Query 041535
Match_columns 216
No_of_seqs 176 out of 1468
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.5E-28 1.6E-32 218.6 19.3 202 3-213 18-238 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.6 1.4E-15 3.1E-20 123.5 9.1 76 138-214 1-78 (287)
3 PLN03210 Resistant to P. syrin 99.0 3.9E-10 8.4E-15 107.4 7.0 57 133-192 184-242 (1153)
4 cd01128 rho_factor Transcripti 98.8 6.5E-09 1.4E-13 82.7 5.9 53 152-206 14-68 (249)
5 PRK09376 rho transcription ter 98.7 1.5E-08 3.2E-13 84.6 5.4 61 145-207 159-222 (416)
6 PTZ00202 tuzin; Provisional 98.6 6.6E-07 1.4E-11 75.8 10.6 75 132-215 261-338 (550)
7 PRK00411 cdc6 cell division co 98.6 4.2E-07 9.2E-12 77.2 9.4 80 132-212 29-112 (394)
8 TIGR02928 orc1/cdc6 family rep 98.5 6.2E-07 1.3E-11 75.4 9.1 79 132-210 14-99 (365)
9 PRK08118 topology modulation p 98.5 1E-07 2.2E-12 71.5 3.1 52 155-208 2-58 (167)
10 PF13191 AAA_16: AAA ATPase do 98.5 1.4E-07 3.1E-12 71.3 4.0 73 135-210 2-82 (185)
11 TIGR00767 rho transcription te 98.4 6.4E-07 1.4E-11 75.2 6.5 54 152-207 166-221 (415)
12 PRK11331 5-methylcytosine-spec 98.3 3.4E-06 7.4E-11 72.0 9.6 69 133-204 175-243 (459)
13 cd00009 AAA The AAA+ (ATPases 98.3 5E-06 1.1E-10 59.8 7.5 61 136-199 1-61 (151)
14 PF13401 AAA_22: AAA domain; P 98.2 1.3E-06 2.9E-11 62.3 4.2 62 154-215 4-67 (131)
15 PF01637 Arch_ATPase: Archaeal 98.2 1.9E-06 4.1E-11 67.3 4.6 44 135-178 1-44 (234)
16 TIGR03015 pepcterm_ATPase puta 98.1 2E-05 4.3E-10 63.4 9.7 60 151-214 40-99 (269)
17 PF05496 RuvB_N: Holliday junc 98.0 1E-05 2.2E-10 62.9 5.4 50 133-185 24-78 (233)
18 PRK07261 topology modulation p 97.9 3.3E-05 7.1E-10 58.1 5.9 51 156-207 2-53 (171)
19 KOG2004 Mitochondrial ATP-depe 97.9 0.00085 1.8E-08 60.0 14.9 49 134-185 412-466 (906)
20 TIGR00635 ruvB Holliday juncti 97.9 1.9E-05 4.2E-10 64.8 4.7 46 133-178 4-54 (305)
21 PF13207 AAA_17: AAA domain; P 97.9 1.6E-05 3.6E-10 55.9 3.7 23 156-178 1-23 (121)
22 PRK13342 recombination factor 97.8 4.5E-05 9.8E-10 65.4 6.9 46 133-178 12-60 (413)
23 KOG2543 Origin recognition com 97.8 0.00014 3E-09 60.4 8.5 75 132-212 5-82 (438)
24 PF05729 NACHT: NACHT domain 97.7 6.5E-05 1.4E-09 55.5 5.4 44 155-199 1-48 (166)
25 COG1474 CDC6 Cdc6-related prot 97.7 0.00022 4.8E-09 60.0 9.1 78 133-211 17-98 (366)
26 PRK00080 ruvB Holliday junctio 97.7 7.4E-05 1.6E-09 62.1 6.1 46 133-178 25-75 (328)
27 smart00763 AAA_PrkA PrkA AAA d 97.7 0.00015 3.2E-09 60.4 7.3 56 134-190 52-118 (361)
28 TIGR02903 spore_lon_C ATP-depe 97.7 0.0019 4.1E-08 58.2 14.7 61 133-194 154-217 (615)
29 TIGR03420 DnaA_homol_Hda DnaA 97.6 9.7E-05 2.1E-09 57.8 5.3 55 138-195 22-76 (226)
30 KOG2028 ATPase related to the 97.6 0.00012 2.6E-09 60.7 5.7 48 145-197 153-200 (554)
31 COG0466 Lon ATP-dependent Lon 97.6 0.0019 4E-08 57.9 12.8 50 133-185 323-378 (782)
32 PRK06696 uridine kinase; Valid 97.6 0.00017 3.6E-09 56.7 5.6 41 138-178 3-46 (223)
33 COG2256 MGS1 ATPase related to 97.5 0.0002 4.3E-09 59.9 6.0 48 135-185 26-76 (436)
34 CHL00095 clpC Clp protease ATP 97.5 0.00014 3.1E-09 67.5 5.2 46 133-178 179-224 (821)
35 PRK12402 replication factor C 97.5 0.0002 4.3E-09 59.5 5.1 46 133-178 15-60 (337)
36 TIGR00763 lon ATP-dependent pr 97.4 0.0032 7E-08 58.3 13.3 46 133-178 320-371 (775)
37 PRK15455 PrkA family serine pr 97.4 0.00019 4.1E-09 63.1 4.9 45 134-178 77-127 (644)
38 PRK00440 rfc replication facto 97.4 0.00075 1.6E-08 55.5 8.3 46 133-178 17-62 (319)
39 PF00485 PRK: Phosphoribulokin 97.4 0.00013 2.9E-09 55.9 3.6 23 156-178 1-23 (194)
40 PTZ00112 origin recognition co 97.4 0.00052 1.1E-08 63.2 7.6 79 132-210 754-841 (1164)
41 PF13238 AAA_18: AAA domain; P 97.4 0.00015 3.3E-09 51.2 3.4 21 157-177 1-21 (129)
42 PTZ00301 uridine kinase; Provi 97.4 0.00022 4.7E-09 55.5 4.5 25 154-178 3-27 (210)
43 PRK06547 hypothetical protein; 97.4 0.00029 6.4E-09 53.0 5.1 34 145-178 6-39 (172)
44 PRK05564 DNA polymerase III su 97.4 0.00095 2.1E-08 55.1 8.6 79 133-212 4-87 (313)
45 PRK05480 uridine/cytidine kina 97.4 0.00017 3.8E-09 55.9 4.0 27 152-178 4-30 (209)
46 COG1618 Predicted nucleotide k 97.4 0.00022 4.7E-09 52.5 4.2 25 154-178 5-29 (179)
47 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00022 4.8E-09 66.3 5.3 46 133-178 187-232 (852)
48 PRK08233 hypothetical protein; 97.4 0.00018 3.8E-09 54.3 3.7 25 154-178 3-27 (182)
49 TIGR02639 ClpA ATP-dependent C 97.4 0.00026 5.7E-09 65.0 5.3 46 133-178 182-227 (731)
50 TIGR00235 udk uridine kinase. 97.4 0.00017 3.6E-09 55.9 3.5 26 153-178 5-30 (207)
51 PF13173 AAA_14: AAA domain 97.4 0.00036 7.8E-09 49.8 4.8 41 154-198 2-42 (128)
52 PRK13341 recombination factor 97.4 0.00028 6.1E-09 64.3 5.2 49 134-185 29-80 (725)
53 PLN03025 replication factor C 97.3 0.00093 2E-08 55.3 7.8 46 133-178 13-58 (319)
54 PRK09270 nucleoside triphospha 97.3 0.00036 7.8E-09 55.0 5.1 27 152-178 31-57 (229)
55 COG2255 RuvB Holliday junction 97.3 0.00036 7.7E-09 56.0 4.9 46 133-178 26-76 (332)
56 KOG1532 GTPase XAB1, interacts 97.3 0.00065 1.4E-08 54.2 6.2 60 153-215 18-88 (366)
57 PRK10865 protein disaggregatio 97.3 0.00035 7.5E-09 65.2 5.3 46 133-178 178-223 (857)
58 PHA00729 NTP-binding motif con 97.3 0.00042 9E-09 54.2 4.9 36 143-178 6-41 (226)
59 PRK07667 uridine kinase; Provi 97.3 0.00043 9.3E-09 53.1 5.0 37 142-178 3-41 (193)
60 PRK04195 replication factor C 97.3 0.0003 6.5E-09 61.6 4.4 46 133-178 14-63 (482)
61 TIGR02237 recomb_radB DNA repa 97.3 0.00078 1.7E-08 52.1 6.3 48 153-204 11-58 (209)
62 PRK05541 adenylylsulfate kinas 97.3 0.00036 7.7E-09 52.6 4.2 36 153-191 6-41 (176)
63 TIGR01242 26Sp45 26S proteasom 97.3 0.0005 1.1E-08 58.0 5.4 46 133-178 122-180 (364)
64 PRK10787 DNA-binding ATP-depen 97.3 0.0035 7.7E-08 57.9 11.2 47 132-178 321-373 (784)
65 PF00448 SRP54: SRP54-type pro 97.3 0.00076 1.6E-08 51.9 5.9 57 154-213 1-58 (196)
66 PRK06762 hypothetical protein; 97.3 0.00031 6.7E-09 52.3 3.6 25 154-178 2-26 (166)
67 PF13671 AAA_33: AAA domain; P 97.2 0.00037 8.1E-09 50.3 3.7 23 156-178 1-23 (143)
68 PRK08727 hypothetical protein; 97.2 0.00099 2.1E-08 52.7 6.3 60 133-195 20-79 (233)
69 PF05621 TniB: Bacterial TniB 97.2 0.0035 7.5E-08 51.0 9.3 61 153-214 60-124 (302)
70 TIGR02881 spore_V_K stage V sp 97.2 0.0006 1.3E-08 54.8 5.0 45 134-178 7-66 (261)
71 TIGR03346 chaperone_ClpB ATP-d 97.2 0.00057 1.2E-08 63.8 5.4 46 133-178 173-218 (852)
72 PRK03992 proteasome-activating 97.2 0.0006 1.3E-08 58.0 5.0 46 133-178 131-189 (389)
73 smart00382 AAA ATPases associa 97.2 0.00054 1.2E-08 48.5 4.1 24 155-178 3-26 (148)
74 cd02023 UMPK Uridine monophosp 97.2 0.0003 6.4E-09 54.1 2.9 23 156-178 1-23 (198)
75 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00041 8.8E-09 52.6 3.5 26 153-178 2-27 (188)
76 cd02019 NK Nucleoside/nucleoti 97.2 0.00041 8.9E-09 43.9 3.0 22 156-177 1-22 (69)
77 PHA02544 44 clamp loader, smal 97.2 0.00062 1.3E-08 56.1 4.9 46 133-178 21-67 (316)
78 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0016 3.4E-08 51.3 6.7 57 153-211 18-78 (235)
79 PRK03839 putative kinase; Prov 97.1 0.00046 9.9E-09 52.2 3.4 23 156-178 2-24 (180)
80 COG0572 Udk Uridine kinase [Nu 97.1 0.0008 1.7E-08 52.2 4.7 26 153-178 7-32 (218)
81 PF04665 Pox_A32: Poxvirus A32 97.1 0.00083 1.8E-08 53.1 4.7 37 154-193 13-49 (241)
82 PRK04040 adenylate kinase; Pro 97.1 0.00054 1.2E-08 52.4 3.6 25 154-178 2-26 (188)
83 cd02025 PanK Pantothenate kina 97.1 0.00037 8.1E-09 54.6 2.8 23 156-178 1-23 (220)
84 PF03205 MobB: Molybdopterin g 97.1 0.0011 2.3E-08 48.3 4.9 39 155-195 1-39 (140)
85 PRK12727 flagellar biosynthesi 97.1 0.019 4.1E-07 50.5 13.2 26 153-178 349-374 (559)
86 PRK08903 DnaA regulatory inact 97.1 0.0014 3.1E-08 51.4 5.9 44 135-178 21-66 (227)
87 COG1428 Deoxynucleoside kinase 97.1 0.00054 1.2E-08 52.6 3.3 25 154-178 4-28 (216)
88 PRK14963 DNA polymerase III su 97.1 0.00081 1.8E-08 59.0 4.9 46 133-178 14-60 (504)
89 TIGR00554 panK_bact pantothena 97.1 0.00085 1.8E-08 54.7 4.6 26 152-177 60-85 (290)
90 PF00004 AAA: ATPase family as 97.1 0.00059 1.3E-08 48.3 3.3 22 157-178 1-22 (132)
91 PRK06893 DNA replication initi 97.1 0.0019 4E-08 51.0 6.4 39 153-194 38-76 (229)
92 PRK14957 DNA polymerase III su 97.1 0.0033 7.1E-08 55.7 8.5 46 133-178 16-62 (546)
93 PRK14949 DNA polymerase III su 97.0 0.003 6.4E-08 58.5 8.4 46 133-178 16-62 (944)
94 PRK14962 DNA polymerase III su 97.0 0.00099 2.2E-08 58.0 5.1 46 133-178 14-60 (472)
95 cd02024 NRK1 Nicotinamide ribo 97.0 0.00052 1.1E-08 52.3 2.9 23 156-178 1-23 (187)
96 PF00625 Guanylate_kin: Guanyl 97.0 0.0012 2.5E-08 50.1 4.9 38 154-194 2-39 (183)
97 PRK10463 hydrogenase nickel in 97.0 0.0024 5.1E-08 51.9 6.7 37 142-178 92-128 (290)
98 COG0467 RAD55 RecA-superfamily 97.0 0.0024 5.1E-08 51.3 6.8 55 152-212 21-75 (260)
99 PRK11034 clpA ATP-dependent Cl 97.0 0.00098 2.1E-08 61.2 4.9 46 133-178 186-231 (758)
100 CHL00181 cbbX CbbX; Provisiona 97.0 0.0016 3.4E-08 53.2 5.5 45 134-178 24-83 (287)
101 TIGR03499 FlhF flagellar biosy 97.0 0.002 4.4E-08 52.4 6.2 26 153-178 193-218 (282)
102 TIGR02322 phosphon_PhnN phosph 97.0 0.00074 1.6E-08 50.9 3.4 24 155-178 2-25 (179)
103 PLN03187 meiotic recombination 97.0 0.0025 5.4E-08 53.2 6.8 61 153-214 125-188 (344)
104 cd01120 RecA-like_NTPases RecA 97.0 0.0011 2.3E-08 48.6 4.2 40 156-198 1-40 (165)
105 PRK14958 DNA polymerase III su 97.0 0.0043 9.2E-08 54.7 8.4 78 133-212 16-113 (509)
106 TIGR02236 recomb_radA DNA repa 97.0 0.0038 8.2E-08 51.5 7.7 59 153-213 94-156 (310)
107 TIGR03263 guanyl_kin guanylate 97.0 0.00068 1.5E-08 51.1 3.0 24 155-178 2-25 (180)
108 COG3640 CooC CO dehydrogenase 97.0 0.0018 3.8E-08 50.7 5.2 44 156-201 2-45 (255)
109 PF08477 Miro: Miro-like prote 96.9 0.00082 1.8E-08 46.8 3.2 22 157-178 2-23 (119)
110 TIGR00073 hypB hydrogenase acc 96.9 0.0011 2.4E-08 51.4 4.1 31 148-178 16-46 (207)
111 cd02028 UMPK_like Uridine mono 96.9 0.0007 1.5E-08 51.3 2.9 23 156-178 1-23 (179)
112 PRK10751 molybdopterin-guanine 96.9 0.00092 2E-08 50.3 3.5 26 153-178 5-30 (173)
113 PRK00771 signal recognition pa 96.9 0.0041 8.9E-08 53.6 7.8 57 153-213 94-152 (437)
114 PRK13765 ATP-dependent proteas 96.9 0.0024 5.1E-08 57.5 6.6 75 133-212 31-105 (637)
115 PRK04841 transcriptional regul 96.9 0.0025 5.3E-08 59.9 7.1 67 134-211 15-83 (903)
116 TIGR00764 lon_rel lon-related 96.9 0.0044 9.4E-08 55.8 8.3 75 133-212 18-92 (608)
117 PRK14961 DNA polymerase III su 96.9 0.0016 3.5E-08 54.9 5.3 46 133-178 16-62 (363)
118 PRK08084 DNA replication initi 96.9 0.002 4.3E-08 51.0 5.4 46 133-178 23-69 (235)
119 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00075 1.6E-08 51.0 3.0 23 156-178 1-23 (183)
120 PRK14951 DNA polymerase III su 96.9 0.0038 8.1E-08 56.1 7.7 46 133-178 16-62 (618)
121 cd01393 recA_like RecA is a b 96.9 0.0027 6E-08 49.6 6.1 48 153-203 18-71 (226)
122 TIGR02238 recomb_DMC1 meiotic 96.9 0.005 1.1E-07 50.8 7.9 60 153-214 95-158 (313)
123 PRK09361 radB DNA repair and r 96.9 0.0025 5.4E-08 49.9 5.9 46 153-202 22-67 (225)
124 PRK00300 gmk guanylate kinase; 96.9 0.00089 1.9E-08 51.6 3.2 26 153-178 4-29 (205)
125 PRK06217 hypothetical protein; 96.9 0.0009 1.9E-08 50.8 3.2 37 155-193 2-40 (183)
126 PF07728 AAA_5: AAA domain (dy 96.9 0.0038 8.2E-08 44.9 6.3 41 157-203 2-42 (139)
127 TIGR02030 BchI-ChlI magnesium 96.9 0.002 4.3E-08 53.7 5.4 46 133-178 4-49 (337)
128 cd00071 GMPK Guanosine monopho 96.9 0.001 2.2E-08 48.1 3.3 23 156-178 1-23 (137)
129 cd02020 CMPK Cytidine monophos 96.9 0.0009 1.9E-08 48.5 3.0 23 156-178 1-23 (147)
130 PF00158 Sigma54_activat: Sigm 96.9 0.0069 1.5E-07 45.4 7.8 68 135-207 1-71 (168)
131 PRK00625 shikimate kinase; Pro 96.9 0.00098 2.1E-08 50.2 3.2 23 156-178 2-24 (173)
132 PRK00131 aroK shikimate kinase 96.8 0.0012 2.7E-08 49.1 3.6 25 154-178 4-28 (175)
133 PRK00889 adenylylsulfate kinas 96.8 0.0012 2.6E-08 49.6 3.5 26 153-178 3-28 (175)
134 PLN03186 DNA repair protein RA 96.8 0.005 1.1E-07 51.4 7.4 60 153-214 122-185 (342)
135 TIGR01425 SRP54_euk signal rec 96.8 0.068 1.5E-06 46.0 14.3 26 153-178 99-124 (429)
136 PRK04301 radA DNA repair and r 96.8 0.0043 9.3E-08 51.4 6.9 59 153-213 101-163 (317)
137 CHL00081 chlI Mg-protoporyphyr 96.8 0.0022 4.7E-08 53.6 5.1 46 133-178 17-62 (350)
138 cd01394 radB RadB. The archaea 96.8 0.0038 8.1E-08 48.6 6.3 43 153-198 18-60 (218)
139 TIGR00390 hslU ATP-dependent p 96.8 0.0055 1.2E-07 52.2 7.5 74 133-209 12-103 (441)
140 PRK10536 hypothetical protein; 96.8 0.0033 7.2E-08 50.2 5.8 52 135-189 57-108 (262)
141 PTZ00454 26S protease regulato 96.8 0.002 4.3E-08 55.0 4.9 46 133-178 145-203 (398)
142 PRK12724 flagellar biosynthesi 96.8 0.0031 6.7E-08 53.8 5.9 25 154-178 223-247 (432)
143 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0032 6.8E-08 45.3 5.1 38 141-178 7-46 (133)
144 PRK14956 DNA polymerase III su 96.8 0.0019 4.2E-08 56.0 4.7 46 133-178 18-64 (484)
145 cd01133 F1-ATPase_beta F1 ATP 96.8 0.003 6.5E-08 50.9 5.5 53 153-208 68-122 (274)
146 PRK09087 hypothetical protein; 96.8 0.004 8.6E-08 49.0 6.1 28 151-178 41-68 (226)
147 PF08423 Rad51: Rad51; InterP 96.8 0.01 2.2E-07 47.6 8.5 59 153-213 37-99 (256)
148 TIGR02012 tigrfam_recA protein 96.8 0.0019 4.1E-08 53.3 4.4 53 153-213 54-106 (321)
149 PRK13949 shikimate kinase; Pro 96.8 0.0013 2.8E-08 49.4 3.2 24 155-178 2-25 (169)
150 PRK14955 DNA polymerase III su 96.8 0.0023 4.9E-08 54.7 5.0 46 133-178 16-62 (397)
151 PRK13975 thymidylate kinase; P 96.8 0.0015 3.2E-08 50.0 3.5 24 155-178 3-26 (196)
152 PRK10078 ribose 1,5-bisphospho 96.8 0.0012 2.7E-08 50.2 3.1 24 155-178 3-26 (186)
153 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0053 1.2E-07 50.8 7.0 59 153-213 95-157 (316)
154 cd00227 CPT Chloramphenicol (C 96.8 0.0014 3.1E-08 49.3 3.4 24 155-178 3-26 (175)
155 PRK03846 adenylylsulfate kinas 96.7 0.0016 3.5E-08 50.1 3.7 27 152-178 22-48 (198)
156 TIGR00176 mobB molybdopterin-g 96.7 0.0022 4.8E-08 47.4 4.2 23 156-178 1-23 (155)
157 cd02021 GntK Gluconate kinase 96.7 0.0013 2.9E-08 48.0 2.9 23 156-178 1-23 (150)
158 PRK14530 adenylate kinase; Pro 96.7 0.0015 3.2E-08 50.9 3.4 23 156-178 5-27 (215)
159 PRK13947 shikimate kinase; Pro 96.7 0.0016 3.4E-08 48.7 3.3 23 156-178 3-25 (171)
160 PRK11889 flhF flagellar biosyn 96.7 0.0043 9.4E-08 52.6 6.1 26 153-178 240-265 (436)
161 PRK13695 putative NTPase; Prov 96.7 0.0023 5E-08 48.1 4.2 23 156-178 2-24 (174)
162 TIGR00064 ftsY signal recognit 96.7 0.0055 1.2E-07 49.6 6.6 27 152-178 70-96 (272)
163 PTZ00035 Rad51 protein; Provis 96.7 0.011 2.3E-07 49.4 8.5 60 153-214 117-180 (337)
164 PRK12608 transcription termina 96.7 0.0059 1.3E-07 51.3 6.9 71 141-213 119-192 (380)
165 PRK08533 flagellar accessory p 96.7 0.0056 1.2E-07 48.3 6.5 53 153-212 23-76 (230)
166 PF01583 APS_kinase: Adenylyls 96.7 0.0021 4.5E-08 47.5 3.7 25 154-178 2-26 (156)
167 PF00005 ABC_tran: ABC transpo 96.7 0.0015 3.2E-08 46.9 2.9 25 154-178 11-35 (137)
168 PF00910 RNA_helicase: RNA hel 96.7 0.0014 3E-08 45.3 2.6 22 157-178 1-22 (107)
169 PRK14722 flhF flagellar biosyn 96.7 0.0059 1.3E-07 51.5 6.9 59 153-213 136-196 (374)
170 TIGR01287 nifH nitrogenase iro 96.7 0.0013 2.8E-08 53.2 2.8 24 155-178 1-24 (275)
171 cd03115 SRP The signal recogni 96.7 0.0038 8.2E-08 46.8 5.2 24 155-178 1-24 (173)
172 cd00464 SK Shikimate kinase (S 96.7 0.0017 3.7E-08 47.5 3.2 22 157-178 2-23 (154)
173 TIGR00041 DTMP_kinase thymidyl 96.7 0.0057 1.2E-07 46.7 6.2 24 155-178 4-27 (195)
174 PRK14974 cell division protein 96.7 0.0048 1E-07 51.4 6.0 57 153-213 139-197 (336)
175 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0019 4.1E-08 44.6 3.1 23 153-175 14-36 (107)
176 COG1126 GlnQ ABC-type polar am 96.7 0.0017 3.7E-08 50.2 3.1 26 153-178 27-52 (240)
177 PTZ00361 26 proteosome regulat 96.7 0.0032 7E-08 54.3 5.2 45 134-178 184-241 (438)
178 COG1120 FepC ABC-type cobalami 96.7 0.0015 3.3E-08 52.1 3.0 26 153-178 27-52 (258)
179 COG1124 DppF ABC-type dipeptid 96.6 0.0028 6.1E-08 49.8 4.3 25 153-177 32-56 (252)
180 TIGR02902 spore_lonB ATP-depen 96.6 0.005 1.1E-07 54.6 6.4 45 134-178 66-110 (531)
181 COG1936 Predicted nucleotide k 96.6 0.0016 3.4E-08 48.5 2.7 20 156-175 2-21 (180)
182 PRK05642 DNA replication initi 96.6 0.0091 2E-07 47.2 7.3 38 154-194 45-82 (234)
183 PRK05057 aroK shikimate kinase 96.6 0.0021 4.5E-08 48.4 3.5 25 154-178 4-28 (172)
184 PF07726 AAA_3: ATPase family 96.6 0.0024 5.2E-08 45.4 3.5 40 157-202 2-41 (131)
185 TIGR02640 gas_vesic_GvpN gas v 96.6 0.0074 1.6E-07 48.6 6.8 55 141-203 10-64 (262)
186 PRK09354 recA recombinase A; P 96.6 0.003 6.4E-08 52.7 4.5 53 153-213 59-111 (349)
187 TIGR01313 therm_gnt_kin carboh 96.6 0.0016 3.4E-08 48.3 2.6 22 157-178 1-22 (163)
188 COG1116 TauB ABC-type nitrate/ 96.6 0.0018 3.8E-08 51.1 3.0 26 153-178 28-53 (248)
189 COG1100 GTPase SAR1 and relate 96.6 0.0016 3.4E-08 50.5 2.8 24 155-178 6-29 (219)
190 TIGR02880 cbbX_cfxQ probable R 96.6 0.0057 1.2E-07 49.8 6.1 45 134-178 23-82 (284)
191 PRK14527 adenylate kinase; Pro 96.6 0.0024 5.3E-08 48.7 3.7 26 153-178 5-30 (191)
192 PRK06067 flagellar accessory p 96.6 0.0065 1.4E-07 47.9 6.2 55 153-213 24-78 (234)
193 COG0541 Ffh Signal recognition 96.6 0.19 4.1E-06 43.0 15.0 57 153-213 99-157 (451)
194 cd00983 recA RecA is a bacter 96.6 0.0037 8E-08 51.7 4.9 44 153-199 54-97 (325)
195 PRK06761 hypothetical protein; 96.6 0.0053 1.2E-07 49.8 5.7 24 155-178 4-27 (282)
196 PRK12726 flagellar biosynthesi 96.6 0.014 3E-07 49.3 8.3 57 153-213 205-263 (407)
197 PRK06620 hypothetical protein; 96.6 0.002 4.3E-08 50.3 3.2 47 132-178 16-68 (214)
198 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.0091 2E-07 46.8 7.0 54 153-212 19-72 (229)
199 PRK05439 pantothenate kinase; 96.6 0.0047 1E-07 50.8 5.3 27 152-178 84-110 (311)
200 PRK09825 idnK D-gluconate kina 96.6 0.0023 5.1E-08 48.3 3.3 24 155-178 4-27 (176)
201 COG0563 Adk Adenylate kinase a 96.5 0.0024 5.2E-08 48.4 3.3 23 156-178 2-24 (178)
202 TIGR03689 pup_AAA proteasome A 96.5 0.006 1.3E-07 53.5 6.1 45 134-178 183-240 (512)
203 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0022 4.7E-08 50.0 3.1 26 153-178 29-54 (218)
204 cd01672 TMPK Thymidine monopho 96.5 0.0024 5.3E-08 48.6 3.3 23 156-178 2-24 (200)
205 PRK04182 cytidylate kinase; Pr 96.5 0.0026 5.6E-08 47.7 3.4 23 156-178 2-24 (180)
206 PRK07003 DNA polymerase III su 96.5 0.011 2.5E-07 53.9 7.9 46 133-178 16-62 (830)
207 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0022 4.9E-08 49.6 3.1 26 153-178 26-51 (211)
208 PRK05896 DNA polymerase III su 96.5 0.0039 8.5E-08 55.6 4.9 46 133-178 16-62 (605)
209 PRK13232 nifH nitrogenase redu 96.5 0.002 4.4E-08 52.1 2.9 24 155-178 2-25 (273)
210 PF03193 DUF258: Protein of un 96.5 0.0044 9.6E-08 46.0 4.5 36 140-178 24-59 (161)
211 PF13521 AAA_28: AAA domain; P 96.5 0.0022 4.9E-08 47.6 3.0 21 157-177 2-22 (163)
212 PF01926 MMR_HSR1: 50S ribosom 96.5 0.0027 5.7E-08 44.2 3.1 21 157-177 2-22 (116)
213 cd01131 PilT Pilus retraction 96.5 0.0042 9.1E-08 47.8 4.5 24 155-178 2-25 (198)
214 cd02117 NifH_like This family 96.5 0.0021 4.6E-08 49.9 2.9 24 155-178 1-24 (212)
215 COG0468 RecA RecA/RadA recombi 96.5 0.0078 1.7E-07 48.7 6.2 49 153-204 59-107 (279)
216 PRK13230 nitrogenase reductase 96.5 0.0021 4.6E-08 52.1 3.0 24 155-178 2-25 (279)
217 cd04139 RalA_RalB RalA/RalB su 96.5 0.0023 5.1E-08 46.9 2.9 23 156-178 2-24 (164)
218 PRK14969 DNA polymerase III su 96.5 0.016 3.5E-07 51.3 8.6 46 133-178 16-62 (527)
219 PF03266 NTPase_1: NTPase; In 96.5 0.0026 5.7E-08 47.7 3.2 22 157-178 2-23 (168)
220 PRK12339 2-phosphoglycerate ki 96.5 0.0032 6.9E-08 48.5 3.7 25 154-178 3-27 (197)
221 KOG0727 26S proteasome regulat 96.5 0.12 2.6E-06 41.3 12.4 44 135-178 157-213 (408)
222 TIGR01166 cbiO cobalt transpor 96.5 0.0024 5.3E-08 48.6 3.1 26 153-178 17-42 (190)
223 PRK12377 putative replication 96.5 0.0026 5.7E-08 50.7 3.3 40 153-195 100-139 (248)
224 cd02027 APSK Adenosine 5'-phos 96.5 0.0021 4.6E-08 47.1 2.6 23 156-178 1-23 (149)
225 TIGR00960 3a0501s02 Type II (G 96.5 0.0024 5.3E-08 49.6 3.1 26 153-178 28-53 (216)
226 PRK13946 shikimate kinase; Pro 96.5 0.0031 6.7E-08 47.9 3.6 25 154-178 10-34 (184)
227 COG1102 Cmk Cytidylate kinase 96.5 0.0025 5.5E-08 47.0 2.9 23 156-178 2-24 (179)
228 PLN02796 D-glycerate 3-kinase 96.5 0.0026 5.5E-08 52.9 3.3 26 153-178 99-124 (347)
229 PRK13236 nitrogenase reductase 96.5 0.0026 5.7E-08 52.1 3.4 28 151-178 3-30 (296)
230 PRK05201 hslU ATP-dependent pr 96.5 0.0099 2.2E-07 50.8 6.8 46 133-178 15-74 (443)
231 COG2019 AdkA Archaeal adenylat 96.5 0.0027 5.9E-08 47.1 3.0 24 154-177 4-27 (189)
232 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.018 3.8E-07 45.6 8.0 55 153-213 20-74 (237)
233 PRK14964 DNA polymerase III su 96.5 0.0044 9.6E-08 54.1 4.8 44 133-176 13-57 (491)
234 PRK14970 DNA polymerase III su 96.5 0.0053 1.1E-07 51.8 5.2 46 133-178 17-63 (367)
235 PRK06835 DNA replication prote 96.5 0.22 4.8E-06 41.5 14.6 39 154-195 183-221 (329)
236 PF06309 Torsin: Torsin; Inte 96.5 0.0077 1.7E-07 42.7 5.1 46 133-178 25-77 (127)
237 KOG0991 Replication factor C, 96.5 0.0053 1.2E-07 48.2 4.7 66 133-200 27-93 (333)
238 COG1763 MobB Molybdopterin-gua 96.5 0.003 6.6E-08 46.8 3.2 25 154-178 2-26 (161)
239 PRK06995 flhF flagellar biosyn 96.4 0.0092 2E-07 52.0 6.6 58 154-213 256-315 (484)
240 cd03238 ABC_UvrA The excision 96.4 0.0026 5.7E-08 48.0 3.0 24 153-176 20-43 (176)
241 cd03229 ABC_Class3 This class 96.4 0.0029 6.2E-08 47.8 3.1 26 153-178 25-50 (178)
242 PRK14960 DNA polymerase III su 96.4 0.0056 1.2E-07 55.0 5.3 46 133-178 15-61 (702)
243 cd02040 NifH NifH gene encodes 96.4 0.0025 5.5E-08 51.2 3.0 24 155-178 2-25 (270)
244 PF07693 KAP_NTPase: KAP famil 96.4 0.0083 1.8E-07 49.5 6.1 73 139-212 2-82 (325)
245 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0033 7.2E-08 46.7 3.4 23 156-178 2-24 (171)
246 PRK14493 putative bifunctional 96.4 0.0027 5.8E-08 51.4 3.0 24 155-178 2-25 (274)
247 TIGR02397 dnaX_nterm DNA polym 96.4 0.006 1.3E-07 51.0 5.3 46 133-178 14-60 (355)
248 COG1136 SalX ABC-type antimicr 96.4 0.003 6.5E-08 49.4 3.1 26 153-178 30-55 (226)
249 cd03261 ABC_Org_Solvent_Resist 96.4 0.0029 6.2E-08 49.9 3.1 26 153-178 25-50 (235)
250 PRK14737 gmk guanylate kinase; 96.4 0.0036 7.8E-08 47.7 3.5 26 153-178 3-28 (186)
251 PRK08099 bifunctional DNA-bind 96.4 0.003 6.6E-08 53.9 3.4 27 152-178 217-243 (399)
252 PRK12323 DNA polymerase III su 96.4 0.016 3.4E-07 52.2 7.9 46 133-178 16-62 (700)
253 cd04155 Arl3 Arl3 subfamily. 96.4 0.0026 5.7E-08 47.3 2.7 25 153-177 13-37 (173)
254 PF10662 PduV-EutP: Ethanolami 96.4 0.0026 5.7E-08 46.2 2.6 24 155-178 2-25 (143)
255 PRK13531 regulatory ATPase Rav 96.4 0.0079 1.7E-07 52.3 5.8 44 133-178 20-63 (498)
256 cd03116 MobB Molybdenum is an 96.4 0.0037 8.1E-08 46.4 3.4 24 155-178 2-25 (159)
257 PRK14490 putative bifunctional 96.4 0.0051 1.1E-07 52.0 4.7 26 153-178 4-29 (369)
258 smart00072 GuKc Guanylate kina 96.4 0.0046 9.9E-08 47.0 4.0 25 154-178 2-26 (184)
259 PLN02200 adenylate kinase fami 96.4 0.0039 8.4E-08 49.3 3.7 26 153-178 42-67 (234)
260 cd03293 ABC_NrtD_SsuB_transpor 96.4 0.0031 6.6E-08 49.3 3.1 26 153-178 29-54 (220)
261 cd03263 ABC_subfamily_A The AB 96.4 0.0031 6.7E-08 49.2 3.1 26 153-178 27-52 (220)
262 COG0237 CoaE Dephospho-CoA kin 96.4 0.0032 6.9E-08 48.6 3.1 24 154-177 2-25 (201)
263 PRK14738 gmk guanylate kinase; 96.4 0.0036 7.8E-08 48.5 3.4 25 153-177 12-36 (206)
264 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0031 6.8E-08 47.7 3.0 27 152-178 23-49 (177)
265 KOG3347 Predicted nucleotide k 96.4 0.0035 7.7E-08 45.6 3.1 25 154-178 7-31 (176)
266 cd03269 ABC_putative_ATPase Th 96.4 0.0032 6.9E-08 48.8 3.1 26 153-178 25-50 (210)
267 TIGR02315 ABC_phnC phosphonate 96.4 0.0031 6.7E-08 50.0 3.1 26 153-178 27-52 (243)
268 TIGR02673 FtsE cell division A 96.4 0.0032 6.9E-08 48.9 3.1 26 153-178 27-52 (214)
269 COG0194 Gmk Guanylate kinase [ 96.4 0.004 8.6E-08 47.0 3.4 25 154-178 4-28 (191)
270 COG0003 ArsA Predicted ATPase 96.4 0.0078 1.7E-07 49.8 5.5 48 154-204 2-49 (322)
271 cd03259 ABC_Carb_Solutes_like 96.4 0.0032 7E-08 48.8 3.1 26 153-178 25-50 (213)
272 PRK13541 cytochrome c biogenes 96.4 0.0033 7.2E-08 48.1 3.1 26 153-178 25-50 (195)
273 PRK05703 flhF flagellar biosyn 96.3 0.0077 1.7E-07 51.8 5.6 25 154-178 221-245 (424)
274 PRK10867 signal recognition pa 96.3 0.019 4.1E-07 49.5 7.9 26 153-178 99-124 (433)
275 cd03297 ABC_ModC_molybdenum_tr 96.3 0.0035 7.6E-08 48.7 3.3 26 152-178 22-47 (214)
276 PRK10584 putative ABC transpor 96.3 0.0033 7.2E-08 49.3 3.2 26 153-178 35-60 (228)
277 cd03256 ABC_PhnC_transporter A 96.3 0.0033 7E-08 49.7 3.1 26 153-178 26-51 (241)
278 PF02562 PhoH: PhoH-like prote 96.3 0.0051 1.1E-07 47.6 4.0 52 138-192 5-56 (205)
279 cd01862 Rab7 Rab7 subfamily. 96.3 0.003 6.5E-08 46.8 2.7 23 156-178 2-24 (172)
280 TIGR02211 LolD_lipo_ex lipopro 96.3 0.0034 7.3E-08 49.0 3.1 26 153-178 30-55 (221)
281 PRK13948 shikimate kinase; Pro 96.3 0.0041 8.9E-08 47.3 3.5 26 153-178 9-34 (182)
282 PF13604 AAA_30: AAA domain; P 96.3 0.0078 1.7E-07 46.3 5.1 36 143-178 7-42 (196)
283 cd03264 ABC_drug_resistance_li 96.3 0.003 6.6E-08 48.9 2.8 23 156-178 27-49 (211)
284 PRK13235 nifH nitrogenase redu 96.3 0.003 6.5E-08 51.1 2.9 24 155-178 2-25 (274)
285 cd04163 Era Era subfamily. Er 96.3 0.0035 7.5E-08 45.7 3.0 25 154-178 3-27 (168)
286 PF13086 AAA_11: AAA domain; P 96.3 0.016 3.4E-07 45.0 6.9 53 156-208 19-75 (236)
287 cd03226 ABC_cobalt_CbiO_domain 96.3 0.0034 7.4E-08 48.4 3.1 26 153-178 25-50 (205)
288 cd04119 RJL RJL (RabJ-Like) su 96.3 0.0033 7.3E-08 46.2 2.9 23 156-178 2-24 (168)
289 cd03260 ABC_PstB_phosphate_tra 96.3 0.0035 7.6E-08 49.1 3.2 26 153-178 25-50 (227)
290 smart00173 RAS Ras subfamily o 96.3 0.0035 7.5E-08 46.1 3.0 23 156-178 2-24 (164)
291 cd03265 ABC_DrrA DrrA is the A 96.3 0.0035 7.6E-08 48.9 3.1 26 153-178 25-50 (220)
292 cd03235 ABC_Metallic_Cations A 96.3 0.0033 7.2E-08 48.7 3.0 26 153-178 24-49 (213)
293 cd03296 ABC_CysA_sulfate_impor 96.3 0.0035 7.5E-08 49.6 3.1 26 153-178 27-52 (239)
294 PRK08116 hypothetical protein; 96.3 0.004 8.8E-08 50.3 3.5 36 155-193 115-150 (268)
295 PF02374 ArsA_ATPase: Anion-tr 96.3 0.0062 1.3E-07 50.2 4.6 23 155-177 2-24 (305)
296 cd03292 ABC_FtsE_transporter F 96.3 0.0036 7.9E-08 48.5 3.1 26 153-178 26-51 (214)
297 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.0036 7.8E-08 49.4 3.1 26 153-178 26-51 (236)
298 cd02026 PRK Phosphoribulokinas 96.3 0.0032 6.9E-08 51.0 2.9 22 156-177 1-22 (273)
299 cd01428 ADK Adenylate kinase ( 96.3 0.0038 8.3E-08 47.5 3.2 22 157-178 2-23 (194)
300 cd02022 DPCK Dephospho-coenzym 96.3 0.0034 7.4E-08 47.5 2.9 21 156-176 1-21 (179)
301 PRK14954 DNA polymerase III su 96.3 0.0061 1.3E-07 54.8 4.8 46 133-178 16-62 (620)
302 PRK13233 nifH nitrogenase redu 96.3 0.0034 7.3E-08 50.8 3.0 24 155-178 3-26 (275)
303 TIGR00959 ffh signal recogniti 96.3 0.022 4.8E-07 49.0 8.0 26 153-178 98-123 (428)
304 PRK08356 hypothetical protein; 96.3 0.0046 1E-07 47.4 3.6 22 154-175 5-26 (195)
305 COG1223 Predicted ATPase (AAA+ 96.3 0.0071 1.5E-07 48.2 4.5 45 134-178 122-175 (368)
306 PRK15177 Vi polysaccharide exp 96.3 0.0037 8.1E-08 48.6 3.1 26 153-178 12-37 (213)
307 PRK13538 cytochrome c biogenes 96.3 0.0039 8.4E-08 48.1 3.1 26 153-178 26-51 (204)
308 PRK06851 hypothetical protein; 96.3 0.22 4.8E-06 42.1 13.7 53 136-194 200-252 (367)
309 PLN02348 phosphoribulokinase 96.3 0.0047 1E-07 52.2 3.8 27 152-178 47-73 (395)
310 cd04159 Arl10_like Arl10-like 96.3 0.0032 7E-08 45.6 2.5 21 157-177 2-22 (159)
311 cd03257 ABC_NikE_OppD_transpor 96.3 0.0037 8.1E-08 48.9 3.0 26 153-178 30-55 (228)
312 cd03224 ABC_TM1139_LivF_branch 96.3 0.0039 8.5E-08 48.6 3.1 26 153-178 25-50 (222)
313 PRK06645 DNA polymerase III su 96.3 0.0068 1.5E-07 53.2 4.9 46 133-178 21-67 (507)
314 PRK04328 hypothetical protein; 96.3 0.011 2.5E-07 47.1 5.8 55 153-213 22-76 (249)
315 TIGR00231 small_GTP small GTP- 96.2 0.0035 7.7E-08 45.1 2.7 23 156-178 3-25 (161)
316 PRK11629 lolD lipoprotein tran 96.2 0.004 8.6E-08 49.1 3.1 26 153-178 34-59 (233)
317 TIGR03608 L_ocin_972_ABC putat 96.2 0.0042 9E-08 47.9 3.1 26 153-178 23-48 (206)
318 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.2 0.0067 1.4E-07 45.4 4.2 34 144-177 5-38 (174)
319 PRK00698 tmk thymidylate kinas 96.2 0.0049 1.1E-07 47.3 3.5 24 155-178 4-27 (205)
320 PRK10247 putative ABC transpor 96.2 0.0042 9E-08 48.7 3.2 26 153-178 32-57 (225)
321 PRK11248 tauB taurine transpor 96.2 0.0041 8.8E-08 49.8 3.1 26 153-178 26-51 (255)
322 TIGR01241 FtsH_fam ATP-depende 96.2 0.008 1.7E-07 52.9 5.2 45 134-178 56-112 (495)
323 cd00154 Rab Rab family. Rab G 96.2 0.0042 9.1E-08 44.9 2.9 22 157-178 3-24 (159)
324 PRK13768 GTPase; Provisional 96.2 0.0081 1.8E-07 48.1 4.8 25 154-178 2-26 (253)
325 cd01130 VirB11-like_ATPase Typ 96.2 0.008 1.7E-07 45.7 4.6 36 142-178 14-49 (186)
326 PRK14721 flhF flagellar biosyn 96.2 0.017 3.7E-07 49.5 7.0 26 153-178 190-215 (420)
327 cd03258 ABC_MetN_methionine_tr 96.2 0.0042 9.2E-08 48.9 3.1 26 153-178 30-55 (233)
328 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.0042 9.1E-08 49.5 3.1 26 153-178 24-49 (246)
329 cd03114 ArgK-like The function 96.2 0.0042 9E-08 45.6 2.9 23 156-178 1-23 (148)
330 PRK13407 bchI magnesium chelat 96.2 0.0071 1.5E-07 50.3 4.5 46 133-178 8-53 (334)
331 smart00175 RAB Rab subfamily o 96.2 0.0039 8.5E-08 45.7 2.8 23 156-178 2-24 (164)
332 cd01878 HflX HflX subfamily. 96.2 0.008 1.7E-07 46.2 4.6 27 152-178 39-65 (204)
333 PRK13231 nitrogenase reductase 96.2 0.0042 9.1E-08 49.9 3.1 24 155-178 3-26 (264)
334 PRK08154 anaerobic benzoate ca 96.2 0.0091 2E-07 49.3 5.1 27 152-178 131-157 (309)
335 PRK03731 aroL shikimate kinase 96.2 0.0049 1.1E-07 46.1 3.3 24 155-178 3-26 (171)
336 cd04138 H_N_K_Ras_like H-Ras/N 96.2 0.0044 9.5E-08 45.2 3.0 23 156-178 3-25 (162)
337 PLN02924 thymidylate kinase 96.2 0.015 3.3E-07 45.5 6.1 54 153-208 15-68 (220)
338 TIGR01184 ntrCD nitrate transp 96.2 0.0044 9.5E-08 48.8 3.1 26 153-178 10-35 (230)
339 cd04113 Rab4 Rab4 subfamily. 96.2 0.0043 9.3E-08 45.5 2.9 23 156-178 2-24 (161)
340 PRK14952 DNA polymerase III su 96.2 0.0077 1.7E-07 53.8 4.9 46 133-178 13-59 (584)
341 TIGR02770 nickel_nikD nickel i 96.2 0.0043 9.3E-08 48.8 3.0 26 153-178 11-36 (230)
342 TIGR03574 selen_PSTK L-seryl-t 96.2 0.0041 8.9E-08 49.6 3.0 23 156-178 1-23 (249)
343 TIGR00017 cmk cytidylate kinas 96.2 0.0051 1.1E-07 48.1 3.4 24 155-178 3-26 (217)
344 cd03301 ABC_MalK_N The N-termi 96.2 0.0046 9.9E-08 47.9 3.2 26 153-178 25-50 (213)
345 cd03218 ABC_YhbG The ABC trans 96.2 0.0045 9.7E-08 48.7 3.1 26 153-178 25-50 (232)
346 cd03219 ABC_Mj1267_LivG_branch 96.2 0.0041 8.8E-08 49.0 2.9 26 153-178 25-50 (236)
347 cd01876 YihA_EngB The YihA (En 96.2 0.0041 8.9E-08 45.5 2.7 19 157-175 2-20 (170)
348 cd01673 dNK Deoxyribonucleosid 96.2 0.0044 9.6E-08 47.2 3.0 23 156-178 1-23 (193)
349 COG4608 AppF ABC-type oligopep 96.2 0.0044 9.5E-08 49.5 3.0 58 153-214 38-100 (268)
350 PRK08691 DNA polymerase III su 96.2 0.0089 1.9E-07 54.1 5.2 46 133-178 16-62 (709)
351 PRK07994 DNA polymerase III su 96.2 0.0077 1.7E-07 54.3 4.8 46 133-178 16-62 (647)
352 cd00876 Ras Ras family. The R 96.2 0.0045 9.7E-08 45.1 2.9 21 157-177 2-22 (160)
353 TIGR01281 DPOR_bchL light-inde 96.2 0.0042 9.2E-08 50.0 2.9 22 156-177 2-23 (268)
354 cd03278 ABC_SMC_barmotin Barmo 96.2 0.0045 9.7E-08 47.6 2.9 21 156-176 24-44 (197)
355 PRK11124 artP arginine transpo 96.2 0.0047 1E-07 48.9 3.1 26 153-178 27-52 (242)
356 PLN02318 phosphoribulokinase/u 96.2 0.0051 1.1E-07 54.6 3.6 27 152-178 63-89 (656)
357 PLN02165 adenylate isopentenyl 96.2 0.0047 1E-07 51.1 3.2 29 150-178 39-67 (334)
358 cd01983 Fer4_NifH The Fer4_Nif 96.2 0.0051 1.1E-07 40.7 2.9 23 156-178 1-23 (99)
359 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.0045 9.8E-08 49.2 3.0 26 153-178 29-54 (254)
360 PRK09111 DNA polymerase III su 96.1 0.0081 1.8E-07 53.9 4.9 46 133-178 24-70 (598)
361 PRK10908 cell division protein 96.1 0.0049 1.1E-07 48.2 3.1 26 153-178 27-52 (222)
362 TIGR01978 sufC FeS assembly AT 96.1 0.0047 1E-07 48.9 3.0 25 153-177 25-49 (243)
363 PRK10416 signal recognition pa 96.1 0.0057 1.2E-07 50.6 3.6 26 153-178 113-138 (318)
364 PRK14532 adenylate kinase; Pro 96.1 0.0051 1.1E-07 46.7 3.1 22 157-178 3-24 (188)
365 cd03295 ABC_OpuCA_Osmoprotecti 96.1 0.0049 1.1E-07 48.9 3.2 26 153-178 26-51 (242)
366 PRK01184 hypothetical protein; 96.1 0.0049 1.1E-07 46.7 3.0 23 155-178 2-24 (184)
367 TIGR00602 rad24 checkpoint pro 96.1 0.0075 1.6E-07 54.3 4.6 46 133-178 84-134 (637)
368 PRK10865 protein disaggregatio 96.1 0.014 3.1E-07 54.6 6.6 46 133-178 568-622 (857)
369 PRK13540 cytochrome c biogenes 96.1 0.0051 1.1E-07 47.3 3.1 26 153-178 26-51 (200)
370 PRK05342 clpX ATP-dependent pr 96.1 0.0093 2E-07 51.1 5.0 46 133-178 71-132 (412)
371 PF00071 Ras: Ras family; Int 96.1 0.0059 1.3E-07 44.8 3.4 22 157-178 2-23 (162)
372 cd03232 ABC_PDR_domain2 The pl 96.1 0.0051 1.1E-07 47.0 3.1 25 153-177 32-56 (192)
373 cd01864 Rab19 Rab19 subfamily. 96.1 0.0048 1E-07 45.5 2.9 24 154-177 3-26 (165)
374 PRK15453 phosphoribulokinase; 96.1 0.0065 1.4E-07 49.1 3.7 27 152-178 3-29 (290)
375 PF05673 DUF815: Protein of un 96.1 0.026 5.6E-07 44.7 7.0 46 133-178 27-76 (249)
376 TIGR01189 ccmA heme ABC export 96.1 0.0053 1.1E-07 47.1 3.2 26 153-178 25-50 (198)
377 PRK11247 ssuB aliphatic sulfon 96.1 0.0051 1.1E-07 49.4 3.1 26 153-178 37-62 (257)
378 cd03246 ABCC_Protease_Secretio 96.1 0.0055 1.2E-07 46.0 3.2 26 153-178 27-52 (173)
379 cd03266 ABC_NatA_sodium_export 96.1 0.0051 1.1E-07 47.8 3.1 26 153-178 30-55 (218)
380 cd03262 ABC_HisP_GlnQ_permease 96.1 0.0052 1.1E-07 47.6 3.1 26 153-178 25-50 (213)
381 PRK13539 cytochrome c biogenes 96.1 0.0052 1.1E-07 47.5 3.1 26 153-178 27-52 (207)
382 cd03268 ABC_BcrA_bacitracin_re 96.1 0.0053 1.1E-07 47.4 3.1 26 153-178 25-50 (208)
383 PRK12723 flagellar biosynthesi 96.1 0.02 4.4E-07 48.6 6.8 59 153-213 173-235 (388)
384 PTZ00088 adenylate kinase 1; P 96.1 0.0053 1.1E-07 48.4 3.1 23 156-178 8-30 (229)
385 PRK14242 phosphate transporter 96.1 0.0052 1.1E-07 49.0 3.2 25 153-177 31-55 (253)
386 TIGR02324 CP_lyasePhnL phospho 96.1 0.0052 1.1E-07 48.1 3.1 26 153-178 33-58 (224)
387 TIGR01243 CDC48 AAA family ATP 96.1 0.0071 1.5E-07 55.8 4.4 45 134-178 179-236 (733)
388 TIGR00101 ureG urease accessor 96.1 0.011 2.3E-07 45.6 4.8 24 155-178 2-25 (199)
389 COG3638 ABC-type phosphate/pho 96.1 0.0054 1.2E-07 48.1 3.1 26 153-178 29-54 (258)
390 PRK09544 znuC high-affinity zi 96.1 0.0053 1.1E-07 49.1 3.1 26 153-178 29-54 (251)
391 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.012 2.5E-07 49.1 5.1 46 133-178 61-112 (358)
392 PRK07940 DNA polymerase III su 96.1 0.011 2.3E-07 50.5 5.1 46 133-178 5-60 (394)
393 PRK14531 adenylate kinase; Pro 96.1 0.0063 1.4E-07 46.2 3.4 24 155-178 3-26 (183)
394 cd00879 Sar1 Sar1 subfamily. 96.1 0.0049 1.1E-07 46.7 2.8 25 153-177 18-42 (190)
395 cd03223 ABCD_peroxisomal_ALDP 96.1 0.0056 1.2E-07 45.7 3.1 26 153-178 26-51 (166)
396 cd00878 Arf_Arl Arf (ADP-ribos 96.1 0.0049 1.1E-07 45.1 2.7 22 157-178 2-23 (158)
397 TIGR02016 BchX chlorophyllide 96.1 0.0049 1.1E-07 50.5 2.9 24 155-178 1-24 (296)
398 TIGR02528 EutP ethanolamine ut 96.1 0.0045 9.8E-08 44.5 2.5 23 156-178 2-24 (142)
399 cd04124 RabL2 RabL2 subfamily. 96.1 0.0054 1.2E-07 45.2 2.9 21 157-177 3-23 (161)
400 PRK14247 phosphate ABC transpo 96.1 0.0054 1.2E-07 48.8 3.1 26 153-178 28-53 (250)
401 PRK14245 phosphate ABC transpo 96.1 0.0055 1.2E-07 48.8 3.1 24 153-176 28-51 (250)
402 TIGR00972 3a0107s01c2 phosphat 96.1 0.0053 1.1E-07 48.8 3.0 26 153-178 26-51 (247)
403 cd03252 ABCC_Hemolysin The ABC 96.1 0.0056 1.2E-07 48.3 3.1 26 153-178 27-52 (237)
404 PRK09183 transposase/IS protei 96.1 0.0061 1.3E-07 49.0 3.4 25 154-178 102-126 (259)
405 cd04160 Arfrp1 Arfrp1 subfamil 96.1 0.0059 1.3E-07 45.0 3.1 21 157-177 2-22 (167)
406 COG3842 PotA ABC-type spermidi 96.1 0.0051 1.1E-07 51.3 3.0 25 153-177 30-54 (352)
407 PRK09435 membrane ATPase/prote 96.0 0.013 2.8E-07 48.7 5.3 36 143-178 43-80 (332)
408 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.006 1.3E-07 44.4 3.0 26 153-178 25-50 (144)
409 TIGR01277 thiQ thiamine ABC tr 96.0 0.0058 1.3E-07 47.4 3.1 26 153-178 23-48 (213)
410 PRK14241 phosphate transporter 96.0 0.0057 1.2E-07 49.0 3.1 26 153-178 29-54 (258)
411 cd03233 ABC_PDR_domain1 The pl 96.0 0.0056 1.2E-07 47.2 3.0 26 153-178 32-57 (202)
412 cd03216 ABC_Carb_Monos_I This 96.0 0.0063 1.4E-07 45.3 3.1 26 153-178 25-50 (163)
413 PRK14250 phosphate ABC transpo 96.0 0.0058 1.3E-07 48.4 3.1 26 153-178 28-53 (241)
414 PRK11300 livG leucine/isoleuci 96.0 0.0058 1.3E-07 48.8 3.1 26 153-178 30-55 (255)
415 cd03214 ABC_Iron-Siderophores_ 96.0 0.0062 1.3E-07 46.0 3.1 26 153-178 24-49 (180)
416 cd03267 ABC_NatA_like Similar 96.0 0.0059 1.3E-07 48.3 3.1 26 153-178 46-71 (236)
417 cd03230 ABC_DR_subfamily_A Thi 96.0 0.0063 1.4E-07 45.7 3.1 26 153-178 25-50 (173)
418 cd03228 ABCC_MRP_Like The MRP 96.0 0.0063 1.4E-07 45.6 3.1 26 153-178 27-52 (171)
419 cd03247 ABCC_cytochrome_bd The 96.0 0.0062 1.3E-07 45.9 3.1 26 153-178 27-52 (178)
420 cd01898 Obg Obg subfamily. Th 96.0 0.0054 1.2E-07 45.3 2.7 21 157-177 3-23 (170)
421 PRK14274 phosphate ABC transpo 96.0 0.0061 1.3E-07 48.8 3.2 25 153-177 37-61 (259)
422 cd03215 ABC_Carb_Monos_II This 96.0 0.0063 1.4E-07 46.1 3.0 26 153-178 25-50 (182)
423 PRK10895 lipopolysaccharide AB 96.0 0.0059 1.3E-07 48.3 3.0 26 153-178 28-53 (241)
424 PRK09493 glnQ glutamine ABC tr 96.0 0.0062 1.3E-07 48.2 3.1 26 153-178 26-51 (240)
425 TIGR01188 drrA daunorubicin re 96.0 0.006 1.3E-07 50.1 3.1 26 153-178 18-43 (302)
426 smart00178 SAR Sar1p-like memb 96.0 0.012 2.6E-07 44.5 4.6 36 142-177 4-40 (184)
427 PRK14239 phosphate transporter 96.0 0.0061 1.3E-07 48.6 3.1 24 153-176 30-53 (252)
428 PRK11264 putative amino-acid A 96.0 0.0062 1.4E-07 48.4 3.2 26 153-178 28-53 (250)
429 PRK10575 iron-hydroxamate tran 96.0 0.0055 1.2E-07 49.3 2.9 26 153-178 36-61 (265)
430 cd03273 ABC_SMC2_euk Eukaryoti 96.0 0.0066 1.4E-07 48.4 3.3 24 153-176 24-47 (251)
431 PHA02530 pseT polynucleotide k 96.0 0.0072 1.6E-07 49.4 3.6 24 155-178 3-26 (300)
432 TIGR03410 urea_trans_UrtE urea 96.0 0.006 1.3E-07 47.9 3.0 26 153-178 25-50 (230)
433 COG3899 Predicted ATPase [Gene 96.0 0.018 3.9E-07 53.9 6.5 44 135-178 2-48 (849)
434 PF00406 ADK: Adenylate kinase 96.0 0.0062 1.3E-07 44.6 2.9 20 159-178 1-20 (151)
435 COG0542 clpA ATP-binding subun 96.0 0.01 2.2E-07 54.3 4.7 45 134-178 171-215 (786)
436 cd04136 Rap_like Rap-like subf 96.0 0.0062 1.4E-07 44.6 2.9 22 156-177 3-24 (163)
437 PRK14256 phosphate ABC transpo 96.0 0.0063 1.4E-07 48.5 3.1 26 153-178 29-54 (252)
438 cd03245 ABCC_bacteriocin_expor 96.0 0.0064 1.4E-07 47.4 3.1 26 153-178 29-54 (220)
439 cd04123 Rab21 Rab21 subfamily. 96.0 0.0064 1.4E-07 44.4 2.9 23 156-178 2-24 (162)
440 cd00157 Rho Rho (Ras homology) 96.0 0.0063 1.4E-07 45.0 2.9 22 157-178 3-24 (171)
441 cd03298 ABC_ThiQ_thiamine_tran 96.0 0.0066 1.4E-07 47.0 3.1 26 153-178 23-48 (211)
442 PRK10744 pstB phosphate transp 96.0 0.0064 1.4E-07 48.8 3.1 25 153-177 38-62 (260)
443 PLN03046 D-glycerate 3-kinase; 96.0 0.0068 1.5E-07 51.7 3.3 26 153-178 211-236 (460)
444 cd04171 SelB SelB subfamily. 96.0 0.0068 1.5E-07 44.4 3.0 21 156-176 2-22 (164)
445 PRK13649 cbiO cobalt transport 96.0 0.0062 1.3E-07 49.4 3.0 26 153-178 32-57 (280)
446 cd03231 ABC_CcmA_heme_exporter 96.0 0.0068 1.5E-07 46.6 3.1 26 153-178 25-50 (201)
447 cd03294 ABC_Pro_Gly_Bertaine T 96.0 0.0065 1.4E-07 49.0 3.1 26 153-178 49-74 (269)
448 PRK14950 DNA polymerase III su 96.0 0.012 2.7E-07 52.8 5.1 46 133-178 16-62 (585)
449 cd02032 Bchl_like This family 96.0 0.0061 1.3E-07 49.0 3.0 23 156-178 2-24 (267)
450 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.0 0.0069 1.5E-07 47.8 3.2 26 153-178 28-53 (238)
451 cd03251 ABCC_MsbA MsbA is an e 95.9 0.0068 1.5E-07 47.7 3.1 26 153-178 27-52 (234)
452 PRK02496 adk adenylate kinase; 95.9 0.0083 1.8E-07 45.4 3.5 23 156-178 3-25 (184)
453 cd01860 Rab5_related Rab5-rela 95.9 0.0065 1.4E-07 44.6 2.9 23 156-178 3-25 (163)
454 PRK11701 phnK phosphonate C-P 95.9 0.0067 1.4E-07 48.6 3.1 26 153-178 31-56 (258)
455 TIGR00455 apsK adenylylsulfate 95.9 0.0082 1.8E-07 45.5 3.5 27 152-178 16-42 (184)
456 PRK15056 manganese/iron transp 95.9 0.0065 1.4E-07 49.1 3.1 26 153-178 32-57 (272)
457 TIGR00750 lao LAO/AO transport 95.9 0.016 3.4E-07 47.6 5.4 27 152-178 32-58 (300)
458 PRK07952 DNA replication prote 95.9 0.0076 1.7E-07 48.0 3.4 49 142-193 85-135 (244)
459 PRK11022 dppD dipeptide transp 95.9 0.0065 1.4E-07 50.5 3.1 26 153-178 32-57 (326)
460 PRK10619 histidine/lysine/argi 95.9 0.0068 1.5E-07 48.5 3.1 26 153-178 30-55 (257)
461 PRK06526 transposase; Provisio 95.9 0.007 1.5E-07 48.5 3.2 26 153-178 97-122 (254)
462 PRK13645 cbiO cobalt transport 95.9 0.0066 1.4E-07 49.5 3.1 26 153-178 36-61 (289)
463 PRK11831 putative ABC transpor 95.9 0.0066 1.4E-07 49.0 3.1 26 153-178 32-57 (269)
464 PF01078 Mg_chelatase: Magnesi 95.9 0.017 3.7E-07 44.6 5.1 43 133-177 3-45 (206)
465 PRK13638 cbiO cobalt transport 95.9 0.0063 1.4E-07 49.1 2.9 26 153-178 26-51 (271)
466 PRK14238 phosphate transporter 95.9 0.0069 1.5E-07 48.9 3.2 26 153-178 49-74 (271)
467 PRK00454 engB GTP-binding prot 95.9 0.0084 1.8E-07 45.5 3.5 26 152-177 22-47 (196)
468 PRK13185 chlL protochlorophyll 95.9 0.0069 1.5E-07 48.8 3.1 24 155-178 3-26 (270)
469 cd04101 RabL4 RabL4 (Rab-like4 95.9 0.0064 1.4E-07 44.7 2.7 21 156-176 2-22 (164)
470 TIGR03005 ectoine_ehuA ectoine 95.9 0.0068 1.5E-07 48.3 3.1 26 153-178 25-50 (252)
471 cd04140 ARHI_like ARHI subfami 95.9 0.0069 1.5E-07 44.8 2.9 22 156-177 3-24 (165)
472 PF02367 UPF0079: Uncharacteri 95.9 0.013 2.9E-07 41.4 4.2 27 152-178 13-39 (123)
473 PRK13973 thymidylate kinase; P 95.9 0.027 5.9E-07 43.8 6.4 24 155-178 4-27 (213)
474 PRK14267 phosphate ABC transpo 95.9 0.007 1.5E-07 48.3 3.1 26 153-178 29-54 (253)
475 PRK14262 phosphate ABC transpo 95.9 0.0071 1.5E-07 48.2 3.1 25 153-177 28-52 (250)
476 cd01129 PulE-GspE PulE/GspE Th 95.9 0.014 2.9E-07 47.1 4.8 43 136-178 62-104 (264)
477 cd03290 ABCC_SUR1_N The SUR do 95.9 0.0073 1.6E-07 47.0 3.1 26 153-178 26-51 (218)
478 PRK14235 phosphate transporter 95.9 0.0072 1.6E-07 48.7 3.2 26 153-178 44-69 (267)
479 PRK14528 adenylate kinase; Pro 95.9 0.0084 1.8E-07 45.7 3.4 24 155-178 2-25 (186)
480 PF13245 AAA_19: Part of AAA d 95.9 0.022 4.8E-07 36.7 4.8 25 153-177 9-34 (76)
481 cd03253 ABCC_ATM1_transporter 95.9 0.0073 1.6E-07 47.6 3.1 26 153-178 26-51 (236)
482 TIGR03878 thermo_KaiC_2 KaiC d 95.9 0.026 5.7E-07 45.3 6.4 40 153-195 35-74 (259)
483 PRK14088 dnaA chromosomal repl 95.9 0.018 3.8E-07 49.9 5.7 59 133-193 106-168 (440)
484 TIGR01351 adk adenylate kinase 95.9 0.0076 1.7E-07 46.7 3.2 22 157-178 2-23 (210)
485 cd04177 RSR1 RSR1 subgroup. R 95.9 0.0073 1.6E-07 44.8 3.0 23 156-178 3-25 (168)
486 PF00308 Bac_DnaA: Bacterial d 95.9 0.0097 2.1E-07 46.6 3.8 46 133-178 9-58 (219)
487 cd03240 ABC_Rad50 The catalyti 95.9 0.0074 1.6E-07 46.7 3.1 21 155-175 23-43 (204)
488 PRK07429 phosphoribulokinase; 95.9 0.0089 1.9E-07 49.7 3.7 27 152-178 6-32 (327)
489 PRK14259 phosphate ABC transpo 95.9 0.0072 1.6E-07 48.8 3.1 25 153-177 38-62 (269)
490 cd03274 ABC_SMC4_euk Eukaryoti 95.9 0.0074 1.6E-07 47.0 3.0 22 154-175 25-46 (212)
491 PRK13543 cytochrome c biogenes 95.9 0.0076 1.6E-07 46.9 3.1 26 153-178 36-61 (214)
492 PRK14273 phosphate ABC transpo 95.9 0.0075 1.6E-07 48.2 3.1 26 153-178 32-57 (254)
493 PRK14730 coaE dephospho-CoA ki 95.9 0.0087 1.9E-07 46.0 3.4 23 155-177 2-24 (195)
494 PRK14243 phosphate transporter 95.9 0.0075 1.6E-07 48.5 3.2 24 153-176 35-58 (264)
495 PRK06305 DNA polymerase III su 95.9 0.015 3.3E-07 50.4 5.3 46 133-178 17-63 (451)
496 CHL00131 ycf16 sulfate ABC tra 95.9 0.0071 1.5E-07 48.2 3.0 25 153-177 32-56 (252)
497 cd03234 ABCG_White The White s 95.9 0.0079 1.7E-07 47.1 3.2 26 153-178 32-57 (226)
498 COG1222 RPT1 ATP-dependent 26S 95.9 0.014 3E-07 48.5 4.6 44 135-178 153-209 (406)
499 cd03283 ABC_MutS-like MutS-lik 95.9 0.0073 1.6E-07 46.5 3.0 23 155-177 26-48 (199)
500 PRK14237 phosphate transporter 95.9 0.0077 1.7E-07 48.6 3.2 26 153-178 45-70 (267)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.96 E-value=7.5e-28 Score=218.65 Aligned_cols=202 Identities=38% Similarity=0.684 Sum_probs=165.0
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-----
Q 041535 3 QSLLHICYLQDNLKDLRRESQKLIEERNDVRIRVIIAEQQQMKRLERVQGWFSRVQDVLYEVDRLTLESNREDVK----- 77 (216)
Q Consensus 3 ~~~~~~~~~~~~~~~L~~~l~~l~~~l~~i~~~~~~ae~~~~~~~~~~~~Wl~~lr~~~~d~ed~ld~~~~~~~~----- 77 (216)
+++..+.+.+.++..|++++..|+.++++ ++.++.. ...+..|.+.++++.|+++|+++.+......
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~ 89 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALED-------LDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND 89 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 56677888888999999999999999876 5554443 4678899999999999999999988654322
Q ss_pred -----------hhhcCCCCCCCchhhhHhHHHHHHHHHHHhHHhcCCCccccc-CCCCCCCccCCCCCCc-cccHHHHHH
Q 041535 78 -----------LCLGGLCTRSCKSNYKFGRKVFRTLREVQSLSLEGDFKEVAQ-PAAVNPVDERPLPTSV-VGLQSTFER 144 (216)
Q Consensus 78 -----------~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-vG~~~~~~~ 144 (216)
.|..++|...+...+.+++++....+.++.+..++.|...+. ..+......+|..+.. ||.+..+++
T Consensus 90 ~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~k 169 (889)
T KOG4658|consen 90 LLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEK 169 (889)
T ss_pred HhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHH
Confidence 234456666777778899999999999999988776665553 2223333444444444 999999999
Q ss_pred HHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhccc-CCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 145 VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLV-SPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 145 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
+++.|.+++..++||+||||+||||||+.|||+. . ++.+||.+|||+||++|+..+|+.+|++.++..
T Consensus 170 l~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~-~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 170 LWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKF-DEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred HHHHhccCCCCEEEEECCCcccHHHHHHHHhccc-chhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 9999999888999999999999999999999999 6 999999999999999999999999999999874
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.62 E-value=1.4e-15 Score=123.48 Aligned_cols=76 Identities=33% Similarity=0.606 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 041535 138 LQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLFN 214 (216)
Q Consensus 138 ~~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 214 (216)
||.++++|.+.|.+ ++.++|+|+||||+||||||..+|++. .++.+|+.++||.+++.++...++..|+.+++.+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-ccccccccccccccccccccccccccccccccccc
Confidence 68899999999998 789999999999999999999999986 57899999999999999999999999999999873
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.03 E-value=3.9e-10 Score=107.39 Aligned_cols=57 Identities=21% Similarity=0.540 Sum_probs=50.3
Q ss_pred CCccccHHHHHHHHHHhc--cCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEE
Q 041535 133 TSVVGLQSTFERVWSCVM--EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV 192 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~ 192 (216)
+.+||++...+++..+|. .++.++|+||||||+||||||+.+|+.. ..+|+..+|+.
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~ 242 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFID 242 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEee
Confidence 458999999999999885 3579999999999999999999999976 78899888774
No 4
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.83 E-value=6.5e-09 Score=82.66 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=47.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCc--cCHHHHHHHH
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD--LQLEKIQECV 206 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~--~~~~~i~~~i 206 (216)
..-..++|+|++|+|||||++.+|++. .. .+|+.++|+++++. +++.++++.|
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHh
Confidence 356689999999999999999999987 43 49999999998887 8999999998
No 5
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.74 E-value=1.5e-08 Score=84.63 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=50.0
Q ss_pred HHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc--CHHHHHHHHH
Q 041535 145 VWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL--QLEKIQECVA 207 (216)
Q Consensus 145 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~i~ 207 (216)
+++++.. ..-....|+|++|+||||||+.||+.. .. .+|++++||++++.+ .+.+++++|.
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 4444433 355678899999999999999999988 43 499999999999998 8888888875
No 6
>PTZ00202 tuzin; Provisional
Probab=98.57 E-value=6.6e-07 Score=75.76 Aligned_cols=75 Identities=21% Similarity=0.145 Sum_probs=58.9
Q ss_pred CCCccccHHHHHHHHHHhccC---CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 041535 132 PTSVVGLQSTFERVWSCVMED---TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAK 208 (216)
Q Consensus 132 ~~~~vG~~~~~~~l~~~L~~~---~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 208 (216)
.+.++||+.+...+...|.+. ..+++.|.|++|+|||||++.+.... . ..+++.-+. +..++++.|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~------~~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G------MPAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C------ceEEEECCC--CHHHHHHHHHH
Confidence 467899999999999988642 35699999999999999999999765 2 113333333 77999999999
Q ss_pred HcCCCCC
Q 041535 209 KIGLFNE 215 (216)
Q Consensus 209 ~l~~~~~ 215 (216)
+||++..
T Consensus 332 ALGV~p~ 338 (550)
T PTZ00202 332 ALGVPNV 338 (550)
T ss_pred HcCCCCc
Confidence 9998653
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.56 E-value=4.2e-07 Score=77.22 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=62.4
Q ss_pred CCCccccHHHHHHHHHHhcc----CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHH
Q 041535 132 PTSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 207 (216)
Q Consensus 132 ~~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 207 (216)
++.++||+++.++|...|.+ .....+-|+|++|+|||++++.++++. ......-..++|......+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45689999999999998843 344567899999999999999999987 3222233566777777778888999999
Q ss_pred HHcCC
Q 041535 208 KKIGL 212 (216)
Q Consensus 208 ~~l~~ 212 (216)
++++.
T Consensus 108 ~~l~~ 112 (394)
T PRK00411 108 RQLFG 112 (394)
T ss_pred HHhcC
Confidence 98864
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.51 E-value=6.2e-07 Score=75.41 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=61.0
Q ss_pred CCCccccHHHHHHHHHHhcc----CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC---cEEEEEEeCCccCHHHHHH
Q 041535 132 PTSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF---DFVIWVVVSKDLQLEKIQE 204 (216)
Q Consensus 132 ~~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F---~~~~wv~vs~~~~~~~i~~ 204 (216)
++.++||+.+.++|...|.+ .....+-|+|++|+|||++++.+++......... -..+|+......+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 35689999999999999864 3456789999999999999999998751111111 1456777777778888999
Q ss_pred HHHHHc
Q 041535 205 CVAKKI 210 (216)
Q Consensus 205 ~i~~~l 210 (216)
.|++++
T Consensus 94 ~i~~~l 99 (365)
T TIGR02928 94 ELANQL 99 (365)
T ss_pred HHHHHH
Confidence 999988
No 9
>PRK08118 topology modulation protein; Reviewed
Probab=98.47 E-value=1e-07 Score=71.50 Aligned_cols=52 Identities=35% Similarity=0.562 Sum_probs=39.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcccCC-CCCcEEE----EEEeCCccCHHHHHHHHHH
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKFLVSP-NHFDFVI----WVVVSKDLQLEKIQECVAK 208 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~-~~F~~~~----wv~vs~~~~~~~i~~~i~~ 208 (216)
..|.|+|++|+||||||+.+++.. ... -+||..+ |..+++. ....++++++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~~ 58 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKPNWEGVPKE-EQITVQNELVK 58 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcCCCHH-HHHHHHHHHhc
Confidence 358999999999999999999988 544 5688888 6666554 45555666554
No 10
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.47 E-value=1.4e-07 Score=71.31 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHHHhc---cCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCc-----cCHHHHHHHH
Q 041535 135 VVGLQSTFERVWSCVM---EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-----LQLEKIQECV 206 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~-----~~~~~i~~~i 206 (216)
++||+++.+++...|. ....+.+-|+|.+|+|||+|++.++... .....+ .+.+.+... .+...+++++
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL-AERGGY--VISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH-HHHT----EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH-HhcCCE--EEEEEEeccccchhhHHHHHHHHH
Confidence 6899999999999993 3468999999999999999999999988 333223 222222222 1235666666
Q ss_pred HHHc
Q 041535 207 AKKI 210 (216)
Q Consensus 207 ~~~l 210 (216)
+.++
T Consensus 79 ~~~~ 82 (185)
T PF13191_consen 79 IDQL 82 (185)
T ss_dssp S---
T ss_pred HHHh
Confidence 6553
No 11
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.41 E-value=6.4e-07 Score=75.23 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=47.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCc--cCHHHHHHHHH
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD--LQLEKIQECVA 207 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~--~~~~~i~~~i~ 207 (216)
..-..++|+|.+|+|||||++.+++.. . ..+|+..+||.+++. .++.++++.|+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIl 221 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVK 221 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhh
Confidence 356689999999999999999999987 3 348999999999977 79999999983
No 12
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.35 E-value=3.4e-06 Score=71.97 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=57.7
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 204 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 204 (216)
.++++.+...+.+...|.. .+.|.++|++|+|||++|+.+.+.. .....|+.+.||++++.++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 3468889999999998875 4567789999999999999999987 5556788999999999988877653
No 13
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=5e-06 Score=59.76 Aligned_cols=61 Identities=26% Similarity=0.268 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCH
Q 041535 136 VGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 199 (216)
Q Consensus 136 vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~ 199 (216)
.|++.....+...+.......+-|+|.+|+|||||++.+++.. . ..-..++++..++....
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEG 61 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhh
Confidence 3678888889888887777889999999999999999999987 2 22234666766655443
No 14
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.24 E-value=1.3e-06 Score=62.30 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=45.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccC--CCCCcEEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVS--PNHFDFVIWVVVSKDLQLEKIQECVAKKIGLFNE 215 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v--~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 215 (216)
-+.+.|+|.+|+|||++++.+.+..... ...-..++|+.++...+...+...|+.+++.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 67 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK 67 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc
Confidence 4678999999999999999998876100 0013456799999998999999999999998754
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.20 E-value=1.9e-06 Score=67.33 Aligned_cols=44 Identities=27% Similarity=0.417 Sum_probs=37.7
Q ss_pred ccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 135 VVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++||+.+.++|.+++..+....+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 58999999999999988778999999999999999999999976
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.15 E-value=2e-05 Score=63.37 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=44.6
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 041535 151 EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLFN 214 (216)
Q Consensus 151 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 214 (216)
.....++.|+|++|+|||||++.+++.. .. ..+ ..+|+ +....+..+++..|+..+|++.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~ 99 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLET 99 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCC
Confidence 3456689999999999999999999987 32 221 23343 3345688899999999998864
No 17
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.02 E-value=1e-05 Score=62.86 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=34.4
Q ss_pred CCccccHHHHHHHHHHhc-----cCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC
Q 041535 133 TSVVGLQSTFERVWSCVM-----EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF 185 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F 185 (216)
.+++|.+.-++.+.-++. ++.+.-+-.||++|+||||||..|.+.. ...|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--E
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCe
Confidence 458999988877654443 2467888999999999999999999987 5555
No 18
>PRK07261 topology modulation protein; Provisional
Probab=97.88 E-value=3.3e-05 Score=58.14 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=34.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEEeCCccCHHHHHHHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKFLVSP-NHFDFVIWVVVSKDLQLEKIQECVA 207 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~~~v~-~~F~~~~wv~vs~~~~~~~i~~~i~ 207 (216)
.|.|+|++|+||||||+.+.... ... -+.|...|-......+..++...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 53 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQPNWQERDDDDMIADIS 53 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEeccccccCCHHHHHHHHH
Confidence 58999999999999999998765 322 2466667754333444445544443
No 19
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00085 Score=60.04 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=42.0
Q ss_pred CccccHHHHHHHHHHhcc------CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC
Q 041535 134 SVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF 185 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F 185 (216)
+-.|+++-++++++++-- -+-++++.+|++|||||.+++.|.... ...|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF 466 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF 466 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce
Confidence 348999999999998842 378899999999999999999999977 4555
No 20
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.86 E-value=1.9e-05 Score=64.77 Aligned_cols=46 Identities=28% Similarity=0.434 Sum_probs=39.1
Q ss_pred CCccccHHHHHHHHHHhcc-----CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|++..++.|..++.. .....+-++|++|+|||+||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999888862 345668899999999999999999876
No 21
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.86 E-value=1.6e-05 Score=55.91 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
||.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 22
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.85 E-value=4.5e-05 Score=65.37 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=38.4
Q ss_pred CCccccHHHHHH---HHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFER---VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~---l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+.. +.+++.......+-++|++|+||||||+.+.+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 347888877655 7777777777788899999999999999999876
No 23
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.80 E-value=0.00014 Score=60.44 Aligned_cols=75 Identities=25% Similarity=0.326 Sum_probs=64.2
Q ss_pred CCCccccHHHHHHHHHHhccCC---ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 041535 132 PTSVVGLQSTFERVWSCVMEDT---IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAK 208 (216)
Q Consensus 132 ~~~~vG~~~~~~~l~~~L~~~~---~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 208 (216)
++.+.+|+.+...+..++.+.. ++.+-|+|-.|.|||.+.+.+++.. .. ..+|+++-.+|+..-++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n~-----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-NL-----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-CC-----cceeeehHHhccHHHHHHHHHH
Confidence 4678899999999999997653 3455789999999999999999987 32 4599999999999999999999
Q ss_pred HcCC
Q 041535 209 KIGL 212 (216)
Q Consensus 209 ~l~~ 212 (216)
+++.
T Consensus 79 ~~~~ 82 (438)
T KOG2543|consen 79 KSQL 82 (438)
T ss_pred Hhcc
Confidence 9863
No 24
>PF05729 NACHT: NACHT domain
Probab=97.74 E-value=6.5e-05 Score=55.48 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcccCCCC----CcEEEEEEeCCccCH
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKFLVSPNH----FDFVIWVVVSKDLQL 199 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~----F~~~~wv~vs~~~~~ 199 (216)
+++.|+|.+|+||||+++.+..+. ..... |...+|++.+.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhc
Confidence 578999999999999999999887 33332 557778877665443
No 25
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00022 Score=60.00 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=62.9
Q ss_pred CCccccHHHHHHHHHHhcc----CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAK 208 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 208 (216)
..+.+|+.+.+++...|.. +...-+-|+|..|+|||+.++.|...........+ .+.|..-...++..++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4488999999999988864 33444999999999999999999998832222233 788888888899999999999
Q ss_pred HcC
Q 041535 209 KIG 211 (216)
Q Consensus 209 ~l~ 211 (216)
+++
T Consensus 96 ~~~ 98 (366)
T COG1474 96 KLG 98 (366)
T ss_pred HcC
Confidence 885
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.73 E-value=7.4e-05 Score=62.09 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=39.0
Q ss_pred CCccccHHHHHHHHHHhcc-----CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|++..++.+..++.. .....+-++|++|+||||||+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 4589999999998877752 346678899999999999999999986
No 27
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.69 E-value=0.00015 Score=60.43 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=45.3
Q ss_pred CccccHHHHHHHHHHhcc------CCceEEEEEeCCCCcHHHHHHHHHHhcccC-----CCCCcEEEE
Q 041535 134 SVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKFLVS-----PNHFDFVIW 190 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v-----~~~F~~~~w 190 (216)
+++|.++.++++++++.. ...+++.++|++|+||||||+.+.+.. .. .+.|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l-~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL-EEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH-hhhcccccCceEEEEe
Confidence 689999999999999964 256899999999999999999998877 22 224555566
No 28
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.68 E-value=0.0019 Score=58.17 Aligned_cols=61 Identities=25% Similarity=0.232 Sum_probs=46.4
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCc---EEEEEEeC
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD---FVIWVVVS 194 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~---~~~wv~vs 194 (216)
+.++|.+.....+.+.+.......+.|+|++|+||||||+.+++.. +....+. ..-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEe
Confidence 4578999998888888876667789999999999999999999876 3333332 23466554
No 29
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.63 E-value=9.7e-05 Score=57.81 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCC
Q 041535 138 LQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 195 (216)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 195 (216)
.+...+.+.+++.......+-|+|..|+|||+||+.+++.. .......+++.++.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHH
Confidence 45567777777666677889999999999999999999876 22333445555443
No 30
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.62 E-value=0.00012 Score=60.67 Aligned_cols=48 Identities=27% Similarity=0.271 Sum_probs=35.1
Q ss_pred HHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc
Q 041535 145 VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL 197 (216)
Q Consensus 145 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~ 197 (216)
|.+++..+.+.-+-.||++|+||||||+.+.+.. +... ..+|..|..-
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~ 200 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATN 200 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccc
Confidence 4444556788899999999999999999999987 3322 3455555543
No 31
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0019 Score=57.91 Aligned_cols=50 Identities=30% Similarity=0.345 Sum_probs=42.2
Q ss_pred CCccccHHHHHHHHHHhcc------CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC
Q 041535 133 TSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF 185 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F 185 (216)
.+-+|.++.+++|++.|-- -.-.+++.||++|+|||.|++.|.... ...|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE
Confidence 3448999999999999842 255799999999999999999999977 6666
No 32
>PRK06696 uridine kinase; Validated
Probab=97.56 E-value=0.00017 Score=56.66 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHhcc---CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 138 LQSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 138 ~~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.+-+++|.+.+.. +...+|+|.|.+|+||||||+.+....
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566777777753 578899999999999999999998876
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.0002 Score=59.92 Aligned_cols=48 Identities=29% Similarity=0.368 Sum_probs=35.6
Q ss_pred ccccHHHH---HHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC
Q 041535 135 VVGLQSTF---ERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF 185 (216)
Q Consensus 135 ~vG~~~~~---~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F 185 (216)
++|.+.-+ .-|-+++..+.+.-.-.||++|+||||||+.|-... ...|
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f 76 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF 76 (436)
T ss_pred hcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce
Confidence 56655332 334555557788888999999999999999998866 4555
No 34
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.50 E-value=0.00014 Score=67.49 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=40.2
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++||+.+.+.+++.|......-+-++|.+|+|||++|+.+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999987666666799999999999999987765
No 35
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.45 E-value=0.0002 Score=59.48 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=40.3
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++..++.+.+++..+....+-++|+.|+||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887776678899999999999999998865
No 36
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.45 E-value=0.0032 Score=58.28 Aligned_cols=46 Identities=30% Similarity=0.334 Sum_probs=37.9
Q ss_pred CCccccHHHHHHHHHHhcc------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+.+++.. ....++.++|++|+|||+||+.+.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4478999999998886642 244589999999999999999999876
No 37
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.44 E-value=0.00019 Score=63.14 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=40.2
Q ss_pred CccccHHHHHHHHHHhc------cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVM------EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+++|.++.++++++.|. +..-+++.++|+.|+||||||+.+..-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 46899999999999993 4567899999999999999999998876
No 38
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.44 E-value=0.00075 Score=55.53 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=40.7
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|++..++.+..++.......+-++|..|+||||+++.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999987777778999999999999999999875
No 39
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.44 E-value=0.00013 Score=55.89 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
||+|.|.+|+||||||+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998877
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.43 E-value=0.00052 Score=63.16 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCCccccHHHHHHHHHHhcc----C-CceEEEEEeCCCCcHHHHHHHHHHhcccC--CCCCc--EEEEEEeCCccCHHHH
Q 041535 132 PTSVVGLQSTFERVWSCVME----D-TIGIVGLYGMGGVGKTTLLTQINNKFLVS--PNHFD--FVIWVVVSKDLQLEKI 202 (216)
Q Consensus 132 ~~~~vG~~~~~~~l~~~L~~----~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~v--~~~F~--~~~wv~vs~~~~~~~i 202 (216)
++.++||+++.++|...|.+ . .-.++-|+|++|+|||+.++.|....... +..+. ..++|....-.++..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45678999999999988864 2 33577899999999999999998765211 11222 2456666666678888
Q ss_pred HHHHHHHc
Q 041535 203 QECVAKKI 210 (216)
Q Consensus 203 ~~~i~~~l 210 (216)
...|+.+|
T Consensus 834 YqvI~qqL 841 (1164)
T PTZ00112 834 YQVLYKQL 841 (1164)
T ss_pred HHHHHHHH
Confidence 88888887
No 41
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.42 E-value=0.00015 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 041535 157 VGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~ 177 (216)
|.|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998877
No 42
>PTZ00301 uridine kinase; Provisional
Probab=97.42 E-value=0.00022 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999887654
No 43
>PRK06547 hypothetical protein; Provisional
Probab=97.42 E-value=0.00029 Score=53.02 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=28.2
Q ss_pred HHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 145 VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 145 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+...+......+|+|.|+.|+||||||+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344556788999999999999999999998865
No 44
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.00095 Score=55.11 Aligned_cols=79 Identities=15% Similarity=0.304 Sum_probs=57.8
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhcc---cCCCCCcEEEEEE-eCCccCHHHHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKFL---VSPNHFDFVIWVV-VSKDLQLEKIQECVA 207 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~---~v~~~F~~~~wv~-vs~~~~~~~i~~~i~ 207 (216)
.+++|.+..++.+.+.+..+.+ ..+-++|+.|+||||||+.++.... ....|+|...|.. -++....+. .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 3578999999999999987654 5668999999999999999988541 2346788888876 455566666 44555
Q ss_pred HHcCC
Q 041535 208 KKIGL 212 (216)
Q Consensus 208 ~~l~~ 212 (216)
+.+..
T Consensus 83 ~~~~~ 87 (313)
T PRK05564 83 EEVNK 87 (313)
T ss_pred HHHhc
Confidence 55443
No 45
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.41 E-value=0.00017 Score=55.86 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999865
No 46
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00022 Score=52.47 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-|.|.||+|+|||||++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999887
No 47
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.41 E-value=0.00022 Score=66.30 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=40.8
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++||+.++.++++.|......-+-++|.+|+||||||+.+....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988776677799999999999999998865
No 48
>PRK08233 hypothetical protein; Provisional
Probab=97.39 E-value=0.00018 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999876
No 49
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.38 E-value=0.00026 Score=64.98 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=40.3
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++||+.+.+++++.|......-+-++|.+|+|||++|+.+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999987766667799999999999999998875
No 50
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.38 E-value=0.00017 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|+|+|++|+|||||++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999865
No 51
>PF13173 AAA_14: AAA domain
Probab=97.36 E-value=0.00036 Score=49.78 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=32.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccC
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQ 198 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~ 198 (216)
-+++.|.|+.|+|||||++.++.+. . .....+++...+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHH
Confidence 4689999999999999999999887 2 445667777766544
No 52
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.35 E-value=0.00028 Score=64.34 Aligned_cols=49 Identities=37% Similarity=0.527 Sum_probs=38.6
Q ss_pred CccccHHHHH---HHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC
Q 041535 134 SVVGLQSTFE---RVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF 185 (216)
Q Consensus 134 ~~vG~~~~~~---~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F 185 (216)
+++|.+..+. .+.+.+..+....+-++|++|+||||||+.+++.. ..+|
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f 80 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHF 80 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcc
Confidence 4688887664 46666666777778899999999999999999876 4455
No 53
>PLN03025 replication factor C subunit; Provisional
Probab=97.35 E-value=0.00093 Score=55.33 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=38.8
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.++.+..|..++..+...-+-++|+.|+||||+|+.+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3478988888888888777766667799999999999999998875
No 54
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.34 E-value=0.00036 Score=54.99 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=24.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+++|.|..|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999988766
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.00036 Score=55.99 Aligned_cols=46 Identities=28% Similarity=0.431 Sum_probs=38.7
Q ss_pred CCccccHHHHHHHHHHhcc-----CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.++-++++-=.+.. +.+--+-++|++|+||||||..|.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 3479999888887666643 578889999999999999999999977
No 56
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.32 E-value=0.00065 Score=54.25 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=41.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEE---------eCCccCHHHH--HHHHHHHcCCCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV---------VSKDLQLEKI--QECVAKKIGLFNE 215 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~---------vs~~~~~~~i--~~~i~~~l~~~~~ 215 (216)
....|-++||+|+||||..|.++.+. ...+.+-.-|. ..-+.|+++. .++++++.++.++
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl---~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL---HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH---hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 56788899999999999999999988 33333222222 2333455554 6788888888765
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.31 E-value=0.00035 Score=65.16 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=40.6
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++||+.++.++++.|......-+-++|.+|+||||||+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999988766677799999999999999988865
No 58
>PHA00729 NTP-binding motif containing protein
Probab=97.31 E-value=0.00042 Score=54.23 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=29.2
Q ss_pred HHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 143 ERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 143 ~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555666677789999999999999999998864
No 59
>PRK07667 uridine kinase; Provisional
Probab=97.30 E-value=0.00043 Score=53.09 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=29.2
Q ss_pred HHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 142 FERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 142 ~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+.+.+.+.. .+..+|+|-|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 356899999999999999999998865
No 60
>PRK04195 replication factor C large subunit; Provisional
Probab=97.28 E-value=0.0003 Score=61.55 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=39.9
Q ss_pred CCccccHHHHHHHHHHhccC----CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMED----TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.+.+|+... ..+.+-|+|++|+||||+|+.+.+..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44899999999999998642 27889999999999999999999976
No 61
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.28 E-value=0.00078 Score=52.14 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=38.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 204 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 204 (216)
.-+++-|+|.+|+|||+|+.++.... ......++|+.... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 46799999999999999999987765 23457889999876 66666554
No 62
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.28 E-value=0.00036 Score=52.58 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=28.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEE
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWV 191 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv 191 (216)
...+|.+.|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45689999999999999999999987 3445555554
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.26 E-value=0.0005 Score=58.01 Aligned_cols=46 Identities=26% Similarity=0.339 Sum_probs=37.7
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+.|++..++++.+.+.- ...+-+-++|++|+|||+||+.+++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 3478999999999887632 134568899999999999999999976
No 64
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.26 E-value=0.0035 Score=57.93 Aligned_cols=47 Identities=30% Similarity=0.297 Sum_probs=39.6
Q ss_pred CCCccccHHHHHHHHHHhcc------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 132 PTSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 132 ~~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+...+|.+..++.++++|.- ....++.++|++|+||||+++.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999999988852 245689999999999999999999865
No 65
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.26 E-value=0.00076 Score=51.90 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=38.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeC-CccCHHHHHHHHHHHcCCC
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS-KDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~ 213 (216)
++||.+||+.|+||||.+-++.... ..+ -..+..|+.. ......+=++..++.++++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4799999999999999998888777 322 3345556542 2234455577777777654
No 66
>PRK06762 hypothetical protein; Provisional
Probab=97.25 E-value=0.00031 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 67
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.22 E-value=0.00037 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|-++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998765
No 68
>PRK08727 hypothetical protein; Validated
Probab=97.22 E-value=0.00099 Score=52.67 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=39.0
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCC
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 195 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 195 (216)
+.++|-......+.....+....-+.|+|..|+|||+|++.+++.. .......+++++.+
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~---~~~~~~~~y~~~~~ 79 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA---EQAGRSSAYLPLQA 79 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEeHHH
Confidence 3345555445444444434444569999999999999999999876 22333555666543
No 69
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.20 E-value=0.0035 Score=51.04 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=49.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCC----CcEEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH----FDFVIWVVVSKDLQLEKIQECVAKKIGLFN 214 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 214 (216)
...-+-|||..|.|||++++...... ..... --+++-|.+...++...+...|+.++|.|-
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 45568899999999999999998766 22111 115778889999999999999999999875
No 70
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.20 E-value=0.0006 Score=54.80 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=32.6
Q ss_pred CccccHHHHHHHHHHhc---------------cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVM---------------EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~---------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..++.+.+... .....-+-++|++|+||||+|+.+.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 36888877766654321 0245567789999999999999997754
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.19 E-value=0.00057 Score=63.79 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=40.1
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++||+.++.+++..|......-+-++|.+|+|||+||..+..+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3479999999999999987766666789999999999999988765
No 72
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.18 E-value=0.0006 Score=58.03 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=37.7
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.+.|++..++++.+.+.- ...+-|-++|++|+|||+||+.+++..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 3478999999998887632 245668899999999999999999876
No 73
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.18 E-value=0.00054 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+.|+|++|+||||+++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 578999999999999999999877
No 74
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.18 E-value=0.0003 Score=54.07 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|+|.|..|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997763
No 75
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.17 E-value=0.00041 Score=52.58 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+..+|.|+|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999997554
No 76
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.17 E-value=0.00041 Score=43.93 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 041535 156 IVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
+|.|.|..|+||||+++.+-+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 77
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.17 E-value=0.00062 Score=56.15 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=39.3
Q ss_pred CCccccHHHHHHHHHHhccCC-ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+...+.+..++..+. ..++-++|+.|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 457999999999999998765 4566679999999999999999865
No 78
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.14 E-value=0.0016 Score=51.30 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=41.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCC----CCcEEEEEEeCCccCHHHHHHHHHHHcC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAKKIG 211 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 211 (216)
.-.++.|+|.+|+|||+|+.++.-.. .... ....++|++....++..++.. ++++++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~ 78 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFG 78 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhc
Confidence 56799999999999999999986543 1122 136799999988888765543 444444
No 79
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00046 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|+|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 80
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0008 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=24.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|||-|.+|+||||+|+.++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999987
No 81
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.10 E-value=0.00083 Score=53.11 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEe
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV 193 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~v 193 (216)
.-.++|+|..|+|||||+..+.... ...|.++.+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 4467899999999999999998876 788988887754
No 82
>PRK04040 adenylate kinase; Provisional
Probab=97.10 E-value=0.00054 Score=52.35 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 83
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.10 E-value=0.00037 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|||.|..|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 84
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.09 E-value=0.0011 Score=48.27 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=28.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCC
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 195 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 195 (216)
.+|.|+|..|+|||||++.+.+.. . +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEccC
Confidence 489999999999999999999988 2 34555555666555
No 85
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.019 Score=50.52 Aligned_cols=26 Identities=35% Similarity=0.675 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+|+|+|.+|+||||++..+....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999998887654
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.07 E-value=0.0014 Score=51.39 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=30.0
Q ss_pred ccccHHHH-HHHHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 135 VVGLQSTF-ERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 135 ~vG~~~~~-~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.|.+... ..+.++... .....+.|+|..|+|||+||+.+++..
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34544333 333333332 345678899999999999999999875
No 87
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00054 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.+|+|=||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.00081 Score=59.04 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=39.2
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.|.+++..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999988887765 456899999999999999998876
No 89
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.06 E-value=0.00085 Score=54.69 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
....+|||.|..|+||||||+.+-.-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999877443
No 90
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.06 E-value=0.00059 Score=48.33 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|-|+|+.|+||||+|+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 4689999999999999999987
No 91
>PRK06893 DNA replication initiation factor; Validated
Probab=97.06 E-value=0.0019 Score=50.97 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=28.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 194 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 194 (216)
....+-++|+.|+|||+|++.+++.. ......+.+++++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY---LLNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEeeHH
Confidence 34568999999999999999999976 1222334566654
No 92
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0033 Score=55.67 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=38.6
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+..|.+.+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999977654 457789999999999999998755
No 93
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.003 Score=58.50 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=39.8
Q ss_pred CCccccHHHHHHHHHHhccCCceE-EEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGI-VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~v-i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+.-++.|.+.+..+.+.- +-++|+.|+||||+|+.+.+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 457999999999999998776665 4799999999999999998876
No 94
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.00099 Score=58.02 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=38.5
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+.....|.+.+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999888888888877766 457899999999999999997765
No 95
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.03 E-value=0.00052 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 96
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.03 E-value=0.0012 Score=50.14 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=31.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeC
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 194 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 194 (216)
.++|.|+|+.|+|||||++.+.... ...|...++.+--
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeeccc
Confidence 4789999999999999999999987 7788766665543
No 97
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.02 E-value=0.0024 Score=51.93 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=30.2
Q ss_pred HHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 142 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 142 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++..+++...+..++.|+|..|+|||||+..+.+..
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334445555789999999999999999999999876
No 98
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.01 E-value=0.0024 Score=51.30 Aligned_cols=55 Identities=22% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCC
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGL 212 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 212 (216)
..-+++.|+|.+|+|||+++.++-... -.++..++||+.... ..++.+.+.+ +|.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 478899999999999999999987766 455899999999884 4555555443 443
No 99
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.00 E-value=0.00098 Score=61.19 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=39.1
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++||+.+..++++.|....-.-+-++|.+|+|||+||+.+....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999987644555689999999999999998764
No 100
>CHL00181 cbbX CbbX; Provisional
Probab=96.98 E-value=0.0016 Score=53.19 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=31.9
Q ss_pred CccccHHHHHHHHHHhc---c------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVM---E------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~---~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..++++.++.. - .....+-++|.+|+||||+|+.+.+..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46888777776554431 0 123347789999999999999997754
No 101
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.98 E-value=0.002 Score=52.38 Aligned_cols=26 Identities=42% Similarity=0.722 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.++|+.|+||||++..+....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999987766
No 102
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.98 E-value=0.00074 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999987764
No 103
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.98 E-value=0.0025 Score=53.20 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=45.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc-ccC--CCCCcEEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF-LVS--PNHFDFVIWVVVSKDLQLEKIQECVAKKIGLFN 214 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~-~~v--~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 214 (216)
.-+++=|+|.+|+|||+|+..++=.. ... ...-..++||....+|++++|.+ |++++|++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~ 188 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDA 188 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCCh
Confidence 56788899999999999999875322 110 11224789999999999999765 677787764
No 104
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.98 E-value=0.0011 Score=48.58 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=30.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccC
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQ 198 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~ 198 (216)
++.|+|.+|+||||++..+.... ...-..++++.....++
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999998876 33445677777665543
No 105
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0043 Score=54.66 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=54.3
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhcccCC-------------------CCCcEEEEEE
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKFLVSP-------------------NHFDFVIWVV 192 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~v~-------------------~~F~~~~wv~ 192 (216)
.+++|.+..++.|.+++..+.+. .+-++|+.|+||||+|+.+.... ... +.|.-.+.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-NCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-cCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 35799999999999999877655 46799999999999999987765 211 1222345555
Q ss_pred eCCccCHHHHHHHHHHHcCC
Q 041535 193 VSKDLQLEKIQECVAKKIGL 212 (216)
Q Consensus 193 vs~~~~~~~i~~~i~~~l~~ 212 (216)
.+....++++ +++++.+..
T Consensus 95 aas~~~v~~i-R~l~~~~~~ 113 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY 113 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh
Confidence 5555556554 566665543
No 106
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.96 E-value=0.0038 Score=51.47 Aligned_cols=59 Identities=24% Similarity=0.301 Sum_probs=44.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCC----CCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-+++-|+|.+|+|||||+.+++-.. .... .=..++||....+|+.+++. ++++.++++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~ 156 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLD 156 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 57888999999999999999987654 2111 11379999999999988765 456666654
No 107
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.96 E-value=0.00068 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|.|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998853
No 108
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.95 E-value=0.0018 Score=50.67 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=28.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEK 201 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~ 201 (216)
.|+|+|-||+||||+|..+.... -.++-|+.- =|....++|+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~~VL-vVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGYNVL-VVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCceEE-EEeCCCCCChHH
Confidence 68999999999999999965555 222224433 345555555543
No 109
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.95 E-value=0.00082 Score=46.84 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998776
No 110
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.94 E-value=0.0011 Score=51.38 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=26.9
Q ss_pred HhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 148 CVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 148 ~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+.+.++++|+++|..|+|||||...+....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999998764
No 111
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.94 E-value=0.0007 Score=51.30 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|+|.|..|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998874
No 112
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.94 E-value=0.00092 Score=50.26 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 113
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.93 E-value=0.0041 Score=53.62 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=37.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc--CHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL--QLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~ 213 (216)
...+|.++|..|+||||++..+.... . +..+. ++-|+. +.+ ...+-++.+..+++++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~-~~g~k-V~lV~~-D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-K-KKGLK-VGLVAA-DTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H-HcCCe-EEEecC-CCCCHHHHHHHHHHHHHcCCc
Confidence 46899999999999999999998776 3 22232 222332 222 3355566677776654
No 114
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.93 E-value=0.0024 Score=57.55 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=57.6
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCC
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGL 212 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 212 (216)
+.++|.+..++.|...+... +.+-++|.+|+||||+|+.+.+.. . ..+|+..+|..-+ .-+...+++.++.++|-
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~np-~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPNP-EDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeCC-CcchHHHHHHHHHhcCH
Confidence 44789888888877766654 368889999999999999998875 2 3457888887664 34778888888877663
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.93 E-value=0.0025 Score=59.89 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=48.7
Q ss_pred CccccHHHHHHHHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeC-CccCHHHHHHHHHHHcC
Q 041535 134 SVVGLQSTFERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS-KDLQLEKIQECVAKKIG 211 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~ 211 (216)
.++-|. .|.+.|.. ...+++.|.|++|.|||||+....... ..++|+++. .+-++..+...++..++
T Consensus 15 ~~~~R~----rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~-------~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 15 NTVVRE----RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGK-------NNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccCcch----HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhC-------CCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 345555 45555543 367899999999999999999977533 268999996 45577777777777663
No 116
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.93 E-value=0.0044 Score=55.77 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=52.1
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCC
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGL 212 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 212 (216)
+.++|.++..+.+...+.... -+-++|+.|+|||||++.+.+.. . ...|...+.+.-+ ..+...+++.++..+|.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 457898888877777666543 44499999999999999999876 2 2334444433322 33566778888887764
No 117
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0016 Score=54.93 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=39.3
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.+.+.+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 4579999999999998887654 467899999999999999998765
No 118
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.92 E-value=0.002 Score=51.04 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=32.0
Q ss_pred CCccccHH-HHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQS-TFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~-~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|.+. ....+-.+........+-|+|+.|+|||+|++.+++..
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34556333 33334444434455688999999999999999999875
No 119
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.91 E-value=0.00075 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999987765
No 120
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.0038 Score=56.05 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=38.1
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+..|.+++..+.+ ..+-++|..|+||||+|+.+.+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999988765 566899999999999999985443
No 121
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.90 E-value=0.0027 Score=49.61 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=37.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC------cEEEEEEeCCccCHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF------DFVIWVVVSKDLQLEKIQ 203 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F------~~~~wv~vs~~~~~~~i~ 203 (216)
.-.++.|+|.+|+|||+|+..+.-.. ...- ..++|+.....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 56799999999999999999987654 1222 467899988888876654
No 122
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.90 E-value=0.005 Score=50.83 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=45.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCC----CCCcEEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSP----NHFDFVIWVVVSKDLQLEKIQECVAKKIGLFN 214 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 214 (216)
.-+++-|+|.+|+|||+|+..+.-.. ... ..=..++||+...+|++++|.+ ++++++.+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~ 158 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDP 158 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCCh
Confidence 56788999999999999998865322 111 1224789999999999998764 677777654
No 123
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.90 E-value=0.0025 Score=49.95 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=36.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKI 202 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i 202 (216)
.-+++-|+|.+|+|||+|+.++.... ...-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHH
Confidence 56799999999999999999998766 2334678899887 5665554
No 124
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.89 E-value=0.00089 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+|+|+|+.|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998875
No 125
>PRK06217 hypothetical protein; Validated
Probab=96.89 E-value=0.0009 Score=50.80 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcccCCCCC--cEEEEEEe
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHF--DFVIWVVV 193 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F--~~~~wv~v 193 (216)
..|.|.|++|+||||||+.+.... .. .+| |..+|-.-
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l-~~-~~~~~D~~~~~~~ 40 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL-DI-PHLDTDDYFWLPT 40 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CC-cEEEcCceeeccC
Confidence 358999999999999999999887 43 344 55667543
No 126
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.88 E-value=0.0038 Score=44.93 Aligned_cols=41 Identities=34% Similarity=0.341 Sum_probs=30.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHH
Q 041535 157 VGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQ 203 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~ 203 (216)
|-++|..|+|||+||+.+.... .. ...-+.++...+..+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEeccccccccce
Confidence 4689999999999999998876 22 23346777777777665
No 127
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.88 E-value=0.002 Score=53.70 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=39.3
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|.+..+..++-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3579999999998888888777778899999999999999997543
No 128
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.87 E-value=0.001 Score=48.08 Aligned_cols=23 Identities=43% Similarity=0.748 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998864
No 129
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.87 E-value=0.0009 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|.|.|+.|+||||+|+.+-...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 130
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.87 E-value=0.0069 Score=45.39 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=40.2
Q ss_pred ccccHHHHHHHHHHhcc---CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHH
Q 041535 135 VVGLQSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 207 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 207 (216)
++|......++++.+.. .+..| -|+|..|+||+.+|+.||+.. ...-.+-+-|..+ .++.+.+-.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pV-lI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~-~~~~~~~e~~LF 71 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPV-LITGETGTGKELLARAIHNNS---PRKNGPFISVNCA-ALPEELLESELF 71 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-E-EEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETT-TS-HHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCE-EEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehh-hhhcchhhhhhh
Confidence 46777777777776643 34444 499999999999999999966 2222333444444 234444444443
No 131
>PRK00625 shikimate kinase; Provisional
Probab=96.87 E-value=0.00098 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.++||.|+||||+++.+-++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997765
No 132
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.84 E-value=0.0012 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.++|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 133
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.83 E-value=0.0012 Score=49.65 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+|.|+|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998876
No 134
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.83 E-value=0.005 Score=51.41 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=45.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCC----CCCcEEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSP----NHFDFVIWVVVSKDLQLEKIQECVAKKIGLFN 214 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 214 (216)
.-.++-|+|.+|+|||+|+..++-.. ... ..-..++||....+|+++++. +|+++++++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~ 185 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNG 185 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCCh
Confidence 57788899999999999999877543 111 112379999999999998874 5677777654
No 135
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.83 E-value=0.068 Score=45.98 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.++|..|+||||++..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999887655
No 136
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.82 E-value=0.0043 Score=51.35 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=44.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCC----CcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNH----FDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-+++-|+|.+|+|||+|+.++.-.. ..... =..++||+...+|++.++.+ ++++++..
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~ 163 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLD 163 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCC
Confidence 57789999999999999999987653 11111 14799999999999888754 45666654
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.82 E-value=0.0022 Score=53.64 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=40.4
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|.++.+..|+..+.+..+.-+-|.|..|+||||+|+.+|+-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3479999999999999888888877799999999999999997654
No 138
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.82 E-value=0.0038 Score=48.65 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=32.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQ 198 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~ 198 (216)
.-+++-|.|.+|+|||||+.++.... ...-..++|+.....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 57899999999999999999987765 22334567776655443
No 139
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.80 E-value=0.0055 Score=52.25 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=47.8
Q ss_pred CCccccHHHHHHHHHHhccC--------------CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC---cEEEEEEeC-
Q 041535 133 TSVVGLQSTFERVWSCVMED--------------TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF---DFVIWVVVS- 194 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~--------------~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F---~~~~wv~vs- 194 (216)
..++|.++.++.+.-.+... ..+-|-++|+.|+|||+||+.+.... .-.| +..-++..+
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeecceeecCCc
Confidence 45789988888876655431 24678899999999999999998876 3333 222222221
Q ss_pred CccCHHHHHHHHHHH
Q 041535 195 KDLQLEKIQECVAKK 209 (216)
Q Consensus 195 ~~~~~~~i~~~i~~~ 209 (216)
...+...+++.++..
T Consensus 89 vG~dvE~i~r~l~e~ 103 (441)
T TIGR00390 89 VGRDVESMVRDLTDA 103 (441)
T ss_pred ccCCHHHHHHHHHHH
Confidence 122566666665443
No 140
>PRK10536 hypothetical protein; Provisional
Probab=96.80 E-value=0.0033 Score=50.17 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=39.1
Q ss_pred ccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEE
Q 041535 135 VVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVI 189 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~ 189 (216)
+.++......++.+|.+. .++.+.|.+|+|||+||..+.-+. -..+.|+..+
T Consensus 57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIi 108 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRII 108 (262)
T ss_pred ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEE
Confidence 567888888888888664 499999999999999999988764 1133455444
No 141
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.80 E-value=0.002 Score=54.98 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=36.9
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|.+..++++.+.+.- ...+-+-++|++|+|||+||+.+.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999888888776531 245678899999999999999999876
No 142
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0031 Score=53.83 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++.++|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999997654
No 143
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.78 E-value=0.0032 Score=45.27 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 141 TFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 141 ~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+..++.+.|.. ..-.+|.+.|.-|+|||||++.+....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 33444444433 345689999999999999999999886
No 144
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.0019 Score=55.95 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=39.7
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+..|..++..+.+. .+-++|+.|+||||+|+.+.+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999999887754 57899999999999999998765
No 145
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.78 E-value=0.003 Score=50.93 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=39.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC-cEEEEEEeCCcc-CHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF-DFVIWVVVSKDL-QLEKIQECVAK 208 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F-~~~~wv~vs~~~-~~~~i~~~i~~ 208 (216)
.-..++|+|..|+|||||++.+++.. +.+| +.++++-+.+.. ...++.+++.+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 45678999999999999999999987 3344 456777787766 44556666544
No 146
>PRK09087 hypothetical protein; Validated
Probab=96.78 E-value=0.004 Score=49.01 Aligned_cols=28 Identities=32% Similarity=0.217 Sum_probs=23.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 151 EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 151 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+..-+.+.|+|..|+|||+|++.+++..
T Consensus 41 ~~~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 41 NWPSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 3345678999999999999999988754
No 147
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.77 E-value=0.01 Score=47.64 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=43.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCC----CCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSP----NHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-.+.=|+|.+|+|||.|+..+.=.. ... +.=..++||.-...|+..++. +|+++.++.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~ 99 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLD 99 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccc
Confidence 56799999999999999998876543 211 122469999999999998886 467776553
No 148
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.77 E-value=0.0019 Score=53.33 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=37.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-+++-|+|.+|+||||||.++.... ...-..++||...+.++.. .++++|++
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd 106 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVD 106 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCC
Confidence 56799999999999999998876655 2334567788776666553 34555543
No 149
>PRK13949 shikimate kinase; Provisional
Probab=96.77 E-value=0.0013 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+-|.|+|+.|+|||||++.+....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999998875
No 150
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.0023 Score=54.69 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=38.6
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.|.+++..+.+. .+-++|+.|+||||+|..+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999988877654 47789999999999999887655
No 151
>PRK13975 thymidylate kinase; Provisional
Probab=96.76 E-value=0.0015 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+++.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 152
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.76 E-value=0.0012 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998765
No 153
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.76 E-value=0.0053 Score=50.78 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=43.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccC----CCCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVS----PNHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-.++-|+|.+|+|||||+..++-.. .. ...-..++||.-...|+..++ ..+++++++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 57899999999999999999887532 11 112246799999888888874 4566776654
No 154
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.76 E-value=0.0014 Score=49.29 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 155
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.75 E-value=0.0016 Score=50.06 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=24.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998865
No 156
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.74 E-value=0.0022 Score=47.42 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|++|+|+.|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 157
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.73 E-value=0.0013 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46789999999999999998865
No 158
>PRK14530 adenylate kinase; Provisional
Probab=96.72 E-value=0.0015 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|+|++|+||||+++.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997765
No 159
>PRK13947 shikimate kinase; Provisional
Probab=96.72 E-value=0.0016 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.|+||+|+||||+++.+-+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998875
No 160
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.0043 Score=52.58 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|+++|.+|+||||++..+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 161
>PRK13695 putative NTPase; Provisional
Probab=96.71 E-value=0.0023 Score=48.10 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 162
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.71 E-value=0.0055 Score=49.58 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...++|.++|++|+||||++..+....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356899999999999999998887665
No 163
>PTZ00035 Rad51 protein; Provisional
Probab=96.71 E-value=0.011 Score=49.41 Aligned_cols=60 Identities=23% Similarity=0.228 Sum_probs=43.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccC----CCCCcEEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVS----PNHFDFVIWVVVSKDLQLEKIQECVAKKIGLFN 214 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v----~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 214 (216)
.-.++-|+|..|+|||||+..+.-.. .. ...=..++||.-...|++++| ..+++++++..
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~ 180 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDP 180 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCCh
Confidence 57899999999999999999886543 21 112235779998888888884 45577766643
No 164
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.70 E-value=0.0059 Score=51.33 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHHHHHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcE-EEEEEeCCcc-CHHHHHHHHHHHcCCC
Q 041535 141 TFERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDF-VIWVVVSKDL-QLEKIQECVAKKIGLF 213 (216)
Q Consensus 141 ~~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~ 213 (216)
...++++.+.. ..-..+.|+|..|+|||||++.+.+.. . ..+=+. ++|+.+.+.. .+.++++.+...+..+
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i-~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV-A-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH-H-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 33457777764 344567999999999999999988866 2 223344 4787777765 7788888887776653
No 165
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.70 E-value=0.0056 Score=48.28 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=34.2
Q ss_pred CceEEEEEeCCCCcHHHHHHH-HHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQ-INNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGL 212 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~-v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 212 (216)
.-.++.|.|..|+|||||+.+ +++-. +.. ...++++ -.-+..++++.+ .++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g-~~~~yi~--~e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL---QNG-YSVSYVS--TQLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hCC-CcEEEEe--CCCCHHHHHHHH-HHhCC
Confidence 456999999999999999754 45432 122 3445555 333556777776 45554
No 166
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.70 E-value=0.0021 Score=47.50 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..||=+.|.+|+||||||+.+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999987
No 167
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.70 E-value=0.0015 Score=46.90 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.+++|+|..|+|||||.+.+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4589999999999999999998765
No 168
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.69 E-value=0.0014 Score=45.31 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|-|+|.+|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999976554
No 169
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0059 Score=51.50 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=37.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc--CHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL--QLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~ 213 (216)
.-.++.++|+.|+||||++..+.... ........+..|+ ...+ ...+-++...+.+|++
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~ 196 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVP 196 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCc
Confidence 35799999999999999999998765 1111122344444 3333 4455566656666654
No 170
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.68 E-value=0.0013 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.|+|+|-||+||||++..+....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 479999999999999888776544
No 171
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.68 E-value=0.0038 Score=46.77 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.++|++|+||||++..+....
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999999987765
No 172
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.67 E-value=0.0017 Score=47.48 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.++|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 173
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.67 E-value=0.0057 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 174
>PRK14974 cell division protein FtsY; Provisional
Probab=96.66 E-value=0.0048 Score=51.41 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=36.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccC--HHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQ--LEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~ 213 (216)
...+|.++|+.|+||||++..+.... . ...+. ++.+. .+.+. ..+-++.....+|++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCc
Confidence 47899999999999999888887765 2 22343 23333 33332 334456667777654
No 175
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.66 E-value=0.0019 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~ 175 (216)
.-..++|+|..|+|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999975
No 176
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0017 Score=50.19 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|++|+|+.|+|||||.+.++.=.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 56799999999999999999998754
No 177
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.65 E-value=0.0032 Score=54.25 Aligned_cols=45 Identities=29% Similarity=0.345 Sum_probs=36.1
Q ss_pred CccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++.|.+..++++.+.+.- ...+-+-++|++|+|||+||+.+.+..
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899888888876631 234567799999999999999999976
No 178
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.65 E-value=0.0015 Score=52.07 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 46799999999999999999998855
No 179
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0028 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.++||+|..|+|||||++.+-.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 5678999999999999999998543
No 180
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.64 E-value=0.005 Score=54.57 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=37.8
Q ss_pred CccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+++|.+...+.+...+......-+-|+|..|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999888776655566789999999999999998743
No 181
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0016 Score=48.53 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~ 175 (216)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999986
No 182
>PRK05642 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.0091 Score=47.22 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=27.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeC
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 194 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 194 (216)
...+.|+|..|+|||.|++.+++.. . ..-..+++++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHH
Confidence 4678999999999999999998865 2 112345566543
No 183
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.63 E-value=0.0021 Score=48.36 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|+|+.|+|||||++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999998765
No 184
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.63 E-value=0.0024 Score=45.41 Aligned_cols=40 Identities=35% Similarity=0.425 Sum_probs=22.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHH
Q 041535 157 VGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKI 202 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i 202 (216)
+-++|.+|+||||||+.+.... ...|.. |..+.+.-+.+|
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R---Iq~tpdllPsDi 41 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR---IQFTPDLLPSDI 41 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE---EE--TT--HHHH
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE---EEecCCCCcccc
Confidence 4589999999999999999876 667743 344444444444
No 185
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.62 E-value=0.0074 Score=48.57 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHH
Q 041535 141 TFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQ 203 (216)
Q Consensus 141 ~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~ 203 (216)
-++++..++..+ . -+-+.|.+|+|||+||+.+.... ... .+.++.+...+..+++
T Consensus 10 l~~~~l~~l~~g-~-~vLL~G~~GtGKT~lA~~la~~l---g~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG-Y-PVHLRGPAGTGKTTLAMHVARKR---DRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC-C-eEEEEcCCCCCHHHHHHHHHHHh---CCC---EEEEeCCccCCHHHHh
Confidence 344444444432 2 34489999999999999998754 332 3456666665555554
No 186
>PRK09354 recA recombinase A; Provisional
Probab=96.61 E-value=0.003 Score=52.73 Aligned_cols=53 Identities=26% Similarity=0.241 Sum_probs=40.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-+++-|+|+.|+|||||+.++.-.. ...-..++||..-..++.. .++++|+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvd 111 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVD 111 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCC
Confidence 56788999999999999999987655 3445678888888877753 45556554
No 187
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.61 E-value=0.0016 Score=48.35 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.|+|+.|+||||+|+.+-...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999988765
No 188
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0018 Score=51.10 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-..++|+|+.|+|||||.+.|..=.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999986543
No 189
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.61 E-value=0.0016 Score=50.55 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 568899999999999999998876
No 190
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.60 E-value=0.0057 Score=49.82 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=30.5
Q ss_pred CccccHHHHHHHHHHhc---c------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVM---E------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~---~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.++.++++.++.. - ....-+-++|.+|+||||+|+.+....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 46888777777655432 1 012257789999999999997765544
No 191
>PRK14527 adenylate kinase; Provisional
Probab=96.60 E-value=0.0024 Score=48.74 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|+|++|+||||+|+.+....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 192
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.59 E-value=0.0065 Score=47.91 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=39.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-+++.|+|.+|+|||+|+.++.... -..=..++|++..++ +..+++.+ +++|..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~ 78 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKID 78 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCC
Confidence 57899999999999999999984433 123457888888765 45666663 556644
No 193
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.59 E-value=0.19 Score=43.00 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=41.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCH--HHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL--EKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~ 213 (216)
...||-.||.-|.||||-+-.+.+.. ++ ....+-+...+.+.+ -+=|+.+.++++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~l---kk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYL---KK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHH---HH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 46799999999999999999998888 23 444444444555544 44478888888765
No 194
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.59 E-value=0.0037 Score=51.71 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=34.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 199 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~ 199 (216)
.-+++-|+|++|+||||||.++.-.. ...-..++||.....+++
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHH
Confidence 56788899999999999999977655 234456788887776665
No 195
>PRK06761 hypothetical protein; Provisional
Probab=96.59 E-value=0.0053 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|.|.|+.|+||||+++.+.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999987
No 196
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.014 Score=49.30 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=36.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc--CHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL--QLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~ 213 (216)
..+++.++|+.|+||||++..+.... ..++ ..+.+|+.. ++ ...+-++...+.++++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~g--~~V~lItaD-tyR~gAveQLk~yae~lgvp 263 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQN--RTVGFITTD-TFRSGAVEQFQGYADKLDVE 263 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeCC-ccCccHHHHHHHHhhcCCCC
Confidence 57899999999999999999987655 2222 234445442 22 2344455555555543
No 197
>PRK06620 hypothetical protein; Validated
Probab=96.58 E-value=0.002 Score=50.28 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=30.9
Q ss_pred CCCcccc-HH-HHHHHHHHhccC--Cc--eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 132 PTSVVGL-QS-TFERVWSCVMED--TI--GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 132 ~~~~vG~-~~-~~~~l~~~L~~~--~~--~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++.++|. .. ....+.++-... +. +.+-|+|+.|+|||+|++.+.+..
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence 3446675 32 333444443322 12 668999999999999999988765
No 198
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.58 E-value=0.0091 Score=46.83 Aligned_cols=54 Identities=30% Similarity=0.289 Sum_probs=36.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGL 212 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 212 (216)
.-.++.|.|.+|+|||||+..+..... ..-+..+|++...+ ...+.+. ++++|.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESIIRQ-AAQFGM 72 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHHH-HHHhCC
Confidence 568999999999999999998654431 22356788877443 4555444 555554
No 199
>PRK05439 pantothenate kinase; Provisional
Probab=96.57 E-value=0.0047 Score=50.82 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987644
No 200
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.55 E-value=0.0023 Score=48.30 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|+|..|+|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999865
No 201
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.0024 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|-|.|.+|+||||+|+.+-+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998886
No 202
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.54 E-value=0.006 Score=53.54 Aligned_cols=45 Identities=31% Similarity=0.407 Sum_probs=36.4
Q ss_pred CccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+.|.+..++++.+.+.- ...+-+-++|++|+|||++|+.+++..
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 367899988888877631 135568899999999999999999986
No 203
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.54 E-value=0.0022 Score=49.97 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998764
No 204
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.53 E-value=0.0024 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998776
No 205
>PRK04182 cytidylate kinase; Provisional
Probab=96.53 E-value=0.0026 Score=47.74 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998765
No 206
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.011 Score=53.86 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=38.1
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.|.+++..+++ ..+-++|..|+||||+|+.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999987654 355699999999999999877655
No 207
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.53 E-value=0.0022 Score=49.61 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 208
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.0039 Score=55.56 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=38.6
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.+.+.+..+.+ ..+-++|+.|+||||+|+.+....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999877654 467899999999999999987664
No 209
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.52 E-value=0.002 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|+|-||+||||++..+-.-.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999888875554
No 210
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.52 E-value=0.0044 Score=45.97 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 140 STFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 140 ~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...++|.+.|.+ +++.++|..|+|||||...+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 345667777754 799999999999999999998874
No 211
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.51 E-value=0.0022 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 041535 157 VGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~ 177 (216)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999998775
No 212
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.51 E-value=0.0027 Score=44.23 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 041535 157 VGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~ 177 (216)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999984
No 213
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.51 E-value=0.0042 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|+|+.|+||||++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999876654
No 214
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.51 E-value=0.0021 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.679 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|.|-||+||||++..+-.-.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 579999999999999877765444
No 215
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.0078 Score=48.72 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=41.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 204 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 204 (216)
.-+++=|+|+.|.||||||.+++-.. +..-..++||..-+.+++..+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH
Confidence 67899999999999999999987765 55555899999999999987654
No 216
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.50 E-value=0.0021 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|+|-||+||||++-.+-.-.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999888876555
No 217
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.49 E-value=0.0023 Score=46.86 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|+++|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999997654
No 218
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.016 Score=51.32 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=38.8
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.+.+++..+.+. .+-++|+.|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999887655 46789999999999999987655
No 219
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.49 E-value=0.0026 Score=47.67 Aligned_cols=22 Identities=41% Similarity=0.609 Sum_probs=19.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.|.|..|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999999876
No 220
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.49 E-value=0.0032 Score=48.49 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998865
No 221
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.12 Score=41.27 Aligned_cols=44 Identities=32% Similarity=0.370 Sum_probs=33.6
Q ss_pred ccccHHHHHHHHHHhc---c----------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 135 VVGLQSTFERVWSCVM---E----------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~---~----------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+-|.+-.++++.+... . +..+=+-.+|++|+|||-||+.|.|+.
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 4567766666665542 1 356677789999999999999999986
No 222
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.48 E-value=0.0024 Score=48.61 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 223
>PRK12377 putative replication protein; Provisional
Probab=96.48 E-value=0.0026 Score=50.69 Aligned_cols=40 Identities=28% Similarity=0.246 Sum_probs=30.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 195 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 195 (216)
....+.++|..|+|||+||..+.+.. ....-.+++++++.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l---~~~g~~v~~i~~~~ 139 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL---LAKGRSVIVVTVPD 139 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEEEHHH
Confidence 34678999999999999999999987 23334457776643
No 224
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.48 E-value=0.0021 Score=47.12 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|+.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987765
No 225
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.48 E-value=0.0024 Score=49.63 Aligned_cols=26 Identities=35% Similarity=0.315 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 226
>PRK13946 shikimate kinase; Provisional
Probab=96.48 E-value=0.0031 Score=47.91 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+.|.++|+.|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999876
No 227
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0025 Score=46.99 Aligned_cols=23 Identities=26% Similarity=0.614 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|.|-|.+|+||||+|+.+.++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 68999999999999999998776
No 228
>PLN02796 D-glycerate 3-kinase
Probab=96.48 E-value=0.0026 Score=52.93 Aligned_cols=26 Identities=31% Similarity=0.421 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-+|+|.|..|+|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 56789999999999999999999876
No 229
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.48 E-value=0.0026 Score=52.10 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=23.3
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 151 EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 151 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+++.+||++.|-||+||||++-.+-.-.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 4578999999999999999887765544
No 230
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.47 E-value=0.0099 Score=50.78 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCccccHHHHHHHHHHhccC--------------CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMED--------------TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~--------------~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+..++... ..+-|-++|+.|+|||+||+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999998888777430 24678999999999999999998876
No 231
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.0027 Score=47.07 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.+++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 589999999999999998876543
No 232
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.47 E-value=0.018 Score=45.63 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=38.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-+++-|.|.+|+|||+||.++.... -..-+..+||+... ++..+.+. +.++|.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~-~~~~g~~ 74 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRN-MAQFGWD 74 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHH-HHHhCCC
Confidence 67899999999999999998854432 12346788888765 55566666 3455543
No 233
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.0044 Score=54.11 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=37.5
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.+++|.+..++.|.+.+..+.+. -+-++|+.|+||||+|+.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 45799999999888888777665 788999999999999998865
No 234
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.0053 Score=51.81 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=39.4
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+...+.+.+.+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999987654 478899999999999999997765
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.22 Score=41.48 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=29.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCC
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 195 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 195 (216)
..-+-++|..|+|||+||..|.+... ..-..+++++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~~~ 221 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTADE 221 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEHHH
Confidence 37799999999999999999999872 2223556666543
No 236
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.46 E-value=0.0077 Score=42.70 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=36.0
Q ss_pred CCccccHHHHHHHHHHhcc-------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|..-..+.+++.+.+ ...-|++..|..|+|||.+++.|.+..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3467877777777766643 367899999999999999888887764
No 237
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.45 E-value=0.0053 Score=48.17 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=48.1
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCC-CCcEEEEEEeCCccCHH
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPN-HFDFVIWVVVSKDLQLE 200 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~-~F~~~~wv~vs~~~~~~ 200 (216)
.++||-++..+.+--...+++..-+-|-||+|+||||-+..+.+... .. .=+.+.=...|+.-.++
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL--G~~~ke~vLELNASdeRGID 93 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL--GDSYKEAVLELNASDERGID 93 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh--ChhhhhHhhhccCccccccH
Confidence 35799999999998888889999999999999999998777766552 11 12234444555554443
No 238
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.45 E-value=0.003 Score=46.85 Aligned_cols=25 Identities=36% Similarity=0.658 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|++|+|..|+|||||...+-...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4799999999999999999996655
No 239
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.45 E-value=0.0092 Score=52.02 Aligned_cols=58 Identities=22% Similarity=0.240 Sum_probs=36.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc--CHHHHHHHHHHHcCCC
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL--QLEKIQECVAKKIGLF 213 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~ 213 (216)
..|++++|+.|+||||++.++.... ..+..-..+..|.. +.+ ...+-++...+.+|++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTT-DSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhCCC
Confidence 4799999999999999999998766 22221123344443 333 3344455556666554
No 240
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.44 E-value=0.0026 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.-.+++|+|..|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999999964
No 241
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0029 Score=47.78 Aligned_cols=26 Identities=42% Similarity=0.446 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 242
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.0056 Score=55.04 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=39.0
Q ss_pred CCccccHHHHHHHHHHhccCC-ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.|.+++..+. ...+-++|+.|+||||+|+.+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999998775 4577899999999999999887654
No 243
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.43 E-value=0.0025 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.690 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|.|-||+||||++..+....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 578999999999999988876655
No 244
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.42 E-value=0.0083 Score=49.52 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcc---CCceEEEEEeCCCCcHHHHHHHHHHhcccCC--CCC---cEEEEEEeCCccCHHHHHHHHHHHc
Q 041535 139 QSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKFLVSP--NHF---DFVIWVVVSKDLQLEKIQECVAKKI 210 (216)
Q Consensus 139 ~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~--~~F---~~~~wv~vs~~~~~~~i~~~i~~~l 210 (216)
+...+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+.. +.. ..+ ..-+|-.-+.+--...++..|..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L-~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL-KEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH-hcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 4456677777775 478899999999999999999999988 333 112 2344555554444566777777666
Q ss_pred CC
Q 041535 211 GL 212 (216)
Q Consensus 211 ~~ 212 (216)
+.
T Consensus 81 ~~ 82 (325)
T PF07693_consen 81 EK 82 (325)
T ss_pred HH
Confidence 53
No 245
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.42 E-value=0.0033 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|.|.|+.|+||||+|+.+-+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999997754
No 246
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.42 E-value=0.0027 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|+|..|+|||||+..+....
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999987766
No 247
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.41 E-value=0.006 Score=51.05 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.+.+.+..+.+ ..+-++|+.|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987654 467789999999999998887664
No 248
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.41 E-value=0.003 Score=49.43 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-..++|+|+.|+|||||...+..-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999987644
No 249
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0029 Score=49.93 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 250
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.40 E-value=0.0036 Score=47.74 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|+|+.|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998864
No 251
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.40 E-value=0.003 Score=53.86 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=24.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+.|+|+|..|+|||||++.+....
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998875
No 252
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.016 Score=52.21 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=39.1
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.|.+.+..+.+. .+-++|..|+||||+|+.+.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999887654 56789999999999999987765
No 253
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.40 E-value=0.0026 Score=47.27 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
+...|+|+|..|+|||||+..+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4566999999999999999999986
No 254
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.39 E-value=0.0026 Score=46.16 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.|-++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999998866
No 255
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.39 E-value=0.0079 Score=52.28 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=36.9
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|+++.++.+...+..+ .-+-+.|++|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 45799999999988888754 346689999999999999999865
No 256
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.39 E-value=0.0037 Score=46.40 Aligned_cols=24 Identities=38% Similarity=0.693 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++++|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 257
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.39 E-value=0.0051 Score=52.05 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-+|+|+|..|+|||||+..+....
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l 29 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRL 29 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 258
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.38 E-value=0.0046 Score=46.97 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+.|.++|+.|+||+||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998874
No 259
>PLN02200 adenylate kinase family protein
Probab=96.38 E-value=0.0039 Score=49.34 Aligned_cols=26 Identities=35% Similarity=0.280 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 260
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0031 Score=49.25 Aligned_cols=26 Identities=38% Similarity=0.404 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 261
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.38 E-value=0.0031 Score=49.18 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 262
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.38 E-value=0.0032 Score=48.60 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..+||++|+.|+||||.|+.+-+-
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~ 25 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL 25 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc
Confidence 468999999999999999988763
No 263
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.38 E-value=0.0036 Score=48.51 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..+.|.|+|+.|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 6788999999999999999999754
No 264
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.38 E-value=0.0031 Score=47.68 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+++|+|..|+|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345699999999999999999998754
No 265
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0035 Score=45.61 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-|-|.|.+|+|||||+..+....
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3457799999999999999998654
No 266
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0032 Score=48.77 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 267
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.37 E-value=0.0031 Score=49.96 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45699999999999999999998654
No 268
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.37 E-value=0.0032 Score=48.89 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998754
No 269
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.004 Score=47.05 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.++.|.|+.|+||+||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578899999999999999999975
No 270
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.36 E-value=0.0078 Score=49.78 Aligned_cols=48 Identities=29% Similarity=0.329 Sum_probs=32.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHH
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQE 204 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 204 (216)
.+++-+.|.|||||||+|-..--.. -....-+.-|++....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l---A~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL---AESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH---HHcCCcEEEEEeCCCCchHhhhc
Confidence 4788999999999999998843322 11223366677666666666554
No 271
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0032 Score=48.83 Aligned_cols=26 Identities=38% Similarity=0.416 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 272
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.35 E-value=0.0033 Score=48.13 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999998864
No 273
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.35 E-value=0.0077 Score=51.84 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++.++|++|+||||++..+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999988886655
No 274
>PRK10867 signal recognition particle protein; Provisional
Probab=96.35 E-value=0.019 Score=49.51 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.++|.+|+||||.+..+....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999777776544
No 275
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0035 Score=48.71 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.. .+++|+|..|+|||||++.+..-.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998754
No 276
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.35 E-value=0.0033 Score=49.31 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 55799999999999999999998764
No 277
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0033 Score=49.73 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998654
No 278
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.34 E-value=0.0051 Score=47.55 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEE
Q 041535 138 LQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVV 192 (216)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~ 192 (216)
+..+-...++.|. ...++.+.|++|.|||.||-..--+. -..+.|+..+++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 3444555666666 56699999999999999998877655 3358888888774
No 279
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.34 E-value=0.003 Score=46.79 Aligned_cols=23 Identities=48% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|+|+|.+|+|||||+..+.+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887663
No 280
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.34 E-value=0.0034 Score=49.00 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 281
>PRK13948 shikimate kinase; Provisional
Probab=96.34 E-value=0.0041 Score=47.25 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+.|.++||.|+||||+++.+-...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788999999999999999998875
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.33 E-value=0.0078 Score=46.26 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=28.2
Q ss_pred HHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 143 ERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 143 ~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+.+..++.++-++..|.|.+|+||||++..+....
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 344455555566788899999999999999988776
No 283
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.003 Score=48.91 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+++|+|..|.|||||++.+..-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998754
No 284
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=96.33 E-value=0.003 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|+|-||+||||++-.+-.-.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 689999999999999888765544
No 285
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.33 E-value=0.0035 Score=45.74 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|+++|..|+|||||+..+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999987653
No 286
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.33 E-value=0.016 Score=45.03 Aligned_cols=53 Identities=30% Similarity=0.325 Sum_probs=32.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhccc----CCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKFLV----SPNHFDFVIWVVVSKDLQLEKIQECVAK 208 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~~~----v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 208 (216)
+..|+|++|.||||++..+-..... ....-...+-++...+..++.++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7888999999999766655444311 0134455566666666677777777665
No 287
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.32 E-value=0.0034 Score=48.41 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998854
No 288
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.32 E-value=0.0033 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.++|.+|+|||||+..+.+..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987754
No 289
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.32 E-value=0.0035 Score=49.14 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45799999999999999999997753
No 290
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.32 E-value=0.0035 Score=46.14 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|+|.+|+|||||+..+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999987643
No 291
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0035 Score=48.90 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998754
No 292
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.32 E-value=0.0033 Score=48.75 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998764
No 293
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0035 Score=49.60 Aligned_cols=26 Identities=42% Similarity=0.465 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 294
>PRK08116 hypothetical protein; Validated
Probab=96.30 E-value=0.004 Score=50.27 Aligned_cols=36 Identities=33% Similarity=0.257 Sum_probs=27.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEe
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV 193 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~v 193 (216)
.-+-++|..|+|||.||..|++.. ..+.-.++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l---~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL---IEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEH
Confidence 347899999999999999999987 222345566654
No 295
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.30 E-value=0.0062 Score=50.15 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
+++-+.|-||+||||+|-..--.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~ 24 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA 24 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH
Confidence 67889999999999999665433
No 296
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.30 E-value=0.0036 Score=48.52 Aligned_cols=26 Identities=38% Similarity=0.382 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998764
No 297
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.30 E-value=0.0036 Score=49.42 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 56799999999999999999998654
No 298
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.30 E-value=0.0032 Score=51.00 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 041535 156 IVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
+|+|.|..|+|||||++.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~l 22 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSL 22 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999865
No 299
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.29 E-value=0.0038 Score=47.48 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999987763
No 300
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.29 E-value=0.0034 Score=47.46 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~ 176 (216)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 301
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.0061 Score=54.82 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=38.2
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.|.+.+..+.+. -+-++|+.|+||||+|+.+.+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999988776654 48899999999999998876655
No 302
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=96.29 E-value=0.0034 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.619 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|+|-||+||||++..+-.-.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Confidence 689999999999999988755444
No 303
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.29 E-value=0.022 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...++.++|..|+||||.+..+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999988876654
No 304
>PRK08356 hypothetical protein; Provisional
Probab=96.28 E-value=0.0046 Score=47.39 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHH
Q 041535 154 IGIVGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~ 175 (216)
..+|.|+|+.|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999993
No 305
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.27 E-value=0.0071 Score=48.25 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=36.6
Q ss_pred CccccHHHHHH---HHHHhcc------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFER---VWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~---l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+++|.+..+.+ |++.|.+ ...+-|-.+|++|.|||.+|+.+.|..
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 46888877665 5566654 378899999999999999999999977
No 306
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.27 E-value=0.0037 Score=48.64 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999998754
No 307
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.27 E-value=0.0039 Score=48.13 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 308
>PRK06851 hypothetical protein; Provisional
Probab=96.27 E-value=0.22 Score=42.06 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeC
Q 041535 136 VGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 194 (216)
Q Consensus 136 vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 194 (216)
-|.-...+.+. .+--+++.|.|.+|+|||||++.++... . ..-+++-++=|-+
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a-~-~~G~~v~~~hC~~ 252 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA-E-ERGFDVEVYHCGF 252 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH-H-hCCCeEEEEeCCC
Confidence 46555555555 4556789999999999999999999987 2 3345554444433
No 309
>PLN02348 phosphoribulokinase
Probab=96.27 E-value=0.0047 Score=52.17 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=24.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+..-+|+|.|.+|+||||||+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998876
No 310
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.27 E-value=0.0032 Score=45.58 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 041535 157 VGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~ 177 (216)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999876
No 311
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.27 E-value=0.0037 Score=48.92 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998754
No 312
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.26 E-value=0.0039 Score=48.61 Aligned_cols=26 Identities=46% Similarity=0.558 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998654
No 313
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.25 E-value=0.0068 Score=53.24 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=38.5
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+..|...+..+.+ .-+-++|+.|+||||+|+.+.+..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999998887776654 577889999999999999998765
No 314
>PRK04328 hypothetical protein; Provisional
Probab=96.25 E-value=0.011 Score=47.13 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=38.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-+++-|.|.+|+|||+|+.++.... -..-+..+||+...+ +..+.+ .++++|.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~--~~~i~~-~~~~~g~d 76 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH--PVQVRR-NMRQFGWD 76 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC--HHHHHH-HHHHcCCC
Confidence 57799999999999999999865443 123467788888774 444443 45666653
No 315
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.25 E-value=0.0035 Score=45.06 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|+++|..|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988765
No 316
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.25 E-value=0.004 Score=49.07 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 317
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.24 E-value=0.0042 Score=47.89 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998754
No 318
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.23 E-value=0.0067 Score=45.41 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=25.5
Q ss_pred HHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 144 RVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 144 ~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.+.+++.......|.++|.+|+|||||...+...
T Consensus 5 ~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred HHHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 4555554444567889999999999999998653
No 319
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.23 E-value=0.0049 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998875
No 320
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.23 E-value=0.0042 Score=48.73 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998754
No 321
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0041 Score=49.82 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 322
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.22 E-value=0.008 Score=52.88 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=33.2
Q ss_pred CccccHHHHHHHHHHhc---c---------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVM---E---------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++.|.+..++++.+.+. . ...+-+-++|++|+|||+||+.+.+..
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 46788877766655442 1 123457789999999999999998876
No 323
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.22 E-value=0.0042 Score=44.90 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.++|..|+|||||+..+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999997765
No 324
>PRK13768 GTPase; Provisional
Probab=96.22 E-value=0.0081 Score=48.09 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++.|.|++|+||||++..+....
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 3588999999999999998877655
No 325
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.22 E-value=0.008 Score=45.72 Aligned_cols=36 Identities=25% Similarity=0.162 Sum_probs=26.5
Q ss_pred HHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 142 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 142 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+++..... .-..+.|+|..|+|||||++.+..-.
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444444443 35689999999999999999987654
No 326
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.017 Score=49.52 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++++|..|+||||++..+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999886653
No 327
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.0042 Score=48.87 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999997765
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.21 E-value=0.0042 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+....
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998864
No 329
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.21 E-value=0.0042 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.717 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999987765
No 330
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.21 E-value=0.0071 Score=50.34 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|.+..++.+.-.+.+.+..-+-+.|..|+||||||+.+-+-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3478999999888866665555668899999999999999985543
No 331
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.21 E-value=0.0039 Score=45.70 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.++|.+|+|||||++.+.+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 332
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.21 E-value=0.008 Score=46.15 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+....|+|+|.+|+|||||...+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 446789999999999999999988763
No 333
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=96.21 E-value=0.0042 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.772 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|.|-||+||||++..+-...
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~L 26 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAY 26 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 689999999999999999987766
No 334
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.20 E-value=0.0091 Score=49.27 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-..|.++|+.|+||||+++.+....
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 367789999999999999999998765
No 335
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.20 E-value=0.0049 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..|.|+|+.|+||||+++.+-...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358889999999999999998875
No 336
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.20 E-value=0.0044 Score=45.24 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.|+|.+|+|||||+..+.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987654
No 337
>PLN02924 thymidylate kinase
Probab=96.20 E-value=0.015 Score=45.54 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAK 208 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 208 (216)
.-..|+|-|..|+||||+++.+.+.. .. ..+....+=..+......+.+++++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l-~~-~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFL-KG-LGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCceeeeCCCCCChHHHHHHHHHh
Confidence 34689999999999999999999988 43 33554433333333344555555554
No 338
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.20 E-value=0.0044 Score=48.79 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 339
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.20 E-value=0.0043 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.|+|.+|+|||||++.+.+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987654
No 340
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.0077 Score=53.82 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=39.3
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.|.+++..+.+. .+-++|+.|+||||+|+.+....
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999887655 46899999999999999987765
No 341
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.19 E-value=0.0043 Score=48.81 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998865
No 342
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.19 E-value=0.0041 Score=49.56 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.++|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37789999999999999986543
No 343
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.19 E-value=0.0051 Score=48.09 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|+|.|+.|+||||+++.+..+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998755
No 344
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.19 E-value=0.0046 Score=47.94 Aligned_cols=26 Identities=38% Similarity=0.327 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 345
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.18 E-value=0.0045 Score=48.67 Aligned_cols=26 Identities=42% Similarity=0.473 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 346
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.18 E-value=0.0041 Score=49.03 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998754
No 347
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.17 E-value=0.0041 Score=45.50 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=18.2
Q ss_pred EEEEeCCCCcHHHHHHHHH
Q 041535 157 VGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~ 175 (216)
|+++|..|+|||||...+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999999999
No 348
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.17 E-value=0.0044 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|+|-|+.|+||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 349
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.17 E-value=0.0044 Score=49.52 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=38.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEE-----EEeCCccCHHHHHHHHHHHcCCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIW-----VVVSKDLQLEKIQECVAKKIGLFN 214 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~w-----v~vs~~~~~~~i~~~i~~~l~~~~ 214 (216)
.-.++++||..|+|||||++.+-.=. +..+..+.| ..++ .....+-..++++.+|++.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~ 100 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPE 100 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCH
Confidence 56799999999999999999997755 222222222 1122 2334556778888888764
No 350
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.0089 Score=54.09 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=39.1
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+..|.+++..+.+. -+-++|..|+||||+|+.+....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 35799999999999999877644 67899999999999999886653
No 351
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.0077 Score=54.33 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=38.6
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+..|.+.+..+.+. .+-++|..|+||||+|+.+.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999877654 45789999999999999987665
No 352
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.17 E-value=0.0045 Score=45.10 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 041535 157 VGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~ 177 (216)
|.|+|+.|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 353
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.16 E-value=0.0042 Score=49.98 Aligned_cols=22 Identities=36% Similarity=0.774 Sum_probs=18.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 041535 156 IVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
+|+|.|-||+||||++-.+-..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~ 23 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVA 23 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHH
Confidence 6889999999999987775443
No 354
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.16 E-value=0.0045 Score=47.63 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~ 176 (216)
+++|+|..|+|||||++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 355
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0047 Score=48.93 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998764
No 356
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.16 E-value=0.0051 Score=54.61 Aligned_cols=27 Identities=37% Similarity=0.536 Sum_probs=24.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++..+|+|.|..|+||||||+.+....
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 468899999999999999999998764
No 357
>PLN02165 adenylate isopentenyltransferase
Probab=96.16 E-value=0.0047 Score=51.13 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.0
Q ss_pred ccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 150 MEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 150 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....-.+|+|+|+.|+||||||..+....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 44566799999999999999999988875
No 358
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.15 E-value=0.0051 Score=40.74 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998876
No 359
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.0045 Score=49.24 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34799999999999999999998843
No 360
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.15 E-value=0.0081 Score=53.87 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=39.4
Q ss_pred CCccccHHHHHHHHHHhccCCce-EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.|.+.+..+.+. -+-++|+.|+||||+|+.+.+..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999877644 68889999999999999987755
No 361
>PRK10908 cell division protein FtsE; Provisional
Probab=96.15 E-value=0.0049 Score=48.17 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998764
No 362
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.14 E-value=0.0047 Score=48.89 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999875
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.14 E-value=0.0057 Score=50.62 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|+++|++|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999999998766
No 364
>PRK14532 adenylate kinase; Provisional
Probab=96.14 E-value=0.0051 Score=46.73 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|-|+|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999997765
No 365
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0049 Score=48.85 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998764
No 366
>PRK01184 hypothetical protein; Provisional
Probab=96.14 E-value=0.0049 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|+|+|+.|+||||+++. ....
T Consensus 2 ~~i~l~G~~GsGKsT~a~~-~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI-AREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHHH-HHHc
Confidence 4899999999999999874 4443
No 367
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.14 E-value=0.0075 Score=54.33 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=38.5
Q ss_pred CCccccHHHHHHHHHHhccC-----CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMED-----TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~-----~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++++..++... ..+++.++|+.|+||||+++.+....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789998899999888653 34579999999999999999998765
No 368
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.14 E-value=0.014 Score=54.60 Aligned_cols=46 Identities=30% Similarity=0.415 Sum_probs=37.0
Q ss_pred CCccccHHHHHHHHHHhcc-------C--CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------D--TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+.+.+.. . ...++-++|+.|+|||+||+.+.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999888888877752 1 23578899999999999999999865
No 369
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.13 E-value=0.0051 Score=47.30 Aligned_cols=26 Identities=42% Similarity=0.583 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998865
No 370
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.13 E-value=0.0093 Score=51.11 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=35.2
Q ss_pred CCccccHHHHHHHHHHhcc-------C---------CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------D---------TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+...+.. . ..+-+-++|+.|+|||+||+.+....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999988877555421 0 23568899999999999999998765
No 371
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.13 E-value=0.0059 Score=44.79 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.++|.+|+|||||+..+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999988764
No 372
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0051 Score=47.01 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|.|||||++.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 373
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.12 E-value=0.0048 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..-|.|+|.+|+|||||+..+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 356889999999999999998653
No 374
>PRK15453 phosphoribulokinase; Provisional
Probab=96.12 E-value=0.0065 Score=49.15 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|.|.+|+||||+++.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999887544
No 375
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.12 E-value=0.026 Score=44.69 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=37.5
Q ss_pred CCccccHHHHHHHHHHh----ccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCV----MEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|.+.+++.|++-. .+....-+-+||..|+|||+|++.+.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 45799999988877643 33466677789999999999999999877
No 376
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.12 E-value=0.0053 Score=47.12 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998864
No 377
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.11 E-value=0.0051 Score=49.38 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 378
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.11 E-value=0.0055 Score=45.98 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998764
No 379
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.11 E-value=0.0051 Score=47.85 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998754
No 380
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.11 E-value=0.0052 Score=47.61 Aligned_cols=26 Identities=38% Similarity=0.364 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 381
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.11 E-value=0.0052 Score=47.52 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999998864
No 382
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.11 E-value=0.0053 Score=47.45 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999998753
No 383
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.02 Score=48.63 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=36.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCC--CCCcEEEEEEeCCccC--HHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSP--NHFDFVIWVVVSKDLQ--LEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~--~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~ 213 (216)
..++|.++|..|+||||.+..+.... ... .+-..++-|+. ++|. ..+-++...+.+|+|
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~-~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvp 235 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY-GINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIP 235 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcc
Confidence 45799999999999999999887765 211 11123333443 3433 333366666666664
No 384
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.11 E-value=0.0053 Score=48.40 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|+|++|+||||+|+.+....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998875
No 385
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0052 Score=49.02 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|+|||||++.+..-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999853
No 386
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.10 E-value=0.0052 Score=48.05 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 387
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.10 E-value=0.0071 Score=55.77 Aligned_cols=45 Identities=31% Similarity=0.367 Sum_probs=36.1
Q ss_pred CccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++.|.+..++.+.+.+.- ...+-+-++|+.|+||||||+.+.+..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 367999888888777631 234568899999999999999999876
No 388
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.10 E-value=0.011 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..|+|.|..|+|||||++.+.+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998874
No 389
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0054 Score=48.07 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+-..|+|+|..|.|||||.+.+..-.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc
Confidence 56689999999999999999998744
No 390
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.09 E-value=0.0053 Score=49.09 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998764
No 391
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.09 E-value=0.012 Score=49.06 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=41.1
Q ss_pred CCccccHHHHHHHHHHhcc------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.++.++++++.+.. ..-+|+-.+|+.|.|||||+..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998864 468899999999999999999998876
No 392
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.011 Score=50.46 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=37.5
Q ss_pred CCccccHHHHHHHHHHhccCC----------ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDT----------IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~----------~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++++|.+..++.|.+.+..+. ..-+-++|+.|+||||+|..+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999999999987653 4557799999999999999986543
No 393
>PRK14531 adenylate kinase; Provisional
Probab=96.08 E-value=0.0063 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..|.|+|++|+||||+++.+....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998776
No 394
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.08 E-value=0.0049 Score=46.69 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
....|+|+|.+|+|||||+..+.+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455699999999999999998864
No 395
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.08 E-value=0.0056 Score=45.68 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998865
No 396
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=96.08 E-value=0.0049 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|+|+|..|+|||||...+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 397
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=96.08 E-value=0.0049 Score=50.52 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|+|-||+||||++..+..-.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~L 24 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMM 24 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999998876654
No 398
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.07 E-value=0.0045 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.|+|.+|+|||||+..+.+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 47899999999999999987654
No 399
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.07 E-value=0.0054 Score=45.23 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 041535 157 VGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~ 177 (216)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999877654
No 400
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0054 Score=48.83 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998754
No 401
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0055 Score=48.83 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.-.+++|+|..|.|||||++.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999999964
No 402
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.07 E-value=0.0053 Score=48.82 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 56689999999999999999997644
No 403
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.06 E-value=0.0056 Score=48.32 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 56689999999999999999998754
No 404
>PRK09183 transposase/IS protein; Provisional
Probab=96.06 E-value=0.0061 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-..+.|+|+.|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999997765
No 405
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.06 E-value=0.0059 Score=45.03 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 041535 157 VGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~ 177 (216)
|.|+|..|+|||||...+...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 689999999999999998653
No 406
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.06 E-value=0.0051 Score=51.32 Aligned_cols=25 Identities=44% Similarity=0.477 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.++++.|+.|+|||||.+.|..=
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999653
No 407
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.05 E-value=0.013 Score=48.72 Aligned_cols=36 Identities=19% Similarity=0.471 Sum_probs=28.4
Q ss_pred HHHHHHhc--cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 143 ERVWSCVM--EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 143 ~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+++.+. .....+|+|.|.+|+|||||+..+....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555554 2568899999999999999999977765
No 408
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.04 E-value=0.006 Score=44.42 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45789999999999999999998765
No 409
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.04 E-value=0.0058 Score=47.45 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.++...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998865
No 410
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0057 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+....
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999998753
No 411
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0056 Score=47.21 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC
Confidence 45699999999999999999998765
No 412
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.04 E-value=0.0063 Score=45.27 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 413
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.03 E-value=0.0058 Score=48.44 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 414
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0058 Score=48.77 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 55789999999999999999998764
No 415
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.03 E-value=0.0062 Score=46.02 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998864
No 416
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.03 E-value=0.0059 Score=48.27 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45799999999999999999998754
No 417
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0063 Score=45.68 Aligned_cols=26 Identities=42% Similarity=0.522 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998854
No 418
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0063 Score=45.57 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 56689999999999999999998865
No 419
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.02 E-value=0.0062 Score=45.91 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998865
No 420
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.01 E-value=0.0054 Score=45.34 Aligned_cols=21 Identities=52% Similarity=0.835 Sum_probs=19.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 041535 157 VGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~ 177 (216)
|+|+|..|+|||||+..+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999754
No 421
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.0061 Score=48.83 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|+|||||++.+..-
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999764
No 422
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.00 E-value=0.0063 Score=46.08 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 423
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0059 Score=48.34 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998864
No 424
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.00 E-value=0.0062 Score=48.19 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 425
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.00 E-value=0.006 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 426
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.00 E-value=0.012 Score=44.50 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=26.9
Q ss_pred HHHHHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 142 FERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 142 ~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..++.+++-. .....|.|+|.+|+|||||+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456665422 45567889999999999999998764
No 427
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0061 Score=48.56 Aligned_cols=24 Identities=46% Similarity=0.617 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.-.+++|+|..|+|||||++.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999964
No 428
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.00 E-value=0.0062 Score=48.44 Aligned_cols=26 Identities=42% Similarity=0.425 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 429
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.0055 Score=49.30 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45699999999999999999998754
No 430
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.99 E-value=0.0066 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
+..+.+|+|..|.|||||+.+++.
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICF 47 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999973
No 431
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.99 E-value=0.0072 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|-++|.+|+||||+|+.+..+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999987664
No 432
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.99 E-value=0.006 Score=47.90 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999998754
No 433
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.99 E-value=0.018 Score=53.91 Aligned_cols=44 Identities=16% Similarity=0.367 Sum_probs=39.3
Q ss_pred ccccHHHHHHHHHHhcc---CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 135 VVGLQSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++||+.+.+.|...+.. ....++.+.|..|+|||+|++.|....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i 48 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPI 48 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHH
Confidence 68999999999888864 567799999999999999999999976
No 434
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.99 E-value=0.0062 Score=44.57 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=18.7
Q ss_pred EEeCCCCcHHHHHHHHHHhc
Q 041535 159 LYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 159 I~G~gGvGKTtLa~~v~~~~ 178 (216)
|+|++|+||||+|+.+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999876
No 435
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.01 Score=54.33 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=35.0
Q ss_pred CccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++||++++.++++.|....-.---.+|-+|+|||+++.-+..+.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI 215 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI 215 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH
Confidence 469999999999999986433333467999999999877665543
No 436
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.99 E-value=0.0062 Score=44.61 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 041535 156 IVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.|.|+|.+|+|||||+..+.+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999886653
No 437
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.99 E-value=0.0063 Score=48.51 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998753
No 438
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.97 E-value=0.0064 Score=47.36 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 56799999999999999999998754
No 439
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=95.97 E-value=0.0064 Score=44.35 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.|+|.+|+|||||...+.+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999998887754
No 440
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.97 E-value=0.0063 Score=44.96 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999988764
No 441
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.0066 Score=47.00 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 442
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0064 Score=48.75 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|+|||||++.+..-
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5678999999999999999999865
No 443
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.96 E-value=0.0068 Score=51.71 Aligned_cols=26 Identities=31% Similarity=0.467 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-+|||.|..|+|||||++.+..-.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999997654
No 444
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.96 E-value=0.0068 Score=44.37 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~ 176 (216)
+|+|+|..|+|||||...+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 799999999999999999874
No 445
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0062 Score=49.40 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 446
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.96 E-value=0.0068 Score=46.65 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998764
No 447
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0065 Score=49.05 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999998764
No 448
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.012 Score=52.77 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.|.+++..+.+ ..+-++|..|+||||+|+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999988877654 456789999999999999988765
No 449
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.96 E-value=0.0061 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.756 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|+|.|-||+||||++-.+-...
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~l 24 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVAL 24 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 68999999999999887755444
No 450
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.95 E-value=0.0069 Score=47.81 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+....
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 56799999999999999999998864
No 451
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0068 Score=47.71 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998764
No 452
>PRK02496 adk adenylate kinase; Provisional
Probab=95.95 E-value=0.0083 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|+|++|+||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987654
No 453
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.95 E-value=0.0065 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.|+|.+|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988764
No 454
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.95 E-value=0.0067 Score=48.58 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.++.-.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56699999999999999999999864
No 455
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.95 E-value=0.0082 Score=45.49 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|.|.|..|+||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998875
No 456
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0065 Score=49.09 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 457
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.94 E-value=0.016 Score=47.64 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|+|.+|+|||||+..+....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999987754
No 458
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.94 E-value=0.0076 Score=47.95 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=32.7
Q ss_pred HHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEe
Q 041535 142 FERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVV 193 (216)
Q Consensus 142 ~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~v 193 (216)
+..+.+.... .....+-++|.+|+|||+||..+.+.. . ..-..++.+++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l-~--~~g~~v~~it~ 135 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL-L--LRGKSVLIITV 135 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEH
Confidence 3444444432 234578899999999999999999987 2 22335566654
No 459
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.0065 Score=50.52 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45789999999999999999998754
No 460
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.94 E-value=0.0068 Score=48.52 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+....
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998865
No 461
>PRK06526 transposase; Provisional
Probab=95.93 E-value=0.007 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...-+-++|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999997765
No 462
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0066 Score=49.51 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 463
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.93 E-value=0.0066 Score=48.99 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 464
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.93 E-value=0.017 Score=44.59 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
++++|.+..+..+.-...+ ..-+-++|..|+|||+||+.+-.-
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 3578888877777666654 357889999999999999998653
No 465
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0063 Score=49.14 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998754
No 466
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0069 Score=48.94 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56799999999999999999998753
No 467
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.93 E-value=0.0084 Score=45.54 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
+.+.-|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999985
No 468
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.92 E-value=0.0069 Score=48.80 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|.|-||+||||++-.+-...
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~l 26 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAF 26 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999887765554
No 469
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.92 E-value=0.0064 Score=44.68 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~ 176 (216)
-|.|+|.+|+|||||+..+.+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998864
No 470
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.92 E-value=0.0068 Score=48.32 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 471
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.92 E-value=0.0069 Score=44.77 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 041535 156 IVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.|.++|.+|+|||||.+.+.+.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888664
No 472
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.92 E-value=0.013 Score=41.44 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.||...|.=|+||||+++.+....
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345899999999999999999998876
No 473
>PRK13973 thymidylate kinase; Provisional
Probab=95.91 E-value=0.027 Score=43.79 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..|.|-|..|+||||+++.++...
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l 27 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERL 27 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999988
No 474
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.007 Score=48.27 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998654
No 475
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.0071 Score=48.16 Aligned_cols=25 Identities=44% Similarity=0.582 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|.|||||++.+..-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999853
No 476
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.91 E-value=0.014 Score=47.12 Aligned_cols=43 Identities=28% Similarity=0.412 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 136 VGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 136 vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|...+.-+.+..+....-.+|.|.|..|+||||++..+.+..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 4555544444555555566789999999999999999875543
No 477
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.91 E-value=0.0073 Score=47.04 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.++.-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45699999999999999999999764
No 478
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.0072 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45789999999999999999998753
No 479
>PRK14528 adenylate kinase; Provisional
Probab=95.90 E-value=0.0084 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999997654
No 480
>PF13245 AAA_19: Part of AAA domain
Probab=95.90 E-value=0.022 Score=36.71 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=17.9
Q ss_pred CceEEEEEeCCCCcHH-HHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKT-TLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKT-tLa~~v~~~ 177 (216)
+-++..|.|.+|.||| |++..+..-
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567778999999999 455544443
No 481
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0073 Score=47.59 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45789999999999999999998764
No 482
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.90 E-value=0.026 Score=45.31 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=29.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSK 195 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 195 (216)
.-+++-|.|.+|+|||+|+.++.... -..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ---ASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecC
Confidence 57899999999999999999974443 11234667777654
No 483
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.90 E-value=0.018 Score=49.94 Aligned_cols=59 Identities=29% Similarity=0.394 Sum_probs=35.8
Q ss_pred CCccccHHH--HHHHHHHhccC-CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEEe
Q 041535 133 TSVVGLQST--FERVWSCVMED-TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVV 193 (216)
Q Consensus 133 ~~~vG~~~~--~~~l~~~L~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~-~~~wv~v 193 (216)
+.++|-... ...+.+..... ...-+-|+|..|+|||+|++.+.+.. . +.+.+ .+++++.
T Consensus 106 nFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l-~-~~~~~~~v~yi~~ 168 (440)
T PRK14088 106 NFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYV-V-QNEPDLRVMYITS 168 (440)
T ss_pred ccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHH-H-HhCCCCeEEEEEH
Confidence 335674332 22333333322 34568999999999999999999986 2 22233 3555553
No 484
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.90 E-value=0.0076 Score=46.73 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.|+|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999987654
No 485
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.90 E-value=0.0073 Score=44.80 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.++|.+|+|||||++.+.+..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999976554
No 486
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.89 E-value=0.0097 Score=46.58 Aligned_cols=46 Identities=33% Similarity=0.382 Sum_probs=30.2
Q ss_pred CCcccc-HHHHHHHHHHhcc---CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGL-QSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~-~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|. ....-...+.+.. .....+-|+|..|+|||.|++.+++..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445564 3333344444433 235568899999999999999999986
No 487
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.89 E-value=0.0074 Score=46.67 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHH
Q 041535 155 GIVGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~ 175 (216)
.+++|+|..|.|||||...++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 399999999999999999995
No 488
>PRK07429 phosphoribulokinase; Provisional
Probab=95.89 E-value=0.0089 Score=49.65 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...-+|+|.|..|+||||+++.+....
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 356799999999999999999998765
No 489
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.89 E-value=0.0072 Score=48.77 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|+|||||++.+...
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5568999999999999999999765
No 490
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.89 E-value=0.0074 Score=47.01 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHH
Q 041535 154 IGIVGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~ 175 (216)
..+++|+|+.|.|||||...|.
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999999976
No 491
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.89 E-value=0.0076 Score=46.87 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999998764
No 492
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.88 E-value=0.0075 Score=48.16 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45699999999999999999998754
No 493
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.88 E-value=0.0087 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.+|+|+|+.|+||||+++.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998776
No 494
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.88 E-value=0.0075 Score=48.50 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.-.+++|+|..|.|||||++.+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 557899999999999999999985
No 495
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.015 Score=50.45 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=39.1
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+..+.+.+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987765 567889999999999999987654
No 496
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.88 E-value=0.0071 Score=48.19 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|+|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4569999999999999999999874
No 497
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.88 E-value=0.0079 Score=47.13 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 45789999999999999999998765
No 498
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.014 Score=48.55 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=36.2
Q ss_pred ccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 135 VVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+=|.++.+++|.+...- +..+=|-.+|++|.|||-||++|.|+.
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 55788888888776631 367778899999999999999999976
No 499
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.87 E-value=0.0073 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
++++|+|+.|.|||||++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 89999999999999999998753
No 500
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.0077 Score=48.55 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+....
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 56789999999999999999998754
Done!