BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041537
(547 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1JPL4|NDB1_ARATH NAD(P)H dehydrogenase B1, mitochondrial OS=Arabidopsis thaliana
GN=NDB1 PE=1 SV=1
Length = 571
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/520 (75%), Positives = 453/520 (87%), Gaps = 3/520 (0%)
Query: 31 VVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNII 90
VV+LGTGWAGISFLKDLD++SYDVQVVSPQNYFAFTPLLPSVTCGTVEARSI E VRNI
Sbjct: 52 VVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVESVRNIT 111
Query: 91 KKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKE---TRDFSLEYDYLIIAVGAQVNTFGT 147
KK+N EI+ WEA+ KID +V C+ + +++FSL YDYLI+AVGAQVNTFGT
Sbjct: 112 KKKNGEIELWEADCFKIDHVNQKVHCRPVFKDDPEASQEFSLGYDYLIVAVGAQVNTFGT 171
Query: 148 PGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAA 207
PGVLENCHFLKE+EDAQ+IRR V DCFEKA+LPGL+EE+R+R LHFVIVGGGPTGVEFAA
Sbjct: 172 PGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGGGPTGVEFAA 231
Query: 208 ELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECR 267
ELHD+I ED+ +YP+VK+LV+ITLIQSGDHILN+FDERISSFAE+KF RDGI+V T R
Sbjct: 232 ELHDFIIEDITKIYPSVKELVKITLIQSGDHILNTFDERISSFAEQKFTRDGIDVQTGMR 291
Query: 268 VVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWL 327
V++V+DK+IT+K+KS+G + SIPHGL+LWSTGVGTRP I DFMEQ+GQG RR +ATNEWL
Sbjct: 292 VMSVTDKDITVKVKSSGELVSIPHGLILWSTGVGTRPVISDFMEQVGQGGRRAVATNEWL 351
Query: 328 RVKECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQV 387
+V CENVYA+GDCA+I QRK++ DI+ IF AAD DNSGTLT+EE + V+DDI++RYPQV
Sbjct: 352 QVTGCENVYAVGDCASIAQRKILGDIANIFKAADADNSGTLTMEELEGVVDDIIVRYPQV 411
Query: 388 ELYLKNKHLNDVTDLLKDPQGNPRREVDIEGFTLALSHVDTQMKSLPATAQVAAQQGAYL 447
ELYLK+KH+ + DLL D +GN R+EVDIE F LALS D+QMK+LPATAQVAAQQGAYL
Sbjct: 412 ELYLKSKHMRHINDLLADSEGNARKEVDIEAFKLALSEADSQMKTLPATAQVAAQQGAYL 471
Query: 448 ARNFNRRQQCKEHPEGPRRFRGLGRHHFRPFRYKHFGQFAPLGGEQAAAELPGDWVSMGH 507
A+ FNR +QCKE PEGP+RFR G H FRPF+YKHFGQFAPLGG+QAAAELPGDWVS G
Sbjct: 472 AKCFNRMEQCKELPEGPKRFRTGGHHQFRPFQYKHFGQFAPLGGDQAAAELPGDWVSAGK 531
Query: 508 STQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSSRI 547
S QWLWYSVYASKQVSWRTR LVVSDWTRR+IFGRDSSRI
Sbjct: 532 SAQWLWYSVYASKQVSWRTRALVVSDWTRRYIFGRDSSRI 571
>sp|F4JJJ3|NDB3_ARATH NAD(P)H dehydrogenase B3, mitochondrial OS=Arabidopsis thaliana
GN=NDB3 PE=2 SV=1
Length = 580
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/554 (66%), Positives = 446/554 (80%), Gaps = 11/554 (1%)
Query: 1 GGGLVAYSESQSEPGSPASEHGEKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ 60
GGGL+ YSE+ S ++ E + K++VVLLGTGWAG SFLK L+ SSY+VQV+SP+
Sbjct: 31 GGGLIVYSEANP---SYSNNGVETKTRKRKVVLLGTGWAGASFLKTLNNSSYEVQVISPR 87
Query: 61 NYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNI 120
NYFAFTPLLPSVTCGTVEARS+ EP+RNI +K+N E+ F EAE KID +V+C+S
Sbjct: 88 NYFAFTPLLPSVTCGTVEARSVVEPIRNIARKQNVEMSFLEAECFKIDPGSKKVYCRSKQ 147
Query: 121 ---DKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKA 177
K ++F ++YDYL+IA GAQ NTF PGV ENCHFLKE+EDAQ+IR TV D FEKA
Sbjct: 148 GVNSKGKKEFDVDYDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKA 207
Query: 178 VLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGD 237
LPGL+E+ERKR LHFV+VGGGPTGVEFA+ELHD++ EDL+ LYP K+LV+ITL+++ D
Sbjct: 208 SLPGLNEQERKRMLHFVVVGGGPTGVEFASELHDFVNEDLVKLYPKAKNLVQITLLEAAD 267
Query: 238 HILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWS 297
HIL FD+RI+ FAE+KF RDGI+V VV V+DKEI+ K K+ G V +IP+G+++WS
Sbjct: 268 HILTMFDKRITEFAEEKFTRDGIDVKLGSMVVKVNDKEISAKTKA-GEVSTIPYGMIVWS 326
Query: 298 TGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKVMEDISTIF 357
TG+GTRP IKDFM+QIGQG RR LAT+EWLRV+ C+N+YALGDCATI+QRKVMEDI+ IF
Sbjct: 327 TGIGTRPVIKDFMKQIGQGNRRALATDEWLRVEGCDNIYALGDCATINQRKVMEDIAAIF 386
Query: 358 AAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLNDVTDLLKDPQG----NPRRE 413
ADK+NSGTLT++EF +V+ DI RYPQVELYLK+K ++ +TDLLK Q N E
Sbjct: 387 KKADKENSGTLTMKEFHEVMSDICDRYPQVELYLKSKGMHGITDLLKQAQAENGSNKSVE 446
Query: 414 VDIEGFTLALSHVDTQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPRRFRGLGRH 473
+DIE AL VD+Q+K LPAT QVAAQQG YLA+ F+R + C+++PEGP R RG GRH
Sbjct: 447 LDIEELKSALCQVDSQVKLLPATGQVAAQQGTYLAKCFDRMEVCEKNPEGPIRIRGEGRH 506
Query: 474 HFRPFRYKHFGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSD 533
FRPFRY+H GQFAPLGGEQ AA+LPGDWVS+GHS+QWLWYSVYASKQVSWRTRVLVVSD
Sbjct: 507 RFRPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRVLVVSD 566
Query: 534 WTRRFIFGRDSSRI 547
W RRFIFGRDSSRI
Sbjct: 567 WMRRFIFGRDSSRI 580
>sp|Q94BV7|NDB2_ARATH NAD(P)H dehydrogenase B2, mitochondrial OS=Arabidopsis thaliana
GN=NDB2 PE=1 SV=1
Length = 582
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/554 (65%), Positives = 446/554 (80%), Gaps = 9/554 (1%)
Query: 1 GGGLVAYSESQSEPGSPASEHGEKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ 60
GGGL+AYSE+ + G+ E +KK+VVLLGTGWAG SFLK+L+ S Y+VQ++SP+
Sbjct: 31 GGGLIAYSEANASYGANGGAVVETGTKKKKVVLLGTGWAGTSFLKNLNNSQYEVQIISPR 90
Query: 61 NYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNI 120
NYFAFTPLLPSVTCGTVEARS+ EP+RNI +K N + + EAE KID A +V+C+S
Sbjct: 91 NYFAFTPLLPSVTCGTVEARSVVEPIRNIGRK-NVDTSYLEAECFKIDPASKKVYCRSKQ 149
Query: 121 DKET---RDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKA 177
+ ++FS++YDYL+IA GAQ NTF PGV ENCHFLKE+EDAQ+IR+TV D FEKA
Sbjct: 150 GLSSNGKKEFSVDYDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRKTVIDSFEKA 209
Query: 178 VLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGD 237
LP LS+EERKR LHFV+VGGGPTGVEFAAELHD++ EDL++LYP K VRITL+++ D
Sbjct: 210 SLPELSDEERKRILHFVVVGGGPTGVEFAAELHDFVTEDLVSLYPRAKGSVRITLLEAAD 269
Query: 238 HILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWS 297
HIL FD+RI+ FAE+KF RDGI+V V V++K+I+ K K G V SIP+G+++WS
Sbjct: 270 HILTMFDKRITEFAEEKFSRDGIDVKLGSMVTKVNEKDISAKTKG-GEVSSIPYGMIVWS 328
Query: 298 TGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKVMEDISTIF 357
TG+GTRP IKDFM+QIGQG RR LAT+EWLRV+ +N+YALGDCATI+QRKVMED+S IF
Sbjct: 329 TGIGTRPVIKDFMKQIGQGNRRALATDEWLRVEGTDNIYALGDCATINQRKVMEDVSAIF 388
Query: 358 AAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLNDVTDLLKDPQGNP----RRE 413
+ ADKD SGTLT++EFQ+ +DDI +RYPQVELYLK+K + + DLLK+ + + E
Sbjct: 389 SKADKDKSGTLTLKEFQEAMDDICVRYPQVELYLKSKRMRGIADLLKEAETDDVSKNNIE 448
Query: 414 VDIEGFTLALSHVDTQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPRRFRGLGRH 473
+ IE F ALS VD+Q+K LPATAQVAAQQGAYLA+ F+R ++C++ PEGP R RG GRH
Sbjct: 449 LKIEEFKSALSQVDSQVKFLPATAQVAAQQGAYLAKCFDRMEECEKSPEGPIRMRGEGRH 508
Query: 474 HFRPFRYKHFGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSD 533
FRPFRY+H GQFAPLGGEQ AA+LPGDWVS+GHS+QWLWYSVYASKQVSWRTRVLVVSD
Sbjct: 509 RFRPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRVLVVSD 568
Query: 534 WTRRFIFGRDSSRI 547
W RRFIFGRDSS I
Sbjct: 569 WMRRFIFGRDSSSI 582
>sp|Q9SKT7|NDB4_ARATH NAD(P)H dehydrogenase B4, mitochondrial OS=Arabidopsis thaliana
GN=NDB4 PE=1 SV=1
Length = 582
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/555 (60%), Positives = 433/555 (78%), Gaps = 12/555 (2%)
Query: 1 GGGLVAYSESQS-----EPGSPASEHGEKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQ 55
GGG++ YS+S + G R KK+VV+LG+GW+G SFL L+ +YDVQ
Sbjct: 32 GGGVLVYSDSNPLKRILHADATLDSDGNPIR-KKKVVVLGSGWSGYSFLSYLNNPNYDVQ 90
Query: 56 VVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVF 115
VVSP+N+F FTPLLPSVT GTVEARSI EP+R +++K+ E + EAE +KIDA+ ++
Sbjct: 91 VVSPRNFFLFTPLLPSVTNGTVEARSIVEPIRGLMRKKGFEYK--EAECVKIDASNKKIH 148
Query: 116 CKSNID---KETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTD 172
C+S K T +F ++YD LI+AVGA+ NTF TPGV E+ +FLKE EDA IR +V D
Sbjct: 149 CRSKEGSSLKGTTEFDMDYDILILAVGAKPNTFNTPGVEEHAYFLKEAEDALNIRHSVID 208
Query: 173 CFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITL 232
CFE+A LP L+EEERK+ LHFV+VGGGPTGVEF+AELHD++ +D+ +YP V++ +ITL
Sbjct: 209 CFERASLPNLTEEERKKILHFVVVGGGPTGVEFSAELHDFLVQDVAKIYPKVQEFTKITL 268
Query: 233 IQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHG 292
+++GDHILN FD+RI++FAE+KFQRDGI++ T VV V+ EI+ K + TG + S P+G
Sbjct: 269 LEAGDHILNMFDKRITAFAEEKFQRDGIDLKTGSMVVGVTADEISTKERETGKIVSEPYG 328
Query: 293 LVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKVMED 352
+V+WSTG+G+RP IKDFM+QIGQG+RRVLAT+EWLRV+ C+ VYALGD ATI+QR+VMED
Sbjct: 329 MVVWSTGIGSRPVIKDFMQQIGQGQRRVLATDEWLRVEGCDGVYALGDTATINQRRVMED 388
Query: 353 ISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLNDVTDLLKDPQGNPRR 412
I+ IF ADK N+GTL ++F V+ DI RYPQVELYLK L ++ +LLK G
Sbjct: 389 IAAIFNKADKGNTGTLKKKDFNSVVKDICQRYPQVELYLKKNKLKNIANLLKSANGED-T 447
Query: 413 EVDIEGFTLALSHVDTQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPRRFRGLGR 472
+V+IE F ALS VD+QMK+LPATAQVA+QQG YLA+ FN+ ++C++ PEGP RFRG GR
Sbjct: 448 QVNIEKFKQALSEVDSQMKNLPATAQVASQQGKYLAKCFNKMEKCEKKPEGPLRFRGEGR 507
Query: 473 HHFRPFRYKHFGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVS 532
H F+PFRY+HFG FAPLGGEQ AAELPGDWVS+GHS+QWLWYSVYASK VSWRTR+LV+S
Sbjct: 508 HRFQPFRYRHFGSFAPLGGEQTAAELPGDWVSIGHSSQWLWYSVYASKLVSWRTRMLVIS 567
Query: 533 DWTRRFIFGRDSSRI 547
DWTRRF+FGRDSS I
Sbjct: 568 DWTRRFVFGRDSSSI 582
>sp|F2Z699|NDH2_YARLI External alternative NADH-ubiquinone oxidoreductase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2
PE=1 SV=1
Length = 582
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 148/323 (45%), Positives = 213/323 (65%), Gaps = 9/323 (2%)
Query: 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVR 87
KK +V+LG+GW +SFLK LD S+Y+V VVSP+NYF FTPLLPS GT+E RSI EP+R
Sbjct: 112 KKTLVVLGSGWGSVSFLKKLDTSNYNVIVVSPRNYFLFTPLLPSCPTGTIEHRSIMEPIR 171
Query: 88 NIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLE---YDYLIIAVGAQVNT 144
II+ + AE Q+ EA+A KID K V +S + + +++ ++ +DYL++ VGA +T
Sbjct: 172 GIIRHKQAECQYLEADATKIDHEKRIVTIRSAVSENSKEEVIKEIPFDYLVVGVGAMSST 231
Query: 145 FGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVE 204
FG PGV EN FLKE+ DAQ+IRRT+ DC EKA E RKR LH V+VGGGPTGVE
Sbjct: 232 FGIPGVQENACFLKEIPDAQQIRRTLMDCIEKAQFEK-DPEVRKRLLHTVVVGGGPTGVE 290
Query: 205 FAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLT 264
FAAEL D+ ++DL P ++D ++TL+++ ++L SF +++ + EK F + I +LT
Sbjct: 291 FAAELQDFFEDDLRKWIPDIRDDFKVTLVEALPNVLPSFSKKLIDYTEKTFSDEKISILT 350
Query: 265 ECRVVNVSDKEI---TMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIG--QGKRR 319
+ V +V + I K T +P+G ++W+TG RP +++ M +I +G RR
Sbjct: 351 KTMVKSVDENVIRAEQTKGDGTKETLEMPYGTLVWATGNTVRPVVRELMSKIPAQKGSRR 410
Query: 320 VLATNEWLRVKECENVYALGDCA 342
L NE+L V+ E ++ALGDC+
Sbjct: 411 GLLVNEYLVVEGTEGIWALGDCS 433
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 31/151 (20%)
Query: 427 DTQMKSLPATAQVAAQQGAYLA------------------------RNFNRRQQCKEHPE 462
D TAQVA+Q+G+YLA F+ +++ +
Sbjct: 431 DCSATKYAPTAQVASQEGSYLANLLNGIAKTEDLNNEITNLEKQSEHTFDEQERKNIFAQ 490
Query: 463 GPRRFRGLGRHH-FRPFRYKHFGQFAPLGGEQAAAELP------GDWVSMGHSTQWLWYS 515
+ R L R PF Y H G A +G ++A A+L +W S G T + W S
Sbjct: 491 LESKSRKLRRSRAMLPFEYSHQGSLAYIGSDRAVADLSFNFWGIMNWSSGGTMTYYFWRS 550
Query: 516 VYASKQVSWRTRVLVVSDWTRRFIFGRDSSR 546
Y S S R ++LV DW + +FGRD SR
Sbjct: 551 AYVSMCFSMRNKILVCIDWMKVRVFGRDISR 581
>sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum
GN=DDB_G0270104 PE=3 SV=2
Length = 451
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 200/322 (62%), Gaps = 11/322 (3%)
Query: 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPV 86
E +++++LG GW SFLK+L+ YD+ V+SP+N+F FTPLL S GT+E RSIAEPV
Sbjct: 38 ENEKLIILGCGWGSYSFLKNLNSIKYDITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPV 97
Query: 87 RNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146
R + E ++ +A I+ N V KS E + F ++YD L+I VG++ NTFG
Sbjct: 98 RT--TRDINEFKYIQASVTSINPENNSVLVKSTFHNE-KPFEMKYDKLVIGVGSRNNTFG 154
Query: 147 TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFA 206
GV EN +FLKEL A++IR+ + +CFE+A LP +S EER+R L FVIVGGG TG+EF
Sbjct: 155 IKGVEENANFLKELHHAREIRQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFT 214
Query: 207 AELHDYIQEDLINLYPTVK-DLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTE 265
+EL+D+ EDL L+P V + V+I L+++ IL++FD+++ A F+ GI+V T
Sbjct: 215 SELNDFFSEDLSRLFPFVPVNEVKIILLEASGKILSTFDQKLVKKALINFRNSGIDVRTH 274
Query: 266 CRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNE 325
V KE+ IP+GL++WSTG+G P +K+ + R + ++
Sbjct: 275 SSV-----KEVLKDYVILDNGDRIPYGLLVWSTGIGQHPLVKNSSFEKDSHDR--IIVDD 327
Query: 326 WLRVKECENVYALGDCATIDQR 347
LRVK NV++ GDCA ++ +
Sbjct: 328 HLRVKNYSNVFSFGDCANVENK 349
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 427 DTQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPRRFRGLGRHHFRPFRYKHFGQF 486
+ + K+ P TAQVA+Q YLA+ FN ++ +P +PF +K G
Sbjct: 345 NVENKNYPPTAQVASQSAVYLAKEFNNLEKLNPNPP-------------KPFAFKFLGLL 391
Query: 487 APLGGEQAAAELPGDWVSMGHSTQWL-WYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSS 545
A G + + L D+ + ++ W S Y ++ S R+++ V DW R IFGRD S
Sbjct: 392 AYTG--KKSGILQTDFFDLSGFIGFITWRSAYLTRLGSLRSKIQVPFDWMRTLIFGRDIS 449
>sp|P40215|NDH1_YEAST External NADH-ubiquinone oxidoreductase 1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NDE1 PE=1 SV=1
Length = 560
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 210/346 (60%), Gaps = 6/346 (1%)
Query: 1 GGGLVAYS---ESQSEPGSPASEHGEKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVV 57
G V+YS E+ P S+ ++K +V+LG+GW +S LK+LD + Y+V VV
Sbjct: 82 GTAYVSYSLYREANPSTQVPQSDTFPNGSKRKTLVILGSGWGSVSLLKNLDTTLYNVVVV 141
Query: 58 SPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCK 117
SP+NYF FTPLLPS GT+E +SI EPVR I ++ + E+ ++EAEA +D + K
Sbjct: 142 SPRNYFLFTPLLPSTPVGTIELKSIVEPVRTIARRSHGEVHYYEAEAYDVDPENKTIKVK 201
Query: 118 SNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKA 177
S+ D L+YDYL++ VGAQ NTFGTPGV E FLKE+ DAQ+IR + EKA
Sbjct: 202 SSAKNNDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKA 261
Query: 178 VLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGD 237
+ ER R L FV+VGGGPTGVEFAAEL DY+ +DL P + +++TL+++
Sbjct: 262 ASLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYVDQDLRKWMPELSKEIKVTLVEALP 321
Query: 238 HILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWS 297
+ILN FD+ + +A+ F+ + I++ + V V IT K G + +IP+G+++W+
Sbjct: 322 NILNMFDKYLVDYAQDLFKEEKIDLRLKTMVKKVDATTITAKT-GDGDIENIPYGVLVWA 380
Query: 298 TGVGTRPAIKDFMEQIGQ--GKRRVLATNEWLRVKECENVYALGDC 341
TG R K+ M ++ + +R +L N+ + +++A+GDC
Sbjct: 381 TGNAPREVSKNLMTKLEEQDSRRGLLIDNKLQLLGAKGSIFAIGDC 426
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 436 TAQVAAQQGAYLARNFNRRQQ----------CKEHPEGPRRFRGL--GRHHFRPFRYKHF 483
TAQVA Q+G YLA+ F + + K+ E R + + F+Y H
Sbjct: 435 TAQVAHQEGEYLAQYFKKAYKIDQLNWKMTHAKDDSEVARLKNQIVKTQSQIEDFKYNHK 494
Query: 484 GQFAPLGGEQAAAELP---GDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIF 540
G A +G ++A A+L + G T W S Y + +S+R RVLV DW + +
Sbjct: 495 GALAYIGSDKAIADLAVGEAKYRLAGSFTFLFWKSAYLAMCLSFRNRVLVAMDWAKVYFL 554
Query: 541 GRDSS 545
GRDSS
Sbjct: 555 GRDSS 559
>sp|O14121|NDH1_SCHPO Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC3A11.07 PE=3 SV=1
Length = 551
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 169/547 (30%), Positives = 255/547 (46%), Gaps = 113/547 (20%)
Query: 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVR 87
KK +V+LG GW S L+ +D S ++V VVSP+NYF FT LLPS G+V RSI +P+R
Sbjct: 91 KKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIR 150
Query: 88 NIIKKRNAEIQFWEAEAIKIDAAKNEVFCK-SNIDKETRDFSLEYDYLIIAVGAQVNTFG 146
+++ ++ ++F+EAE +DA K + K + D + ++YDYL+ + GA+ TF
Sbjct: 151 YMLRHKSCYVKFYEAECTDVDADKKVIHIKKTTTDGVDLEQEIKYDYLVCSHGAETQTFN 210
Query: 147 TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFA 206
PG+ E FLKE+ DAQKIR + C E+A L E R+R +H V+VGGGPTG+EFA
Sbjct: 211 IPGIAEYGCFLKEIWDAQKIRARILHCLEQAQFKDLPAETRRRYVHTVVVGGGPTGMEFA 270
Query: 207 AELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTEC 266
E+ D+I++DL + YP + D +TL+++ +L F ++ + + F I++ T
Sbjct: 271 GEMADFIEDDLKSWYPELADDFAVTLVEALPSVLPMFSAKLRDYTQSLFDSSHIKIRTNT 330
Query: 267 RVVNVSDKEITMKIKSTGAVCS---IPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLAT 323
+ V+ + I +++K+ IP+GL+
Sbjct: 331 ALKKVTAENIHVEVKNPDGSKQEEVIPYGLL----------------------------- 361
Query: 324 NEWLRVKECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIR 383
V+A G+ A +K+ME + +++N L V+E
Sbjct: 362 -----------VWAGGNRARPLTKKLME------GSEEQNNRRGLVVDE----------- 393
Query: 384 YPQVELYLKNKHLNDVTDLLKDPQGNPRREVDIEGFTLALSHVDTQMKSLPATAQVAAQQ 443
YLK K D+ F L D + TAQVA+QQ
Sbjct: 394 ------YLKLKGYKDI-------------------FALG----DCTHTAYAPTAQVASQQ 424
Query: 444 GAYLARNFNRRQQCKEHPEGPRRFRGLG--------------RHH----FRPFRYKHFGQ 485
GAYL + FN+ R LG +H F PF+Y H G
Sbjct: 425 GAYLGQLFNKLGSLNFEKPSEDRHIALGDEMDSSTLISLANEKHASTKVFLPFKYSHQGS 484
Query: 486 FAPLGGEQAAAELPGDWV-----SMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIF 540
A +G E+A A++ W + G + W SVY S+ S R R V DW R +F
Sbjct: 485 LAYVGHEKAIADIEVPWFGKQLHASGALAFYFWRSVYLSELYSLRNRTNVTLDWIRVKLF 544
Query: 541 GRDSSRI 547
GRD S +
Sbjct: 545 GRDISSL 551
>sp|Q07500|NDH2_YEAST External NADH-ubiquinone oxidoreductase 2, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NDE2 PE=1 SV=1
Length = 545
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/338 (42%), Positives = 201/338 (59%), Gaps = 3/338 (0%)
Query: 7 YSESQSEPGSPASEHGEKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66
Y ES P S +KK +V+LGTGW IS LK LD S Y+V VVSP+++F FT
Sbjct: 76 YKESNPPKQVPQSTAFANGLKKKELVILGTGWGAISLLKKLDTSLYNVTVVSPRSFFLFT 135
Query: 67 PLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRD 126
PLLPS GT+E +SI EPVR+I ++ E+ + EAEA+ +D +V +S + E
Sbjct: 136 PLLPSTPVGTIEMKSIVEPVRSIARRTPGEVHYIEAEALDVDPKAKKVMVQSVSEDEYFV 195
Query: 127 FSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEE 186
SL YDYL+++VGA+ TF PGV N +FLKE+EDAQ IR + E+A +++ E
Sbjct: 196 SSLSYDYLVVSVGAKTTTFNIPGVYGNANFLKEIEDAQNIRMKLMKTIEQASSFPVNDPE 255
Query: 187 RKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDER 246
RKR L FV+VGGGPTGVEFAAEL DYI +DL P + +++ LI++ +ILN FD+
Sbjct: 256 RKRLLTFVVVGGGPTGVEFAAELQDYINQDLRKWMPDLSKEMKVILIEALPNILNMFDKT 315
Query: 247 ISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAI 306
+ +AE F RD I++ V V + +++ I +G+++W+TG
Sbjct: 316 LIKYAEDLFARDEIDLQVNT-AVKVVEPTYIRTLQNGQTNTDIEYGMLVWATGNEPIDFS 374
Query: 307 KDFMEQIG-QGKRRVLATNEWLRVKECEN-VYALGDCA 342
K M +I Q RR L N+ L + EN +YA+GDC
Sbjct: 375 KTLMSRIPEQTNRRGLLINDKLELLGSENSIYAIGDCT 412
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 25/130 (19%)
Query: 436 TAQVAAQQGAYLARNFNRRQQCKE----------HPEGPRRFR--GLGRHHFRPFRYKHF 483
TAQVA Q+G YLA+ +++ Q ++ E R + L + F YKH
Sbjct: 420 TAQVAHQEGEYLAKILDKKLQIEQLEWDMLNSTDETEVSRLQKEVNLRKSKLDKFNYKHM 479
Query: 484 GQFAPLGGEQAAAELPGDWVSMGHSTQWL--------WYSVYASKQVSWRTRVLVVSDWT 535
G A +G E A A+L MG S+ L W S Y + +S R R+L+ DWT
Sbjct: 480 GALAYIGSETAIADL-----HMGDSSYQLKGMFAFLFWKSAYLAMCLSIRNRILIAMDWT 534
Query: 536 RRFIFGRDSS 545
+ + GRDSS
Sbjct: 535 KVYFLGRDSS 544
>sp|P32340|NDI1_YEAST Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NDI1 PE=1 SV=1
Length = 513
Score = 232 bits (591), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 201/334 (60%), Gaps = 18/334 (5%)
Query: 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPV 86
+K V++LG+GW ISFLK +D Y+V ++SP++YF FTPLLPS GTV+ +SI EP+
Sbjct: 52 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI 111
Query: 87 RNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNID-------------KETRDFSLEYDY 133
N K+ + ++EAEA I+ +N V KS + ++YDY
Sbjct: 112 VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDY 171
Query: 134 LIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHF 193
LI AVGA+ NTFG PGV + HFLKE+ ++ +IRRT EKA L + ER+R L
Sbjct: 172 LISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSI 231
Query: 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEK 253
V+VGGGPTGVE A EL DY+ +DL P + + V+I L+++ +LN F++++SS+A+
Sbjct: 232 VVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQS 291
Query: 254 KFQRDGIEVLTECRVVNVSDKEITMKIK-STGAVC--SIPHGLVLWSTGVGTRPAIKDFM 310
+ I+V V V +K++ K K G + +IP+G ++W+TG RP I D
Sbjct: 292 HLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLF 351
Query: 311 EQIGQ--GKRRVLATNEWLRVKECENVYALGDCA 342
++I + +R LA N++L+VK N++A+GD A
Sbjct: 352 KKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNA 385
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 393 NKHLNDVTDLLKD-PQGNPRRE-------VDIEGFTLALSHVDTQMKSLPATAQVAAQQG 444
NK +TDL K P+ N + + ++G + D LP TAQVA Q+
Sbjct: 341 NKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEA 400
Query: 445 AYLARNFNRRQQCKEHPEGPRRFRG-----LGRHHFRPFRYKHFGQFAPLGGEQAAAELP 499
YLA+NF++ Q + + ++F+PF+Y G A LG E+A A +
Sbjct: 401 EYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIR 460
Query: 500 GD----WVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRD 543
+ G T +LW +Y S +S R+R+ V DW + F RD
Sbjct: 461 SGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 508
>sp|O43090|NDH2_SCHPO Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC947.15c PE=3 SV=1
Length = 551
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 197/332 (59%), Gaps = 7/332 (2%)
Query: 18 ASEHGEKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTV 77
+S G+ KK +V+LG+GW ++ +K+LD S Y++ +VSP+++F FTP+LPS T GT+
Sbjct: 80 SSPKGKSGVPKKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTL 139
Query: 78 EARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNID-KETRDFSLEYDYLII 136
SI EP+ + K + +AE ID + +V + + E ++ + YD L+
Sbjct: 140 RLPSITEPIVALFKGKIDPSNIHQAECTAIDTSAKKVTIRGTTEANEGKEAVIPYDTLVF 199
Query: 137 AVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVL-PGLSEEERKRNLHFVI 195
A+GA TFG GV ++ FLKE DA+K+ + + E+ LS EER R LH +
Sbjct: 200 AIGAGNQTFGIQGVRDHGCFLKEAGDAKKVFNRIFEILEQVRFNKDLSPEERARLLHITV 259
Query: 196 VGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKF 255
VGGGPTG+EFAAE+ D+I D+ +++P ++ + +TLI++ +L F + + ++ E F
Sbjct: 260 VGGGPTGMEFAAEMQDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMFTKSLITYTENLF 319
Query: 256 QRDGIEVLTECRVVNVSDKE-ITMKIKSTG--AVCSIPHGLVLWSTGVGTRPAIKDFMEQ 312
+ I+++T+ V +V++K I K G A+ IP+G+++W+ G+ RP + M
Sbjct: 320 KNLNIKIMTKTVVKDVNEKNLIVQKTNPDGSKAMQEIPYGMLVWAAGITARPLTRTLMSS 379
Query: 313 IGQ--GKRRVLATNEWLRVKECENVYALGDCA 342
I + G R+ L +E+ RVK +YA+GDCA
Sbjct: 380 IPEQSGARKGLIVDEFFRVKGVPEMYAVGDCA 411
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 28/146 (19%)
Query: 427 DTQMKSLPATAQVAAQQGAYLARNFN---------RRQQCKE----HPEGPRRFRGLGRH 473
D LPATAQVA QQGA+LA+N N R Q E E P + GL +
Sbjct: 409 DCAFSGLPATAQVANQQGAWLAKNLNVEGKKFALHERIQALEKQLGEKEAPSQVAGLKQQ 468
Query: 474 ----HFRPFRYKHFGQFAPLGGEQAAAELPGDWVS--------MGHSTQWLWYSVYASKQ 521
PF+Y H G A +G E+A A+L ++ +GH+ W Y ++
Sbjct: 469 VEQLKLEPFKYHHQGALAYVGDEKAIADLKLPFMKKMLPLQGIVGHT---FWRLAYLNEL 525
Query: 522 VSWRTRVLVVSDWTRRFIFGRDSSRI 547
+S R++ +V+ DW + +FGR +++
Sbjct: 526 ISARSQFMVLIDWLKTRLFGRYDAKV 551
>sp|O80874|NDA2_ARATH Alternative NAD(P)H dehydrogenase 2, mitochondrial OS=Arabidopsis
thaliana GN=NDA2 PE=1 SV=1
Length = 508
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 199/327 (60%), Gaps = 19/327 (5%)
Query: 24 KEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIA 83
+E EK RVV+LG+GWAG +K +D + YDV VSP+N+ FTPLL S GT+E RS+A
Sbjct: 67 REGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA 126
Query: 84 EPVRNI--IKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDK----ETRDFSLEYDYLIIA 137
EP+ I R F+ A ++DA +EV C++ D + F + YD L+IA
Sbjct: 127 EPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTLKPWKFKIAYDKLVIA 186
Query: 138 VGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVG 197
GA+ +TFG GV+EN FL+E+ AQ+IRR + + PG+S+EE++R LH V+VG
Sbjct: 187 SGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEKRRLLHCVVVG 246
Query: 198 GGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQR 257
GGPTGVEF+ EL D+I +D+ Y VKD + +TLI++ D IL+SFD+R+ +A K+ +
Sbjct: 247 GGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARD-ILSSFDDRLRRYAIKQLNK 305
Query: 258 DGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGK 317
G+ + V D + I G +P+GL++WSTGVG P F+ +G K
Sbjct: 306 SGVRFVRGI----VKDVQSQKLILDDGT--EVPYGLLVWSTGVGPSP----FVRSLGLPK 355
Query: 318 RRV--LATNEWLRVKECENVYALGDCA 342
+ +EW+RV ++V+A+GDC+
Sbjct: 356 DPTGRIGIDEWMRVPSVQDVFAIGDCS 382
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 428 TQMKSLPATAQVAAQQGAYLARNFN--------RRQQCKEHPEGPRRFRGLGRHHFRPFR 479
T +LPA AQVA ++G YLA N R KE G PF
Sbjct: 388 TGKPTLPALAQVAEREGKYLANLLNAIGKGNGGRANSAKEIELGV------------PFV 435
Query: 480 YKHFGQFAPLGGEQAAAEL----PGDWVSMGHSTQW-LWYSVYASKQVSWRTRVLVVSDW 534
YKH G A +G +A +L +SM W +W S Y ++ +SWR R V +W
Sbjct: 436 YKHLGSMATIGRYKALVDLRESKDAKGISMTGFVSWFIWRSAYLTRVISWRNRFYVAINW 495
Query: 535 TRRFIFGRDSSRI 547
F+FGRD SRI
Sbjct: 496 FTTFVFGRDISRI 508
>sp|Q8GWA1|NDA1_ARATH Alternative NAD(P)H dehydrogenase 1, mitochondrial OS=Arabidopsis
thaliana GN=NDA1 PE=2 SV=1
Length = 510
Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 200/325 (61%), Gaps = 15/325 (4%)
Query: 24 KEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIA 83
KE EK RV++LG+GWAG LK +D S YDV VSP+N+ FTPLL S GT+E RS+A
Sbjct: 69 KEGEKPRVLVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA 128
Query: 84 EPVRNI--IKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETR----DFSLEYDYLIIA 137
EP+ I R ++ A K+DA +EV C++ + + F + YD L++A
Sbjct: 129 EPISRIQPAISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIAYDKLVLA 188
Query: 138 VGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVG 197
GA+ +TFG GVLEN FL+E+ AQ+IRR + + +PG+ E+E+KR LH V+VG
Sbjct: 189 CGAEASTFGINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGIGEDEKKRLLHCVVVG 248
Query: 198 GGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQR 257
GGPTGVEF+ EL D+I +D+ Y VKD +R+TLI++ D IL+SFD+R+ +A K+ +
Sbjct: 249 GGPTGVEFSGELSDFIMKDVRQRYSHVKDDIRVTLIEARD-ILSSFDDRLRHYAIKQLNK 307
Query: 258 DGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGK 317
G++ L V V +++ + + +P+G ++WSTGVG ++ G
Sbjct: 308 SGVK-LVRGIVKEVKPQKLILDDGT-----EVPYGPLVWSTGVGPSSFVRSLDFPKDPGG 361
Query: 318 RRVLATNEWLRVKECENVYALGDCA 342
R + +EW+RV ++V+A+GDC+
Sbjct: 362 R--IGIDEWMRVPSVQDVFAIGDCS 384
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 428 TQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPRRFRGLGRHHFRPFRYKHFGQFA 487
T +LPA AQVA ++G YLA FN + + LG PF YKH G A
Sbjct: 390 TGKSTLPALAQVAEREGKYLANLFNVMGKAGGGRANSAKEMELGE----PFVYKHLGSMA 445
Query: 488 PLGGEQAAAEL----PGDWVSMGHSTQW-LWYSVYASKQVSWRTRVLVVSDWTRRFIFGR 542
+G +A +L G +SM W +W S Y ++ VSWR R V +W F+FGR
Sbjct: 446 TIGRYKALVDLRESKEGKGISMAGFLSWFIWRSAYLTRVVSWRNRFYVAINWLTTFVFGR 505
Query: 543 DSSRI 547
D SRI
Sbjct: 506 DISRI 510
>sp|Q4L4V6|Y2010_STAHJ NADH dehydrogenase-like protein SH2010 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2010 PE=3 SV=1
Length = 402
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 161/321 (50%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K+L D+ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSADEADITLINKNKYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ P+ ++IK+ +++F AE KID +V ET +YD L++A+G +
Sbjct: 63 LIYPIESVIKED--KVKFINAEVTKIDRNAKKV--------ETNHGIYDYDILVVALGFE 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ + ++ +E A+K+ R + D F S+E+ ++L ++ G G T
Sbjct: 113 SETFGINGMKDYAFQIENIETARKLSRHIEDKFANY---AASKEKDDKDLAILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
G+EF EL + I E L N Y ++ VR+T +++ +L F + + ++A + G+E
Sbjct: 170 GIEFLGELTERIPE-LCNKYGVDQNKVRVTCVEAAPKMLPMFSDELVNYAVNYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +KI + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVKINDQEQ--QLEAGTAIWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L ++ ++++ +GD +
Sbjct: 284 VTKQDLTIEGHDDIFVIGDVS 304
>sp|Q49W80|Y1834_STAS1 NADH dehydrogenase-like protein SSP1834 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1834 PE=3 SV=1
Length = 402
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + +V +++ +Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTITKLQKQISADEAEVTLINKNDYHYEATWLHEASAGTISYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++ K ++ F +AE KID +V + I ++D L++++G +
Sbjct: 63 LLYPVESVVNKD--KVNFVKAEVTKIDRNAKKVETDAGI--------FDFDILVVSLGFE 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ + ++ + A+K+ R + D F S+++ ++L ++ G G T
Sbjct: 113 SETFGIKGMKDYAFQIENVLTARKLSRHIEDKFANY---ASSKQKDDKDLAIIVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L N Y + V+IT +++ +L F + + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCNKYGVEQSKVKITCVEAAPKMLPMFSDELVNHAVNYLENKGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +K+ + V+W+ GV +++ E + +G+ +
Sbjct: 229 FKIGTPIVAANEKGFVVKVNDEEQ--QLEANTVVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L ++ ++++ +GDC+
Sbjct: 284 VTKQDLTIEGYDDIFVIGDCS 304
>sp|Q2YWP9|Y807_STAAB NADH dehydrogenase-like protein SAB0807 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB0807 PE=3 SV=1
Length = 402
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + ++ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKTISTEEAEITLINKNEYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++KK ++ F +AE KID +V ET ++D L++A+G
Sbjct: 63 VLYPVESVLKKD--KVNFVQAEVTKIDRDAKKV--------ETNQGIYDFDILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ ++ ++ + A+++ R + D F S+E+ +L ++ G G T
Sbjct: 113 SETFGIEGMKDHAFQIENVITARELSRHIEDKFANY---AASKEKDDNDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L + Y ++ V+IT +++ +L F E + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEVD--GEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L + +N++ +GDC+
Sbjct: 284 VTKQDLTINGYDNIFVIGDCS 304
>sp|Q8NXG0|Y823_STAAW NADH dehydrogenase-like protein MW0823 OS=Staphylococcus aureus
(strain MW2) GN=MW0823 PE=3 SV=1
Length = 402
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + ++ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++KK ++ F +AE KID +V ET ++D L++A+G
Sbjct: 63 VLYPVESVLKKD--KVNFVQAEVTKIDRDAKKV--------ETNQGIYDFDILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ ++ ++ + A+++ R + D F S+E+ +L ++ G G T
Sbjct: 113 SETFGIEGMKDHAFQIENVITARELSRHIEDKFANY---AASKEKDDNDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L + Y ++ V+IT +++ +L F E + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEVD--GEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L + +N++ +GDC+
Sbjct: 284 VTKQDLTINGYDNIFVIGDCS 304
>sp|Q6GAY5|Y811_STAAS NADH dehydrogenase-like protein SAS0811 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS0811 PE=3 SV=1
Length = 402
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + ++ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++KK ++ F +AE KID +V ET ++D L++A+G
Sbjct: 63 VLYPVESVLKKD--KVNFVQAEVTKIDRDAKKV--------ETNQGIYDFDILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ ++ ++ + A+++ R + D F S+E+ +L ++ G G T
Sbjct: 113 SETFGIEGMKDHAFQIENVITARELSRHIEDKFANY---AASKEKDDNDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L + Y ++ V+IT +++ +L F E + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEVD--GEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L + +N++ +GDC+
Sbjct: 284 VTKQDLTINGYDNIFVIGDCS 304
>sp|Q5HHE4|Y944_STAAC NADH dehydrogenase-like protein SACOL0944 OS=Staphylococcus aureus
(strain COL) GN=SACOL0944 PE=3 SV=1
Length = 402
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + ++ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++KK ++ F +AE KID +V ET ++D L++A+G
Sbjct: 63 VLYPVESVLKKD--KVNFVQAEVTKIDRDAKKV--------ETNQGIYDFDILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ ++ ++ + A+++ R + D F S+E+ +L ++ G G T
Sbjct: 113 SETFGIEGMKDHAFQIENVITARELSRHIEDKFANY---AASKEKDDNDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L + Y ++ V+IT +++ +L F E + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEVD--GEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L + +N++ +GDC+
Sbjct: 284 VTKQDLTINGYDNIFVIGDCS 304
>sp|Q99VE0|Y941_STAAM NADH dehydrogenase-like protein SAV0941 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV0941 PE=1 SV=1
Length = 402
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + ++ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++KK ++ F +AE KID +V ET ++D L++A+G
Sbjct: 63 VLYPVESVLKKD--KVNFVQAEVTKIDRDAKKV--------ETNQGIYDFDILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ ++ ++ + A+++ R + D F S+E+ +L ++ G G T
Sbjct: 113 SETFGIEGMKDHAFQIENVITARELSRHIEDKFANY---AASKEKDDNDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L + Y ++ V+IT +++ +L F E + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEVD--GEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L + +N++ +GDC+
Sbjct: 284 VTKQDLTINGYDNIFVIGDCS 304
>sp|Q6GIE7|Y903_STAAR NADH dehydrogenase-like protein SAR0903 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR0903 PE=3 SV=1
Length = 402
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + ++ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++KK ++ F +AE KID +V ET ++D L++A+G
Sbjct: 63 VLYPVESVLKKD--KVNFVQAEVTKIDRDAKKV--------ETNQGIYDFDILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ ++ ++ + A+++ R + D F S+E+ +L ++ G G T
Sbjct: 113 SETFGIEGMKDHAFQIENVITARELSRHIEDKFANY---AASKEKDDNDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L + Y ++ V+IT +++ +L F E + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEVD--GEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L + +N++ +GDC+
Sbjct: 284 VTKQDLTINGYDNIFVIGDCS 304
>sp|Q2FZV7|Y878_STAA8 NADH dehydrogenase-like protein SAOUHSC_00878 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_00878 PE=3 SV=1
Length = 402
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + ++ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++KK ++ F +AE KID +V ET ++D L++A+G
Sbjct: 63 VLYPVESVLKKD--KVNFVQAEVTKIDRDAKKV--------ETNQGIYDFDILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ ++ ++ + A+++ R + D F S+E+ +L ++ G G T
Sbjct: 113 SETFGIEGMKDHAFQIENVITARELSRHIEDKFANY---AASKEKDDNDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L + Y ++ V+IT +++ +L F E + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEVD--GEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L + +N++ +GDC+
Sbjct: 284 VTKQDLTINGYDNIFVIGDCS 304
>sp|Q2FID4|Y844_STAA3 NADH dehydrogenase-like protein SAUSA300_0844 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_0844 PE=3 SV=1
Length = 402
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + ++ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++KK ++ F +AE KID +V ET ++D L++A+G
Sbjct: 63 VLYPVESVLKKD--KVNFVQAEVTKIDRDAKKV--------ETNQGIYDFDILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ ++ ++ + A+++ R + D F S+E+ +L ++ G G T
Sbjct: 113 SETFGIEGMKDHAFQIENVITARELSRHIEDKFANY---AASKEKDDNDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L + Y ++ V+IT +++ +L F E + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEVD--GEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L + +N++ +GDC+
Sbjct: 284 VTKQDLTINGYDNIFVIGDCS 304
>sp|Q7A6J4|Y802_STAAN NADH dehydrogenase-like protein SA0802 OS=Staphylococcus aureus
(strain N315) GN=SA0802 PE=1 SV=1
Length = 402
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K + ++ +++ Y L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV +++KK ++ F +AE KID +V ET ++D L++A+G
Sbjct: 63 VLYPVESVLKKD--KVNFVQAEVTKIDRDAKKV--------ETNQGIYDFDILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ ++ ++ + A+++ R + D F S+E+ +L ++ G G T
Sbjct: 113 SETFGIEGMKDHAFQIENVITARELSRHIEDKFANY---AASKEKDDNDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVEF EL D I E L + Y ++ V+IT +++ +L F E + + A + G+E
Sbjct: 170 GVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEVD--GEKQQLNAGTSVWAAGVRGSKLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
T + L + +N++ +GDC+
Sbjct: 284 VTKQDLTINGYDNIFVIGDCS 304
>sp|Q8CPV5|Y635_STAES NADH dehydrogenase-like protein SE_0635 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_0635 PE=3 SV=1
Length = 402
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 157/321 (48%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K+L + ++ +++ Y + L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSADAAEITLINKNEYHYESTWLHEASAGTINYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV + K ++ F AE KID V DK DF D L++A+G
Sbjct: 63 LLYPVEKTVNKN--KVNFVVAEVTKIDRNAKRV----ETDKGVYDF----DILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ E+ ++ + ++K+ R + D F S+E+ ++L ++ G G T
Sbjct: 113 SETFGIDGMKEHAFQIENVLTSRKLSRHIEDKFANY---AASKEKDDKDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
G+EF EL D I E L + Y + V++T +++ +L F + + S+A K + G+E
Sbjct: 170 GIEFLGELTDRIPE-LCSKYGVDQSKVKLTCVEAAPKMLPMFSDDLVSYAVKYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G+ +
Sbjct: 229 FKIATPIVACNEKGFVVEV--NGEKQQLEAGTSVWTAGVRGSHLMEESFEGVKRGR---I 283
Query: 322 ATNEWLRVKECENVYALGDCA 342
+ L ++ +++ +GDC+
Sbjct: 284 INKQDLTIEGHNDIFVIGDCS 304
>sp|Q5HQM1|Y527_STAEQ NADH dehydrogenase-like protein SERP0527 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP0527 PE=3
SV=1
Length = 402
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 158/321 (49%), Gaps = 23/321 (7%)
Query: 26 REKKRVVLLGTGWAGISFL----KDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
+++K+V++LG G+AG+ + K+L + ++ +++ Y + L + GT+
Sbjct: 3 QDRKKVLVLGAGYAGLQTVTKLQKELSADAAEITLINKNEYHYESTWLHEASAGTINYED 62
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
+ PV + K ++ F AE KID V DK DF D L++A+G
Sbjct: 63 LLYPVEKTVNKD--KVNFVVAEVTKIDRNAKRV----ETDKGVYDF----DILVVALGFV 112
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
TFG G+ E+ ++ + ++K+ R + D F S+E+ ++L ++ G G T
Sbjct: 113 SETFGIDGMKEHAFQIENVLTSRKLSRHIEDKFANY---AASKEKDDKDLSILVGGAGFT 169
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
G+EF EL D I E L + Y + V++T +++ +L F + + S+A K + G+E
Sbjct: 170 GIEFLGELTDRIPE-LCSKYGVDQSKVKLTCVEAAPKMLPMFSDDLVSYAVKYLEDRGVE 228
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVL 321
+V ++K +++ G + G +W+ GV +++ E + +G RV+
Sbjct: 229 FKIATPIVACNEKGFVVEV--NGEKQQLEAGTSVWTAGVRGSHLMEESFEGVKRG--RVI 284
Query: 322 ATNEWLRVKECENVYALGDCA 342
+ L ++ +++ +GDC+
Sbjct: 285 NKQD-LTIEGHNDIFVIGDCS 304
>sp|P00393|DHNA_ECOLI NADH dehydrogenase OS=Escherichia coli (strain K12) GN=ndh PE=1
SV=2
Length = 434
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 23/298 (7%)
Query: 54 VQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNE 113
+ +V + + PLL V G+++ + + + RN QF I ID
Sbjct: 36 ITLVDRNHSHLWKPLLHEVATGSLDEG--VDALSYLAHARNHGFQFQLGSVIDIDREAKT 93
Query: 114 VFCKSNIDKETR----DFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRT 169
+ D++ + + YD L++A+G+ N F TPGV ENC FL A++ +
Sbjct: 94 ITIAELRDEKGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQE 153
Query: 170 VTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTV-KDLV 228
+ + F K + ++ IVGGG TGVE +AELH+ +++ Y + + +
Sbjct: 154 MLNLFLKYS----ANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEAL 209
Query: 229 RITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCS 288
+TL+++G+ IL + RIS+ A + + G+ VLT+ V + + + K
Sbjct: 210 NVTLVEAGERILPALPPRISAAAHNELTKLGVRVLTQTMVTSADEGGLHTKDGE-----Y 264
Query: 289 IPHGLVLWSTGVGTRPAIKDFMEQIG---QGKRRVLATNEWLRVKECENVYALGDCAT 343
I L++W+ G+ DF++ IG + L L+ ++YA+GDCA+
Sbjct: 265 IEADLMVWAAGIKA----PDFLKDIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCAS 318
>sp|O05267|YUMB_BACSU NADH dehydrogenase-like protein YumB OS=Bacillus subtilis (strain
168) GN=yumB PE=3 SV=1
Length = 406
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 144/327 (44%), Gaps = 38/327 (11%)
Query: 28 KKRVVLLGTGWAGI----SFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIA 83
K ++V+LG G+ G+ K + + D+ +V+ NY T + + GT+
Sbjct: 5 KPKIVILGAGYGGLMTVTRLTKYVGPNDADITLVNKHNYHYETTWMHEASAGTLHHDRCR 64
Query: 84 EPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVN 143
++++I + +AIKID K + + L+YDYL+I +GA
Sbjct: 65 YQIKDVINQSRVNFVQDTVKAIKIDEKKVVL----------ANGELQYDYLVIGLGAVPE 114
Query: 144 TFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGV 203
TFG G+ E + + ++ +R + F E+R L V+ G G TG+
Sbjct: 115 TFGIKGLKEYAFPIANINTSRLLREHIELQFATY---NTEAEKRPDRLTIVVGGAGFTGI 171
Query: 204 EFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE-- 261
EF EL + E L Y + LVRI +++ +L FD + +A + +G+E
Sbjct: 172 EFLGELAARVPE-LCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLEENGVEFK 230
Query: 262 ---VLTEC--RVVNVSDK-EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ 315
+ EC V V K E +IKS V+W+ GV P +++ + +
Sbjct: 231 IGTAVQECTPEGVRVGKKDEEPEQIKSQ---------TVVWAAGVRGHPIVEEAGFENMR 281
Query: 316 GKRRVLATNEWLRVKECENVYALGDCA 342
G+ +V N LR +NV+ LGD +
Sbjct: 282 GRVKV---NPDLRAPGHDNVFILGDSS 305
>sp|P44856|DHNA_HAEIN NADH dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=ndh PE=3 SV=1
Length = 444
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 27/234 (11%)
Query: 129 LEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCF----EKAVLPGLSE 184
+ YDYL+IA+G++ N F T GV +NC FL + A + + + + F E L + E
Sbjct: 109 IPYDYLVIAIGSKSNDFNTKGVADNCIFLDSSKQALRFQHKLLELFLKFSENRALDDIGE 168
Query: 185 EERKRNL------HFVIVGGGPTGVEFAAELHDYIQEDLINL-YPTV-KDLVRITLIQSG 236
EE K+ L + IVGGG TGVE AEL+ + EDL + Y + +++TL+++G
Sbjct: 169 EEFKQKLVDENKVNIAIVGGGATGVELTAELY-HAAEDLSSYGYGKIDSSCLQVTLVEAG 227
Query: 237 DHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLW 296
+L + E +S+ + + G V + T+ K G I L++W
Sbjct: 228 TRLLPALPENLSAAVLDELKEMGTNVQLNTMITEAQPN--TLITKDGG---EIKADLIVW 282
Query: 297 STGVGTRPAIKDF----MEQIGQGKRRVLATNEWLRVKECENVYALGDCATIDQ 346
+ GV + F + +I Q L + L+ ++++A+GDCA + Q
Sbjct: 283 AAGVRASTVTQQFDGLEINRINQ-----LVVKDTLQTTVDDSIFAIGDCAALIQ 331
>sp|P80861|YJLD_BACSU NADH dehydrogenase-like protein YjlD OS=Bacillus subtilis (strain
168) GN=yjlD PE=1 SV=3
Length = 392
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 144/320 (45%), Gaps = 31/320 (9%)
Query: 29 KRVVLLGTGWAGISFLKDLDVSSY------DVQVVSPQNYFAFTPLLPSVTCGTVEARSI 82
K +V+LG G+ G+ L L V + V VV+ L + G V +++
Sbjct: 3 KHIVILGAGYGGV--LSALTVRKHYTKEQARVTVVNKYPTHQIITELHRLAAGNVSEKAV 60
Query: 83 AEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV 142
A P+ + K ++ +++ E + +D K EV +L YD L++ +G+
Sbjct: 61 AMPLEKLFKGKDIDLKIAEVSSFSVD--KKEVALADG-------STLTYDALVVGLGSVT 111
Query: 143 NTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTG 202
FG PG+ EN LK DA K+ + V D + S+ + + + +I GGG TG
Sbjct: 112 AYFGIPGLEENSMVLKSAADANKVFQHVEDRVRE-----YSKTKNEADATILIGGGGLTG 166
Query: 203 VEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEV 262
VE EL D I +L Y +++ L+++G IL + + A ++ G+E
Sbjct: 167 VELVGELAD-IMPNLAKKYGVDHKEIKLKLVEAGPKILPVLPDDLIERATASLEKRGVEF 225
Query: 263 LTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLA 322
LT V NV I +K S + +W+ GV P + + ++ +G+ V
Sbjct: 226 LTGLPVTNVEGNVIDLKDGS-----KVVANTFVWTGGVQGNPLVGESGLEVNRGRATV-- 278
Query: 323 TNEWLRVKECENVYALGDCA 342
N++L+ E+V+ GD A
Sbjct: 279 -NDFLQSTSHEDVFVAGDSA 297
>sp|O32117|YUTJ_BACSU NADH dehydrogenase-like protein YutJ OS=Bacillus subtilis (strain
168) GN=yutJ PE=3 SV=2
Length = 355
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 135/324 (41%), Gaps = 58/324 (17%)
Query: 29 KRVVLLGTGWAGISFLKDL-------DVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS 81
K++VL+G G+ + L L DVS + ++ Y ++ GT+
Sbjct: 2 KKLVLIGGGYGNMRVLHRLLPNQLPDDVS---ITLIDRNPYHCLKTEYYALAAGTISDHH 58
Query: 82 IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
I + + + + ID + +V + D+E + YD II +G +
Sbjct: 59 I-----RVSFPEHPRLDVQYGDITSIDIVQKQVLFQ---DRE----PISYDDAIIGLGCE 106
Query: 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPT 201
PG E + ++ ++ +++ + + + A + IVG G +
Sbjct: 107 DKYHNVPGAPEFTYSIQTIDQSRETYQKLNNLSANATV--------------AIVGAGLS 152
Query: 202 GVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261
GVE A+EL + +D + I L G+ IL+SF ER+S + +K F+ G+
Sbjct: 153 GVELASELRES------------RDDLNIILFDRGNLILSSFPERLSKYVQKWFEEHGVR 200
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDF-MEQIGQGKRRV 320
++ + V + + A ++W+ G+ ++D +E+ QG R V
Sbjct: 201 IINRANITKVEEGVVYNHDDPISADA------IVWTAGIQPNKVVRDLDVEKDAQG-RIV 253
Query: 321 LATNEWLRVKECENVYALGDCATI 344
L + L E++Y +GDCA++
Sbjct: 254 LTPHHNL--PGDEHLYVVGDCASL 275
>sp|Q58065|NAOX_METJA Putative NADH oxidase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0649 PE=3 SV=2
Length = 448
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 154/321 (47%), Gaps = 43/321 (13%)
Query: 30 RVVLLGTGWAGISFLKDLDVSSYDVQVV--SPQNYFAFTPL-LPSVTCGTVEARS--IAE 84
R +++G+G AG++ + + D+++V + + A++P +P V G +++ I
Sbjct: 2 RAIIIGSGAAGLTTASTIRKYNKDMEIVVITKEKEIAYSPCAIPYVIEGAIKSFDDIIMH 61
Query: 85 PVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNT 144
+ ++RN +I E I +D+ N++ C +DK+ +F + YDYL++A GA+
Sbjct: 62 TPEDYKRERNIDI-LTETTVIDVDSKNNKIKC---VDKDGNEFEMNYDYLVLATGAE--P 115
Query: 145 FGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVE 204
F P +E K+L+ K+ RT+ D +A+L + E K+ +VG G G+E
Sbjct: 116 FIPP--IEG----KDLDGVFKV-RTIED--GRAILKYIEENGCKK---VAVVGAGAIGLE 163
Query: 205 FAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF-DERISSFAEKKFQRDGIEVL 263
A L + L + +++ +L F D ++ +K +++GI+V+
Sbjct: 164 MAYGLK-------------CRGL-DVLVVEMAPQVLPRFLDPDMAEIVQKYLEKEGIKVM 209
Query: 264 TECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLAT 323
+ + KE + G + + +V+ +TGV RP I+ + + + +
Sbjct: 210 LSKPLEKIVGKEKVEAVYVDGKLYDV--DMVIMATGV--RPNIELAKKAGCKIGKFAIEV 265
Query: 324 NEWLRVKECENVYALGDCATI 344
NE ++ N+YA+GDC +
Sbjct: 266 NEKMQT-SIPNIYAVGDCVEV 285
>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum
GN=aifB PE=3 SV=1
Length = 387
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 153/352 (43%), Gaps = 85/352 (24%)
Query: 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPV 86
EKKRV+++G G+ G K LD S ++V VV + F + G+V R++ EP
Sbjct: 4 EKKRVLIIGGGYGGCEVAKQLD-SKFNVTVVERKQTFFHS-------VGSV--RAVVEP- 52
Query: 87 RNIIKK---------RNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIA 137
++KK +N + F I AK E D + L +DYL+IA
Sbjct: 53 -ELVKKIYIPYDKLLKNGKFIFGTVIEISPTLAKLE-------DGQ----ELTFDYLVIA 100
Query: 138 VGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVG 197
G+ N+ F LE +K + + F+ ++ K+ +IVG
Sbjct: 101 TGS--NSLAP--------FKAPLE--KKSSSEILNYFQNF------SQQIKQAKSILIVG 142
Query: 198 GGPTGVEFAAELHDYIQEDLINLYPTVKD---LVRITLIQSGDHILN-SFDERISSFAEK 253
GG E +E+ + YP VKD + +IT++ SG ++N +++ ++ K
Sbjct: 143 GGAVACELVSEI--------VEKYP-VKDSELVKKITIVHSGSKLVNPKMNDKFTNVVSK 193
Query: 254 KFQRDGIEVLTECRVV-------NVSDK-----EITMKIKSTGAVCSIPHGLVLWSTGVG 301
++ +EV+ R+ N+ ++ +I+ + +T I L++W+ G+
Sbjct: 194 AMKKRNVEVILNDRITMPDEIKANLLNQTSPNIQISSQNYTTEKGVPIQADLIIWTVGIK 253
Query: 302 T-----RPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRK 348
T + + + + GQ L N +V+ NV+A+GDC D+ K
Sbjct: 254 TNSESYQSHFSNVINESGQ-----LKVNLSCQVQGYNNVFAIGDCTDFDEFK 300
>sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum
GN=aifA PE=3 SV=1
Length = 408
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 151/344 (43%), Gaps = 69/344 (20%)
Query: 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVS-PQNYFAFTPLLPSVTCGTVEARSIAEP 85
EKKRV+++G G+ G K LD S+++V VV Q +F + ++ + A+ I P
Sbjct: 26 EKKRVLIIGCGFGGSQVAKLLD-SNFEVTVVERKQTFFNSIASIRAIVEPEL-AKKIYIP 83
Query: 86 VRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNT 144
++K +F I+I K KE L +DYL+IA G+ +
Sbjct: 84 YDKLLKNG----KFIYGTVIEISPT----LVKLEDGKE-----LTFDYLVIATGSNSLAP 130
Query: 145 FGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVE 204
F P +KI T + K + E+ K+ +IVGGG G E
Sbjct: 131 FKAP--------------LEKISGTEIFNYYKDI-----SEQIKQAKSILIVGGGSVGCE 171
Query: 205 FAAELHDYIQEDLINLYPTV-KDLV-RITLIQSGDHIL-----NSFDERISSFAEKK--- 254
E +IN YP K+L +IT++ SG+ ++ N F+ I+ +K+
Sbjct: 172 VVGE--------IINKYPIKNKELAKKITIVHSGNKLVSSKTNNKFNNLINESMKKRNVS 223
Query: 255 -FQRDGIEV---LTECRVVNVS-DKEITMKIKSTGAVCSIPHGLVLWSTGV-----GTRP 304
D IE+ + +C + S + ++++K T SI V+W+ G+ +
Sbjct: 224 VILNDRIEIPDDIKQCFINQTSPNFQVSLKTYKTKNGLSIESDFVIWTIGIKLNSESYKT 283
Query: 305 AIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRK 348
+ + +IGQ + N+ +V+ +N++A+GD D+ K
Sbjct: 284 NFSNEINEIGQ-----IKVNQSCQVQGYDNIFAIGDITDFDELK 322
>sp|Q9UYU5|CDR_PYRAB Coenzyme A disulfide reductase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB14120 PE=3 SV=1
Length = 446
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 125/304 (41%), Gaps = 63/304 (20%)
Query: 52 YDVQVVSPQNYFAFTPL-LPSVTCGTVEARSIAE-PVRNIIKKRNAEIQFWEAEAIKIDA 109
+DV+V + + P +P V G + P IKKR ++ AE I++D
Sbjct: 33 WDVKVFEATEWVSHAPCGIPYVVEGISPTEKLMHYPPEVFIKKRGIDLHL-NAEVIEVDT 91
Query: 110 AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELE-DAQKIRR 168
V K + S E+DYL+ A GA GV F +L DA IR
Sbjct: 92 GYVRVREKDG------EKSYEWDYLVFANGASPQVPAIEGVDLKGVFTADLPPDAVAIRE 145
Query: 169 TVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLV 228
+ E+ R VIVGGG G+E A V
Sbjct: 146 YM---------------EKNRVEDVVIVGGGYIGLEMAEAF--------------VAQGK 176
Query: 229 RITLIQSGDHIL-NSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVC 287
R+T+I G+ IL SFD+ ++ E+K ++ VN+ +EI ++I+ V
Sbjct: 177 RVTMIVRGERILRRSFDKEVTDIIEEKLKQH----------VNLRLQEIVLRIEGKDRVE 226
Query: 288 SIP-------HGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATNEWLRVKECENVYAL 338
+ LV+ +TG+ +P I + Q+G G+ + TNE ++ ENVYA
Sbjct: 227 KVVTDAGEYRADLVILATGI--KPNI-ELARQLGVRIGETGAIWTNEKMQTS-VENVYAA 282
Query: 339 GDCA 342
GD A
Sbjct: 283 GDVA 286
>sp|Q8GXR9|DHNA_ARATH NADH dehydrogenase C1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=NDC1 PE=1 SV=2
Length = 519
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 145/353 (41%), Gaps = 62/353 (17%)
Query: 25 EREKKRVVLLGTGWAGISFLKDLDVSSY------DVQVVSPQNYFAFTPLLPSVTCGTVE 78
+ ++ RV +LG G+ G+ L+ + V +V F F P+L + G V+
Sbjct: 77 DNKRPRVCILGGGFGGLYTALRLESLVWPEDKKPQVVLVDQSERFVFKPMLYELLSGEVD 136
Query: 79 ARSIAEPVRNIIKKRNAEIQFWEAEAIK-------IDAAKNEVFCKSNIDKETRDFSLEY 131
IA +++ N IQF + +K + +E+ F +EY
Sbjct: 137 VWEIAPRFSDLLT--NTGIQFLR-DRVKTLLPCDHLGVNGSEISVTGGTVLLESGFKIEY 193
Query: 132 DYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKR-- 189
D+L++A+GA+ PG +E LEDA ++ EK LS+ ERK
Sbjct: 194 DWLVLALGAESKLDVVPGAMELAFPFYTLEDAIRVN-------EK-----LSKLERKNFK 241
Query: 190 ---NLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDER 246
+ +VG G GVE AA + + +Q+ I + I +IL S +
Sbjct: 242 DGSAIKVAVVGCGYAGVELAATISERLQDRGI-----------VQSINVSKNILTSAPDG 290
Query: 247 ISSFAEKKFQRDGIEVL------TECRVVNVSDKE---ITMKIKSTGAVCSIPHG-LVLW 296
A K +++L + R N+ + E + ++ G I +VLW
Sbjct: 291 NREAAMKVLTSRKVQLLLGYLVQSIKRASNLEEDEGYFLELQPAERGLESQIIEADIVLW 350
Query: 297 STGVGTRPAIKDFMEQIGQ-----GKRRVLATNEWLRVKECENVYALGDCATI 344
+ VG +P + +E G R T+E LRVK ++ALGD +++
Sbjct: 351 T--VGAKPLLTK-LEPSGPNVLPLNARGQAETDETLRVKGHPRIFALGDSSSL 400
>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1
Length = 433
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 45/225 (20%)
Query: 129 LEYDYLIIAVGAQV---NTFGTPGV-LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184
+Y L+IA G+ V FG G +N +L+E++DA K+ +
Sbjct: 112 FDYQTLVIATGSAVIRLTDFGVIGANAKNIFYLREVDDADKLYEAI-------------- 157
Query: 185 EERKRNLHFVIVGGGPTGVEFAA--ELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS 242
+RK+N V+VGGG G+E +A +L+D D+ +YP + R+
Sbjct: 158 -KRKKNAKRVVVGGGYIGLELSAVLKLNDL---DVTMVYPEPWCMPRL------------ 201
Query: 243 FDERISSFAEKKFQRDGIEVLTECRVVNV---SDKEITMKIKSTGAVCSIPHGLVLWSTG 299
F I++F E + GI ++ V SD E+ G V +V G
Sbjct: 202 FTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKLKDGRVLEADIVIV----G 257
Query: 300 VGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATI 344
VG RP I F Q+ + + + T+ + + +VYA+GD AT
Sbjct: 258 VGGRPQISLFKGQV-EEQHGGIKTDSFFKT-SVPDVYAVGDVATF 300
>sp|P35484|DLDH_ACHLA Dihydrolipoyl dehydrogenase (Fragment) OS=Acholeplasma laidlawii
GN=pdhD PE=3 SV=1
Length = 336
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 229 RITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCS 288
++T+I+ D IL + D+ I K +RDGIE+LT+ V V D ++T + G +
Sbjct: 198 KVTIIEMMDGILPTMDDDIRVAYAKTLKRDGIEILTKAEVKKVDDHKVTYSLD--GKETT 255
Query: 289 IPHGLVLWSTGVGTRPAIKDFMEQIG-QGKRRVLATNEWLRVKECENVYALGDC 341
I L+L S VGTR K +E +G + R + TNE+L+ VYA+GD
Sbjct: 256 IEGDLILMS--VGTRANSKG-LEHLGLEMDRANIKTNEYLQT-NVPGVYAIGDV 305
>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4
OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1
Length = 435
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 43/227 (18%)
Query: 129 LEYDYLIIAVGAQV---NTFGTPGV-LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184
+Y L+ A G+ V + FG PG +N +L+ELEDA + +
Sbjct: 114 FKYQTLLAATGSSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAM-------------- 159
Query: 185 EERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFD 244
E K V+VGGG G+E A L D+ +YP + R+ F
Sbjct: 160 -ETKEKGKAVVVGGGYIGLELGAALKAN-NLDVTMVYPEPWCMPRL------------FT 205
Query: 245 ERISSFAEKKFQRDGIEVL---TECRVVNVSDKEIT-MKIKSTGAVCSIPHGLVLWSTGV 300
I+SF E + GI ++ S+ E+T +K+K ++ +V+ GV
Sbjct: 206 AGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDG---RTLEADIVI--VGV 260
Query: 301 GTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATIDQR 347
G RP I F +Q+ + ++ L T+ + + +VYA+GD AT +
Sbjct: 261 GGRPIISLFKDQV-EEEKGGLKTDGFFKTS-LPDVYAIGDVATFPMK 305
>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2
OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1
Length = 488
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 45/226 (19%)
Query: 128 SLEYDYLIIAVGA---QVNTFGTPGV-LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLS 183
++ Y +LIIA GA ++ FG G EN +L++L DA ++ +
Sbjct: 111 TISYKFLIIATGARALKLEEFGVEGSDAENVCYLRDLADANRLATVI------------- 157
Query: 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS- 242
+ N + V++GGG G+E AA L V + + +T++ H +
Sbjct: 158 --QSSSNGNAVVIGGGYIGMECAASL--------------VINKINVTMVFPEAHCMARL 201
Query: 243 FDERISSFAEKKFQRDGIEVLTECRVVNV---SDKEITMKIKSTGAVCSIPHGLVLWSTG 299
F +I+S E ++ G++ + + + S+K++T G+ +P LV+ G
Sbjct: 202 FTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGS--HLPADLVV--VG 257
Query: 300 VGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECE-NVYALGDCATI 344
+G RP F Q+ K + + R++ + +VYA+GD AT
Sbjct: 258 IGIRPNTSLFEGQLTIEKGGIKVNS---RMQSSDSSVYAIGDVATF 300
>sp|Q9Z773|DLDH_CHLPN Dihydrolipoyl dehydrogenase OS=Chlamydia pneumoniae GN=lpdA PE=3
SV=1
Length = 461
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 115/271 (42%), Gaps = 62/271 (22%)
Query: 129 LEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERK 188
++ +++I+A G++ F PGV + L T E VLP K
Sbjct: 132 IKANHIILATGSEPRPF--PGVPFSSRILSS-----------TGILELEVLP-------K 171
Query: 189 RNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERIS 248
+ I+GGG G EFA+ H V IT+I++ DHIL ++ +S
Sbjct: 172 K---LAIIGGGVIGCEFASLFHTL--------------GVEITVIEALDHILAVNNKEVS 214
Query: 249 SFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLV-------LWSTGVG 301
KF + GI +LT+ + + + + ++I V + LV S G+
Sbjct: 215 QTVTNKFTKQGIRILTKASISAIEESQNQVRITVNDQVEEFDYVLVAIGRQFNTASIGLD 274
Query: 302 TRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATIDQRKVMEDIST---IFA 358
I+D R V+ +E +R N+YA+GD I + ++ +++ + A
Sbjct: 275 NAGVIRD--------DRGVIPVDETMRTN-VPNIYAIGD---ITGKWLLAHVASHQGVIA 322
Query: 359 AADKDNSGTLTVEEFQDVIDDILIRYPQVEL 389
A K+ SG V ++ I ++ +P++ +
Sbjct: 323 A--KNISGHHEVMDY-SAIPSVIFTHPEIAM 350
>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1
SV=1
Length = 433
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 45/226 (19%)
Query: 128 SLEYDYLIIAVGAQV---NTFGTPGV-LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLS 183
S +Y L+IA G V + FG G +N +L+E++DA ++ +
Sbjct: 112 SFKYQTLVIATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEAL------------- 158
Query: 184 EEERKRNLHFVIVGGGPTGVEFAAELH-DYIQEDLINLYPTVKDLVRITLIQSGDHILNS 242
+ K+N V+VGGG G+E +A L + I+ +++ YP + R+
Sbjct: 159 --KAKKNGKAVVVGGGYIGLELSAVLRLNNIEVNMV--YPEPWCMPRL------------ 202
Query: 243 FDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWS----T 298
F E I++F E ++ G+ ++ V D ++K + G VL +
Sbjct: 203 FTEGIAAFYEGYYKNKGVNIIKGTVAVGF-DTHPNGEVKE----VKLKDGRVLEADIVVV 257
Query: 299 GVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATI 344
GVG RP F Q+ + K + T+ + + +VYA+GD AT
Sbjct: 258 GVGARPLTTLFKGQVEEEKGGI-KTDAFFKT-SVPDVYAVGDVATF 301
>sp|P42454|RURE_ACIAD Rubredoxin-NAD(+) reductase OS=Acinetobacter sp. (strain ADP1)
GN=rubB PE=1 SV=2
Length = 393
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 140/337 (41%), Gaps = 75/337 (22%)
Query: 31 VVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEP-VRNI 89
+V++G+G AG + ++ + ++P++ C +A + A+P + N
Sbjct: 4 IVIIGSGMAGYTLAREF-------RKLNPEHELVMI-------CAD-DAVNYAKPTLSNA 48
Query: 90 IKKRNAEIQFWEAEAIKIDAA-KNEVFCKS---NIDKETRDFSLE---------YDYLII 136
+ A Q +A K+ K ++ ++ I+ ET + LE Y L++
Sbjct: 49 LSGNKAPEQIPLGDAEKMSTQLKLQILSETWVKAINPETHELKLEKNGQETIQPYSKLVL 108
Query: 137 AVGAQVNTFGTPG-VLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVI 195
AVGA G ++ H + L D + R L++ + KR VI
Sbjct: 109 AVGANPTRLAIAGDGSDDIHVVNSLIDYRAFREN------------LAKRQDKR---VVI 153
Query: 196 VGGGPTGVEFAAEL-HDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKK 254
+G G G EFA +L H Q +I+L P + L R+ HI ++F +K
Sbjct: 154 LGAGLIGCEFANDLQHTGHQVTVIDLSP--RPLGRLL----PAHIADAF--------QKN 199
Query: 255 FQRDGIEVLTECRVVNVS------DKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKD 308
+ GI + V VS D +T+ T + +VL + +G +P I D
Sbjct: 200 LEESGIHFVLSTTVEKVSKINDGQDYAVTLANGQT-----LVADIVL--SAIGLQPNI-D 251
Query: 309 FMEQIGQGKRRVLATNEWLRVKECENVYALGDCATID 345
+ G R + TN L E++YA+GDCA ++
Sbjct: 252 LAKHAGVHTSRGILTNSLLETN-LEDIYAIGDCAEVN 287
>sp|P43494|THCD_RHOER Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2
Length = 427
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 108/270 (40%), Gaps = 53/270 (19%)
Query: 83 AEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSL------EYDYLII 136
++P R + R A Q+++ I + K V ID++ + L EYD+LI+
Sbjct: 51 SDPDRESLALRPA--QYFDDHRITLTCGKPVV----RIDRDAQRVELIDATAIEYDHLIL 104
Query: 137 AVGAQVNTFGTPGV-LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVI 195
A GA+ PG L H+L+ +A+ + ++ C V+
Sbjct: 105 ATGARNRLLPVPGANLPGVHYLRTAGEAESLTSSMASCSS-----------------LVV 147
Query: 196 VGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH-ILNSFDERISSFAEKK 254
+G G G+E AA K + +T++++ D + + +S +
Sbjct: 148 IGAGFIGLEVAAAAR--------------KKGLDVTVVEAMDRPMARALSSVMSGYFSTA 193
Query: 255 FQRDGIE--VLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQ 312
G+ + T + +N +D ++G V +V G+G P I +
Sbjct: 194 HTEHGVHMRLSTGVKTINAADGRAAGVTTNSGDVIHADAVVV----GIGVVPNI-ELAAL 248
Query: 313 IGQGKRRVLATNEWLRVKECENVYALGDCA 342
G + +E+LR + EN+ A+GDCA
Sbjct: 249 TGLPVDNGIVVDEYLRTPD-ENISAIGDCA 277
>sp|Q49408|NAOX_MYCGE Probable NADH oxidase OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=nox PE=3 SV=1
Length = 478
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 139/347 (40%), Gaps = 70/347 (20%)
Query: 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRN 88
K+V+++G AG SF++ L S D +V N + + + CG A +++ V+N
Sbjct: 2 KKVIVIGINHAGTSFIRTLLSKSKDFKV----NAYDRNTNISFLGCGI--ALAVSGVVKN 55
Query: 89 I----------IKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAV 138
+K+ A I F + ID K +V + ++F+ ++D L+IA
Sbjct: 56 TDDLFYSNPEELKQMGANI-FMSHDVTNIDLIKKQVTVRD--LTSNKEFTDQFDQLVIAS 112
Query: 139 GA-----QVNTFGTPGVLE------NCHFLKELEDAQKIRRTVT--DCFEKAVLPGLSEE 185
GA V T LE C +K L + + +T D F K
Sbjct: 113 GAWPICMNVENKVTHKPLEFNYTDKYCGNVKNLISCKLYQHALTLIDSFRK--------- 163
Query: 186 ERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245
K IVG G G+E A + K + I L+ N+FD
Sbjct: 164 -DKTIKSVAIVGSGYIGLELAEAA-----------WLCKKQVTVIDLLDKPAG--NNFDH 209
Query: 246 RISSFAEKKFQRDGIEVLTECRV---VNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGT 302
+ EK Q+DG++++ C V V S + +++ + + L + +G
Sbjct: 210 EFTDELEKVMQKDGLKLMMGCSVKGFVVDSTNNVVKGVETDKGIVNAD----LVNQSIGF 265
Query: 303 RPAIK-----DFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATI 344
RP+ K E I G +V NE+L+ ++VY +G CA I
Sbjct: 266 RPSTKFVPKDQNFEFIHNGSIKV---NEFLQALNHKDVYVIGGCAAI 309
>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1
Length = 422
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 128/325 (39%), Gaps = 58/325 (17%)
Query: 31 VVLLGTGWAGISFLKDLDVSSY--DVQVVSPQNYFA--FTPLLPSVTCGTVEARSIAEPV 86
VV++GTG AG+ L S + ++++V PL + G A S+
Sbjct: 7 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66
Query: 87 RNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF- 145
+ +N ++ + I+ + +V +L+YD L++A G +
Sbjct: 67 PDAYAAQNIQL-LGGTQVTAINRDRQQVILSDG-------RALDYDRLVLATGGRPRPLP 118
Query: 146 ---GTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTG 202
G G N +L+ LEDA+ IRR L + R V++GGG G
Sbjct: 119 VASGAVGKANNFRYLRTLEDAECIRRQ------------LIADNR-----LVVIGGGYIG 161
Query: 203 VEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE-RISSFAEKKFQRDGIE 261
+E AA +K + +TL+ + +L +S+F E + G++
Sbjct: 162 LEVAAT--------------AIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVD 207
Query: 262 VLTECRVVNVSDKEITMKIKSTGAVCS----IPHGLVLWSTGVGTRPAIKDFMEQIGQGK 317
+ T +V T + K T +C +P LV+ G+G P + G
Sbjct: 208 IRTGTQVCGFEMS--TDQQKVTAVLCEDGTRLPADLVI--AGIGLIPNC-ELASAAGLQV 262
Query: 318 RRVLATNEWLRVKECENVYALGDCA 342
+ NE ++ + + A+GDCA
Sbjct: 263 DNGIVINEHMQTSD-PLIMAVGDCA 286
>sp|Q5JGP4|CDR_PYRKO Coenzyme A disulfide reductase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1299 PE=3 SV=1
Length = 442
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 139/330 (42%), Gaps = 63/330 (19%)
Query: 27 EKKRVVLLGTGWAGISF---LKDLDVSSYDVQVVSPQNYFAFTPL-LPSVTCGTVEARSI 82
E+K VV++G G AG+S +K L +DV+V + + P +P V G +
Sbjct: 2 ERKTVVVIGGGAAGMSTASRVKRLK-PEWDVKVFEATEWVSHAPCGIPYVVEGISPKEKL 60
Query: 83 AE-PVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
P IKKR ++ +AE I+++ + + +E + + E+DYL+ A GA
Sbjct: 61 MHYPPEVFIKKRGIDLHL-KAEVIEVEQG------RVRVREEDGEKTYEWDYLVFANGAS 113
Query: 142 VNTFGTPGVLENCHFLKEL-EDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGP 200
G+ F +L DA I T+ EK + + V++G G
Sbjct: 114 PQVPAIEGIDLPGVFTADLPPDAVAI----TEYLEKNPVE-----------NVVVIGTGY 158
Query: 201 TGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-NSFDERISSFAEKKFQRDG 259
+E A V+ +TLI + +L +FD+ I+ E+K +
Sbjct: 159 IAIEMAEAF--------------VERGKNVTLIGRSERVLRKTFDKEITDIVEEKLRNH- 203
Query: 260 IEVLTECRVVNVSDKEITMKIKSTGAVCSI-------PHGLVLWSTGVGTRPAIKDFMEQ 312
+N+ +E+T++I+ V + P LV+ +TG+ + +
Sbjct: 204 ---------LNLRLEEVTLRIEGKERVERVVTDAGEYPADLVIVATGIKPNTELARGL-G 253
Query: 313 IGQGKRRVLATNEWLRVKECENVYALGDCA 342
+ G+ + TN+ ++ ENVYA GD A
Sbjct: 254 VRIGETGAIWTNDRMQTS-VENVYAAGDVA 282
>sp|B5FXE5|AIFM2_TAEGU Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2
SV=1
Length = 373
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 63/266 (23%)
Query: 99 FWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLK 158
F + + + ID + +V D E L Y +LI+A G+ F PG
Sbjct: 76 FRQGKVVAIDPGRQQVVLS---DGE----ELHYSHLILATGSD-GPF--PGKFN------ 119
Query: 159 ELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELH-DYIQEDL 217
++ D + +T D + E +++ ++VGGG GVE AAE+ +Y +++
Sbjct: 120 QVIDMESAIQTYEDMVK----------EIEKSQRILVVGGGAAGVEMAAEIKTEYPGKEI 169
Query: 218 I-----------NLYPTVKDLVRITLIQSGDHILNSFDERIS---SFAEKKFQRDGIEVL 263
I L P+V+ +V+ L++ G +L S E++S + +FQ+D + V
Sbjct: 170 ILIHSKTALADVELLPSVRQVVKEILLRKGVRLLLS--EKVSDIENLRPNQFQKDMV-VR 226
Query: 264 TECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLAT 323
TE V D + +C+ G+ + S+ A D M G L
Sbjct: 227 TEKGTEVVVDMVV---------LCT---GIKINSSAYAA--AFGDKMASDG-----ALKV 267
Query: 324 NEWLRVKECENVYALGDCATIDQRKV 349
N+ L+++ EN+YA+GDCA + + K+
Sbjct: 268 NKHLQLEGYENIYAIGDCADLKEPKM 293
>sp|P42433|NASB_BACSU Assimilatory nitrate reductase electron transfer subunit
OS=Bacillus subtilis (strain 168) GN=nasB PE=2 SV=2
Length = 771
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 132/323 (40%), Gaps = 52/323 (16%)
Query: 27 EKKRVVLLGTGWAGISFLKD---LDVSSYDVQVVSPQNYFAFTP-LLPSVTCGTVEARSI 82
+K+R+VL G G AGI +++ L+ +++ + + + + LL SV G I
Sbjct: 2 KKQRLVLAGNGMAGIRCIEEVLKLNRHMFEIVIFGSEPHPNYNRILLSSVLQGEASLDDI 61
Query: 83 AEPVRNIIKKRNAEIQFWEAEA-IKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141
++ K I + E I+ID + +V R +L YD LI+A G+
Sbjct: 62 TLNSKDWYDKHG--ITLYTGETVIQIDTDQQQVITD-------RKRTLSYDKLIVATGSS 112
Query: 142 VNTFGTPGV-LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGP 200
+ PG + + + +ED Q + F+KA ++G G
Sbjct: 113 PHILPIPGADKKGVYGFRTIEDCQALMNMAQH-FQKA----------------AVIGAGL 155
Query: 201 TGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN-SFDERISSFAEKKFQRDG 259
G+E A L + +++I I+ D+ + + + ++ G
Sbjct: 156 LGLEAAVGLQHLGMD--------------VSVIHHSAGIMQKQLDQTAARLLQTELEQKG 201
Query: 260 IEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRR 319
+ L E V++S +I S+ L++ + GV +P I + G R
Sbjct: 202 LTFLLEKDTVSISGATKADRIHFKDG-SSLKADLIVMAAGV--KPNI-ELAVSAGIKVNR 257
Query: 320 VLATNEWLRVKECENVYALGDCA 342
+ N++++ E N+YA+G+CA
Sbjct: 258 GIIVNDFMQTSE-PNIYAVGECA 279
>sp|O15770|GSHR_PLAF7 Glutathione reductase OS=Plasmodium falciparum (isolate 3D7) GN=GR3
PE=2 SV=4
Length = 500
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 212 YIQEDLINLYPTVKDL-VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVV- 269
YI +LIN+ +K L + + G+ IL FDE + + E +++ I ++T VV
Sbjct: 186 YIAVELINV---IKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVE 242
Query: 270 --NVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWL 327
VSDK +++ + H V++ VG P E + K V N ++
Sbjct: 243 IKKVSDKNLSIHLSDGRIYEHFDH--VIYC--VGRSPD----TENLNLEKLNVETNNNYI 294
Query: 328 RVKE-----CENVYALGDCATIDQRKVMEDISTI 356
V E N+YA+GDC + + K +ED++ +
Sbjct: 295 VVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLL 328
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,523,033
Number of Sequences: 539616
Number of extensions: 9108476
Number of successful extensions: 26825
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 26497
Number of HSP's gapped (non-prelim): 281
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)