BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041537
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 201/334 (60%), Gaps = 18/334 (5%)
Query: 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPV 86
+K V++LG+GW ISFLK +D Y+V ++SP++YF FTPLLPS GTV+ +SI EP+
Sbjct: 41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI 100
Query: 87 RNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNID-------------KETRDFSLEYDY 133
N K+ + ++EAEA I+ +N V KS + ++YDY
Sbjct: 101 VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDY 160
Query: 134 LIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHF 193
LI AVGA+ NTFG PGV + HFLKE+ ++ +IRRT EKA L + ER+R L
Sbjct: 161 LISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSI 220
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEK 253
V+VGGGPTGVE A EL DY+ +DL P + + V+I L+++ +LN F++++SS+A+
Sbjct: 221 VVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQS 280
Query: 254 KFQRDGIEVLTECRVVNVSDKEITMKIK-STGAVC--SIPHGLVLWSTGVGTRPAIKDFM 310
+ I+V V V +K++ K K G + +IP+G ++W+TG RP I D
Sbjct: 281 HLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLF 340
Query: 311 EQIGQ--GKRRVLATNEWLRVKECENVYALGDCA 342
++I + +R LA N++L+VK N++A+GD A
Sbjct: 341 KKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNA 374
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 17/168 (10%)
Query: 393 NKHLNDVTDLLKD-PQGNPRRE-------VDIEGFTLALSHVDTQMKSLPATAQVAAQQG 444
NK +TDL K P+ N + + ++G + D LP TAQVA Q+
Sbjct: 330 NKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEA 389
Query: 445 AYLARNFNRRQQCKEHPEXXXXXXXXXXXXXXXXXYKHF-----GQFAPLGGEQAAAELP 499
YLA+NF++ Q + +K F G A LG E+A A +
Sbjct: 390 EYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIR 449
Query: 500 GD----WVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRD 543
+ G T +LW +Y S +S R+R+ V DW + F RD
Sbjct: 450 SGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 497
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 201/334 (60%), Gaps = 18/334 (5%)
Query: 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPV 86
+K V++LG+GW ISFLK +D Y+V ++SP++YF FTPLLPS GTV+ +SI EP+
Sbjct: 10 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI 69
Query: 87 RNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNID-------------KETRDFSLEYDY 133
N K+ + ++EAEA I+ +N V KS + ++YDY
Sbjct: 70 VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDY 129
Query: 134 LIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHF 193
LI AVGA+ NTFG PGV + HFLKE+ ++ +IRRT EKA L + ER+R L
Sbjct: 130 LISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSI 189
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEK 253
V+VGGGPTGVE A EL DY+ +DL P + + V+I L+++ +LN F++++SS+A+
Sbjct: 190 VVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQS 249
Query: 254 KFQRDGIEVLTECRVVNVSDKEITMKIK-STGAVC--SIPHGLVLWSTGVGTRPAIKDFM 310
+ I+V V V +K++ K K G + +IP+G ++W+TG RP I D
Sbjct: 250 HLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLF 309
Query: 311 EQIGQ--GKRRVLATNEWLRVKECENVYALGDCA 342
++I + +R LA N++L+VK N++A+GD A
Sbjct: 310 KKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNA 343
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 17/168 (10%)
Query: 393 NKHLNDVTDLLKD-PQGNPRRE-------VDIEGFTLALSHVDTQMKSLPATAQVAAQQG 444
NK +TDL K P+ N + + ++G + D LP TAQVA Q+
Sbjct: 299 NKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEA 358
Query: 445 AYLARNFNRRQQCKEHPEXXXXXXXXXXXXXXXXXYKHF-----GQFAPLGGEQAAAELP 499
YLA+NF++ Q + +K F G A LG E+A A +
Sbjct: 359 EYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIR 418
Query: 500 GD----WVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRD 543
+ G T +LW +Y S +S R+R+ V DW + F RD
Sbjct: 419 SGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 466
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 135/320 (42%), Gaps = 46/320 (14%)
Query: 32 VLLGTGWAGISFLKDLDVSSYDVQVVSPQN---YFAFTPLLPSVTCGTVEA--RSIAEPV 86
V++G AG+S + + + VV+ + Y LP V G + + + IA V
Sbjct: 40 VIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNV 99
Query: 87 RNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146
+ K + + E K+D K V+ + K+ +FS YD L+IA G +
Sbjct: 100 KTFRDKYGIDAKVRH-EVTKVDTEKKIVYAEHTKTKDVFEFS--YDRLLIATGVRPVMPE 156
Query: 147 TPGV-LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEF 205
G L+ H LK + DA++I +T+ E + I+GGG G+E
Sbjct: 157 WEGRDLQGVHLLKTIPDAERILKTL---------------ETNKVEDVTIIGGGAIGLEM 201
Query: 206 AAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTE 265
A E + L V+ +I+ DHI +D ++ + K+ + IE+LT
Sbjct: 202 A--------ETFVELGKKVR------MIERNDHIGTIYDGDMAEYIYKEADKHHIEILTN 247
Query: 266 CRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFME--QIGQGKRRVLAT 323
V E +++ LVL S VG +P DF+E I + +
Sbjct: 248 ENVKAFKGNERVEAVETDKGTYKAD--LVLVS--VGVKPNT-DFLEGTNIRTNHKGAIEV 302
Query: 324 NEWLRVKECENVYALGDCAT 343
N +++ ++VYA GDCAT
Sbjct: 303 NAYMQTN-VQDVYAAGDCAT 321
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 116/280 (41%), Gaps = 43/280 (15%)
Query: 69 LPSVTCGTVEA--RSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP V G + + + IA V+ K + + E K+D K V+ + K+ +
Sbjct: 80 LPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRH-EVTKVDTEKKIVYAEHTKTKDVFE 138
Query: 127 FSLEYDYLIIAVGAQVNTFGTPGV-LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEE 185
FS YD L+IA G + G L+ H LK + DA++I +T+
Sbjct: 139 FS--YDRLLIATGVRPVXPEWEGRDLQGVHLLKTIPDAERILKTL--------------- 181
Query: 186 ERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245
E + I+GGG G+E A E + L V+ I+ DHI +D
Sbjct: 182 ETNKVEDVTIIGGGAIGLEXA--------ETFVELGKKVR------XIERNDHIGTIYDG 227
Query: 246 RISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305
+ + K+ + IE+LT V E +++ LVL S VG +P
Sbjct: 228 DXAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKAD--LVLVS--VGVKPN 283
Query: 306 IKDFME--QIGQGKRRVLATNEWLRVKECENVYALGDCAT 343
DF+E I + + N + + ++VYA GDCAT
Sbjct: 284 T-DFLEGTNIRTNHKGAIEVNAYXQTN-VQDVYAAGDCAT 321
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 26 REKKRVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSI 82
R VV+LG G G+ +K+ S ++V ++S +YF F P P V G E I
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDI 61
Query: 83 AEPVRNIIKKRNAEIQFWEAEAIKIDA-AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
A P+R+ ++++ I F A +IDA A+N N ++ YDYL+IA G +
Sbjct: 62 AFPIRHYVERKG--IHFIAQSAEQIDAEAQNITLADGN--------TVHYDYLMIATGPK 111
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
+ PG + ++ + R + PG IV G
Sbjct: 112 LAFENVPGSDPHEGPVQSISTVDHAERAFAEYQALLREPG------------PIVIGAMA 159
Query: 202 GVEFAAELHDY---IQEDLINLYPTVKDLV-RITLIQSGDHILNSFDERIS---SFAEKK 254
G ++Y + DL ++D + T I S +I + + + K
Sbjct: 160 GASCFGPAYEYAMIVASDLKKR--GMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKG 217
Query: 255 FQRDGIEVLTECRVVNVSDKEI 276
+ +GIE T C+V V D ++
Sbjct: 218 LKEEGIEAYTNCKVTKVEDNKM 239
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 26 REKKRVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSI 82
R VV+LG G G+ +K+ S ++V ++S +YF F P P V G E I
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDI 61
Query: 83 AEPVRNIIKKRNAEIQFWEAEAIKIDA-AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
A P+R+ ++++ I F A +IDA A+N N ++ YDYL+IA G +
Sbjct: 62 AFPIRHYVERKG--IHFIAQSAEQIDAEAQNITLADGN--------TVHYDYLMIATGPK 111
Query: 142 VNTFGTPG 149
+ PG
Sbjct: 112 LAFENVPG 119
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 26 REKKRVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSI 82
R VV+LG G G+ +K+ S ++V ++S +YF F P P V G E I
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDI 61
Query: 83 AEPVRNIIKKRNAEIQFWEAEAIKIDA-AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
A P+R+ ++++ I F A +IDA A+N N ++ YDYL+IA G +
Sbjct: 62 AFPIRHYVERKG--IHFIAQSAEQIDAEAQNITLADGN--------TVHYDYLMIATGPK 111
Query: 142 VNTFGTPG 149
+ PG
Sbjct: 112 LAFENVPG 119
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 26 REKKRVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSI 82
R VV+LG G G+ +K+ S ++V ++S +YF F P P V G E I
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDI 61
Query: 83 AEPVRNIIKKRNAEIQFWEAEAIKIDA-AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
A P+R+ ++++ I F A +IDA A+N N ++ YDYL+IA G +
Sbjct: 62 AFPIRHYVERKG--IHFIAQSAEQIDAEAQNITLADGN--------TVHYDYLMIATGPK 111
Query: 142 VNTFGTPG 149
+ PG
Sbjct: 112 LAFENVPG 119
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 26 REKKRVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSI 82
R VV+LG G G+ +K+ S ++V ++S +YF F P P V G E I
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDI 61
Query: 83 AEPVRNIIKKRNAEIQFWEAEAIKIDA-AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
A P+R+ ++++ I F A +IDA A+N N ++ YDYL+IA G +
Sbjct: 62 AFPIRHYVERKG--IHFIAQSAEQIDAEAQNITLADGN--------TVHYDYLMIATGPK 111
Query: 142 VNTFGTPG 149
+ PG
Sbjct: 112 LAFENVPG 119
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 26 REKKRVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSI 82
R VV+LG G G+ +K+ S ++V ++S +YF F P P V G E I
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDI 61
Query: 83 AEPVRNIIKKRNAEIQFWEAEAIKIDA-AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
A P+R+ ++++ I F A +IDA A+N N ++ YDYL+IA G +
Sbjct: 62 AFPIRHYVERKG--IHFIAQSAEQIDAEAQNITLADGN--------TVHYDYLMIATGPK 111
Query: 142 VNTFGTPG 149
+ PG
Sbjct: 112 LAFENVPG 119
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 30 RVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPV 86
VV+LG G G+ +K+ S ++V ++S +YF F P P V G E IA P+
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 62
Query: 87 RNIIKKRNAEIQFWEAEAIKIDA-AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145
R+ ++++ I F A +IDA A+N N ++ YDYL+IA G ++
Sbjct: 63 RHYVERKG--IHFIAQSAEQIDAEAQNITLADGN--------TVHYDYLMIATGPKLAFE 112
Query: 146 GTPG 149
PG
Sbjct: 113 NVPG 116
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 30 RVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPV 86
VV+LG G G+ +K+ S ++V ++S +YF F P P V G E IA P+
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 62
Query: 87 RNIIKKRNAEIQFWEAEAIKIDA-AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145
R+ ++++ I F A +IDA A+N N ++ YDYL+IA G ++
Sbjct: 63 RHYVERKG--IHFIAQSAEQIDAEAQNITLADGN--------TVHYDYLMIATGPKLAFE 112
Query: 146 GTPG 149
PG
Sbjct: 113 NVPG 116
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 128/325 (39%), Gaps = 58/325 (17%)
Query: 31 VVLLGTGWAGISFLKDLDVSSY--DVQVVSPQNYFA--FTPLLPSVTCGTVEARSIAEPV 86
VV++GTG AG+ L S + ++++V PL + G A S+
Sbjct: 7 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66
Query: 87 RNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF- 145
+ +N ++ + I+ + +V +L+YD L++A G +
Sbjct: 67 PDAYAAQNIQL-LGGTQVTAINRDRQQVILSDG-------RALDYDRLVLATGGRPRPLP 118
Query: 146 ---GTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTG 202
G G N +L+ LEDA+ IRR L + R V++GGG G
Sbjct: 119 VASGAVGKANNFRYLRTLEDAECIRRQ------------LIADNR-----LVVIGGGYIG 161
Query: 203 VEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE-RISSFAEKKFQRDGIE 261
+E AA +K + +TL+ + +L +S+F E + G++
Sbjct: 162 LEVAAT--------------AIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVD 207
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCS----IPHGLVLWSTGVGTRPAIKDFMEQIGQGK 317
+ T +V T + K T +C +P LV+ G+G P + G
Sbjct: 208 IRTGTQVCGFEMS--TDQQKVTAVLCEDGTRLPADLVI--AGIGLIPNC-ELASAAGLQV 262
Query: 318 RRVLATNEWLRVKECENVYALGDCA 342
+ NE ++ + + A+GDCA
Sbjct: 263 DNGIVINEHMQTSD-PLIMAVGDCA 286
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 128/325 (39%), Gaps = 58/325 (17%)
Query: 31 VVLLGTGWAGISFLKDLDVSSY--DVQVVSPQNYFA--FTPLLPSVTCGTVEARSIAEPV 86
VV++GTG AG+ L S + ++++V PL + G A S+
Sbjct: 6 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65
Query: 87 RNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF- 145
+ +N ++ + I+ + +V +L+YD L++A G +
Sbjct: 66 PDAYAAQNIQL-LGGTQVTAINRDRQQVILSDG-------RALDYDRLVLATGGRPRPLP 117
Query: 146 ---GTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTG 202
G G N +L+ LEDA+ IRR L + R V++GGG G
Sbjct: 118 VASGAVGKANNFRYLRTLEDAECIRRQ------------LIADNR-----LVVIGGGYIG 160
Query: 203 VEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE-RISSFAEKKFQRDGIE 261
+E AA +K + +TL+ + +L +S+F E + G++
Sbjct: 161 LEVAAT--------------AIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVD 206
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCS----IPHGLVLWSTGVGTRPAIKDFMEQIGQGK 317
+ T +V T + K T +C +P LV+ G+G P + G
Sbjct: 207 IRTGTQVCGFEMS--TDQQKVTAVLCEDGTRLPADLVI--AGIGLIPNC-ELASAAGLQV 261
Query: 318 RRVLATNEWLRVKECENVYALGDCA 342
+ NE ++ + + A+GDCA
Sbjct: 262 DNGIVINEHMQTSD-PLIMAVGDCA 285
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 54 VQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNE 113
+ ++S + YF FTP P + G + I+ P+ ++ K N I+F +A ID N
Sbjct: 30 ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFN--IEFINEKAESIDPDANT 87
Query: 114 VFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDC 173
V +S +EYDYL+IA G ++ FG G EN + E A + ++ + +
Sbjct: 88 VTTQSGK-------KIEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQKKLQEL 139
Query: 174 FEK------AVLPGLS 183
+ +PG+S
Sbjct: 140 YANPGPVVIGAIPGVS 155
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 54 VQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNE 113
+ ++S + YF FTP P + G + I+ P+ ++ K N I+F +A ID N
Sbjct: 30 ITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFN--IEFINEKAESIDPDANT 87
Query: 114 VFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDC 173
V +S +EYDYL+IA G ++ FG G EN + E A + ++ + +
Sbjct: 88 VTTQSGK-------KIEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQKKLQEL 139
Query: 174 FEK------AVLPGLS 183
+ +PG+S
Sbjct: 140 YANPGPVVIGAIPGVS 155
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 136/333 (40%), Gaps = 32/333 (9%)
Query: 30 RVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPV 86
+V++LG + ++ LK L S DV+V++ + F P LP V G + + +
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDL 62
Query: 87 RNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146
+ ++ IQF E KIDA + V+ + EYDY+I+ +GA + T
Sbjct: 63 SEALPEKG--IQFQEGTVEKIDAKSSMVYYTKPDGSMAEE---EYDYVIVGIGAHLATEL 117
Query: 147 TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNL------HFVIVGG-- 198
G + + + E E A K+R + + G + N +FV
Sbjct: 118 VKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSA 177
Query: 199 --GPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQ 256
GP E + LH Y ++ + D V +T+ G++ L+ +
Sbjct: 178 CEGPV-FEMSLMLHGYFKKK------GMLDKVHVTVFSPGEY-LSDLSPNSRKAVASIYN 229
Query: 257 RDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQG 316
+ GI+++ ++ + + EI + +T IP + + PA+K+ +
Sbjct: 230 QLGIKLVHNFKIKEIREHEIVDEKGNT-----IPADITILLPPYTGNPALKNSTPDLVDD 284
Query: 317 KRRVLATNEWLRVKECENVYALGDCATIDQRKV 349
+ + +K +NVYA+GD ++ K+
Sbjct: 285 GGFIPTDLNMVSIK-YDNVYAVGDANSMTVPKL 316
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 212 YIQEDLINLYPTVKDL-VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVV- 269
YI +LIN+ +K L + + G+ IL FDE + + E +++ I ++T VV
Sbjct: 186 YIAVELINV---IKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVE 242
Query: 270 --NVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWL 327
VSDK +++ + H V++ VG P E + K V N ++
Sbjct: 243 IKKVSDKNLSIHLSDGRIYEHFDH--VIYC--VGRSPD----TENLKLEKLNVETNNNYI 294
Query: 328 RVKE-----CENVYALGDCATIDQRKVMEDISTI 356
V E N+YA+GDC + + K +ED++ +
Sbjct: 295 VVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLL 328
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 114/266 (42%), Gaps = 52/266 (19%)
Query: 98 QFWEAEAIKIDAAKNEVFCKSNIDKETRDF------SLEYDYLIIAVGAQVNTFGTPGV- 150
+F++ +AI++ + + +ID+E R ++EY +L++A GA+ P
Sbjct: 65 KFFQDQAIELISDR-----MVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNAS 119
Query: 151 LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELH 210
L + +L+ L++++ +R+ + D H V++G G G+EFAA
Sbjct: 120 LPDVLYLRTLDESEVLRQRMPD-----------------KKHVVVIGAGFIGLEFAATAR 162
Query: 211 -DYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVV 269
++ D++ L P V + R+ + ISS+ + GI + R
Sbjct: 163 AKGLEVDVVELAPRV--MARVVTPE------------ISSYFHDRHSGAGIRMHYGVRAT 208
Query: 270 NVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWL 327
++ + +T + S G ++P LV+ GVG P ++ ++ + L
Sbjct: 209 EIAAEGDRVTGVVLSDG--NTLPCDLVV--VGVGVIPNVEIAAAAGLPTAAGIIVDQQLL 264
Query: 328 RVKECENVYALGDCATIDQRKVMEDI 353
++ A+GDCA + + E +
Sbjct: 265 --TSDPHISAIGDCALFESVRFGETM 288
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 120/288 (41%), Gaps = 42/288 (14%)
Query: 62 YFAFTPL-LPSVTCGTVEARS--IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKS 118
Y +F LP G + R + + V K+ N +I+ +E +KI+ + + K+
Sbjct: 72 YISFANCGLPYYIGGVITERQKLLVQTVERXSKRFNLDIRVL-SEVVKINKEEKTITIKN 130
Query: 119 NIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHF--LKELEDAQKIRRTVTDCFEK 176
ET ++ YD LI++ GA+ PG+ E L+ + D +I+ +
Sbjct: 131 VTTNET--YNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYI------ 182
Query: 177 AVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSG 236
+ K+ H ++GGG GVE L + + +TL++
Sbjct: 183 ---------DEKKPRHATVIGGGFIGVEXVENLRER--------------GIEVTLVEXA 219
Query: 237 DHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLW 296
+ + D +++ + + +E++ E V + + +++KS G+V I ++
Sbjct: 220 NQVXPPIDYEXAAYVHEHXKNHDVELVFEDGVDALEENGAVVRLKS-GSV--IQTDXLIL 276
Query: 297 STGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATI 344
+ GV ++ + G R + NE + + ++YA+GD +
Sbjct: 277 AIGVQPESSLAKGA-GLALGVRGTIKVNEKFQTSD-PHIYAIGDAIEV 322
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 56/259 (21%)
Query: 98 QFWE---------AEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTP 148
QFWE AE + +D A + V K ++EY LI A G
Sbjct: 73 QFWEDKAVEMKLGAEVVSLDPAAHTV-------KLGDGSAIEYGKLIWATGGDPRRLSCV 125
Query: 149 GV-LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAA 207
G L H ++ EDA ++ + + AV ++GGG G+E AA
Sbjct: 126 GADLAGVHAVRTKEDADRLMAELDAGAKNAV----------------VIGGGYIGLEAAA 169
Query: 208 ELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF-DERISSFAEKKFQRDGIEVLTEC 266
L + V +TL+++ +L E +S F + + + G+++ T
Sbjct: 170 VLTKF--------------GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGA 215
Query: 267 RV--VNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATN 324
+ + ++T G+V IP +V+ G+G P + + G V +
Sbjct: 216 AMDCIEGDGTKVTGVRMQDGSV--IPADIVI--VGIGIVPCVGALISAGASGGNGV-DVD 270
Query: 325 EWLRVKECENVYALGDCAT 343
E+ R +VYA+GDCA
Sbjct: 271 EFCRTS-LTDVYAIGDCAA 288
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 39/199 (19%)
Query: 69 LPSVTCGTVEARS--IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP G + RS + + + + N E++ E + ID A V + +D +
Sbjct: 45 LPYHISGEIAQRSALVLQTPESFKARFNVEVRVKH-EVVAIDRAAKLVTVRRLLDGS--E 101
Query: 127 FSLEYDYLIIAVGAQVNTFGTPGVLEN--CHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184
+ YD L+++ GA PGV +N H L+ + D +I +T+
Sbjct: 102 YQESYDTLLLSPGAAPIVPPIPGV-DNPLTHSLRNIPDMDRILQTI-------------- 146
Query: 185 EERKRNL-HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF 243
+ N+ H +VGGG G+E LH ++ TL++ D ++
Sbjct: 147 --QMNNVEHATVVGGGFIGLEMMESLHHL--------------GIKTTLLELADQVMTPV 190
Query: 244 DERISSFAEKKFQRDGIEV 262
D ++ FA + + G+++
Sbjct: 191 DREMAGFAHQAIRDQGVDL 209
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 193 FVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAE 252
++VGGG G+E H E + +++ D IL + D +S AE
Sbjct: 170 LIVVGGGVIGLELGVVWHRLGAE--------------VIVLEYMDRILPTMDLEVSRAAE 215
Query: 253 KKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWS----TGVGTRPAIKD 308
+ F++ G+ + T RV V ++ GA + G VL + VG RP +
Sbjct: 216 RVFKKQGLTIRTGVRVTAVVP-------EAKGARVELEGGEVLEADRVLVAVGRRPYTEG 268
Query: 309 F-MEQIGQG--KRRVLATNEWLRVKECENVYALGDC 341
+E G +R + +E LR + ++YA+GD
Sbjct: 269 LSLENAGLSTDERGRIPVDEHLRTR-VPHIYAIGDV 303
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 51/219 (23%)
Query: 93 RNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLE 152
+N+ + +E+ A+ +D + ++ + + ++IA GA++ + +
Sbjct: 125 QNSNVHIYESRAVFVD--------EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSD 176
Query: 153 NCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDY 212
C E+ D +K+ +++ VIVGGG GVEFA H
Sbjct: 177 LCLTSNEIFDLEKLPKSI-----------------------VIVGGGYIGVEFANIFHGL 213
Query: 213 IQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS 272
V+ TL+ GD IL +FD + GI ++ E V V
Sbjct: 214 --------------GVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQ 259
Query: 273 DKEITMKIKSTGA--VCS----IPHGLVLWSTGVGTRPA 305
E + T +C+ + G V +TG+G A
Sbjct: 260 STENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERA 298
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 228 VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGA 285
V +T+++ L + D +S EK+F++ G+ +LT +V +++D ++T+ + G
Sbjct: 197 VDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGV 256
Query: 286 VCSIPHGLVLWSTGVGTRPAIKDF-MEQIGQG--KRRVLATNEWLRVKECENVYALGDCA 342
+ VL + +G P ++ + +++ G R+ + ++++R ++YA+GD
Sbjct: 257 AQELKAEKVLQA--IGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTN-VGHIYAIGDVN 313
Query: 343 TIDQRKVMEDISTIFAAADKDNSGTLTV 370
+ Q + + + AA + TLT+
Sbjct: 314 GLLQLAHVAEAQGVVAAETIAGAETLTL 341
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 77/191 (40%), Gaps = 36/191 (18%)
Query: 23 EKEREKKRVVLLGTGWAGISFLKDLDVSSYD--VQVVS--PQNYFAFTPLLPSVTCGTVE 78
+E K VV+LG G A +SF+ +L + Y + VV + + PL
Sbjct: 2 SQEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPL-----SKDFM 56
Query: 79 ARSIAEPVRNIIKKRNAEIQ-FWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIA 137
A AE +R + KR E++ A D + V +L Y L++A
Sbjct: 57 AHGDAEKIR-LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDG-------RTLPYGTLVLA 108
Query: 138 VGAQVNTFGT-PGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIV 196
GA T G H L+ LEDA++I+ GL + R +IV
Sbjct: 109 TGAAPRALPTLQGATMPVHTLRTLEDARRIQ------------AGLRPQSR-----LLIV 151
Query: 197 GGGPTGVEFAA 207
GGG G+E AA
Sbjct: 152 GGGVIGLELAA 162
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 78/191 (40%), Gaps = 36/191 (18%)
Query: 23 EKEREKKRVVLLGTGWAGISFLKDLDVSSYD--VQVVS--PQNYFAFTPLLPSVTCGTVE 78
+E K VV+LG G A +SF+ +L + Y + VV + + PL
Sbjct: 2 SQEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPL-----SKDFM 56
Query: 79 ARSIAEPVRNIIKKRNAEIQ-FWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIA 137
A AE +R + KR E++ A D + V D T L Y L++A
Sbjct: 57 AHGDAEKIR-LDCKRAPEVEWLLGVTAQSFDPQAHTVALS---DGRT----LPYGTLVLA 108
Query: 138 VGAQVNTFGT-PGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIV 196
GA T G H L+ LEDA++I+ GL + R +IV
Sbjct: 109 TGAAPRALPTLQGATMPVHTLRTLEDARRIQ------------AGLRPQSR-----LLIV 151
Query: 197 GGGPTGVEFAA 207
GGG G+E AA
Sbjct: 152 GGGVIGLELAA 162
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEK 253
+ VGGG VEFA + Y +D ++TL G+ IL FD + K
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKD-----------GQVTLCYRGEMILRGFDHTLREELTK 240
Query: 254 KFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQI 313
+ +GI++LT+ V K + + + LV+ + +G P KD Q
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA--IGRSPRTKDLQLQ- 297
Query: 314 GQGKRRVLATNEWLRVKE-----CENVYALGDCATIDQRKVMEDISTIFAAADKD 363
V+ N ++V E N+YA+GD + R ++ ++ AAA D
Sbjct: 298 ---NAGVMIKNGGVQVDEYSRTNVSNIYAIGD---VTNRVMLTPVAINEAAALVD 346
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEK 253
+ VGGG VEFA + Y +D ++TL G+ IL FD + K
Sbjct: 191 LTVGGGFISVEFAGIFNAYKPKD-----------GQVTLCYRGEMILRGFDHTLREELTK 239
Query: 254 KFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQI 313
+ +GI++LT+ V K + + + LV+ + +G P KD Q
Sbjct: 240 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA--IGRSPRTKDLQLQ- 296
Query: 314 GQGKRRVLATNEWLRVKE-----CENVYALGDCATIDQRKVMEDISTIFAAADKD 363
V+ N ++V E N+YA+GD + R ++ ++ AAA D
Sbjct: 297 ---NAGVMIKNGGVQVDEYSRTNVSNIYAIGD---VTNRVMLTPVAINEAAALVD 345
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEK 253
+ VGGG VEFA + Y +D ++TL G+ IL FD + K
Sbjct: 193 LTVGGGFISVEFAGIFNAYKPKD-----------GQVTLCYRGEMILRGFDHTLREELTK 241
Query: 254 KFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQI 313
+ +GI++LT+ V K + + + LV+ + +G P KD Q
Sbjct: 242 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA--IGRSPRTKDLQLQ- 298
Query: 314 GQGKRRVLATNEWLRVKE-----CENVYALGDCATIDQRKVMEDISTIFAAADKD 363
V+ N ++V E N+YA+GD + R ++ ++ AAA D
Sbjct: 299 ---NAGVMIKNGGVQVDEYSRTNVSNIYAIGD---VTNRVMLTPVAINEAAALVD 347
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEK 253
+ VGGG VEFA + Y +D ++TL G+ IL FD + K
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKD-----------GQVTLCYRGEMILRGFDHTLREELTK 240
Query: 254 KFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQI 313
+ +GI++LT+ V K + + + LV+ + +G P KD Q
Sbjct: 241 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA--IGRSPRTKDLQLQ- 297
Query: 314 GQGKRRVLATNEWLRVKE-----CENVYALGDCATIDQRKVMEDISTIFAAADKD 363
V+ N ++V E N+YA+GD + R ++ ++ AAA D
Sbjct: 298 ---NAGVMIKNGGVQVDEYSRTNVSNIYAIGD---VTNRVMLTPVAINEAAALVD 346
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 23/154 (14%)
Query: 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFA 251
H ++VG G TG EF ++ Y + V +T++ S DH+L D +
Sbjct: 184 HLIVVGSGVTGAEF------------VDAYTELG--VPVTVVASQDHVLPYEDADAALVL 229
Query: 252 EKKFQRDGIEVLTECRVVNVSDKEITMKIKST-GAVCSIPHGLVLWSTGVGTRPAIKDF- 309
E+ F G+ + R +V+ + + T G H L+ +G+ P
Sbjct: 230 EESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMT----IGSVPNTSGLG 285
Query: 310 MEQIG--QGKRRVLATNEWLRVKECENVYALGDC 341
+E++G G+ L + R +YA GDC
Sbjct: 286 LERVGIQLGRGNYLTVDRVSRTL-ATGIYAAGDC 318
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 74/148 (50%), Gaps = 8/148 (5%)
Query: 228 VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGA 285
V +T+++ L + D +S EK+F++ G+ +LT +V +++D ++T+ + G
Sbjct: 195 VDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGV 254
Query: 286 VCSIPHGLVLWSTGVGTRPAIKDF-MEQIGQG--KRRVLATNEWLRVKECENVYALGDCA 342
+ VL + +G P ++ + +++ G R+ + +++ R ++YA+GD
Sbjct: 255 AQELKAEKVLQA--IGFAPNVEGYGLDKAGVALTDRKAIGVDDYXRTN-VGHIYAIGDVN 311
Query: 343 TIDQRKVMEDISTIFAAADKDNSGTLTV 370
+ Q + + + AA + TLT+
Sbjct: 312 GLLQLAHVAEAQGVVAAETIAGAETLTL 339
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 39/199 (19%)
Query: 69 LPSVTCGTVEARS--IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP G + RS + + + + N E++ E + ID A V + +D +
Sbjct: 45 LPYHISGEIAQRSALVLQTPESFKARFNVEVRVKH-EVVAIDRAAKLVTVRRLLDGS--E 101
Query: 127 FSLEYDYLIIAVGAQVNTFGTPGVLEN--CHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184
+ YD L+++ GA PGV +N H L+ + D +I +T+
Sbjct: 102 YQESYDTLLLSPGAAPIVPPIPGV-DNPLTHSLRNIPDXDRILQTI-------------- 146
Query: 185 EERKRNL-HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF 243
+ N+ H +VGGG G+E LH ++ TL++ D +
Sbjct: 147 --QXNNVEHATVVGGGFIGLEXXESLHHL--------------GIKTTLLELADQVXTPV 190
Query: 244 DERISSFAEKKFQRDGIEV 262
D + FA + + G+++
Sbjct: 191 DREXAGFAHQAIRDQGVDL 209
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 39/199 (19%)
Query: 69 LPSVTCGTVEARS--IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP G + RS + + + + N E++ E + ID A V + +D +
Sbjct: 45 LPYHISGEIAQRSALVLQTPESFKARFNVEVRVKH-EVVAIDRAAKLVTVRRLLDGS--E 101
Query: 127 FSLEYDYLIIAVGAQVNTFGTPGVLEN--CHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184
+ YD L+++ GA PGV +N H L+ + D +I +T+
Sbjct: 102 YQESYDTLLLSPGAAPIVPPIPGV-DNPLTHSLRNIPDXDRILQTI-------------- 146
Query: 185 EERKRNL-HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF 243
+ N+ H +VGGG G+E LH ++ TL++ D +
Sbjct: 147 --QXNNVEHATVVGGGFIGLEXXESLHHL--------------GIKTTLLELADQVXTPV 190
Query: 244 DERISSFAEKKFQRDGIEV 262
D + FA + + G+++
Sbjct: 191 DREXAGFAHQAIRDQGVDL 209
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 139/330 (42%), Gaps = 67/330 (20%)
Query: 29 KRVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPL-LPSVTCG-TVEARSIA 83
K+VV++G G AG+S +K L +DV+V + + P +P V G + + +
Sbjct: 4 KKVVIIGGGAAGMSAASRVKRLK-PEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMY 62
Query: 84 EPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVN 143
P IKKR ++ AE I++D V + N ++ S E+DYL+ A GA
Sbjct: 63 YPPEVFIKKRGIDLHL-NAEVIEVDTGY--VRVRENGGEK----SYEWDYLVFANGASPQ 115
Query: 144 TFGTPGVLENCHFLKEL-EDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTG 202
GV F +L DA IR + + V+
Sbjct: 116 VPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAE---------- 165
Query: 203 VEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-NSFDERISSFAEKKFQRDGIE 261
FAA+ + +T+I G+ +L SFD+ ++ E+K ++
Sbjct: 166 -AFAAQGKN------------------VTMIVRGERVLRRSFDKEVTDILEEKLKKH--- 203
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSI-------PHGLVLWSTGVGTRPAIKDFMEQIG 314
VN+ +EITMKI+ V + LV+ +TG+ +P I + +Q+G
Sbjct: 204 -------VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGI--KPNI-ELAKQLG 253
Query: 315 Q--GKRRVLATNEWLRVKECENVYALGDCA 342
G+ + TNE ++ ENVYA GD A
Sbjct: 254 VRIGETGAIWTNEKMQTS-VENVYAAGDVA 282
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 129/341 (37%), Gaps = 74/341 (21%)
Query: 30 RVVLLGTGWAGISFLKDLDVSSYDVQVV--SPQNYFAFTPLLPSVTCGTVEARSIAEPVR 87
+VV++G G G K L +Y+V V+ P Y++ P+L G + +
Sbjct: 10 KVVIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYS-KPMLSHYIAGFIPRNRLFPYSL 67
Query: 88 NIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGT 147
+ +KR EI+ E EA ID + V T + YD L++A GA+
Sbjct: 68 DWYRKRGIEIRLAE-EAKLIDRGRKVVI--------TEKGEVPYDTLVLATGARAREPQI 118
Query: 148 PGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAA 207
G E L+ + DA +I+ ++ + E ++ G +E A
Sbjct: 119 KGK-EYLLTLRTIFDADRIKESIENSGEAIIIGGGFIG-----------------LELAG 160
Query: 208 ELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECR 267
L + + LI G L DE +S+ + + G++
Sbjct: 161 NLAE--------------AGYHVKLIHRGAMFL-GLDEELSNMIKDMLEETGVKFFLNSE 205
Query: 268 VVNVSDKEITMK---IKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATN 324
++ +++ + I+ +C+I G P + D + G R + +
Sbjct: 206 LLEANEEGVLTNSGFIEGKVKICAI-----------GIVPNV-DLARRSGIHTGRGILID 253
Query: 325 EWLRVKECENVYALGDC------------ATIDQRKVMEDI 353
+ R ++VYA+GDC A ++Q +V+ DI
Sbjct: 254 DNFRT-SAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADI 293
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 93/241 (38%), Gaps = 58/241 (24%)
Query: 118 SNIDKETRDFSLE------YDYLIIAVGAQVNTFGTPGV-LENCHFLKELEDAQKIRRTV 170
+ +D +TR SL+ D ++IA G++ T PG L L+ D Q +R
Sbjct: 81 TALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLR--- 137
Query: 171 TDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDL-VR 229
D + A +IVGGG G E A T + L +
Sbjct: 138 -DSWTSAT-------------RLLIVGGGLIGCEVAT---------------TARKLGLS 168
Query: 230 ITLIQSGDHIL-NSFDERISSFAEKKFQRDGIEVLTECRVVNVS-DKEITMKIKSTGAVC 287
+T++++GD +L RI ++ G++V VV S + ++ + S G
Sbjct: 169 VTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSF 228
Query: 288 SIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKEC-----ENVYALGDCA 342
L+ VG PA Q G LA + + V C + V+A+GD A
Sbjct: 229 VADSALIC----VGAEPA-DQLARQAG------LACDRGVIVDHCGATLAKGVFAVGDVA 277
Query: 343 T 343
+
Sbjct: 278 S 278
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 49/286 (17%)
Query: 69 LPSVTCGTVEAR--SIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP V VE R ++A ++ ++ + E I I+ + V S ++++T +
Sbjct: 44 LPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYH-EVIAINDERQTV---SVLNRKTNE 99
Query: 127 -FSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEE 185
F YD LI++ GA N+ G + L+ LED I D F KA
Sbjct: 100 QFEESYDKLILSPGASANSLGFESDI--TFTLRNLEDTDAI-----DQFIKA-------- 144
Query: 186 ERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245
+ ++VG G +E L++ L+PT LI D I D
Sbjct: 145 --NQVDKVLVVGAGYVSLEVLENLYER------GLHPT--------LIHRSDKINKLMDA 188
Query: 246 RISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305
++ + + I + ++ EIT K +G V + +++ GVGT P
Sbjct: 189 DMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHPN 241
Query: 306 IKDFME--QIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKV 349
K F+E I ++ + N+ N+YA+GD AT R V
Sbjct: 242 SK-FIESSNIKLDRKGFIPVNDKFETN-VPNIYAIGDIATSHYRHV 285
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 49/286 (17%)
Query: 69 LPSVTCGTVEAR--SIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP V VE R ++A ++ ++ + E I I+ + V S ++++T +
Sbjct: 45 LPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYH-EVIAINDERQTV---SVLNRKTNE 100
Query: 127 -FSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEE 185
F YD LI++ GA N+ G + L+ LED I D F KA
Sbjct: 101 QFEESYDKLILSPGASANSLGFESDI--TFTLRNLEDTDAI-----DQFIKA-------- 145
Query: 186 ERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245
+ ++VG G +E L++ L+PT LI D I D
Sbjct: 146 --NQVDKVLVVGAGYVSLEVLENLYER------GLHPT--------LIHRSDKINKLMDA 189
Query: 246 RISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305
++ + + I + ++ EIT K +G V + +++ GVGT P
Sbjct: 190 DMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHPN 242
Query: 306 IKDFME--QIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKV 349
K F+E I ++ + N+ N+YA+GD AT R V
Sbjct: 243 SK-FIESSNIKLDRKGFIPVNDKFETN-VPNIYAIGDIATSHYRHV 286
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 49/286 (17%)
Query: 69 LPSVTCGTVEAR--SIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP V VE R ++A ++ ++ + E I I+ + V S ++++T +
Sbjct: 44 LPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYH-EVIAINDERQTV---SVLNRKTNE 99
Query: 127 -FSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEE 185
F YD LI++ GA N+ G + L+ LED I D F KA
Sbjct: 100 QFEESYDKLILSPGASANSLGFESDI--TFTLRNLEDTDAI-----DQFIKA-------- 144
Query: 186 ERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245
+ ++VG G +E L++ L+PT LI D I D
Sbjct: 145 --NQVDKVLVVGAGYVSLEVLENLYER------GLHPT--------LIHRSDKINKLMDA 188
Query: 246 RISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305
++ + + I + ++ EIT K +G V + +++ GVGT P
Sbjct: 189 DMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHPN 241
Query: 306 IKDFME--QIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKV 349
K F+E I ++ + N+ N+YA+GD AT R V
Sbjct: 242 SK-FIESSNIKLDRKGFIPVNDKFETN-VPNIYAIGDIATSHYRHV 285
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 49/286 (17%)
Query: 69 LPSVTCGTVEAR--SIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP V VE R ++A ++ ++ + E I I+ + V S ++++T +
Sbjct: 44 LPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYH-EVIAINDERQTV---SVLNRKTNE 99
Query: 127 -FSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEE 185
F YD LI++ GA N+ G + L+ LED I D F KA
Sbjct: 100 QFEESYDKLILSPGASANSLGFESDI--TFTLRNLEDTDAI-----DQFIKA-------- 144
Query: 186 ERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245
+ ++VG G +E L++ L+PT LI D I D
Sbjct: 145 --NQVDKVLVVGAGYVSLEVLENLYER------GLHPT--------LIHRSDKINKLMDA 188
Query: 246 RISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305
++ + + I + ++ EIT K +G V + +++ GVGT P
Sbjct: 189 DMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHPN 241
Query: 306 IKDFME--QIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKV 349
K F+E I ++ + N+ N+YA+GD AT R V
Sbjct: 242 SK-FIESSNIKLDRKGFIPVNDKFETN-VPNIYAIGDIATSHYRHV 285
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 49/286 (17%)
Query: 69 LPSVTCGTVEAR--SIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP V VE R ++A ++ ++ + E I I+ + V S ++++T +
Sbjct: 44 LPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYH-EVIAINDERQTV---SVLNRKTNE 99
Query: 127 -FSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEE 185
F YD LI++ GA N+ G + L+ LED I D F KA
Sbjct: 100 QFEESYDKLILSPGASANSLGFESDI--TFTLRNLEDTDAI-----DQFIKA-------- 144
Query: 186 ERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245
+ ++VG G +E L++ L+PT LI D I D
Sbjct: 145 --NQVDKVLVVGAGYVSLEVLENLYER------GLHPT--------LIHRSDKINKLMDA 188
Query: 246 RISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305
++ + + I + ++ EIT K +G V + +++ GVGT P
Sbjct: 189 DMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHPN 241
Query: 306 IKDFME--QIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKV 349
K F+E I ++ + N+ N+YA+GD AT R V
Sbjct: 242 SK-FIESSNIKLDRKGFIPVNDKFETN-VPNIYAIGDIATSHYRHV 285
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 49/286 (17%)
Query: 69 LPSVTCGTVEAR--SIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP V VE R ++A ++ ++ + E I I+ + V S ++++T +
Sbjct: 44 LPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYH-EVIAINDERQTV---SVLNRKTNE 99
Query: 127 -FSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEE 185
F YD LI++ GA N+ G + L+ LED I D F KA
Sbjct: 100 QFEESYDKLILSPGASANSLGFESDI--TFTLRNLEDTDAI-----DQFIKA-------- 144
Query: 186 ERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245
+ ++VG G +E L++ L+PT LI D I D
Sbjct: 145 --NQVDKVLVVGAGYVSLEVLENLYER------GLHPT--------LIHRSDKINKLMDA 188
Query: 246 RISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305
++ + + I + ++ EIT K +G V + +++ GVGT P
Sbjct: 189 DMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHPN 241
Query: 306 IKDFME--QIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKV 349
K F+E I ++ + N+ N+YA+GD AT R V
Sbjct: 242 SK-FIESSNIKLDRKGFIPVNDKFETN-VPNIYAIGDIATSHYRHV 285
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 49/286 (17%)
Query: 69 LPSVTCGTVEAR--SIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
LP V VE R ++A ++ ++ + E I I+ + V S ++++T +
Sbjct: 44 LPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYH-EVIAINDERQTV---SVLNRKTNE 99
Query: 127 -FSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEE 185
F YD LI++ GA N+ G + L+ LED I D F KA
Sbjct: 100 QFEESYDKLILSPGASANSLGFESDI--TFTLRNLEDTDAI-----DQFIKA-------- 144
Query: 186 ERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245
+ ++VG G +E L++ L+PT LI D I D
Sbjct: 145 --NQVDKVLVVGAGYVSLEVLENLYER------GLHPT--------LIHRSDKINKLMDA 188
Query: 246 RISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305
++ + + I + ++ EIT K +G V + +++ GVGT P
Sbjct: 189 DMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHPN 241
Query: 306 IKDFME--QIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKV 349
K F+E I ++ + N+ N+YA+GD AT R V
Sbjct: 242 SK-FIESSNIKLDRKGFIPVNDKFETN-VPNIYAIGDIATSHYRHV 285
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 133/335 (39%), Gaps = 61/335 (18%)
Query: 27 EKKRVVLLGTGWAGISFLKD---LDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEA--RS 81
E+ +V++GTG AG + ++ LD + + + + P+L + +A +
Sbjct: 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+AEP + ++ NA I ID ++ ++E R Y L++A GA+
Sbjct: 63 MAEP-GAMAEQLNARI-LTHTRVTGIDPGHQRIWIG---EEEVR-----YRDLVLAWGAE 112
Query: 142 VNTFGTPGVLENCHF-LKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGP 200
G ++ + + +LED + R+ KR + +++G G
Sbjct: 113 PIRVPVEGDAQDALYPINDLEDYARFRQAAAG---------------KRRV--LLLGAGL 155
Query: 201 TGVEFAAELHDY-IQEDLI----NLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKF 255
G EFA +L Q D++ + P + +Q+G L A K
Sbjct: 156 IGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKK 215
Query: 256 QRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ 315
+G+E ++SD E+ IP LV+ + VG RP + G
Sbjct: 216 AGEGLEA-------HLSDGEV------------IPCDLVV--SAVGLRPR-TELAFAAGL 253
Query: 316 GKRRVLATNEWLRVKECENVYALGDCATIDQRKVM 350
R + + LR N+YALGDCA +D ++
Sbjct: 254 AVNRGIVVDRSLRTSHA-NIYALGDCAEVDGLNLL 287
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 230 ITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVN--VSDKEITMK-IKSTGAV 286
+T++++ D L + DE+++ A+K + G+++L RV V +K++T+K + + G
Sbjct: 206 VTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEK 265
Query: 287 CSIPHGLVLWSTGVGTRPAIKDFMEQ---IGQGKRRVLATNEWLRVKECENVYALGDC 341
L++ VG RP D + + +R + +++ VYA+GD
Sbjct: 266 SQAFDKLIVA---VGRRPVTTDLLAADSGVTLDERGFIYVDDYC-ATSVPGVYAIGDV 319
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 93/246 (37%), Gaps = 64/246 (26%)
Query: 110 AKNEVFCKSNID-KETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRR 168
+KN V + D K L+ D++++A G+ PG+ E+C
Sbjct: 131 SKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGI-EHC-------------- 175
Query: 169 TVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLV 228
E LP E +R L VGGG VEFA + Y
Sbjct: 176 --ISSNEAFYLP----EPPRRVL---TVGGGFISVEFAGIFNAYKPPG-----------G 215
Query: 229 RITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS-----DKEITMKIKST 283
++TL + IL FDE I K+ +GIE++T VS K +T + T
Sbjct: 216 KVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKT 275
Query: 284 -------GAVCSIP--HGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECEN 334
A+ IP + L L + GV P +G +V +E+ R N
Sbjct: 276 LDVDVVMMAIGRIPRTNDLQLGNVGVKLTP----------KGGVQV---DEFSRTN-VPN 321
Query: 335 VYALGD 340
+YA+GD
Sbjct: 322 IYAIGD 327
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 93/246 (37%), Gaps = 64/246 (26%)
Query: 110 AKNEVFCKSNID-KETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRR 168
+KN V + D K L+ D++++A G+ PG+ E+C
Sbjct: 134 SKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGI-EHC-------------- 178
Query: 169 TVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLV 228
E LP E +R L VGGG VEFA + Y
Sbjct: 179 --ISSNEAFYLP----EPPRRVL---TVGGGFISVEFAGIFNAYKPPG-----------G 218
Query: 229 RITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS-----DKEITMKIKST 283
++TL + IL FDE I K+ +GIE++T VS K +T + T
Sbjct: 219 KVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKT 278
Query: 284 -------GAVCSIP--HGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECEN 334
A+ IP + L L + GV P +G +V +E+ R N
Sbjct: 279 LDVDVVMMAIGRIPRTNDLQLGNVGVKLTP----------KGGVQV---DEFSRTN-VPN 324
Query: 335 VYALGD 340
+YA+GD
Sbjct: 325 IYAIGD 330
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 53/152 (34%), Gaps = 43/152 (28%)
Query: 128 SLEYDYLIIAVGAQVNTFGTPG----VLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLS 183
+L+ +Y++IA G+ G PG + N F LEDA K
Sbjct: 170 TLDTEYILIATGSWPTRLGVPGDEFCITSNEAFY--LEDAPK------------------ 209
Query: 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF 243
+ VGGG VEFA + N Y V L GD IL F
Sbjct: 210 --------RMLCVGGGYIAVEFAG---------IFNGYKPCGGYV--DLCYRGDLILRGF 250
Query: 244 DERISSFAEKKFQRDGIEVLTECRVVNVSDKE 275
D + K+ +GI V T ++ E
Sbjct: 251 DTEVRKSLTKQLGANGIRVRTNLNPTKITKNE 282
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 53/152 (34%), Gaps = 43/152 (28%)
Query: 128 SLEYDYLIIAVGAQVNTFGTPG----VLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLS 183
+L+ +Y++IA G+ G PG + N F LEDA K
Sbjct: 170 TLDTEYILIATGSWPTRLGVPGDEFCITSNEAFY--LEDAPK------------------ 209
Query: 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF 243
+ VGGG VEFA + N Y V L GD IL F
Sbjct: 210 --------RMLCVGGGYIAVEFAG---------IFNGYKPCGGYV--DLCYRGDLILRGF 250
Query: 244 DERISSFAEKKFQRDGIEVLTECRVVNVSDKE 275
D + K+ +GI V T ++ E
Sbjct: 251 DTEVRKSLTKQLGANGIRVRTNLNPTKITKNE 282
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 83/230 (36%), Gaps = 56/230 (24%)
Query: 123 ETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGL 182
E ++ E Y+IIA GA+ PGV E C T D F G
Sbjct: 125 EGKEIEAETRYMIIASGAETAKLRLPGV-EYC-------------LTSDDIF------GY 164
Query: 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS 242
RK VI+G G G+E A+ + R+ +Q+ HI+
Sbjct: 165 KTSFRKLPQDMVIIGAGYIGLEIAS-------------------IFRLMGVQT--HIIEM 203
Query: 243 FDERISSFAEKKFQRDGIEVL----------TECRVVNVSDKEITMKIKSTGAVCSIPHG 292
D + + ++ + +L TE + + + E+ K +
Sbjct: 204 LDRALITLEDQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNS 263
Query: 293 LVLWSTGVGTRPAIKDFMEQIGQGKRRV-LATNEWLRVKECENVYALGDC 341
+VL + G RP I + +IG + + +E ++ NV+A GD
Sbjct: 264 VVLAA---GRRPVIPEGAREIGLSISKTGIVVDETMKT-NIPNVFATGDA 309
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 24/162 (14%)
Query: 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF 243
EE+ K+ V+VG G G+E A H E L+ G+ +L F
Sbjct: 182 EEQPKK---VVVVGAGYIGIELAGVFHGLGSE--------------THLVIRGETVLRKF 224
Query: 244 DERISSFAEKKFQRDGIEVLTECRVV----NVSDKEITMKIKSTGAVCSIPHGLVLWSTG 299
DE I + + ++GI V ++V NV ++ + + + ++ + ++W+ G
Sbjct: 225 DECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDE--LIWTIG 282
Query: 300 VGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDC 341
+ + I + +E+ N+Y+LGD
Sbjct: 283 RKSHLGMGSENVGIKLNSHDQIIADEYQNTN-VPNIYSLGDV 323
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 37/247 (14%)
Query: 101 EAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGV-LENCHFLKE 159
E A ID A + V ++ E R +L+YD L++A+G++ N G+ L +
Sbjct: 86 ETRAHAIDRAAHTVEIENLRTGERR--TLKYDKLVLALGSKANRPPVEGMDLAGVTPVTN 143
Query: 160 LEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLIN 219
L++A+ ++ ++ + E K VIVGGG G+E A L D D
Sbjct: 144 LDEAEFVQHAIS-----------AGEVSKA----VIVGGGFIGLEMAVSLADMWGID--- 185
Query: 220 LYPTVKDLVRITLIQSGDHILNSFDER-ISSFAEKKFQRDGIEVLTECRVVNVSDKEITM 278
T+++ D I+ F + +S +++ + V T +VV + + +
Sbjct: 186 ----------TTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKV 235
Query: 279 KIKSTGAVCSIPHGLVLWSTGVGTRPAI-KDFMEQIGQGKRRVLATNEWLRVKECENVYA 337
T ++ LV+ + GV + +D ++ R + + +R + +++A
Sbjct: 236 ARVITDK-RTLDADLVILAAGVSPNTQLARDAGLEL--DPRGAIIVDTRMRTSD-PDIFA 291
Query: 338 LGDCATI 344
GDC TI
Sbjct: 292 GGDCVTI 298
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 51/217 (23%)
Query: 134 LIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHF 193
LI+AVGA T PGV F+ A L + E + +
Sbjct: 178 LILAVGAGPGTLDVPGV------------------NAKGVFDHATL--VEELDYEPGSTV 217
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR---ITLIQSGDHILNSFDERISSF 250
V+VGG T VE+ + + ++ LVR + LI+ D ++
Sbjct: 218 VVVGGSKTAVEYGCFFNATGRRTVM--------LVRTEPLKLIK---------DNETRAY 260
Query: 251 AEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWST-----GVGTRPA 305
+ + G+E+++ V + +++ ++++ V P+G + T G+G +P
Sbjct: 261 VLDRMKEQGMEIISGSNVTRI-EEDANGRVQAV--VAMTPNGEMRIETDFVFLGLGEQPR 317
Query: 306 IKDFMEQIG--QGKRRVLATNEWLRVKECENVYALGD 340
+ + +G G + + NE+L+ NVYA+GD
Sbjct: 318 SAELAKILGLDLGPKGEVLVNEYLQTS-VPNVYAVGD 353
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 24/157 (15%)
Query: 195 IVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKK 254
I+G G G+E A L + E +T++ D +L FD +S+ +
Sbjct: 171 IIGAGYIGIELAGLLRSFGSE--------------VTVVALEDRLLFQFDPLLSATLAEN 216
Query: 255 FQRDGIEVLTECRVVNVS-DKEITMKIKSTGAVCSIPHGL--VLWSTGVGTRPAIKDF-M 310
GIE E V + D + T + G G V+W+ VG P +D +
Sbjct: 217 MHAQGIETHLEFAVAALERDAQGTTLVAQDGTRL---EGFDSVIWA--VGRAPNTRDLGL 271
Query: 311 EQIG-QGKRRVLATNEWLRVKECENVYALGDCATIDQ 346
E G + + + + + VYALGD DQ
Sbjct: 272 EAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITGRDQ 308
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN--YFAFTPLLPSVTCGTVEARSI 82
+++ KRV ++G G+ GI L +V VV+ ++ F F PLL + + A+ I
Sbjct: 163 QQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGI 222
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 174 FEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLI 233
F+ LPG S VIVG G VE A L + +L+
Sbjct: 181 FQLEELPGRS----------VIVGAGYIAVEMAGILSALGS--------------KTSLM 216
Query: 234 QSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AV 286
D +L SFD IS+ ++ + G+EVL +V V S E++M G +
Sbjct: 217 IRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVM 276
Query: 287 CSIPH-GLVLWSTGVGTRPAIKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
IP +LW+ +G P KD + ++G Q + + + + +YA+GD
Sbjct: 277 TMIPDVDCLLWA--IGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 331
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 174 FEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLI 233
F+ LPG S VIVG G VE A L + +L+
Sbjct: 181 FQLEELPGRS----------VIVGAGYIAVEMAGILSALGS--------------KTSLM 216
Query: 234 QSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AV 286
D +L SFD IS+ ++ + G+EVL +V V S E++M G +
Sbjct: 217 IRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVM 276
Query: 287 CSIPH-GLVLWSTGVGTRPAIKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
IP +LW+ +G P KD + ++G Q + + + + +YA+GD
Sbjct: 277 TMIPDVDCLLWA--IGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 331
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 174 FEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLI 233
F+ LPG S VIVG G VE A L + +L+
Sbjct: 181 FQLEELPGRS----------VIVGAGYIAVEMAGILSALGS--------------KTSLM 216
Query: 234 QSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AV 286
D +L SFD IS+ ++ + G+EVL +V V S E++M G +
Sbjct: 217 IRHDKVLRSFDSMISTNXTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVM 276
Query: 287 CSIPH-GLVLWSTGVGTRPAIKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
IP +LW+ +G P KD + ++G Q + + + + +YA+GD
Sbjct: 277 TMIPDVDXLLWA--IGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 331
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 174 FEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLI 233
F+ LPG S VIVG G VE A L + +L+
Sbjct: 182 FQLEELPGRS----------VIVGAGYIAVEMAGILSALGS--------------KTSLM 217
Query: 234 QSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AV 286
D +L SFD IS+ ++ + G+EVL +V V S E++M G +
Sbjct: 218 IRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVM 277
Query: 287 CSIPH-GLVLWSTGVGTRPAIKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
IP +LW+ +G P KD + ++G Q + + + + +YA+GD
Sbjct: 278 TMIPDVDCLLWA--IGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 332
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 174 FEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLI 233
F+ LPG S VIVG G VE A L + +L+
Sbjct: 180 FQLEELPGRS----------VIVGAGYIAVEMAGILSALGS--------------KTSLM 215
Query: 234 QSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AV 286
D +L SFD IS+ ++ + G+EVL +V V S E++M G +
Sbjct: 216 IRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVM 275
Query: 287 CSIPH-GLVLWSTGVGTRPAIKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
IP +LW+ +G P KD + ++G Q + + + + +YA+GD
Sbjct: 276 TMIPDVDCLLWA--IGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 330
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 174 FEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLI 233
F+ LPG S VIVG G VE A L + +L+
Sbjct: 181 FQLEELPGRS----------VIVGAGYIAVEMAGILSALGS--------------KTSLM 216
Query: 234 QSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AV 286
D +L SFD IS+ ++ + G+EVL +V V S E++M G +
Sbjct: 217 IRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVM 276
Query: 287 CSIPH-GLVLWSTGVGTRPAIKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
IP +LW+ +G P KD + ++G Q + + + + +YA+GD
Sbjct: 277 TMIPDVDCLLWA--IGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 331
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 174 FEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLI 233
F+ LPG S VIVG G VE A L + +L+
Sbjct: 166 FQLEELPGRS----------VIVGAGYIAVEMAGILSALGS--------------KTSLM 201
Query: 234 QSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AV 286
D +L SFD IS+ ++ + G+EVL +V V S E++M G +
Sbjct: 202 IRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVM 261
Query: 287 CSIPH-GLVLWSTGVGTRPAIKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
IP +LW+ +G P KD + ++G Q + + + + +YA+GD
Sbjct: 262 TMIPDVDCLLWA--IGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 316
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 174 FEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLI 233
F+ LPG S VIVG G VE A L + +L+
Sbjct: 164 FQLEELPGRS----------VIVGAGYIAVEMAGILSALGS--------------KTSLM 199
Query: 234 QSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AV 286
D +L SFD IS+ ++ + G+EVL +V V S E++M G +
Sbjct: 200 IRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVM 259
Query: 287 CSIPH-GLVLWSTGVGTRPAIKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
IP +LW+ +G P KD + ++G Q + + + + +YA+GD
Sbjct: 260 TMIPDVDCLLWA--IGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 314
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 26/157 (16%)
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEK 253
VIVG G VE A L + +L+ D +L SFD IS+ +
Sbjct: 174 VIVGAGYIAVEMAGILSALGS--------------KTSLMIRHDKVLRSFDSMISTNCTE 219
Query: 254 KFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AVCSIPH-GLVLWSTGVGTRPA 305
+ + G+EVL +V V S E++M G + IP +LW+ +G P
Sbjct: 220 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWA--IGRVPN 277
Query: 306 IKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
KD + ++G Q + + + + +YA+GD
Sbjct: 278 TKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 314
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 85/231 (36%), Gaps = 55/231 (23%)
Query: 131 YDYLIIAVGAQV------------NTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAV 178
YD LI A G+Q + LEN F+K +++ V
Sbjct: 138 YDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSAD------------V 185
Query: 179 LPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH 238
+ L ++ KR +VG G GVE A +E + LI D
Sbjct: 186 IAKLENKDIKR---VAVVGAGYIGVELAEAFQRKGKE--------------VVLIDVVDT 228
Query: 239 ILNSFDER-ISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWS 297
L + +R ++ K + GI++ V V+ KI + + +V+ +
Sbjct: 229 CLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVD--MVILA 286
Query: 298 TGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECE----NVYALGDCATI 344
VG RP +G GK + +L K E VYA+GDCATI
Sbjct: 287 --VGFRPNT-----TLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 124/321 (38%), Gaps = 72/321 (22%)
Query: 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFA-FTPLLPSVTCGTVEARSIAEPVRN 88
++++LG G AG S K D+ +++ + Y + P L + + + +
Sbjct: 11 KILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKN-------KSIDD 63
Query: 89 IIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSL------EYDYLIIAVGAQV 142
I+ K+N ++E IK+ ++ F S ID + +L +Y+ LIIA G+
Sbjct: 64 ILIKKN---DWYEKNNIKVITSE---FATS-IDPNNKLVTLKSGEKIKYEKLIIASGSIA 116
Query: 143 NTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGG-PT 201
N P E L +DA KI+ +C K + L I+ G P
Sbjct: 117 NKIKVPHADE-IFSLYSYDDALKIK---DECKNKGKAFIIGGGILGIELAQAIIDSGTPA 172
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
+ E YP + L D F + K R GI+
Sbjct: 173 SIGIILE------------YPLERQL----------------DRDGGLFLKDKLDRLGIK 204
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+ T N + +E+ I+S+ C I T VG +P + DF++ +R +
Sbjct: 205 IYT-----NSNFEEMGDLIRSS---CVI--------TAVGVKPNL-DFIKDTEIASKRGI 247
Query: 322 ATNEWLRVKECENVYALGDCA 342
N+ + +++YA GD A
Sbjct: 248 LVNDHMET-SIKDIYACGDVA 267
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 85/231 (36%), Gaps = 55/231 (23%)
Query: 131 YDYLIIAVGAQV------------NTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAV 178
YD LI A G+Q + LEN F+K +++ V
Sbjct: 138 YDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSAD------------V 185
Query: 179 LPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH 238
+ L ++ KR +VG G GVE A +E + LI D
Sbjct: 186 IAKLENKDIKR---VAVVGAGYIGVELAEAFQRKGKE--------------VVLIDVVDT 228
Query: 239 ILNSFDER-ISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWS 297
L + +R ++ K + GI++ V V+ KI + + +V+ +
Sbjct: 229 CLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDKNEYDVD--MVILA 286
Query: 298 TGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECE----NVYALGDCATI 344
VG RP +G GK + +L K E VYA+GDCATI
Sbjct: 287 --VGFRPNT-----TLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 26/157 (16%)
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEK 253
VIVG G VE A L + +L+ D +L SFD IS+ +
Sbjct: 191 VIVGAGYIAVEMAGILSALGS--------------KTSLMIRHDKVLRSFDSMISTNCTE 236
Query: 254 KFQRDGIEVLTECRVVNV----SDKEITMKIKSTG---AVCSIPH-GLVLWSTGVGTRPA 305
+ + G+EVL +V V S E++M G + IP +LW+ +G P
Sbjct: 237 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWA--IGRVPN 294
Query: 306 IKDF-MEQIG-QGKRRVLATNEWLRVKECENVYALGD 340
KD + ++G Q + + + + +YA+GD
Sbjct: 295 TKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGD 331
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 21/105 (20%)
Query: 179 LPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH 238
LP L E +I GGG VEFA H V+ TLI G
Sbjct: 166 LPALPES-------ILIAGGGYIAVEFANIFHGL--------------GVKTTLIYRGKE 204
Query: 239 ILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKST 283
IL+ FD+ + GI +L E + +VS ++ +T
Sbjct: 205 ILSRFDQDXRRGLHAAXEEKGIRILCEDIIQSVSADADGRRVATT 249
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 333 ENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLK 392
E Y L C+ D ++ + + F D DNSG+L+VEEF + P+++ +
Sbjct: 4 EASYPLEMCSHFDADEI-KRLGKRFKKLDLDNSGSLSVEEFMSL--------PELQ---Q 51
Query: 393 NKHLNDVTDLLKDPQGNPRREVDIEGFTLALSHVDTQ 429
N + V D+ D GN EVD + F +S +
Sbjct: 52 NPLVQRVIDIF-DTDGNG--EVDFKEFIEGVSQFSVK 85
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 333 ENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLK 392
E Y L C+ D ++ + + F D DNSG+L+VEEF + P+++ +
Sbjct: 3 EASYPLEMCSHFDADEI-KRLGKRFKKLDLDNSGSLSVEEFMSL--------PELQ---Q 50
Query: 393 NKHLNDVTDLLKDPQGNPRREVDIEGFTLALSHVDTQ 429
N + V D+ D GN EVD + F +S +
Sbjct: 51 NPLVQRVIDIF-DTDGNG--EVDFKEFIEGVSQFSVK 84
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 299 GVGTRPAIKDFMEQIGQ---GKRRVLATNEWLRVKECENVYALGDCATIDQRKVMEDIST 355
G+ P +K F++Q GQ GK ++ L +E N L C Q K E+
Sbjct: 53 GLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEE--NFLLLFRCQ---QLKSCEEFMK 107
Query: 356 IFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLNDVTDLL 403
+ D D+SG + EE ++ + D+L + + + + L + TDL+
Sbjct: 108 TWRKYDTDHSGFIETEELKNFLKDLLEKANKT---VDDTKLAEYTDLM 152
>pdb|3R3S|A Chain A, Structure Of The Ygha Oxidoreductase From Salmonella
Enterica
pdb|3R3S|B Chain B, Structure Of The Ygha Oxidoreductase From Salmonella
Enterica
pdb|3R3S|C Chain C, Structure Of The Ygha Oxidoreductase From Salmonella
Enterica
pdb|3R3S|D Chain D, Structure Of The Ygha Oxidoreductase From Salmonella
Enterica
Length = 294
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 155 HFLKELEDAQKIRRTVTDCFEKAV-LPG-LSEEERKRNL 191
+ E EDAQ+++ + +C KAV LPG LS+E R+L
Sbjct: 80 YLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSL 118
>pdb|3HVD|A Chain A, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|B Chain B, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|C Chain C, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|D Chain D, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|E Chain E, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|F Chain F, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|G Chain G, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|H Chain H, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
Length = 548
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 93 RNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA----------QV 142
+N + Q E A I +++ + ++ RD YD IAVGA +V
Sbjct: 373 QNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHREV 432
Query: 143 NTFGTPGVLENCH---------FLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHF 193
T G+L N ++ E+ED + ++ + D ++ + L ++
Sbjct: 433 INSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQD-------- 484
Query: 194 VIVGGGPTGVEFAA---ELHDYIQED--LINLYPTVKDLVRITLIQSGDHILNSFDERIS 248
G T ++F +L YI +N+Y K+ I ++GD N +RI
Sbjct: 485 -----GKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGI-KRIL 538
Query: 249 SFAEKKFQ 256
F++K ++
Sbjct: 539 IFSKKGYE 546
>pdb|1XVJ|A Chain A, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
pdb|1XVJ|B Chain B, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
Length = 109
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 351 EDISTIFAAADKDNSGTLTVEEFQDVI 377
++ T+ AA DKD SG + VEEF ++
Sbjct: 80 KETKTLMAAGDKDGSGKIEVEEFSTLV 106
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 347 RKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVEL 389
R +ED+ F A D+D G +TV+E + + + PQ EL
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEEL 44
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 36/222 (16%)
Query: 131 YDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRN 190
YD LI+A GA F ++ +Q + + F L + E +
Sbjct: 104 YDKLILATGA-------------SQFSTQIRGSQT-EKLLKYKFLSGALAAVPLLENSQT 149
Query: 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-NSFDERISS 249
+ ++G GP G E D++ VK + + +S +++L FD+ +
Sbjct: 150 V--AVIGAGPIGXEAI----DFL----------VKXKKTVHVFESLENLLPKYFDKEXVA 193
Query: 250 FAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDF 309
+K ++ + E V+ + + + ++++ S G+ + P +
Sbjct: 194 EVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDSGIF----ALNLHPQLAYL 249
Query: 310 MEQIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKVME 351
++I + + +A + +L+ NV+A+GDC ++ V E
Sbjct: 250 DKKIQRNLDQTIAVDAYLQTS-VPNVFAIGDCISVXNEPVAE 290
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 377 IDDI--LIRYPQVE-LYLKNKHLNDVTDLLKDPQGNPRREVDIEGFTLALSHVDTQMKSL 433
I DI L+ PQ+E LYL N + D+T L R ++ +L D Q++ +
Sbjct: 122 ISDINGLVHLPQLESLYLGNNKITDITVL--------SRLTKLDTLSLE----DNQIRRI 169
Query: 434 PATAQVAAQQGAYLARN 450
A++ Q YL++N
Sbjct: 170 VPLARLTKLQNLYLSKN 186
>pdb|3TEY|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) Mutant S337c N664c To 2.06-A
Resolution
Length = 715
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 93 RNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA----------QV 142
+N + Q E A I +++ + ++ RD YD IAVGA +V
Sbjct: 540 QNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHREV 599
Query: 143 NTFGTPGVLENCH---------FLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHF 193
T G+L N ++ E+ED + ++ + D ++ + L ++
Sbjct: 600 INSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLCISSLRQD-------- 651
Query: 194 VIVGGGPTGVEFAA---ELHDYIQED--LINLYPTVKDLVRITLIQSGDHILNSFDERIS 248
G T ++F +L YI +N+Y K+ I ++GD N ++I
Sbjct: 652 -----GKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGI-KKIL 705
Query: 249 SFAEKKFQ 256
F++K ++
Sbjct: 706 IFSKKGYE 713
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 29/184 (15%)
Query: 193 FVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAE 252
+++GGG G+E E +TLI+ IL D ++
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAE--------------VTLIEYMPEILPQGDPETAALLR 217
Query: 253 KKFQRDGIEVLTECRVVNVSDKE--ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDF- 309
+ +++GI V T+ + V K+ + ++++ + VG +P +
Sbjct: 218 RALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLG 277
Query: 310 MEQIG-----QGKRRVLATNEWLRVKECENVYALGDCA---TIDQRKVMEDISTIFAAAD 361
+E+ G +G RV A E VYA+GD A + + + E + AA
Sbjct: 278 LEKAGVKVDERGFIRVNARME----TSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAG 333
Query: 362 KDNS 365
KD++
Sbjct: 334 KDSA 337
>pdb|3TEZ|A Chain A, Crystal Structure Of Anthrax Protective Antigen Mutant
S337c N664c And Dithiolacetone Modified To 1.8-A
Resolution
Length = 735
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 93 RNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA----------QV 142
+N + Q E A I +++ + ++ RD YD IAVGA +V
Sbjct: 560 QNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHREV 619
Query: 143 NTFGTPGVLENCH---------FLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHF 193
T G+L N ++ E+ED + ++ + D ++ + L ++
Sbjct: 620 INSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLCISSLRQD-------- 671
Query: 194 VIVGGGPTGVEFAA---ELHDYIQED--LINLYPTVKDLVRITLIQSGDHILNSFDERIS 248
G T ++F +L YI +N+Y K+ I ++GD N ++I
Sbjct: 672 -----GKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGI-KKIL 725
Query: 249 SFAEKKFQ 256
F++K ++
Sbjct: 726 IFSKKGYE 733
>pdb|3KWV|A Chain A, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|B Chain B, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|D Chain D, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|E Chain E, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
Length = 548
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 93 RNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA----------QV 142
+N + Q E A I +++ + ++ RD YD IAVGA +V
Sbjct: 373 QNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHREV 432
Query: 143 NTFGTPGVLENCH---------FLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHF 193
T G+L N ++ E+ED + ++ + D ++ + L ++
Sbjct: 433 INSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQD-------- 484
Query: 194 VIVGGGPTGVEFAA---ELHDYIQED--LINLYPTVKDLVRITLIQSGDHILNSFDERIS 248
G T ++F +L YI +N+Y K+ I ++GD N ++I
Sbjct: 485 -----GKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGI-KKIL 538
Query: 249 SFAEKKFQ 256
F++K ++
Sbjct: 539 IFSKKGYE 546
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,146,913
Number of Sequences: 62578
Number of extensions: 662652
Number of successful extensions: 2159
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 2030
Number of HSP's gapped (non-prelim): 167
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)