Query 041535
Match_columns 216
No_of_seqs 176 out of 1468
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.7 1.9E-17 6.6E-22 144.8 9.4 80 133-213 128-214 (549)
2 3qfl_A MLA10; coiled-coil, (CC 99.5 8.1E-14 2.8E-18 97.0 9.0 69 2-77 15-84 (115)
3 1vt4_I APAF-1 related killer D 99.5 2.9E-14 1E-18 130.3 5.7 76 134-210 129-206 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.3 5.2E-12 1.8E-16 111.1 7.1 73 132-206 123-199 (591)
5 3sfz_A APAF-1, apoptotic pepti 99.3 6.1E-12 2.1E-16 118.5 7.4 82 132-213 123-209 (1249)
6 1w5s_A Origin recognition comp 98.7 1.4E-08 4.9E-13 84.9 6.6 80 133-213 22-114 (412)
7 2qby_A CDC6 homolog 1, cell di 98.6 4.2E-08 1.4E-12 81.1 5.6 77 133-212 20-103 (386)
8 1fnn_A CDC6P, cell division co 98.6 4.4E-07 1.5E-11 75.2 10.8 78 133-213 17-101 (389)
9 2qen_A Walker-type ATPase; unk 98.5 1.4E-07 4.9E-12 76.9 7.4 69 133-211 12-86 (350)
10 2v1u_A Cell division control p 98.5 2.7E-07 9.2E-12 76.3 7.9 80 133-213 19-106 (387)
11 2qby_B CDC6 homolog 3, cell di 98.5 2E-07 6.9E-12 77.2 6.4 78 133-210 20-107 (384)
12 2fna_A Conserved hypothetical 98.4 8E-07 2.8E-11 72.5 9.2 67 133-209 13-84 (357)
13 1jbk_A CLPB protein; beta barr 98.3 1.4E-06 4.9E-11 64.4 6.1 46 133-178 22-67 (195)
14 2chg_A Replication factor C sm 98.2 4.1E-06 1.4E-10 63.4 7.2 70 133-204 17-87 (226)
15 2p65_A Hypothetical protein PF 98.2 2.1E-06 7.3E-11 63.3 5.4 46 133-178 22-67 (187)
16 3te6_A Regulatory protein SIR3 98.1 8.7E-06 3E-10 66.1 7.2 76 135-211 22-106 (318)
17 1njg_A DNA polymerase III subu 98.0 8.9E-06 3E-10 62.2 5.2 46 133-178 23-69 (250)
18 1sxj_B Activator 1 37 kDa subu 97.8 1.3E-05 4.5E-10 64.5 4.3 46 133-178 21-66 (323)
19 1iqp_A RFCS; clamp loader, ext 97.8 3.1E-05 1.1E-09 62.4 5.6 46 133-178 25-70 (327)
20 3pxg_A Negative regulator of g 97.6 5.1E-05 1.7E-09 64.9 5.4 46 133-178 180-225 (468)
21 3h4m_A Proteasome-activating n 97.6 5.1E-05 1.7E-09 60.2 5.1 46 133-178 17-75 (285)
22 3bos_A Putative DNA replicatio 97.6 7.1E-05 2.4E-09 57.4 5.8 53 139-194 37-89 (242)
23 3n70_A Transport activator; si 97.6 8.2E-05 2.8E-09 53.1 5.0 45 134-178 2-48 (145)
24 2w58_A DNAI, primosome compone 97.6 9.1E-05 3.1E-09 55.7 5.4 51 141-194 37-91 (202)
25 1sxj_D Activator 1 41 kDa subu 97.6 5.4E-05 1.9E-09 61.7 4.3 46 133-178 37-82 (353)
26 1hqc_A RUVB; extended AAA-ATPa 97.6 0.00013 4.3E-09 58.9 6.4 46 133-178 12-62 (324)
27 3syl_A Protein CBBX; photosynt 97.5 0.00013 4.4E-09 58.5 6.1 45 134-178 32-91 (309)
28 3b9p_A CG5977-PA, isoform A; A 97.5 0.00012 4.2E-09 58.3 5.6 46 133-178 21-78 (297)
29 2chq_A Replication factor C sm 97.5 8.2E-05 2.8E-09 59.7 4.5 46 133-178 17-62 (319)
30 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00014 4.7E-09 56.8 5.7 46 133-178 6-63 (262)
31 3pfi_A Holliday junction ATP-d 97.5 0.00012 3.9E-09 59.6 5.3 46 133-178 29-79 (338)
32 3cf0_A Transitional endoplasmi 97.5 0.00013 4.3E-09 58.7 5.2 46 133-178 15-73 (301)
33 3ec2_A DNA replication protein 97.5 0.0001 3.6E-09 54.4 4.3 41 138-178 19-62 (180)
34 3pvs_A Replication-associated 97.5 9.4E-05 3.2E-09 62.9 4.6 46 133-178 26-74 (447)
35 1rz3_A Hypothetical protein rb 97.5 0.00019 6.5E-09 54.1 5.7 41 138-178 3-46 (201)
36 1sxj_A Activator 1 95 kDa subu 97.4 0.00015 5.3E-09 62.6 5.5 46 133-178 39-101 (516)
37 1jr3_A DNA polymerase III subu 97.4 0.00017 5.9E-09 59.2 5.5 46 133-178 16-62 (373)
38 1sxj_E Activator 1 40 kDa subu 97.4 0.00011 3.7E-09 60.1 4.0 45 133-177 14-59 (354)
39 3d8b_A Fidgetin-like protein 1 97.4 0.00021 7.3E-09 58.8 5.5 46 133-178 84-141 (357)
40 1qvr_A CLPB protein; coiled co 97.4 0.00015 5.3E-09 66.4 5.1 46 133-178 170-215 (854)
41 3c8u_A Fructokinase; YP_612366 97.4 0.00022 7.4E-09 54.1 5.0 38 141-178 7-46 (208)
42 3pxi_A Negative regulator of g 97.4 0.00019 6.5E-09 64.9 5.4 46 133-178 180-225 (758)
43 1ofh_A ATP-dependent HSL prote 97.4 0.00022 7.5E-09 56.9 5.3 46 133-178 15-74 (310)
44 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00028 9.7E-09 63.7 6.1 46 133-178 186-231 (758)
45 3uk6_A RUVB-like 2; hexameric 97.3 0.00032 1.1E-08 57.6 5.9 46 133-178 44-94 (368)
46 1sxj_C Activator 1 40 kDa subu 97.3 0.00025 8.6E-09 57.8 5.2 45 134-178 26-70 (340)
47 1lv7_A FTSH; alpha/beta domain 97.3 0.00024 8.1E-09 55.5 4.7 46 133-178 12-69 (257)
48 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00031 1.1E-08 57.0 5.5 46 133-178 12-69 (322)
49 3eie_A Vacuolar protein sortin 97.3 0.00034 1.1E-08 56.7 5.7 46 133-178 18-75 (322)
50 1in4_A RUVB, holliday junction 97.3 0.00018 6E-09 58.7 4.0 45 134-178 26-75 (334)
51 3lw7_A Adenylate kinase relate 97.3 0.00015 5.1E-09 52.7 3.2 23 155-178 2-24 (179)
52 2hf9_A Probable hydrogenase ni 97.2 0.00044 1.5E-08 52.6 5.6 40 139-178 23-62 (226)
53 1zp6_A Hypothetical protein AT 97.2 0.00021 7.2E-09 53.0 3.5 26 153-178 8-33 (191)
54 3co5_A Putative two-component 97.2 9.8E-05 3.3E-09 52.6 1.6 45 134-178 5-51 (143)
55 1kgd_A CASK, peripheral plasma 97.2 0.00023 7.9E-09 52.6 3.5 25 154-178 5-29 (180)
56 3kb2_A SPBC2 prophage-derived 97.2 0.00025 8.5E-09 51.5 3.6 24 155-178 2-25 (173)
57 4fcw_A Chaperone protein CLPB; 97.2 0.00031 1.1E-08 56.2 4.3 45 134-178 18-71 (311)
58 1n0w_A DNA repair protein RAD5 97.2 0.0016 5.4E-08 50.0 8.1 59 153-213 23-85 (243)
59 3vfd_A Spastin; ATPase, microt 97.1 0.00052 1.8E-08 57.1 5.6 46 133-178 115-172 (389)
60 2bjv_A PSP operon transcriptio 97.1 0.00063 2.1E-08 53.3 5.7 45 134-178 7-53 (265)
61 1kag_A SKI, shikimate kinase I 97.1 0.00024 8.1E-09 51.9 3.0 24 155-178 5-28 (173)
62 2wsm_A Hydrogenase expression/ 97.1 0.00043 1.5E-08 52.5 4.6 44 135-178 11-54 (221)
63 3tr0_A Guanylate kinase, GMP k 97.1 0.00028 9.5E-09 52.9 3.5 25 154-178 7-31 (205)
64 3vaa_A Shikimate kinase, SK; s 97.1 0.0003 1E-08 52.8 3.6 26 153-178 24-49 (199)
65 1d2n_A N-ethylmaleimide-sensit 97.1 0.0007 2.4E-08 53.3 5.8 45 134-178 34-88 (272)
66 3u61_B DNA polymerase accessor 97.1 0.00061 2.1E-08 55.0 5.5 46 133-178 26-72 (324)
67 2x8a_A Nuclear valosin-contain 97.1 0.00057 2E-08 54.2 5.1 46 133-178 10-68 (274)
68 2qp9_X Vacuolar protein sortin 97.1 0.00053 1.8E-08 56.4 5.1 46 133-178 51-108 (355)
69 1qhx_A CPT, protein (chloramph 97.1 0.00035 1.2E-08 51.2 3.6 24 155-178 4-27 (178)
70 3uie_A Adenylyl-sulfate kinase 97.1 0.00043 1.5E-08 52.0 4.1 28 151-178 22-49 (200)
71 2kjq_A DNAA-related protein; s 97.1 0.00031 1.1E-08 50.5 3.2 26 153-178 35-60 (149)
72 4a74_A DNA repair and recombin 97.1 0.0025 8.4E-08 48.4 8.4 58 153-212 24-85 (231)
73 3a00_A Guanylate kinase, GMP k 97.1 0.00029 9.9E-09 52.4 3.0 24 155-178 2-25 (186)
74 1ye8_A Protein THEP1, hypothet 97.1 0.00036 1.2E-08 51.7 3.5 23 156-178 2-24 (178)
75 1ly1_A Polynucleotide kinase; 97.1 0.00039 1.3E-08 50.9 3.6 22 155-176 3-24 (181)
76 3asz_A Uridine kinase; cytidin 97.1 0.00043 1.5E-08 52.2 4.0 26 153-178 5-30 (211)
77 1odf_A YGR205W, hypothetical 3 97.1 0.00071 2.4E-08 54.1 5.4 27 152-178 29-55 (290)
78 2z43_A DNA repair and recombin 97.1 0.0021 7.1E-08 52.1 8.2 59 153-213 106-168 (324)
79 2r62_A Cell division protease 97.1 0.00026 9E-09 55.5 2.8 46 133-178 11-68 (268)
80 2zan_A Vacuolar protein sortin 97.0 0.00076 2.6E-08 57.2 5.7 46 133-178 134-191 (444)
81 1knq_A Gluconate kinase; ALFA/ 97.0 0.00045 1.5E-08 50.6 3.8 25 154-178 8-32 (175)
82 2bdt_A BH3686; alpha-beta prot 97.0 0.00043 1.5E-08 51.4 3.7 24 155-178 3-26 (189)
83 4eun_A Thermoresistant glucoki 97.0 0.00042 1.4E-08 52.1 3.6 27 152-178 27-53 (200)
84 1nks_A Adenylate kinase; therm 97.0 0.00049 1.7E-08 50.9 3.8 24 155-178 2-25 (194)
85 4gp7_A Metallophosphoesterase; 97.0 0.00033 1.1E-08 51.4 2.8 23 153-175 8-30 (171)
86 3t61_A Gluconokinase; PSI-biol 97.0 0.00036 1.2E-08 52.4 3.1 25 154-178 18-42 (202)
87 2j41_A Guanylate kinase; GMP, 97.0 0.00043 1.5E-08 51.9 3.5 25 154-178 6-30 (207)
88 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00099 3.4E-08 54.7 5.8 43 136-178 2-48 (359)
89 2cvh_A DNA repair and recombin 97.0 0.0013 4.4E-08 49.7 6.2 53 153-212 19-71 (220)
90 1ixz_A ATP-dependent metallopr 97.0 0.0008 2.7E-08 52.4 5.1 46 133-178 16-73 (254)
91 1ojl_A Transcriptional regulat 97.0 0.00084 2.9E-08 54.0 5.3 46 133-178 2-49 (304)
92 1lvg_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 52.3 3.0 25 154-178 4-28 (198)
93 3hws_A ATP-dependent CLP prote 97.0 0.00092 3.2E-08 55.0 5.6 44 135-178 17-75 (363)
94 3trf_A Shikimate kinase, SK; a 97.0 0.00049 1.7E-08 50.8 3.6 25 154-178 5-29 (185)
95 2if2_A Dephospho-COA kinase; a 97.0 0.00049 1.7E-08 51.7 3.6 22 155-176 2-23 (204)
96 3e70_C DPA, signal recognition 97.0 0.004 1.4E-07 50.6 9.1 27 152-178 127-153 (328)
97 3fwy_A Light-independent proto 97.0 0.00049 1.7E-08 55.7 3.6 27 152-178 46-72 (314)
98 2jaq_A Deoxyguanosine kinase; 97.0 0.00052 1.8E-08 51.2 3.6 23 156-178 2-24 (205)
99 2px0_A Flagellar biosynthesis 97.0 0.0016 5.3E-08 52.3 6.5 26 153-178 104-129 (296)
100 3tau_A Guanylate kinase, GMP k 96.9 0.00051 1.8E-08 52.0 3.5 27 152-178 6-32 (208)
101 1kht_A Adenylate kinase; phosp 96.9 0.00055 1.9E-08 50.6 3.6 24 155-178 4-27 (192)
102 1uf9_A TT1252 protein; P-loop, 96.9 0.00069 2.4E-08 50.6 4.1 25 152-176 6-30 (203)
103 1znw_A Guanylate kinase, GMP k 96.9 0.00054 1.8E-08 51.8 3.5 26 153-178 19-44 (207)
104 1cke_A CK, MSSA, protein (cyti 96.9 0.00055 1.9E-08 52.2 3.6 23 155-177 6-28 (227)
105 2rhm_A Putative kinase; P-loop 96.9 0.00074 2.5E-08 50.0 4.1 25 154-178 5-29 (193)
106 3iij_A Coilin-interacting nucl 96.9 0.00056 1.9E-08 50.3 3.4 25 154-178 11-35 (180)
107 2bbw_A Adenylate kinase 4, AK4 96.9 0.00062 2.1E-08 52.9 3.7 26 153-178 26-51 (246)
108 4b4t_M 26S protease regulatory 96.9 0.00081 2.8E-08 56.8 4.6 46 133-178 181-239 (434)
109 1iy2_A ATP-dependent metallopr 96.9 0.0011 3.7E-08 52.4 5.2 46 133-178 40-97 (278)
110 2qor_A Guanylate kinase; phosp 96.9 0.00056 1.9E-08 51.5 3.4 26 153-178 11-36 (204)
111 2r44_A Uncharacterized protein 96.9 0.00074 2.5E-08 54.7 4.2 44 133-178 27-70 (331)
112 2qt1_A Nicotinamide riboside k 96.9 0.00073 2.5E-08 50.9 3.9 25 153-177 20-44 (207)
113 4b4t_K 26S protease regulatory 96.9 0.00087 3E-08 56.5 4.7 46 133-178 172-230 (428)
114 1l8q_A Chromosomal replication 96.9 0.0018 6.1E-08 52.3 6.4 37 142-178 23-61 (324)
115 1jjv_A Dephospho-COA kinase; P 96.9 0.0006 2E-08 51.3 3.4 22 155-176 3-24 (206)
116 1um8_A ATP-dependent CLP prote 96.9 0.0014 4.8E-08 54.1 5.8 46 133-178 21-96 (376)
117 1ex7_A Guanylate kinase; subst 96.9 0.00052 1.8E-08 51.3 2.9 24 155-178 2-25 (186)
118 3aez_A Pantothenate kinase; tr 96.9 0.00075 2.6E-08 54.5 4.0 27 152-178 88-114 (312)
119 2ze6_A Isopentenyl transferase 96.9 0.00069 2.4E-08 53.0 3.7 24 155-178 2-25 (253)
120 2yvu_A Probable adenylyl-sulfa 96.9 0.00087 3E-08 49.6 4.0 26 153-178 12-37 (186)
121 1z6g_A Guanylate kinase; struc 96.9 0.00057 1.9E-08 52.2 3.1 26 153-178 22-47 (218)
122 1htw_A HI0065; nucleotide-bind 96.9 0.00079 2.7E-08 48.9 3.7 27 152-178 31-57 (158)
123 1via_A Shikimate kinase; struc 96.9 0.00062 2.1E-08 49.9 3.1 24 155-178 5-28 (175)
124 1tev_A UMP-CMP kinase; ploop, 96.9 0.00081 2.8E-08 49.8 3.8 25 154-178 3-27 (196)
125 2jeo_A Uridine-cytidine kinase 96.8 0.00071 2.4E-08 52.5 3.5 26 153-178 24-49 (245)
126 2i1q_A DNA repair and recombin 96.8 0.0036 1.2E-07 50.6 7.8 59 153-213 97-169 (322)
127 3lda_A DNA repair protein RAD5 96.8 0.0039 1.3E-07 52.1 8.2 59 153-213 177-239 (400)
128 4b4t_L 26S protease subunit RP 96.8 0.0011 3.6E-08 56.1 4.7 46 133-178 181-239 (437)
129 3hr8_A Protein RECA; alpha and 96.8 0.0015 5E-08 53.8 5.5 53 153-213 60-112 (356)
130 2c95_A Adenylate kinase 1; tra 96.8 0.00089 3E-08 49.7 3.8 26 153-178 8-33 (196)
131 1ukz_A Uridylate kinase; trans 96.8 0.00092 3.2E-08 50.1 4.0 27 152-178 13-39 (203)
132 1v5w_A DMC1, meiotic recombina 96.8 0.0049 1.7E-07 50.3 8.4 59 153-213 121-183 (343)
133 3cm0_A Adenylate kinase; ATP-b 96.8 0.00094 3.2E-08 49.2 3.7 24 155-178 5-28 (186)
134 2bwj_A Adenylate kinase 5; pho 96.8 0.0009 3.1E-08 49.8 3.7 25 154-178 12-36 (199)
135 1pzn_A RAD51, DNA repair and r 96.8 0.0036 1.2E-07 51.3 7.5 58 153-212 130-191 (349)
136 1y63_A LMAJ004144AAA protein; 96.8 0.0009 3.1E-08 49.5 3.6 25 153-177 9-33 (184)
137 1qf9_A UMP/CMP kinase, protein 96.8 0.001 3.5E-08 49.1 3.9 25 154-178 6-30 (194)
138 2iyv_A Shikimate kinase, SK; t 96.8 0.00074 2.5E-08 49.8 3.0 24 155-178 3-26 (184)
139 4e22_A Cytidylate kinase; P-lo 96.8 0.00089 3.1E-08 52.3 3.6 25 153-177 26-50 (252)
140 3t15_A Ribulose bisphosphate c 96.8 0.0012 4E-08 52.8 4.3 26 153-178 35-60 (293)
141 2z4s_A Chromosomal replication 96.8 0.0011 3.6E-08 56.2 4.2 37 142-178 117-154 (440)
142 1zuh_A Shikimate kinase; alpha 96.8 0.00097 3.3E-08 48.4 3.5 26 153-178 6-31 (168)
143 1s96_A Guanylate kinase, GMP k 96.8 0.00091 3.1E-08 51.2 3.5 26 153-178 15-40 (219)
144 2plr_A DTMP kinase, probable t 96.8 0.001 3.5E-08 49.9 3.7 24 155-178 5-28 (213)
145 2i3b_A HCR-ntpase, human cance 96.7 0.0008 2.7E-08 50.3 3.0 24 155-178 2-25 (189)
146 3hu3_A Transitional endoplasmi 96.7 0.0015 5.1E-08 56.1 5.1 45 134-178 205-262 (489)
147 1e6c_A Shikimate kinase; phosp 96.7 0.00083 2.8E-08 48.8 3.1 24 155-178 3-26 (173)
148 3dm5_A SRP54, signal recogniti 96.7 0.0048 1.6E-07 52.2 8.0 26 153-178 99-124 (443)
149 1g8p_A Magnesium-chelatase 38 96.7 0.00066 2.3E-08 55.2 2.7 45 134-178 25-69 (350)
150 3nbx_X ATPase RAVA; AAA+ ATPas 96.7 0.0015 5E-08 56.2 5.0 44 133-178 22-65 (500)
151 1gvn_B Zeta; postsegregational 96.7 0.0018 6.2E-08 51.6 5.2 26 153-178 32-57 (287)
152 3ney_A 55 kDa erythrocyte memb 96.7 0.001 3.6E-08 50.1 3.6 26 153-178 18-43 (197)
153 1uj2_A Uridine-cytidine kinase 96.7 0.0012 4E-08 51.5 4.0 27 152-178 20-46 (252)
154 1gtv_A TMK, thymidylate kinase 96.7 0.00053 1.8E-08 51.7 1.9 24 155-178 1-24 (214)
155 1xjc_A MOBB protein homolog; s 96.7 0.0011 3.9E-08 48.6 3.6 26 153-178 3-28 (169)
156 3tqc_A Pantothenate kinase; bi 96.7 0.0021 7.1E-08 52.1 5.5 26 153-178 91-116 (321)
157 2pbr_A DTMP kinase, thymidylat 96.7 0.0011 3.7E-08 49.0 3.6 23 156-178 2-24 (195)
158 4b4t_J 26S protease regulatory 96.7 0.0013 4.3E-08 55.0 4.2 46 133-178 148-206 (405)
159 1rj9_A FTSY, signal recognitio 96.7 0.0011 3.7E-08 53.4 3.7 26 153-178 101-126 (304)
160 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0012 4.2E-08 51.7 4.0 24 154-177 4-27 (260)
161 2ehv_A Hypothetical protein PH 96.7 0.00099 3.4E-08 51.4 3.3 23 153-175 29-51 (251)
162 2p5t_B PEZT; postsegregational 96.7 0.0015 5.1E-08 51.0 4.4 40 139-178 12-56 (253)
163 3tif_A Uncharacterized ABC tra 96.7 0.00095 3.2E-08 51.7 3.2 26 153-178 30-55 (235)
164 2onk_A Molybdate/tungstate ABC 96.7 0.0011 3.7E-08 51.6 3.5 26 152-178 23-48 (240)
165 2xxa_A Signal recognition part 96.7 0.0065 2.2E-07 51.3 8.5 26 153-178 99-124 (433)
166 2c9o_A RUVB-like 1; hexameric 96.7 0.0021 7.3E-08 54.6 5.6 46 133-178 37-87 (456)
167 2pt5_A Shikimate kinase, SK; a 96.7 0.0012 4.1E-08 47.8 3.5 23 156-178 2-24 (168)
168 2pcj_A ABC transporter, lipopr 96.7 0.001 3.5E-08 51.1 3.2 26 153-178 29-54 (224)
169 4b4t_H 26S protease regulatory 96.7 0.0016 5.3E-08 55.3 4.5 45 134-178 210-267 (467)
170 2wwf_A Thymidilate kinase, put 96.6 0.0013 4.6E-08 49.4 3.7 25 154-178 10-34 (212)
171 2grj_A Dephospho-COA kinase; T 96.6 0.0014 4.9E-08 49.1 3.8 26 153-178 11-36 (192)
172 2cdn_A Adenylate kinase; phosp 96.6 0.0013 4.5E-08 49.2 3.6 26 153-178 19-44 (201)
173 2ce7_A Cell division protein F 96.6 0.0021 7.2E-08 54.9 5.2 46 133-178 16-73 (476)
174 1nn5_A Similar to deoxythymidy 96.6 0.0015 5.2E-08 49.2 3.9 25 154-178 9-33 (215)
175 3kl4_A SRP54, signal recogniti 96.6 0.0055 1.9E-07 51.7 7.6 26 153-178 96-121 (433)
176 1sq5_A Pantothenate kinase; P- 96.6 0.0016 5.4E-08 52.5 4.1 27 152-178 78-104 (308)
177 3b9q_A Chloroplast SRP recepto 96.6 0.0013 4.5E-08 52.8 3.6 26 153-178 99-124 (302)
178 2vli_A Antibiotic resistance p 96.6 0.00084 2.9E-08 49.3 2.3 25 154-178 5-29 (183)
179 2z0h_A DTMP kinase, thymidylat 96.6 0.0014 4.9E-08 48.6 3.6 23 156-178 2-24 (197)
180 2f1r_A Molybdopterin-guanine d 96.6 0.00082 2.8E-08 49.5 2.2 24 155-178 3-26 (171)
181 2zr9_A Protein RECA, recombina 96.6 0.0025 8.6E-08 52.3 5.3 44 153-199 60-103 (349)
182 3lnc_A Guanylate kinase, GMP k 96.6 0.00075 2.6E-08 51.8 2.0 25 153-177 26-51 (231)
183 2pez_A Bifunctional 3'-phospho 96.6 0.0016 5.4E-08 47.8 3.6 25 154-178 5-29 (179)
184 2cbz_A Multidrug resistance-as 96.6 0.0013 4.3E-08 51.0 3.2 26 153-178 30-55 (237)
185 1b0u_A Histidine permease; ABC 96.6 0.0012 4.2E-08 51.9 3.2 26 153-178 31-56 (262)
186 2yhs_A FTSY, cell division pro 96.6 0.0026 8.8E-08 54.5 5.3 26 153-178 292-317 (503)
187 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0014 4.7E-08 51.2 3.4 25 153-177 28-52 (250)
188 1zd8_A GTP:AMP phosphotransfer 96.6 0.0016 5.4E-08 49.8 3.7 25 154-178 7-31 (227)
189 3b85_A Phosphate starvation-in 96.6 0.00095 3.3E-08 50.7 2.3 24 154-177 22-45 (208)
190 3gfo_A Cobalt import ATP-bindi 96.5 0.0013 4.5E-08 52.2 3.2 26 153-178 33-58 (275)
191 1m7g_A Adenylylsulfate kinase; 96.5 0.0018 6E-08 49.0 3.8 27 152-178 23-49 (211)
192 1ji0_A ABC transporter; ATP bi 96.5 0.0012 4.1E-08 51.3 2.8 26 153-178 31-56 (240)
193 3fb4_A Adenylate kinase; psych 96.5 0.0016 5.6E-08 49.2 3.5 23 156-178 2-24 (216)
194 2zu0_C Probable ATP-dependent 96.5 0.0015 5E-08 51.6 3.3 25 153-177 45-69 (267)
195 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.6E-08 48.6 3.5 25 154-178 4-28 (204)
196 1g6h_A High-affinity branched- 96.5 0.0014 4.8E-08 51.4 3.2 26 153-178 32-57 (257)
197 3umf_A Adenylate kinase; rossm 96.5 0.0019 6.5E-08 49.4 3.8 27 152-178 27-53 (217)
198 2pze_A Cystic fibrosis transme 96.5 0.0015 5E-08 50.4 3.2 26 153-178 33-58 (229)
199 2f6r_A COA synthase, bifunctio 96.5 0.0017 5.8E-08 51.6 3.6 24 152-175 73-96 (281)
200 4g1u_C Hemin import ATP-bindin 96.5 0.0014 4.9E-08 51.6 3.2 26 153-178 36-61 (266)
201 1vht_A Dephospho-COA kinase; s 96.5 0.0018 6.2E-08 49.1 3.6 23 154-176 4-26 (218)
202 4b4t_I 26S protease regulatory 96.5 0.0024 8.2E-08 53.7 4.6 45 134-178 183-240 (437)
203 1sgw_A Putative ABC transporte 96.5 0.0011 3.8E-08 50.6 2.4 26 153-178 34-59 (214)
204 2olj_A Amino acid ABC transpor 96.5 0.0015 5.1E-08 51.5 3.2 26 153-178 49-74 (263)
205 1aky_A Adenylate kinase; ATP:A 96.5 0.002 6.7E-08 49.0 3.8 25 154-178 4-28 (220)
206 3p32_A Probable GTPase RV1496/ 96.5 0.0037 1.3E-07 51.3 5.7 37 142-178 65-103 (355)
207 1g41_A Heat shock protein HSLU 96.5 0.0024 8.4E-08 54.0 4.6 46 133-178 15-74 (444)
208 1oix_A RAS-related protein RAB 96.5 0.0019 6.5E-08 47.9 3.6 26 153-178 28-53 (191)
209 1mv5_A LMRA, multidrug resista 96.5 0.0016 5.6E-08 50.6 3.3 26 153-178 27-52 (243)
210 3dl0_A Adenylate kinase; phosp 96.5 0.0019 6.4E-08 48.9 3.6 23 156-178 2-24 (216)
211 1np6_A Molybdopterin-guanine d 96.5 0.002 6.9E-08 47.5 3.6 25 154-178 6-30 (174)
212 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0038 1.3E-07 53.7 5.7 46 133-178 31-88 (499)
213 3nwj_A ATSK2; P loop, shikimat 96.5 0.0015 5.3E-08 51.0 3.1 25 154-178 48-72 (250)
214 2ff7_A Alpha-hemolysin translo 96.5 0.0016 5.6E-08 50.7 3.2 26 153-178 34-59 (247)
215 1zak_A Adenylate kinase; ATP:A 96.5 0.002 6.8E-08 49.0 3.6 25 154-178 5-29 (222)
216 3sop_A Neuronal-specific septi 96.5 0.0019 6.6E-08 51.0 3.6 23 156-178 4-26 (270)
217 1vpl_A ABC transporter, ATP-bi 96.4 0.0017 5.8E-08 51.0 3.2 26 153-178 40-65 (256)
218 2og2_A Putative signal recogni 96.4 0.002 6.8E-08 53.1 3.6 26 153-178 156-181 (359)
219 3ake_A Cytidylate kinase; CMP 96.4 0.0021 7.3E-08 48.0 3.6 23 156-178 4-26 (208)
220 2ghi_A Transport protein; mult 96.4 0.0017 6E-08 51.0 3.2 26 153-178 45-70 (260)
221 1ypw_A Transitional endoplasmi 96.4 0.0013 4.6E-08 59.8 2.8 45 134-178 205-262 (806)
222 2ixe_A Antigen peptide transpo 96.4 0.0018 6.1E-08 51.2 3.2 26 153-178 44-69 (271)
223 2qi9_C Vitamin B12 import ATP- 96.4 0.0019 6.3E-08 50.5 3.2 26 153-178 25-50 (249)
224 4eaq_A DTMP kinase, thymidylat 96.4 0.005 1.7E-07 47.3 5.5 26 153-178 25-50 (229)
225 2eyu_A Twitching motility prot 96.4 0.0023 7.8E-08 50.3 3.6 27 152-178 23-49 (261)
226 2ihy_A ABC transporter, ATP-bi 96.4 0.0019 6.4E-08 51.4 3.2 26 153-178 46-71 (279)
227 2yz2_A Putative ABC transporte 96.4 0.0019 6.5E-08 50.9 3.2 26 153-178 32-57 (266)
228 3io5_A Recombination and repai 96.4 0.0055 1.9E-07 49.5 5.8 54 155-214 29-82 (333)
229 2qgz_A Helicase loader, putati 96.4 0.0034 1.1E-07 50.6 4.6 38 141-178 136-176 (308)
230 2nq2_C Hypothetical ABC transp 96.4 0.002 6.7E-08 50.5 3.2 26 153-178 30-55 (253)
231 1cr0_A DNA primase/helicase; R 96.4 0.006 2.1E-07 48.5 6.0 52 153-208 34-85 (296)
232 3d3q_A TRNA delta(2)-isopenten 96.4 0.0025 8.7E-08 52.0 3.8 24 155-178 8-31 (340)
233 2f9l_A RAB11B, member RAS onco 96.3 0.0024 8.3E-08 47.5 3.4 24 154-177 5-28 (199)
234 3tlx_A Adenylate kinase 2; str 96.3 0.0028 9.7E-08 49.1 3.9 27 152-178 27-53 (243)
235 3k1j_A LON protease, ATP-depen 96.3 0.0037 1.3E-07 55.0 5.1 43 134-178 42-84 (604)
236 3r20_A Cytidylate kinase; stru 96.3 0.0025 8.5E-08 49.3 3.5 25 154-178 9-33 (233)
237 2dyk_A GTP-binding protein; GT 96.3 0.0028 9.7E-08 45.0 3.6 24 155-178 2-25 (161)
238 1u94_A RECA protein, recombina 96.3 0.0047 1.6E-07 50.8 5.2 45 153-200 62-106 (356)
239 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0026 8.9E-08 48.3 3.3 26 153-178 22-47 (235)
240 1vma_A Cell division protein F 96.3 0.003 1E-07 50.9 3.8 26 153-178 103-128 (306)
241 1e4v_A Adenylate kinase; trans 96.3 0.0029 1E-07 47.8 3.6 23 156-178 2-24 (214)
242 3end_A Light-independent proto 96.3 0.0027 9.3E-08 50.8 3.6 28 151-178 38-65 (307)
243 2v9p_A Replication protein E1; 96.3 0.0026 8.8E-08 51.2 3.4 26 152-177 124-149 (305)
244 2wji_A Ferrous iron transport 96.3 0.0027 9.3E-08 45.7 3.3 23 155-177 4-26 (165)
245 3m6a_A ATP-dependent protease 96.3 0.0057 1.9E-07 53.2 5.7 45 134-178 82-132 (543)
246 3be4_A Adenylate kinase; malar 96.3 0.0031 1.1E-07 47.8 3.7 24 155-178 6-29 (217)
247 2xb4_A Adenylate kinase; ATP-b 96.2 0.0031 1.1E-07 48.2 3.6 22 156-177 2-23 (223)
248 3bh0_A DNAB-like replicative h 96.2 0.013 4.3E-07 47.3 7.3 52 153-209 67-118 (315)
249 2vp4_A Deoxynucleoside kinase; 96.2 0.0018 6.2E-08 49.7 2.1 25 153-177 19-43 (230)
250 2ce2_X GTPase HRAS; signaling 96.2 0.0031 1E-07 44.8 3.3 23 156-178 5-27 (166)
251 1p9r_A General secretion pathw 96.2 0.0056 1.9E-07 51.4 5.3 34 145-178 158-191 (418)
252 2pjz_A Hypothetical protein ST 96.2 0.0027 9.3E-08 50.0 3.2 24 154-177 30-53 (263)
253 1moz_A ARL1, ADP-ribosylation 96.2 0.0042 1.4E-07 45.2 4.0 34 143-176 6-40 (183)
254 2dr3_A UPF0273 protein PH0284; 96.2 0.0076 2.6E-07 46.1 5.6 55 153-213 22-76 (247)
255 3fvq_A Fe(3+) IONS import ATP- 96.2 0.003 1E-07 51.9 3.5 26 153-178 29-54 (359)
256 1yrb_A ATP(GTP)binding protein 96.2 0.0033 1.1E-07 48.8 3.6 26 153-178 13-38 (262)
257 2wjg_A FEOB, ferrous iron tran 96.2 0.0032 1.1E-07 46.1 3.3 24 154-177 7-30 (188)
258 2bbs_A Cystic fibrosis transme 96.2 0.003 1E-07 50.5 3.3 26 153-178 63-88 (290)
259 2j37_W Signal recognition part 96.2 0.02 7E-07 49.2 8.6 26 153-178 100-125 (504)
260 2ged_A SR-beta, signal recogni 96.1 0.0081 2.8E-07 44.1 5.4 26 153-178 47-72 (193)
261 1zj6_A ADP-ribosylation factor 96.1 0.0069 2.3E-07 44.4 4.9 34 143-177 6-39 (187)
262 4gzl_A RAS-related C3 botulinu 96.1 0.0041 1.4E-07 46.5 3.7 42 137-178 13-54 (204)
263 1ak2_A Adenylate kinase isoenz 96.1 0.0037 1.3E-07 48.0 3.6 25 154-178 16-40 (233)
264 2zej_A Dardarin, leucine-rich 96.1 0.003 1E-07 46.4 2.9 21 156-176 4-24 (184)
265 2ffh_A Protein (FFH); SRP54, s 96.1 0.013 4.5E-07 49.3 7.1 26 153-178 97-122 (425)
266 1z2a_A RAS-related protein RAB 96.1 0.0034 1.2E-07 44.8 3.1 25 154-178 5-29 (168)
267 2gno_A DNA polymerase III, gam 96.1 0.022 7.6E-07 45.7 8.2 73 137-211 1-75 (305)
268 1xp8_A RECA protein, recombina 96.1 0.007 2.4E-07 50.0 5.3 45 153-200 73-117 (366)
269 3crm_A TRNA delta(2)-isopenten 96.1 0.004 1.4E-07 50.5 3.7 24 155-178 6-29 (323)
270 3pxi_A Negative regulator of g 96.1 0.01 3.4E-07 53.6 6.8 46 133-178 491-545 (758)
271 3tui_C Methionine import ATP-b 96.1 0.0034 1.1E-07 51.8 3.3 27 152-178 52-78 (366)
272 1nlf_A Regulatory protein REPA 96.1 0.0035 1.2E-07 49.5 3.4 26 153-178 29-54 (279)
273 3sr0_A Adenylate kinase; phosp 96.1 0.004 1.4E-07 47.2 3.5 23 156-178 2-24 (206)
274 3nh6_A ATP-binding cassette SU 96.1 0.0023 7.8E-08 51.5 2.3 27 152-178 78-104 (306)
275 3t1o_A Gliding protein MGLA; G 96.1 0.0037 1.3E-07 45.9 3.3 25 154-178 14-38 (198)
276 1zu4_A FTSY; GTPase, signal re 96.1 0.0042 1.4E-07 50.3 3.8 27 152-178 103-129 (320)
277 1ltq_A Polynucleotide kinase; 96.1 0.004 1.4E-07 49.6 3.6 23 155-177 3-25 (301)
278 1j8m_F SRP54, signal recogniti 96.1 0.0085 2.9E-07 48.0 5.5 25 154-178 98-122 (297)
279 1z47_A CYSA, putative ABC-tran 96.1 0.0036 1.2E-07 51.5 3.4 26 153-178 40-65 (355)
280 3kta_A Chromosome segregation 96.1 0.0042 1.4E-07 45.6 3.4 22 155-176 27-48 (182)
281 1ls1_A Signal recognition part 96.1 0.0042 1.5E-07 49.7 3.6 26 153-178 97-122 (295)
282 3con_A GTPase NRAS; structural 96.1 0.0038 1.3E-07 45.8 3.2 24 155-178 22-45 (190)
283 1fzq_A ADP-ribosylation factor 96.0 0.0064 2.2E-07 44.5 4.4 26 152-177 14-39 (181)
284 1u8z_A RAS-related protein RAL 96.0 0.0041 1.4E-07 44.3 3.2 24 155-178 5-28 (168)
285 1q3t_A Cytidylate kinase; nucl 96.0 0.0047 1.6E-07 47.5 3.7 25 153-177 15-39 (236)
286 2yyz_A Sugar ABC transporter, 96.0 0.0039 1.3E-07 51.3 3.4 26 153-178 28-53 (359)
287 1a7j_A Phosphoribulokinase; tr 96.0 0.002 6.7E-08 51.5 1.5 26 153-178 4-29 (290)
288 2ocp_A DGK, deoxyguanosine kin 96.0 0.0056 1.9E-07 47.2 4.0 25 154-178 2-26 (241)
289 2it1_A 362AA long hypothetical 96.0 0.004 1.4E-07 51.3 3.3 26 153-178 28-53 (362)
290 3exa_A TRNA delta(2)-isopenten 96.0 0.0049 1.7E-07 49.7 3.7 25 154-178 3-27 (322)
291 1nij_A Hypothetical protein YJ 96.0 0.0033 1.1E-07 50.8 2.8 25 153-177 3-27 (318)
292 1g29_1 MALK, maltose transport 96.0 0.0041 1.4E-07 51.4 3.4 26 153-178 28-53 (372)
293 1svm_A Large T antigen; AAA+ f 96.0 0.0044 1.5E-07 51.4 3.5 27 152-178 167-193 (377)
294 3rlf_A Maltose/maltodextrin im 96.0 0.0042 1.4E-07 51.5 3.3 26 153-178 28-53 (381)
295 2nzj_A GTP-binding protein REM 96.0 0.0037 1.3E-07 45.0 2.7 25 154-178 4-28 (175)
296 1c1y_A RAS-related protein RAP 96.0 0.0048 1.6E-07 44.0 3.3 23 156-178 5-27 (167)
297 1v43_A Sugar-binding transport 96.0 0.0043 1.5E-07 51.3 3.3 26 153-178 36-61 (372)
298 2gj8_A MNME, tRNA modification 95.9 0.0046 1.6E-07 45.0 3.1 24 155-178 5-28 (172)
299 3jvv_A Twitching mobility prot 95.9 0.0071 2.4E-07 49.7 4.5 28 151-178 120-147 (356)
300 1z08_A RAS-related protein RAB 95.9 0.0047 1.6E-07 44.2 3.1 25 154-178 6-30 (170)
301 1cp2_A CP2, nitrogenase iron p 95.9 0.0049 1.7E-07 48.2 3.4 24 155-178 2-25 (269)
302 1ek0_A Protein (GTP-binding pr 95.9 0.0048 1.6E-07 44.0 3.2 23 156-178 5-27 (170)
303 1lw7_A Transcriptional regulat 95.9 0.0046 1.6E-07 50.9 3.4 25 154-178 170-194 (365)
304 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0049 1.7E-07 45.1 3.3 25 154-178 7-31 (184)
305 3a8t_A Adenylate isopentenyltr 95.9 0.0049 1.7E-07 50.2 3.5 26 153-178 39-64 (339)
306 2obl_A ESCN; ATPase, hydrolase 95.9 0.0051 1.7E-07 50.4 3.6 34 145-178 61-95 (347)
307 1z0j_A RAB-22, RAS-related pro 95.9 0.0049 1.7E-07 44.1 3.1 24 155-178 7-30 (170)
308 1r8s_A ADP-ribosylation factor 95.9 0.0054 1.8E-07 43.7 3.4 23 156-178 2-24 (164)
309 2fn4_A P23, RAS-related protei 95.9 0.0051 1.8E-07 44.4 3.2 26 153-178 8-33 (181)
310 2erx_A GTP-binding protein DI- 95.9 0.0048 1.6E-07 44.1 3.0 24 155-178 4-27 (172)
311 2qnr_A Septin-2, protein NEDD5 95.9 0.0042 1.4E-07 49.8 2.9 24 153-177 18-41 (301)
312 1ky3_A GTP-binding protein YPT 95.9 0.0051 1.7E-07 44.5 3.1 26 153-178 7-32 (182)
313 1kao_A RAP2A; GTP-binding prot 95.9 0.0054 1.8E-07 43.6 3.2 24 155-178 4-27 (167)
314 1tq4_A IIGP1, interferon-induc 95.9 0.0076 2.6E-07 50.5 4.6 26 152-177 67-92 (413)
315 3d31_A Sulfate/molybdate ABC t 95.9 0.0036 1.2E-07 51.3 2.5 26 153-178 25-50 (348)
316 1f6b_A SAR1; gtpases, N-termin 95.9 0.0088 3E-07 44.5 4.5 25 152-176 23-47 (198)
317 4edh_A DTMP kinase, thymidylat 95.9 0.018 6E-07 43.8 6.2 33 154-188 6-38 (213)
318 3lv8_A DTMP kinase, thymidylat 95.9 0.015 5E-07 45.0 5.8 52 154-207 27-78 (236)
319 1svi_A GTP-binding protein YSX 95.8 0.0058 2E-07 44.9 3.4 26 152-177 21-46 (195)
320 3q72_A GTP-binding protein RAD 95.8 0.0053 1.8E-07 43.8 3.0 21 156-176 4-24 (166)
321 1g16_A RAS-related protein SEC 95.8 0.0057 1.9E-07 43.7 3.2 24 155-178 4-27 (170)
322 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0065 2.2E-07 49.2 3.8 24 154-177 123-146 (331)
323 3foz_A TRNA delta(2)-isopenten 95.8 0.0064 2.2E-07 49.0 3.7 26 153-178 9-34 (316)
324 2lkc_A Translation initiation 95.8 0.0065 2.2E-07 43.9 3.6 27 152-178 6-32 (178)
325 2afh_E Nitrogenase iron protei 95.8 0.0062 2.1E-07 48.2 3.6 25 154-178 2-26 (289)
326 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.0056 1.9E-07 44.2 3.1 25 154-178 7-31 (177)
327 3cf2_A TER ATPase, transitiona 95.8 0.0047 1.6E-07 56.0 3.2 44 135-178 206-262 (806)
328 1oxx_K GLCV, glucose, ABC tran 95.8 0.0032 1.1E-07 51.7 2.0 26 153-178 30-55 (353)
329 1nrj_B SR-beta, signal recogni 95.8 0.007 2.4E-07 45.5 3.8 27 152-178 10-36 (218)
330 3zvl_A Bifunctional polynucleo 95.8 0.0054 1.9E-07 51.5 3.4 27 152-178 256-282 (416)
331 3ihw_A Centg3; RAS, centaurin, 95.8 0.0057 1.9E-07 45.0 3.1 25 153-177 19-43 (184)
332 2hxs_A RAB-26, RAS-related pro 95.8 0.0066 2.2E-07 43.8 3.4 25 154-178 6-30 (178)
333 3gd7_A Fusion complex of cysti 95.8 0.0058 2E-07 50.8 3.5 26 152-177 45-70 (390)
334 1m2o_B GTP-binding protein SAR 95.8 0.0061 2.1E-07 45.0 3.3 25 153-177 22-46 (190)
335 1z0f_A RAB14, member RAS oncog 95.8 0.006 2.1E-07 44.0 3.2 26 153-178 14-39 (179)
336 1r2q_A RAS-related protein RAB 95.8 0.0063 2.2E-07 43.4 3.3 24 155-178 7-30 (170)
337 2bme_A RAB4A, RAS-related prot 95.8 0.0062 2.1E-07 44.4 3.3 25 154-178 10-34 (186)
338 3q85_A GTP-binding protein REM 95.8 0.0067 2.3E-07 43.4 3.4 22 155-176 3-24 (169)
339 3pqc_A Probable GTP-binding pr 95.8 0.0069 2.4E-07 44.4 3.5 26 153-178 22-47 (195)
340 2b6h_A ADP-ribosylation factor 95.8 0.0067 2.3E-07 44.9 3.4 28 149-176 24-51 (192)
341 3kkq_A RAS-related protein M-R 95.8 0.0061 2.1E-07 44.3 3.2 26 153-178 17-42 (183)
342 1tue_A Replication protein E1; 95.8 0.0096 3.3E-07 45.1 4.2 37 142-178 45-82 (212)
343 4dsu_A GTPase KRAS, isoform 2B 95.8 0.0061 2.1E-07 44.4 3.1 24 155-178 5-28 (189)
344 1upt_A ARL1, ADP-ribosylation 95.8 0.0063 2.1E-07 43.6 3.2 25 154-178 7-31 (171)
345 3c5c_A RAS-like protein 12; GD 95.7 0.0061 2.1E-07 44.8 3.1 26 153-178 20-45 (187)
346 4tmk_A Protein (thymidylate ki 95.7 0.019 6.6E-07 43.6 6.0 52 155-208 4-55 (213)
347 2ewv_A Twitching motility prot 95.7 0.0068 2.3E-07 50.1 3.7 27 152-178 134-160 (372)
348 2cxx_A Probable GTP-binding pr 95.7 0.0055 1.9E-07 44.8 2.8 23 156-178 3-25 (190)
349 1pui_A ENGB, probable GTP-bind 95.7 0.0035 1.2E-07 46.9 1.7 25 152-176 24-48 (210)
350 2y8e_A RAB-protein 6, GH09086P 95.7 0.0069 2.4E-07 43.6 3.3 24 155-178 15-38 (179)
351 3llu_A RAS-related GTP-binding 95.7 0.0059 2E-07 45.3 2.9 25 153-177 19-43 (196)
352 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0067 2.3E-07 44.1 3.2 24 155-178 6-29 (186)
353 2gza_A Type IV secretion syste 95.7 0.0055 1.9E-07 50.4 2.9 26 153-178 174-199 (361)
354 2a9k_A RAS-related protein RAL 95.7 0.0068 2.3E-07 44.0 3.2 25 154-178 18-42 (187)
355 3f9v_A Minichromosome maintena 95.7 0.0042 1.4E-07 54.6 2.3 46 133-178 295-351 (595)
356 1r6b_X CLPA protein; AAA+, N-t 95.7 0.017 5.7E-07 52.2 6.2 46 133-178 458-512 (758)
357 2oil_A CATX-8, RAS-related pro 95.7 0.0068 2.3E-07 44.6 3.1 26 153-178 24-49 (193)
358 3t5g_A GTP-binding protein RHE 95.7 0.0073 2.5E-07 43.8 3.3 25 154-178 6-30 (181)
359 3bwd_D RAC-like GTP-binding pr 95.7 0.007 2.4E-07 43.9 3.2 25 154-178 8-32 (182)
360 2qm8_A GTPase/ATPase; G protei 95.7 0.0088 3E-07 48.8 4.0 26 152-177 53-78 (337)
361 3dz8_A RAS-related protein RAB 95.7 0.0078 2.7E-07 44.3 3.4 26 153-178 22-47 (191)
362 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.0061 2.1E-07 51.9 3.2 26 153-178 137-162 (460)
363 3upu_A ATP-dependent DNA helic 95.7 0.018 6.1E-07 48.8 6.1 40 138-178 30-69 (459)
364 2bov_A RAla, RAS-related prote 95.7 0.007 2.4E-07 44.9 3.2 26 153-178 13-38 (206)
365 2www_A Methylmalonic aciduria 95.6 0.0083 2.8E-07 49.1 3.8 25 153-177 73-97 (349)
366 3bc1_A RAS-related protein RAB 95.6 0.0075 2.6E-07 44.1 3.3 25 154-178 11-35 (195)
367 2iwr_A Centaurin gamma 1; ANK 95.6 0.0054 1.9E-07 44.4 2.4 24 155-178 8-31 (178)
368 2efe_B Small GTP-binding prote 95.6 0.0072 2.5E-07 43.8 3.1 25 154-178 12-36 (181)
369 2fg5_A RAB-22B, RAS-related pr 95.6 0.0075 2.6E-07 44.4 3.2 25 154-178 23-47 (192)
370 1vg8_A RAS-related protein RAB 95.6 0.0073 2.5E-07 44.9 3.1 26 153-178 7-32 (207)
371 3tw8_B RAS-related protein RAB 95.6 0.0068 2.3E-07 43.8 2.9 26 153-178 8-33 (181)
372 2atv_A RERG, RAS-like estrogen 95.6 0.0074 2.5E-07 44.6 3.1 27 152-178 26-52 (196)
373 1ksh_A ARF-like protein 2; sma 95.6 0.0072 2.5E-07 44.1 3.0 27 152-178 16-42 (186)
374 2g6b_A RAS-related protein RAB 95.6 0.0078 2.7E-07 43.5 3.2 25 154-178 10-34 (180)
375 3eph_A TRNA isopentenyltransfe 95.6 0.0089 3E-07 49.9 3.8 24 155-178 3-26 (409)
376 1gwn_A RHO-related GTP-binding 95.6 0.008 2.7E-07 45.1 3.3 26 153-178 27-52 (205)
377 3cbq_A GTP-binding protein REM 95.6 0.0058 2E-07 45.4 2.4 23 153-175 22-44 (195)
378 1qvr_A CLPB protein; coiled co 95.6 0.009 3.1E-07 54.7 4.1 45 134-178 559-612 (854)
379 2v3c_C SRP54, signal recogniti 95.6 0.0048 1.6E-07 52.1 2.2 25 154-178 99-123 (432)
380 3clv_A RAB5 protein, putative; 95.6 0.0078 2.7E-07 44.2 3.1 25 154-178 7-31 (208)
381 3oes_A GTPase rhebl1; small GT 95.6 0.0086 3E-07 44.5 3.4 26 153-178 23-48 (201)
382 3k53_A Ferrous iron transport 95.6 0.0095 3.3E-07 46.8 3.8 25 154-178 3-27 (271)
383 2fh5_B SR-beta, signal recogni 95.5 0.008 2.7E-07 45.0 3.2 26 153-178 6-31 (214)
384 3tkl_A RAS-related protein RAB 95.5 0.0083 2.8E-07 44.1 3.2 25 154-178 16-40 (196)
385 2h92_A Cytidylate kinase; ross 95.5 0.0082 2.8E-07 45.3 3.2 23 155-177 4-26 (219)
386 1zd9_A ADP-ribosylation factor 95.5 0.0085 2.9E-07 44.0 3.2 25 154-178 22-46 (188)
387 2gf0_A GTP-binding protein DI- 95.5 0.0091 3.1E-07 44.0 3.3 26 153-178 7-32 (199)
388 2ew1_A RAS-related protein RAB 95.5 0.0092 3.1E-07 44.6 3.4 26 153-178 25-50 (201)
389 1ega_A Protein (GTP-binding pr 95.5 0.0088 3E-07 47.9 3.4 25 154-178 8-32 (301)
390 3ice_A Transcription terminati 95.5 0.02 6.8E-07 47.6 5.5 54 143-197 162-216 (422)
391 3reg_A RHO-like small GTPase; 95.5 0.0087 3E-07 44.1 3.2 26 153-178 22-47 (194)
392 2cjw_A GTP-binding protein GEM 95.5 0.0091 3.1E-07 44.2 3.3 23 154-176 6-28 (192)
393 2p67_A LAO/AO transport system 95.5 0.0095 3.3E-07 48.6 3.6 26 152-177 54-79 (341)
394 2gf9_A RAS-related protein RAB 95.5 0.009 3.1E-07 43.8 3.2 26 153-178 21-46 (189)
395 3cr8_A Sulfate adenylyltranfer 95.5 0.015 5.1E-07 50.6 5.0 26 153-178 368-393 (552)
396 2dpy_A FLII, flagellum-specifi 95.5 0.0093 3.2E-07 50.4 3.6 27 152-178 155-181 (438)
397 1zbd_A Rabphilin-3A; G protein 95.5 0.0081 2.8E-07 44.6 2.9 25 154-178 8-32 (203)
398 1g8f_A Sulfate adenylyltransfe 95.5 0.017 5.8E-07 49.7 5.2 44 135-178 374-419 (511)
399 2a5j_A RAS-related protein RAB 95.5 0.009 3.1E-07 43.9 3.1 25 154-178 21-45 (191)
400 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0085 2.9E-07 52.0 3.3 26 153-178 311-336 (538)
401 2qag_B Septin-6, protein NEDD5 95.4 0.0067 2.3E-07 51.0 2.6 22 156-177 44-65 (427)
402 1x3s_A RAS-related protein RAB 95.4 0.0096 3.3E-07 43.6 3.2 25 154-178 15-39 (195)
403 1z06_A RAS-related protein RAB 95.4 0.0096 3.3E-07 43.7 3.1 26 153-178 19-44 (189)
404 1p5z_B DCK, deoxycytidine kina 95.4 0.0057 1.9E-07 47.8 2.0 27 152-178 22-48 (263)
405 3lxx_A GTPase IMAP family memb 95.4 0.0084 2.9E-07 46.0 2.9 27 152-178 27-53 (239)
406 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.0062 2.1E-07 49.5 2.3 25 154-178 171-195 (330)
407 2bcg_Y Protein YP2, GTP-bindin 95.4 0.0099 3.4E-07 44.2 3.2 25 154-178 8-32 (206)
408 2p5s_A RAS and EF-hand domain 95.4 0.0094 3.2E-07 44.2 3.1 27 152-178 26-52 (199)
409 2o52_A RAS-related protein RAB 95.4 0.0089 3E-07 44.4 3.0 26 153-178 24-49 (200)
410 2q3h_A RAS homolog gene family 95.4 0.0086 2.9E-07 44.3 2.9 25 153-177 19-43 (201)
411 3hdt_A Putative kinase; struct 95.4 0.017 5.7E-07 44.3 4.5 26 153-178 13-38 (223)
412 2ck3_D ATP synthase subunit be 95.4 0.041 1.4E-06 46.8 7.2 64 144-209 142-207 (482)
413 2atx_A Small GTP binding prote 95.4 0.01 3.6E-07 43.6 3.2 25 154-178 18-42 (194)
414 2fv8_A H6, RHO-related GTP-bin 95.4 0.01 3.5E-07 44.3 3.2 25 154-178 25-49 (207)
415 2yv5_A YJEQ protein; hydrolase 95.4 0.01 3.5E-07 47.6 3.3 33 142-178 156-188 (302)
416 1yqt_A RNAse L inhibitor; ATP- 95.3 0.0095 3.2E-07 51.7 3.3 26 153-178 46-71 (538)
417 3gmt_A Adenylate kinase; ssgci 95.3 0.011 3.7E-07 45.6 3.3 25 154-178 8-32 (230)
418 2h17_A ADP-ribosylation factor 95.3 0.0094 3.2E-07 43.4 2.9 24 154-177 21-44 (181)
419 2j1l_A RHO-related GTP-binding 95.3 0.0095 3.3E-07 44.8 2.9 25 153-177 33-57 (214)
420 3ozx_A RNAse L inhibitor; ATP 95.3 0.0084 2.9E-07 52.0 2.8 25 154-178 294-318 (538)
421 3euj_A Chromosome partition pr 95.3 0.01 3.6E-07 50.7 3.3 24 155-178 30-53 (483)
422 2hup_A RAS-related protein RAB 95.3 0.011 3.9E-07 43.9 3.2 26 153-178 28-53 (201)
423 2j0v_A RAC-like GTP-binding pr 95.3 0.012 3.9E-07 44.1 3.3 25 154-178 9-33 (212)
424 2gco_A H9, RHO-related GTP-bin 95.3 0.012 4E-07 43.8 3.3 25 154-178 25-49 (201)
425 2rcn_A Probable GTPase ENGC; Y 95.3 0.011 3.8E-07 48.6 3.3 24 155-178 216-239 (358)
426 2qu8_A Putative nucleolar GTP- 95.3 0.012 4.2E-07 44.7 3.4 26 153-178 28-53 (228)
427 3ozx_A RNAse L inhibitor; ATP 95.3 0.011 3.6E-07 51.4 3.3 26 153-178 24-49 (538)
428 1fx0_B ATP synthase beta chain 95.3 0.046 1.6E-06 46.7 7.1 63 145-209 155-219 (498)
429 3cph_A RAS-related protein SEC 95.3 0.011 3.9E-07 44.0 3.1 26 153-178 19-44 (213)
430 1f2t_A RAD50 ABC-ATPase; DNA d 95.2 0.014 4.9E-07 41.6 3.5 23 154-176 23-45 (149)
431 3bk7_A ABC transporter ATP-bin 95.2 0.011 3.7E-07 52.1 3.3 26 153-178 381-406 (607)
432 1ypw_A Transitional endoplasmi 95.2 0.0077 2.6E-07 54.8 2.5 46 133-178 477-535 (806)
433 4hlc_A DTMP kinase, thymidylat 95.2 0.04 1.4E-06 41.5 6.1 31 155-188 3-33 (205)
434 4bas_A ADP-ribosylation factor 95.2 0.014 4.8E-07 42.9 3.5 26 153-178 16-41 (199)
435 4dzz_A Plasmid partitioning pr 95.2 0.011 3.9E-07 43.9 2.9 24 155-178 2-26 (206)
436 3q3j_B RHO-related GTP-binding 95.1 0.013 4.4E-07 44.2 3.2 25 154-178 27-51 (214)
437 3j16_B RLI1P; ribosome recycli 95.1 0.012 4E-07 51.9 3.3 24 155-178 379-402 (608)
438 3j16_B RLI1P; ribosome recycli 95.1 0.012 4.2E-07 51.8 3.3 26 153-178 102-127 (608)
439 2orw_A Thymidine kinase; TMTK, 95.1 0.017 5.9E-07 42.7 3.7 23 155-177 4-26 (184)
440 3th5_A RAS-related C3 botulinu 94.1 0.0037 1.3E-07 46.6 0.0 33 145-177 21-53 (204)
441 2qag_C Septin-7; cell cycle, c 95.1 0.0097 3.3E-07 50.0 2.5 22 157-178 34-55 (418)
442 2h57_A ADP-ribosylation factor 95.1 0.0086 2.9E-07 44.0 2.0 25 154-178 21-45 (190)
443 2fu5_C RAS-related protein RAB 95.1 0.007 2.4E-07 44.0 1.5 24 154-177 8-31 (183)
444 3fdi_A Uncharacterized protein 95.1 0.018 6E-07 43.3 3.7 24 155-178 7-30 (201)
445 2il1_A RAB12; G-protein, GDP, 95.1 0.013 4.5E-07 43.2 3.0 25 154-178 26-50 (192)
446 3v9p_A DTMP kinase, thymidylat 95.1 0.018 6E-07 44.3 3.7 25 154-178 25-49 (227)
447 1u0l_A Probable GTPase ENGC; p 95.1 0.013 4.6E-07 46.8 3.2 34 142-178 160-193 (301)
448 2g3y_A GTP-binding protein GEM 95.0 0.014 4.8E-07 44.2 3.1 24 153-176 36-59 (211)
449 3io3_A DEHA2D07832P; chaperone 95.0 0.036 1.2E-06 45.3 5.7 28 151-178 15-42 (348)
450 1mky_A Probable GTP-binding pr 95.0 0.031 1.1E-06 47.1 5.5 43 136-178 151-204 (439)
451 2xtp_A GTPase IMAP family memb 95.0 0.018 6.1E-07 44.7 3.7 26 153-178 21-46 (260)
452 3iev_A GTP-binding protein ERA 95.0 0.015 5.3E-07 46.6 3.4 26 153-178 9-34 (308)
453 2f7s_A C25KG, RAS-related prot 95.0 0.013 4.3E-07 44.0 2.7 26 153-178 24-49 (217)
454 2qmh_A HPR kinase/phosphorylas 94.9 0.015 5.1E-07 43.8 2.9 26 153-178 33-58 (205)
455 3def_A T7I23.11 protein; chlor 94.9 0.034 1.2E-06 43.3 5.2 26 153-178 35-60 (262)
456 3tmk_A Thymidylate kinase; pho 94.9 0.059 2E-06 41.0 6.3 25 154-178 5-29 (216)
457 3iby_A Ferrous iron transport 94.9 0.017 5.9E-07 45.1 3.4 24 155-178 2-25 (256)
458 3bk7_A ABC transporter ATP-bin 94.9 0.014 4.8E-07 51.4 3.2 26 153-178 116-141 (607)
459 2r8r_A Sensor protein; KDPD, P 94.9 0.019 6.6E-07 44.0 3.5 23 156-178 8-30 (228)
460 3ch4_B Pmkase, phosphomevalona 94.9 0.022 7.4E-07 42.9 3.7 27 152-178 9-35 (202)
461 2axn_A 6-phosphofructo-2-kinas 94.9 0.02 7E-07 49.4 4.1 27 152-178 33-59 (520)
462 3b60_A Lipid A export ATP-bind 94.9 0.015 5.1E-07 50.9 3.3 27 152-178 367-393 (582)
463 3ld9_A DTMP kinase, thymidylat 94.9 0.021 7.3E-07 43.7 3.8 27 152-178 19-45 (223)
464 1wf3_A GTP-binding protein; GT 94.9 0.017 5.8E-07 46.3 3.4 25 154-178 7-31 (301)
465 3iqw_A Tail-anchored protein t 94.9 0.053 1.8E-06 44.1 6.3 47 151-200 13-59 (334)
466 1t9h_A YLOQ, probable GTPase E 94.9 0.0071 2.4E-07 48.7 1.1 24 154-177 173-196 (307)
467 2x77_A ADP-ribosylation factor 94.9 0.022 7.6E-07 41.6 3.7 25 152-176 20-44 (189)
468 4dkx_A RAS-related protein RAB 94.8 0.018 6E-07 43.8 3.2 22 156-177 15-36 (216)
469 3b5x_A Lipid A export ATP-bind 94.8 0.015 5.1E-07 50.9 3.1 26 153-178 368-393 (582)
470 1bif_A 6-phosphofructo-2-kinas 94.8 0.019 6.4E-07 48.9 3.6 27 152-178 37-63 (469)
471 4dhe_A Probable GTP-binding pr 94.8 0.0094 3.2E-07 44.9 1.5 26 153-178 28-53 (223)
472 3cpj_B GTP-binding protein YPT 94.8 0.018 6.1E-07 43.5 3.1 25 154-178 13-37 (223)
473 3kjh_A CO dehydrogenase/acetyl 94.8 0.013 4.5E-07 44.9 2.3 23 156-178 2-24 (254)
474 4a1f_A DNAB helicase, replicat 94.7 0.059 2E-06 43.9 6.2 52 153-209 45-96 (338)
475 3cwq_A Para family chromosome 94.7 0.019 6.6E-07 43.2 3.1 24 155-178 1-25 (209)
476 1a5t_A Delta prime, HOLB; zinc 94.7 0.04 1.4E-06 44.6 5.2 41 138-178 7-48 (334)
477 2qtf_A Protein HFLX, GTP-bindi 94.7 0.018 6E-07 47.5 3.1 26 153-178 178-203 (364)
478 3b1v_A Ferrous iron uptake tra 94.7 0.02 6.9E-07 45.1 3.3 24 154-177 3-26 (272)
479 3lxw_A GTPase IMAP family memb 94.7 0.018 6.2E-07 44.6 2.9 26 153-178 20-45 (247)
480 1h65_A Chloroplast outer envel 94.6 0.043 1.5E-06 42.9 5.1 26 153-178 38-63 (270)
481 2oap_1 GSPE-2, type II secreti 94.6 0.016 5.5E-07 49.9 2.7 25 154-178 260-284 (511)
482 1ni3_A YCHF GTPase, YCHF GTP-b 94.6 0.024 8E-07 47.2 3.6 25 153-177 19-43 (392)
483 2aka_B Dynamin-1; fusion prote 94.6 0.041 1.4E-06 43.4 4.9 26 153-178 25-50 (299)
484 3t5d_A Septin-7; GTP-binding p 94.6 0.017 5.6E-07 45.5 2.5 23 155-177 9-31 (274)
485 1tf7_A KAIC; homohexamer, hexa 94.6 0.02 6.8E-07 49.5 3.2 20 155-174 40-59 (525)
486 3fkq_A NTRC-like two-domain pr 94.6 0.025 8.5E-07 46.6 3.6 27 152-178 141-168 (373)
487 1u0j_A DNA replication protein 94.5 0.052 1.8E-06 42.7 5.2 36 142-177 90-127 (267)
488 2qag_A Septin-2, protein NEDD5 94.5 0.014 4.8E-07 48.0 2.1 23 155-177 38-60 (361)
489 1m8p_A Sulfate adenylyltransfe 94.5 0.044 1.5E-06 47.9 5.2 27 152-178 394-420 (573)
490 2gks_A Bifunctional SAT/APS ki 94.5 0.061 2.1E-06 46.7 6.0 43 136-178 352-396 (546)
491 2yc2_C IFT27, small RAB-relate 94.4 0.0086 3E-07 44.4 0.5 24 154-177 20-43 (208)
492 3gj0_A GTP-binding nuclear pro 94.4 0.018 6.3E-07 43.3 2.4 24 154-177 15-39 (221)
493 2o5v_A DNA replication and rep 94.4 0.03 1E-06 46.1 3.7 23 154-176 26-48 (359)
494 3a1s_A Iron(II) transport prot 94.4 0.026 9E-07 44.0 3.3 25 154-178 5-29 (258)
495 2yl4_A ATP-binding cassette SU 94.3 0.015 5.1E-07 51.1 1.9 27 152-178 368-394 (595)
496 2dby_A GTP-binding protein; GD 94.3 0.026 8.8E-07 46.6 3.2 23 156-178 3-25 (368)
497 1x6v_B Bifunctional 3'-phospho 94.3 0.029 1E-06 49.4 3.8 26 153-178 51-76 (630)
498 2e87_A Hypothetical protein PH 94.3 0.028 9.6E-07 46.0 3.3 26 153-178 166-191 (357)
499 3qks_A DNA double-strand break 94.3 0.033 1.1E-06 41.8 3.5 23 154-176 23-45 (203)
500 2oze_A ORF delta'; para, walke 94.3 0.023 7.8E-07 45.0 2.8 26 153-178 33-61 (298)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.71 E-value=1.9e-17 Score=144.76 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=72.0
Q ss_pred CCccccHHHHHHHHHHhccC---CceEEEEEeCCCCcHHHHHHHHHH--hcccCCCCCcEEEEEEeCCcc--CHHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVMED---TIGIVGLYGMGGVGKTTLLTQINN--KFLVSPNHFDFVIWVVVSKDL--QLEKIQEC 205 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~---~~~vi~I~G~gGvGKTtLa~~v~~--~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~ 205 (216)
+..|||+.++++|.++|... +.++|+|+||||+||||||+.+|+ +. .++.+|+.++||+|++.+ ++..+++.
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 33369999999999999754 689999999999999999999998 55 678999999999999986 89999999
Q ss_pred HHHHcCCC
Q 041535 206 VAKKIGLF 213 (216)
Q Consensus 206 i~~~l~~~ 213 (216)
|+.+++.+
T Consensus 207 il~~l~~~ 214 (549)
T 2a5y_B 207 ILLMLKSE 214 (549)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcC
Confidence 99999865
No 2
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.51 E-value=8.1e-14 Score=97.00 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=59.0
Q ss_pred ccchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 041535 2 LQSLLHICYLQDNLKDLRRESQKLIEERNDVRIRVIIAEQQQ-MKRLERVQGWFSRVQDVLYEVDRLTLESNREDVK 77 (216)
Q Consensus 2 ~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~i~~~~~~ae~~~-~~~~~~~~~Wl~~lr~~~~d~ed~ld~~~~~~~~ 77 (216)
.+|+.++.+++++++.|+++|++|+++|.+ ++.+. ...++.++.|+.++|+++||+||+||+|.++...
T Consensus 15 ~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 15 TEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468889999999999999999999999875 65542 2247899999999999999999999999988753
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.47 E-value=2.9e-14 Score=130.34 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=68.5
Q ss_pred CccccHHHHHHHHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcE-EEEEEeCCccCHHHHHHHHHHHc
Q 041535 134 SVVGLQSTFERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDF-VIWVVVSKDLQLEKIQECVAKKI 210 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l 210 (216)
..+||+.++++|.++|.. +..++|+|+||||+||||||+.+|++. .+..+|+. ++|+++++.++...++..|+..+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 349999999999999986 568999999999999999999999987 67889997 99999999999999988887754
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.27 E-value=5.2e-12 Score=111.06 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=59.6
Q ss_pred CCCccccHHHHHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhcccC-CCCC-cEEEEEEeCCccCHHHHHHHH
Q 041535 132 PTSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVS-PNHF-DFVIWVVVSKDLQLEKIQECV 206 (216)
Q Consensus 132 ~~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v-~~~F-~~~~wv~vs~~~~~~~i~~~i 206 (216)
.+.+|||+.+.++|.++|.. ++.++|+|+||||+||||||..+|++. .+ ..+| +.++|+++++. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 35689999999999999974 578999999999999999999999876 54 6789 58999999876 333444433
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.26 E-value=6.1e-12 Score=118.55 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=64.9
Q ss_pred CCCccccHHHHHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC-cEEEEEEeCCccC--HHHHHHHH
Q 041535 132 PTSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF-DFVIWVVVSKDLQ--LEKIQECV 206 (216)
Q Consensus 132 ~~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F-~~~~wv~vs~~~~--~~~i~~~i 206 (216)
.+.++||+.++++|.++|.. +..++|+|+||||+||||||+.+|++...+..+| +.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 35589999999999999963 5789999999999999999999999851224555 5788999999543 44557777
Q ss_pred HHHcCCC
Q 041535 207 AKKIGLF 213 (216)
Q Consensus 207 ~~~l~~~ 213 (216)
+..++..
T Consensus 203 ~~~l~~~ 209 (1249)
T 3sfz_A 203 CMRLDQE 209 (1249)
T ss_dssp HHHHTTT
T ss_pred HHHhhhh
Confidence 7777653
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.73 E-value=1.4e-08 Score=84.92 Aligned_cols=80 Identities=15% Similarity=0.045 Sum_probs=62.0
Q ss_pred CCccccHHHHHHHHHHh-c----c--CCceEEEE--EeCCCCcHHHHHHHHHHhcccCC---CCCc-EEEEEEeCCccCH
Q 041535 133 TSVVGLQSTFERVWSCV-M----E--DTIGIVGL--YGMGGVGKTTLLTQINNKFLVSP---NHFD-FVIWVVVSKDLQL 199 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~v~---~~F~-~~~wv~vs~~~~~ 199 (216)
+.++||+.+.+.+.++| . + .....+.| +|++|+|||||++.+++.. ... ..|+ ..+|+.+....+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 56899999999999988 3 2 24455666 9999999999999999876 211 1233 3678887778899
Q ss_pred HHHHHHHHHHcCCC
Q 041535 200 EKIQECVAKKIGLF 213 (216)
Q Consensus 200 ~~i~~~i~~~l~~~ 213 (216)
..++..++.+++.+
T Consensus 101 ~~~~~~l~~~l~~~ 114 (412)
T 1w5s_A 101 YTILSLIVRQTGYP 114 (412)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998764
No 7
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.60 E-value=4.2e-08 Score=81.08 Aligned_cols=77 Identities=12% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCccccHHHHHHHHHHhcc----CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC---cEEEEEEeCCccCHHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF---DFVIWVVVSKDLQLEKIQEC 205 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F---~~~~wv~vs~~~~~~~i~~~ 205 (216)
+.++||+.+.+.+.+++.. .....+.|+|++|+|||||++.+++.. ...| -..+|+..+...+...++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL---HKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH---HHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH---HHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 5689999999999998873 457789999999999999999999876 2222 25678887777777777777
Q ss_pred HHHHcCC
Q 041535 206 VAKKIGL 212 (216)
Q Consensus 206 i~~~l~~ 212 (216)
++.+++.
T Consensus 97 i~~~l~~ 103 (386)
T 2qby_A 97 LLESLDV 103 (386)
T ss_dssp HTTTTSC
T ss_pred HHHHhCC
Confidence 7776654
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=4.4e-07 Score=75.15 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCccccHHHHHHHHHHhcc----CCce--EEEEEeCCCCcHHHHHHHHHHhcccCCCCC-cEEEEEEeCCccCHHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVME----DTIG--IVGLYGMGGVGKTTLLTQINNKFLVSPNHF-DFVIWVVVSKDLQLEKIQEC 205 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~----~~~~--vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F-~~~~wv~vs~~~~~~~i~~~ 205 (216)
+.++|++.+.+.+..++.. .... .+.|+|+.|+|||||++.+++.. .... -..+|+..+...+...++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5689999999999998865 3334 89999999999999999999987 3331 35678888888888999999
Q ss_pred HHHHcCCC
Q 041535 206 VAKKIGLF 213 (216)
Q Consensus 206 i~~~l~~~ 213 (216)
++..++.+
T Consensus 94 l~~~l~~~ 101 (389)
T 1fnn_A 94 IARSLNIP 101 (389)
T ss_dssp HHHHTTCC
T ss_pred HHHHhCcc
Confidence 99888753
No 9
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.55 E-value=1.4e-07 Score=76.86 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=55.2
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc------CHHHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL------QLEKIQECV 206 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~------~~~~i~~~i 206 (216)
+.++||+.+.+.|.+++..+ +++.|+|++|+|||||++.+.+.. . .+|+.+.... +...++..+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 45899999999999988764 799999999999999999999865 2 6777765543 667777777
Q ss_pred HHHcC
Q 041535 207 AKKIG 211 (216)
Q Consensus 207 ~~~l~ 211 (216)
...++
T Consensus 82 ~~~l~ 86 (350)
T 2qen_A 82 QSTIS 86 (350)
T ss_dssp HHHSC
T ss_pred HHHHH
Confidence 66553
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.50 E-value=2.7e-07 Score=76.28 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=63.4
Q ss_pred CCccccHHHHHHHHHHhcc----CCceEEEEEeCCCCcHHHHHHHHHHhcccCC----CCCcEEEEEEeCCccCHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSP----NHFDFVIWVVVSKDLQLEKIQE 204 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~ 204 (216)
+.++|++.+.+.+..++.. .....+.|+|++|+||||||+.+++.. ... +.--..+|+..+...+...++.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL-EARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH-HHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH-HHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 5689999999999998843 467789999999999999999999876 111 0013467888888888888888
Q ss_pred HHHHHcCCC
Q 041535 205 CVAKKIGLF 213 (216)
Q Consensus 205 ~i~~~l~~~ 213 (216)
.++.+++.+
T Consensus 98 ~l~~~l~~~ 106 (387)
T 2v1u_A 98 AIAEAVGVR 106 (387)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhCCC
Confidence 888888753
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.47 E-value=2e-07 Score=77.20 Aligned_cols=78 Identities=13% Similarity=0.009 Sum_probs=60.4
Q ss_pred CCccccHHHHHHHHHHhcc----CCceEEEEEeCCCCcHHHHHHHHHHhcccC---CCC--CcEEEEEEeCCcc-CHHHH
Q 041535 133 TSVVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVS---PNH--FDFVIWVVVSKDL-QLEKI 202 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v---~~~--F~~~~wv~vs~~~-~~~~i 202 (216)
..++|++.+++.+.+++.. ...+.+.|+|++|+||||||+.+++..... ... ....+|+..+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5689999999999877753 456789999999999999999999875110 011 3457888877777 88888
Q ss_pred HHHHHHHc
Q 041535 203 QECVAKKI 210 (216)
Q Consensus 203 ~~~i~~~l 210 (216)
+..++.++
T Consensus 100 ~~~l~~~l 107 (384)
T 2qby_B 100 LSSLAGKL 107 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888776
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.44 E-value=8e-07 Score=72.51 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=51.7
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCc-----cCHHHHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKD-----LQLEKIQECVA 207 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~-----~~~~~i~~~i~ 207 (216)
+.++||+.+.+.|.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+.+... .+...++..+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 458999999999999 755 699999999999999999999876 22 2578887643 35555555554
Q ss_pred HH
Q 041535 208 KK 209 (216)
Q Consensus 208 ~~ 209 (216)
..
T Consensus 83 ~~ 84 (357)
T 2fna_A 83 KE 84 (357)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.26 E-value=1.4e-06 Score=64.42 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=41.1
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++...+.+.+.+.......+-|+|++|+|||+||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999987777778899999999999999998875
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.18 E-value=4.1e-06 Score=63.41 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=49.6
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCc-EEEEEEeCCccCHHHHHH
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFD-FVIWVVVSKDLQLEKIQE 204 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~-~~~wv~vs~~~~~~~i~~ 204 (216)
..++|++..++.+.+++.......+-|+|++|+|||+||+.+++.. .. ..+. ..+.+..+...+...+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL-FG-ENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH-HG-GGGGGGEEEEETTCTTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-hc-cccccceEEeccccccChHHHHH
Confidence 3478999999999999987766669999999999999999998865 11 1121 234444455445444433
No 15
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.17 E-value=2.1e-06 Score=63.31 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=41.0
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++...+.+.+.+.......+-|+|..|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988767777899999999999999998875
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.06 E-value=8.7e-06 Score=66.07 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=57.6
Q ss_pred ccccHHHHHHHHHHhcc----CCceEEEEEeCCCCcHHHHHHHHHHhcccCCC-----CCcEEEEEEeCCccCHHHHHHH
Q 041535 135 VVGLQSTFERVWSCVME----DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPN-----HFDFVIWVVVSKDLQLEKIQEC 205 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~-----~F~~~~wv~vs~~~~~~~i~~~ 205 (216)
+.||+++.+.+...|.. +....+-|+|++|+|||++++.|.+....... .| ..+.|....-.+...++..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 68999999999887754 57788899999999999999999998721111 12 3556666666788888999
Q ss_pred HHHHcC
Q 041535 206 VAKKIG 211 (216)
Q Consensus 206 i~~~l~ 211 (216)
|++++.
T Consensus 101 I~~~L~ 106 (318)
T 3te6_A 101 IWFAIS 106 (318)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 988884
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.95 E-value=8.9e-06 Score=62.24 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=39.9
Q ss_pred CCccccHHHHHHHHHHhccCC-ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++..++.+..++.... ...+.|+|++|+||||||+.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 347999999999999987654 4588999999999999999998876
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=1.3e-05 Score=64.46 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=40.6
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++..++.+.+++..+....+-++|++|+||||+|+.+.+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3579999999999999988766569999999999999999998875
No 19
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=3.1e-05 Score=62.39 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=40.8
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++..++.+.+++..+....+-++|++|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999999987776669999999999999999999874
No 20
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.65 E-value=5.1e-05 Score=64.87 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=40.1
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|++.++..++..|......-+-++|.+|+|||+||+.+....
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999977655566799999999999999998875
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.64 E-value=5.1e-05 Score=60.19 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=38.7
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+.+.+.. ...+-+-|+|++|+|||+||+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999999999887742 345678899999999999999999876
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.64 E-value=7.1e-05 Score=57.36 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeC
Q 041535 139 QSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 194 (216)
Q Consensus 139 ~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 194 (216)
+...+.+..++.......+-|+|++|+||||||+.+.+.. . .......|+..+
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~-~--~~~~~~~~~~~~ 89 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA-N--ELERRSFYIPLG 89 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEEGG
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEHH
Confidence 4556666666655567889999999999999999998876 2 222334555543
No 23
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.58 E-value=8.2e-05 Score=53.12 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=34.5
Q ss_pred CccccHHHHHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|......++.+.+.. ....-|-|+|..|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 468888888888887743 233345699999999999999999875
No 24
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.57 E-value=9.1e-05 Score=55.65 Aligned_cols=51 Identities=29% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHHHHHhccC----CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeC
Q 041535 141 TFERVWSCVMED----TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVS 194 (216)
Q Consensus 141 ~~~~l~~~L~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 194 (216)
..+.+.+++... ....+-|+|++|+||||||+.+++.. . .....+++++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~~ 91 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEhH
Confidence 444555555433 12788899999999999999999987 2 333445666543
No 25
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=5.4e-05 Score=61.70 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+..++.......+-++|+.|+||||||+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987755558999999999999999998864
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.56 E-value=0.00013 Score=58.86 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=38.4
Q ss_pred CCccccHHHHHHHHHHhcc-----CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++..+..+..++.. .....+-|+|+.|+|||+||+.+++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999998888887752 345678899999999999999999876
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.54 E-value=0.00013 Score=58.50 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=35.5
Q ss_pred CccccHHHHHHHHHHhc---------------cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVM---------------EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~---------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..++.+.+.+. ......+-++|++|+|||+||+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 47899888888876653 2345578899999999999999887765
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.51 E-value=0.00012 Score=58.34 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=38.2
Q ss_pred CCccccHHHHHHHHHHhcc------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+.+.+.. ...+.+-|+|++|+||||||+.+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999998887732 235678899999999999999999876
No 29
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.50 E-value=8.2e-05 Score=59.65 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=40.2
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|++..++.+.+++..+....+-++|+.|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3479999999999999887766568999999999999999998874
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.50 E-value=0.00014 Score=56.80 Aligned_cols=46 Identities=24% Similarity=0.210 Sum_probs=35.7
Q ss_pred CCccccHHHHHHHHHHhc---c---------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVM---E---------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.+.+++. . ...+-+-++|++|+|||+||+.+++..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899988877766542 1 234557799999999999999999876
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.49 E-value=0.00012 Score=59.60 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=38.9
Q ss_pred CCccccHHHHHHHHHHhcc-----CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+..++.. .....+-|+|+.|+|||+||+.+.+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999998888863 355678899999999999999998875
No 32
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.00013 Score=58.70 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=37.9
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+.+.+.. ...+.+-++|+.|+|||+||+.+.+..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3578999888888877642 345678999999999999999999876
No 33
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.46 E-value=0.0001 Score=54.35 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHhcc---CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 138 LQSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 138 ~~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.....+.+.+++.+ ..-..+.|+|+.|+|||||++.+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444445544433 245789999999999999999998876
No 34
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.46 E-value=9.4e-05 Score=62.85 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=40.1
Q ss_pred CCccccHHHH---HHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTF---ERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~---~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+ ..+...+.......+-++|+.|+||||||+.+.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578998888 678888877888889999999999999999999976
No 35
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.45 E-value=0.00019 Score=54.07 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHhcc---CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 138 LQSTFERVWSCVME---DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 138 ~~~~~~~l~~~L~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+++..+.+.+.+.. ....+|+|.|..|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566777777764 356899999999999999999998754
No 36
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.00015 Score=62.63 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=39.6
Q ss_pred CCccccHHHHHHHHHHhcc-----------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-----------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|++..++.+.+++.. ...+.+-|+|++|+||||||+.+.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999865 134789999999999999999999875
No 37
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.42 E-value=0.00017 Score=59.16 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=39.5
Q ss_pred CCccccHHHHHHHHHHhccCC-ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++..++.+.+.+..+. ...+-|+|+.|+||||||+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999987654 3567899999999999999998876
No 38
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.39 E-value=0.00011 Score=60.09 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=38.2
Q ss_pred CCccccHHHHHHHHHHh-ccCCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 133 TSVVGLQSTFERVWSCV-MEDTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L-~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.+++|.+...+.+.+++ ..+....+.|+|+.|+|||||++.+...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999988 6555545999999999999999999885
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.37 E-value=0.00021 Score=58.80 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=38.4
Q ss_pred CCccccHHHHHHHHHHhc------------cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVM------------EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.|.+.+. ....+-+-|+|+.|+|||+||+.+.+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 357999999999888774 2346678899999999999999999875
No 40
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.37 E-value=0.00015 Score=66.37 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=40.4
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++.++..+++.|......-+.++|.+|+||||||+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3479999999999999987666667899999999999999998865
No 41
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.36 E-value=0.00022 Score=54.05 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=30.1
Q ss_pred HHHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 141 TFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 141 ~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.++|.+.+.. ....+|+|+|..|+|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556666553 467899999999999999999998765
No 42
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.35 E-value=0.00019 Score=64.90 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=40.3
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++..++.++..|......-+-++|.+|+|||++|+.+.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999987665667899999999999999998874
No 43
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.35 E-value=0.00022 Score=56.92 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=37.9
Q ss_pred CCccccHHHHHHHHHHhcc--------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME--------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|.+..++.+...+.. ....-+-++|.+|+|||+||+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999988877753 234567799999999999999999876
No 44
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.32 E-value=0.00028 Score=63.71 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=40.6
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|++.++..+++.|......-+-++|.+|+||||||+.+.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999987766677899999999999999998765
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.31 E-value=0.00032 Score=57.59 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=36.4
Q ss_pred CCccccHHHHHH---HHHHhccCC--ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFER---VWSCVMEDT--IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~---l~~~L~~~~--~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++. +...+.... .+.+-++|++|+|||+||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999988766 455555443 3588999999999999999999987
No 46
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=0.00025 Score=57.80 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=38.5
Q ss_pred CccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..++.|...+..+.+.-+.++|+.|+||||+|+.+.+..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 368988888888888887766558999999999999999998864
No 47
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.00024 Score=55.50 Aligned_cols=46 Identities=30% Similarity=0.247 Sum_probs=34.7
Q ss_pred CCccccHHHHHHHHHHhc---c---------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVM---E---------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++.+.+.+. . ...+-+.|+|+.|+||||||+.+.+..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 457898888777665432 1 123457899999999999999999876
No 48
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.29 E-value=0.00031 Score=57.03 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=37.2
Q ss_pred CCccccHHHHHHHHHHhcc------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|.+..++.|.+.+.- ...+-+-++|++|+|||+||+.+.+..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4578999988888876631 134678899999999999999999865
No 49
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.29 E-value=0.00034 Score=56.70 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=37.8
Q ss_pred CCccccHHHHHHHHHHhcc------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.|.+.+.- ...+-+-++|++|+|||+||+.+.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4579999999999887731 134568899999999999999999876
No 50
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.28 E-value=0.00018 Score=58.72 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=35.1
Q ss_pred CccccHHHHHHHHHHhcc-----CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..++.+-..+.. .....+.++|+.|+||||||+.+.+..
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 357887777766655542 345789999999999999999999875
No 51
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=0.00015 Score=52.71 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 52
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.23 E-value=0.00044 Score=52.63 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 139 QSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 139 ~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+...+.+...+......+|.|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555555555678999999999999999999988764
No 53
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.22 E-value=0.00021 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+...+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 35689999999999999999998754
No 54
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.21 E-value=9.8e-05 Score=52.62 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=33.0
Q ss_pred CccccHHHHHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+....++.+.+.. ....-|-|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468888888888777653 233346699999999999999998865
No 55
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.19 E-value=0.00023 Score=52.64 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 56
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.18 E-value=0.00025 Score=51.53 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997763
No 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.17 E-value=0.00031 Score=56.21 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=37.0
Q ss_pred CccccHHHHHHHHHHhccC---------CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVMED---------TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..++.+...+... ....+.++|..|+||||||+.+++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 4689888888888777542 24689999999999999999999876
No 58
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.16 E-value=0.0016 Score=49.99 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=41.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCC----CCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-.++.|+|.+|+|||||+..+.... .... .-..++|+.....++...+. .++.+++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~ 85 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLS 85 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCC
Confidence 45799999999999999999998753 1111 23578888887766665543 345555543
No 59
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.15 E-value=0.00052 Score=57.06 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=38.2
Q ss_pred CCccccHHHHHHHHHHhcc------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+.+.+.. ...+-+-|+|..|+|||+||+.+.+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999888732 234678899999999999999998875
No 60
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.14 E-value=0.00063 Score=53.31 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=33.5
Q ss_pred CccccHHHHHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+.....+.+.+.. ....-+-|+|..|+|||+||+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 468988888887766642 233456799999999999999999876
No 61
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.13 E-value=0.00024 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|+|+|+.|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 62
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.13 E-value=0.00043 Score=52.49 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=34.5
Q ss_pred ccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 135 VVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+-+.++..+.+...+......+|.|+|.+|+|||||+..+....
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455566666666655678999999999999999999987764
No 63
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.13 E-value=0.00028 Score=52.92 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998753
No 64
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.0003 Score=52.80 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|+|+.|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 65
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.12 E-value=0.0007 Score=53.28 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=33.8
Q ss_pred CccccHHHHHHHHH-------Hhc---cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWS-------CVM---EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~-------~L~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.....++++. .+. .....-+-++|+.|+|||+||+.+.+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45777666555555 332 3456788899999999999999999975
No 66
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.11 E-value=0.00061 Score=54.95 Aligned_cols=46 Identities=20% Similarity=0.097 Sum_probs=39.1
Q ss_pred CCccccHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++++|.+..+..+.+++..... .++-+.|+.|+|||++|+.+.+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4589999999999999987654 567777889999999999998875
No 67
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.10 E-value=0.00057 Score=54.16 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=34.0
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|.++.++.|.+.+.. .-.+=+.++|+.|+||||||+.+.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4578888888888765431 111229999999999999999999876
No 68
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.09 E-value=0.00053 Score=56.37 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=37.1
Q ss_pred CCccccHHHHHHHHHHhcc------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.|.+.+.. ...+-|-++|+.|+|||+||+.+.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999999998887731 123457899999999999999999976
No 69
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.09 E-value=0.00035 Score=51.22 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998865
No 70
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.09 E-value=0.00043 Score=52.02 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.8
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 151 EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 151 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.....+|.|+|+.|+|||||++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999998766
No 71
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.08 E-value=0.00031 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-..+.|+|..|+|||||++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 72
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.08 E-value=0.0025 Score=48.42 Aligned_cols=58 Identities=28% Similarity=0.395 Sum_probs=38.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCC----CCCcEEEEEEeCCccCHHHHHHHHHHHcCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSP----NHFDFVIWVVVSKDLQLEKIQECVAKKIGL 212 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 212 (216)
.-.+++|+|..|+|||||++.+.... ... ..-...+|+.-...+.... +..+++.+++
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 45799999999999999999998743 111 1234577887655544443 3344555544
No 73
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.07 E-value=0.00029 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998654
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.07 E-value=0.00036 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|+|..|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988664
No 75
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.07 E-value=0.00039 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 041535 155 GIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 76
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.06 E-value=0.00043 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998864
No 77
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.06 E-value=0.00071 Score=54.12 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=23.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|+|..|+|||||++.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999987765
No 78
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.06 E-value=0.0021 Score=52.11 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=43.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCC----CCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-.++.|+|.+|+||||||..+.... .... .-..++|++....++...+. .+++.++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~ 168 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLD 168 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCC
Confidence 45689999999999999999988764 1111 12478999999888887765 345666654
No 79
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.06 E-value=0.00026 Score=55.51 Aligned_cols=46 Identities=26% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCccccHHHHHHHHHHhcc------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+.+.+.. ...+-+-++|+.|+|||+||+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4578888777776665531 122336799999999999999999876
No 80
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.05 E-value=0.00076 Score=57.18 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=37.7
Q ss_pred CCccccHHHHHHHHHHhcc------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.|.+.+.. ...+-+-++|++|+|||+||+.+.+..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999998887631 234678899999999999999999875
No 81
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.04 E-value=0.00045 Score=50.55 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.+|+|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999997754
No 82
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.04 E-value=0.00043 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|+|+.|+|||||++.+....
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 478999999999999999997643
No 83
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.03 E-value=0.00042 Score=52.06 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998764
No 84
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.02 E-value=0.00049 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998876
No 85
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.01 E-value=0.00033 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~ 175 (216)
.-.+++|+|..|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35689999999999999999543
No 86
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.01 E-value=0.00036 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||||+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 87
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.01 E-value=0.00043 Score=51.92 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|+|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998754
No 88
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.01 E-value=0.00099 Score=54.67 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHHhc----cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 136 VGLQSTFERVWSCVM----EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 136 vG~~~~~~~l~~~L~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++.+.-.+++++.+. .+....|.++|+.|+||||+++.+....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445555666666653 3456779999999999999999887754
No 89
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.01 E-value=0.0013 Score=49.70 Aligned_cols=53 Identities=26% Similarity=0.261 Sum_probs=38.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGL 212 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 212 (216)
.-.++.|+|.+|+|||||+..+.. . . -..++|+.....++...+.. +++.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~ 71 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGL 71 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCC
Confidence 456999999999999999999987 3 1 13678888777666666543 4444443
No 90
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.00 E-value=0.0008 Score=52.36 Aligned_cols=46 Identities=28% Similarity=0.250 Sum_probs=32.7
Q ss_pred CCccccHHHHHHHHHHhc---c---------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVM---E---------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++++|.+..+.++.+... . .-.+-+.|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 347888776666554432 1 011228999999999999999999876
No 91
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.99 E-value=0.00084 Score=53.99 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=36.2
Q ss_pred CCccccHHHHHHHHHHhcc--CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME--DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|......++.+.+.. ....-+-|+|..|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3478988888888877754 334456699999999999999999965
No 92
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.99 E-value=0.00038 Score=52.34 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999997643
No 93
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.99 E-value=0.00092 Score=54.96 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=36.1
Q ss_pred ccccHHHHHHHHHHhc-------------c--CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 135 VVGLQSTFERVWSCVM-------------E--DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|.+..++.+...+. . .....+-++|++|+|||++|+.+.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 6899988888887772 1 134678899999999999999999876
No 94
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.99 E-value=0.00049 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+.|.++|+.|+||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998764
No 95
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.98 E-value=0.00049 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 041535 155 GIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998754
No 96
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.97 E-value=0.004 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=24.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+++|+|+.|+|||||++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999988765
No 97
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.96 E-value=0.00049 Score=55.72 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++.+||+|.|-|||||||.+-.+---.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 468999999999999999988775544
No 98
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.96 E-value=0.00052 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998753
No 99
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.96 E-value=0.0016 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+++++|.+|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999987765
No 100
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.95 E-value=0.00051 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+|+|+|+.|+|||||++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345789999999999999999998765
No 101
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.95 E-value=0.00055 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998865
No 102
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.95 E-value=0.00069 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHH
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
....+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999865
No 103
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.94 E-value=0.00054 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 104
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.93 E-value=0.00055 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.+|+|+|+.|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998654
No 105
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.92 E-value=0.00074 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 106
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.92 E-value=0.00056 Score=50.29 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|+|+.|+||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998765
No 107
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.91 E-value=0.00062 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998654
No 108
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.00081 Score=56.75 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=37.5
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|.++.+++|.+.+.- ...+=|-++|++|+|||.||+.+.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3468999999988876531 246778899999999999999999976
No 109
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.91 E-value=0.0011 Score=52.42 Aligned_cols=46 Identities=28% Similarity=0.250 Sum_probs=33.1
Q ss_pred CCccccHHHHHHHHHHhc---c---------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVM---E---------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~---~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++++|.+..+.++.+... . .-.+-+.|+|+.|+|||||++.+.+..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 457888877666655442 1 011228999999999999999999876
No 110
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.91 E-value=0.00056 Score=51.51 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|+|+.|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998765
No 111
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.90 E-value=0.00074 Score=54.66 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=36.8
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|.+..++.+...+..+ .-+-++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999998888887664 357789999999999999998865
No 112
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.90 E-value=0.00073 Score=50.87 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
...+|+|+|+.|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999775
No 113
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.00087 Score=56.50 Aligned_cols=46 Identities=33% Similarity=0.360 Sum_probs=37.3
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|.++.+++|.+.+.- ...+=|-++|++|+|||+||+.+.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999998888776631 245668899999999999999999976
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.89 E-value=0.0018 Score=52.27 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=28.2
Q ss_pred HHHHHHHhccC--CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 142 FERVWSCVMED--TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 142 ~~~l~~~L~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+...+... ....+-|+|++|+||||||+.+++..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34444444443 45688999999999999999999876
No 115
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.89 E-value=0.0006 Score=51.28 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 041535 155 GIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 116
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.88 E-value=0.0014 Score=54.11 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=35.7
Q ss_pred CCccccHHHHHHHHHHhcc------------------------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME------------------------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~------------------------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+...+.. .....+-++|+.|+|||+||+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3478988888887776621 123468899999999999999999876
No 117
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.88 E-value=0.00052 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.|.|+|+.|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998764
No 118
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.87 E-value=0.00075 Score=54.55 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=24.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|+|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999999999999998865
No 119
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.87 E-value=0.00069 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|+|+.|+||||||+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999987654
No 120
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.00087 Score=49.56 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|+|+.|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998765
No 121
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.86 E-value=0.00057 Score=52.22 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.86 E-value=0.00079 Score=48.88 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+++++|..|+|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999998764
No 123
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.86 E-value=0.00062 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|.|.|+.|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998765
No 124
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.85 E-value=0.00081 Score=49.76 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999987654
No 125
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.84 E-value=0.00071 Score=52.52 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55799999999999999999997753
No 126
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.84 E-value=0.0036 Score=50.56 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=43.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCC---------CC-----cEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN---------HF-----DFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~---------~F-----~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-.++-|+|.+|+||||||..+.... .... .. ..++|++....++..++.+ ++++++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~ 169 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGID 169 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 56799999999999999999987653 1110 11 4789999999888887764 45666654
No 127
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.84 E-value=0.0039 Score=52.07 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=41.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCC----CCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSP----NHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-.++.|+|..|+|||||+..+.-.. ... ..-..++|+.....++...+. .+++.+++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~-~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~ 239 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC-QIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLD 239 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-ccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCC
Confidence 56799999999999999999775332 111 133568899887777766654 367777764
No 128
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0011 Score=56.10 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=37.1
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|.++.+++|.+.+.- ...+=|-++|++|+|||+||+.|.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3467899888888776631 246778899999999999999999876
No 129
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.83 E-value=0.0015 Score=53.78 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=37.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-+++.|+|.+|+|||||+..+.... . ..=..++|+.....++.. .++++++.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~--~~gg~VlyId~E~s~~~~-----ra~rlgv~ 112 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-Q--KMGGVAAFIDAEHALDPV-----YAKNLGVD 112 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH-----HHHHHTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEecccccchH-----HHHHcCCc
Confidence 56799999999999999999998765 2 111346778776666543 44455543
No 130
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.83 E-value=0.00089 Score=49.68 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|.|+.|+||||+++.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 131
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.83 E-value=0.00092 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|.|.|+.|+||||+++.+....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
No 132
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.80 E-value=0.0049 Score=50.34 Aligned_cols=59 Identities=15% Similarity=0.274 Sum_probs=43.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCC----CCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPN----HFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-.++.|+|.+|+||||||..+.... .... .-..++|++....++...+.. ++..++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~ 183 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVD 183 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 56799999999999999999988764 1111 234789999999888877653 45666654
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.79 E-value=0.00094 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.+.|+.|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997654
No 134
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.79 E-value=0.0009 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.79 E-value=0.0036 Score=51.31 Aligned_cols=58 Identities=29% Similarity=0.430 Sum_probs=40.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCC----cEEEEEEeCCccCHHHHHHHHHHHcCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHF----DFVIWVVVSKDLQLEKIQECVAKKIGL 212 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~ 212 (216)
.-.++.|+|..|+|||||+..+.... ...... ..++|+.....+....+ ..+++.+++
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~ 191 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGL 191 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCC
Confidence 67899999999999999999998764 111111 24588887776655544 345665554
No 136
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.79 E-value=0.0009 Score=49.53 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
...+|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 137
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.78 E-value=0.001 Score=49.08 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||+++.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 138
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00074 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997764
No 139
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.76 E-value=0.00089 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+|+|+|+.|+|||||++.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4569999999999999999999743
No 140
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.76 E-value=0.0012 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+.+-++|++|+|||+||+.+.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678889999999999999999987
No 141
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.76 E-value=0.0011 Score=56.24 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=28.0
Q ss_pred HHHHHHHhccCC-ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 142 FERVWSCVMEDT-IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 142 ~~~l~~~L~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+........ ...+.|+|++|+||||||+.+++..
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334444443333 6789999999999999999999876
No 142
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.76 E-value=0.00097 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|.|+.|+||||+++.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 143
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.75 E-value=0.00091 Score=51.23 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999998865
No 144
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.001 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+++.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998876
No 145
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.75 E-value=0.0008 Score=50.33 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|+|..|+|||||++.+....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988764
No 146
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.75 E-value=0.0015 Score=56.08 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=37.1
Q ss_pred CccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..++++.+++.. ...+-+-|+|..|+|||+||+.+.+..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 478999999988887742 344568899999999999999998875
No 147
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.74 E-value=0.00083 Score=48.83 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 148
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.74 E-value=0.0048 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999988766
No 149
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.74 E-value=0.00066 Score=55.15 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=34.0
Q ss_pred CccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..+..+...+......-+-++|..|+|||+||+.+.+..
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 478988766655444443333448899999999999999999876
No 150
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.73 E-value=0.0015 Score=56.24 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=36.6
Q ss_pred CCccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|.+..++.+...+..+ .-+-++|++|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 35789999888888777654 357789999999999999999866
No 151
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.73 E-value=0.0018 Score=51.62 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|-|.|++|+||||||+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 152
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.73 E-value=0.001 Score=50.05 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 56789999999999999999998765
No 153
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.73 E-value=0.0012 Score=51.48 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998754
No 154
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.72 E-value=0.00053 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|+|.|..|+||||+++.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999997654
No 155
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.72 E-value=0.0011 Score=48.61 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 36789999999999999999998765
No 156
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.72 E-value=0.0021 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|+|.|..|+|||||++.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56699999999999999999997765
No 157
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.71 E-value=0.0011 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 158
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0013 Score=55.00 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=36.8
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++.|.++.+++|.+.+.- ...+=+-++|++|+|||.||+.+.+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3467899888888776631 245667899999999999999999876
No 159
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.70 E-value=0.0011 Score=53.40 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+++|+|++|+|||||+..+..-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998765
No 160
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.70 E-value=0.0012 Score=51.70 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 161
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.69 E-value=0.00099 Score=51.36 Aligned_cols=23 Identities=39% Similarity=0.299 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~ 175 (216)
.-.+++|+|+.|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 56799999999999999999887
No 162
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.0015 Score=50.99 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcc-----CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 139 QSTFERVWSCVME-----DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 139 ~~~~~~l~~~L~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+...+.++..+.. ....+|.++|++|+||||+|+.+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3344445444443 246789999999999999999998865
No 163
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.69 E-value=0.00095 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999997644
No 164
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.69 E-value=0.0011 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.. .+++|+|+.|+|||||++.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 36 899999999999999999998654
No 165
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.69 E-value=0.0065 Score=51.29 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.++|.+|+||||++..+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987665
No 166
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.68 E-value=0.0021 Score=54.57 Aligned_cols=46 Identities=28% Similarity=0.275 Sum_probs=35.7
Q ss_pred CCccccHHHHHHHHHHh---ccC--CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCV---MED--TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L---~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+..++ ..+ ..+-+-++|++|+|||+||+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899998877654443 333 33568899999999999999999987
No 167
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.68 E-value=0.0012 Score=47.78 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
No 168
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.67 E-value=0.001 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997644
No 169
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0016 Score=55.29 Aligned_cols=45 Identities=29% Similarity=0.337 Sum_probs=37.0
Q ss_pred CccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++.|.++.+++|.+.+.- ...+=|-++|++|+|||+||+.|.+..
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 478899988888776531 356778899999999999999999876
No 170
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.64 E-value=0.0013 Score=49.38 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||+++.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 171
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.64 E-value=0.0014 Score=49.08 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|+|.|+.|+||||+++.+-...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999997763
No 172
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.63 E-value=0.0013 Score=49.20 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|.|+.|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998765
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.63 E-value=0.0021 Score=54.94 Aligned_cols=46 Identities=24% Similarity=0.241 Sum_probs=34.7
Q ss_pred CCccccHHHHHHHHHHhc---cC---------CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVM---ED---------TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~---~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..++++.+.+. .. -.+-+.++|++|+||||||+.+.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 357899887777666542 21 12347799999999999999999876
No 174
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.63 E-value=0.0015 Score=49.15 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||+++.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 175
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.63 E-value=0.0055 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.++|.+|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987766
No 176
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.61 E-value=0.0016 Score=52.45 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|+|..|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998864
No 177
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.61 E-value=0.0013 Score=52.83 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+++|+|..|+|||||++.+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 178
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.61 E-value=0.00084 Score=49.29 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=18.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998764
No 179
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.61 E-value=0.0014 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998874
No 180
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.61 E-value=0.00082 Score=49.47 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999987665
No 181
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.61 E-value=0.0025 Score=52.27 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=33.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQL 199 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~ 199 (216)
.-+++.|+|.+|+||||||.++.... . ..=..++|++....++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~--~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-Q--AAGGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEECCCCcCH
Confidence 56789999999999999999987654 1 11235788888776665
No 182
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.60 E-value=0.00075 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=16.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHH-Hh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQIN-NK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~-~~ 177 (216)
.-.+++|+|+.|+|||||++.+. ..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999998 53
No 183
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.58 E-value=0.0016 Score=47.81 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.+|.|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 184
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.58 E-value=0.0013 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997754
No 185
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.58 E-value=0.0012 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999997654
No 186
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.57 E-value=0.0026 Score=54.51 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+++|+|..|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 187
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.57 E-value=0.0014 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|+|||||++.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999884
No 188
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.57 E-value=0.0016 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|.|+.|+||||+++.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998765
No 189
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.55 E-value=0.00095 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.189 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
-.+++|+|..|+|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999764
No 190
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.55 E-value=0.0013 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999997643
No 191
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.55 E-value=0.0018 Score=49.01 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999997764
No 192
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.54 E-value=0.0012 Score=51.25 Aligned_cols=26 Identities=42% Similarity=0.486 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997754
No 193
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.53 E-value=0.0016 Score=49.19 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999986543
No 194
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.53 E-value=0.0015 Score=51.61 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+++|+|..|+|||||++.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5569999999999999999999884
No 195
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.53 E-value=0.0016 Score=48.56 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998864
No 196
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.53 E-value=0.0014 Score=51.40 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997644
No 197
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.52 E-value=0.0019 Score=49.38 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=24.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+||-|.|++|+||||.|+.+..+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999877
No 198
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.51 E-value=0.0015 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 199
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.51 E-value=0.0017 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHH
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~ 175 (216)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999987
No 200
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.51 E-value=0.0014 Score=51.63 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 56789999999999999999997643
No 201
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.51 E-value=0.0018 Score=49.08 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHH
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 202
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0024 Score=53.67 Aligned_cols=45 Identities=31% Similarity=0.372 Sum_probs=36.4
Q ss_pred CccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++-|.++.+++|.+.+.- ...+=|-++|++|+|||.||+.+.+..
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 367899888888776531 245778899999999999999999876
No 203
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.50 E-value=0.0011 Score=50.55 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997754
No 204
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.50 E-value=0.0015 Score=51.48 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 56799999999999999999997654
No 205
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.49 E-value=0.002 Score=48.98 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998765
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.49 E-value=0.0037 Score=51.29 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=28.5
Q ss_pred HHHHHHHhc--cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 142 FERVWSCVM--EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 142 ~~~l~~~L~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+.+.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3578899999999999999999986553
No 207
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.49 E-value=0.0024 Score=53.97 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=36.5
Q ss_pred CCccccHHHHHHHHHHhcc--------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME--------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+...+.. -..+-|-++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578999888888766622 134568899999999999999999876
No 208
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.49 E-value=0.0019 Score=47.91 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.++|+|..|+|||||++.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35688999999999999999998754
No 209
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.49 E-value=0.0016 Score=50.55 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55799999999999999999997643
No 210
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.48 E-value=0.0019 Score=48.88 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999986654
No 211
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.48 E-value=0.002 Score=47.47 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+++|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999988764
No 212
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.47 E-value=0.0038 Score=53.67 Aligned_cols=46 Identities=28% Similarity=0.247 Sum_probs=34.2
Q ss_pred CCccccHHHHHHHHHHhc---cC---------CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVM---ED---------TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~---~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|.+..+.++.+... .. -.+=+.|+|+.|+||||||+.+.+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457898887777665542 21 12238899999999999999999865
No 213
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0015 Score=51.01 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.+|.|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998755
No 214
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.46 E-value=0.0016 Score=50.74 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997754
No 215
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.46 E-value=0.002 Score=49.05 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|.|+.|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998876
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.45 E-value=0.0019 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|+|..|+|||||.+.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 217
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.44 E-value=0.0017 Score=50.95 Aligned_cols=26 Identities=42% Similarity=0.508 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55699999999999999999997754
No 218
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.43 E-value=0.002 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+++|+|..|+|||||++.+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999998765
No 219
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.43 E-value=0.0021 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|+|.|+.|+||||+++.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999987753
No 220
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.43 E-value=0.0017 Score=50.96 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999997754
No 221
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.43 E-value=0.0013 Score=59.78 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=36.2
Q ss_pred CccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..+++|.+++.. ....-+.++|..|+||||||+.+.+..
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 368888888887777642 245579999999999999999998865
No 222
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.41 E-value=0.0018 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999997754
No 223
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.40 E-value=0.0019 Score=50.51 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999997754
No 224
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.39 E-value=0.005 Score=47.35 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-..|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999987
No 225
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.39 E-value=0.0023 Score=50.34 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 456799999999999999999987643
No 226
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.39 E-value=0.0019 Score=51.36 Aligned_cols=26 Identities=42% Similarity=0.469 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55689999999999999999997754
No 227
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.39 E-value=0.0019 Score=50.91 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999997654
No 228
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.38 E-value=0.0055 Score=49.54 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=39.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLFN 214 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 214 (216)
.++-|.|.+|+|||||+.++.....+ ...=..++||.....++.. .++++|++.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~ 82 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDP 82 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCH
Confidence 37899999999999998887766511 1112468899988888764 367777654
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.37 E-value=0.0034 Score=50.56 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=28.5
Q ss_pred HHHHHHHHhccC---CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 141 TFERVWSCVMED---TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 141 ~~~~l~~~L~~~---~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+.+++... ....+-++|..|+|||+||..+++..
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444444555432 25678899999999999999999976
No 230
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.37 E-value=0.002 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 231
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.36 E-value=0.006 Score=48.50 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=33.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAK 208 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 208 (216)
.-.+++|+|.+|+|||||+..+.... ... .=..++|+.... +...+.+.++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~-~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW-GTA-MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH-HHT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHH-cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 45689999999999999999988766 222 111455655432 44455444433
No 232
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.35 E-value=0.0025 Score=51.97 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|+|.|+.|+||||||..+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998865
No 233
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.35 E-value=0.0024 Score=47.52 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999876
No 234
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.34 E-value=0.0028 Score=49.12 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|.|.|+.|+||||+|+.+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997764
No 235
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.34 E-value=0.0037 Score=55.01 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=36.1
Q ss_pred CccccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..++.+...+..+ ..+.|+|..|+||||||+.+....
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 3689888887777776655 588999999999999999999866
No 236
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.33 E-value=0.0025 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|+|.|+.|+||||+++.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997654
No 237
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.32 E-value=0.0028 Score=44.96 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987753
No 238
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.31 E-value=0.0047 Score=50.80 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=33.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 200 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 200 (216)
.-+++-|.|.+|+||||||..+.... . ..-..++|++....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~--~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HCCCeEEEEeCCCCccHH
Confidence 56689999999999999999987765 1 112357888887766643
No 239
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.28 E-value=0.0026 Score=48.27 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.++.|+|..|+|||||+..+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998654
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.28 E-value=0.003 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|+|.+|+||||++..+....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 46799999999999999999998766
No 241
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.28 E-value=0.0029 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987643
No 242
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.28 E-value=0.0027 Score=50.81 Aligned_cols=28 Identities=29% Similarity=0.616 Sum_probs=23.2
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 151 EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 151 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....++|+|+|-||+||||+|..+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHH
Confidence 3478999999999999999999876655
No 243
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.27 E-value=0.0026 Score=51.21 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..-.+++|+|+.|+|||||++.+..-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 46679999999999999999998754
No 244
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.27 E-value=0.0027 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 245
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.26 E-value=0.0057 Score=53.16 Aligned_cols=45 Identities=31% Similarity=0.362 Sum_probs=35.4
Q ss_pred CccccHHHHHHHHHHhc------cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVM------EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.++.++.+.+.+. .-...++.++|++|+||||||+.+....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36888887777755442 1246689999999999999999999876
No 246
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.25 E-value=0.0031 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..|.|.|+.|+||||+++.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 247
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.24 E-value=0.0031 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 041535 156 IVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998765
No 248
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.24 E-value=0.013 Score=47.30 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=37.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKK 209 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 209 (216)
.-.++-|.|.+|+||||||..+..+. ..++ ..++|++.. .+...+...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 45688899999999999999987665 2222 577777765 4566666666553
No 249
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.22 E-value=0.0018 Score=49.72 Aligned_cols=25 Identities=32% Similarity=0.232 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998764
No 250
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.21 E-value=0.0031 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.++|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 251
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.21 E-value=0.0056 Score=51.44 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=26.8
Q ss_pred HHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 145 VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 145 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+++.+....-.+++|+|+.|+|||||++.+....
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3333344567799999999999999999998765
No 252
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.21 E-value=0.0027 Score=49.97 Aligned_cols=24 Identities=42% Similarity=0.419 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
-.+++|+|..|+|||||++.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999764
No 253
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.0042 Score=45.17 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=26.7
Q ss_pred HHHHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHH
Q 041535 143 ERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 143 ~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.++.+.+.. .....|.|+|..|+|||||...+.+
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 445555555 5677889999999999999998864
No 254
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.0076 Score=46.13 Aligned_cols=55 Identities=22% Similarity=0.176 Sum_probs=34.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKKIGLF 213 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 213 (216)
.-.++.|.|.+|+|||||+..+...... .=..++|++... +...+.+.+ .+++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~--~~~~~~~~~-~~~g~~ 76 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE--HPVQVRQNM-AQFGWD 76 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS--CHHHHHHHH-HTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC--CHHHHHHHH-HHcCCC
Confidence 4568999999999999998877654411 113566776544 345554443 345543
No 255
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.19 E-value=0.003 Score=51.94 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 256
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.19 E-value=0.0033 Score=48.85 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...++.+.|.||+|||||+..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46788899999999999999998655
No 257
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.18 E-value=0.0032 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
...|+++|.+|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 258
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.17 E-value=0.003 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 56799999999999999999997754
No 259
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.17 E-value=0.02 Score=49.19 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988655
No 260
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0081 Score=44.12 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|.+|+|||||...+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999987754
No 261
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.14 E-value=0.0069 Score=44.38 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=27.1
Q ss_pred HHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 143 ERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 143 ~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..+.+ +.......|.|+|..|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 45566778899999999999999998854
No 262
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.14 E-value=0.0041 Score=46.53 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 137 GLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 137 G~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|.+...+.+.+.......-.|.|+|..|+|||||...+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 334444444454545566678999999999999998887654
No 263
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.13 E-value=0.0037 Score=47.97 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|.|+.|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 264
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.13 E-value=0.003 Score=46.39 Aligned_cols=21 Identities=43% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.|+|+|.+|+|||||+..+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999876
No 265
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.12 E-value=0.013 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|+|.+|+||||++..+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 266
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.12 E-value=0.0034 Score=44.81 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|.+|+|||||+..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3467899999999999999998754
No 267
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.022 Score=45.70 Aligned_cols=73 Identities=8% Similarity=0.059 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhcccCC-CCCcEEEEEEeCC-ccCHHHHHHHHHHHcC
Q 041535 137 GLQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKFLVSP-NHFDFVIWVVVSK-DLQLEKIQECVAKKIG 211 (216)
Q Consensus 137 G~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~-~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~ 211 (216)
|.++..+.|.+.+..+.....-++|+.|+||||+|..+.+...... .+.+. .++..+. ...++.+ +++++.+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHh
Confidence 3445666777777766677889999999999999999976420112 24444 5555543 4444443 44666554
No 268
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.12 E-value=0.007 Score=49.96 Aligned_cols=45 Identities=22% Similarity=0.157 Sum_probs=33.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 200 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 200 (216)
.-+++-|.|.+|+||||||..+.... . ..-..++|++....++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~-~--~~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA-Q--KAGGTCAFIDAEHALDPV 117 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH-H--HCCCeEEEEECCCChhHH
Confidence 45688889999999999999887654 1 122367888887766543
No 269
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.11 E-value=0.004 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|.|+|+.|+||||||+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998865
No 270
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.11 E-value=0.01 Score=53.64 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=37.2
Q ss_pred CCccccHHHHHHHHHHhcc---------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME---------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+...+.. .....+-++|+.|+|||+||+.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999988888877753 123378999999999999999998875
No 271
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.11 E-value=0.0034 Score=51.79 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 356799999999999999999998754
No 272
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.10 E-value=0.0035 Score=49.50 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.++.|+|.+|+|||||+..+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999988654
No 273
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.10 E-value=0.004 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+|.|.|++|+||+|.|+.+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998775
No 274
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.10 E-value=0.0023 Score=51.54 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+++|+|..|+|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356799999999999999999987643
No 275
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.09 E-value=0.0037 Score=45.90 Aligned_cols=25 Identities=40% Similarity=0.307 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|.+|+|||||++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568899999999999998887654
No 276
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.09 E-value=0.0042 Score=50.33 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|+|.+|+||||++..+....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999987665
No 277
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.08 E-value=0.004 Score=49.55 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 278
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.08 E-value=0.0085 Score=47.97 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+++++|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999987665
No 279
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.07 E-value=0.0036 Score=51.45 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 280
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.07 E-value=0.0042 Score=45.55 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 041535 155 GIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.+.+|+|..|+|||||+..|+-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999965
No 281
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.05 E-value=0.0042 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+++|+|.+|+||||++..+....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988766
No 282
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.05 E-value=0.0038 Score=45.81 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.|.++|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 283
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.04 E-value=0.0064 Score=44.47 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35678899999999999999998764
No 284
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.03 E-value=0.0041 Score=44.26 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-|.|+|..|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998754
No 285
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.02 E-value=0.0047 Score=47.46 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
...+|+|.|+.|+||||+++.+...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999998764
No 286
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.02 E-value=0.0039 Score=51.29 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45689999999999999999998754
No 287
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.01 E-value=0.002 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999987753
No 288
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.01 E-value=0.0056 Score=47.17 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999875
No 289
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.00 E-value=0.004 Score=51.31 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 290
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.99 E-value=0.0049 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|+|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998755
No 291
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.99 E-value=0.0033 Score=50.78 Aligned_cols=25 Identities=48% Similarity=0.610 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.+.++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999999865
No 292
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.98 E-value=0.0041 Score=51.43 Aligned_cols=26 Identities=35% Similarity=0.289 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45689999999999999999998754
No 293
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.97 E-value=0.0044 Score=51.35 Aligned_cols=27 Identities=22% Similarity=0.041 Sum_probs=23.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999999999999999998764
No 294
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.97 E-value=0.0042 Score=51.50 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45689999999999999999998754
No 295
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.97 E-value=0.0037 Score=45.00 Aligned_cols=25 Identities=40% Similarity=0.410 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|.+|+|||||...+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 296
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.96 E-value=0.0048 Score=43.97 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.|+|..|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 297
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.95 E-value=0.0043 Score=51.30 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 55789999999999999999998644
No 298
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.95 E-value=0.0046 Score=44.96 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.94 E-value=0.0071 Score=49.73 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=22.9
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 151 EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 151 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...-.+++|+|+.|+|||||++.+....
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3445599999999999999999886543
No 300
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.93 E-value=0.0047 Score=44.22 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|..|+|||||...+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999988653
No 301
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.93 E-value=0.0049 Score=48.16 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|.|-||+||||+|..+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 688999999999999999887665
No 302
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.93 E-value=0.0048 Score=44.04 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.|+|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987654
No 303
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.93 E-value=0.0046 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...++|+|..|+|||||++.+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987765
No 304
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.92 E-value=0.0049 Score=45.09 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467899999999999999988753
No 305
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.92 E-value=0.0049 Score=50.19 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.|+|+.|+|||||+..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998765
No 306
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.92 E-value=0.0051 Score=50.42 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=27.1
Q ss_pred HHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 145 VWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 145 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+++.+.. ..-.+++|+|..|+|||||++.+.+..
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444433 456799999999999999999999976
No 307
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.91 E-value=0.0049 Score=44.07 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
--|.|+|..|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999988764
No 308
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.91 E-value=0.0054 Score=43.67 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-|.|+|.+|+|||||...+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997654
No 309
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.90 E-value=0.0051 Score=44.44 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999999988763
No 310
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.0048 Score=44.15 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
--|.|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998743
No 311
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.89 E-value=0.0042 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=19.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.+++ +|+|..|+|||||.+.++..
T Consensus 18 ~~~I-~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTL-MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEE-EEEEETTSSHHHHHHHHHC-
T ss_pred CEEE-EEECCCCCCHHHHHHHHhCC
Confidence 3444 99999999999999998764
No 312
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.88 E-value=0.0051 Score=44.52 Aligned_cols=26 Identities=38% Similarity=0.432 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999999887654
No 313
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.88 E-value=0.0054 Score=43.58 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.|.|+|..|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987654
No 314
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.88 E-value=0.0076 Score=50.53 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
....+++|+|..|+|||||.+.+..-
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 35679999999999999999999883
No 315
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.88 E-value=0.0036 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45689999999999999999998754
No 316
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.88 E-value=0.0088 Score=44.48 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHH
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.....|+++|.+|+|||||...+.+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445688999999999999999865
No 317
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.87 E-value=0.018 Score=43.77 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFV 188 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~ 188 (216)
-..|.|-|+.|+||||+++.+.... . ...+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL-R-ERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH-H-TTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCCcc
Confidence 3578999999999999999999887 3 2345553
No 318
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.87 E-value=0.015 Score=45.00 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHH
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVA 207 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 207 (216)
...|.|.|+.|+||||+++.+.... . ...+.......-......-+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887 3 23455344443222222334444444
No 319
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.84 E-value=0.0058 Score=44.94 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.....|.|+|..|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35677899999999999999998765
No 320
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.84 E-value=0.0053 Score=43.82 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 041535 156 IVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~ 176 (216)
-|.|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999998854
No 321
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.84 E-value=0.0057 Score=43.70 Aligned_cols=24 Identities=33% Similarity=0.384 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
--|.|+|..|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458999999999999999987654
No 322
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.84 E-value=0.0065 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
-+++-|+|++|+||||||..+...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999998775
No 323
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.83 E-value=0.0064 Score=48.95 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.|+|+.|+||||||..+....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999998765
No 324
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.83 E-value=0.0065 Score=43.86 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.....|.|+|..|+|||||...+.+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 346678999999999999999987643
No 325
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.82 E-value=0.0062 Score=48.23 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|+|.|.||+||||+|..+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH
Confidence 4789999999999999999887665
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.82 E-value=0.0056 Score=44.17 Aligned_cols=25 Identities=36% Similarity=0.471 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|..|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4468999999999999999987654
No 327
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.82 E-value=0.0047 Score=56.03 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=34.3
Q ss_pred ccccHHHHHHHHHHhc----c---------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 135 VVGLQSTFERVWSCVM----E---------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.|.++.+++|.+.+. . ...+-|-++|++|+|||+||+.|.+..
T Consensus 206 IgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5678777777766542 1 245678899999999999999999876
No 328
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.81 E-value=0.0032 Score=51.74 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998644
No 329
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.80 E-value=0.007 Score=45.49 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.....|.|+|.+|+|||||+..+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346678999999999999999998764
No 330
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.80 E-value=0.0054 Score=51.46 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|.|+|+.|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999987654
No 331
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.80 E-value=0.0057 Score=44.97 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..--|.|+|.+|+|||||+..+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999877654
No 332
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.79 E-value=0.0066 Score=43.84 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3468899999999999999987543
No 333
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.79 E-value=0.0058 Score=50.85 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..-.+++|+|+.|+|||||++.+..-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 35678999999999999999999863
No 334
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.78 E-value=0.0061 Score=45.02 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999998874
No 335
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.78 E-value=0.006 Score=43.98 Aligned_cols=26 Identities=38% Similarity=0.321 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35678999999999999999998765
No 336
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.78 E-value=0.0063 Score=43.39 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.|.|+|..|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999988643
No 337
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.78 E-value=0.0062 Score=44.38 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|..|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999988754
No 338
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.78 E-value=0.0067 Score=43.40 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 041535 155 GIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
--|.|+|.+|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999853
No 339
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.77 E-value=0.0069 Score=44.36 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 45578999999999999999998764
No 340
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.76 E-value=0.0067 Score=44.87 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.8
Q ss_pred hccCCceEEEEEeCCCCcHHHHHHHHHH
Q 041535 149 VMEDTIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 149 L~~~~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
+.....-.|.|+|.+|+|||||+..+.+
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 3344566799999999999999999854
No 341
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.76 E-value=0.0061 Score=44.34 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.|.|+|..|+|||||...+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 35578999999999999999998764
No 342
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.76 E-value=0.0096 Score=45.06 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=26.4
Q ss_pred HHHHHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 142 FERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 142 ~~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+..++.+ ..-+-+-|+|++|+||||+|..+.+..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444444433 123468999999999999998888765
No 343
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.75 E-value=0.0061 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
--|.|+|..|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998754
No 344
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.75 E-value=0.0063 Score=43.58 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|+|..|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999997643
No 345
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.75 E-value=0.0061 Score=44.84 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..--|.|+|.+|+|||||+..+.+..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 34578899999999999998887653
No 346
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.75 E-value=0.019 Score=43.58 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=33.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHH
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAK 208 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 208 (216)
..|.+-|..|+||||+++.+.... .. ..+..++...-.....+-+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-EQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-HH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887 32 33433333332222234455566554
No 347
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.73 E-value=0.0068 Score=50.10 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+++|+|..|+|||||++.+....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999986643
No 348
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.73 E-value=0.0055 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 57899999999999999988754
No 349
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.72 E-value=0.0035 Score=46.88 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHH
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.....++|+|..|+|||||.+.+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4556899999999999999988764
No 350
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.70 E-value=0.0069 Score=43.64 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.|.|+|..|+|||||...+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999987653
No 351
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.69 E-value=0.0059 Score=45.26 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
...-|.|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 4557899999999999999987774
No 352
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.69 E-value=0.0067 Score=44.07 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
--|.|+|..|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987653
No 353
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.69 E-value=0.0055 Score=50.43 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45689999999999999999998754
No 354
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.68 E-value=0.0068 Score=44.02 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|+|..|+|||||+..+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999998754
No 355
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.68 E-value=0.0042 Score=54.59 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=33.0
Q ss_pred CCccccHHHHHHHHHHhccCCce-----------EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVMEDTIG-----------IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~~~~~-----------vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.++|.+..+..+.-.|.....+ -+-++|.+|+|||+||+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 44678777666665555443222 47899999999999999998764
No 356
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.67 E-value=0.017 Score=52.15 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=36.9
Q ss_pred CCccccHHHHHHHHHHhcc---------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME---------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..++|.+..++.+...+.. .....+-++|+.|+|||+||+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999888888776642 134478899999999999999998865
No 357
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.67 E-value=0.0068 Score=44.61 Aligned_cols=26 Identities=38% Similarity=0.443 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..--|.|+|..|+|||||...+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988754
No 358
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.67 E-value=0.0073 Score=43.83 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|+|..|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578899999999999999988543
No 359
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.67 E-value=0.007 Score=43.86 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999987653
No 360
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.66 E-value=0.0088 Score=48.76 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
....+++|+|..|+|||||.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999754
No 361
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0078 Score=44.27 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..--|.|+|..|+|||||...+.+..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34568899999999999999988764
No 362
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.0061 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+.+-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 55789999999999999999998754
No 363
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.65 E-value=0.018 Score=48.84 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 138 LQSTFERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+..+...+...+ ..+.|.|.+|+||||++..+....
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444555555555443 389999999999999999998876
No 364
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.65 E-value=0.007 Score=44.88 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 45578999999999999999987654
No 365
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.64 E-value=0.0083 Score=49.15 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
+..+|+|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999864
No 366
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.64 E-value=0.0075 Score=44.06 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|..|+|||||+..+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998753
No 367
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.63 E-value=0.0054 Score=44.41 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
--|.++|.+|+|||||+..+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999987753
No 368
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.63 E-value=0.0072 Score=43.75 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|..|+|||||...+.+..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999987754
No 369
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0075 Score=44.45 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999997654
No 370
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.61 E-value=0.0073 Score=44.87 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45578999999999999999987754
No 371
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.61 E-value=0.0068 Score=43.76 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..--|.|+|..|+|||||+..+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999986543
No 372
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0074 Score=44.61 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...--|.|+|..|+|||||+..+.+..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345678899999999999999988764
No 373
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.61 E-value=0.0072 Score=44.13 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.....|.|+|..|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788999999999999999987643
No 374
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.0078 Score=43.51 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4468999999999999999987754
No 375
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.58 E-value=0.0089 Score=49.87 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||||..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999987654
No 376
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.58 E-value=0.008 Score=45.07 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...-|.|+|.+|+|||||+..+.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578899999999999999998764
No 377
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.57 E-value=0.0058 Score=45.42 Aligned_cols=23 Identities=43% Similarity=0.440 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQIN 175 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~ 175 (216)
....|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999984
No 378
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.57 E-value=0.009 Score=54.73 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=36.0
Q ss_pred CccccHHHHHHHHHHhccC---------CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 134 SVVGLQSTFERVWSCVMED---------TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 134 ~~vG~~~~~~~l~~~L~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.++|.+..++.+...+... ....+-|+|..|+|||+||+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689988888877776431 23578899999999999999998875
No 379
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.56 E-value=0.0048 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+|.|+|.+|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999987754
No 380
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.56 E-value=0.0078 Score=44.25 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|..|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998763
No 381
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.55 E-value=0.0086 Score=44.47 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|.+|+|||||+..+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45678999999999999999988754
No 382
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.55 E-value=0.0095 Score=46.77 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998654
No 383
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.54 E-value=0.008 Score=45.03 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999988654
No 384
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.53 E-value=0.0083 Score=44.07 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|..|+|||||...+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 385
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.52 E-value=0.0082 Score=45.32 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.+|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988664
No 386
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.52 E-value=0.0085 Score=44.01 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998654
No 387
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0091 Score=43.97 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..--|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 34568999999999999999997743
No 388
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0092 Score=44.64 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||+..+.+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 35578999999999999999887653
No 389
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.51 E-value=0.0088 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|+|+|.+|+|||||...+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999998753
No 390
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.50 E-value=0.02 Score=47.60 Aligned_cols=54 Identities=15% Similarity=0.077 Sum_probs=35.3
Q ss_pred HHHHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc
Q 041535 143 ERVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL 197 (216)
Q Consensus 143 ~~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~ 197 (216)
-++++.+.. ..-..++|+|..|+|||||++.+.+........+.++ .+-+++..
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence 345565554 3566899999999999999998876431112334444 46666554
No 391
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.49 E-value=0.0087 Score=44.09 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..--|.|+|..|+|||||...+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998764
No 392
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.49 E-value=0.0091 Score=44.20 Aligned_cols=23 Identities=39% Similarity=0.381 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHH
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
.--|.|+|.+|+|||||...+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999998874
No 393
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.49 E-value=0.0095 Score=48.56 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
....+|+|+|.+|+|||||+..+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998654
No 394
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.47 E-value=0.009 Score=43.81 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.|.|+|..|+|||||...+.+..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 35578999999999999999987764
No 395
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.47 E-value=0.015 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+|.|+|+.|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 55799999999999999999998876
No 396
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.46 E-value=0.0093 Score=50.42 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=24.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+++|+|..|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456799999999999999999999876
No 397
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.46 E-value=0.0081 Score=44.55 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|..|+|||||+..+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999987754
No 398
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.46 E-value=0.017 Score=49.72 Aligned_cols=44 Identities=9% Similarity=-0.069 Sum_probs=33.7
Q ss_pred ccccHHHHHHHHHHh--ccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 135 VVGLQSTFERVWSCV--MEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 135 ~vG~~~~~~~l~~~L--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-+.+.+..+.+.+.. ...+..+|.+.|+.|+||||+|+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 355555555666655 23466899999999999999999999987
No 399
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.46 E-value=0.009 Score=43.95 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987654
No 400
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.44 E-value=0.0085 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.++.-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999865
No 401
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.44 E-value=0.0067 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 041535 156 IVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
-++|+|..|+|||||++.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999999875
No 402
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.0096 Score=43.63 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|..|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998754
No 403
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.41 E-value=0.0096 Score=43.66 Aligned_cols=26 Identities=27% Similarity=0.165 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 45678999999999999999987654
No 404
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.41 E-value=0.0057 Score=47.82 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.....|.|.|..|+||||+++.+....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999987765
No 405
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.41 E-value=0.0084 Score=46.03 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.....|+|+|..|+|||||...+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 356788999999999999999998765
No 406
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.41 E-value=0.0062 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.+++|+|..|+|||||++.+..-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998765
No 407
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.40 E-value=0.0099 Score=44.22 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-|.|+|..|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999987654
No 408
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.40 E-value=0.0094 Score=44.18 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=21.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.....|.|+|..|+|||||+..+.+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 346678999999999999999987654
No 409
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.40 E-value=0.0089 Score=44.44 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..--|.|+|..|+|||||...+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 45578899999999999999987543
No 410
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.40 E-value=0.0086 Score=44.33 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..--|.|+|..|+|||||...+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556889999999999999988754
No 411
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.39 E-value=0.017 Score=44.28 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+|+|.|+.|+||||+++.+....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 35699999999999999999998876
No 412
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.38 E-value=0.041 Score=46.78 Aligned_cols=64 Identities=22% Similarity=0.369 Sum_probs=47.2
Q ss_pred HHHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc-CHHHHHHHHHHH
Q 041535 144 RVWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAKK 209 (216)
Q Consensus 144 ~l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~ 209 (216)
+.++.|.. ..-..++|+|..|+|||+|++.+.+.. . +.+-+.++++-+.+.. ...++.+++.+.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~-~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV-A-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT-T-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhh-H-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 34555544 356689999999999999999998865 1 3455778888888876 446677777654
No 413
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.01 Score=43.61 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-|.|+|..|+|||||+..+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998654
No 414
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.01 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|.|+|..|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988753
No 415
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.36 E-value=0.01 Score=47.57 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=25.8
Q ss_pred HHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 142 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 142 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++.+.+. -.+++++|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 345555554 3588999999999999999998 54
No 416
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.35 E-value=0.0095 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 417
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.34 E-value=0.011 Score=45.56 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...++|.|++|+||||+|+.+....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998866
No 418
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.34 E-value=0.0094 Score=43.43 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999764
No 419
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.33 E-value=0.0095 Score=44.82 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..-.|.|+|.+|+|||||...+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457889999999999999998764
No 420
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.29 E-value=0.0084 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-.+++|+|..|+|||||++.++.-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 421
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.28 E-value=0.01 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|+|+.|+|||||++.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 899999999999999999997654
No 422
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.28 E-value=0.011 Score=43.90 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.|.|+|..|+|||||+..+.+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 45678999999999999999987654
No 423
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.28 E-value=0.012 Score=44.07 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|.+|+|||||+..+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987654
No 424
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.27 E-value=0.012 Score=43.77 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-|.|+|..|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999988754
No 425
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.27 E-value=0.011 Score=48.55 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|+|..|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999998755
No 426
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.26 E-value=0.012 Score=44.69 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|.+|+|||||+..+.+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999999987753
No 427
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.25 E-value=0.011 Score=51.40 Aligned_cols=26 Identities=38% Similarity=0.645 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999998754
No 428
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.25 E-value=0.046 Score=46.71 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=47.0
Q ss_pred HHHHhcc-CCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCcc-CHHHHHHHHHHH
Q 041535 145 VWSCVME-DTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDL-QLEKIQECVAKK 209 (216)
Q Consensus 145 l~~~L~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~ 209 (216)
.++.|.. ..-..++|+|..|+|||+|++.+.+.. .+.+-+.++++-+++.. ...++.+++.+.
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 3444543 356679999999999999999998875 13456788999998877 456777777654
No 429
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.25 E-value=0.011 Score=44.00 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 35678999999999999999988654
No 430
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.24 E-value=0.014 Score=41.57 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHH
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
..+..|+|+.|.|||||...++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999863
No 431
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.23 E-value=0.011 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999854
No 432
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.23 E-value=0.0077 Score=54.83 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=36.9
Q ss_pred CCccccHHHHHHHHHHhcc-------------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 133 TSVVGLQSTFERVWSCVME-------------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 133 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..+.|.+..++.+.+.+.- .....+.++|++|+||||||+.+.+..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4468888888888877642 134568899999999999999999876
No 433
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.20 E-value=0.04 Score=41.48 Aligned_cols=31 Identities=23% Similarity=0.575 Sum_probs=25.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEE
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFV 188 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~ 188 (216)
+.|+|=|.-|+||||+++.+.+.. ...++++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L---~~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL---VKDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TTTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH---HCCCCEE
Confidence 468889999999999999999987 3345443
No 434
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.18 E-value=0.014 Score=42.91 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999987644
No 435
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.16 E-value=0.011 Score=43.89 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=20.2
Q ss_pred eEEEEE-eCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLY-GMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~-G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|+ +.||+||||+|..+....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l 26 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL 26 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH
Confidence 688898 678899999999886655
No 436
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.14 E-value=0.013 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|.+|+|||||+..+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987654
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.012 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+++|+|..|+|||||++.+..-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999998754
No 438
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.012 Score=51.77 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45699999999999999999998754
No 439
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.10 E-value=0.017 Score=42.72 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.++.|+|+.|+||||++..+..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999998554433
No 440
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.10 E-value=0.0037 Score=46.58 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=24.5
Q ss_pred HHHHhccCCceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 145 VWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 145 l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
+.+.+...+.-.|.|+|..|+|||||...+.+.
T Consensus 21 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 334444455667899999999999999777643
No 441
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.08 E-value=0.0097 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHhc
Q 041535 157 VGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 157 i~I~G~gGvGKTtLa~~v~~~~ 178 (216)
|+|+|..|+|||||++.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4999999999999999998754
No 442
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.08 E-value=0.0086 Score=43.96 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987654
No 443
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.08 E-value=0.007 Score=44.00 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=10.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..-|.|+|..|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999987654
No 444
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.07 E-value=0.018 Score=43.31 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+|.|.|+.|+||||+++.+....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999987754
No 445
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.06 E-value=0.013 Score=43.16 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|..|+|||||...+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468899999999999999986543
No 446
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.06 E-value=0.018 Score=44.27 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-..|.|-|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 447
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.06 E-value=0.013 Score=46.82 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=25.8
Q ss_pred HHHHHHHhccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 142 FERVWSCVMEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 142 ~~~l~~~L~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++++...+. -.+++|+|+.|+|||||.+.+....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 344555543 3588999999999999999997644
No 448
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.05 E-value=0.014 Score=44.18 Aligned_cols=24 Identities=42% Similarity=0.400 Sum_probs=20.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
....|.|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998864
No 449
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.02 E-value=0.036 Score=45.31 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=23.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 151 EDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 151 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+++.+.|.||+||||+|..+....
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 4567888899999999999999887655
No 450
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.02 E-value=0.031 Score=47.07 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHhcc-----------CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 136 VGLQSTFERVWSCVME-----------DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 136 vG~~~~~~~l~~~L~~-----------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|.++-.+.+.+.+.. +....++|+|.+|+|||||...+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 4677777777776642 124589999999999999999998753
No 451
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.02 E-value=0.018 Score=44.72 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999997653
No 452
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.98 E-value=0.015 Score=46.59 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|+|+|.+|+|||||...+....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 46789999999999999999998754
No 453
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.97 E-value=0.013 Score=44.01 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..--|.|+|..|+|||||...+.+..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34578999999999999999987653
No 454
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.94 E-value=0.015 Score=43.77 Aligned_cols=26 Identities=23% Similarity=0.086 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-+.|.|.|..|+||||||..+....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34678899999999999999987654
No 455
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.93 E-value=0.034 Score=43.34 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|+|+|..|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998754
No 456
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.93 E-value=0.059 Score=40.99 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-..|.+-|+.|+||||+++.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999999999988
No 457
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.92 E-value=0.017 Score=45.07 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.|+++|.+|+|||||...+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 578999999999999999998763
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.92 E-value=0.014 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|..|+|||||++.+..-.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 459
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.91 E-value=0.019 Score=44.01 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|-+.|.||+||||+|-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 46778999999999988887766
No 460
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.91 E-value=0.022 Score=42.94 Aligned_cols=27 Identities=11% Similarity=0.157 Sum_probs=23.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|+|+||.|+||+|.|..+-+..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 356799999999999999999987644
No 461
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.90 E-value=0.02 Score=49.40 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|.++|+.|+||||+|+.+....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999997654
No 462
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.89 E-value=0.015 Score=50.93 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 356789999999999999999997654
No 463
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.89 E-value=0.021 Score=43.69 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.....|.|.|+.|+||||+++.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999877
No 464
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.89 E-value=0.017 Score=46.26 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|+|+|.+|+|||||...+....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998754
No 465
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.88 E-value=0.053 Score=44.05 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=30.5
Q ss_pred cCCceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHH
Q 041535 151 EDTIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLE 200 (216)
Q Consensus 151 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 200 (216)
....+++.+.|.||+||||+|..+.... . ..=..++-|......++.
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~l-a--~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQL-A--KVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH-T--TSSSCEEEEECCSSCHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHH-H--hCCCcEEEEECCCCCChh
Confidence 3456788888999999999999987766 2 222234445544443433
No 466
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.86 E-value=0.0071 Score=48.66 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
-.+++|+|+.|+|||||.+.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999998653
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.86 E-value=0.022 Score=41.60 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHH
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
...-.|.|+|..|+|||||...+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4566799999999999999999854
No 468
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.84 E-value=0.018 Score=43.82 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 041535 156 IVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
-|.|+|-+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 5779999999999999987654
No 469
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.82 E-value=0.015 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999997654
No 470
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.80 E-value=0.019 Score=48.91 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|.++|+.|+||||+++.+....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345688999999999999999998765
No 471
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.80 E-value=0.0094 Score=44.91 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.|+|..|+|||||...+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 46678999999999999999998764
No 472
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.018 Score=43.54 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.--|.|+|..|+|||||...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999987654
No 473
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.76 E-value=0.013 Score=44.86 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|+|.|-||+||||+|..+-...
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~l 24 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIM 24 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 37779999999999999987655
No 474
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.73 E-value=0.059 Score=43.88 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=36.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhcccCCCCCcEEEEEEeCCccCHHHHHHHHHHH
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKFLVSPNHFDFVIWVVVSKDLQLEKIQECVAKK 209 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 209 (216)
.-.++.|.|.+|+||||||..+..+. .. .=..++|++. ..+...+...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~-a~--~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA-LN--DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HH--TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HH--cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 44688899999999999999988776 22 2235666654 45667776666543
No 475
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.73 E-value=0.019 Score=43.23 Aligned_cols=24 Identities=33% Similarity=0.402 Sum_probs=19.2
Q ss_pred eEEEEE-eCCCCcHHHHHHHHHHhc
Q 041535 155 GIVGLY-GMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 155 ~vi~I~-G~gGvGKTtLa~~v~~~~ 178 (216)
++|+|+ +-||+||||++..+....
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~l 25 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYL 25 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 367786 678999999999886654
No 476
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.72 E-value=0.04 Score=44.63 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHhccCCc-eEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 138 LQSTFERVWSCVMEDTI-GIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 138 ~~~~~~~l~~~L~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.+...+.+.+.+..+.+ ..+-++|+.|+||||+|+.+....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 34566677777776654 468899999999999999998765
No 477
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.72 E-value=0.018 Score=47.50 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
++++|+|+|.+|+|||||...+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 57789999999999999999988654
No 478
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.70 E-value=0.02 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999874
No 479
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.66 E-value=0.018 Score=44.59 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.|+++|.+|+|||||...+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568999999999999999988654
No 480
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.65 E-value=0.043 Score=42.93 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|.++|..|+|||||...+.+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998764
No 481
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.60 E-value=0.016 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.073 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
-..++|+|..|+|||||++.+..-.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458999999999999999987654
No 482
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.59 E-value=0.024 Score=47.22 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-..++|+|.+|+|||||.+.+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999884
No 483
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.58 E-value=0.041 Score=43.40 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....|+|+|..|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 46689999999999999999998764
No 484
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.57 E-value=0.017 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
-.|.|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999987654
No 485
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.57 E-value=0.02 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCcHHHHHHHH
Q 041535 155 GIVGLYGMGGVGKTTLLTQI 174 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v 174 (216)
.+++|+|..|+|||||++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
No 486
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.55 E-value=0.025 Score=46.62 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCceEEEEEe-CCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYG-MGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G-~gGvGKTtLa~~v~~~~ 178 (216)
...++|+|+| -||+||||+|-.+....
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHH
Confidence 3689999995 89999999998876654
No 487
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.53 E-value=0.052 Score=42.67 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHHHHHHhccC--CceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 142 FERVWSCVMED--TIGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 142 ~~~l~~~L~~~--~~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
..-+..+|... ...-|-++|++|+|||.||..+.+.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34466666553 2457999999999999999999874
No 488
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.53 E-value=0.014 Score=47.99 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 041535 155 GIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 155 ~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
--|+|+|..|+|||||+..++..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 44699999999999999998764
No 489
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.48 E-value=0.044 Score=47.93 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=23.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....+|.|.|+.|+||||+|+.+....
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998765
No 490
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.47 E-value=0.061 Score=46.72 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHHh--ccCCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 136 VGLQSTFERVWSCV--MEDTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 136 vG~~~~~~~l~~~L--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
+.+.+-.+.+.+.. ......+|.+.|+.|+||||+|+.+....
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 34444444555544 23456789999999999999999998764
No 491
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.42 E-value=0.0086 Score=44.37 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=5.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~ 177 (216)
.-.|.|+|..|+|||||...+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988765
No 492
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.42 E-value=0.018 Score=43.32 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCcHHHHHHH-HHHh
Q 041535 154 IGIVGLYGMGGVGKTTLLTQ-INNK 177 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~-v~~~ 177 (216)
.-.|.|+|..|+|||||... +.+.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 44688999999999999998 5443
No 493
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.40 E-value=0.03 Score=46.05 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHH
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
..+.+|+|..|.|||||...|+-
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 34999999999999999999985
No 494
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.39 E-value=0.026 Score=44.03 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...|+++|.+|+|||||...+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999998743
No 495
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.35 E-value=0.015 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 152 DTIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 152 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
..-.+++|+|..|+|||||++.+..-.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 356789999999999999999997654
No 496
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.33 E-value=0.026 Score=46.57 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Q 041535 156 IVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 156 vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
.|+|+|.+|+|||||...+.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987753
No 497
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.33 E-value=0.029 Score=49.44 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
...+|.+.|+.|+||||+|+.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998764
No 498
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.28 E-value=0.028 Score=46.01 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYGMGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 178 (216)
....++|+|..|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999987653
No 499
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.28 E-value=0.033 Score=41.80 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHH
Q 041535 154 IGIVGLYGMGGVGKTTLLTQINN 176 (216)
Q Consensus 154 ~~vi~I~G~gGvGKTtLa~~v~~ 176 (216)
..+..|+|..|.||||+...|+-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999998853
No 500
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.28 E-value=0.023 Score=45.04 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.3
Q ss_pred CceEEEEEe---CCCCcHHHHHHHHHHhc
Q 041535 153 TIGIVGLYG---MGGVGKTTLLTQINNKF 178 (216)
Q Consensus 153 ~~~vi~I~G---~gGvGKTtLa~~v~~~~ 178 (216)
..++|+|++ -||+||||+|..+....
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 456788886 89999999999887655
Done!