 29.6 72 0.0016 22.0 3.0 20 194-214 16-35 (54)
216 KOG0476 Cl- channel CLC-2 and 28.8 68 0.0015 33.8 3.9 54 41-96 810-863 (931)
217 PRK05863 sulfur carrier protei 28.6 63 0.0014 22.6 2.7 31 42-72 8-38 (65)
218 PF13098 Thioredoxin_2: Thiore 27.9 47 0.001 24.8 2.1 36 53-88 72-111 (112)
219 PF02879 PGM_PMM_II: Phosphogl 27.1 1.3E+02 0.0028 22.5 4.5 33 50-82 70-102 (104)
220 COG1551 CsrA RNA-binding globa 27.1 1E+02 0.0023 22.7 3.6 19 194-213 16-34 (73)
221 TIGR01683 thiS thiamine biosyn 26.3 73 0.0016 22.0 2.7 30 42-71 6-35 (64)
222 cd04403 RhoGAP_ARHGAP27_15_12_ 25.6 75 0.0016 26.9 3.2 46 114-159 34-86 (187)
223 cd04389 RhoGAP_KIAA1688 RhoGAP 25.6 56 0.0012 27.8 2.4 46 114-159 40-89 (187)
224 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 25.5 53 0.0012 28.5 2.3 46 114-159 27-77 (206)
225 PRK06083 sulfur carrier protei 25.2 84 0.0018 23.5 3.0 32 40-71 24-55 (84)
226 cd04388 RhoGAP_p85 RhoGAP_p85: 24.8 58 0.0013 28.4 2.4 45 114-159 33-82 (200)
227 COG2216 KdpB High-affinity K+ 24.8 45 0.00097 33.7 1.8 20 1-22 430-449 (681)
228 COG2104 ThiS Sulfur transfer p 24.3 92 0.002 22.4 2.9 35 41-77 9-43 (68)
229 cd04380 RhoGAP_OCRL1 RhoGAP_OC 23.3 72 0.0016 27.8 2.7 47 114-160 68-121 (220)
230 PRK06437 hypothetical protein; 23.2 92 0.002 22.0 2.8 32 44-77 15-46 (67)
231 PF00833 Ribosomal_S17e: Ribos 22.4 9.9 0.00022 30.7 -2.7 50 143-204 47-99 (121)
232 PF15631 Imm-NTF2-2: NTF2 fold 22.4 1.1E+02 0.0024 22.1 3.0 36 84-124 4-39 (66)
233 cd04406 RhoGAP_myosin_IXA RhoG 22.3 75 0.0016 27.0 2.5 46 114-159 33-83 (186)
234 TIGR00202 csrA carbon storage 21.6 1.7E+02 0.0037 21.3 3.9 20 194-214 16-35 (69)
235 cd04385 RhoGAP_ARAP RhoGAP_ARA 21.6 68 0.0015 27.1 2.1 46 114-159 33-85 (184)
236 cd04379 RhoGAP_SYD1 RhoGAP_SYD 21.3 76 0.0016 27.6 2.4 46 114-159 36-89 (207)
237 cd04382 RhoGAP_MgcRacGAP RhoGA 21.1 70 0.0015 27.4 2.1 46 114-160 35-86 (193)
238 cd04383 RhoGAP_srGAP RhoGAP_sr 21.0 71 0.0015 27.2 2.1 46 114-159 36-88 (188)
239 cd04407 RhoGAP_myosin_IXB RhoG 20.8 81 0.0017 26.8 2.4 46 114-159 33-83 (186)
240 cd04394 RhoGAP-ARHGAP11A RhoGA 20.6 98 0.0021 26.6 2.9 46 114-159 37-85 (202)
241 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 20.4 88 0.0019 26.9 2.6 47 114-160 34-87 (196)
242 TIGR03279 cyano_FeS_chp putati 20.0 2E+02 0.0043 28.3 5.1 84 46-137 324-418 (433)
No 1
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-43 Score=335.22 Aligned_cols=183 Identities=22% Similarity=0.452 Sum_probs=162.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
||||+++.|+|+|+||.||++..+..+......++.+++ ||++|||+++++.++|++||+++.|||+|+||||+++|||
T Consensus 223 ~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiV 301 (413)
T PRK11573 223 IVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLV 301 (413)
T ss_pred EEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEe
Confidence 699999999999999999999765433211123455666 8999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526 81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~ 160 (252)
|++||+|+|+|+|.||+|..+. ..+.+.++|+|+++|.++++|+++.||++||++ +|+|+|||++++||++|++
T Consensus 302 TleDilEeivGei~de~d~~~~-----~~i~~~~~~~~~v~G~~~l~d~~~~l~~~l~~~-~~~Tl~G~i~~~lg~iP~~ 375 (413)
T PRK11573 302 TVEDILEEIVGDFTTSMSPTLA-----EEVTPQNDGSVIIDGTANVREINKAFNWHLPED-DARTVNGVILEALEEIPVA 375 (413)
T ss_pred eHHHHHHHHhCCCCcccCcccc-----cceEEecCCEEEEEeeeEHHHHHHHhCCCCCCC-CCeeHHHHHHHHhCcCCCC
Confidence 9999999999999999874221 236778899999999999999999999999875 7999999999999999999
Q ss_pred CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEcC
Q 041526 161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERIN 217 (252)
Q Consensus 161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~ 217 (252)
||++.+ ++|+|+|++|+++||.+|++++..
T Consensus 376 Ge~~~~---------------------------~~~~f~V~~~~~~rI~~v~v~~~~ 405 (413)
T PRK11573 376 GTRVRI---------------------------GEYDIDILDVQDNMIKQVKVTPVK 405 (413)
T ss_pred CCEEEE---------------------------CCEEEEEEEecCCeEEEEEEEECC
Confidence 999999 599999999999999999998654
No 2
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-42 Score=298.17 Aligned_cols=183 Identities=33% Similarity=0.616 Sum_probs=168.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
|||+.++.|+|.||+++||||..+.... ..+.+.+++ ||+.+|||+.++..+|+.||.++.|||+|+||||++.|+|
T Consensus 103 fPVi~edkD~v~GIL~AKDLL~~~~~~~--~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLV 179 (293)
T COG4535 103 FPVISEDKDHVEGILLAKDLLPFMRSDA--EPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLV 179 (293)
T ss_pred CCcccCCchhhhhhhhHHHHHHHhcCCc--ccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeE
Confidence 7999999999999999999999876543 246788988 9999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526 81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~ 160 (252)
|.|||||.|||+|.||||.++. ..|.+.+.+.|.|.|.|+++++|+.||..++++ +++|+||++++.||++|+.
T Consensus 180 TIEDiLEqIVGdIEDE~Deee~-----~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDe-evDTIGGLVm~afGhLP~R 253 (293)
T COG4535 180 TIEDILEQIVGDIEDEYDEEED-----ADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDE-EVDTIGGLVMQAFGHLPAR 253 (293)
T ss_pred EHHHHHHHHhcccccccchhhh-----hhhHhhcCCceEEEecccHHHHHHHhcCCCChh-hhhhhhHHHHHHhccCCCC
Confidence 9999999999999999986643 237788999999999999999999999999874 7999999999999999999
Q ss_pred CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEcCCc
Q 041526 161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINND 219 (252)
Q Consensus 161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~~~ 219 (252)
|+.|.+ ++|.|+|...|.||+..++++.+...
T Consensus 254 GE~i~i---------------------------~~~~FkV~~ADsRrv~~l~vt~~~~~ 285 (293)
T COG4535 254 GEKIDI---------------------------GGYQFKVARADSRRVIQLHVTVPDDS 285 (293)
T ss_pred CCEEEE---------------------------cceEEEEeecccceEEEEEEecCCCc
Confidence 999999 69999999999999999999976543
No 3
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=100.00 E-value=2.1e-40 Score=302.29 Aligned_cols=180 Identities=33% Similarity=0.583 Sum_probs=161.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
||||+++.|+++|+||.|||+..+..+. ...++.++| +++++||+++++.++|+.|++++.|+|+|+||||+++|+|
T Consensus 103 ~PV~~~~~d~iiGiv~~kDll~~~~~~~--~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiV 179 (292)
T PRK15094 103 FPVISEDKDHIEGILMAKDLLPFMRSDA--EAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLV 179 (292)
T ss_pred EEEecCCCCcEEEEEEHHHHHhHhhccC--CcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEe
Confidence 6999887789999999999986554322 123578888 7788999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526 81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~ 160 (252)
|++||+++|+|+|.||+|.... ..+.+.++|+|+++|.++|++|++.||++||++ +|+|||||++++||++|++
T Consensus 180 TleDIle~ivGei~de~d~~~~-----~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~-~~~Tl~G~i~~~l~~iP~~ 253 (292)
T PRK15094 180 TIEDILELIVGEIEDEYDEEDD-----IDFRQLSRHTWTVRALASIEDFNEAFGTHFSDE-EVDTIGGLVMQAFGHLPAR 253 (292)
T ss_pred EHHHHHHHHhCCCccccccccc-----cccEEeCCCeEEEEeccCHHHHHHHhCCCCCCC-CCccHHHHHHHHhCcCCCC
Confidence 9999999999999999974321 247788999999999999999999999999875 7999999999999999999
Q ss_pred CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEc
Q 041526 161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERI 216 (252)
Q Consensus 161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~ 216 (252)
|++|.+ ++|+|+|++|+++||.+|+|++.
T Consensus 254 Gd~i~~---------------------------~~~~f~V~~~~~~rI~~v~v~~~ 282 (292)
T PRK15094 254 GETIDI---------------------------DGYQFKVAMADSRRIIQVHVKIP 282 (292)
T ss_pred CCEEEE---------------------------CCEEEEEEEccCCeEEEEEEEEC
Confidence 999999 59999999999999999999864
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=316.80 Aligned_cols=184 Identities=39% Similarity=0.702 Sum_probs=160.9
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+|||+++.|+++|++|+|||+.+...++. .......+ +|+++||+++++.++|++||+++.|||+|+||||++.|+|
T Consensus 242 ~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlV 318 (429)
T COG1253 242 IPVYDGDLDNIIGIVHVKDLLRALLDGQS--DLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLV 318 (429)
T ss_pred eeEEcCCCCcEEEEEEHHHHHHHHhcCcc--ccchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEe
Confidence 69999889999999999999988766531 12222334 5999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526 81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~ 160 (252)
|++||+|+|+|+|.||+|..++ +.+.++.+++|+++|.++++|+++.+|++++++.+|+|+|||+++++|++|++
T Consensus 319 TleDIiEeIvGei~de~d~~~~-----~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~~ 393 (429)
T COG1253 319 TLEDIIEEIVGEIPDEHDEDEE-----EDIIQRDDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPKV 393 (429)
T ss_pred EHHHHHHHHhCCCcCccccccc-----ccceEecCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCCC
Confidence 9999999999999999985322 23556655559999999999999999999866557999999999999999999
Q ss_pred CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEcCCc
Q 041526 161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINND 219 (252)
Q Consensus 161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~~~ 219 (252)
|+.+.+ ++|+|+|++|+++||.+|+|++....
T Consensus 394 g~~~~~---------------------------~~~~~~V~~~~~~rI~~v~i~~~~~~ 425 (429)
T COG1253 394 GESVVI---------------------------GGLRFEVLDMDGRRIDKVLIVRLKDK 425 (429)
T ss_pred CCEEEE---------------------------cCCeEEEEEccCCcEEEEEEEEcCCC
Confidence 999999 58999999999999999999976543
No 5
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=4.3e-40 Score=312.52 Aligned_cols=177 Identities=35% Similarity=0.611 Sum_probs=159.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+|||+++.|+|+||||.||++..+..+ ..++.+++ +++++||+++++.++|++|++++.|+|+|+||||+++|||
T Consensus 227 ~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~l~~~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiV 301 (408)
T TIGR03520 227 IPVYKETIDNITGVLYIKDLLPHLNKK----NFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLV 301 (408)
T ss_pred EEEEcCCCCceEEEEEHHHHHhHhccC----CCCHHHHc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEE
Confidence 699999889999999999998755321 24578888 7899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCC---C-CCccCCHHHHHHHHhCC
Q 041526 81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMP---E-GHQYETVSGFVCEAFGY 156 (252)
Q Consensus 81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~---~-~~~~~TLaGlil~~lg~ 156 (252)
|++||+|+|+|+|.||+|.+. ..+.+.++|+|+++|.++|+|+++.+|++++ . .++|+|+|||+++++|+
T Consensus 302 T~eDileeivgei~de~d~~~------~~i~~~~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~ 375 (408)
T TIGR03520 302 TLEDIIEEIVGDISDEFDDED------LIYSKIDDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGG 375 (408)
T ss_pred EHHHHHHHHhCCCCCcCCcCc------cceEEeCCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCc
Confidence 999999999999999987432 3467789999999999999999999999853 2 24699999999999999
Q ss_pred CCCCCcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEE
Q 041526 157 IPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFER 215 (252)
Q Consensus 157 iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~ 215 (252)
+|++||++.+ ++|+|+|++|+++||.+|++++
T Consensus 376 iP~~G~~~~~---------------------------~~~~f~V~~~~~~rI~~v~v~~ 407 (408)
T TIGR03520 376 FPKKGEKITF---------------------------ENFEFTIEAMDKKRIKQVKVTI 407 (408)
T ss_pred CCCCCCEEEE---------------------------CCEEEEEEEccCCeEEEEEEEE
Confidence 9999999999 5999999999999999999975
No 6
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-40 Score=303.99 Aligned_cols=185 Identities=29% Similarity=0.592 Sum_probs=168.2
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+|||+++.|||+||+|+||+++++.+.+.+...++..++ .+|+|||+++++.+.|..|++++.|+|+||||||++.|+|
T Consensus 236 iplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLV 314 (423)
T COG4536 236 IPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLV 314 (423)
T ss_pred eeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeee
Confidence 699999999999999999999998766534455676666 7889999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCC
Q 041526 81 TLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 81 TleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~ 160 (252)
|+|||+|||+|++.|++|... +.+.+.++|+|.++|+++++|+|+.|++.||++ +..|++|++++++..||..
T Consensus 315 TLEDIlEEIVGdftde~d~~~------~ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~e-~a~TinGLvle~le~IP~~ 387 (423)
T COG4536 315 TLEDILEEIVGDFTDEHDTLA------KEVIPQSDGSFIIDGSANVRDLNRALDWNLPDE-DARTINGLVLEELEEIPEE 387 (423)
T ss_pred eHHHHHHHHhccccccCcccc------hhhcccCCCcEEEeCCCcHHHHHHhcCCCCCCC-cchhHHHHHHHHHHhCCCC
Confidence 999999999999999987543 246678999999999999999999999999975 6999999999999999999
Q ss_pred CcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEEEcCCch
Q 041526 161 GESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFERINNDE 220 (252)
Q Consensus 161 Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~~~~~~~ 220 (252)
|..+++ .+++|+|++++.+||++|++.+....+
T Consensus 388 ~~~~~i---------------------------~~~~~~Il~~~~N~I~~vri~~~~~~~ 420 (423)
T COG4536 388 GQAVRI---------------------------GGYRIDILKVQENRIKQVKITPLKALE 420 (423)
T ss_pred CeEEEE---------------------------cCEEEEEEehhhcceeeEEEEecCccC
Confidence 999999 699999999999999999999776543
No 7
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=99.78 E-value=1.2e-18 Score=130.38 Aligned_cols=79 Identities=33% Similarity=0.687 Sum_probs=68.9
Q ss_pred EecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCcccccc
Q 041526 112 MRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKE 191 (252)
Q Consensus 112 ~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (252)
++++|+|.++|+++|.+|++.||++||++ +++|||||++++||++|+.|+++.+..
T Consensus 2 ~~~~~~~~v~G~~~l~~l~~~~~~~l~~~-~~~Tl~G~i~~~l~~iP~~Ge~~~i~~----------------------- 57 (81)
T PF03471_consen 2 KLDDGTYIVSGSTPLDDLNELLGLDLPEE-DYDTLGGLILEQLGRIPEVGERVEIEL----------------------- 57 (81)
T ss_dssp EETTSEEEEETTSBHHHHHHHHTS-TTTT-TTSBHHHHHHHHHTSS--TTSEEEEEE-----------------------
T ss_pred eEcCCEEEEEecCCHHHHHHHHCcCCCcc-chhhHHHHHHHHcCCCCCCCeEEEEEc-----------------------
Confidence 56899999999999999999999999984 799999999999999999999777732
Q ss_pred ccceEEEEEEEecCCeeeEEEEEEc
Q 041526 192 KHQIYKLEILAGNARKVSAVRFERI 216 (252)
Q Consensus 192 ~~~~~~~~V~~~~~~ri~~V~i~~~ 216 (252)
++|.|+|.+|+++||.+|+|++.
T Consensus 58 --~~~~~~V~~~~~~rI~~V~i~~~ 80 (81)
T PF03471_consen 58 --ENYEFEVLEMDGRRIRKVRITRL 80 (81)
T ss_dssp --TTEEEEEEEEETTEEEEEEEEE-
T ss_pred --CCEEEEEEEeeCCEEEEEEEEEC
Confidence 48999999999999999999875
No 8
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.25 E-value=3.7e-11 Score=115.97 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=88.6
Q ss_pred CeEEecCC--CCEEEEEEHHHHhHHHHcCCcccccchhhhhc-CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEE
Q 041526 1 VPVFEQRI--DNIVGIAYAMDLLDYVQKGELLESTKVADMAH-KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTV 77 (252)
Q Consensus 1 lPV~~~~~--d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~-r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~v 77 (252)
+||++++. ++++|+|+.+||+... . ...++.++|. .++.++++++++.++++.|++++.++++|+|++|.++
T Consensus 114 lpVvd~~~~~~~lvGIVt~rDL~~~~-~----~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lv 188 (450)
T TIGR01302 114 IPVVEDGDMTGKLVGIITKRDIRFVK-D----KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELV 188 (450)
T ss_pred EEEEeCCCCCCeEEEEEEHHHHhhhh-c----CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEE
Confidence 59998754 6999999999997532 1 1346889996 3899999999999999999999999999999999999
Q ss_pred EEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChH
Q 041526 78 GVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSID 127 (252)
Q Consensus 78 GIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~ 127 (252)
|+||.+||++++ ++. .+.+..+|+|+|.|.+++.
T Consensus 189 GiVT~~DIl~~~------~~~----------~~~~d~~g~l~V~aav~~~ 222 (450)
T TIGR01302 189 GLITMKDIVKRR------KFP----------HASKDENGRLIVGAAVGTR 222 (450)
T ss_pred EEEEhHHhhhcc------cCC----------cceEeCCCCEEEEEEecCc
Confidence 999999999985 221 1344678999999999873
No 9
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.19 E-value=1.2e-10 Score=89.59 Aligned_cols=87 Identities=24% Similarity=0.295 Sum_probs=72.2
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC--CCEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY--GGTVG 78 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~--G~~vG 78 (252)
+||+++ .++++|+++.+||+..+..+.......+.++|.+++.++++++++.++++.|.+++.+.++|+|++ |.++|
T Consensus 27 ~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~G 105 (115)
T cd04593 27 ALVVDR-DGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLG 105 (115)
T ss_pred EEEEcC-CCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEE
Confidence 477765 378999999999987665432212234778888889999999999999999999999999999988 89999
Q ss_pred EEcchhHHHH
Q 041526 79 VVTLEDVVEE 88 (252)
Q Consensus 79 IVTleDIlee 88 (252)
+||..|++++
T Consensus 106 vit~~di~~~ 115 (115)
T cd04593 106 LLTRENVLLA 115 (115)
T ss_pred EEEhHHhhcC
Confidence 9999999863
No 10
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=3.4e-10 Score=87.96 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=72.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcc-----------cccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELL-----------ESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVV 69 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~-----------~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiV 69 (252)
+||++++.++++|+|+.+||+..+.++... ...++.+++.+++.++++++++.++++.|++.+.+.++|
T Consensus 27 i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V 106 (125)
T cd04631 27 LPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPV 106 (125)
T ss_pred ceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEE
Confidence 588876447899999999998766433210 123578888788999999999999999999999999999
Q ss_pred ecCCCCEEEEEcchhHHH
Q 041526 70 LNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 70 VDE~G~~vGIVTleDIle 87 (252)
+|++|.++|+||..||+.
T Consensus 107 ~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 107 VDDDGKLVGIVTERDLLK 124 (125)
T ss_pred EcCCCcEEEEEEHHHhhc
Confidence 998899999999999975
No 11
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=3.7e-10 Score=85.74 Aligned_cols=85 Identities=24% Similarity=0.296 Sum_probs=71.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCc-ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
+||++++ ++++|+++.+|++..+..... ....++.++|.+++.+++++.++.++++.|.+.+.+.++|+|+ |.++|+
T Consensus 27 ~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gv 104 (113)
T cd04623 27 VVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGI 104 (113)
T ss_pred EEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEE
Confidence 5888764 789999999999976654321 1124688888888899999999999999999999988899987 999999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|+++
T Consensus 105 it~~di~~ 112 (113)
T cd04623 105 VSIGDVVK 112 (113)
T ss_pred EEHHHhhc
Confidence 99999975
No 12
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.14 E-value=2.5e-10 Score=101.95 Aligned_cols=88 Identities=26% Similarity=0.456 Sum_probs=81.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
.||.++ |+++|+++..|+..++++++ ....++++|++.++++.+++.+.++++.|..++....+|+|..|..+|+|
T Consensus 206 aPVvd~--dk~vGiit~~dI~~aia~g~--~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiI 281 (294)
T COG2524 206 APVVDD--DKIVGIITLSDIAKAIANGN--LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGII 281 (294)
T ss_pred CceecC--CceEEEEEHHHHHHHHHcCC--ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEE
Confidence 388886 59999999999999998875 35779999999999999999999999999999999999999899999999
Q ss_pred cchhHHHHHHhh
Q 041526 81 TLEDVVEEIVGE 92 (252)
Q Consensus 81 TleDIleeIvGe 92 (252)
|..|||..|+|.
T Consensus 282 TrTDIL~~ia~~ 293 (294)
T COG2524 282 TRTDILTRIAGL 293 (294)
T ss_pred ehHHHHHHhhcc
Confidence 999999999863
No 13
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=3.5e-10 Score=87.00 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=70.9
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
+||++++.++++|+++.+|+++.+..+. .....++.++|.+++.++++++++.++++.|.+.+.+.++|+|+ |.++|+
T Consensus 27 ~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gv 105 (114)
T cd04630 27 LVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGI 105 (114)
T ss_pred EEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEE
Confidence 4788753368999999999987553321 11234688889888999999999999999999999999999998 999999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|++.
T Consensus 106 i~~~dl~~ 113 (114)
T cd04630 106 ISLTDIFL 113 (114)
T ss_pred EEHHHhhc
Confidence 99999874
No 14
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=3.5e-10 Score=86.28 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=72.9
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||++++ +.++|+|+.+|++..+..+.. ....+.++|.+++..+++++++.++++.|.+++...++|+|++|.+.|++
T Consensus 27 ~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gil 104 (112)
T cd04624 27 VVVVDPD-ERPIGIVTERDIVRAVAAGID-LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVI 104 (112)
T ss_pred EEEECCC-CCEEEEeeHHHHHHHHhccCC-CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEE
Confidence 4788764 789999999999877654432 23468888888999999999999999999998889999999999999999
Q ss_pred cchhHHHH
Q 041526 81 TLEDVVEE 88 (252)
Q Consensus 81 TleDIlee 88 (252)
|..|++++
T Consensus 105 t~~dl~~~ 112 (112)
T cd04624 105 SIRDLVRE 112 (112)
T ss_pred EHHHhccC
Confidence 99999763
No 15
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.11 E-value=4.9e-10 Score=85.20 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=72.2
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecC-CCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE-YGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE-~G~~vGI 79 (252)
+||++++ ++++|+++.+||+..+.........++.++|.+++.++++++++.++++.|+..+.+.++|+|+ +|.++|+
T Consensus 27 ~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gv 105 (114)
T cd04613 27 FPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGI 105 (114)
T ss_pred eeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEE
Confidence 5888764 7899999999998765443221224688899889999999999999999999999999999988 8999999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|++.
T Consensus 106 vt~~di~~ 113 (114)
T cd04613 106 LSRSDLLS 113 (114)
T ss_pred EEhHHhhc
Confidence 99999874
No 16
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.10 E-value=5.6e-10 Score=85.24 Aligned_cols=86 Identities=24% Similarity=0.392 Sum_probs=71.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .++++|+|+.+|++.....+......++.++|.+++.+++.++++.++++.|++++.+.++|+|+.|.++|+|
T Consensus 27 ~~vvd~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvv 105 (113)
T cd04615 27 LPVVDD-KKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIV 105 (113)
T ss_pred EeEEcC-CCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEE
Confidence 477765 3789999999999865433322223468888888899999999999999999999988899999999999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|+++
T Consensus 106 t~~dl~~ 112 (113)
T cd04615 106 TEDDILR 112 (113)
T ss_pred EHHHhhc
Confidence 9999874
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09 E-value=5.8e-10 Score=86.54 Aligned_cols=86 Identities=24% Similarity=0.312 Sum_probs=71.8
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCc----------ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL----------LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL 70 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~----------~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV 70 (252)
+||++++ ++++|+|+.+||+..+..... .....+.++|.+.+.++++++++.++++.|.+.+.+..+|+
T Consensus 28 ~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv 106 (124)
T cd04600 28 LPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVV 106 (124)
T ss_pred eeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEE
Confidence 5888764 789999999999876543210 11235788888889999999999999999999999999999
Q ss_pred cCCCCEEEEEcchhHHH
Q 041526 71 NEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 71 DE~G~~vGIVTleDIle 87 (252)
|+.|.++|+||..|++.
T Consensus 107 ~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 107 DEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cCCCCEEEEEEhHHhhc
Confidence 98999999999999875
No 18
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.08 E-value=9.9e-10 Score=83.30 Aligned_cols=84 Identities=21% Similarity=0.392 Sum_probs=71.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++++|+++.+||+.....+.. ...++.++|.+++.++++++++.++++.|++.+.+.++|+|+.|.+.|+|
T Consensus 27 ~~V~~~--~~~~G~v~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi 103 (111)
T cd04611 27 IVVVDD--GRPLGIVTERDILRLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLL 103 (111)
T ss_pred EEEeeC--CEEEEEEeHHHHHHHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEE
Confidence 478776 789999999999876543221 23568888888899999999999999999999999999999889999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|+++
T Consensus 104 ~~~di~~ 110 (111)
T cd04611 104 SQTDLLQ 110 (111)
T ss_pred EhHHhhc
Confidence 9999874
No 19
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=1.1e-09 Score=83.36 Aligned_cols=84 Identities=26% Similarity=0.340 Sum_probs=71.8
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||++++ ++++|+|+.+|++..+..+. ...++.++|.+++.++++++++.++++.|++++.+.++|+|+.|.++|++
T Consensus 27 ~~V~~~~-~~~~G~v~~~~l~~~~~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~i 103 (111)
T cd04639 27 FPVVDGD-GHLVGLLTRDDLIRALAEGG--PDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLV 103 (111)
T ss_pred ceEECCC-CcEEEEeeHHHHHHHHHhcC--CCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEE
Confidence 5888763 68999999999987655432 23468888888999999999999999999999999999999889999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|+.+
T Consensus 104 t~~dl~~ 110 (111)
T cd04639 104 TLENVGE 110 (111)
T ss_pred EHHHhhc
Confidence 9999875
No 20
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.07 E-value=1.1e-09 Score=84.05 Aligned_cols=84 Identities=23% Similarity=0.415 Sum_probs=68.5
Q ss_pred eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCC--CcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDS--MSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~--~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
||+++ ++++|+|+.+|++..+..+......++.++|.+++.+++++ .++.++++.|.+++.+.++|+|++|.++|+
T Consensus 29 ~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gv 106 (115)
T cd04620 29 LVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGL 106 (115)
T ss_pred EEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEE
Confidence 55553 78999999999987654332112346888887788888887 789999999999999999999999999999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|++.
T Consensus 107 it~~dl~~ 114 (115)
T cd04620 107 VTAESIRQ 114 (115)
T ss_pred EEhHHhhc
Confidence 99999874
No 21
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.07 E-value=1.3e-09 Score=82.86 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=70.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .++++|+++.++++..+..+. ..+.+++.+++.++++++++.++++.|++.+.+.++|+|+.|.+.|+|
T Consensus 28 ~~V~d~-~~~~~G~v~~~~l~~~~~~~~----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v 102 (110)
T cd04605 28 LPVVDE-DGRLVGIVTSWDISKAVARDK----KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGII 102 (110)
T ss_pred EEEECC-CCcEEEEEeHHHHHHHHhhCc----cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEE
Confidence 477765 379999999999987654332 247788888999999999999999999999999999999999999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 103 ~~~di~~ 109 (110)
T cd04605 103 TSEDISK 109 (110)
T ss_pred EHHHhhh
Confidence 9999864
No 22
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.06 E-value=1.3e-09 Score=83.56 Aligned_cols=85 Identities=22% Similarity=0.292 Sum_probs=70.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .++++|+|+.+|++..+..+.. ...++.++|..++.++++++++.++++.|..++.+.++|+|+.|.++|+|
T Consensus 28 ~~v~d~-~~~~~G~v~~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi 105 (113)
T cd04607 28 VLVVDE-NGRLLGTVTDGDIRRALLKGLS-LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLA 105 (113)
T ss_pred EEEECC-CCCEEEEEEcHHHHHHHhcCCC-cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEE
Confidence 366665 3789999999999876543322 13458888977888999999999999999999999999999889999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 106 t~~di~~ 112 (113)
T cd04607 106 TLDDLLS 112 (113)
T ss_pred EhHHhcc
Confidence 9999863
No 23
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.05 E-value=1.6e-09 Score=82.36 Aligned_cols=83 Identities=24% Similarity=0.445 Sum_probs=70.6
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++++|+++.+|++.....+. ...++.+++.+++.+++++.++.++++.|.+.+.+..+|+|++|.++|+|
T Consensus 27 ~~v~~~--~~~~G~v~~~~l~~~~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i 102 (110)
T cd04588 27 APVVDD--GKLVGIVTLSDIAHAIARGL--ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGII 102 (110)
T ss_pred EEEeeC--CEEEEEEEHHHHHHHHhccc--cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEE
Confidence 477776 78999999999997654432 12467888878889999999999999999999999999999889999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 103 ~~~dl~~ 109 (110)
T cd04588 103 TRTDILR 109 (110)
T ss_pred EhHHhhc
Confidence 9999874
No 24
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=2e-09 Score=83.22 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=71.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCc---------ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL---------LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~---------~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
+||++++ ++++|+++.+|++..+..... ....++.+++.+++.++++++++.++++.|++.+.+.++|+|
T Consensus 27 ~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04803 27 LPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVD 105 (122)
T ss_pred ccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence 5888753 789999999999876542210 023468888988899999999999999999999999999999
Q ss_pred CCCCEEEEEcchhHHH
Q 041526 72 EYGGTVGVVTLEDVVE 87 (252)
Q Consensus 72 E~G~~vGIVTleDIle 87 (252)
++|.++|+||..|++.
T Consensus 106 ~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 106 DKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCCEEEEEEHHHhhc
Confidence 9899999999999874
No 25
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.03 E-value=2e-09 Score=81.90 Aligned_cols=85 Identities=45% Similarity=0.821 Sum_probs=70.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||++++.+.++|+++.+||+.....+.. ...+..++ +++.++++++++.++++.|..++.+.++|+|+.|.++|+|
T Consensus 27 ~~v~~~~~~~~~G~v~~~~l~~~~~~~~~--~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi 103 (111)
T cd04590 27 FPVYDGDLDNIIGVVHVKDLLRALAEGEE--DLDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLV 103 (111)
T ss_pred EEEECCCCceEEEEEEHHHHHHHHHcCCC--cCCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEe
Confidence 47776533689999999999987653321 13466666 6889999999999999999999999999999999999999
Q ss_pred cchhHHHH
Q 041526 81 TLEDVVEE 88 (252)
Q Consensus 81 TleDIlee 88 (252)
|..|+++|
T Consensus 104 t~~di~~~ 111 (111)
T cd04590 104 TLEDILEE 111 (111)
T ss_pred EHHHhhcC
Confidence 99999764
No 26
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.03 E-value=2.2e-09 Score=81.72 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=71.2
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||++++ ++++|+|+.++++..+.........++.++|.+++.++++++++.++++.|..++.+.++|+|+.|.++|+|
T Consensus 28 ~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~i 106 (114)
T cd04604 28 TAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVL 106 (114)
T ss_pred EEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEE
Confidence 4777753 789999999999876653321122358889988889999999999999999999999999999889999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..||+.
T Consensus 107 t~~di~~ 113 (114)
T cd04604 107 HIHDLLR 113 (114)
T ss_pred EHHHhhc
Confidence 9999874
No 27
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.02 E-value=2e-09 Score=81.94 Aligned_cols=84 Identities=26% Similarity=0.410 Sum_probs=69.9
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++++|+++.+|++..+.........++.+++.+++.++++++++.++++.|++.+.+.++|+|+ |.++|++
T Consensus 27 i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gii 103 (111)
T cd04800 27 LLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVI 103 (111)
T ss_pred EEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEE
Confidence 478876 7999999999998654332211234588888889999999999999999999999988999987 9999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 104 t~~di~~ 110 (111)
T cd04800 104 SATDLLR 110 (111)
T ss_pred EHHHhhc
Confidence 9999874
No 28
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.02 E-value=1.7e-09 Score=84.03 Aligned_cols=86 Identities=15% Similarity=0.317 Sum_probs=66.9
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCc-ccccchhhh------hcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-LESTKVADM------AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY 73 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-~~~~~l~~~------~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~ 73 (252)
+||+++ .++++|+++.+||+..+..+.. ....++... +..++.++++++++.++++.|.+++.+.++|+|++
T Consensus 27 ~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~ 105 (120)
T cd04641 27 LPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN 105 (120)
T ss_pred eeEECC-CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCC
Confidence 589876 4789999999999976543321 001123332 22456899999999999999999999999999998
Q ss_pred CCEEEEEcchhHHH
Q 041526 74 GGTVGVVTLEDVVE 87 (252)
Q Consensus 74 G~~vGIVTleDIle 87 (252)
|.++|+||..|+++
T Consensus 106 ~~~~Givt~~di~~ 119 (120)
T cd04641 106 KRVEGIISLSDILQ 119 (120)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999875
No 29
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.02 E-value=2.9e-09 Score=80.69 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=70.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++++|+++.+||+.....+.. ....+.+++.+++.++++++++.++++.|++++.+.++|+|+.|.+.|+|
T Consensus 27 ~~v~~~--~~~~G~v~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i 103 (111)
T cd04612 27 YPVVDD--GRLVGIVTLADIRRVPAEGRE-ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIV 103 (111)
T ss_pred ceEeeC--CeEEEEEEHHHHHHHHhcCcc-cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEE
Confidence 588876 789999999999875543221 11246777888999999999999999999999999999999889999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 104 t~~di~~ 110 (111)
T cd04612 104 SRSDLLR 110 (111)
T ss_pred EHHHhhh
Confidence 9999874
No 30
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.02 E-value=2.3e-09 Score=82.72 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=71.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHc-CCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQK-GELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~-~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
+||+++ .++++|+|+.+|++..+.. .......++.++|.+++.++++++++.++++.|.+++.+..+|+|+.|.++|+
T Consensus 27 ~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gv 105 (114)
T cd04619 27 VVVCDP-HGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGV 105 (114)
T ss_pred EEEECC-CCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEE
Confidence 477765 3789999999999875543 11112356888998899999999999999999999999999999988999999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|+++
T Consensus 106 i~~~dl~~ 113 (114)
T cd04619 106 LNARDALK 113 (114)
T ss_pred EEhHhhcc
Confidence 99999874
No 31
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.02 E-value=2.3e-09 Score=81.72 Aligned_cols=84 Identities=31% Similarity=0.357 Sum_probs=69.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++++|+++.+|++..+..+......++.++|.+++.++++++++.++++.|.+++.+.++|+|+ |.++|+|
T Consensus 27 ~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~i 103 (111)
T cd04589 27 LLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVL 103 (111)
T ss_pred EEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEE
Confidence 467765 6899999999998765433211234688889788999999999999999999999999999986 9999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|+++
T Consensus 104 t~~dl~~ 110 (111)
T cd04589 104 EQTDLLS 110 (111)
T ss_pred EhHHhhc
Confidence 9999874
No 32
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.01 E-value=2e-09 Score=82.05 Aligned_cols=84 Identities=18% Similarity=0.327 Sum_probs=69.7
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .++++|+++.+|++........ ...++.++|.+++.++++++++.+++..|++++.+.++|+|+ |.++|+|
T Consensus 27 ~~v~d~-~~~~~G~v~~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~i 103 (111)
T cd04626 27 IIVKDN-EEKLKGVVTFTDILDLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVV 103 (111)
T ss_pred EEEEcC-CCCEEEEEehHHhHHHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEE
Confidence 478865 4789999999999865433211 124588888888999999999999999999999999999998 9999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|+++
T Consensus 104 t~~di~~ 110 (111)
T cd04626 104 RTKDILD 110 (111)
T ss_pred EhHHhcc
Confidence 9999874
No 33
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.01 E-value=2.7e-09 Score=81.25 Aligned_cols=82 Identities=23% Similarity=0.313 Sum_probs=70.2
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++.+|+|+..|++.....+. ...++.++|.+++.++++++++.+++..|++.+.+.++|+| .|.++|+|
T Consensus 28 ~~V~d~--~~~~G~v~~~dl~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvv 102 (110)
T cd04595 28 LPVVEG--GRVVGIISRRDVEKALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIV 102 (110)
T ss_pred eeEeeC--CEEEEEEEHHHHHHHHhccc--ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEE
Confidence 588876 78999999999987654321 23568888988999999999999999999999999899998 79999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 103 t~~di~~ 109 (110)
T cd04595 103 TRTDLLR 109 (110)
T ss_pred EhHHhhc
Confidence 9999874
No 34
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.01 E-value=2e-09 Score=84.03 Aligned_cols=86 Identities=14% Similarity=0.253 Sum_probs=66.4
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcc-c--c------cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELL-E--S------TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~-~--~------~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
+||++++.++++|+|+.+|+++.+..+... . . .....++.+++.++.+++++.++++.|.+++.+.++|+|
T Consensus 27 ~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 106 (123)
T cd04627 27 VAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVD 106 (123)
T ss_pred EEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC
Confidence 478876436899999999998765332100 0 0 011134567888999999999999999999999999999
Q ss_pred CCCCEEEEEcchhHH
Q 041526 72 EYGGTVGVVTLEDVV 86 (252)
Q Consensus 72 E~G~~vGIVTleDIl 86 (252)
++|.++|+||+.|+-
T Consensus 107 ~~~~~vGiit~~di~ 121 (123)
T cd04627 107 NQGNLIGNISVTDVR 121 (123)
T ss_pred CCCcEEEEEeHHHhh
Confidence 999999999999973
No 35
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=2.5e-09 Score=84.57 Aligned_cols=85 Identities=25% Similarity=0.416 Sum_probs=70.2
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccc--------------------cchhhhhcCCceecCCCCcHHHHHHHHH
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLES--------------------TKVADMAHKPAYFVPDSMSVWNLLREFR 60 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~--------------------~~l~~~~~r~~~~Vpe~~~l~~lL~~mr 60 (252)
+||+++ .++++|+++.+|++..+........ .++.+++.+++.++++++++.++++.|.
T Consensus 27 ~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~ 105 (132)
T cd04636 27 VPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMS 105 (132)
T ss_pred cceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHH
Confidence 588875 3789999999999876543221111 1677888888999999999999999999
Q ss_pred HcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 61 IRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 61 ~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
+.+.+.++|+|+ |.++|+||..|+++
T Consensus 106 ~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 106 KKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 999999999998 99999999999975
No 36
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.00 E-value=2e-09 Score=82.64 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=67.7
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG 78 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG 78 (252)
+||+++ .++++|+|+.+||+....... ...++.++|.. ++..+.+++++.++++.|++++.+.++|+|+.|.++|
T Consensus 28 ~~V~d~-~~~~~G~v~~~dl~~~~~~~~--~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~G 104 (114)
T cd04801 28 FVVVDN-EGRYVGIISLADLRAIPTSQW--AQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIG 104 (114)
T ss_pred EEEEcC-CCcEEEEEEHHHHHHHHHhhc--cccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEE
Confidence 478865 478999999999987654221 12457777742 2568999999999999999999999999998899999
Q ss_pred EEcchhHHH
Q 041526 79 VVTLEDVVE 87 (252)
Q Consensus 79 IVTleDIle 87 (252)
+||..||+.
T Consensus 105 vl~~~di~~ 113 (114)
T cd04801 105 LITEADLLR 113 (114)
T ss_pred EEeccceec
Confidence 999999864
No 37
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.99 E-value=3.1e-09 Score=82.43 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=69.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCC---CC
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY---GG 75 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~---G~ 75 (252)
+||.++ .++++|+|+.+|++.+...+.......+.++|.+ ++.++++++++.++++.|.+++.+..+|+|+. |.
T Consensus 27 ~~V~d~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~ 105 (118)
T cd04617 27 LFVVDE-DGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLE 105 (118)
T ss_pred EEEEcC-CCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccce
Confidence 467765 3679999999999877643322223457788854 67899999999999999999999999999887 68
Q ss_pred EEEEEcchhHHH
Q 041526 76 TVGVVTLEDVVE 87 (252)
Q Consensus 76 ~vGIVTleDIle 87 (252)
++|+||..|++.
T Consensus 106 l~Gvit~~~l~~ 117 (118)
T cd04617 106 VIGRITKTNITK 117 (118)
T ss_pred EEEEEEhhheec
Confidence 999999999863
No 38
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.99 E-value=3.7e-09 Score=81.11 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=70.6
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCc----------ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL----------LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL 70 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~----------~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV 70 (252)
+||+++ ++++|+++.+|++........ ....++.++|.+++.++++++++.+++..|++.+.+.++|+
T Consensus 27 ~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 104 (122)
T cd04585 27 LPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVV 104 (122)
T ss_pred eeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEE
Confidence 588876 799999999999876532110 01245778888889999999999999999999999999999
Q ss_pred cCCCCEEEEEcchhHHH
Q 041526 71 NEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 71 DE~G~~vGIVTleDIle 87 (252)
|++|.++|+||..|+++
T Consensus 105 ~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 105 DDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCCcEEEEEEHHHhhh
Confidence 98899999999999975
No 39
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.98 E-value=2.6e-09 Score=83.81 Aligned_cols=86 Identities=24% Similarity=0.401 Sum_probs=67.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccc-------------cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLES-------------TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMA 67 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~-------------~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~A 67 (252)
+||++++ ++++|+|+.+|++.....+..... ......+.+++.++++++++.++++.|.+++.+.+
T Consensus 27 i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l 105 (126)
T cd04642 27 LPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRV 105 (126)
T ss_pred ccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEE
Confidence 5788764 789999999999875532211001 01123456788999999999999999999999999
Q ss_pred EEecCCCCEEEEEcchhHHH
Q 041526 68 VVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 68 iVVDE~G~~vGIVTleDIle 87 (252)
+|+|++|.++|+||..|++.
T Consensus 106 ~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 106 WVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred EEECCCCCEEEEEEHHHHhc
Confidence 99999999999999999874
No 40
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.98 E-value=3.6e-09 Score=79.91 Aligned_cols=83 Identities=28% Similarity=0.344 Sum_probs=66.4
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++++|+++.+|+++.+.........++.+++.+++.++++++++.++++.|++ ..+ ++|+|+.|.++|+|
T Consensus 27 ~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~-~~vv~~~~~~~Gvv 102 (110)
T cd04609 27 LPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELSELLDR-GNV-AVVVDEGGKFVGII 102 (110)
T ss_pred eeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CCc-eeEEecCCeEEEEE
Confidence 588875 78999999999997654332111245778888888999999999999999998 443 67888889999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 103 t~~di~~ 109 (110)
T cd04609 103 TRADLLK 109 (110)
T ss_pred eHHHhhc
Confidence 9999874
No 41
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.98 E-value=3.2e-09 Score=80.95 Aligned_cols=82 Identities=24% Similarity=0.337 Sum_probs=69.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .++++|+|+.++++.. . ...++.+++..++.++++++++.++++.|...+.+.++|+|++|.++|+|
T Consensus 28 ~~vvd~-~~~~~G~v~~~~l~~~--~----~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi 100 (109)
T cd04606 28 IYVVDE-EGRLLGVVSLRDLLLA--D----PDTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGII 100 (109)
T ss_pred EEEECC-CCCEEEEEEHHHHhcC--C----CcchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEE
Confidence 366764 3789999999999752 1 13458888877789999999999999999999999999999999999999
Q ss_pred cchhHHHHH
Q 041526 81 TLEDVVEEI 89 (252)
Q Consensus 81 TleDIleeI 89 (252)
|..|+++++
T Consensus 101 t~~dll~~~ 109 (109)
T cd04606 101 TVDDVIDVI 109 (109)
T ss_pred EhHHhhhhC
Confidence 999999763
No 42
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.98 E-value=2.2e-09 Score=81.71 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=69.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .+.++|+|+.+|++... ...++.++|.+++.++++++++.++++.|...+...++|+|+.|.++|++
T Consensus 28 ~~V~d~-~~~~~G~v~~~~l~~~~------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~i 100 (108)
T cd04596 28 FPVVDE-KNKVVGIVTSKDVAGKD------PDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGII 100 (108)
T ss_pred eeEECC-CCeEEEEecHHHHhccc------ccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEE
Confidence 588875 47899999999997531 12458888878889999999999999999999999999999999999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|+++
T Consensus 101 t~~di~~ 107 (108)
T cd04596 101 SRQDVLK 107 (108)
T ss_pred EHHHhhc
Confidence 9999875
No 43
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.97 E-value=2.9e-09 Score=81.92 Aligned_cols=84 Identities=25% Similarity=0.346 Sum_probs=69.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||.++ .++++|+|+.+|++.... .. ....++.++|..++.++++++++.++++.|.+++.+..+|+|+.|.++|+|
T Consensus 27 ~~V~d~-~~~~~G~v~~~dl~~~~~-~~-~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Gii 103 (111)
T cd04603 27 VVVVDE-ENKVLGQVTLSDLLEIGP-ND-YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTI 103 (111)
T ss_pred EEEEcC-CCCEEEEEEHHHHHhhcc-cc-ccccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEE
Confidence 467765 478999999999986322 11 112457788888889999999999999999999999999999889999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 104 t~~di~~ 110 (111)
T cd04603 104 YERELLR 110 (111)
T ss_pred EhHHhhc
Confidence 9999874
No 44
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.97 E-value=3.8e-09 Score=84.89 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=70.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcc-----------------------cccchhhhhcCCceecCCCCcHHHHHH
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELL-----------------------ESTKVADMAHKPAYFVPDSMSVWNLLR 57 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~-----------------------~~~~l~~~~~r~~~~Vpe~~~l~~lL~ 57 (252)
+||+++ .++++|+|+.+|++..+...... ...++.++|.+++.++++++++.++++
T Consensus 27 l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 105 (135)
T cd04621 27 VIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAK 105 (135)
T ss_pred ceEECC-CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccccHHHhcCCCCeEECCCCCHHHHHH
Confidence 588875 47899999999999765422110 023588899778899999999999999
Q ss_pred HHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 58 EFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 58 ~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
.|.+++.+.++|+|+ |.++|+||..|+++
T Consensus 106 ~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 106 LMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred HHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 999999999999987 99999999999986
No 45
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.96 E-value=4.4e-09 Score=80.13 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=69.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccc-cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLES-TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~-~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
+||+++ ++++|+|+.+|++..+........ .++.++|.+++.++++++++.++++.|..++.+..+|+|++|.++|+
T Consensus 27 ~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gv 104 (113)
T cd04587 27 VLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGL 104 (113)
T ss_pred EEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEE
Confidence 467765 789999999999854432211111 46888888888999999999999999999998888899988999999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|++.
T Consensus 105 vs~~dl~~ 112 (113)
T cd04587 105 LDVTKLTH 112 (113)
T ss_pred EEHHHhcc
Confidence 99999864
No 46
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.96 E-value=2.4e-09 Score=81.67 Aligned_cols=85 Identities=22% Similarity=0.260 Sum_probs=69.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCC--cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE--LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG 78 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~--~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG 78 (252)
+||+++ .++++|+|+.+|++..+.... .....++.++|.+++.++++++++.++++.|.+++.+.++|+|+ |.++|
T Consensus 27 ~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G 104 (114)
T cd04629 27 GPVVDD-NGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVG 104 (114)
T ss_pred ccEECC-CCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEE
Confidence 578865 368999999999987553311 01234588888788899999999999999999999888889988 99999
Q ss_pred EEcchhHHH
Q 041526 79 VVTLEDVVE 87 (252)
Q Consensus 79 IVTleDIle 87 (252)
+||..|++.
T Consensus 105 vit~~di~~ 113 (114)
T cd04629 105 QISRRDVLR 113 (114)
T ss_pred EEEHHHHhc
Confidence 999999975
No 47
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.96 E-value=2.6e-09 Score=73.19 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=53.2
Q ss_pred hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
++++|.+++.++++++++.++++.|++++.+.++|+|+.|.++|+||..|++..+.+
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHHG
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhhC
Confidence 357888899999999999999999999999999999999999999999999998754
No 48
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.95 E-value=7.5e-09 Score=77.10 Aligned_cols=86 Identities=24% Similarity=0.338 Sum_probs=70.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||++++ ++++|+++.+|++.............+.+++..++.++++++++.++++.|...+.+.++|+|+.|.++|++
T Consensus 27 ~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i 105 (113)
T cd02205 27 LPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIV 105 (113)
T ss_pred EEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence 4788764 799999999999876643221111125667878899999999999999999999999999999999999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|+++
T Consensus 106 ~~~dl~~ 112 (113)
T cd02205 106 TRSDILR 112 (113)
T ss_pred EHHHhhc
Confidence 9999874
No 49
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.94 E-value=4.5e-09 Score=80.44 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=67.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCccc-----ccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCC
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLE-----STKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGG 75 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~-----~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~ 75 (252)
+||+++ .++++|+|+.+|++..+....... ..++.++|.+++.++++++++.+++..|.+.+ +++|+|++|.
T Consensus 27 ~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~ 103 (116)
T cd04643 27 IPVLDK-EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGI 103 (116)
T ss_pred eeeECC-CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCe
Confidence 588875 468999999999987654321100 24578888778999999999999999998754 5788999999
Q ss_pred EEEEEcchhHHH
Q 041526 76 TVGVVTLEDVVE 87 (252)
Q Consensus 76 ~vGIVTleDIle 87 (252)
++|+||..|++.
T Consensus 104 ~~Gvit~~dil~ 115 (116)
T cd04643 104 FIGIITRREILK 115 (116)
T ss_pred EEEEEEHHHhhc
Confidence 999999999875
No 50
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.94 E-value=7e-09 Score=78.31 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=68.9
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||++++ ++++|+|+.+|++.....+ .++.++|.+.+.++++++++.+++..|+..+.+.++|+|+.|.+.|+|
T Consensus 28 ~~v~d~~-~~~~G~v~~~dl~~~~~~~-----~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvi 101 (109)
T cd04583 28 LLVVDKD-NKLLGIVSLESLEQAYKEA-----KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLI 101 (109)
T ss_pred EEEEcCC-CcEEEEEEHHHHHHHhhcC-----CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEE
Confidence 4788763 7899999999998654321 347778878889999999999999999999999999999999999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 102 t~~~l~~ 108 (109)
T cd04583 102 TRSSLVD 108 (109)
T ss_pred ehHHhhc
Confidence 9999874
No 51
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.94 E-value=7e-09 Score=78.98 Aligned_cols=85 Identities=29% Similarity=0.415 Sum_probs=69.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHH-HHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDY-VQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~-~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
+||+++ ++++|+++.+|++.. +..+......++.++|.+.+.++++++++.++++.|+..+.+.++|+|+.|.+.|+
T Consensus 27 ~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~ 104 (113)
T cd04622 27 LPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGI 104 (113)
T ss_pred EEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEE
Confidence 478876 899999999998733 32222112234888888888999999999999999999999999999988999999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|+++
T Consensus 105 it~~di~~ 112 (113)
T cd04622 105 VSLGDLAR 112 (113)
T ss_pred EEHHHhhc
Confidence 99999875
No 52
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.93 E-value=5.8e-09 Score=78.69 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=67.8
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++++|+++.+||+.. . ...++.++|...+.++++++++.++++.|++++.+.++|+|+.|.++|+|
T Consensus 28 ~~v~d~--~~~~g~v~~~~l~~~--~----~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi 99 (107)
T cd04610 28 FPVVDN--GKVVGIVSARDLLGK--D----PDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGII 99 (107)
T ss_pred eeEeEC--CEEEEEEEHHHhhcc--C----ccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEE
Confidence 477775 789999999999853 1 12458888878889999999999999999999999999999999999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 100 ~~~di~~ 106 (107)
T cd04610 100 TNTDVIR 106 (107)
T ss_pred EHHHhhc
Confidence 9999874
No 53
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.93 E-value=5.6e-09 Score=80.76 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=70.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcC----Cc-----ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKG----EL-----LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~----~~-----~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
+||+++ .++++|+++.+|++...... .. ....++.+++.+++.++++++++.+++..|++.+.+.++|+|
T Consensus 27 ~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd 105 (122)
T cd04635 27 LPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVN 105 (122)
T ss_pred ccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence 588865 47899999999998642100 00 013457788878889999999999999999999999999999
Q ss_pred CCCCEEEEEcchhHHH
Q 041526 72 EYGGTVGVVTLEDVVE 87 (252)
Q Consensus 72 E~G~~vGIVTleDIle 87 (252)
++|.+.|++|..|+++
T Consensus 106 ~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 106 EKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCcEEEEEEhHHhhc
Confidence 9999999999999985
No 54
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.93 E-value=2.2e-09 Score=84.92 Aligned_cols=87 Identities=21% Similarity=0.244 Sum_probs=69.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHH---------HcCCceEEEec
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFR---------IRKVHMAVVLN 71 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr---------~~~~~~AiVVD 71 (252)
+||++++ ++++|+++.+|++..+..+......++.++|.+++.++.++.++.++.+.|. ..+.+..+|+|
T Consensus 28 ~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 106 (124)
T cd04608 28 LPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE 106 (124)
T ss_pred EEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc
Confidence 5888753 7899999999998765433222346799999999999999999999998653 23566677888
Q ss_pred CCCCEEEEEcchhHHHH
Q 041526 72 EYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 72 E~G~~vGIVTleDIlee 88 (252)
++|.++||||..|++..
T Consensus 107 ~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 107 KQEKPIGIVTKIDLLSY 123 (124)
T ss_pred cccceEEEEehhHhhhh
Confidence 88999999999999875
No 55
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.91 E-value=5.3e-09 Score=83.05 Aligned_cols=85 Identities=25% Similarity=0.371 Sum_probs=69.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCC----------------------cccccchhhhhcCCceecCCCCcHHHHHHH
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE----------------------LLESTKVADMAHKPAYFVPDSMSVWNLLRE 58 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~----------------------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~ 58 (252)
+||+++ .++++|+|+.+|++.....+. .....++.++|.+++.++++++++.+++..
T Consensus 28 ~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 106 (135)
T cd04586 28 LPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAEL 106 (135)
T ss_pred ceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHH
Confidence 588875 478999999999986532210 001245788888889999999999999999
Q ss_pred HHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 59 FRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 59 mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
|++.+.+..+|+| +|.++|+||..|+++
T Consensus 107 ~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 107 MEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 9999999999999 899999999999875
No 56
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.90 E-value=9e-09 Score=80.69 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=68.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCC-------------cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-------------LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMA 67 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-------------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~A 67 (252)
+||++++ ++++|+++.+|++..+.... ......+.++|.+++.++++++++.+++..|.+.+.+.+
T Consensus 27 ~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~ 105 (128)
T cd04632 27 LPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSV 105 (128)
T ss_pred EEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeE
Confidence 5788764 78999999999986542110 001235788888889999999999999999999988888
Q ss_pred EEec--CCCCEEEEEcchhHHH
Q 041526 68 VVLN--EYGGTVGVVTLEDVVE 87 (252)
Q Consensus 68 iVVD--E~G~~vGIVTleDIle 87 (252)
+|++ +.|.++|+||.+|+++
T Consensus 106 ~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 106 VVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred eEeccCCCCcEEEEEEhHhhhc
Confidence 8773 4699999999999875
No 57
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.90 E-value=5.2e-09 Score=78.67 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=67.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++++|+++.+|++.... ...+.++|..++.++++++++.++++.|.+++...++|+|+ |.++|+|
T Consensus 27 ~~V~d~--~~~~Giv~~~~l~~~~~------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~i 97 (105)
T cd04599 27 LPVVED--GKLVGIITSRDVRRAHP------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGII 97 (105)
T ss_pred EEEEEC--CEEEEEEehHHhhcccc------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEE
Confidence 478863 78999999999986421 23477888888999999999999999999999999999998 9999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 98 t~~~l~~ 104 (105)
T cd04599 98 TKGTIAL 104 (105)
T ss_pred EHHHhcc
Confidence 9999874
No 58
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.89 E-value=7e-09 Score=78.72 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=65.6
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ ++++|+++.+|++.... .++.++|...+.+++++.++.+++..|.+++.+.++|+|+ |.++|+|
T Consensus 27 ~~V~d~--~~~~G~v~~~~l~~~~~-------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~iGvi 96 (104)
T cd04594 27 LPVVDY--NKFLGAVYLKDIENATY-------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-GKFKGIV 96 (104)
T ss_pred EEEEEC--CEEEEEEEHHHHhhhcc-------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC-CEEEEEE
Confidence 588875 78999999999985321 2356677788899999999999999999999999999984 9999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 97 t~~dl~~ 103 (104)
T cd04594 97 TLDSILD 103 (104)
T ss_pred EHHHhhc
Confidence 9999874
No 59
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.89 E-value=7.4e-09 Score=81.36 Aligned_cols=86 Identities=22% Similarity=0.325 Sum_probs=64.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHH-----HHcC-CcccccchhhhhcCCceec------CCCCcHHHHHHHHHHcCCceEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDY-----VQKG-ELLESTKVADMAHKPAYFV------PDSMSVWNLLREFRIRKVHMAV 68 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~-----~~~~-~~~~~~~l~~~~~r~~~~V------pe~~~l~~lL~~mr~~~~~~Ai 68 (252)
+||+++ .++++|+++.+|++.. ...+ ......++.++|.++...+ ++++++.++++.|.+++.+.++
T Consensus 27 ~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lp 105 (126)
T cd04640 27 LLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHAL 105 (126)
T ss_pred EEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEE
Confidence 366664 4789999999999852 2221 1112345888885443332 3688999999999999999999
Q ss_pred EecCC-CCEEEEEcchhHHH
Q 041526 69 VLNEY-GGTVGVVTLEDVVE 87 (252)
Q Consensus 69 VVDE~-G~~vGIVTleDIle 87 (252)
|+|+. |.++|+||..|++.
T Consensus 106 Vvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 106 VVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred EEECCCCEEEEEEeHHHHhh
Confidence 99985 89999999999975
No 60
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.88 E-value=7.1e-09 Score=78.43 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=66.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCC-CCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPD-SMSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe-~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
+||++++ ++++|+++.++++.... ...++.++|...+.++.. ++++.++++.|++.+.+.++|+|+.|.++|+
T Consensus 28 ~~V~d~~-~~~~G~v~~~~l~~~~~-----~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gv 101 (110)
T cd04601 28 LPVVDDD-GKLVGIVTNRDLRFETD-----LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGL 101 (110)
T ss_pred EEEEcCC-CEEEEEEEhhHeeeccc-----CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEE
Confidence 4788764 78999999999874321 134678888665566666 9999999999999999999999999999999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|+++
T Consensus 102 i~~~dil~ 109 (110)
T cd04601 102 ITVKDIEK 109 (110)
T ss_pred EEhhhhhc
Confidence 99999875
No 61
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.87 E-value=1.4e-08 Score=76.58 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=66.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .++++|+++.+|++.... .++.+++.+.+.++++++++.++++.|.+++...++|+|+.|.++|+|
T Consensus 27 ~~v~d~-~g~~~Giv~~~dl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi 98 (106)
T cd04582 27 LTVVDA-DGQPLGFVTRREAARASG-------GCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEV 98 (106)
T ss_pred EEEECC-CCCEEEEEeHHHHHHhcc-------cchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEE
Confidence 467764 478999999999986421 236677866778899999999999999999999999999999999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 99 ~~~~l~~ 105 (106)
T cd04582 99 TQRSIAD 105 (106)
T ss_pred EHHHhhc
Confidence 9999874
No 62
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.86 E-value=1.3e-08 Score=78.80 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=69.8
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCC--------c--ccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE--------L--LESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL 70 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~--------~--~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV 70 (252)
+||+++ ++++|+++.++++..+.... . ....++.++|.+++.++++++++.++++.|++++...++|+
T Consensus 27 ~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv 104 (122)
T cd04637 27 LLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVV 104 (122)
T ss_pred EEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEE
Confidence 588885 78999999999987543210 0 01235778888889999999999999999999999999999
Q ss_pred cCCCCEEEEEcchhHHH
Q 041526 71 NEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 71 DE~G~~vGIVTleDIle 87 (252)
|+.|.++|++|..|+++
T Consensus 105 ~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 105 DENGQLIGIITWKDLLK 121 (122)
T ss_pred CCCCCEEEEEEHHHhhh
Confidence 99899999999999975
No 63
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.85 E-value=2e-08 Score=76.45 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=68.4
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCC-cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE-LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~-~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
+||+++ ++++|+++.+|++..+..+. .....++.+++.+++.++++++++.++++.|.+.+.+.++|+|++ .++|+
T Consensus 27 ~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gv 103 (112)
T cd04802 27 LIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGI 103 (112)
T ss_pred EEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEE
Confidence 478875 38999999999987553221 112345888887788899999999999999999999888999875 89999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|++.
T Consensus 104 i~~~di~~ 111 (112)
T cd04802 104 VTTTDIVM 111 (112)
T ss_pred EEhhhhhc
Confidence 99999874
No 64
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.84 E-value=1.3e-08 Score=78.52 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=69.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCC----------cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEe
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE----------LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVL 70 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~----------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVV 70 (252)
+||+++ ++++|+++..+++..+.... .....++.++|.+++.++++++++.+++..|.+.+.+.++|+
T Consensus 27 i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv 104 (121)
T cd04633 27 LPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVV 104 (121)
T ss_pred eEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEE
Confidence 588875 79999999999986543211 001235778888889999999999999999999999999999
Q ss_pred cCCCCEEEEEcchhHHH
Q 041526 71 NEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 71 DE~G~~vGIVTleDIle 87 (252)
|+ |.++|+||..|++.
T Consensus 105 ~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 105 DD-GKLVGIVTRTDILR 120 (121)
T ss_pred EC-CEEEEEEEHHHhhc
Confidence 98 99999999999874
No 65
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.84 E-value=1.3e-08 Score=77.57 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=60.7
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGI 79 (252)
+||++++.++++|+|+.+|++..+. +.++.+++++.++++.|.+++.+..+|+|+. |.++|+
T Consensus 27 ~~Vvd~~~~~~~Givt~~Dl~~~~~-----------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~gi 89 (98)
T cd04618 27 APLWDSRKQQFVGMLTITDFILILR-----------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYI 89 (98)
T ss_pred EEEEeCCCCEEEEEEEHHHHhhhee-----------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEE
Confidence 5888764468999999999875311 6789999999999999999999999999987 999999
Q ss_pred EcchhHHH
Q 041526 80 VTLEDVVE 87 (252)
Q Consensus 80 VTleDIle 87 (252)
||..|++.
T Consensus 90 it~~d~~~ 97 (98)
T cd04618 90 LTSRRILK 97 (98)
T ss_pred eehhhhhc
Confidence 99999863
No 66
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.83 E-value=1.9e-08 Score=77.22 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=63.7
Q ss_pred CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526 1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG 78 (252)
Q Consensus 1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG 78 (252)
+||+++. .++++|+|+.+|+...... +|.+++.++++++++.++++.|++++.+.++|++ .|.++|
T Consensus 28 ~~V~~~~~~~~~~~G~v~~~dl~~~~~~-----------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~G 95 (105)
T cd04591 28 FPVVDSTEESPRLVGYILRSQLVVALKN-----------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVG 95 (105)
T ss_pred cceEcCCCCCCEEEEEEeHHHHHHHHHH-----------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEE
Confidence 5888753 3789999999999865421 5667888999999999999999999999999984 699999
Q ss_pred EEcchhHHH
Q 041526 79 VVTLEDVVE 87 (252)
Q Consensus 79 IVTleDIle 87 (252)
+||..|+++
T Consensus 96 vvt~~dl~~ 104 (105)
T cd04591 96 IITRKDLLK 104 (105)
T ss_pred EEEhhhhhc
Confidence 999999875
No 67
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.82 E-value=2.3e-08 Score=76.98 Aligned_cols=85 Identities=25% Similarity=0.305 Sum_probs=68.9
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCC---------cccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGE---------LLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~---------~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
+||++++ ++++|+|+.++|+....... .....++.++|..++.++++++++.++++.|++.+.+.++|+|
T Consensus 27 ~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~ 105 (121)
T cd04584 27 LPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE 105 (121)
T ss_pred ccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee
Confidence 5788764 78999999999986432100 0112457788888899999999999999999999988889998
Q ss_pred CCCCEEEEEcchhHHH
Q 041526 72 EYGGTVGVVTLEDVVE 87 (252)
Q Consensus 72 E~G~~vGIVTleDIle 87 (252)
+ |.++|+||..|+++
T Consensus 106 ~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 106 D-GRLVGIITETDLLR 120 (121)
T ss_pred C-CEEEEEEEHHHhhc
Confidence 7 99999999999875
No 68
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.81 E-value=2.2e-08 Score=75.82 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=66.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||++++ ++++|+++.++++... . ...+.++|.+++.++++++++.+++..|++++.+.++|+|. |.++|+|
T Consensus 27 ~~v~~~~-~~~~g~v~~~~l~~~~--~----~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~i 98 (106)
T cd04638 27 VPVVKKS-GELVGIITRKDLLRNP--E----EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIV 98 (106)
T ss_pred EEEEcCC-CcEEEEEEHHHHHhcc--c----cchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEE
Confidence 4788764 7899999999997421 1 13467778788899999999999999999999999999985 8999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|+++
T Consensus 99 t~~d~~~ 105 (106)
T cd04638 99 TVADIVR 105 (106)
T ss_pred EHHHhhc
Confidence 9999875
No 69
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.81 E-value=2.9e-08 Score=76.39 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=66.0
Q ss_pred CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCC--CCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526 1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPD--SMSVWNLLREFRIRKVHMAVVLNEYGGT 76 (252)
Q Consensus 1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe--~~~l~~lL~~mr~~~~~~AiVVDE~G~~ 76 (252)
+||+++. .++++|+|+.+|++... .. ..++.++|.+.+..+.. ++++.++++.|+.++.+..+|+|+.|.+
T Consensus 28 ~~V~d~~~~~~~~~G~v~~~dl~~~~-~~----~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~ 102 (114)
T cd04602 28 IPVTEDGKSGGKLLGIVTSRDIDFLT-DS----ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGEL 102 (114)
T ss_pred eEEeeCCCcCCEEEEEEEhHHhhhhh-cc----CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeE
Confidence 4777752 47899999999987432 21 23478888766666745 9999999999999999999999999999
Q ss_pred EEEEcchhHHH
Q 041526 77 VGVVTLEDVVE 87 (252)
Q Consensus 77 vGIVTleDIle 87 (252)
+|+||..|+++
T Consensus 103 ~Gvit~~di~~ 113 (114)
T cd04602 103 VALVTRSDLKK 113 (114)
T ss_pred EEEEEHHHhhc
Confidence 99999999874
No 70
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.78 E-value=2.7e-08 Score=96.12 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=70.9
Q ss_pred eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526 2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT 81 (252)
Q Consensus 2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT 81 (252)
||.+ +.++++|+|+.+|++.+ . ...++.++|.+++.++++++++.++++.|++++.+.++|+|++|.++|+||
T Consensus 171 ~Vvd-~~~~l~GvV~l~dLl~a--~----~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt 243 (449)
T TIGR00400 171 YVTN-ESKHLKGVLSIRDLILA--K----PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVT 243 (449)
T ss_pred EEEC-CCCeEEEEEEHHHHhcC--C----CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEE
Confidence 3444 35789999999999753 1 134688999777888999999999999999999999999999999999999
Q ss_pred chhHHHHHHhh
Q 041526 82 LEDVVEEIVGE 92 (252)
Q Consensus 82 leDIleeIvGe 92 (252)
.+|+++.+..+
T Consensus 244 ~~Dil~~l~~~ 254 (449)
T TIGR00400 244 VDDIIDVIQSE 254 (449)
T ss_pred HHHHHHHHHhh
Confidence 99999988543
No 71
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.78 E-value=4.2e-08 Score=79.23 Aligned_cols=84 Identities=25% Similarity=0.377 Sum_probs=69.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCc--------------------------------ccccchhhhhcCCceecCC
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL--------------------------------LESTKVADMAHKPAYFVPD 48 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~--------------------------------~~~~~l~~~~~r~~~~Vpe 48 (252)
+||+++ ++++|+++.+|++..+..... ....++.++|.+++.++++
T Consensus 27 ~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~ 104 (143)
T cd04634 27 APVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISP 104 (143)
T ss_pred ceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHHHHHHHHhcCCHHHHcCCCCeEECC
Confidence 588885 789999999999876532110 0123577788888999999
Q ss_pred CCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 49 SMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 49 ~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
++++.+++..|++.+.+.++|+|. |.++|+||..|+++
T Consensus 105 ~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 105 DASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 999999999999999988889987 99999999999875
No 72
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.75 E-value=6.3e-08 Score=73.68 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=64.7
Q ss_pred CCEEEEEEHHHHhHHHHcC-CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 9 DNIVGIAYAMDLLDYVQKG-ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 9 d~IvGiv~~kDll~~~~~~-~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
++++|+++.+|++..+... ......++.++|..++.++++++++.++++.|..++....+|+|+ |.++|+||..|++.
T Consensus 33 ~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 33 GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAK 111 (112)
T ss_pred CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhc
Confidence 7899999999998765432 111124588888777889999999999999999999988889985 99999999999874
No 73
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.73 E-value=6.2e-08 Score=74.52 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=66.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcC---CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCC---ceEEEecCCC
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKG---ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKV---HMAVVLNEYG 74 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~---~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~---~~AiVVDE~G 74 (252)
+||+++ ++++|+|+.+|++.++... ......++.++|..++.++++++++.+++..|.+.+. ..++|+|+.|
T Consensus 28 ~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~ 105 (119)
T cd04598 28 LAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEG 105 (119)
T ss_pred EEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCC
Confidence 478876 8999999999998654321 0001345888898888999999999999999988764 2345788889
Q ss_pred CEEEEEcchhHHH
Q 041526 75 GTVGVVTLEDVVE 87 (252)
Q Consensus 75 ~~vGIVTleDIle 87 (252)
.++|+||..|++.
T Consensus 106 ~~~Gvvs~~di~~ 118 (119)
T cd04598 106 RYLGIGTVKDLLR 118 (119)
T ss_pred eEEEEEEHHHHhc
Confidence 9999999999875
No 74
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.71 E-value=7.8e-08 Score=88.16 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=73.2
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .++++|+|+.+|+...+..+.. ...++.++|.+++.+++++.++.++++.|.+++....+|+|+.|.++|+|
T Consensus 233 ~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~-~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvI 310 (321)
T PRK11543 233 VAVCDA-QQQVQGVFTDGDLRRWLVGGGA-LTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAI 310 (321)
T ss_pred EEEEcC-CCcEEEEecHHHHHHHHhCCCC-cCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE
Confidence 578875 3789999999999876544321 23458899988899999999999999999999999999999889999999
Q ss_pred cchhHHHH
Q 041526 81 TLEDVVEE 88 (252)
Q Consensus 81 TleDIlee 88 (252)
|..|++.+
T Consensus 311 t~~di~~~ 318 (321)
T PRK11543 311 NLQDFYQA 318 (321)
T ss_pred EHHHHHhc
Confidence 99999864
No 75
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.70 E-value=5.2e-08 Score=95.04 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=72.5
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhc-CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAH-KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~-r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
+||+++ .++++|+|+.+||+... . ...++.++|. +++.++++++++.++++.|.+++.+.++|+|++|.++|+
T Consensus 121 lpVvd~-~g~lvGiVt~~DL~~~~--~---~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGi 194 (486)
T PRK05567 121 VPVVDE-NGKLVGIITNRDVRFET--D---LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGL 194 (486)
T ss_pred EEEEcc-CCEEEEEEEHHHhhhcc--c---CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence 589985 57999999999997432 1 1346888887 788999999999999999999999999999999999999
Q ss_pred EcchhHHHHH
Q 041526 80 VTLEDVVEEI 89 (252)
Q Consensus 80 VTleDIleeI 89 (252)
||..||++.+
T Consensus 195 IT~~DLl~~~ 204 (486)
T PRK05567 195 ITVKDIEKAE 204 (486)
T ss_pred EEhHHhhhhh
Confidence 9999999886
No 76
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.64 E-value=1.1e-07 Score=71.91 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=59.6
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .++++|+++.+|++... .+.++.++.++.++++.|++++.+.++|+|+.|.++|+|
T Consensus 27 ~~V~d~-~~~~~Giv~~~dl~~~~-----------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Gii 88 (96)
T cd04614 27 LPVLDD-DGKLSGIITERDLIAKS-----------------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLL 88 (96)
T ss_pred EEEECC-CCCEEEEEEHHHHhcCC-----------------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEE
Confidence 478865 37899999999997421 167899999999999999999999999999889999999
Q ss_pred cchhHHH
Q 041526 81 TLEDVVE 87 (252)
Q Consensus 81 TleDIle 87 (252)
|..|++.
T Consensus 89 t~~di~~ 95 (96)
T cd04614 89 RDHDLLK 95 (96)
T ss_pred EHHHhhc
Confidence 9999874
No 77
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.63 E-value=1.9e-07 Score=85.95 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=70.1
Q ss_pred eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526 2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT 81 (252)
Q Consensus 2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT 81 (252)
||+++ .++++|+|+.+|+.+.+..+......++.++|.+++.++.+++++.++++.|.+++.+..+|+| .|.++|+||
T Consensus 239 vVvd~-~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit 316 (326)
T PRK10892 239 VICDD-NMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLH 316 (326)
T ss_pred EEEcC-CCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEE
Confidence 45554 4789999999999876544322223568999988999999999999999999999999889887 489999999
Q ss_pred chhHHHH
Q 041526 82 LEDVVEE 88 (252)
Q Consensus 82 leDIlee 88 (252)
..|++..
T Consensus 317 ~~dil~~ 323 (326)
T PRK10892 317 MHDLLRA 323 (326)
T ss_pred hHHhHhc
Confidence 9999864
No 78
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.62 E-value=1.2e-07 Score=86.62 Aligned_cols=91 Identities=23% Similarity=0.396 Sum_probs=75.7
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcC-----CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCC
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKG-----ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGG 75 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~-----~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~ 75 (252)
+||.+++ .+++|+|..+||+...... .......++.+|..++.++.++++..+++..|...+.|..+|+|+.|.
T Consensus 279 LPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~ 357 (382)
T COG3448 279 LPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGK 357 (382)
T ss_pred ccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCc
Confidence 6999874 6899999999998621110 011234577889889999999999999999999999999999999999
Q ss_pred EEEEEcchhHHHHHHhh
Q 041526 76 TVGVVTLEDVVEEIVGE 92 (252)
Q Consensus 76 ~vGIVTleDIleeIvGe 92 (252)
++||||..|++.++...
T Consensus 358 lvGIvsQtDliaal~r~ 374 (382)
T COG3448 358 LVGIVSQTDLIAALYRN 374 (382)
T ss_pred EEEEeeHHHHHHHHHHH
Confidence 99999999999998654
No 79
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.57 E-value=2.7e-07 Score=91.46 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=73.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC--CCEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY--GGTVG 78 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~--G~~vG 78 (252)
+||+++ .++++|+|+.+|+.+.+.........++.++|.+++.++++++++.++++.|.+++.+..+|+|+. |.++|
T Consensus 481 ~~VvD~-~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liG 559 (574)
T PRK01862 481 LYVVDD-DGRFRGAVALKDITSDLLDKRDTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAG 559 (574)
T ss_pred EEEEcC-CCeEEEEEEHHHHHHHhhcccccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEE
Confidence 478875 368999999999987554332212346888998888999999999999999999999888889876 47999
Q ss_pred EEcchhHHHHHH
Q 041526 79 VVTLEDVVEEIV 90 (252)
Q Consensus 79 IVTleDIleeIv 90 (252)
+||..|+++++.
T Consensus 560 vIt~~DIl~~l~ 571 (574)
T PRK01862 560 VVYKTSLLDAYR 571 (574)
T ss_pred EEEHHHHHHHHH
Confidence 999999999874
No 80
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.54 E-value=2.2e-07 Score=86.56 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=75.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
|||++.. -.++|+|+.||++... ++.++..+|.+.|++|..++++..+-+.|--....|.+|+|++..++|+|
T Consensus 224 fPVvn~~-~kvvGvVt~rDv~~~~------~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGii 296 (432)
T COG4109 224 FPVVNRS-MKVVGVVTMRDVLDKK------PSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGII 296 (432)
T ss_pred cceeccc-ceEEEEEEehhhhcCC------CCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEE
Confidence 7999874 6899999999998532 35679999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHH
Q 041526 81 TLEDVVEEI 89 (252)
Q Consensus 81 TleDIleeI 89 (252)
|..|+++.+
T Consensus 297 tR~dvlk~l 305 (432)
T COG4109 297 TRQDVLKSL 305 (432)
T ss_pred EHHHHHHHH
Confidence 999999997
No 81
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.54 E-value=3.6e-07 Score=87.69 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=67.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||++++ ++++|+|+.+|++..+..+......++.++|.+++.++++++++.+++..|++++ .++|+ +.|.++|+|
T Consensus 369 ~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~--~~vV~-~~g~liGvv 444 (454)
T TIGR01137 369 LPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS--SAIVT-EEGKPIGVV 444 (454)
T ss_pred EEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC--eeEEE-ECCEEEEEE
Confidence 5888753 7899999999998766543211234688899888889999999999999998753 45555 469999999
Q ss_pred cchhHHHHH
Q 041526 81 TLEDVVEEI 89 (252)
Q Consensus 81 TleDIleeI 89 (252)
|..||++.|
T Consensus 445 t~~dll~~l 453 (454)
T TIGR01137 445 TKIDLLSFL 453 (454)
T ss_pred EHHHHHHhh
Confidence 999999876
No 82
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.46 E-value=1.3e-06 Score=66.66 Aligned_cols=83 Identities=27% Similarity=0.394 Sum_probs=68.0
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHH-cCCceEEEecCCC-CEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRI-RKVHMAVVLNEYG-GTVG 78 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~-~~~~~AiVVDE~G-~~vG 78 (252)
+||.+. ..++|+++.+|++.++..+... ..++..+|.+++.++.++.++.++++.|.. .+.+..+|+|+.+ .++|
T Consensus 33 ~~v~~~--~~l~Giit~~di~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvG 109 (117)
T COG0517 33 VPVVDD--GKLVGIITERDILRALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVG 109 (117)
T ss_pred EEEeeC--CEEEEEEEHHHHHHHHhccCCc-cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEE
Confidence 366654 3699999999999887654321 114788887789999999999999999999 6999999999875 9999
Q ss_pred EEcchhHH
Q 041526 79 VVTLEDVV 86 (252)
Q Consensus 79 IVTleDIl 86 (252)
++|..|++
T Consensus 110 ivt~~di~ 117 (117)
T COG0517 110 IITLSDIL 117 (117)
T ss_pred EEEHHHcC
Confidence 99999974
No 83
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.45 E-value=6.7e-07 Score=87.74 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=70.7
Q ss_pred CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526 1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT 76 (252)
Q Consensus 1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~ 76 (252)
+||++++ .++++|+|+.+||.... . ....++.++|++ ++.++++++++.++++.|.+++....+|+|+.|.+
T Consensus 131 vpVVD~~~~~gkLvGIVT~~DLr~~~--~--~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~L 206 (502)
T PRK07107 131 VAVTEDGTAHGKLLGIVTSRDYRISR--M--SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNL 206 (502)
T ss_pred EEEEeCCCcCCEEEEEEEcHHhhccc--c--CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence 5888752 46899999999986421 1 124568999965 67889999999999999999999999999999999
Q ss_pred EEEEcchhHHHH
Q 041526 77 VGVVTLEDVVEE 88 (252)
Q Consensus 77 vGIVTleDIlee 88 (252)
+|+||..|++..
T Consensus 207 vGIIT~~Dilk~ 218 (502)
T PRK07107 207 VYLVFRKDYDSH 218 (502)
T ss_pred EEEEEhHHHHhc
Confidence 999999999984
No 84
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.45 E-value=9e-07 Score=86.90 Aligned_cols=108 Identities=19% Similarity=0.093 Sum_probs=82.1
Q ss_pred CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCC--ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526 1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKP--AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT 76 (252)
Q Consensus 1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~--~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~ 76 (252)
+||++++ .++++|+|+.+|+... .. ...++.++|++. +.++++++++.++++.|++++.+..+|+|+.|.+
T Consensus 134 lpVvD~~~~~GklvGIVT~~DL~~v-~~----~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~L 208 (505)
T PLN02274 134 VCVTETGTMGSKLLGYVTKRDWDFV-ND----RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGEL 208 (505)
T ss_pred EEEEeCCCcCCeEEEEEEHHHHhhc-cc----cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeE
Confidence 5888753 3689999999999643 21 235688999755 6799999999999999999999999999999999
Q ss_pred EEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcCh
Q 041526 77 VGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSI 126 (252)
Q Consensus 77 vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L 126 (252)
+|+||..||+..+. .+.... ......|.+++.+.+..
T Consensus 209 vGvITr~DIlk~~~--~p~~~~-----------~~~d~~~~l~vgaavg~ 245 (505)
T PLN02274 209 VDLVTRTDVKRVKG--YPKLGK-----------PSVGKDGKLLVGAAIGT 245 (505)
T ss_pred EEEEEHHHHHHHhh--CcCccc-----------cccCCCCCEEEEEEEcC
Confidence 99999999998862 111100 01124677888776654
No 85
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.43 E-value=7.3e-07 Score=87.01 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=70.7
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||+++ .++++|+|+.+||... . . ..++.++|.+++.++++++++.++++.|.+++.+..+|+|+.|.++|+|
T Consensus 123 l~VVD~-~gklvGIVT~rDL~~~--~-~---~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGII 195 (479)
T PRK07807 123 VVVVDE-EGRPVGVVTEADCAGV--D-R---FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVL 195 (479)
T ss_pred EEEECC-CCeEEEEEeHHHHhcC--c-c---CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEE
Confidence 478765 4689999999998532 1 1 2458899999999999999999999999999999999999999999999
Q ss_pred cchhHHHHH
Q 041526 81 TLEDVVEEI 89 (252)
Q Consensus 81 TleDIleeI 89 (252)
|..||+...
T Consensus 196 T~~DIl~~~ 204 (479)
T PRK07807 196 TRTGALRAT 204 (479)
T ss_pred EHHHHHHHh
Confidence 999999854
No 86
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.40 E-value=1.1e-06 Score=86.17 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=71.2
Q ss_pred CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCE
Q 041526 1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGT 76 (252)
Q Consensus 1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~ 76 (252)
+||++++ .++++|+|+.+|+... . . ...++.++|++ ++.++++++++.++++.|++++.+..+|+|+.|.+
T Consensus 130 vpVvd~~~~~gkLvGIVt~~DL~~~-~-~---~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~l 204 (495)
T PTZ00314 130 ILITVDGKVGGKLLGIVTSRDIDFV-K-D---KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGEL 204 (495)
T ss_pred EEEEeCCccCCeEEEEEEHHHHhhc-c-c---CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence 5888753 3689999999998732 1 1 13568899965 78999999999999999999999999999999999
Q ss_pred EEEEcchhHHHHH
Q 041526 77 VGVVTLEDVVEEI 89 (252)
Q Consensus 77 vGIVTleDIleeI 89 (252)
+|+||..||+...
T Consensus 205 iGIIT~~DIl~~~ 217 (495)
T PTZ00314 205 VALVSRSDLKKNR 217 (495)
T ss_pred EEEEEehHhhhcc
Confidence 9999999999864
No 87
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.35 E-value=2.7e-06 Score=75.79 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=66.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+||++++ ++++|+|+.+|++..+..+.. ...++.++|.+++.++++++++.++++.|.+.+.+..+|+|+.|.++|+|
T Consensus 190 ~~Vvd~~-g~~~Givt~~dl~~~~~~~~~-~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI 267 (268)
T TIGR00393 190 AIVCDEN-NQLVGVFTDGDLRRALLGGGS-LKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267 (268)
T ss_pred EEEEeCC-CCEEEEEEcHHHHHHHhcCCc-ccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence 4777753 789999999999876543221 23568899988999999999999999999999999999999989999998
Q ss_pred c
Q 041526 81 T 81 (252)
Q Consensus 81 T 81 (252)
+
T Consensus 268 ~ 268 (268)
T TIGR00393 268 H 268 (268)
T ss_pred C
Confidence 5
No 88
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.31 E-value=2.3e-06 Score=83.51 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=69.1
Q ss_pred eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526 2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT 81 (252)
Q Consensus 2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT 81 (252)
||.++ ++++|+|+.+||... . ...++.++|.+++.++++++++.++++.|.+++.+..+|+|+.|.++|+||
T Consensus 123 vVvD~--gklvGIVT~rDL~~~--~----~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT 194 (475)
T TIGR01303 123 VVILE--DRPVGLVTDSDLLGV--D----RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILT 194 (475)
T ss_pred EEEEC--CEEEEEEEHHHhhcC--C----CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEE
Confidence 56664 579999999998532 1 124689999999999999999999999999999999999999999999999
Q ss_pred chhHHHHH
Q 041526 82 LEDVVEEI 89 (252)
Q Consensus 82 leDIleeI 89 (252)
..||+...
T Consensus 195 ~~DLl~~~ 202 (475)
T TIGR01303 195 RTGALRAT 202 (475)
T ss_pred HHHHHHHH
Confidence 99999754
No 89
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.28 E-value=4.1e-06 Score=70.51 Aligned_cols=86 Identities=26% Similarity=0.415 Sum_probs=70.2
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcC-CcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKG-ELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGV 79 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~-~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGI 79 (252)
+||.++ |.++|-|+-.++.+++.++ +......++++|..+.+.|.++.++..+-..+..+ +.++|+ +.|.++||
T Consensus 99 lPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGI 173 (187)
T COG3620 99 LPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGI 173 (187)
T ss_pred CceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEE
Confidence 699987 7999999999999887655 43445678899999999999999998777666543 445556 88999999
Q ss_pred EcchhHHHHHHh
Q 041526 80 VTLEDVVEEIVG 91 (252)
Q Consensus 80 VTleDIleeIvG 91 (252)
||-.||+..+.|
T Consensus 174 ITk~DI~k~~~~ 185 (187)
T COG3620 174 ITKADIMKLLAG 185 (187)
T ss_pred EeHHHHHHHHhc
Confidence 999999988765
No 90
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.16 E-value=6.3e-06 Score=80.83 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=71.5
Q ss_pred EEecCCCCEEEEEEHHHHhHHHHc-CCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526 3 VFEQRIDNIVGIAYAMDLLDYVQK-GELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT 81 (252)
Q Consensus 3 V~~~~~d~IvGiv~~kDll~~~~~-~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT 81 (252)
|.+. .+...|||+.||+..+... +.. ...+++++|+.|++.|..+..+.+++-.|-+++.+..+|. |.|.++||||
T Consensus 185 ~l~~-~~~~~GIvT~~dl~~~v~~~g~~-~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt 261 (610)
T COG2905 185 VLDD-SGPLLGIVTRKDLRSRVIADGRS-KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILT 261 (610)
T ss_pred EEcC-CCCccceeehHHHHHHHHhcCCC-cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEee
Confidence 3443 3678999999999987643 432 3567999999999999999999999999999999999988 6799999999
Q ss_pred chhHHHHH
Q 041526 82 LEDVVEEI 89 (252)
Q Consensus 82 leDIleeI 89 (252)
+.||+...
T Consensus 262 ~~dIl~l~ 269 (610)
T COG2905 262 LTDILRLF 269 (610)
T ss_pred HHHHHHhh
Confidence 99999753
No 91
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=98.13 E-value=2.4e-06 Score=83.79 Aligned_cols=98 Identities=41% Similarity=0.520 Sum_probs=82.7
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEE
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVV 80 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIV 80 (252)
+|||+.+..+++|.+..+.++..+.........++...+.+....+|+++++.+.+..|++.+.||++|.. +....|++
T Consensus 241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~ 319 (498)
T KOG2118|consen 241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVL 319 (498)
T ss_pred eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeE
Confidence 69999888888988888888876643222334567778889999999999999999999999999999986 67899999
Q ss_pred cchhHHHHHHhhhccCCCcH
Q 041526 81 TLEDVVEEIVGEIFDESDSK 100 (252)
Q Consensus 81 TleDIleeIvGei~DE~d~~ 100 (252)
|++|+ +++++++.||.+..
T Consensus 320 ~l~~~-~~~~~ev~de~d~~ 338 (498)
T KOG2118|consen 320 TLEDL-EEVVKEVEDEEDKE 338 (498)
T ss_pred eccch-hhhcceeccccccc
Confidence 99999 88889999988643
No 92
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=98.10 E-value=4e-06 Score=80.35 Aligned_cols=136 Identities=12% Similarity=0.181 Sum_probs=104.5
Q ss_pred eecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCC
Q 041526 44 YFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDAN 123 (252)
Q Consensus 44 ~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~ 123 (252)
...|+++.+..+++.=|.-+.+-...+ +.|+++.++-.+--.+.+ ++++.+..+.. ...+..|.|.++++
T Consensus 433 l~~p~~~~~~~v~Rd~q~i~p~g~t~l-~~gD~l~v~~~~~d~~~l-~~Lf~s~~~~~--------~~a~ffg~f~~e~~ 502 (574)
T COG3263 433 LRMPKWTRIAAVFRDGQLIHPQGSTRL-REGDVLCVIGSERDLRAL-GKLFSSAPPVA--------LDARFFGDFILEPS 502 (574)
T ss_pred ccCCccceeeeEEecCceeccCCCcee-ecCCEEEEEeccccHHHH-HHHHhcCCCcc--------chhhhhcchhhCcc
Confidence 567777777777766665555555555 458888888777666665 56554332111 12457899999999
Q ss_pred cChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEe
Q 041526 124 TSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAG 203 (252)
Q Consensus 124 ~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 203 (252)
....+++-.||.+.-+.+...|+++++..++|..|..||++++ +++.++|.+.
T Consensus 503 ~~~~~~~~~yg~~~~~~d~~~~~~~~i~~~lg~~~v~~Drv~~---------------------------~~l~~~v~~~ 555 (574)
T COG3263 503 AKAADVALAYGLGDGYADKAQTLGELVTQLLGGAPVLGDRVEF---------------------------GGLIWTVAEK 555 (574)
T ss_pred hhhhHHHHHhCCCCChhhhhhcHHHHHHHHhCCCceeeeeEEE---------------------------ccEEEEEeec
Confidence 9999999999987433345789999999999999999999999 6999999999
Q ss_pred cCCeeeEEEEEEc
Q 041526 204 NARKVSAVRFERI 216 (252)
Q Consensus 204 ~~~ri~~V~i~~~ 216 (252)
+++||.++.++..
T Consensus 556 ~d~~it~ig~~~~ 568 (574)
T COG3263 556 EDNRVTKIGVRVE 568 (574)
T ss_pred ccCeeeeeeeecc
Confidence 9999999999744
No 93
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.90 E-value=2.7e-05 Score=75.48 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=70.8
Q ss_pred eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526 2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT 81 (252)
Q Consensus 2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT 81 (252)
.|++. .++++|++..++|+.+- +...+.++|.+.+.+|+..+...++.+.|++.+.-.++|||+.|.++|+||
T Consensus 172 yVvD~-~~~L~Gvvsl~~Ll~a~------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~it 244 (451)
T COG2239 172 YVVDE-KGKLLGVVSLRDLLTAE------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIIT 244 (451)
T ss_pred EEECC-ccceEEEeeHHHHhcCC------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeee
Confidence 45555 35799999999998431 245689999888999999999999999999999999999999999999999
Q ss_pred chhHHHHH
Q 041526 82 LEDVVEEI 89 (252)
Q Consensus 82 leDIleeI 89 (252)
.+|+++.|
T Consensus 245 iDDiidvi 252 (451)
T COG2239 245 IDDIIDVI 252 (451)
T ss_pred HHHHHHHH
Confidence 99999876
No 94
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.88 E-value=3.7e-05 Score=48.51 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=42.4
Q ss_pred ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
+.++++++++.+++..|+..+.+.++|+++.|.+.|++|..+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56789999999999999999999999999889999999999997654
No 95
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.85 E-value=6.5e-05 Score=60.63 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=54.6
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccc-----------cchhhhh---------cCCceecCCCCcHHHHHHHHH
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLES-----------TKVADMA---------HKPAYFVPDSMSVWNLLREFR 60 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~-----------~~l~~~~---------~r~~~~Vpe~~~l~~lL~~mr 60 (252)
+||+++ .++++|+|+.+||+.++........ ..+.+++ .+++.++.+++++.++++.|.
T Consensus 27 ~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~ 105 (133)
T cd04592 27 VLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLME 105 (133)
T ss_pred EEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHH
Confidence 588875 3789999999999987653321100 0123344 367889999999999999999
Q ss_pred HcCCceEEEecCCC
Q 041526 61 IRKVHMAVVLNEYG 74 (252)
Q Consensus 61 ~~~~~~AiVVDE~G 74 (252)
+++.+.++|+|+.+
T Consensus 106 ~~~~~~lPVvd~~~ 119 (133)
T cd04592 106 AKGVKQLPVVKRGV 119 (133)
T ss_pred HcCCCcCCEecCCc
Confidence 99999999998754
No 96
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.83 E-value=3.9e-05 Score=59.72 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=49.8
Q ss_pred cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
.++.++|.+.+.++++++++.++++.|+..+.+..+|+|+.|.++|+||..||..
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 4588888888999999999999999999999888999999899999999999853
No 97
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.78 E-value=0.00016 Score=68.29 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=67.3
Q ss_pred EEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcc
Q 041526 3 VFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTL 82 (252)
Q Consensus 3 V~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTl 82 (252)
|++. .++..|+|..+++..+.... ..+.+.+.....++++++++.+++..|..+..+ .+|+|+.|.++|+||.
T Consensus 278 ~~~~-~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~ 350 (363)
T TIGR01186 278 VVDR-QNKLVGVVDVESIKQARKKA-----QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTR 350 (363)
T ss_pred EEcC-CCCEEEEEeHHHHHHHhhcC-----CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEH
Confidence 4443 36899999999988665432 235566667778999999999999999999988 7788999999999999
Q ss_pred hhHHHHHHh
Q 041526 83 EDVVEEIVG 91 (252)
Q Consensus 83 eDIleeIvG 91 (252)
.+++.++.+
T Consensus 351 ~~~~~~~~~ 359 (363)
T TIGR01186 351 GSLVDALYD 359 (363)
T ss_pred HHHHHHHHh
Confidence 999999864
No 98
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00018 Score=68.82 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=67.3
Q ss_pred eEEecCCCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEc
Q 041526 2 PVFEQRIDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVT 81 (252)
Q Consensus 2 PV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVT 81 (252)
.|+++ .++++|+|+.+++......+ ..+.+.+.....+|++++++.+++..|...... .+|+|+.|.++|+||
T Consensus 312 ~~~~~-~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~ 384 (400)
T PRK10070 312 YVIER-GNKFVGAVSIDSLKTALTQQ-----QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIIS 384 (400)
T ss_pred EEEcC-CCcEEEEEeHHHHHhhhhcC-----CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEE
Confidence 35554 47899999999997654432 235566667778999999999999999997777 777899999999999
Q ss_pred chhHHHHHHh
Q 041526 82 LEDVVEEIVG 91 (252)
Q Consensus 82 leDIleeIvG 91 (252)
..+++..|.+
T Consensus 385 ~~~~~~~~~~ 394 (400)
T PRK10070 385 KGMLLRALDR 394 (400)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 99
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.71 E-value=0.00032 Score=55.17 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=60.7
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEE
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDV 120 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v 120 (252)
+++.+++++.++.++++.|++++....+|+|+.|.++|+||..|++..+...-.+....-.++. ......+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im---------~~~~~~v 72 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKAL---------YKQFKRV 72 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHh---------hccceec
Confidence 5678999999999999999998888899999989999999999999876543322111111211 1233457
Q ss_pred eCCcChHHhHhhc
Q 041526 121 DANTSIDQLSEDL 133 (252)
Q Consensus 121 ~G~~~L~dl~~~l 133 (252)
....++.++.+.+
T Consensus 73 ~~~~~~~~v~~~~ 85 (124)
T cd04608 73 NKNDTLGKLSRIL 85 (124)
T ss_pred CCCCCHHHHHhhc
Confidence 7777777776643
No 100
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.71 E-value=0.00038 Score=52.64 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=43.1
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
.+.+++.++++.++++.|.+.+...++|+|+ |++.|++|.+|++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVL 49 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHH
Confidence 4678899999999999999888888999998 99999999999998764
No 101
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.69 E-value=0.00027 Score=65.09 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=50.5
Q ss_pred cchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 33 TKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 33 ~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
.+++++|.+ ++.++++++++.++++.|.+++...++|+|+.|.++|+||..|+...+
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~ 260 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVF 260 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHH
Confidence 357889976 889999999999999999988888888889999999999999997643
No 102
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.66 E-value=0.0002 Score=68.25 Aligned_cols=93 Identities=18% Similarity=0.328 Sum_probs=72.1
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCcccccc---hhh------hhcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGELLESTK---VAD------MAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~~~~~~---l~~------~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
+||++.. ++.+|+....|+......+.. .... +.. ....+++++..+.++..++..|..++.|.+.|||
T Consensus 263 lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~-~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 263 LPVVDEN-GKKVGNYSRFDVIHLAREGTY-NNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred ceEEcCC-CceecceehhhhhhhhhcCcc-CccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence 6999875 566999999999866544321 1111 111 1123468899999999999999999999999999
Q ss_pred CCCCEEEEEcchhHHHHHHhhhcc
Q 041526 72 EYGGTVGVVTLEDVVEEIVGEIFD 95 (252)
Q Consensus 72 E~G~~vGIVTleDIleeIvGei~D 95 (252)
+.|.++|+||+.|++..++-.-..
T Consensus 341 ~~~~l~GvvSLsDil~~l~~~p~~ 364 (381)
T KOG1764|consen 341 EDGVLVGVISLSDILSYLVLTPSG 364 (381)
T ss_pred CCCcEEEEeeHHHHHHHHHhCccC
Confidence 999999999999999999865543
No 103
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.65 E-value=0.00019 Score=64.75 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=73.2
Q ss_pred cccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh-hccCCCcHHHHhhhccc
Q 041526 31 ESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE-IFDESDSKEEIQKKTGY 109 (252)
Q Consensus 31 ~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe-i~DE~d~~~~~~~~~~~ 109 (252)
+..++.++|.++++++..++++.++.+.|.+++.+.|+|+|. +.++|++|+.||..+++.- +.- .-.++++
T Consensus 170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~---kV~~~M~---- 241 (294)
T COG2524 170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDA---KVSDYMR---- 241 (294)
T ss_pred CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccc---cHHHHhc----
Confidence 346788999999999999999999999999999999999986 5999999999999999743 321 1223332
Q ss_pred EEEecCceEEEeCCcChHHhHhhcC
Q 041526 110 IVMRAEGIYDVDANTSIDQLSEDLN 134 (252)
Q Consensus 110 i~~~~dg~~~v~G~~~L~dl~~~lg 134 (252)
-+-+.+++...|.|.-+.+.
T Consensus 242 -----k~vitI~eDe~i~dAir~M~ 261 (294)
T COG2524 242 -----KNVITINEDEDIYDAIRLMN 261 (294)
T ss_pred -----cCCceEcCchhHHHHHHHHH
Confidence 34578999999999776653
No 104
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.57 E-value=0.0002 Score=70.71 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=66.8
Q ss_pred CEEEEEEHHHHhHHHHcCCcccccchhhhhc-CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526 10 NIVGIAYAMDLLDYVQKGELLESTKVADMAH-KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 10 ~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~-r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
++.++++..|.+.....-. ...++.++|. +++.++++++++.++++.|.+++.+..+|+|+.|.++|+||..|++..
T Consensus 225 ~i~ii~t~~dt~~t~~~l~--~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 225 GVTVISTPYDTFTTARLIN--QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSP 302 (546)
T ss_pred CCeEEEecccHHHHHHHhh--cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcc
Confidence 6889999999886543211 2467999998 789999999999999999999998999999999999999999999985
Q ss_pred H
Q 041526 89 I 89 (252)
Q Consensus 89 I 89 (252)
.
T Consensus 303 ~ 303 (546)
T PRK14869 303 V 303 (546)
T ss_pred c
Confidence 4
No 105
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.54 E-value=0.00021 Score=53.71 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=43.8
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
+++..+.+++++.++++.|.+++...++|+|+.|.++|+||..|++...
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS 49 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC
Confidence 3567899999999999999988888999999999999999999998643
No 106
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.53 E-value=0.0007 Score=52.12 Aligned_cols=49 Identities=27% Similarity=0.460 Sum_probs=45.0
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
|+.++++++++.++++.|..++...++|+|+.|.++|+||..|++..+.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 5688999999999999999888889999998899999999999998765
No 107
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.51 E-value=0.00058 Score=51.96 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=42.5
Q ss_pred CceecCCCCcHHHHHHHHHHcC-CceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRK-VHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~-~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
+..++++++++.++++.|.+++ ...++|+|+.|.++|+||..|++....
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 4678999999999999997665 678889998899999999999988653
No 108
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.50 E-value=0.0003 Score=56.72 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=45.2
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
.+..+++++++.++++.|...+...++|+|+.|.++|+||..|++..+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 35789999999999999998888899999999999999999999998753
No 109
>PRK05326 potassium/proton antiporter; Reviewed
Probab=97.49 E-value=0.00058 Score=67.78 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=79.2
Q ss_pred CCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHH
Q 041526 73 YGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCE 152 (252)
Q Consensus 73 ~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~ 152 (252)
.|+.+-++...+-++.+...+... . .. .......|.|.++|.+++.|+...||++++ ..|++.++.+
T Consensus 463 ~GD~l~l~~~~~~l~~l~~~f~~~-~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 529 (562)
T PRK05326 463 AGDVLLVLGPERDLPALERLFSQS-P-PG-------KLDQRFFGDFILEGDAKLADLALIYGLELD----QQTLGELIKQ 529 (562)
T ss_pred CCCEEEEEECHHHHHHHHHHHhcc-c-cc-------ccccccccccccCcccchhHHHHHhccCcc----cccHHHHHHH
Confidence 477888888787777775544332 1 11 112346899999999999999999999875 6799999999
Q ss_pred HhCCCCCCCcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecCCeeeEEEEE
Q 041526 153 AFGYIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNARKVSAVRFE 214 (252)
Q Consensus 153 ~lg~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ri~~V~i~ 214 (252)
++|+.|..||++.+ +++.++|.+ .+|.+|.++
T Consensus 530 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~---~~~~~~~~~ 561 (562)
T PRK05326 530 RLGGAPVVGDQVEL---------------------------GGIILTVAE---GRVTKVGLR 561 (562)
T ss_pred hcCCCCCCCCEeee---------------------------cceEEEEec---Cceeeeeec
Confidence 99999999999999 579999999 789998774
No 110
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.48 E-value=0.00087 Score=50.43 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=44.0
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
|++..+++++++.++++.|++.+...++|+|+.|.+.|+||..|++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREIL 49 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHH
Confidence 4567899999999999999988888899999889999999999998754
No 111
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.46 E-value=0.00024 Score=53.84 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=42.5
Q ss_pred ceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHH
Q 041526 43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEI 89 (252)
Q Consensus 43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeI 89 (252)
+.++++++++.++++.|++++.+.++|+|+. |.++|+||..|++..+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 5789999999999999999999999999985 8899999999998754
No 112
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.45 E-value=0.0013 Score=50.12 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=44.3
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
++.++.+++++.++++.|++.+...++|+|+.|.++|+||..|++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 4568899999999999999988889999999999999999999998764
No 113
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.45 E-value=0.0012 Score=49.81 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=43.5
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
++.+++.++++.++++.|.+.+...++|+|+.|.++|+||..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~ 49 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYA 49 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhh
Confidence 468899999999999999998888899999989999999999998754
No 114
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.43 E-value=0.0004 Score=51.94 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=42.5
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
++.+++++.++.++++.|++.+.+.++|+|+.|.++|++|..|++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~ 48 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA 48 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence 56789999999999999998888888899988999999999999864
No 115
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.42 E-value=0.00045 Score=52.88 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=43.9
Q ss_pred ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
+.++++++++.+++..|.+.+...++|+|+.|.+.|+||..|++..+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~ 50 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG 50 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh
Confidence 468899999999999999999999999999999999999999987653
No 116
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.00044 Score=53.57 Aligned_cols=49 Identities=22% Similarity=0.374 Sum_probs=44.2
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIv 90 (252)
++..+++++++.++++.|.+.+.+.++|+|+. |+++|+||..|++..+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~ 51 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHH
Confidence 56789999999999999998888899999987 99999999999988663
No 117
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.00049 Score=53.06 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=44.5
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
++.++++++++.++++.|.+++.+..+|+|+.|.++|++|..|++..+.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 5678999999999999999999999999998899999999999997653
No 118
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.38 E-value=0.0011 Score=60.86 Aligned_cols=58 Identities=21% Similarity=0.176 Sum_probs=51.7
Q ss_pred cchhhhhcCC--ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 33 TKVADMAHKP--AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 33 ~~l~~~~~r~--~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
.+++++|.++ +.++++++++.++++.|+..+...++|+|+.|.++|+||..|+...+.
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence 4578899877 899999999999999999888889999999999999999999887553
No 119
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.37 E-value=0.00065 Score=51.78 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=44.5
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHh
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvG 91 (252)
++..++.++++.++++.|++.+.+.++|+|+. |.++|++|..|++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~ 52 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA 52 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh
Confidence 46789999999999999998888889999987 999999999999987644
No 120
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.36 E-value=0.00057 Score=51.82 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=44.3
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
.+.+++.++++.++++.|++.+.+.++|+|+.|.++|+||..|++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 4578999999999999999988889999999899999999999988763
No 121
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.35 E-value=0.0021 Score=47.31 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=45.7
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei 93 (252)
++.+++.+.++.++++.|.+.+.+.++|+|+.|.+.|+++..|++..+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~ 53 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG 53 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc
Confidence 4578899999999999999988888999999899999999999998775543
No 122
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00075 Score=50.70 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=44.2
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
++.++..+.++.++++.|.+.+.+.++|+|+.|.++|++|..|++..+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 50 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVA 50 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHh
Confidence 4678899999999999999888889999999899999999999998764
No 123
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00065 Score=52.88 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=43.7
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
++..++.++++.++++.|.+.+.+.++|+|+.|.+.|+||..|++..+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 456789999999999999999999999999999999999999998765
No 124
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.30 E-value=0.0016 Score=57.95 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=51.6
Q ss_pred cchhhhhcCC-ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 33 TKVADMAHKP-AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 33 ~~l~~~~~r~-~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
.++.++|.++ +..++++.++.++++.|.+.+...++|+|+.|.++|+||..|++..+.
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 3577888777 899999999999999999888889999999999999999999988653
No 125
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.30 E-value=0.00083 Score=50.54 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=44.1
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
+++..++.+.++.++++.|.+++.+.++|+|+.|.++|++|..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 50 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAV 50 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHH
Confidence 5678899999999999999988888888999889999999999998654
No 126
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.29 E-value=0.00053 Score=67.68 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=55.0
Q ss_pred cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526 33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92 (252)
Q Consensus 33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe 92 (252)
.++.++|.+++.++++++++.++++.|++++.+..+|+|+.|.++|+||..|+...+...
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~ 127 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI 127 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhh
Confidence 468899989999999999999999999999999999999999999999999999987653
No 127
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00065 Score=53.01 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=42.8
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
++.+++.++++.++++.|+..+.+.++|+|+.|.++|+||..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGE 48 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhC
Confidence 46789999999999999998888999999988999999999999863
No 128
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.26 E-value=0.001 Score=50.21 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=44.4
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
++..++.+.++.++++.|.+.+...++|+|+.|.++|+||..|++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence 56789999999999999998888888999988999999999999887643
No 129
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.26 E-value=0.0017 Score=62.40 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=52.2
Q ss_pred cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
.++.++|.+++..+++++++.++++.|++++...++|+|+.|.++|+||..|++..+.
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF 392 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 4578888888999999999999999999888888899998899999999999998664
No 130
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.25 E-value=0.0022 Score=47.84 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=43.1
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
++.++..+.++.+++..|++++.+.++|+|+ |.+.|++|..|++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~ 49 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALI 49 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHh
Confidence 4578899999999999999998889999998 99999999999998653
No 131
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.24 E-value=0.003 Score=47.84 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=43.1
Q ss_pred ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
+..++.++++.++++.|...+...++|+|+.|.+.|+||..|++..+.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 51 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL 51 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh
Confidence 467899999999999999888889999998899999999999987654
No 132
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.00077 Score=50.95 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=44.9
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
|++.+++.++++.++++.|.+.+....+|+|+.|.++|+||..|++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE 51 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhh
Confidence 456789999999999999988877778899999999999999999987754
No 133
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.19 E-value=0.0011 Score=50.98 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=44.4
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
+++.+++.+.++.++++.|.+.+...++|+|+.|.+.|+||..|++..+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~ 50 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHA 50 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhh
Confidence 5678999999999999999998888888999889999999999998765
No 134
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.17 E-value=0.001 Score=50.78 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=41.4
Q ss_pred ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
+.+++.++++.++++.|+..+.+.++|+|+.|.++|+||..|+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~ 47 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLE 47 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHh
Confidence 478899999999999999888888999999999999999999976
No 135
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.17 E-value=0.00043 Score=63.67 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=51.6
Q ss_pred chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526 34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
+-.++|.|.+.+++..+++.++.++|++++.....|+||+-+++||||..|+++.
T Consensus 246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH 300 (382)
T ss_pred cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence 3567899999999999999999999999999999999999999999999999873
No 136
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.13 E-value=0.0032 Score=49.39 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=44.5
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
++.++.++.++.++++.|++.+....+|+|+.|.++|+||..|++..+..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence 46789999999999999998888888899998999999999999987643
No 137
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.10 E-value=0.0012 Score=51.95 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=46.1
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhh
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGE 92 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGe 92 (252)
+++..+++++++.++++.|.+++.+.++|+|+.|.++|+||..|++..+...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~ 53 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELG 53 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhccc
Confidence 4678899999999999999999988999999999999999999999866443
No 138
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.10 E-value=0.00061 Score=66.73 Aligned_cols=53 Identities=28% Similarity=0.292 Sum_probs=48.3
Q ss_pred chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHH
Q 041526 34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVV 86 (252)
Q Consensus 34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIl 86 (252)
.+.++|.+++.++++++++.++++.|++++...++|+|+.|.++|+||..|+.
T Consensus 90 Kv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~ 142 (479)
T PRK07807 90 KSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA 142 (479)
T ss_pred ccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh
Confidence 34567889999999999999999999999999999999999999999999974
No 139
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.10 E-value=0.0013 Score=50.23 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=42.0
Q ss_pred CCceecCCCCcHHHHHHHHHHcC-CceEEEecCCCCEEEEEcchhHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRK-VHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~-~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
|++..++.++++.++++.|+..+ .+.++|+|+ |.+.|+|+..|++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~ 49 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELL 49 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHH
Confidence 45678899999999999998876 678889999 9999999999998755
No 140
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.09 E-value=0.0023 Score=63.70 Aligned_cols=58 Identities=24% Similarity=0.399 Sum_probs=52.3
Q ss_pred cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
.+++++|.++...+++++++.++++.|++++....+|+|+.|.++|+||.+|+...+.
T Consensus 447 ~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~ 504 (574)
T PRK01862 447 TQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLL 504 (574)
T ss_pred CcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 4678899888899999999999999999988889999999999999999999987653
No 141
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.09 E-value=0.0013 Score=50.34 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=44.7
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
++.++..++++.++++.|++.+.+.++|+|+.|.++|++|..|++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~ 51 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALS 51 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcc
Confidence 45788999999999999999988899999988999999999999987643
No 142
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.09 E-value=0.0011 Score=51.69 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=43.5
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
.+.+++.++++.++++.|.+++...++|+|+.|.++|+||..|++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~ 49 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL 49 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence 357899999999999999988888899999999999999999998865
No 143
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.09 E-value=0.0016 Score=48.99 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=42.5
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
+++..++.++++.++++.|.+.+...++|+|+ |.++|++|..|++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~ 48 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAI 48 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHH
Confidence 35678999999999999999888888889998 9999999999998764
No 144
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.04 E-value=0.0015 Score=48.55 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
+++.++++++++.++++.|++.+.+.++|+|+ |.++|++|..|++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~Giv~~~~l~~ 46 (105)
T cd04599 1 RDPITIDPLDSVGRAARLMEKHRIGGLPVVED-GKLVGIITSRDVRR 46 (105)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEehHHhhc
Confidence 35678999999999999999888788888884 99999999999975
No 145
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.03 E-value=0.0054 Score=46.14 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=41.4
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
+.+.+++.+.++.++++.|.+++.+.++|+|+ |.+.|++|..|++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~ 46 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVV 46 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHH
Confidence 35678999999999999999988889999998 99999999999874
No 146
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.02 E-value=0.002 Score=48.45 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=43.4
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIv 90 (252)
.+.++++++++.++++.|.+.+....+|+|+. |.++|++|..|++..+.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence 45789999999999999998887788888887 99999999999998764
No 147
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.01 E-value=0.0017 Score=51.82 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=44.0
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
.+.++++++++.++++.|++.+...++|+|+.|.++|+||..|++..+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence 3567899999999999999988888999999999999999999998763
No 148
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.01 E-value=0.002 Score=48.46 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=42.8
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
+++..++.+.++.++++.|++.+...++|+|+ |.++|+||..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~ 49 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKAL 49 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHH
Confidence 56788999999999999999888778889998 9999999999998754
No 149
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.99 E-value=0.0025 Score=47.61 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=43.2
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
.++..++.+.++.++++.|.+.+...++|+|+.|.++|+||..|++...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 3567889999999999999988888888999889999999999998754
No 150
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=96.97 E-value=0.002 Score=48.85 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=42.8
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
++.++.++.++.++++.|.+.+....+|+|+ |.++|+++..|++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~ 49 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASP 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhh
Confidence 5678999999999999999988888889988 99999999999998653
No 151
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.96 E-value=0.0078 Score=45.22 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=42.6
Q ss_pred ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
...++.+.++.++++.|.+.+...++|+|+.|.++|+||..+++..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~ 52 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK 52 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc
Confidence 4568899999999999988777788899988999999999999987643
No 152
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.93 E-value=0.0021 Score=49.44 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=43.3
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIv 90 (252)
++.+++++.++.++++.|.+.+...++|+|+. |.+.|+||..|++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~ 51 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLG 51 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhh
Confidence 45788999999999999998888888899887 99999999999997653
No 153
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.93 E-value=0.0022 Score=49.11 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=42.7
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
.+..++.++++.++++.|.+.+.+.++|+|+.|.++|++|..|++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 56789999999999999998888888899999999999999999875
No 154
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.92 E-value=0.0024 Score=47.86 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=42.3
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
+++.++..++++.++++.|++.+....+|+|+ |.++|++|..|++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~ 48 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVP 48 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHH
Confidence 35678999999999999999888777888888 9999999999998754
No 155
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.91 E-value=0.003 Score=47.66 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=42.6
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
++..++++.++.++++.|.+.+.+..+|+|+.|.+.|++|..|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 49 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD 49 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH
Confidence 456789999999999999988888889999889999999999998654
No 156
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.90 E-value=0.0031 Score=47.51 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=42.0
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
++..++.++++.++++.|.+.+.+.++|+|. |.++|+||..|++..++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~ 49 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVV 49 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHH
Confidence 4678899999999999998888888889987 99999999999986543
No 157
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.89 E-value=0.0025 Score=47.98 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
.++.++..++++.++++.|.+.+.+.++|+|+.|.++|+||..|++.
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~ 48 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG 48 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhc
Confidence 35678999999999999999888778889999999999999999974
No 158
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.85 E-value=0.0036 Score=47.09 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=43.0
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
|++.+++.+.++.++++.|.+.+.+.++|+|+ |.++|+||..|++..+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVV 49 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHh
Confidence 45678999999999999999888888889998 99999999999987543
No 159
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.85 E-value=0.0034 Score=47.60 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=40.2
Q ss_pred CceecCCCCcHHHHHHHHHHcC-CceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRK-VHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~-~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
++..++.++++.++++.|..++ ....+|+| .|+++|+||..|++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTA 50 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHh
Confidence 5678899999999999998877 55666666 599999999999997654
No 160
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.83 E-value=0.0045 Score=46.47 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=40.0
Q ss_pred eecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526 44 YFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 44 ~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
.++++++++.++++.|.+.+...++|+|+ |.+.|+||..|++..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence 57899999999999999888888999998 999999999998763
No 161
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.82 E-value=0.0036 Score=46.89 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=42.3
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
++..++.++++.++++.|++.+.+.++|+|+ |.++|++|..|++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLA 49 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHh
Confidence 4567899999999999999888888999987 99999999999987653
No 162
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.81 E-value=0.0038 Score=46.97 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=42.6
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
....+..+.++.++++.|.+.+...++|+|+.|.++|+||..|++..+.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA 50 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH
Confidence 3567899999999999998887778889998899999999999987654
No 163
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.80 E-value=0.0038 Score=47.89 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=43.2
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
++..++.+.++.++++.|++.+....+|+|+ |+++|+||..|++..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~ 50 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISP 50 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHH
Confidence 4578899999999999999888888889997 999999999999887653
No 164
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.79 E-value=0.003 Score=50.69 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=43.8
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
++..++.++++.++++.|++.+...++|+|+ |.++|++|..|++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~ 50 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVT 50 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHh
Confidence 5678999999999999999988888999998 999999999999887643
No 165
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.77 E-value=0.0044 Score=46.67 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=43.3
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
|++..+++++++.++++.|++.+.+.++|+|+ +.+.|++|..|++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~ 49 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVV 49 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHh
Confidence 45678999999999999999988889999986 59999999999998764
No 166
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.75 E-value=0.0038 Score=47.57 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=42.4
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
++..+++++++.+++..|.+.+....+|+|+.|.++|+||..|++...
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 567899999999999999888877888999889999999999987643
No 167
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.75 E-value=0.0041 Score=47.53 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=42.5
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
++..++.+.++.++++.|.+++....+|+|+ |.++|++|..|++..+.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~ 49 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALR 49 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhh
Confidence 4678899999999999999888888889987 99999999999987654
No 168
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.68 E-value=0.0041 Score=47.40 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=40.7
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVVE 87 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIle 87 (252)
++.+++.++++.++++.|++.+...++|+|+ .|.++|+||..|++.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 4578999999999999998888788899997 789999999999864
No 169
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.66 E-value=0.0038 Score=46.63 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=41.5
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
+++..++.+.++.++++.|.+.+...++|+|+.|.+.|++|..|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~ 48 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF 48 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee
Confidence 46678999999999999998888778889998899999999999863
No 170
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.65 E-value=0.0041 Score=60.89 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=49.0
Q ss_pred chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
.+.++|.+++.++++++++.++++.|++++...++|+|+.|.++|+||..|+..
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~ 141 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF 141 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence 355677789999999999999999999999999999999999999999999863
No 171
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.63 E-value=0.0023 Score=60.21 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=85.1
Q ss_pred cchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccE
Q 041526 33 TKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYI 110 (252)
Q Consensus 33 ~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i 110 (252)
..+.++|. ....|+.++.++.+.++.-.+.+....+|+|++-.++|+||+.|++..- ++ ..-+.++
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~----~~--t~ieKVM------ 255 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK----PS--TTIEKVM------ 255 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC----CC--ccHHHHh------
Confidence 45778885 4567999999999999999998888888999999999999999987641 11 1122222
Q ss_pred EEecCceEEEeCCcChHHhHhhcCC---C-CCCCCccCCHHHHH--------HHHhCCCCCCCcEEE
Q 041526 111 VMRAEGIYDVDANTSIDQLSEDLNI---K-MPEGHQYETVSGFV--------CEAFGYIPRTGESIK 165 (252)
Q Consensus 111 ~~~~dg~~~v~G~~~L~dl~~~lgi---~-l~~~~~~~TLaGli--------l~~lg~iP~~Gd~i~ 165 (252)
.-+-+.+.+++++..++....+ + +|--+...||.|.+ +...++-|++|+.+.
T Consensus 256 ---tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpqvget~~ 319 (432)
T COG4109 256 ---TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQVGETIS 319 (432)
T ss_pred ---ccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCcccccHH
Confidence 1244789999999998876644 3 45323355666654 345578899998875
No 172
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=96.55 E-value=0.0088 Score=50.68 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=59.1
Q ss_pred HHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526 17 AMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93 (252)
Q Consensus 17 ~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei 93 (252)
.|.++.++.+-.. .......+|++|+++|.++.++.+++..|+.++..-.+|+++ |.++|-||-.||...+....
T Consensus 50 ~k~Il~aL~e~e~-~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 50 VKRILEALEEAEK-TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM 124 (187)
T ss_pred HHHHHHHHHHhhc-ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc
Confidence 4455555543221 123467889999999999999999999999999888889977 99999999999998875433
No 173
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.43 E-value=0.0075 Score=44.89 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=40.3
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
+++.+++.+.++.+++..|++.+....+|+|+ |.++|+++..|++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~ 47 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG 47 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 46788999999999999998877767778887 99999999999874
No 174
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.41 E-value=0.0045 Score=61.24 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=56.4
Q ss_pred cchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccC
Q 041526 33 TKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDE 96 (252)
Q Consensus 33 ~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE 96 (252)
+.+.+++..|++.|++.+++.++-++|...+....+|+|..|...||||-.|+...++.+-.+.
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~ 212 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK 212 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc
Confidence 4567778899999999999999999999999998888889999999999999999998655443
No 175
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.39 E-value=0.01 Score=44.69 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=39.1
Q ss_pred ceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHH
Q 041526 43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIV 90 (252)
Q Consensus 43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIv 90 (252)
+..++.++++.++++.|.+.+....+|.++ |.++|+||..|++..+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~ 49 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVMER-GELVGLLTFREVLQAMA 49 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHHHHHHH
Confidence 467899999999999998777666665654 99999999999988764
No 176
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.29 E-value=0.0084 Score=45.17 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=35.6
Q ss_pred cCCCCcHHHHHHHHHHcC-----CceEEEecCCCCEEEEEcchhHHH
Q 041526 46 VPDSMSVWNLLREFRIRK-----VHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 46 Vpe~~~l~~lL~~mr~~~-----~~~AiVVDE~G~~vGIVTleDIle 87 (252)
++.++++.++++.|++.+ ...++|+|+.|.++|+||..|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~ 48 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL 48 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc
Confidence 577889999999998766 256778988899999999998875
No 177
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.26 E-value=0.0098 Score=57.76 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=48.0
Q ss_pred hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC---CCEEEEEcchhHHHH
Q 041526 35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY---GGTVGVVTLEDVVEE 88 (252)
Q Consensus 35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~---G~~vGIVTleDIlee 88 (252)
+.+.+.+++.++++++++.++++.|++++....+|+|+. |.++|+||..|++..
T Consensus 82 ~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~ 138 (450)
T TIGR01302 82 AENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV 138 (450)
T ss_pred ccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence 445667889999999999999999999999999999987 799999999999753
No 178
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.17 E-value=0.0066 Score=59.73 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=45.5
Q ss_pred hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCC---CCEEEEEcchhHH
Q 041526 35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY---GGTVGVVTLEDVV 86 (252)
Q Consensus 35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~---G~~vGIVTleDIl 86 (252)
..+.+.+++.++++++++.++++.|++.+...++|+|+. |.++|+||..|+.
T Consensus 98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID 152 (495)
T ss_pred cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence 344566788999999999999999999998999999873 7899999999985
No 179
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.13 E-value=0.0086 Score=58.70 Aligned_cols=51 Identities=24% Similarity=0.237 Sum_probs=45.3
Q ss_pred hhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHH
Q 041526 35 VADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVV 86 (252)
Q Consensus 35 l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIl 86 (252)
..++|.+++.++++++++.++++.|++.+...++|+|+ |.++|+||..|+.
T Consensus 90 v~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~ 140 (475)
T TIGR01303 90 SRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLL 140 (475)
T ss_pred hhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhh
Confidence 44667789999999999999999999998888888885 7999999999974
No 180
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.019 Score=55.02 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=67.9
Q ss_pred CeEEecC--CCCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEE
Q 041526 1 VPVFEQR--IDNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVG 78 (252)
Q Consensus 1 lPV~~~~--~d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vG 78 (252)
+||.++. ..+++|+|+.+|+-. +.+. ...+.++|...+++.|...++.++=+.+++.+..-.+|||+.|.++-
T Consensus 142 ~pvTe~g~~~~KLvG~vtsrdi~f-~~~~----~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva 216 (503)
T KOG2550|consen 142 IPVTEDGKRGSKLVGIITSRDIQF-LEDN----SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVA 216 (503)
T ss_pred cccccCCcccceeEEEEehhhhhh-hhcc----cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceee
Confidence 4666532 368999999999853 4322 35678888877799999999999999999999888888999999999
Q ss_pred EEcchhHHHH
Q 041526 79 VVTLEDVVEE 88 (252)
Q Consensus 79 IVTleDIlee 88 (252)
+|+..|+...
T Consensus 217 ~~~rtDl~k~ 226 (503)
T KOG2550|consen 217 MLSRTDLMKN 226 (503)
T ss_pred eeehhhhhhh
Confidence 9999999764
No 181
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=95.93 E-value=0.022 Score=55.24 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=47.9
Q ss_pred ccchhhhhcCCceecCCCCcHHHHHHHHHH-----cCCceEEEecCCCCEEEEEcchhHHH
Q 041526 32 STKVADMAHKPAYFVPDSMSVWNLLREFRI-----RKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~-----~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
..+++++|.+...++++++++.++++.|++ .....++|+|+.|.++|+||..|++.
T Consensus 130 e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~ 190 (449)
T TIGR00400 130 DDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL 190 (449)
T ss_pred cchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc
Confidence 456889998888999999999999999986 33456778899999999999999863
No 182
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.87 E-value=0.022 Score=54.32 Aligned_cols=73 Identities=11% Similarity=0.148 Sum_probs=55.1
Q ss_pred EEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 13 GIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 13 Giv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
|++...+...+..... ..++.+ +.+....+++++++.+++..+.....++++ +|+ |.++|+||..+++.+|.+
T Consensus 309 ~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 309 QVRRRDAKLPVQAWAA---EQEVES-LEAAPTVINPDTLMRDVLAARHRTGGAILL-VEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred ceecccchHhHhhccc---ccchhh-hcccCcccCCCCcHHHHHHHHhcCCCCeEE-eeC-CeEEEEEeHHHHHHHHhc
Confidence 7777766654333111 123555 446788999999999999999888887775 566 999999999999999865
No 183
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=95.86 E-value=0.022 Score=52.35 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=77.0
Q ss_pred ccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCc-HHHHhhhc
Q 041526 32 STKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDS-KEEIQKKT 107 (252)
Q Consensus 32 ~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~-~~~~~~~~ 107 (252)
..+++++|+. .+.+++.++++.++++.|++++....+|+++. +.++|+|+..|++..+.. ..... -..+
T Consensus 66 ~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~~l~~l---- 138 (292)
T PRK15094 66 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAFSMDKV---- 138 (292)
T ss_pred CCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcCCHHHH----
Confidence 3467888843 38999999999999999999998888899875 789999999999865421 11110 1111
Q ss_pred ccEEEecCceEEEeCCcChHHhHhhcC---CC----CCCCC---ccCCHHHHHHHHhCCCCCCCc
Q 041526 108 GYIVMRAEGIYDVDANTSIDQLSEDLN---IK----MPEGH---QYETVSGFVCEAFGYIPRTGE 162 (252)
Q Consensus 108 ~~i~~~~dg~~~v~G~~~L~dl~~~lg---i~----l~~~~---~~~TLaGlil~~lg~iP~~Gd 162 (252)
.+ -.+.+...+++.++.+.|- .. +.+.+ ...|+..++-+.+|.+....|
T Consensus 139 ---~r---~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d 197 (292)
T PRK15094 139 ---LR---QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYD 197 (292)
T ss_pred ---cC---CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccc
Confidence 11 1235777778777665442 21 11111 235777777777777664433
No 184
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.81 E-value=0.031 Score=55.22 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=41.0
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVV 86 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIl 86 (252)
.+.++++++++.++++.|.+++...++|+|+ .|.++||||..|+.
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr 153 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR 153 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh
Confidence 3469999999999999999999999999986 68999999999985
No 185
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=95.66 E-value=0.097 Score=49.96 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=70.7
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHHcCCc-c-----cccchhhh---hcCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQKGEL-L-----ESTKVADM---AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~~~~~-~-----~~~~l~~~---~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
+||.+....+++.+++.+-++.++..... + ...++.++ ....+.++.+++++.++++.|..++..-.+|||
T Consensus 188 vpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~ 267 (381)
T KOG1764|consen 188 VPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVD 267 (381)
T ss_pred eeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEc
Confidence 57887555699999999999987643211 1 11122221 113478899999999999999999999999999
Q ss_pred CCCCEEEEEcchhHHHHHHhh
Q 041526 72 EYGGTVGVVTLEDVVEEIVGE 92 (252)
Q Consensus 72 E~G~~vGIVTleDIleeIvGe 92 (252)
++|..+|..+.-|+...+...
T Consensus 268 ~~g~~v~~~s~~Dv~~l~~~~ 288 (381)
T KOG1764|consen 268 ENGKKVGNYSRFDVIHLAREG 288 (381)
T ss_pred CCCceecceehhhhhhhhhcC
Confidence 999999999999999887643
No 186
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.60 E-value=0.037 Score=41.23 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=39.6
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHH
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVE 87 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIle 87 (252)
++.++..+.++.+++..|++.+...++|+|+.|.+.|++|..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~ 47 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR 47 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHh
Confidence 3467788889999999999887778888988899999999999874
No 187
>COG0517 FOG: CBS domain [General function prediction only]
Probab=95.37 E-value=0.049 Score=40.97 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=45.6
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhh
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEI 93 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei 93 (252)
+.+.++.+..++.+++..|.+++...++|++. +.++|++|..|++..+....
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~ 58 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG 58 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC
Confidence 67789999999999999999999999988863 47999999999999885443
No 188
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=95.31 E-value=0.038 Score=41.84 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=40.5
Q ss_pred ceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHHHHH
Q 041526 43 AYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 43 ~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIleeI 89 (252)
..+++++.++.++...|.+.+....+|+|+ .|.++|+||..|+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~ 53 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL 53 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH
Confidence 467899999999999998887667778888 58999999999998765
No 189
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.24 E-value=0.033 Score=55.05 Aligned_cols=49 Identities=16% Similarity=-0.044 Sum_probs=44.4
Q ss_pred hcCCceecCCCCcHHHHHHHHHHcCCceEEEecC---CCCEEEEEcchhHHH
Q 041526 39 AHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE---YGGTVGVVTLEDVVE 87 (252)
Q Consensus 39 ~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE---~G~~vGIVTleDIle 87 (252)
|.+++.++++++++.++++.|.+++...++|+|+ .|.++|+||..|+..
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~ 157 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDF 157 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhh
Confidence 5588999999999999999999999999999987 489999999999864
No 190
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.55 E-value=0.053 Score=54.50 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=48.6
Q ss_pred chhhhhcCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526 34 KVADMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 34 ~l~~~~~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
++..+|...|++||++|++..++..||+-..+..+||+.-.+++||+|..|+..+
T Consensus 691 Dl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 691 DLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred ccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 4566788889999999999999999999998888888877889999999999843
No 191
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.50 E-value=0.098 Score=49.15 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=46.2
Q ss_pred cCCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHh
Q 041526 40 HKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVG 91 (252)
Q Consensus 40 ~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvG 91 (252)
..++..++.++++.+++...++...++++ +||.|.++|+++...++++|.+
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~~p~aV-vde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAPCPVAV-VDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccCccchHHHHHHHHhcCCCceeE-EcCCCcEEEEecHHHHHHHHhc
Confidence 36778999999999999999999999885 7899999999999999999865
No 192
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=93.83 E-value=0.14 Score=49.08 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=78.4
Q ss_pred ccchhhhhcC--CceecCCCCcHHHHHHHHHHcCCceEEEecCC-CCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcc
Q 041526 32 STKVADMAHK--PAYFVPDSMSVWNLLREFRIRKVHMAVVLNEY-GGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTG 108 (252)
Q Consensus 32 ~~~l~~~~~r--~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~-G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~ 108 (252)
..+++++|+. .+.+++.++++.++++.|++++....+|+++. +.++|+|+..|++..+-+ +..+ -.+
T Consensus 190 ~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~-l~~------ 259 (408)
T TIGR03520 190 NTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK---KNFD-WQS------ 259 (408)
T ss_pred CCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc---CCCC-HHH------
Confidence 3467788853 57999999999999999999999999999764 589999999999865421 1111 111
Q ss_pred cEEEecCceEEEeCCcChHHhHhhcC---CC----CCCCC---ccCCHHHHHHHHhCCCCCC
Q 041526 109 YIVMRAEGIYDVDANTSIDQLSEDLN---IK----MPEGH---QYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 109 ~i~~~~dg~~~v~G~~~L~dl~~~lg---i~----l~~~~---~~~TLaGlil~~lg~iP~~ 160 (252)
+.+ --+.+.-++++.++.+.+- .. +.+.+ +--|+..++-+.+|.+...
T Consensus 260 -~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 260 -LLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred -HcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCc
Confidence 111 2356888888888766552 11 12211 2357888877777776543
No 193
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.78 E-value=0.26 Score=49.62 Aligned_cols=87 Identities=16% Similarity=0.281 Sum_probs=66.0
Q ss_pred CeEE-ecCCCCEEEEEEHHHHhHHHHcCCc-----------------------ccccchhhhhcCCceecCCCCcHHHHH
Q 041526 1 VPVF-EQRIDNIVGIAYAMDLLDYVQKGEL-----------------------LESTKVADMAHKPAYFVPDSMSVWNLL 56 (252)
Q Consensus 1 lPV~-~~~~d~IvGiv~~kDll~~~~~~~~-----------------------~~~~~l~~~~~r~~~~Vpe~~~l~~lL 56 (252)
|||+ +++....+|+|..|+++..+..-+. .....++++|.-.|.+|...++...++
T Consensus 583 fpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~ 662 (696)
T KOG0475|consen 583 FPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVV 662 (696)
T ss_pred ceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHH
Confidence 5666 3456789999999998865431100 012246677777789999999999999
Q ss_pred HHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526 57 REFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 57 ~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
+.|++-...-.+ |+++|.+.|+||-.|++..
T Consensus 663 ~~F~~lg~~~~~-v~~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 663 DLFRKLGLRQIL-VTKNGILLGIITKKDCLRH 693 (696)
T ss_pred HHHHhhCceEEE-EccCCeeEeeeehHHHHHh
Confidence 999987776665 5588999999999999864
No 194
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=91.85 E-value=0.36 Score=47.19 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=48.6
Q ss_pred ccchhhhhcCCceecCCCCcHHHHHHHHHH-----cCCceEEEecCCCCEEEEEcchhHH
Q 041526 32 STKVADMAHKPAYFVPDSMSVWNLLREFRI-----RKVHMAVVLNEYGGTVGVVTLEDVV 86 (252)
Q Consensus 32 ~~~l~~~~~r~~~~Vpe~~~l~~lL~~mr~-----~~~~~AiVVDE~G~~vGIVTleDIl 86 (252)
..+...+|....+.+++++++.+++..+|+ ...+...|+|+++.+.|+|++.+++
T Consensus 131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll 190 (451)
T COG2239 131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190 (451)
T ss_pred hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh
Confidence 345778899999999999999999999995 3457788999999999999999998
No 195
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=91.79 E-value=0.21 Score=33.34 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=20.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHHH
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYVQ 25 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~~ 25 (252)
+||++++ ++++|+|+.+||+.++.
T Consensus 33 ~~V~d~~-~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 33 LPVVDED-GKLVGIISRSDLLKALL 56 (57)
T ss_dssp EEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred EEEEecC-CEEEEEEEHHHHHhhhh
Confidence 5899764 89999999999998753
No 196
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=84.94 E-value=2.3 Score=40.92 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 47 PDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 47 pe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
..+.+...++..|+..+...++|+|+.|.+.|+||.+++....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 333 (400)
T PRK10070 291 TPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTAL 333 (400)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhh
Confidence 3566889999999999999999999999999999999997664
No 197
>PRK11573 hypothetical protein; Provisional
Probab=80.95 E-value=5.9 Score=38.16 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=77.5
Q ss_pred ccchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEecC-CCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcc
Q 041526 32 STKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNE-YGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTG 108 (252)
Q Consensus 32 ~~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE-~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~ 108 (252)
..+++++|. ..+.+++.+.++.++++.+++++....+|+++ -..++|+|...|++..+... .+.+ .....
T Consensus 186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~--~~~~-~~~l~---- 258 (413)
T PRK11573 186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK--KEFT-KENML---- 258 (413)
T ss_pred CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc--CcCC-HHHHH----
Confidence 456777873 45789999999999999999999888888754 36899999999999754211 1111 11110
Q ss_pred cEEEecCceEEEeCCcChHHhHhhcC---CC----CCCCC---ccCCHHHHHHHHhCCCCCC
Q 041526 109 YIVMRAEGIYDVDANTSIDQLSEDLN---IK----MPEGH---QYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 109 ~i~~~~dg~~~v~G~~~L~dl~~~lg---i~----l~~~~---~~~TLaGlil~~lg~iP~~ 160 (252)
+...--+.|.-++++.++-+.+- .. +.+.+ .-.|+...+-+.+|.++..
T Consensus 259 ---~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 259 ---RAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred ---hhccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcc
Confidence 00112356888888888755442 11 22211 2358888888888888744
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=79.66 E-value=2.6 Score=25.47 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=18.2
Q ss_pred CeEEecCCCCEEEEEEHHHHhHHH
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLDYV 24 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~~~ 24 (252)
+||++++ ++++|+++.++++..+
T Consensus 26 ~~v~~~~-~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 26 LPVVDEE-GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ccEECCC-CeEEEEEEHHHHHHhh
Confidence 5788764 7899999999987643
No 199
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=78.36 E-value=3.4 Score=38.01 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=35.6
Q ss_pred cCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHH
Q 041526 46 VPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 46 Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
++....-.+++..|-..+...+.|+|+.|.++|.||..+++..
T Consensus 266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 266 LLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 4455556668888888888889999999999999999998754
No 200
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=71.91 E-value=9.4 Score=36.81 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=81.5
Q ss_pred ccchhhhhc--CCceecCCCCcHHHHHHHHHHcCCceEEEec-CCCCEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcc
Q 041526 32 STKVADMAH--KPAYFVPDSMSVWNLLREFRIRKVHMAVVLN-EYGGTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTG 108 (252)
Q Consensus 32 ~~~l~~~~~--r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD-E~G~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~ 108 (252)
..+++++|. ..+.+++.+.++.++.+.+++++....+|++ .-..++|+|...|++..+...-. ......
T Consensus 205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~~~~~------- 276 (429)
T COG1253 205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DLDLRV------- 276 (429)
T ss_pred CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-ccchhh-------
Confidence 345667773 4578999999999999999998888888888 55689999999999998753311 010000
Q ss_pred cEEEecCceEEEeCCcChHHhHhhcCC---C----CCCC---CccCCHHHHHHHHhCCCCCCCcE
Q 041526 109 YIVMRAEGIYDVDANTSIDQLSEDLNI---K----MPEG---HQYETVSGFVCEAFGYIPRTGES 163 (252)
Q Consensus 109 ~i~~~~dg~~~v~G~~~L~dl~~~lgi---~----l~~~---~~~~TLaGlil~~lg~iP~~Gd~ 163 (252)
.+. --+.|.-++++.++-+.+-- . +.+. ..--|+...+-+..|.++...|.
T Consensus 277 ~~~----~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~ 337 (429)
T COG1253 277 LVR----PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDE 337 (429)
T ss_pred ccc----CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccc
Confidence 011 33668888888887654421 1 1111 12368888888888988877664
No 201
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=66.27 E-value=17 Score=34.40 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=39.2
Q ss_pred eecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHH
Q 041526 44 YFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEI 89 (252)
Q Consensus 44 ~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeI 89 (252)
.....+.+...++..|+..+...++|+|+.+.+.|.|+.+++...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 298 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQAR 298 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHh
Confidence 3455566889999999999999999999999999999999887654
No 202
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=53.67 E-value=7.1 Score=32.00 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHhCCC---CCCCcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecC
Q 041526 143 YETVSGFVCEAFGYI---PRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNA 205 (252)
Q Consensus 143 ~~TLaGlil~~lg~i---P~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 205 (252)
-.-+|||+.+...++ |..|=++.++ ++-+.+++++.|+...+...++++|.
T Consensus 47 RNrIAGYIThlmkri~~gpvrgis~klq------------eeererr~~yvPe~s~~~~~~i~vd~ 100 (134)
T PTZ00154 47 RNKIAGFVTHLMKRIQKGPVRGISLKLQ------------EEERERRMDYVPEKSEVDIDNITVDQ 100 (134)
T ss_pred hhHHHHHHHHHHhhhccCCccccceehh------------HHHHHHhhccCCcchhcccceeEECH
Confidence 357999999988776 8889899884 34467888888887777766666654
No 203
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=47.10 E-value=23 Score=24.63 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
...+.+++.+++.++|..+.....++|+.+|
T Consensus 6 g~~~~~~~~~tv~~ll~~l~~~~~~i~V~vN 36 (65)
T cd00565 6 GEPREVEEGATLAELLEELGLDPRGVAVALN 36 (65)
T ss_pred CeEEEcCCCCCHHHHHHHcCCCCCcEEEEEC
Confidence 4457788899999999999877788888876
No 204
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=46.54 E-value=4.7 Score=30.19 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=36.9
Q ss_pred CceEEEeCCcChHHhHhhcCCCCCCCCccCCHHHHHHHHhCCCCCCCcEEEE
Q 041526 115 EGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGESIKV 166 (252)
Q Consensus 115 dg~~~v~G~~~L~dl~~~lgi~l~~~~~~~TLaGlil~~lg~iP~~Gd~i~~ 166 (252)
.-.+.+++.+++.++-+.||++.++- +...++|--. -+.++|+.||++.+
T Consensus 24 ~~~~~~~~~~tvkd~IEsLGVP~tEV-~~i~vNG~~v-~~~~~~~~Gd~v~V 73 (81)
T PF14451_consen 24 PFTHPFDGGATVKDVIESLGVPHTEV-GLILVNGRPV-DFDYRLKDGDRVAV 73 (81)
T ss_pred ceEEecCCCCcHHHHHHHcCCChHHe-EEEEECCEEC-CCcccCCCCCEEEE
Confidence 34567899999999999999987653 2344444322 34789999999998
No 205
>KOG0187 consensus 40S ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=45.93 E-value=8 Score=31.40 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHhCCC---CCCCcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEecC
Q 041526 143 YETVSGFVCEAFGYI---PRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGNA 205 (252)
Q Consensus 143 ~~TLaGlil~~lg~i---P~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 205 (252)
..-+|||+.+..++| |..|=+|.++ ++.+.+++++.++...+...++++|.
T Consensus 47 rNkIAGyvtHLmkrIqkGpvRGISiKLQ------------EEERErrdnyVPevSaLd~d~ieVD~ 100 (134)
T KOG0187|consen 47 RNKIAGYVTHLMKRIQKGPVRGISIKLQ------------EEERERRDNYVPEVSALDQDIIEVDP 100 (134)
T ss_pred hhHHHHHHHHHHHHHHcCCccceeEeec------------HHHHHhhcccCcchhhcchhheeeCh
Confidence 467999998887655 8899999984 34567888888888888888877764
No 206
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=42.31 E-value=32 Score=24.16 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
.....+++.+++.++|..+......+|+.+|
T Consensus 7 g~~~~~~~~~tl~~ll~~l~~~~~~vaVavN 37 (66)
T PRK08053 7 DQPMQCAAGQTVHELLEQLNQLQPGAALAIN 37 (66)
T ss_pred CeEEEcCCCCCHHHHHHHcCCCCCcEEEEEC
Confidence 3456778889999999998877778888886
No 207
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=41.83 E-value=34 Score=23.71 Aligned_cols=30 Identities=30% Similarity=0.246 Sum_probs=25.2
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
.+..+++.+++.++|..+.-...+.|+.+|
T Consensus 8 ~~~~~~~~~tl~~lL~~l~~~~~~vav~vN 37 (66)
T PRK05659 8 EPRELPDGESVAALLAREGLAGRRVAVEVN 37 (66)
T ss_pred eEEEcCCCCCHHHHHHhcCCCCCeEEEEEC
Confidence 456788899999999999887888888876
No 208
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=40.33 E-value=36 Score=25.07 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=18.8
Q ss_pred CceEEEecCCCCEEEEEcchhHHHH
Q 041526 64 VHMAVVLNEYGGTVGVVTLEDVVEE 88 (252)
Q Consensus 64 ~~~AiVVDE~G~~vGIVTleDIlee 88 (252)
.....|||+.|...|+++..+.+..
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 4567788999999999999998764
No 209
>PRK07440 hypothetical protein; Provisional
Probab=37.86 E-value=39 Score=24.24 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=26.1
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
..+..+++.+++.++|.++.-....+|+.+|
T Consensus 11 G~~~~~~~~~tl~~lL~~l~~~~~~vav~~N 41 (70)
T PRK07440 11 GETRTCSSGTSLPDLLQQLGFNPRLVAVEYN 41 (70)
T ss_pred CEEEEcCCCCCHHHHHHHcCCCCCeEEEEEC
Confidence 3456788899999999999888888998886
No 210
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=35.42 E-value=40 Score=28.37 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=47.0
Q ss_pred CCEEEEEEHHHHhHHHHcCCcccccchhhhhcCCceecCCCCcHHH-HHHHHHHcCCceEEEecCCCCEEEEEcchhH--
Q 041526 9 DNIVGIAYAMDLLDYVQKGELLESTKVADMAHKPAYFVPDSMSVWN-LLREFRIRKVHMAVVLNEYGGTVGVVTLEDV-- 85 (252)
Q Consensus 9 d~IvGiv~~kDll~~~~~~~~~~~~~l~~~~~r~~~~Vpe~~~l~~-lL~~mr~~~~~~AiVVDE~G~~vGIVTleDI-- 85 (252)
.-+-|+...+|....+..... .+ ..++.+|=..++.+ ..+.+ +....+++. ++.|.++|+++.+|+
T Consensus 51 sPL~GFM~~~dy~~V~~~~rL-~~--------G~~wpiPI~L~v~~e~~~~l-~~G~~v~L~-~~~G~~~a~l~V~evy~ 119 (160)
T PF14306_consen 51 SPLTGFMNEEDYESVLETMRL-PD--------GTLWPIPIVLDVSEEEAKSL-KEGDKVALR-DPEGKPVAILEVEEVYE 119 (160)
T ss_dssp TT-SEE--HHHHHHHHHHSBE-TT--------SSB--S---EEECHHHHTTC-TTTSEEEEE-ETTTEEEEEEEEEEEEE
T ss_pred CCCccccCHHHHHHHHhhCCc-CC--------CCEEeEEEEEECCHHHHHhc-cCCCEEEEE-CCCCCEEEEEEeCeeec
Confidence 345688888887765543321 11 11222333322222 22222 345667764 456999999999998
Q ss_pred ------HHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCcCh
Q 041526 86 ------VEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANTSI 126 (252)
Q Consensus 86 ------leeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~~L 126 (252)
.+.++|...-.|..-.. + ...|.|.|.|.+.+
T Consensus 120 ~dk~~ea~~vfgT~d~~HPgV~~-------~--~~~g~~~vgG~i~~ 157 (160)
T PF14306_consen 120 PDKEEEAEKVFGTTDPAHPGVAK-------L--YERGDYYVGGKIEV 157 (160)
T ss_dssp ECHHHHHHHHHSS-TTTSHHHHH-------H--HTS-SEEEEEEEEE
T ss_pred CCHHHHHHHhhCCCCCCChHHHH-------H--HhcCCEEEeeEEEE
Confidence 33444433323321111 1 15688999998753
No 211
>PRK00568 carbon storage regulator; Provisional
Probab=34.65 E-value=67 Score=23.88 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=15.4
Q ss_pred ceEEEEEEEecCCeeeEEEEE
Q 041526 194 QIYKLEILAGNARKVSAVRFE 214 (252)
Q Consensus 194 ~~~~~~V~~~~~~ri~~V~i~ 214 (252)
+++.++|+++.++.| ++.|.
T Consensus 16 d~I~I~Vl~i~g~~V-rlGI~ 35 (76)
T PRK00568 16 DNIHIKVISIDRGSV-RLGFE 35 (76)
T ss_pred CCeEEEEEEEcCCEE-EEEEE
Confidence 579999999999863 45554
No 212
>PHA00669 hypothetical protein
Probab=34.28 E-value=98 Score=24.67 Aligned_cols=24 Identities=21% Similarity=0.402 Sum_probs=19.4
Q ss_pred CCHHHHHHHHhCC--CCCCCcEEEEe
Q 041526 144 ETVSGFVCEAFGY--IPRTGESIKVV 167 (252)
Q Consensus 144 ~TLaGlil~~lg~--iP~~Gd~i~~~ 167 (252)
.||.+=-+++||. +|.+|+.+.+.
T Consensus 37 I~LdnetL~kLg~~~lp~VG~~v~l~ 62 (114)
T PHA00669 37 ITLNNEALERLGIDALPAVGSVVMIT 62 (114)
T ss_pred EEEChHHHHHcCCCCCccCCCeEEEE
Confidence 5666667888885 99999999984
No 213
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=29.94 E-value=41 Score=28.74 Aligned_cols=46 Identities=15% Similarity=0.375 Sum_probs=33.9
Q ss_pred cCceEEEeCCcC-hHHhHhhcCC----CCCCCCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNI----KMPEGHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi----~l~~~~~~~TLaGlil~~lg~iP~ 159 (252)
.+|-|.++|+.. +..+.+.++- .++...+.+++||++..-|..+|.
T Consensus 40 ~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLReLPe 90 (199)
T cd04390 40 EEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASLLKLYLRELPE 90 (199)
T ss_pred CCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHHHHHHHHhCCC
Confidence 478999999875 5667666643 233333567999999999999995
No 214
>PRK01712 carbon storage regulator; Provisional
Probab=29.65 E-value=1e+02 Score=22.21 Aligned_cols=20 Identities=5% Similarity=0.154 Sum_probs=15.3
Q ss_pred ceEEEEEEEecCCeeeEEEEE
Q 041526 194 QIYKLEILAGNARKVSAVRFE 214 (252)
Q Consensus 194 ~~~~~~V~~~~~~ri~~V~i~ 214 (252)
++..++|+++.++. .++.|.
T Consensus 16 d~I~I~V~~i~~~~-VrlGI~ 35 (64)
T PRK01712 16 DDIEVTVLGVKGNQ-VRIGIN 35 (64)
T ss_pred CCEEEEEEEEeCCE-EEEEEE
Confidence 47999999999875 455554
No 215
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=29.60 E-value=72 Score=22.04 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=15.6
Q ss_pred ceEEEEEEEecCCeeeEEEEE
Q 041526 194 QIYKLEILAGNARKVSAVRFE 214 (252)
Q Consensus 194 ~~~~~~V~~~~~~ri~~V~i~ 214 (252)
++..++|++++++. .++.|.
T Consensus 16 ~~I~I~Vl~i~~~~-VklgI~ 35 (54)
T PF02599_consen 16 DDIEITVLEISGGQ-VKLGID 35 (54)
T ss_dssp TTEEEEEEEEETTE-EEEEEE
T ss_pred CCEEEEEEEEcCCE-EEEEEE
Confidence 58999999999776 456665
No 216
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=28.76 E-value=68 Score=33.77 Aligned_cols=54 Identities=22% Similarity=0.407 Sum_probs=45.9
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEEEEEcchhHHHHHHhhhccC
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTLEDVVEEIVGEIFDE 96 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTleDIleeIvGei~DE 96 (252)
..|+.+-+.++|..+=..|.--+.+.|.|.+ -|+++|+|++.++-++|-+ |..+
T Consensus 810 paPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~-I~~~ 863 (931)
T KOG0476|consen 810 PAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN-IYTN 863 (931)
T ss_pred CCceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh-cccC
Confidence 3457788889999999999999999999996 5999999999999999865 5443
No 217
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=28.55 E-value=63 Score=22.59 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=26.0
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEecC
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLNE 72 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE 72 (252)
.+..+++++++.++|+.+.-....+|+.+|.
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~~~~vav~~N~ 38 (65)
T PRK05863 8 EQVEVDEQTTVAALLDSLGFPEKGIAVAVDW 38 (65)
T ss_pred EEEEcCCCCcHHHHHHHcCCCCCcEEEEECC
Confidence 4566788999999999998888889988864
No 218
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=27.91 E-value=47 Score=24.78 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCceEEEecCCCC----EEEEEcchhHHHH
Q 041526 53 WNLLREFRIRKVHMAVVLNEYGG----TVGVVTLEDVVEE 88 (252)
Q Consensus 53 ~~lL~~mr~~~~~~AiVVDE~G~----~vGIVTleDIlee 88 (252)
.++.+.+.-...+..+++|..|. +.|.++.++++..
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~ 111 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKM 111 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhh
Confidence 36888888888999999998887 5566777666654
No 219
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=27.09 E-value=1.3e+02 Score=22.48 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHcCCceEEEecCCCCEEEEEcc
Q 041526 50 MSVWNLLREFRIRKVHMAVVLNEYGGTVGVVTL 82 (252)
Q Consensus 50 ~~l~~lL~~mr~~~~~~AiVVDE~G~~vGIVTl 82 (252)
..+..+.+.+++.+..+.+..|-.|+-+++|+-
T Consensus 70 ~~l~~~~~~v~~~~ad~g~~~DgDaDRl~~vd~ 102 (104)
T PF02879_consen 70 ESLQRLIKIVRESGADLGIAFDGDADRLGVVDE 102 (104)
T ss_dssp TTTHHHHHHHHHSTTSEEEEE-TTSSBEEEEET
T ss_pred chhHHHHHHhhccCceEEEEECCcCceeEEECC
Confidence 578889999999999999999999999999964
No 220
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=27.09 E-value=1e+02 Score=22.67 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=14.5
Q ss_pred ceEEEEEEEecCCeeeEEEE
Q 041526 194 QIYKLEILAGNARKVSAVRF 213 (252)
Q Consensus 194 ~~~~~~V~~~~~~ri~~V~i 213 (252)
+++.++|++++++.+ ++.|
T Consensus 16 ddI~itVl~i~gnqV-kiGi 34 (73)
T COG1551 16 DDIEITVLSIKGNQV-KIGI 34 (73)
T ss_pred CCeEEEEEEEcCCeE-EEee
Confidence 589999999999854 3444
No 221
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=26.30 E-value=73 Score=22.01 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=23.8
Q ss_pred CceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 42 PAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 42 ~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
..+.+++++++.++|+.+.-....+|+.+|
T Consensus 6 ~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN 35 (64)
T TIGR01683 6 EPVEVEDGLTLAALLESLGLDPRRVAVAVN 35 (64)
T ss_pred eEEEcCCCCcHHHHHHHcCCCCCeEEEEEC
Confidence 345678899999999999877777777775
No 222
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.59 E-value=75 Score=26.88 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=32.8
Q ss_pred cCceEEEeCCcC-hHHhHhhcCC----CCCC--CCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNI----KMPE--GHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi----~l~~--~~~~~TLaGlil~~lg~iP~ 159 (252)
.+|-|.++|+.. +..+...++- ++.. ..+.+++||++..-|..+|.
T Consensus 34 ~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPe 86 (187)
T cd04403 34 VDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPE 86 (187)
T ss_pred cCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHHHhcCCC
Confidence 479999999986 4556555542 2221 12457899999999999995
No 223
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.58 E-value=56 Score=27.79 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=33.5
Q ss_pred cCceEEEeCCcC-hHHhHhhcCC-CCC--CCCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNI-KMP--EGHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi-~l~--~~~~~~TLaGlil~~lg~iP~ 159 (252)
.+|-|.++|+.+ +..+.+.++- ..+ ...+..++||++..-|..+|.
T Consensus 40 ~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lLK~fLReLpe 89 (187)
T cd04389 40 TEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLLKLWLRELEE 89 (187)
T ss_pred CCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhCCC
Confidence 479999999876 6666665543 232 223467899999999999996
No 224
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.48 E-value=53 Score=28.46 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=33.7
Q ss_pred cCceEEEeCCcC-hHHhHhhcCC----CCCCCCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNI----KMPEGHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi----~l~~~~~~~TLaGlil~~lg~iP~ 159 (252)
.+|-|.++|+.+ +..+.+.|+- .+++..+..++||++-.-|..+|.
T Consensus 27 ~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPe 77 (206)
T cd04376 27 TVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPD 77 (206)
T ss_pred CCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCC
Confidence 579999999875 5566665543 233333567999999999999985
No 225
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=25.21 E-value=84 Score=23.54 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=26.2
Q ss_pred cCCceecCCCCcHHHHHHHHHHcCCceEEEec
Q 041526 40 HKPAYFVPDSMSVWNLLREFRIRKVHMAVVLN 71 (252)
Q Consensus 40 ~r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVD 71 (252)
...+..++++++|.++|..+.-....+|+.+|
T Consensus 24 NG~~~~~~~~~tl~~LL~~l~~~~~~vAVevN 55 (84)
T PRK06083 24 NDQSIQVDISSSLAQIIAQLSLPELGCVFAIN 55 (84)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCCCceEEEEEC
Confidence 45567889999999999999877777887775
No 226
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=24.85 E-value=58 Score=28.36 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=34.4
Q ss_pred cCceEEEeCCcChHHhHhhcCC-----CCCCCCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTSIDQLSEDLNI-----KMPEGHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~L~dl~~~lgi-----~l~~~~~~~TLaGlil~~lg~iP~ 159 (252)
..|-|.++|+..+.++.+.+.- ++.. .+..+++|.+...|..+|.
T Consensus 33 ~eGIYRvsgs~~~~~lk~~~d~~~~~~d~~~-~dv~~va~~LK~ylReLPe 82 (200)
T cd04388 33 SSTLYRTQSSSSLTELRQILDCDAASVDLEQ-FDVAALADALKRYLLDLPN 82 (200)
T ss_pred CCceeeCCCccHHHHHHHHHhcCCCCCCccc-ccHHHHHHHHHHHHHhCCC
Confidence 4699999999888888666643 2222 2467999999999999995
No 227
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=24.84 E-value=45 Score=33.70 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=17.3
Q ss_pred CeEEecCCCCEEEEEEHHHHhH
Q 041526 1 VPVFEQRIDNIVGIAYAMDLLD 22 (252)
Q Consensus 1 lPV~~~~~d~IvGiv~~kDll~ 22 (252)
++||++ ++++|+||.||+++
T Consensus 430 L~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 430 LVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred eEEEEC--CEEEEEEEehhhcc
Confidence 578886 78999999999985
No 228
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=24.29 E-value=92 Score=22.42 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCceecCCCCcHHHHHHHHHHcCCceEEEecCCCCEE
Q 041526 41 KPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTV 77 (252)
Q Consensus 41 r~~~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~v 77 (252)
.....+++.+++.++|.++.-+....|+.+| |.++
T Consensus 9 g~~~e~~~~~tv~dLL~~l~~~~~~vav~vN--g~iV 43 (68)
T COG2104 9 GKEVEIAEGTTVADLLAQLGLNPEGVAVAVN--GEIV 43 (68)
T ss_pred CEEEEcCCCCcHHHHHHHhCCCCceEEEEEC--CEEc
Confidence 4456788889999999999988888888775 5544
No 229
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=23.28 E-value=72 Score=27.81 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=36.1
Q ss_pred cCceEEEeCCcC-----hHHhHhhcCCC--CCCCCccCCHHHHHHHHhCCCCCC
Q 041526 114 AEGIYDVDANTS-----IDQLSEDLNIK--MPEGHQYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 114 ~dg~~~v~G~~~-----L~dl~~~lgi~--l~~~~~~~TLaGlil~~lg~iP~~ 160 (252)
.+|.|.+.|... +.++.+.++.. +....+.+++++.+..-|..+|..
T Consensus 68 ~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~~~~~~~~va~~LK~fLr~LpeP 121 (220)
T cd04380 68 QEGLFEEPGLPSEPGELLAEIRDALDTGSPFNSPGSAESVAEALLLFLESLPDP 121 (220)
T ss_pred ccCcccCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 478999999988 78887777543 222335789999999999999963
No 230
>PRK06437 hypothetical protein; Provisional
Probab=23.24 E-value=92 Score=22.03 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=25.7
Q ss_pred eecCCCCcHHHHHHHHHHcCCceEEEecCCCCEE
Q 041526 44 YFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTV 77 (252)
Q Consensus 44 ~~Vpe~~~l~~lL~~mr~~~~~~AiVVDE~G~~v 77 (252)
..+++.+++.++|+++.-....+|+.+| |.++
T Consensus 15 ~~i~~~~tv~dLL~~Lgi~~~~vaV~vN--g~iv 46 (67)
T PRK06437 15 IEIDHELTVNDIIKDLGLDEEEYVVIVN--GSPV 46 (67)
T ss_pred EEcCCCCcHHHHHHHcCCCCccEEEEEC--CEEC
Confidence 5678899999999999887788888876 4444
No 231
>PF00833 Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped in this family of ribosomal proteins, S17e. They include, vertebrate, Drosophila and Neurospora crassa (crp-3) S17's as well as yeast S17a (RP51A) and S17b (RP51B) and archaebacterial S17e [, , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1RQ6_A 2XZM_V 2XZN_V 3IZ6_Q 3IZB_Q 3O30_K 3O2Z_K 3U5G_R 3U5C_R.
Probab=22.42 E-value=9.9 Score=30.73 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHhC---CCCCCCcEEEEeeecccccccccccCCCCCccccccccceEEEEEEEec
Q 041526 143 YETVSGFVCEAFG---YIPRTGESIKVVVEKENQEENDEDTENGSDRQDSKEKHQIYKLEILAGN 204 (252)
Q Consensus 143 ~~TLaGlil~~lg---~iP~~Gd~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 204 (252)
-.-+|||+.+... +=|..|-++.++ ++-+.+++++.+....+...++++|
T Consensus 47 RNkIAGYvThlmKriq~g~vrgis~klq------------EeErerr~n~vpe~s~~d~~~i~VD 99 (121)
T PF00833_consen 47 RNKIAGYVTHLMKRIQRGPVRGISIKLQ------------EEERERRDNYVPEVSALDQEIIEVD 99 (121)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTCSSCCC------------CHHHHCCTSSSSSSSEEESCS-ECT
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhh------------HHHHHhhcccCCccccccCCcceeC
Confidence 3579999988875 558889988884 2235577788887777766666655
No 232
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=22.37 E-value=1.1e+02 Score=22.11 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=23.8
Q ss_pred hHHHHHHhhhccCCCcHHHHhhhcccEEEecCceEEEeCCc
Q 041526 84 DVVEEIVGEIFDESDSKEEIQKKTGYIVMRAEGIYDVDANT 124 (252)
Q Consensus 84 DIleeIvGei~DE~d~~~~~~~~~~~i~~~~dg~~~v~G~~ 124 (252)
.|.|.++..+.-.....+ .++......++|.|+|..
T Consensus 4 ~iAE~~l~~iYG~~~~~e-----kP~~v~~~~~~WiV~Gtl 39 (66)
T PF15631_consen 4 KIAEIYLKPIYGKEIEEE-----KPYRVTLDGDSWIVEGTL 39 (66)
T ss_pred HHHHHHHHHHcCchhhhc-----CCeEEecCCCeEEEEeec
Confidence 466777777765543111 256667778889999976
No 233
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=22.35 E-value=75 Score=27.02 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=33.9
Q ss_pred cCceEEEeCCcC-hHHhHhhcCCCC----CCCCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNIKM----PEGHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi~l----~~~~~~~TLaGlil~~lg~iP~ 159 (252)
.+|-|.++|+.+ +..+.+.++..- .++.+.++++|++-.-|..+|.
T Consensus 33 ~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLReLPe 83 (186)
T cd04406 33 TEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRDLPN 83 (186)
T ss_pred CCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHhCCC
Confidence 479999999877 677777664321 1122467999999999999985
No 234
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=21.56 E-value=1.7e+02 Score=21.31 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=15.0
Q ss_pred ceEEEEEEEecCCeeeEEEEE
Q 041526 194 QIYKLEILAGNARKVSAVRFE 214 (252)
Q Consensus 194 ~~~~~~V~~~~~~ri~~V~i~ 214 (252)
++..++|+++.++.+ ++.|.
T Consensus 16 d~I~I~Vl~i~g~~V-rlGI~ 35 (69)
T TIGR00202 16 DDIEVKVLSVKGDQV-KLGIE 35 (69)
T ss_pred CCEEEEEEEEcCCeE-EEEEE
Confidence 579999999987753 45554
No 235
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.56 E-value=68 Score=27.09 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=32.8
Q ss_pred cCceEEEeCCcC-hHHhHhhcCC-----CC-CCCCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNI-----KM-PEGHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi-----~l-~~~~~~~TLaGlil~~lg~iP~ 159 (252)
.+|-|.++|+.. +.++.+.|+- .+ +...+..++|+++..-|..+|.
T Consensus 33 ~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreLP~ 85 (184)
T cd04385 33 SEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPD 85 (184)
T ss_pred CCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhCCC
Confidence 479999999975 5556555532 12 2223567999999999999995
No 236
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.33 E-value=76 Score=27.59 Aligned_cols=46 Identities=13% Similarity=0.363 Sum_probs=33.0
Q ss_pred cCceEEEeCCcC-hHHhHhhcCC-----CCCCC--CccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNI-----KMPEG--HQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi-----~l~~~--~~~~TLaGlil~~lg~iP~ 159 (252)
..|-|.++|+.. +..+.+.|+- ++..+ .+..++||++..-|..+|.
T Consensus 36 ~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lLK~fLReLPe 89 (207)
T cd04379 36 VIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPE 89 (207)
T ss_pred cCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHHHHHHHhCCC
Confidence 479999999997 4556666642 23321 1346899999999999995
No 237
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=21.06 E-value=70 Score=27.44 Aligned_cols=46 Identities=15% Similarity=0.344 Sum_probs=33.8
Q ss_pred cCceEEEeCCcC-hHHhHhhcC--CC---CCCCCccCCHHHHHHHHhCCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLN--IK---MPEGHQYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lg--i~---l~~~~~~~TLaGlil~~lg~iP~~ 160 (252)
.+|-|.++|+.. +..+.+.|. -. +.. .+..++||++..-|..+|..
T Consensus 35 ~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~-~d~h~vaslLK~fLReLPeP 86 (193)
T cd04382 35 EEGLYRVSGSEREVKALKEKFLRGKTVPNLSK-VDIHVICGCLKDFLRSLKEP 86 (193)
T ss_pred CCCeeecCCcHHHHHHHHHHHHcCCCCccccc-CCHHHHHHHHHHHHHhCCCc
Confidence 479999999876 666666663 22 222 25689999999999999963
No 238
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=21.02 E-value=71 Score=27.17 Aligned_cols=46 Identities=15% Similarity=0.376 Sum_probs=33.9
Q ss_pred cCceEEEeCCcC-hHHhHhhcCCC---C---CCCCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNIK---M---PEGHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi~---l---~~~~~~~TLaGlil~~lg~iP~ 159 (252)
.+|-|.++|+.+ +..+.+.|+-. + ....+..++||++..-|..+|.
T Consensus 36 ~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK~fLReLPe 88 (188)
T cd04383 36 HQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLKLYFRGLEN 88 (188)
T ss_pred CCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHHHHHHhCCC
Confidence 479999999987 77777766431 1 1122457899999999999995
No 239
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=20.75 E-value=81 Score=26.80 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=33.1
Q ss_pred cCceEEEeCCcC-hHHhHhhcCCC---CC-CCCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNIK---MP-EGHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi~---l~-~~~~~~TLaGlil~~lg~iP~ 159 (252)
.+|-|.++|+.+ +..+.+.|+.. +. ++.+.+++||++-.-|..+|.
T Consensus 33 ~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flReLPe 83 (186)
T cd04407 33 TEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRELPE 83 (186)
T ss_pred CCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHhCCC
Confidence 479999999876 56666655431 11 122467999999999999996
No 240
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.56 E-value=98 Score=26.61 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=32.8
Q ss_pred cCceEEEeCCcC-hHHhHhhcCCC--CCCCCccCCHHHHHHHHhCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNIK--MPEGHQYETVSGFVCEAFGYIPR 159 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi~--l~~~~~~~TLaGlil~~lg~iP~ 159 (252)
.+|-|.++|+.. +..+.+.++-. ........++|+++-.-|..+|.
T Consensus 37 ~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~vaslLK~flReLPe 85 (202)
T cd04394 37 TEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQFFRELPE 85 (202)
T ss_pred CCCeeeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHHHHhcCCC
Confidence 478999999876 66666666432 22222346799999999999986
No 241
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=20.40 E-value=88 Score=26.88 Aligned_cols=47 Identities=17% Similarity=0.346 Sum_probs=33.8
Q ss_pred cCceEEEeCCcC-hHHhHhhcCCC---C---CCCCccCCHHHHHHHHhCCCCCC
Q 041526 114 AEGIYDVDANTS-IDQLSEDLNIK---M---PEGHQYETVSGFVCEAFGYIPRT 160 (252)
Q Consensus 114 ~dg~~~v~G~~~-L~dl~~~lgi~---l---~~~~~~~TLaGlil~~lg~iP~~ 160 (252)
.+|-|.++|+.+ +..+.+.++-. . ....+.+++||++..-|..+|..
T Consensus 34 ~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPeP 87 (196)
T cd04387 34 EVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEP 87 (196)
T ss_pred CCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHhCCCc
Confidence 479999999985 66666666432 1 11234678999999999999963
No 242
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=20.00 E-value=2e+02 Score=28.27 Aligned_cols=84 Identities=13% Similarity=0.255 Sum_probs=46.9
Q ss_pred cCCCCcHHHHHHHHHHc-------CCceEEEecCC-C---CEEEEEcchhHHHHHHhhhccCCCcHHHHhhhcccEEEec
Q 041526 46 VPDSMSVWNLLREFRIR-------KVHMAVVLNEY-G---GTVGVVTLEDVVEEIVGEIFDESDSKEEIQKKTGYIVMRA 114 (252)
Q Consensus 46 Vpe~~~l~~lL~~mr~~-------~~~~AiVVDE~-G---~~vGIVTleDIleeIvGei~DE~d~~~~~~~~~~~i~~~~ 114 (252)
+--...+...++.+-+. ..++..|.++| | .+.|++|-.||+.+|-|....+.=--... +.+ .
T Consensus 324 ~vtG~~~~~~~~~~~~~l~~~~~~~v~v~~i~N~ffG~~vtV~GLltg~Dii~~l~~~~~gd~lliP~~------ml~-~ 396 (433)
T TIGR03279 324 WVVGNAVEQAFEPLVERLNAVEGLELDLHGLASDYWGQEITVTGLLTGQDLIAGLKGKDLGDGLLLPSV------MLK-H 396 (433)
T ss_pred EEEeccHHHHHHHHHHHHhcCCCcEEEEEEeccCCCCCCeeEeecccHHHHHHHhCCCCCCCeEEecHH------Hhc-C
Confidence 33344455555555442 34445566664 5 48899999999999976432211000111 111 2
Q ss_pred CceEEEeCCcChHHhHhhcCCCC
Q 041526 115 EGIYDVDANTSIDQLSEDLNIKM 137 (252)
Q Consensus 115 dg~~~v~G~~~L~dl~~~lgi~l 137 (252)
++...+| .+++.++++.+|.++
T Consensus 397 ~~~~fLD-d~t~~~l~~~l~~~v 418 (433)
T TIGR03279 397 GELVFLD-DLTVEEVAEALGTPI 418 (433)
T ss_pred CCCeECC-CCcHHHHHHHhCCcE
Confidence 2222233 567999999998875
Done!