Query 041537
Match_columns 547
No_of_seqs 400 out of 3921
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:09:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 2E-89 4.4E-94 669.9 32.7 457 1-547 31-491 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 2.8E-78 6.2E-83 610.9 41.6 401 27-544 2-404 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 1.7E-67 3.7E-72 554.3 46.6 410 25-547 7-424 (424)
4 TIGR03169 Nterm_to_SelD pyridi 100.0 1.1E-48 2.3E-53 405.0 37.9 357 30-523 1-363 (364)
5 PRK13512 coenzyme A disulfide 100.0 3.9E-40 8.4E-45 348.2 32.4 274 28-344 1-281 (438)
6 PRK09754 phenylpropionate diox 100.0 2.9E-39 6.3E-44 337.7 34.4 271 27-345 2-280 (396)
7 PRK09564 coenzyme A disulfide 100.0 1.4E-38 3.1E-43 338.0 31.6 277 29-345 1-287 (444)
8 PRK04965 NADH:flavorubredoxin 100.0 3.1E-38 6.8E-43 328.0 32.1 268 28-344 2-277 (377)
9 PRK14989 nitrite reductase sub 100.0 1.4E-37 3.1E-42 347.8 33.4 271 28-345 3-286 (847)
10 TIGR02374 nitri_red_nirB nitri 100.0 3.2E-37 6.9E-42 345.6 32.4 269 31-345 1-277 (785)
11 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.7E-36 3.6E-41 314.9 29.0 269 26-343 2-313 (454)
12 TIGR01424 gluta_reduc_2 glutat 100.0 1.2E-35 2.5E-40 315.0 28.7 261 28-343 2-304 (446)
13 PRK06416 dihydrolipoamide dehy 100.0 2E-35 4.4E-40 315.1 30.0 269 27-343 3-312 (462)
14 PLN02507 glutathione reductase 100.0 3.3E-35 7E-40 314.3 29.6 267 26-343 23-341 (499)
15 PRK06467 dihydrolipoamide dehy 100.0 4.6E-35 9.9E-40 312.0 30.2 269 27-343 3-315 (471)
16 PRK05976 dihydrolipoamide dehy 100.0 9.2E-35 2E-39 310.5 29.4 272 27-343 3-321 (472)
17 PRK06370 mercuric reductase; V 100.0 1.6E-34 3.5E-39 308.1 30.7 266 26-343 3-312 (463)
18 TIGR01421 gluta_reduc_1 glutat 100.0 8.1E-35 1.7E-39 308.3 28.1 260 28-343 2-306 (450)
19 PRK05249 soluble pyridine nucl 100.0 1.6E-34 3.5E-39 308.3 28.4 268 27-343 4-313 (461)
20 PRK08010 pyridine nucleotide-d 100.0 1.5E-34 3.2E-39 306.5 27.8 267 27-343 2-295 (441)
21 PRK06116 glutathione reductase 100.0 2E-34 4.3E-39 306.4 28.7 259 28-343 4-306 (450)
22 PRK06115 dihydrolipoamide dehy 100.0 3.1E-34 6.8E-39 305.4 29.9 269 27-343 2-316 (466)
23 TIGR02053 MerA mercuric reduct 100.0 3.6E-34 7.7E-39 305.5 29.5 265 29-343 1-307 (463)
24 PRK07251 pyridine nucleotide-d 100.0 4.2E-34 9E-39 302.9 29.8 268 27-344 2-295 (438)
25 PRK14694 putative mercuric red 100.0 7.5E-34 1.6E-38 303.0 31.3 267 26-343 4-313 (468)
26 TIGR01423 trypano_reduc trypan 100.0 6.7E-34 1.4E-38 302.4 30.8 273 27-343 2-329 (486)
27 PLN02546 glutathione reductase 100.0 4.7E-34 1E-38 306.8 29.1 260 28-343 79-391 (558)
28 PTZ00058 glutathione reductase 100.0 7.3E-34 1.6E-38 305.1 29.0 269 25-345 45-378 (561)
29 PRK07818 dihydrolipoamide dehy 100.0 2.2E-33 4.7E-38 299.5 31.5 268 28-343 4-314 (466)
30 PRK07845 flavoprotein disulfid 100.0 1.1E-33 2.3E-38 301.3 28.9 267 28-343 1-315 (466)
31 TIGR01292 TRX_reduct thioredox 100.0 1.4E-33 3.1E-38 283.9 27.3 264 29-343 1-276 (300)
32 PRK14727 putative mercuric red 100.0 4.2E-33 9.1E-38 297.7 32.4 269 25-343 13-324 (479)
33 PRK07846 mycothione reductase; 100.0 5.8E-33 1.3E-37 294.0 32.5 258 29-343 2-303 (451)
34 TIGR01438 TGR thioredoxin and 100.0 2.1E-33 4.6E-38 299.2 28.1 267 28-343 2-321 (484)
35 TIGR01350 lipoamide_DH dihydro 100.0 4.2E-33 9.1E-38 297.5 30.4 266 29-343 2-310 (461)
36 TIGR03385 CoA_CoA_reduc CoA-di 100.0 3.5E-33 7.5E-38 295.1 29.1 262 42-345 1-274 (427)
37 PRK06912 acoL dihydrolipoamide 100.0 2.7E-33 5.8E-38 297.9 27.5 263 30-343 2-308 (458)
38 PRK06292 dihydrolipoamide dehy 100.0 4.2E-33 9.1E-38 297.3 28.9 263 27-343 2-309 (460)
39 PRK13748 putative mercuric red 100.0 3.7E-33 8.1E-38 304.9 28.0 266 27-343 97-406 (561)
40 PTZ00052 thioredoxin reductase 100.0 6.4E-32 1.4E-36 289.2 29.8 263 28-343 5-318 (499)
41 PRK10262 thioredoxin reductase 100.0 5.9E-32 1.3E-36 275.0 26.3 294 27-392 5-315 (321)
42 PRK06327 dihydrolipoamide dehy 100.0 1.2E-31 2.5E-36 286.5 29.7 269 28-343 4-325 (475)
43 KOG1336 Monodehydroascorbate/f 100.0 8E-32 1.7E-36 270.2 23.9 300 27-387 73-380 (478)
44 PTZ00153 lipoamide dehydrogena 100.0 2.8E-31 6E-36 288.7 29.5 270 28-343 116-473 (659)
45 TIGR03143 AhpF_homolog putativ 100.0 2.3E-31 5E-36 288.5 26.6 266 27-343 3-284 (555)
46 TIGR03452 mycothione_red mycot 100.0 1.2E-30 2.5E-35 276.7 30.8 261 28-343 2-306 (452)
47 TIGR01316 gltA glutamate synth 100.0 2.8E-31 6E-36 281.1 23.4 272 25-343 130-426 (449)
48 TIGR03140 AhpF alkyl hydropero 100.0 8E-31 1.7E-35 282.2 25.6 293 26-392 210-513 (515)
49 PRK11749 dihydropyrimidine deh 100.0 9.2E-31 2E-35 278.4 25.6 267 24-343 136-428 (457)
50 PRK12831 putative oxidoreducta 100.0 6.7E-31 1.5E-35 278.6 24.0 273 25-343 137-437 (464)
51 TIGR03315 Se_ygfK putative sel 100.0 3.9E-30 8.4E-35 287.5 30.8 320 26-493 535-874 (1012)
52 KOG1335 Dihydrolipoamide dehyd 100.0 3.9E-31 8.5E-36 255.9 17.4 273 27-345 38-357 (506)
53 PRK09853 putative selenate red 100.0 8.9E-30 1.9E-34 283.1 29.3 262 26-343 537-818 (1019)
54 PRK15317 alkyl hydroperoxide r 100.0 1.2E-29 2.5E-34 273.5 28.1 268 26-345 209-489 (517)
55 COG1251 NirB NAD(P)H-nitrite r 100.0 5.7E-30 1.2E-34 267.8 22.6 274 27-345 2-282 (793)
56 PRK12770 putative glutamate sy 100.0 1.5E-29 3.2E-34 260.4 25.4 281 27-343 17-326 (352)
57 PRK12778 putative bifunctional 100.0 2.7E-29 5.8E-34 281.9 25.0 271 26-343 429-726 (752)
58 KOG0405 Pyridine nucleotide-di 100.0 3.6E-29 7.7E-34 239.4 20.2 274 23-344 15-329 (478)
59 COG0492 TrxB Thioredoxin reduc 100.0 1.5E-28 3.2E-33 243.9 24.8 272 27-355 2-288 (305)
60 PRK12810 gltD glutamate syntha 100.0 1.2E-28 2.6E-33 262.7 25.5 275 26-343 141-441 (471)
61 PRK12779 putative bifunctional 100.0 1E-28 2.3E-33 279.0 26.0 297 26-392 304-627 (944)
62 PRK12814 putative NADPH-depend 100.0 3E-28 6.4E-33 268.3 24.9 262 26-343 191-477 (652)
63 PRK12775 putative trifunctiona 100.0 4.1E-27 8.8E-32 268.5 24.3 298 27-394 429-757 (1006)
64 TIGR01318 gltD_gamma_fam gluta 100.0 1.1E-26 2.4E-31 246.9 24.3 272 27-343 140-442 (467)
65 KOG4716 Thioredoxin reductase 100.0 5.3E-28 1.2E-32 230.4 12.2 273 25-343 16-342 (503)
66 PRK12769 putative oxidoreducta 100.0 9.3E-27 2E-31 257.5 24.0 273 26-343 325-628 (654)
67 TIGR01317 GOGAT_sm_gam glutama 99.9 1.4E-26 3.1E-31 246.9 23.4 277 27-343 142-455 (485)
68 PRK13984 putative oxidoreducta 99.9 3.3E-26 7.2E-31 251.6 26.0 276 25-344 280-580 (604)
69 PRK12809 putative oxidoreducta 99.9 2.1E-25 4.5E-30 245.7 24.0 274 26-343 308-611 (639)
70 COG0446 HcaD Uncharacterized N 99.9 1.7E-24 3.8E-29 227.6 27.5 268 31-345 1-280 (415)
71 PLN02852 ferredoxin-NADP+ redu 99.9 2.5E-24 5.5E-29 226.5 22.9 298 23-348 21-402 (491)
72 PRK12771 putative glutamate sy 99.9 6.2E-24 1.3E-28 231.5 25.7 264 25-343 134-420 (564)
73 KOG3851 Sulfide:quinone oxidor 99.9 2.1E-24 4.5E-29 204.7 16.7 290 25-345 36-337 (446)
74 KOG0404 Thioredoxin reductase 99.9 4.9E-24 1.1E-28 192.6 16.4 282 28-356 8-307 (322)
75 COG3634 AhpF Alkyl hydroperoxi 99.9 4.8E-24 1E-28 204.2 15.7 277 26-354 209-501 (520)
76 TIGR01372 soxA sarcosine oxida 99.9 1.3E-22 2.8E-27 233.1 30.2 269 27-344 162-450 (985)
77 PLN02172 flavin-containing mon 99.9 3.7E-22 8E-27 210.8 21.4 252 26-341 8-328 (461)
78 KOG1346 Programmed cell death 99.9 4.4E-22 9.6E-27 194.7 19.3 343 28-441 178-557 (659)
79 PRK06567 putative bifunctional 99.9 6.8E-21 1.5E-25 209.6 18.9 304 24-398 379-776 (1028)
80 COG0493 GltD NADPH-dependent g 99.9 8E-21 1.7E-25 198.1 15.9 304 25-391 120-450 (457)
81 PF07992 Pyr_redox_2: Pyridine 99.8 1.5E-20 3.3E-25 177.7 5.4 136 30-170 1-149 (201)
82 PF00743 FMO-like: Flavin-bind 99.8 2.9E-19 6.4E-24 191.2 15.6 161 28-213 1-206 (531)
83 KOG0399 Glutamate synthase [Am 99.8 2.2E-19 4.9E-24 192.4 11.6 298 23-389 1780-2117(2142)
84 KOG2755 Oxidoreductase [Genera 99.8 3.2E-19 6.9E-24 165.4 8.9 261 30-345 1-323 (334)
85 PF13738 Pyr_redox_3: Pyridine 99.6 3.7E-16 8E-21 148.0 6.5 163 32-238 1-201 (203)
86 PF13434 K_oxygenase: L-lysine 99.6 5.5E-15 1.2E-19 150.3 13.3 238 28-301 2-340 (341)
87 PTZ00188 adrenodoxin reductase 99.6 3E-14 6.6E-19 148.0 16.9 293 23-351 34-423 (506)
88 KOG1399 Flavin-containing mono 99.6 3.4E-14 7.3E-19 147.8 17.2 222 26-301 4-268 (448)
89 KOG1800 Ferredoxin/adrenodoxin 99.6 5.2E-15 1.1E-19 144.5 10.2 308 24-361 16-400 (468)
90 COG2072 TrkA Predicted flavopr 99.6 3.9E-14 8.3E-19 149.3 16.5 174 26-239 6-210 (443)
91 COG1148 HdrA Heterodisulfide r 99.5 1.6E-12 3.5E-17 130.8 23.2 297 26-343 122-522 (622)
92 PRK05329 anaerobic glycerol-3- 99.5 3.1E-13 6.6E-18 140.7 16.8 140 194-346 219-394 (422)
93 COG3486 IucD Lysine/ornithine 99.5 1.9E-12 4.2E-17 128.6 20.4 282 26-343 3-387 (436)
94 PF00070 Pyr_redox: Pyridine n 99.3 2.4E-11 5.1E-16 96.7 10.9 68 192-273 1-68 (80)
95 COG4529 Uncharacterized protei 99.0 1.5E-07 3.3E-12 96.7 23.2 175 28-237 1-231 (474)
96 COG2081 Predicted flavoprotein 99.0 4E-09 8.6E-14 105.6 11.2 110 26-141 1-166 (408)
97 TIGR03378 glycerol3P_GlpB glyc 98.8 3.3E-07 7.1E-12 94.7 20.3 127 203-345 236-395 (419)
98 PF01266 DAO: FAD dependent ox 98.8 3.6E-07 7.9E-12 93.8 19.5 87 218-314 122-211 (358)
99 PRK09897 hypothetical protein; 98.8 9.7E-08 2.1E-12 102.5 14.9 183 28-238 1-246 (534)
100 COG0579 Predicted dehydrogenas 98.8 1.4E-07 3E-12 97.5 15.4 89 215-306 125-215 (429)
101 PF03486 HI0933_like: HI0933-l 98.8 7.2E-08 1.6E-12 100.4 12.8 80 233-315 95-185 (409)
102 PLN02463 lycopene beta cyclase 98.7 6.7E-08 1.5E-12 102.0 12.0 110 25-143 25-170 (447)
103 PRK12409 D-amino acid dehydrog 98.7 5.9E-07 1.3E-11 94.7 17.2 35 28-62 1-35 (410)
104 TIGR02032 GG-red-SF geranylger 98.6 1.4E-07 3.1E-12 94.3 9.6 109 29-142 1-148 (295)
105 PRK12842 putative succinate de 98.6 1.1E-07 2.4E-12 104.3 8.7 94 191-300 158-273 (574)
106 PRK07843 3-ketosteroid-delta-1 98.6 6.9E-08 1.5E-12 105.4 7.1 96 191-300 161-267 (557)
107 PRK13977 myosin-cross-reactive 98.5 5.8E-06 1.3E-10 88.4 19.6 43 25-67 19-65 (576)
108 TIGR03364 HpnW_proposed FAD de 98.5 3.2E-06 7E-11 87.5 17.5 54 245-304 145-199 (365)
109 TIGR01790 carotene-cycl lycope 98.5 5.4E-07 1.2E-11 94.2 10.5 104 30-142 1-141 (388)
110 PRK06847 hypothetical protein; 98.5 6.8E-07 1.5E-11 93.0 11.0 36 27-62 3-38 (375)
111 PLN02697 lycopene epsilon cycl 98.5 8.2E-07 1.8E-11 95.4 11.7 107 27-142 107-248 (529)
112 COG1233 Phytoene dehydrogenase 98.5 3.4E-07 7.4E-12 98.3 8.8 41 27-67 2-42 (487)
113 PF01494 FAD_binding_3: FAD bi 98.5 1.3E-06 2.8E-11 89.6 12.8 55 246-300 112-170 (356)
114 COG0644 FixC Dehydrogenases (f 98.5 4.9E-07 1.1E-11 94.7 9.7 111 27-142 2-152 (396)
115 PRK00711 D-amino acid dehydrog 98.5 4.1E-06 9E-11 88.4 16.8 55 245-302 201-257 (416)
116 PTZ00383 malate:quinone oxidor 98.5 1.3E-06 2.9E-11 93.3 12.5 63 245-315 211-282 (497)
117 PRK10157 putative oxidoreducta 98.4 4.4E-06 9.6E-11 88.4 16.0 39 27-65 4-42 (428)
118 PF01134 GIDA: Glucose inhibit 98.4 3.8E-07 8.3E-12 93.2 7.5 106 30-140 1-150 (392)
119 TIGR01292 TRX_reduct thioredox 98.4 2.2E-06 4.8E-11 86.0 12.2 93 192-302 2-112 (300)
120 TIGR02023 BchP-ChlP geranylger 98.4 1.4E-06 2.9E-11 91.2 10.9 32 29-60 1-32 (388)
121 TIGR01377 soxA_mon sarcosine o 98.4 9.5E-06 2.1E-10 84.5 17.2 79 217-301 118-199 (380)
122 PLN00093 geranylgeranyl diphos 98.4 1.7E-06 3.8E-11 91.7 11.4 38 24-61 35-72 (450)
123 PRK04176 ribulose-1,5-biphosph 98.4 9.4E-07 2E-11 86.6 8.7 115 27-142 24-173 (257)
124 PRK11728 hydroxyglutarate oxid 98.4 8.5E-07 1.8E-11 92.9 9.0 55 244-302 148-204 (393)
125 TIGR01320 mal_quin_oxido malat 98.4 2E-05 4.4E-10 84.4 19.3 67 245-315 178-249 (483)
126 PRK11259 solA N-methyltryptoph 98.4 1.1E-05 2.5E-10 83.8 17.1 80 217-302 122-204 (376)
127 PRK06912 acoL dihydrolipoamide 98.4 1.8E-06 3.9E-11 92.2 11.2 102 28-145 170-271 (458)
128 PRK11101 glpA sn-glycerol-3-ph 98.4 8.2E-06 1.8E-10 89.0 16.0 103 216-325 123-236 (546)
129 PRK13339 malate:quinone oxidor 98.4 2E-06 4.3E-11 91.7 10.8 95 245-343 184-295 (497)
130 PRK07251 pyridine nucleotide-d 98.4 2E-06 4.4E-11 91.4 10.9 100 28-145 157-256 (438)
131 PRK07364 2-octaprenyl-6-methox 98.4 2.7E-06 5.8E-11 89.8 11.6 36 28-63 18-53 (415)
132 PF05834 Lycopene_cycl: Lycope 98.4 2.1E-06 4.5E-11 89.2 10.6 105 30-143 1-143 (374)
133 TIGR02734 crtI_fam phytoene de 98.3 1.2E-05 2.5E-10 87.2 16.6 53 245-299 219-273 (502)
134 PRK06184 hypothetical protein; 98.3 1.9E-06 4.1E-11 93.2 10.5 37 27-63 2-38 (502)
135 PRK07608 ubiquinone biosynthes 98.3 1.8E-06 4E-11 90.1 10.0 36 28-63 5-40 (388)
136 PRK05192 tRNA uridine 5-carbox 98.3 2E-06 4.3E-11 92.8 10.2 108 27-142 3-157 (618)
137 PRK06834 hypothetical protein; 98.3 2.3E-06 5E-11 91.9 10.7 112 27-144 2-158 (488)
138 PRK08773 2-octaprenyl-3-methyl 98.3 2.5E-06 5.4E-11 89.3 10.4 37 26-62 4-40 (392)
139 PF00070 Pyr_redox: Pyridine n 98.3 1.4E-06 3.1E-11 69.0 6.6 77 30-118 1-79 (80)
140 TIGR03385 CoA_CoA_reduc CoA-di 98.3 2.8E-06 6E-11 90.1 10.8 100 28-145 137-236 (427)
141 PRK10015 oxidoreductase; Provi 98.3 2.6E-06 5.7E-11 90.1 10.5 37 27-63 4-40 (429)
142 TIGR01373 soxB sarcosine oxida 98.3 2.5E-05 5.3E-10 82.3 17.7 53 245-300 183-238 (407)
143 PRK06134 putative FAD-binding 98.3 2.1E-06 4.6E-11 94.2 9.8 40 26-65 10-49 (581)
144 PRK08163 salicylate hydroxylas 98.3 2.3E-06 4.9E-11 89.7 9.4 37 27-63 3-39 (396)
145 TIGR03329 Phn_aa_oxid putative 98.3 4.1E-05 8.9E-10 81.9 19.2 55 244-302 182-237 (460)
146 PRK05976 dihydrolipoamide dehy 98.3 3.8E-06 8.3E-11 90.1 11.2 104 28-146 180-285 (472)
147 PRK07236 hypothetical protein; 98.3 4E-06 8.6E-11 87.6 11.0 37 26-62 4-40 (386)
148 TIGR00292 thiazole biosynthesi 98.3 3.4E-06 7.5E-11 82.4 9.7 38 27-64 20-57 (254)
149 PRK07333 2-octaprenyl-6-methox 98.3 3.4E-06 7.3E-11 88.6 10.4 35 28-62 1-37 (403)
150 COG1635 THI4 Ribulose 1,5-bisp 98.3 9.2E-07 2E-11 81.4 5.1 64 28-94 30-93 (262)
151 PRK06416 dihydrolipoamide dehy 98.3 4E-06 8.7E-11 89.8 11.0 105 28-146 172-276 (462)
152 PRK07494 2-octaprenyl-6-methox 98.3 4E-06 8.6E-11 87.6 10.7 36 27-62 6-41 (388)
153 COG1249 Lpd Pyruvate/2-oxoglut 98.3 4.6E-06 9.9E-11 87.8 11.0 104 26-146 171-276 (454)
154 KOG2820 FAD-dependent oxidored 98.3 4.9E-05 1.1E-09 74.5 17.0 90 214-311 122-217 (399)
155 PRK07233 hypothetical protein; 98.3 7.8E-06 1.7E-10 86.6 13.0 37 30-66 1-37 (434)
156 TIGR01350 lipoamide_DH dihydro 98.3 3.8E-06 8.1E-11 90.0 10.2 103 28-145 170-272 (461)
157 PRK05714 2-octaprenyl-3-methyl 98.3 4.2E-06 9.1E-11 88.0 10.4 34 28-61 2-35 (405)
158 COG0029 NadB Aspartate oxidase 98.3 2.7E-05 5.9E-10 80.3 15.7 32 30-62 9-40 (518)
159 PRK04965 NADH:flavorubredoxin 98.3 5.8E-06 1.3E-10 86.1 11.2 98 28-144 141-241 (377)
160 PF13454 NAD_binding_9: FAD-NA 98.3 9.4E-06 2E-10 73.3 11.1 102 32-140 1-155 (156)
161 TIGR02028 ChlP geranylgeranyl 98.2 5.3E-06 1.1E-10 87.0 10.6 34 29-62 1-34 (398)
162 PRK05257 malate:quinone oxidor 98.2 9E-05 2E-09 79.5 20.0 67 245-315 183-255 (494)
163 PRK08244 hypothetical protein; 98.2 4.7E-06 1E-10 90.0 10.1 35 28-62 2-36 (493)
164 PLN02464 glycerol-3-phosphate 98.2 5.3E-05 1.1E-09 83.8 18.2 92 215-313 200-303 (627)
165 PRK09564 coenzyme A disulfide 98.2 8.3E-06 1.8E-10 86.9 11.5 98 192-301 2-114 (444)
166 PRK06327 dihydrolipoamide dehy 98.2 8.5E-06 1.8E-10 87.5 11.4 103 28-145 183-287 (475)
167 PRK09754 phenylpropionate diox 98.2 7.1E-06 1.5E-10 86.0 10.5 99 28-144 144-243 (396)
168 PRK05868 hypothetical protein; 98.2 9E-06 2E-10 84.4 11.1 36 28-63 1-36 (372)
169 COG0654 UbiH 2-polyprenyl-6-me 98.2 8E-06 1.7E-10 85.3 10.4 33 28-60 2-34 (387)
170 PRK06126 hypothetical protein; 98.2 9.9E-06 2.2E-10 88.6 11.1 36 27-62 6-41 (545)
171 TIGR01988 Ubi-OHases Ubiquinon 98.2 7.6E-06 1.7E-10 85.2 9.7 33 30-62 1-33 (385)
172 PRK06753 hypothetical protein; 98.2 5.1E-06 1.1E-10 86.3 8.3 35 29-63 1-35 (373)
173 PRK09126 hypothetical protein; 98.2 9.4E-06 2E-10 84.9 10.4 36 27-62 2-37 (392)
174 PRK06370 mercuric reductase; V 98.2 9.8E-06 2.1E-10 86.8 10.5 102 28-145 171-274 (463)
175 PRK06183 mhpA 3-(3-hydroxyphen 98.1 1.4E-05 3E-10 87.3 11.6 37 26-62 8-44 (538)
176 TIGR02053 MerA mercuric reduct 98.1 1.1E-05 2.5E-10 86.3 10.7 103 28-146 166-270 (463)
177 TIGR00275 flavoprotein, HI0933 98.1 2.3E-05 4.9E-10 82.2 12.7 73 227-304 86-162 (400)
178 COG2509 Uncharacterized FAD-de 98.1 6.6E-05 1.4E-09 76.6 15.3 77 237-315 165-243 (486)
179 PRK07190 hypothetical protein; 98.1 1.1E-05 2.5E-10 86.6 10.5 35 28-62 5-39 (487)
180 PRK04176 ribulose-1,5-biphosph 98.1 0.00013 2.9E-09 71.4 17.2 136 192-344 27-225 (257)
181 COG3380 Predicted NAD/FAD-depe 98.1 4.5E-06 9.7E-11 79.2 6.3 34 28-61 1-34 (331)
182 TIGR01984 UbiH 2-polyprenyl-6- 98.1 9.6E-06 2.1E-10 84.5 9.6 33 30-62 1-34 (382)
183 TIGR02731 phytoene_desat phyto 98.1 8.7E-05 1.9E-09 79.3 17.1 38 30-67 1-38 (453)
184 PRK08243 4-hydroxybenzoate 3-m 98.1 1.7E-05 3.7E-10 83.1 11.4 35 28-62 2-36 (392)
185 PRK14694 putative mercuric red 98.1 1.6E-05 3.5E-10 85.2 11.3 98 28-145 178-276 (468)
186 PLN02985 squalene monooxygenas 98.1 2.1E-05 4.5E-10 85.0 12.1 36 26-61 41-76 (514)
187 PRK05732 2-octaprenyl-6-methox 98.1 1.2E-05 2.6E-10 84.2 10.1 35 26-60 1-38 (395)
188 COG0578 GlpA Glycerol-3-phosph 98.1 3.7E-05 8E-10 81.4 13.6 81 244-328 163-257 (532)
189 PF00890 FAD_binding_2: FAD bi 98.1 0.00011 2.4E-09 77.5 17.4 57 244-300 140-201 (417)
190 PRK08401 L-aspartate oxidase; 98.1 1.8E-05 3.8E-10 84.8 11.3 34 28-61 1-34 (466)
191 PRK07588 hypothetical protein; 98.1 8.5E-06 1.9E-10 85.3 8.8 35 29-63 1-35 (391)
192 PF13450 NAD_binding_8: NAD(P) 98.1 2.2E-06 4.7E-11 65.6 3.1 34 33-66 1-34 (68)
193 PLN02487 zeta-carotene desatur 98.1 9.5E-05 2.1E-09 80.4 16.9 39 27-65 74-112 (569)
194 PRK13512 coenzyme A disulfide 98.1 1.3E-05 2.9E-10 85.1 10.2 97 28-145 148-244 (438)
195 PRK08132 FAD-dependent oxidore 98.1 2.6E-05 5.6E-10 85.4 12.7 40 24-63 19-58 (547)
196 PRK07045 putative monooxygenas 98.1 1.5E-05 3.3E-10 83.2 10.4 37 27-63 4-40 (388)
197 PRK08020 ubiF 2-octaprenyl-3-m 98.1 1.8E-05 3.9E-10 82.8 10.9 35 27-61 4-38 (391)
198 COG1232 HemY Protoporphyrinoge 98.1 4E-05 8.8E-10 80.0 13.1 37 29-65 1-39 (444)
199 PRK08013 oxidoreductase; Provi 98.1 1.4E-05 3E-10 83.9 10.0 36 27-62 2-37 (400)
200 PRK11445 putative oxidoreducta 98.1 1.7E-05 3.7E-10 81.7 10.3 34 28-62 1-34 (351)
201 PRK05249 soluble pyridine nucl 98.1 1.7E-05 3.7E-10 84.9 10.7 101 28-145 175-275 (461)
202 TIGR01424 gluta_reduc_2 glutat 98.1 1.7E-05 3.6E-10 84.6 10.5 99 28-145 166-266 (446)
203 PLN02612 phytoene desaturase 98.1 0.00032 7E-09 76.8 20.4 43 24-66 89-131 (567)
204 PRK06475 salicylate hydroxylas 98.1 1.2E-05 2.7E-10 84.4 9.0 35 28-62 2-36 (400)
205 TIGR03219 salicylate_mono sali 98.1 9.5E-06 2.1E-10 85.6 8.1 35 29-63 1-36 (414)
206 PRK07846 mycothione reductase; 98.1 2.1E-05 4.6E-10 83.8 10.8 101 28-146 166-266 (451)
207 PRK06116 glutathione reductase 98.1 2E-05 4.4E-10 84.1 10.4 99 28-145 167-268 (450)
208 PRK06115 dihydrolipoamide dehy 98.0 2.4E-05 5.3E-10 83.8 11.0 105 27-145 173-279 (466)
209 TIGR01789 lycopene_cycl lycope 98.0 2.5E-05 5.4E-10 80.9 10.6 104 30-143 1-139 (370)
210 TIGR02732 zeta_caro_desat caro 98.0 0.00016 3.6E-09 77.4 17.2 36 30-65 1-36 (474)
211 TIGR02360 pbenz_hydroxyl 4-hyd 98.0 2.9E-05 6.3E-10 81.2 10.8 35 28-62 2-36 (390)
212 COG2081 Predicted flavoprotein 98.0 7E-05 1.5E-09 75.6 12.9 96 192-304 5-169 (408)
213 COG0446 HcaD Uncharacterized N 98.0 1.6E-05 3.5E-10 83.4 9.0 97 28-143 136-238 (415)
214 PRK06185 hypothetical protein; 98.0 2.5E-05 5.4E-10 82.2 10.4 36 27-62 5-40 (407)
215 PRK08849 2-octaprenyl-3-methyl 98.0 2.5E-05 5.5E-10 81.5 9.8 34 28-61 3-36 (384)
216 TIGR00292 thiazole biosynthesi 98.0 0.00024 5.3E-09 69.4 16.0 136 192-344 23-224 (254)
217 COG1231 Monoamine oxidase [Ami 98.0 7.6E-05 1.7E-09 76.5 12.8 44 26-69 5-48 (450)
218 PF01946 Thi4: Thi4 family; PD 98.0 4E-06 8.7E-11 77.7 3.3 65 27-94 16-80 (230)
219 PRK07845 flavoprotein disulfid 98.0 3.2E-05 6.9E-10 82.9 10.6 101 28-146 177-278 (466)
220 PRK07818 dihydrolipoamide dehy 98.0 3.1E-05 6.8E-10 83.0 10.5 103 28-145 172-276 (466)
221 PRK08010 pyridine nucleotide-d 98.0 3.4E-05 7.4E-10 82.1 10.7 101 27-145 157-257 (441)
222 PRK06481 fumarate reductase fl 98.0 5.3E-05 1.1E-09 82.0 12.2 37 27-63 60-96 (506)
223 PF12831 FAD_oxidored: FAD dep 98.0 3.7E-06 8E-11 88.9 3.3 106 30-140 1-148 (428)
224 PLN02507 glutathione reductase 98.0 3.6E-05 7.8E-10 83.0 10.7 102 28-146 203-304 (499)
225 TIGR03452 mycothione_red mycot 98.0 3.9E-05 8.6E-10 81.8 10.9 101 28-146 169-269 (452)
226 PRK12266 glpD glycerol-3-phosp 98.0 0.0001 2.2E-09 79.7 14.2 39 27-65 5-43 (508)
227 PRK08850 2-octaprenyl-6-methox 98.0 3E-05 6.4E-10 81.6 9.7 34 27-60 3-36 (405)
228 PRK13748 putative mercuric red 98.0 3.7E-05 8E-10 84.5 10.6 99 28-145 270-368 (561)
229 TIGR01421 gluta_reduc_1 glutat 98.0 3E-05 6.4E-10 82.7 9.4 100 28-145 166-268 (450)
230 PRK06617 2-octaprenyl-6-methox 97.9 3.7E-05 8E-10 80.0 9.8 33 28-60 1-33 (374)
231 TIGR01989 COQ6 Ubiquinone bios 97.9 0.00013 2.7E-09 77.7 13.9 34 29-62 1-38 (437)
232 PRK15317 alkyl hydroperoxide r 97.9 9.3E-05 2E-09 80.3 13.1 96 190-302 211-322 (517)
233 PRK14727 putative mercuric red 97.9 4.7E-05 1E-09 81.8 10.7 98 28-145 188-286 (479)
234 COG1148 HdrA Heterodisulfide r 97.9 0.00012 2.7E-09 74.9 12.7 129 131-273 54-206 (622)
235 COG3075 GlpB Anaerobic glycero 97.9 0.00029 6.4E-09 68.9 14.7 57 244-300 257-315 (421)
236 TIGR03140 AhpF alkyl hydropero 97.9 0.0001 2.2E-09 80.0 12.9 97 188-301 210-322 (515)
237 PRK07538 hypothetical protein; 97.9 3.6E-05 7.8E-10 81.2 9.2 34 29-62 1-34 (413)
238 PRK06292 dihydrolipoamide dehy 97.9 4.6E-05 1E-09 81.6 10.0 103 27-145 168-271 (460)
239 TIGR01316 gltA glutamate synth 97.9 3E-05 6.4E-10 82.6 8.4 89 188-300 131-228 (449)
240 COG2907 Predicted NAD/FAD-bind 97.9 0.00011 2.4E-09 72.3 11.4 41 26-67 6-46 (447)
241 PRK06996 hypothetical protein; 97.9 5.9E-05 1.3E-09 79.1 10.4 36 26-61 9-48 (398)
242 COG0665 DadA Glycine/D-amino a 97.9 4.9E-05 1.1E-09 79.3 9.6 36 26-61 2-37 (387)
243 PTZ00052 thioredoxin reductase 97.9 6.5E-05 1.4E-09 81.1 10.7 98 28-146 182-282 (499)
244 PRK11749 dihydropyrimidine deh 97.9 2.4E-05 5.3E-10 83.6 7.4 90 188-301 138-236 (457)
245 PRK01747 mnmC bifunctional tRN 97.9 3.9E-05 8.5E-10 85.8 9.3 34 28-61 260-293 (662)
246 KOG0029 Amine oxidase [Seconda 97.9 1E-05 2.2E-10 86.3 4.3 44 23-66 10-53 (501)
247 TIGR00136 gidA glucose-inhibit 97.9 6.4E-05 1.4E-09 81.2 10.3 107 29-143 1-155 (617)
248 PRK06467 dihydrolipoamide dehy 97.9 5.5E-05 1.2E-09 81.1 9.9 102 28-145 174-277 (471)
249 KOG2853 Possible oxidoreductas 97.9 0.00047 1E-08 67.7 15.1 37 27-63 85-125 (509)
250 TIGR01438 TGR thioredoxin and 97.9 6.3E-05 1.4E-09 80.8 10.2 101 28-145 180-282 (484)
251 PTZ00058 glutathione reductase 97.9 7.7E-05 1.7E-09 81.2 10.8 102 28-145 237-339 (561)
252 PRK10262 thioredoxin reductase 97.9 9.4E-05 2E-09 75.2 10.8 103 27-145 145-251 (321)
253 PRK09853 putative selenate red 97.9 7E-05 1.5E-09 85.3 10.6 89 188-301 537-634 (1019)
254 PF13738 Pyr_redox_3: Pyridine 97.9 9.2E-05 2E-09 69.7 9.9 96 194-306 1-142 (203)
255 PRK07573 sdhA succinate dehydr 97.9 0.00043 9.3E-09 76.9 16.6 36 27-62 34-69 (640)
256 TIGR02374 nitri_red_nirB nitri 97.9 6.8E-05 1.5E-09 85.3 10.6 100 28-145 140-241 (785)
257 PRK14989 nitrite reductase sub 97.8 8.5E-05 1.8E-09 84.6 11.2 98 191-301 4-112 (847)
258 PLN02172 flavin-containing mon 97.8 0.0002 4.4E-09 76.2 13.2 138 189-343 9-215 (461)
259 TIGR03169 Nterm_to_SelD pyridi 97.8 6.1E-05 1.3E-09 78.0 9.0 96 192-302 1-107 (364)
260 TIGR01423 trypano_reduc trypan 97.8 8.3E-05 1.8E-09 79.8 10.1 99 28-145 187-291 (486)
261 PRK08274 tricarballylate dehyd 97.8 9.7E-05 2.1E-09 79.2 10.6 35 27-61 3-37 (466)
262 TIGR01318 gltD_gamma_fam gluta 97.8 7.8E-05 1.7E-09 79.8 9.7 91 188-302 139-238 (467)
263 PRK12779 putative bifunctional 97.8 5.4E-05 1.2E-09 87.1 8.8 91 188-301 304-403 (944)
264 PTZ00318 NADH dehydrogenase-li 97.8 0.0001 2.2E-09 77.9 10.1 93 29-143 174-281 (424)
265 PLN02661 Putative thiazole syn 97.8 0.00016 3.5E-09 73.0 10.8 37 28-64 92-129 (357)
266 PTZ00363 rab-GDP dissociation 97.8 0.0023 5E-08 67.7 19.9 41 27-67 3-43 (443)
267 COG1252 Ndh NADH dehydrogenase 97.8 4.3E-05 9.4E-10 78.6 6.7 98 28-145 155-265 (405)
268 PRK08294 phenol 2-monooxygenas 97.8 0.00025 5.4E-09 78.7 13.2 36 27-62 31-67 (634)
269 PLN02815 L-aspartate oxidase 97.8 0.0018 4E-08 71.1 19.5 41 23-64 24-64 (594)
270 PF07992 Pyr_redox_2: Pyridine 97.8 7.2E-05 1.6E-09 70.2 7.6 139 192-345 1-200 (201)
271 TIGR01813 flavo_cyto_c flavocy 97.8 0.00013 2.8E-09 77.6 10.4 34 30-63 1-35 (439)
272 COG3349 Uncharacterized conser 97.8 2E-05 4.4E-10 82.1 3.9 39 29-67 1-39 (485)
273 PRK12770 putative glutamate sy 97.7 7.4E-05 1.6E-09 77.0 7.9 98 189-300 17-128 (352)
274 TIGR02032 GG-red-SF geranylger 97.7 0.00035 7.7E-09 69.6 12.5 93 192-300 2-146 (295)
275 PRK06847 hypothetical protein; 97.7 0.00037 8E-09 72.4 13.0 53 245-300 107-161 (375)
276 PRK12831 putative oxidoreducta 97.7 0.00012 2.6E-09 78.2 8.7 91 188-300 138-238 (464)
277 PRK05945 sdhA succinate dehydr 97.7 0.0013 2.9E-08 72.2 16.9 58 244-301 134-196 (575)
278 PTZ00139 Succinate dehydrogena 97.7 0.0017 3.8E-08 71.8 17.8 57 244-300 165-227 (617)
279 PF04820 Trp_halogenase: Trypt 97.7 8.9E-05 1.9E-09 78.9 7.3 32 30-61 1-35 (454)
280 PLN00128 Succinate dehydrogena 97.7 0.0017 3.6E-08 72.0 17.5 58 244-301 186-249 (635)
281 PRK07208 hypothetical protein; 97.7 3.8E-05 8.2E-10 82.7 4.4 41 26-66 2-42 (479)
282 PRK08958 sdhA succinate dehydr 97.7 0.0014 2.9E-08 72.3 16.5 58 244-301 142-205 (588)
283 PRK12778 putative bifunctional 97.6 0.00014 3.1E-09 82.5 9.1 90 188-300 429-527 (752)
284 PF00743 FMO-like: Flavin-bind 97.6 0.00047 1E-08 74.6 12.6 138 191-344 2-195 (531)
285 PF06039 Mqo: Malate:quinone o 97.6 1E-05 2.2E-10 83.1 -0.1 92 246-341 182-290 (488)
286 PTZ00367 squalene epoxidase; P 97.6 0.00019 4.1E-09 78.2 9.4 35 27-61 32-66 (567)
287 TIGR01317 GOGAT_sm_gam glutama 97.6 0.00022 4.8E-09 76.6 9.7 90 188-301 141-239 (485)
288 PRK09078 sdhA succinate dehydr 97.6 0.0023 4.9E-08 70.7 17.8 58 244-301 148-211 (598)
289 PTZ00153 lipoamide dehydrogena 97.6 0.0002 4.4E-09 79.2 9.5 107 28-146 312-431 (659)
290 PLN02268 probable polyamine ox 97.6 4.5E-05 9.8E-10 81.0 4.3 39 29-67 1-39 (435)
291 KOG1336 Monodehydroascorbate/f 97.6 0.00028 6E-09 72.6 9.7 102 28-148 213-319 (478)
292 PRK11883 protoporphyrinogen ox 97.6 4E-05 8.7E-10 81.7 3.9 38 29-66 1-40 (451)
293 TIGR00137 gid_trmFO tRNA:m(5)U 97.6 0.00014 3.1E-09 75.7 7.7 34 29-62 1-34 (433)
294 PRK08626 fumarate reductase fl 97.6 0.001 2.2E-08 74.1 14.9 55 246-300 159-218 (657)
295 TIGR01812 sdhA_frdA_Gneg succi 97.6 0.0019 4.1E-08 71.1 16.9 57 244-300 128-189 (566)
296 TIGR00551 nadB L-aspartate oxi 97.6 0.00034 7.4E-09 75.4 10.5 34 28-62 2-35 (488)
297 PRK06452 sdhA succinate dehydr 97.6 0.002 4.4E-08 70.6 16.6 35 28-62 5-39 (566)
298 PRK07236 hypothetical protein; 97.6 0.00042 9.1E-09 72.4 10.8 93 191-300 7-152 (386)
299 TIGR01789 lycopene_cycl lycope 97.6 0.00038 8.2E-09 72.2 10.2 95 193-304 2-140 (370)
300 PRK06175 L-aspartate oxidase; 97.6 0.00044 9.5E-09 73.3 10.9 34 28-62 4-37 (433)
301 TIGR02462 pyranose_ox pyranose 97.6 0.0018 3.9E-08 69.9 15.5 36 29-64 1-36 (544)
302 PRK06854 adenylylsulfate reduc 97.6 0.0031 6.6E-08 69.8 17.7 35 28-62 11-47 (608)
303 PLN02852 ferredoxin-NADP+ redu 97.6 0.00019 4E-09 76.6 7.8 91 189-301 25-125 (491)
304 PRK12809 putative oxidoreducta 97.6 0.00027 6E-09 78.6 9.5 90 188-301 308-406 (639)
305 PRK07804 L-aspartate oxidase; 97.5 0.00051 1.1E-08 75.0 11.3 37 26-62 14-50 (541)
306 PLN02546 glutathione reductase 97.5 0.00038 8.3E-09 75.8 10.3 102 27-145 251-353 (558)
307 COG0445 GidA Flavin-dependent 97.5 8.8E-05 1.9E-09 77.3 4.5 106 28-141 4-157 (621)
308 PRK12775 putative trifunctiona 97.5 0.00019 4.1E-09 83.4 7.5 92 188-301 428-528 (1006)
309 TIGR00562 proto_IX_ox protopor 97.5 7.9E-05 1.7E-09 79.8 4.2 39 28-66 2-44 (462)
310 PRK12814 putative NADPH-depend 97.5 0.00035 7.6E-09 77.9 9.1 90 188-301 191-289 (652)
311 PRK12769 putative oxidoreducta 97.5 0.00035 7.6E-09 78.1 9.1 90 188-301 325-423 (654)
312 PRK08205 sdhA succinate dehydr 97.5 0.005 1.1E-07 67.9 17.9 59 244-302 139-206 (583)
313 KOG2852 Possible oxidoreductas 97.5 0.00034 7.5E-09 67.2 7.5 35 26-60 8-48 (380)
314 PRK12416 protoporphyrinogen ox 97.5 8.9E-05 1.9E-09 79.4 4.1 40 28-67 1-46 (463)
315 PRK06069 sdhA succinate dehydr 97.4 0.0033 7.1E-08 69.3 16.1 58 244-301 136-199 (577)
316 KOG1335 Dihydrolipoamide dehyd 97.4 0.00037 8.1E-09 69.5 7.7 105 27-145 210-317 (506)
317 PLN02328 lysine-specific histo 97.4 0.0004 8.8E-09 77.8 8.8 44 23-66 233-276 (808)
318 TIGR03315 Se_ygfK putative sel 97.4 0.00044 9.5E-09 79.3 9.1 89 188-301 535-632 (1012)
319 PLN02576 protoporphyrinogen ox 97.4 0.00012 2.6E-09 79.2 4.4 39 28-66 12-51 (496)
320 TIGR03143 AhpF_homolog putativ 97.4 0.0012 2.5E-08 72.4 12.1 93 191-302 5-114 (555)
321 PRK06263 sdhA succinate dehydr 97.4 0.00062 1.3E-08 74.4 9.7 35 27-62 6-40 (543)
322 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00081 1.8E-08 70.2 9.9 99 192-304 2-139 (433)
323 PRK12810 gltD glutamate syntha 97.4 0.0006 1.3E-08 73.2 9.2 90 188-301 141-239 (471)
324 KOG1298 Squalene monooxygenase 97.4 0.00049 1.1E-08 68.7 7.7 113 26-142 43-208 (509)
325 TIGR02733 desat_CrtD C-3',4' d 97.4 0.00013 2.9E-09 78.8 4.1 39 29-67 2-40 (492)
326 PLN02529 lysine-specific histo 97.4 0.00018 3.9E-09 80.1 5.2 44 23-66 155-198 (738)
327 PRK05335 tRNA (uracil-5-)-meth 97.4 0.00014 3.1E-09 75.3 3.8 35 28-62 2-36 (436)
328 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.00018 3.8E-09 74.2 4.3 38 28-65 1-38 (377)
329 PLN02927 antheraxanthin epoxid 97.3 0.00023 4.9E-09 78.3 4.9 36 26-61 79-114 (668)
330 PRK07121 hypothetical protein; 97.3 0.00031 6.8E-09 75.8 5.9 40 27-66 19-58 (492)
331 COG0492 TrxB Thioredoxin reduc 97.3 0.0026 5.7E-08 63.7 12.0 94 192-304 5-117 (305)
332 TIGR01176 fum_red_Fp fumarate 97.3 0.0091 2E-07 65.7 17.2 57 244-300 131-193 (580)
333 KOG0399 Glutamate synthase [Am 97.3 0.00097 2.1E-08 74.4 9.1 120 152-301 1753-1881(2142)
334 PF01134 GIDA: Glucose inhibit 97.3 0.0036 7.8E-08 64.4 12.8 92 192-300 1-150 (392)
335 TIGR01372 soxA sarcosine oxida 97.3 0.0038 8.3E-08 73.0 14.6 101 189-303 162-287 (985)
336 PRK06834 hypothetical protein; 97.3 0.0032 7E-08 67.8 13.1 52 246-300 101-154 (488)
337 PRK01438 murD UDP-N-acetylmura 97.2 0.0014 3.1E-08 70.5 10.0 75 190-302 16-90 (480)
338 PLN02568 polyamine oxidase 97.2 0.00029 6.4E-09 76.4 4.7 40 27-66 4-48 (539)
339 COG1635 THI4 Ribulose 1,5-bisp 97.2 0.0083 1.8E-07 55.8 13.2 136 192-344 32-230 (262)
340 PRK08244 hypothetical protein; 97.2 0.004 8.6E-08 67.3 13.1 54 246-300 101-157 (493)
341 KOG2495 NADH-dehydrogenase (ub 97.2 0.00032 7E-09 71.0 4.1 100 28-144 218-331 (491)
342 COG0493 GltD NADPH-dependent g 97.2 0.0018 3.9E-08 68.5 9.7 197 28-300 5-218 (457)
343 PLN02463 lycopene beta cyclase 97.2 0.0036 7.7E-08 66.4 12.0 94 191-302 29-169 (447)
344 TIGR02730 carot_isom carotene 97.1 0.00034 7.4E-09 75.5 4.1 53 245-299 229-283 (493)
345 KOG2614 Kynurenine 3-monooxyge 97.1 0.00058 1.2E-08 69.2 5.2 38 28-65 2-39 (420)
346 KOG2844 Dimethylglycine dehydr 97.1 0.0093 2E-07 63.8 13.9 81 219-304 162-245 (856)
347 PRK13369 glycerol-3-phosphate 97.1 0.00049 1.1E-08 74.5 4.6 39 26-64 4-42 (502)
348 PRK06184 hypothetical protein; 97.1 0.0056 1.2E-07 66.3 12.8 52 247-300 111-166 (502)
349 PLN02661 Putative thiazole syn 97.1 0.021 4.6E-07 58.0 15.8 137 192-344 94-298 (357)
350 PRK01438 murD UDP-N-acetylmura 97.1 0.00079 1.7E-08 72.5 5.8 86 27-152 15-100 (480)
351 PRK08163 salicylate hydroxylas 97.1 0.0054 1.2E-07 64.2 12.0 50 248-300 112-164 (396)
352 KOG2665 Predicted FAD-dependen 97.0 0.0064 1.4E-07 59.4 10.9 38 26-63 46-85 (453)
353 PLN02676 polyamine oxidase 97.0 0.0006 1.3E-08 73.3 4.5 41 27-67 25-66 (487)
354 PRK07364 2-octaprenyl-6-methox 97.0 0.0065 1.4E-07 64.0 12.1 54 247-300 123-179 (415)
355 PRK07333 2-octaprenyl-6-methox 97.0 0.007 1.5E-07 63.5 12.3 53 245-300 111-165 (403)
356 PLN02697 lycopene epsilon cycl 97.0 0.0064 1.4E-07 65.7 12.0 95 191-302 109-248 (529)
357 PRK08773 2-octaprenyl-3-methyl 97.0 0.0093 2E-07 62.4 12.9 53 246-301 114-168 (392)
358 PRK13984 putative oxidoreducta 96.9 0.0017 3.8E-08 71.9 7.4 90 188-301 281-379 (604)
359 PRK07608 ubiquinone biosynthes 96.9 0.0069 1.5E-07 63.2 11.5 51 246-300 112-165 (388)
360 PRK08641 sdhA succinate dehydr 96.9 0.00078 1.7E-08 74.2 4.4 36 27-62 2-37 (589)
361 KOG0685 Flavin-containing amin 96.9 0.00072 1.6E-08 69.6 3.7 39 28-66 21-60 (498)
362 PRK09897 hypothetical protein; 96.9 0.0081 1.8E-07 65.0 11.9 44 256-301 118-165 (534)
363 PF01946 Thi4: Thi4 family; PD 96.9 0.042 9.2E-07 51.4 14.9 135 192-343 19-218 (230)
364 PRK07190 hypothetical protein; 96.9 0.012 2.7E-07 63.3 13.3 55 247-306 111-167 (487)
365 KOG2404 Fumarate reductase, fl 96.9 0.0044 9.5E-08 60.6 8.7 36 28-63 9-44 (477)
366 PRK06183 mhpA 3-(3-hydroxyphen 96.9 0.0096 2.1E-07 65.1 12.7 55 246-300 114-172 (538)
367 PTZ00188 adrenodoxin reductase 96.9 0.0024 5.1E-08 67.5 7.3 90 189-301 38-137 (506)
368 PRK08243 4-hydroxybenzoate 3-m 96.9 0.013 2.9E-07 61.3 13.1 59 248-308 106-167 (392)
369 PRK05714 2-octaprenyl-3-methyl 96.9 0.0061 1.3E-07 64.0 10.6 50 248-300 115-166 (405)
370 PRK06753 hypothetical protein; 96.8 0.0082 1.8E-07 62.3 11.0 45 259-308 110-156 (373)
371 PRK05192 tRNA uridine 5-carbox 96.8 0.01 2.2E-07 64.7 11.7 92 192-300 6-155 (618)
372 PRK12771 putative glutamate sy 96.8 0.0027 5.9E-08 69.8 7.6 89 188-301 135-233 (564)
373 PRK08132 FAD-dependent oxidore 96.8 0.015 3.3E-07 63.7 13.3 59 247-308 127-189 (547)
374 COG2072 TrkA Predicted flavopr 96.8 0.012 2.5E-07 62.6 11.9 136 190-344 8-187 (443)
375 KOG2415 Electron transfer flav 96.8 0.001 2.2E-08 67.0 3.5 44 25-68 73-122 (621)
376 COG0562 Glf UDP-galactopyranos 96.8 0.0013 2.8E-08 64.4 3.9 39 28-66 1-39 (374)
377 PRK05868 hypothetical protein; 96.8 0.0098 2.1E-07 61.8 10.8 47 257-308 116-164 (372)
378 PRK06126 hypothetical protein; 96.7 0.015 3.2E-07 63.7 12.7 54 247-300 128-186 (545)
379 COG0644 FixC Dehydrogenases (f 96.7 0.023 5E-07 59.5 13.7 93 192-300 5-150 (396)
380 TIGR01984 UbiH 2-polyprenyl-6- 96.7 0.015 3.2E-07 60.6 12.1 52 246-300 106-160 (382)
381 TIGR02485 CobZ_N-term precorri 96.7 0.0049 1.1E-07 65.4 8.6 30 33-62 1-30 (432)
382 PF06100 Strep_67kDa_ant: Stre 96.7 0.035 7.5E-07 58.3 14.3 54 245-300 207-272 (500)
383 PRK08255 salicylyl-CoA 5-hydro 96.7 0.0011 2.5E-08 75.2 3.9 34 29-62 1-36 (765)
384 PRK10015 oxidoreductase; Provi 96.7 0.019 4.2E-07 60.7 12.5 51 247-300 110-162 (429)
385 PRK12837 3-ketosteroid-delta-1 96.7 0.0017 3.6E-08 70.5 4.5 38 27-65 6-43 (513)
386 PF00732 GMC_oxred_N: GMC oxid 96.7 0.0016 3.6E-08 65.2 4.1 36 29-64 1-37 (296)
387 TIGR01790 carotene-cycl lycope 96.6 0.02 4.2E-07 59.8 12.1 92 193-302 2-141 (388)
388 COG0654 UbiH 2-polyprenyl-6-me 96.6 0.015 3.2E-07 60.8 11.1 101 191-309 3-167 (387)
389 PRK07588 hypothetical protein; 96.6 0.012 2.6E-07 61.5 10.4 40 258-300 115-156 (391)
390 PRK09126 hypothetical protein; 96.6 0.024 5.1E-07 59.2 12.3 47 251-300 116-165 (392)
391 PLN03000 amine oxidase 96.6 0.0022 4.8E-08 72.2 4.6 42 27-68 183-224 (881)
392 PRK06475 salicylate hydroxylas 96.5 0.027 6E-07 59.0 12.4 53 246-300 108-165 (400)
393 PRK07057 sdhA succinate dehydr 96.5 0.0028 6.1E-08 69.9 5.0 34 28-61 12-45 (591)
394 PRK12834 putative FAD-binding 96.5 0.0025 5.3E-08 69.8 4.5 34 28-61 4-37 (549)
395 PRK08020 ubiF 2-octaprenyl-3-m 96.5 0.024 5.2E-07 59.2 11.7 53 246-301 113-168 (391)
396 PRK11445 putative oxidoreducta 96.5 0.042 9E-07 56.6 13.3 45 256-300 109-155 (351)
397 PRK07803 sdhA succinate dehydr 96.5 0.002 4.3E-08 71.5 3.7 36 27-62 7-42 (626)
398 PRK08275 putative oxidoreducta 96.5 0.002 4.4E-08 70.5 3.7 37 26-62 7-45 (554)
399 KOG2311 NAD/FAD-utilizing prot 96.5 0.0038 8.3E-08 64.1 5.2 35 26-60 26-60 (679)
400 PRK08071 L-aspartate oxidase; 96.4 0.0033 7.1E-08 68.1 4.8 35 28-63 3-37 (510)
401 PF13434 K_oxygenase: L-lysine 96.4 0.0033 7.1E-08 64.3 4.5 38 26-63 188-227 (341)
402 PRK07538 hypothetical protein; 96.4 0.018 3.8E-07 60.8 10.1 51 250-300 107-163 (413)
403 TIGR01988 Ubi-OHases Ubiquinon 96.4 0.039 8.5E-07 57.3 12.6 52 246-300 107-161 (385)
404 PRK12835 3-ketosteroid-delta-1 96.4 0.0036 7.8E-08 68.9 5.0 39 27-65 10-48 (584)
405 PRK07395 L-aspartate oxidase; 96.4 0.0038 8.3E-08 68.2 5.1 36 27-63 8-43 (553)
406 PRK06567 putative bifunctional 96.4 0.005 1.1E-07 69.9 6.0 36 188-237 381-416 (1028)
407 PRK08013 oxidoreductase; Provi 96.3 0.041 8.8E-07 57.8 12.4 57 247-308 113-172 (400)
408 TIGR02360 pbenz_hydroxyl 4-hyd 96.3 0.04 8.6E-07 57.6 12.3 51 248-300 106-161 (390)
409 PRK06481 fumarate reductase fl 96.3 0.043 9.3E-07 59.5 12.8 53 246-299 191-248 (506)
410 PRK07045 putative monooxygenas 96.3 0.041 8.8E-07 57.4 12.4 57 247-308 108-169 (388)
411 PRK12839 hypothetical protein; 96.3 0.0039 8.4E-08 68.4 4.7 40 27-66 7-46 (572)
412 TIGR03219 salicylate_mono sali 96.3 0.02 4.3E-07 60.4 10.0 39 259-300 117-157 (414)
413 TIGR02061 aprA adenosine phosp 96.3 0.0031 6.7E-08 69.4 3.9 32 30-61 1-36 (614)
414 PRK12844 3-ketosteroid-delta-1 96.3 0.0034 7.4E-08 68.7 4.1 39 28-66 6-44 (557)
415 PRK12845 3-ketosteroid-delta-1 96.3 0.0048 1E-07 67.6 5.2 42 26-68 14-55 (564)
416 PRK06617 2-octaprenyl-6-methox 96.3 0.038 8.2E-07 57.4 11.7 51 246-300 105-158 (374)
417 PRK06996 hypothetical protein; 96.2 0.042 9E-07 57.6 11.8 55 245-300 115-172 (398)
418 PF05834 Lycopene_cycl: Lycope 96.2 0.034 7.4E-07 57.8 11.0 94 193-301 2-141 (374)
419 PRK08850 2-octaprenyl-6-methox 96.2 0.045 9.7E-07 57.5 12.0 48 250-300 116-166 (405)
420 PRK07494 2-octaprenyl-6-methox 96.2 0.037 8E-07 57.7 11.2 50 247-300 113-165 (388)
421 PRK08849 2-octaprenyl-3-methyl 96.2 0.034 7.3E-07 58.0 10.8 45 258-307 124-170 (384)
422 TIGR02023 BchP-ChlP geranylger 96.2 0.05 1.1E-06 56.8 12.1 53 247-300 94-153 (388)
423 PLN02976 amine oxidase 96.2 0.0043 9.4E-08 72.5 4.3 40 27-66 692-731 (1713)
424 KOG1399 Flavin-containing mono 96.2 0.033 7.2E-07 58.7 10.6 102 190-306 6-157 (448)
425 TIGR02028 ChlP geranylgeranyl 96.2 0.054 1.2E-06 56.8 12.3 21 192-212 2-22 (398)
426 PF12831 FAD_oxidored: FAD dep 96.2 0.0048 1E-07 65.3 4.3 91 193-299 2-147 (428)
427 PRK06185 hypothetical protein; 96.2 0.061 1.3E-06 56.5 12.6 53 246-300 109-167 (407)
428 KOG1276 Protoporphyrinogen oxi 96.1 0.0074 1.6E-07 61.4 5.2 40 26-65 9-50 (491)
429 PTZ00306 NADH-dependent fumara 96.1 0.0067 1.4E-07 72.1 5.4 40 26-65 407-446 (1167)
430 TIGR01813 flavo_cyto_c flavocy 96.0 0.075 1.6E-06 56.5 12.6 55 245-300 130-190 (439)
431 TIGR00136 gidA glucose-inhibit 96.0 0.071 1.5E-06 58.1 12.3 50 249-301 100-153 (617)
432 TIGR01811 sdhA_Bsu succinate d 95.9 0.0046 1E-07 68.3 2.9 31 31-61 1-31 (603)
433 PRK02106 choline dehydrogenase 95.9 0.0081 1.8E-07 66.0 4.7 35 28-62 5-40 (560)
434 PRK09231 fumarate reductase fl 95.9 0.0064 1.4E-07 66.9 3.8 35 28-62 4-40 (582)
435 PRK05335 tRNA (uracil-5-)-meth 95.9 0.021 4.6E-07 59.5 7.3 34 192-239 4-37 (436)
436 PRK09077 L-aspartate oxidase; 95.8 0.0086 1.9E-07 65.3 4.5 35 27-62 7-41 (536)
437 PRK12843 putative FAD-binding 95.8 0.01 2.2E-07 65.3 5.0 41 27-67 15-55 (578)
438 PRK14106 murD UDP-N-acetylmura 95.8 0.017 3.7E-07 61.6 6.5 35 27-61 4-38 (450)
439 PRK08274 tricarballylate dehyd 95.8 0.13 2.8E-06 55.2 13.3 54 247-300 133-190 (466)
440 COG1251 NirB NAD(P)H-nitrite r 95.8 0.042 9.1E-07 59.9 9.1 128 191-344 4-144 (793)
441 PLN00093 geranylgeranyl diphos 95.8 0.11 2.4E-06 55.4 12.3 22 191-212 40-61 (450)
442 KOG1346 Programmed cell death 95.7 0.019 4.1E-07 58.2 5.7 101 27-145 346-452 (659)
443 PRK13800 putative oxidoreducta 95.7 0.0094 2E-07 69.1 4.2 36 27-62 12-47 (897)
444 PRK05732 2-octaprenyl-6-methox 95.7 0.15 3.3E-06 53.2 12.9 51 248-301 115-168 (395)
445 PF04820 Trp_halogenase: Trypt 95.6 0.11 2.3E-06 55.5 11.6 49 249-300 158-209 (454)
446 COG1053 SdhA Succinate dehydro 95.6 0.0099 2.1E-07 64.6 3.6 36 27-62 5-40 (562)
447 COG1206 Gid NAD(FAD)-utilizing 95.6 0.013 2.8E-07 57.6 4.0 35 27-61 2-36 (439)
448 PF13454 NAD_binding_9: FAD-NA 95.6 0.15 3.3E-06 45.7 10.8 34 194-236 1-34 (156)
449 PRK07512 L-aspartate oxidase; 95.5 0.012 2.6E-07 63.9 4.0 33 28-62 9-41 (513)
450 KOG2755 Oxidoreductase [Genera 95.4 0.022 4.9E-07 54.3 4.9 92 192-303 1-105 (334)
451 KOG4716 Thioredoxin reductase 95.4 0.016 3.5E-07 57.2 4.0 104 25-144 195-302 (503)
452 COG3380 Predicted NAD/FAD-depe 95.4 0.071 1.5E-06 51.3 8.1 34 192-239 3-36 (331)
453 PRK08294 phenol 2-monooxygenas 95.4 0.16 3.4E-06 56.7 12.2 62 246-309 142-215 (634)
454 PF13241 NAD_binding_7: Putati 95.3 0.018 3.9E-07 47.9 3.7 35 27-61 6-40 (103)
455 PRK13369 glycerol-3-phosphate 95.3 0.21 4.6E-06 54.1 12.9 54 246-300 156-213 (502)
456 COG2303 BetA Choline dehydroge 95.3 0.02 4.3E-07 62.5 4.8 37 26-62 5-41 (542)
457 PRK08275 putative oxidoreducta 95.2 0.23 4.9E-06 54.6 12.9 55 247-301 139-199 (554)
458 PLN02927 antheraxanthin epoxid 95.2 0.17 3.6E-06 56.2 11.7 36 188-237 79-114 (668)
459 PRK07121 hypothetical protein; 95.2 0.25 5.3E-06 53.4 12.8 55 246-300 178-237 (492)
460 PLN02985 squalene monooxygenas 95.2 0.25 5.4E-06 53.6 12.7 53 246-300 148-206 (514)
461 TIGR01810 betA choline dehydro 95.1 0.02 4.3E-07 62.5 4.3 33 30-62 1-34 (532)
462 COG3573 Predicted oxidoreducta 95.1 0.025 5.3E-07 55.8 4.2 36 27-62 4-39 (552)
463 KOG2960 Protein involved in th 95.0 0.01 2.2E-07 54.7 1.3 38 29-66 77-116 (328)
464 KOG3923 D-aspartate oxidase [A 94.9 0.05 1.1E-06 53.0 5.7 34 27-60 2-42 (342)
465 PF13450 NAD_binding_8: NAD(P) 94.8 0.049 1.1E-06 41.4 4.3 32 195-240 1-32 (68)
466 TIGR01470 cysG_Nterm siroheme 94.7 0.037 8.1E-07 52.2 4.4 35 27-61 8-42 (205)
467 COG4529 Uncharacterized protei 94.7 0.25 5.3E-06 51.7 10.6 37 191-238 2-38 (474)
468 PRK06719 precorrin-2 dehydroge 94.7 0.041 8.9E-07 49.5 4.4 35 26-60 11-45 (157)
469 KOG4254 Phytoene desaturase [C 94.6 0.034 7.4E-07 57.1 3.9 50 26-75 12-61 (561)
470 PF01210 NAD_Gly3P_dh_N: NAD-d 94.4 0.032 7E-07 50.2 3.1 32 30-61 1-32 (157)
471 TIGR02352 thiamin_ThiO glycine 94.4 0.37 8E-06 48.9 11.2 81 217-302 111-193 (337)
472 KOG3851 Sulfide:quinone oxidor 94.3 0.019 4.2E-07 56.2 1.4 97 189-301 38-144 (446)
473 KOG0404 Thioredoxin reductase 94.3 0.22 4.7E-06 46.6 8.1 106 192-303 10-125 (322)
474 PLN02785 Protein HOTHEAD 94.3 0.048 1.1E-06 60.0 4.7 36 26-62 53-88 (587)
475 PRK06718 precorrin-2 dehydroge 94.0 0.061 1.3E-06 50.6 4.2 35 26-60 8-42 (202)
476 PF01494 FAD_binding_3: FAD bi 94.0 0.055 1.2E-06 55.1 4.2 36 192-241 3-38 (356)
477 PRK06175 L-aspartate oxidase; 94.0 0.62 1.3E-05 49.4 12.2 56 245-300 128-187 (433)
478 PRK06263 sdhA succinate dehydr 94.0 0.51 1.1E-05 51.6 11.9 54 247-300 136-195 (543)
479 COG0445 GidA Flavin-dependent 93.9 0.15 3.2E-06 54.1 6.8 22 192-213 6-27 (621)
480 KOG0405 Pyridine nucleotide-di 93.8 0.11 2.3E-06 51.8 5.4 102 25-145 186-290 (478)
481 TIGR00551 nadB L-aspartate oxi 93.7 0.78 1.7E-05 49.5 12.5 55 246-302 129-189 (488)
482 TIGR03862 flavo_PP4765 unchara 93.6 0.39 8.4E-06 49.6 9.5 82 232-315 71-160 (376)
483 COG0569 TrkA K+ transport syst 93.6 0.061 1.3E-06 51.5 3.4 33 29-61 1-33 (225)
484 PRK08255 salicylyl-CoA 5-hydro 93.6 0.21 4.5E-06 57.0 8.1 35 192-238 2-36 (765)
485 KOG2415 Electron transfer flav 93.5 1.1 2.5E-05 45.8 12.1 115 192-315 78-268 (621)
486 PRK02705 murD UDP-N-acetylmura 93.5 0.067 1.5E-06 57.2 3.8 33 30-62 2-34 (459)
487 PRK14106 murD UDP-N-acetylmura 93.4 0.35 7.7E-06 51.5 9.2 75 190-301 5-79 (450)
488 KOG2852 Possible oxidoreductas 93.3 0.59 1.3E-05 45.6 9.4 58 253-315 155-217 (380)
489 PF03721 UDPG_MGDP_dh_N: UDP-g 93.1 0.064 1.4E-06 49.7 2.6 34 29-62 1-34 (185)
490 COG3486 IucD Lysine/ornithine 93.1 0.16 3.6E-06 51.8 5.6 36 28-63 187-226 (436)
491 COG3634 AhpF Alkyl hydroperoxi 93.0 0.31 6.7E-06 48.6 7.1 108 188-303 209-326 (520)
492 PRK08401 L-aspartate oxidase; 92.9 1.4 2.9E-05 47.3 12.8 53 246-302 121-175 (466)
493 PF02737 3HCDH_N: 3-hydroxyacy 92.9 0.09 2E-06 48.5 3.3 33 30-62 1-33 (180)
494 PRK07804 L-aspartate oxidase; 92.9 1.3 2.8E-05 48.5 12.7 56 245-300 144-208 (541)
495 COG1004 Ugd Predicted UDP-gluc 92.9 0.23 5.1E-06 50.6 6.3 33 29-61 1-33 (414)
496 KOG0029 Amine oxidase [Seconda 92.8 0.13 2.8E-06 55.3 4.7 39 188-240 13-51 (501)
497 TIGR03377 glycerol3P_GlpA glyc 92.7 1 2.2E-05 49.0 11.6 103 216-325 102-215 (516)
498 TIGR01811 sdhA_Bsu succinate d 92.4 1.3 2.8E-05 49.2 12.1 43 258-300 146-194 (603)
499 PF01488 Shikimate_DH: Shikima 92.4 0.13 2.8E-06 45.0 3.4 35 26-60 10-45 (135)
500 PRK11064 wecC UDP-N-acetyl-D-m 92.2 0.13 2.8E-06 54.2 3.7 35 28-62 3-37 (415)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=2e-89 Score=669.85 Aligned_cols=457 Identities=59% Similarity=0.999 Sum_probs=417.7
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCcc
Q 041537 1 GGGLVAYSESQSEPGSPASEHGEKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEAR 80 (547)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~ 80 (547)
|+.+..|++.++....++ .++...+++|||+|+||+|.++++.|...-|+|+||++++||.|+|++|....|+++.+
T Consensus 31 g~~~~~y~~an~~~~~~~---~~~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~r 107 (491)
T KOG2495|consen 31 GGGLVAYSEANPSEKVPG---PKNGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELR 107 (491)
T ss_pred cceeEEEecCCccccCCC---CCCCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeeh
Confidence 456667876665544333 35567789999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCC-CceeeeecCEEEEccCCCccCCCCCCccccccccCC
Q 041537 81 SIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKE-TRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKE 159 (547)
Q Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g-~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~ 159 (547)
++.+|++.+.++...+++|+++++..||+++++|.+++...++ ..++.+.|||||+|+|+.++.|+|||+.||+++++.
T Consensus 108 SIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKE 187 (491)
T KOG2495|consen 108 SIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKE 187 (491)
T ss_pred hhhhhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhh
Confidence 9999999999988767999999999999999999998765433 335799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCcc
Q 041537 160 LEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHI 239 (547)
Q Consensus 160 ~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i 239 (547)
++||+++|+.+.+++|++.++.+++++|++.+++|||||||||+|+|++|++++.+++.+.||++.+.++|||+++.|++
T Consensus 188 v~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 188 VEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCc
Q 041537 240 LNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRR 319 (547)
Q Consensus 240 l~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g 319 (547)
|++|+.++.+++++.+.+.||++.+++.|+.|++..+..... +|+..+||+.++||+||+.++|.+..|..+++..++.
T Consensus 268 L~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~-~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr 346 (491)
T KOG2495|consen 268 LNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTK-DGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRR 346 (491)
T ss_pred HHHHHHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcC-CCceeeecceEEEecCCCCCchhhhhHhhcCCccCce
Confidence 999999999999999999999999999999999999998874 6877889999999999999999999998888764566
Q ss_pred cEEeCCCCCcCCCCCEEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhhccccccc
Q 041537 320 VLATNEWLRVKECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLNDV 399 (547)
Q Consensus 320 ~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (547)
++.||++||+++.+||||+|||+..
T Consensus 347 ~L~vDE~LrV~G~~nvfAiGDca~~------------------------------------------------------- 371 (491)
T KOG2495|consen 347 GLAVDEWLRVKGVKNVFAIGDCADQ------------------------------------------------------- 371 (491)
T ss_pred eeeeeceeeccCcCceEEecccccc-------------------------------------------------------
Confidence 8999999999999999999999943
Q ss_pred ccccCCCCCCCCcccchhhhhhhhccccccCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCCCCc-cccCCCCCCCCCC
Q 041537 400 TDLLKDPQGNPRREVDIEGFTLALSHVDTQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPR-RFRGLGRHHFRPF 478 (547)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~aq~A~~qg~~~a~~i~~~~~~~~~~~~~~-~~~~~~~~~~~pf 478 (547)
..+++|||+|.|||.|+|+||+++.+++..++.+. ++.+.+...++||
T Consensus 372 -------------------------------~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF 420 (491)
T KOG2495|consen 372 -------------------------------RGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPF 420 (491)
T ss_pred -------------------------------ccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhccCCc
Confidence 33688999999999999999999988766544433 5555556678999
Q ss_pred eeccccceEEccCcceeeecC-Cc-ccchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhcCcCCCCC
Q 041537 479 RYKHFGQFAPLGGEQAAAELP-GD-WVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSSRI 547 (547)
Q Consensus 479 ~~~~~G~~~~lG~~~av~~~~-~~-~~~~g~~a~~~w~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 547 (547)
+|+|+|+|+|||+++|+++++ |. +.+.|.++|++||++|++++.|||+|+++++||++.++||||++++
T Consensus 421 ~Y~H~GalA~lG~ekaiAdl~~g~~~~~~G~~s~~lWrS~Yls~~~S~R~R~lV~~dW~~~~~fGRd~s~i 491 (491)
T KOG2495|consen 421 KYKHLGALAYLGREKAIADLPVGKMWVSAGGSSFWLWRSAYLSKLVSWRNRFLVAIDWEKTFFFGRDSSSI 491 (491)
T ss_pred ccccccceeeccccchhhcCccCCeeeeccchhhHHHHHHHHHHhhhhhhheeeeeheeeeEEeccccccC
Confidence 999999999999999999998 66 7788999999999999999999999999999999999999999975
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.8e-78 Score=610.91 Aligned_cols=401 Identities=35% Similarity=0.589 Sum_probs=364.4
Q ss_pred CCCeEEEECCchHHHHHHHhcCCC--CCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVS--SYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEA 104 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~--g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 104 (547)
++++||||||||+|+.+|+.|.+. +++|||||++++|.|+|++|+++.|.++..++..+++.++++.+ +++|++++|
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~-~v~~~~~~V 80 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG-NVQFVQGEV 80 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC-ceEEEEEEE
Confidence 578999999999999999999865 49999999999999999999999999999999999999999765 699999999
Q ss_pred EEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCH
Q 041537 105 IKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184 (547)
Q Consensus 105 ~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 184 (547)
++||+++++|.+.+ +. .++||+||||+|+.+++|++||+.||++++++++||.++++++...|+.++....+
T Consensus 81 ~~ID~~~k~V~~~~----~~---~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~- 152 (405)
T COG1252 81 TDIDRDAKKVTLAD----LG---EISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDD- 152 (405)
T ss_pred EEEcccCCEEEeCC----Cc---cccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccc-
Confidence 99999999999986 23 89999999999999999999999999999999999999999999999998864322
Q ss_pred HHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEc
Q 041537 185 EERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLT 264 (547)
Q Consensus 185 ~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~ 264 (547)
+..++|+|||||+||+|+|++|.++..+.+.. |.....+.+|+||++++++||.|++++++++++.|+++||+|++
T Consensus 153 ---~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l 228 (405)
T COG1252 153 ---RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLL 228 (405)
T ss_pred ---cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEc
Confidence 45679999999999999999999999876666 44433478999999999999999999999999999999999999
Q ss_pred CceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCcCCCCCEEEeCccCcc
Q 041537 265 ECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCATI 344 (547)
Q Consensus 265 ~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 344 (547)
++.|++|+++.|++.+ |+. +|+||++|||+|++++|+++.|. ....+.+|++.||++||++++|+|||+||||.+
T Consensus 229 ~~~Vt~v~~~~v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l~-~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~ 303 (405)
T COG1252 229 GTPVTEVTPDGVTLKD---GEE-EIPADTVVWAAGVRASPLLKDLS-GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAV 303 (405)
T ss_pred CCceEEECCCcEEEcc---CCe-eEecCEEEEcCCCcCChhhhhcC-hhhhccCCCEEeCCCcccCCCCCeEEEeccccC
Confidence 9999999999999987 553 49999999999999999887651 123366799999999999999999999999987
Q ss_pred CcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhhcccccccccccCCCCCCCCcccchhhhhhhhc
Q 041537 345 DQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLNDVTDLLKDPQGNPRREVDIEGFTLALS 424 (547)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 424 (547)
.++
T Consensus 304 ~~~----------------------------------------------------------------------------- 306 (405)
T COG1252 304 IDP----------------------------------------------------------------------------- 306 (405)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 521
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCCCCccccCCCCCCCCCCeeccccceEEccCcceeeecCCcccc
Q 041537 425 HVDTQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPRRFRGLGRHHFRPFRYKHFGQFAPLGGEQAAAELPGDWVS 504 (547)
Q Consensus 425 ~~~~~~~~~p~~aq~A~~qg~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~G~~~~lG~~~av~~~~~~~~~ 504 (547)
+|+|++||.|+|||+++|+||.+.+++ .+++||+|+++|+|++||++.||+++. +..+
T Consensus 307 ------~p~P~tAQ~A~Qqg~~~a~ni~~~l~g---------------~~l~~f~y~~~Gtl~~lG~~~av~~~g-~~~l 364 (405)
T COG1252 307 ------RPVPPTAQAAHQQGEYAAKNIKARLKG---------------KPLKPFKYKDKGTLASLGDFSAVADLG-GVKL 364 (405)
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHhcC---------------CCCCCCcccceEEEEEccCCceeEEec-ceee
Confidence 579999999999999999999988765 378999999999999999999999995 4788
Q ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhcCcCC
Q 041537 505 MGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDS 544 (547)
Q Consensus 505 ~g~~a~~~w~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 544 (547)
.|++||++|+.+|+..++.+++++.+..+|++.++++++.
T Consensus 365 ~G~~a~~~k~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 404 (405)
T COG1252 365 KGFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYLTGRRS 404 (405)
T ss_pred ccHHHHHHHHHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence 9999999999999999999999999999999999999875
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1.7e-67 Score=554.30 Aligned_cols=410 Identities=44% Similarity=0.766 Sum_probs=364.4
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEE
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEA 104 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 104 (547)
..++++|||||||+||+.+|+.|.+.+++|||||+++++.|+|+++++..|..+.+++..+++.+++..+ ++|++++|
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~--~~~i~~~V 84 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLP--NRYLRAVV 84 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCC--eEEEEEEE
Confidence 4567899999999999999999987789999999999999999999999999998889999998888776 78999999
Q ss_pred EEEECCCCEEEEecCC------CCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHcc
Q 041537 105 IKIDAAKNEVFCKSNI------DKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAV 178 (547)
Q Consensus 105 ~~id~~~~~v~~~~~~------~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~ 178 (547)
+.||++++.|.+.... +++ .+++||+||||||+.++.+++||..++++++++++++.++++++.++++.+.
T Consensus 85 ~~Id~~~~~v~~~~~~~~~~~~~~g---~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~ 161 (424)
T PTZ00318 85 YDVDFEEKRVKCGVVSKSNNANVNT---FSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERAS 161 (424)
T ss_pred EEEEcCCCEEEEecccccccccCCc---eEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999883110 013 3799999999999999999999999999999999999999999999988877
Q ss_pred CCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhC
Q 041537 179 LPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRD 258 (547)
Q Consensus 179 ~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~ 258 (547)
.+..+.+..++.++++|||||++|+|+|.+|.++.++...+.|+.++++.+|+|+++++++++.+++.+.+.+.+.|+++
T Consensus 162 ~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~ 241 (424)
T PTZ00318 162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRL 241 (424)
T ss_pred CCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHC
Confidence 66666666667789999999999999999999998877777888887789999999999999999999999999999999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccEEeCCCCCcCCCCCEE
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATNEWLRVKECENVY 336 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~Vf 336 (547)
||+++++++|++++++.+.+.+ |++ +++|++||++|+.++++.+ .+++ +++|+|.||++||++++||||
T Consensus 242 gV~v~~~~~v~~v~~~~v~~~~---g~~--i~~d~vi~~~G~~~~~~~~----~~~l~~~~~G~I~Vd~~l~~~~~~~If 312 (424)
T PTZ00318 242 GVDIRTKTAVKEVLDKEVVLKD---GEV--IPTGLVVWSTGVGPGPLTK----QLKVDKTSRGRISVDDHLRVKPIPNVF 312 (424)
T ss_pred CCEEEeCCeEEEEeCCEEEECC---CCE--EEccEEEEccCCCCcchhh----hcCCcccCCCcEEeCCCcccCCCCCEE
Confidence 9999999999999998887754 775 9999999999987766443 3444 667999999999988999999
Q ss_pred EeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhhcccccccccccCCCCCCCCcccch
Q 041537 337 ALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLNDVTDLLKDPQGNPRREVDI 416 (547)
Q Consensus 337 aiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (547)
|+|||+..+.
T Consensus 313 AiGD~a~~~~---------------------------------------------------------------------- 322 (424)
T PTZ00318 313 ALGDCAANEE---------------------------------------------------------------------- 322 (424)
T ss_pred EEeccccCCC----------------------------------------------------------------------
Confidence 9999997531
Q ss_pred hhhhhhhccccccCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCCCCccccCCCCCCCCCCeeccccceEEccCcceee
Q 041537 417 EGFTLALSHVDTQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPRRFRGLGRHHFRPFRYKHFGQFAPLGGEQAAA 496 (547)
Q Consensus 417 ~~~~~~l~~~~~~~~~~p~~aq~A~~qg~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~G~~~~lG~~~av~ 496 (547)
.++|++++.|++||+++|+||.+.+.++ ...+||.|.++|++++||+++||+
T Consensus 323 --------------~~~~~~~~~A~~qg~~~A~ni~~~l~g~--------------~~~~~~~~~~~g~~~~lG~~~av~ 374 (424)
T PTZ00318 323 --------------RPLPTLAQVASQQGVYLAKEFNNELKGK--------------PMSKPFVYRSLGSLAYLGNYSAIV 374 (424)
T ss_pred --------------CCCCCchHHHHHHHHHHHHHHHHHhcCC--------------CCCCCCeecCCceEEEecCCceEE
Confidence 3578999999999999999998876542 247899999999999999999999
Q ss_pred ecCCcccchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhhcCcCCCCC
Q 041537 497 ELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSSRI 547 (547)
Q Consensus 497 ~~~~~~~~~g~~a~~~w~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 547 (547)
++.+ +.+.|++||++|+++|+.++++|+++++++++|+++++|+|+++|+
T Consensus 375 ~~~~-~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 424 (424)
T PTZ00318 375 QLGA-FDLSGFKALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424 (424)
T ss_pred EcCC-ceEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCccccC
Confidence 9855 6788999999999999999999999999999999999999999874
No 4
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.1e-48 Score=405.00 Aligned_cols=357 Identities=24% Similarity=0.366 Sum_probs=297.6
Q ss_pred eEEEECCchHHHHHHHhcC---CCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 30 RVVLLGTGWAGISFLKDLD---VSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~---~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
+|||||||+||+.+|..|+ ..+++|+|||+++++.|.+.++.+..|..+++++..+++++++..+ ++|+.++|+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g--v~~~~~~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAG--ARFVIAEATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcC--CEEEEEEEEE
Confidence 5999999999999999996 3578999999999999999999888888888888888999988887 7789999999
Q ss_pred EECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHH
Q 041537 107 IDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEE 186 (547)
Q Consensus 107 id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 186 (547)
||++++.|.+.+ |+ +++||+||||||+.++.|.+||..++++.+++++++...++.+...++..
T Consensus 79 id~~~~~V~~~~----g~---~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 142 (364)
T TIGR03169 79 IDPDRRKVLLAN----RP---PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP--------- 142 (364)
T ss_pred EecccCEEEECC----CC---cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcC---------
Confidence 999999999876 44 79999999999999999999998899999999999998777765543211
Q ss_pred HhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCc
Q 041537 187 RKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTEC 266 (547)
Q Consensus 187 ~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~ 266 (547)
...++++|||||++|+|+|.+|.+..++. ....+|+++ ..+.+++.+++.+.+.+.+.|++.||++++++
T Consensus 143 -~~~~~vvVvG~G~~g~E~A~~l~~~~~~~--------g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~ 212 (364)
T TIGR03169 143 -PGTKRLAVVGGGAAGVEIALALRRRLPKR--------GLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGA 212 (364)
T ss_pred -CCCceEEEECCCHHHHHHHHHHHHHHHhc--------CCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 12459999999999999999998765310 012589999 66788888999999999999999999999999
Q ss_pred eEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCcc
Q 041537 267 RVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATNEWLRVKECENVYALGDCATI 344 (547)
Q Consensus 267 ~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 344 (547)
.|++++++.+.+.+ |+. +++|.+|||+|..+++. +...++ +.+|+|.||+++|++++|+|||+|||+..
T Consensus 213 ~v~~i~~~~v~~~~---g~~--i~~D~vi~a~G~~p~~~----l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~ 283 (364)
T TIGR03169 213 PVTRGPDGALILAD---GRT--LPADAILWATGARAPPW----LAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVI 283 (364)
T ss_pred eeEEEcCCeEEeCC---CCE--EecCEEEEccCCChhhH----HHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeec
Confidence 99999888776643 765 99999999999765542 233343 66799999999999899999999999975
Q ss_pred CcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhhcccccccccccCCCCCCCCcccchhhhhhhhc
Q 041537 345 DQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLNDVTDLLKDPQGNPRREVDIEGFTLALS 424 (547)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 424 (547)
+.
T Consensus 284 ~~------------------------------------------------------------------------------ 285 (364)
T TIGR03169 284 TD------------------------------------------------------------------------------ 285 (364)
T ss_pred CC------------------------------------------------------------------------------
Confidence 31
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCCCCccccCCCCCCCCCCee-ccccceEEccCcceeeecCCccc
Q 041537 425 HVDTQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPRRFRGLGRHHFRPFRY-KHFGQFAPLGGEQAAAELPGDWV 503 (547)
Q Consensus 425 ~~~~~~~~~p~~aq~A~~qg~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~pf~~-~~~G~~~~lG~~~av~~~~~~~~ 503 (547)
.+.|++++.|++||+++|+||.+.+.++ +++||++ ...|+++++|.++||+... .+.
T Consensus 286 ------~~~~~~~~~A~~~g~~~a~ni~~~l~g~---------------~~~~~~~~~~~~~~~~~G~~~~v~~~~-~~~ 343 (364)
T TIGR03169 286 ------APRPKAGVYAVRQAPILAANLRASLRGQ---------------PLRPFRPQRDYLQLLNTGDRRAVASWG-WII 343 (364)
T ss_pred ------CCCCCchHHHHHhHHHHHHHHHHHhcCC---------------CCCCCcccccceeEEEcCCCcEEEeec-cee
Confidence 3467899999999999999998876542 4567875 4678999999999998775 367
Q ss_pred chhHHHHHHHHHHHHHhccc
Q 041537 504 SMGHSTQWLWYSVYASKQVS 523 (547)
Q Consensus 504 ~~g~~a~~~w~~~~~~~~~~ 523 (547)
+.|+++|++++.+...++..
T Consensus 344 ~~~~~~~~~k~~~~~~~~~~ 363 (364)
T TIGR03169 344 GPGRWLWRLKDWIDRRFMRR 363 (364)
T ss_pred ecCccHHHHHHHHhHHHHhc
Confidence 88999999998877766543
No 5
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=3.9e-40 Score=348.17 Aligned_cols=274 Identities=20% Similarity=0.325 Sum_probs=219.8
Q ss_pred CCeEEEECCchHHHHHHHhcCC--CCCeEEEEcCCCCCccCC-ChhhhhccccCcccc--chhHHHHHHhCCCcEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDV--SSYDVQVVSPQNYFAFTP-LLPSVTCGTVEARSI--AEPVRNIIKKRNAEIQFWEA 102 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~--~g~~Vtlid~~~~~~~~p-~l~~~~~g~~~~~~~--~~~~~~~~~~~~~~v~~~~~ 102 (547)
|++|||||||+||++||..|++ .+++|+|||+++++.|.+ .++.+..+.....+. ......+.++.++++. +.+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-~~~ 79 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVK-TYH 79 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEE-eCC
Confidence 4589999999999999999974 478999999999998875 667766655443321 2222445566674332 468
Q ss_pred EEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCC
Q 041537 103 EAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGL 182 (547)
Q Consensus 103 ~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 182 (547)
+|+.||++++.|.+.+.. +.+..++.||+||||||++|+.|++++ ++++.++++.++..+++.+..
T Consensus 80 ~V~~Id~~~~~v~~~~~~--~~~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~---------- 145 (438)
T PRK13512 80 EVIAINDERQTVTVLNRK--TNEQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA---------- 145 (438)
T ss_pred EEEEEECCCCEEEEEECC--CCcEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh----------
Confidence 999999999999987632 112346899999999999998877653 567778899998888876643
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEE
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
...++++|||||++|+|+|..|.++ +.+|+++++.+++++.+++++.+.+.+.|+++||++
T Consensus 146 -----~~~~~vvViGgG~ig~E~A~~l~~~--------------g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i 206 (438)
T PRK13512 146 -----NQVDKALVVGAGYISLEVLENLYER--------------GLHPTLIHRSDKINKLMDADMNQPILDELDKREIPY 206 (438)
T ss_pred -----cCCCEEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEE
Confidence 1235999999999999999999875 689999999999999999999999999999999999
Q ss_pred EcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccEEeCCCCCcCCCCCEEEeCc
Q 041537 263 LTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATNEWLRVKECENVYALGD 340 (547)
Q Consensus 263 ~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD 340 (547)
+++++|++++++.+++.+ |+. +++|.|+||+|. .|+. .+++..++ +++|+|.||+++|+ ++|+|||+||
T Consensus 207 ~~~~~v~~i~~~~v~~~~---g~~--~~~D~vl~a~G~--~pn~-~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD 277 (438)
T PRK13512 207 RLNEEIDAINGNEVTFKS---GKV--EHYDMIIEGVGT--HPNS-KFIESSNIKLDDKGFIPVNDKFET-NVPNIYAIGD 277 (438)
T ss_pred EECCeEEEEeCCEEEECC---CCE--EEeCEEEECcCC--CcCh-HHHHhcCcccCCCCcEEECCCccc-CCCCEEEeee
Confidence 999999999887776643 664 999999999995 5555 34556665 56789999999998 8999999999
Q ss_pred cCcc
Q 041537 341 CATI 344 (547)
Q Consensus 341 ~a~~ 344 (547)
|+..
T Consensus 278 ~~~~ 281 (438)
T PRK13512 278 IITS 281 (438)
T ss_pred eEEe
Confidence 9874
No 6
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.9e-39 Score=337.67 Aligned_cols=271 Identities=19% Similarity=0.333 Sum_probs=213.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCC--eEEEEcCCCCCccC-C-ChhhhhccccCccccchhHHHHHHhCCCcEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSY--DVQVVSPQNYFAFT-P-LLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEA 102 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~Vtlid~~~~~~~~-p-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 102 (547)
.+++|||||||+||++||..|++.++ +|+||++++++.|. | +...+..+.........+ .+++...+ ++++.+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--i~~~~g 78 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLP-ANWWQENN--VHLHSG 78 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCC-HHHHHHCC--CEEEcC
Confidence 35689999999999999999997665 79999999888773 3 434444443221111222 34455566 666655
Q ss_pred -EEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCc-cccccccCCHHHHHHHHHHHHHHHHHccCC
Q 041537 103 -EAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGV-LENCHFLKELEDAQKIRRTVTDCFEKAVLP 180 (547)
Q Consensus 103 -~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~-~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 180 (547)
.|+.+|++++.|.+.+ |. ++.||+||||||+.++.+++++. .++++.+++.+++.++++.+.
T Consensus 79 ~~V~~id~~~~~v~~~~----g~---~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~--------- 142 (396)
T PRK09754 79 VTIKTLGRDTRELVLTN----GE---SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQ--------- 142 (396)
T ss_pred CEEEEEECCCCEEEECC----CC---EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh---------
Confidence 7899999999998875 44 89999999999999987776654 367888899999998887642
Q ss_pred CCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-ccHHHHHHHHHHHHhCC
Q 041537 181 GLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS-FDERISSFAEKKFQRDG 259 (547)
Q Consensus 181 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-~~~~~~~~~~~~l~~~G 259 (547)
.+++++|||+|++|+|+|..|..+ +.+|+++++.+++++. +++.+.+.+.+.+++.|
T Consensus 143 --------~~~~vvViGgG~ig~E~A~~l~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 200 (396)
T PRK09754 143 --------PERSVVIVGAGTIGLELAASATQR--------------RCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAG 200 (396)
T ss_pred --------cCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCC
Confidence 345999999999999999999875 6899999999999875 68889999999999999
Q ss_pred cEEEcCceEEEEeCC-eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCcCCCCCEEEe
Q 041537 260 IEVLTECRVVNVSDK-EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYAL 338 (547)
Q Consensus 260 V~v~~~~~V~~v~~~-~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~Vfai 338 (547)
|+++++++|++++.+ .+.+. +.+|+. ++||.||+++|.. |+. .+.+.+++..+++|.||+++|| +.|+|||+
T Consensus 201 V~i~~~~~V~~i~~~~~~~v~-l~~g~~--i~aD~Vv~a~G~~--pn~-~l~~~~gl~~~~gi~vd~~~~t-s~~~IyA~ 273 (396)
T PRK09754 201 VRILLNNAIEHVVDGEKVELT-LQSGET--LQADVVIYGIGIS--AND-QLAREANLDTANGIVIDEACRT-CDPAIFAG 273 (396)
T ss_pred CEEEeCCeeEEEEcCCEEEEE-ECCCCE--EECCEEEECCCCC--hhh-HHHHhcCCCcCCCEEECCCCcc-CCCCEEEc
Confidence 999999999999754 34333 245765 9999999999954 444 4666677755567999999999 89999999
Q ss_pred CccCccC
Q 041537 339 GDCATID 345 (547)
Q Consensus 339 GD~a~~~ 345 (547)
|||+..+
T Consensus 274 GD~a~~~ 280 (396)
T PRK09754 274 GDVAITR 280 (396)
T ss_pred cceEeee
Confidence 9999753
No 7
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=337.99 Aligned_cols=277 Identities=26% Similarity=0.386 Sum_probs=215.8
Q ss_pred CeEEEECCchHHHHHHHhcCCC--CCeEEEEcCCCCCccCC-ChhhhhccccC-ccccchhHHHHHHhCCCcEEE-EEEE
Q 041537 29 KRVVLLGTGWAGISFLKDLDVS--SYDVQVVSPQNYFAFTP-LLPSVTCGTVE-ARSIAEPVRNIIKKRNAEIQF-WEAE 103 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~--g~~Vtlid~~~~~~~~p-~l~~~~~g~~~-~~~~~~~~~~~~~~~~~~v~~-~~~~ 103 (547)
++|||||||+||+++|..|++. +++|+|||+++++.|.+ .++.+..+... +.++.....+.+.+.+ +++ ..++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~~~~ 78 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSG--IDVKTEHE 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCC--CeEEecCE
Confidence 3799999999999999999864 46899999999988865 34444444322 2333444455566777 554 4679
Q ss_pred EEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCCC
Q 041537 104 AIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGL 182 (547)
Q Consensus 104 v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 182 (547)
|+.||++++.|.+.+.. .+. ..++.||+||||||++++.|++||++ ++++.+++.+++.++++.+.+
T Consensus 79 V~~id~~~~~v~~~~~~-~~~-~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~---------- 146 (444)
T PRK09564 79 VVKVDAKNKTITVKNLK-TGS-IFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD---------- 146 (444)
T ss_pred EEEEECCCCEEEEEECC-CCC-EEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh----------
Confidence 99999999999887521 022 12344999999999999999999986 677788899998888777642
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC-cccHHHHHHHHHHHHhCCcE
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN-SFDERISSFAEKKFQRDGIE 261 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-~~~~~~~~~~~~~l~~~GV~ 261 (547)
...++++|||+|++|+|+|..+.++ +.+|+++++.+++++ .+++++.+.+.+.|++.||+
T Consensus 147 -----~~~~~vvVvGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~ 207 (444)
T PRK09564 147 -----EEIKNIVIIGAGFIGLEAVEAAKHL--------------GKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVE 207 (444)
T ss_pred -----cCCCEEEEECCCHHHHHHHHHHHhc--------------CCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCE
Confidence 2345999999999999999998765 679999999999887 58999999999999999999
Q ss_pred EEcCceEEEEeCCe-EEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccEEeCCCCCcCCCCCEEEe
Q 041537 262 VLTECRVVNVSDKE-ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATNEWLRVKECENVYAL 338 (547)
Q Consensus 262 v~~~~~V~~v~~~~-v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~Vfai 338 (547)
++++++|+++++++ +..... ++.+ ++||.+|||+|. .|+. .++++.++ +.+|+|.||+++|| ++|||||+
T Consensus 208 v~~~~~v~~i~~~~~~~~v~~-~~~~--i~~d~vi~a~G~--~p~~-~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~ 280 (444)
T PRK09564 208 LHLNEFVKSLIGEDKVEGVVT-DKGE--YEADVVIVATGV--KPNT-EFLEDTGLKTLKNGAIIVDEYGET-SIENIYAA 280 (444)
T ss_pred EEcCCEEEEEecCCcEEEEEe-CCCE--EEcCEEEECcCC--CcCH-HHHHhcCccccCCCCEEECCCccc-CCCCEEEe
Confidence 99999999997543 322222 2433 999999999995 4444 35566665 56789999999998 89999999
Q ss_pred CccCccC
Q 041537 339 GDCATID 345 (547)
Q Consensus 339 GD~a~~~ 345 (547)
|||+..+
T Consensus 281 GD~~~~~ 287 (444)
T PRK09564 281 GDCATIY 287 (444)
T ss_pred eeEEEEE
Confidence 9999854
No 8
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=3.1e-38 Score=328.01 Aligned_cols=268 Identities=21% Similarity=0.375 Sum_probs=216.3
Q ss_pred CCeEEEECCchHHHHHHHhcCC--CCCeEEEEcCCCCCcc-CCChhhhhccccCccccch-hHHHHHHhCCCcEEEE-EE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDV--SSYDVQVVSPQNYFAF-TPLLPSVTCGTVEARSIAE-PVRNIIKKRNAEIQFW-EA 102 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~--~g~~Vtlid~~~~~~~-~p~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~v~~~-~~ 102 (547)
+++|||||||+||+++|..|++ ...+||||++++++.| .|.++.+..+...+.++.. ...+++++.+ ++++ .+
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~~~ 79 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFN--LRLFPHT 79 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCC--CEEECCC
Confidence 4689999999999999999984 4678999999998766 6777777766656655554 4567777787 5555 56
Q ss_pred EEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCC
Q 041537 103 EAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGL 182 (547)
Q Consensus 103 ~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 182 (547)
+|+.+|++++.|.++ +. .+.||+||||||+.+..|++||.+. .+.++++.++..++..+
T Consensus 80 ~V~~id~~~~~v~~~-----~~---~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~------------ 138 (377)
T PRK04965 80 WVTDIDAEAQVVKSQ-----GN---QWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL------------ 138 (377)
T ss_pred EEEEEECCCCEEEEC-----Ce---EEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh------------
Confidence 899999999888764 33 8999999999999999999999754 67788888877766553
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-ccHHHHHHHHHHHHhCCcE
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS-FDERISSFAEKKFQRDGIE 261 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-~~~~~~~~~~~~l~~~GV~ 261 (547)
...++++|||+|++|+|+|..|.+. +.+|+++++.+++++. +++.+.+.+.+.|++.||+
T Consensus 139 -----~~~~~vvViGgG~~g~e~A~~L~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~ 199 (377)
T PRK04965 139 -----RDAQRVLVVGGGLIGTELAMDLCRA--------------GKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVH 199 (377)
T ss_pred -----hcCCeEEEECCCHHHHHHHHHHHhc--------------CCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCE
Confidence 2345999999999999999999865 6899999999999875 6888999999999999999
Q ss_pred EEcCceEEEEeCC--eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCcCCCCCEEEeC
Q 041537 262 VLTECRVVNVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALG 339 (547)
Q Consensus 262 v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~VfaiG 339 (547)
+++++.|++++.+ .+.+.. .+|++ ++||.||+|+|..++ . .+.+..++..+++|.||++||| +.|||||+|
T Consensus 200 i~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~vI~a~G~~p~--~-~l~~~~gl~~~~gi~vd~~l~t-s~~~VyA~G 272 (377)
T PRK04965 200 LLLKSQLQGLEKTDSGIRATL-DSGRS--IEVDAVIAAAGLRPN--T-ALARRAGLAVNRGIVVDSYLQT-SAPDIYALG 272 (377)
T ss_pred EEECCeEEEEEccCCEEEEEE-cCCcE--EECCEEEECcCCCcc--h-HHHHHCCCCcCCCEEECCCccc-CCCCEEEee
Confidence 9999999999754 333332 34665 999999999996544 3 4566677743334999999999 899999999
Q ss_pred ccCcc
Q 041537 340 DCATI 344 (547)
Q Consensus 340 D~a~~ 344 (547)
||+..
T Consensus 273 D~a~~ 277 (377)
T PRK04965 273 DCAEI 277 (377)
T ss_pred ecEeE
Confidence 99975
No 9
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.4e-37 Score=347.78 Aligned_cols=271 Identities=22% Similarity=0.354 Sum_probs=221.7
Q ss_pred CCeEEEECCchHHHHHHHhcCC----CCCeEEEEcCCCCCccCC-ChhhhhccccCccccchhHHHHHHhCCCcEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDV----SSYDVQVVSPQNYFAFTP-LLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEA 102 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~----~g~~Vtlid~~~~~~~~p-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 102 (547)
+++|||||+|+||+++|..|++ .+++||||++++++.|.+ .++.+..+. ..+++......+++..+ ++++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~~~~~~g--I~~~~g 79 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGFYEKHG--IKVLVG 79 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHHHHHhCC--CEEEcC
Confidence 4589999999999999999863 468999999999988865 455555443 44555666667778777 666655
Q ss_pred -EEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccc-cccccCCHHHHHHHHHHHHHHHHHccCC
Q 041537 103 -EAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLE-NCHFLKELEDAQKIRRTVTDCFEKAVLP 180 (547)
Q Consensus 103 -~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e-~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 180 (547)
+|+.||++.+.|.+.+ |. .++||+||||||+.|..|++||.+. +++.+++++++.+++..+.
T Consensus 80 ~~V~~Id~~~~~V~~~~----G~---~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~--------- 143 (847)
T PRK14989 80 ERAITINRQEKVIHSSA----GR---TVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACAR--------- 143 (847)
T ss_pred CEEEEEeCCCcEEEECC----Cc---EEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHh---------
Confidence 6999999999888765 44 8999999999999999999999864 5678899999998876642
Q ss_pred CCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC-cccHHHHHHHHHHHHhCC
Q 041537 181 GLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN-SFDERISSFAEKKFQRDG 259 (547)
Q Consensus 181 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-~~~~~~~~~~~~~l~~~G 259 (547)
..++++|||||++|+|+|..|.++ +.+|+++++.+++++ .+++...+.+.+.|+++|
T Consensus 144 --------~~k~vvVIGgG~iGlE~A~~L~~~--------------G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~G 201 (847)
T PRK14989 144 --------RSKRGAVVGGGLLGLEAAGALKNL--------------GVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMG 201 (847)
T ss_pred --------cCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEeccccchhhhcCHHHHHHHHHHHHHCC
Confidence 345999999999999999999986 689999999999998 589999999999999999
Q ss_pred cEEEcCceEEEEeCC---eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccEEeCCCCCcCCCCC
Q 041537 260 IEVLTECRVVNVSDK---EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATNEWLRVKECEN 334 (547)
Q Consensus 260 V~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~ 334 (547)
|++++++.++++.++ ........+|+. +++|+||||+|++++ . .|+.+.++ +.+|+|.||+++|| +.|+
T Consensus 202 V~v~~~~~v~~I~~~~~~~~~~v~~~dG~~--i~~D~Vv~A~G~rPn--~-~L~~~~Gl~~~~~G~I~VD~~l~T-s~p~ 275 (847)
T PRK14989 202 VRVHTSKNTLEIVQEGVEARKTMRFADGSE--LEVDFIVFSTGIRPQ--D-KLATQCGLAVAPRGGIVINDSCQT-SDPD 275 (847)
T ss_pred CEEEcCCeEEEEEecCCCceEEEEECCCCE--EEcCEEEECCCcccC--c-hHHhhcCccCCCCCcEEECCCCcC-CCCC
Confidence 999999999999642 122122234775 999999999996544 4 46666665 67789999999999 8999
Q ss_pred EEEeCccCccC
Q 041537 335 VYALGDCATID 345 (547)
Q Consensus 335 VfaiGD~a~~~ 345 (547)
|||+|||+...
T Consensus 276 IYAiGD~a~~~ 286 (847)
T PRK14989 276 IYAIGECASWN 286 (847)
T ss_pred EEEeecceeEc
Confidence 99999999753
No 10
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=3.2e-37 Score=345.56 Aligned_cols=269 Identities=20% Similarity=0.391 Sum_probs=224.2
Q ss_pred EEEECCchHHHHHHHhcCC---CCCeEEEEcCCCCCccC-CChhhhhccccCccccchhHHHHHHhCCCcEEEEE-EEEE
Q 041537 31 VVLLGTGWAGISFLKDLDV---SSYDVQVVSPQNYFAFT-PLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWE-AEAI 105 (547)
Q Consensus 31 VvIIGgG~aGl~aA~~L~~---~g~~Vtlid~~~~~~~~-p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~ 105 (547)
|||||||+||+++|..|++ .+++|||||+++++.|. +.++.+..|..+.+++..+..+++++.+ ++++. .+|+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~g--v~~~~g~~V~ 78 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHG--ITLYTGETVI 78 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCC--CEEEcCCeEE
Confidence 6999999999999998863 56899999999998775 4577788877777777777788888887 66665 4899
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCCCCH
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 184 (547)
.||++++.|.+.+ |. ++.||+||||||+.|+.|++||.+ ++++.+++++++..+++.+.
T Consensus 79 ~Id~~~k~V~~~~----g~---~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~------------- 138 (785)
T TIGR02374 79 QIDTDQKQVITDA----GR---TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQ------------- 138 (785)
T ss_pred EEECCCCEEEECC----Cc---EeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh-------------
Confidence 9999999998876 44 899999999999999999999986 46788899999988877542
Q ss_pred HHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC-cccHHHHHHHHHHHHhCCcEEE
Q 041537 185 EERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN-SFDERISSFAEKKFQRDGIEVL 263 (547)
Q Consensus 185 ~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-~~~~~~~~~~~~~l~~~GV~v~ 263 (547)
..++++|||||++|+|+|..|.++ +.+|+++++.+++++ .+++...+.+.+.|+++||+++
T Consensus 139 ----~~k~vvVVGgG~~GlE~A~~L~~~--------------G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~ 200 (785)
T TIGR02374 139 ----RFKKAAVIGGGLLGLEAAVGLQNL--------------GMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFL 200 (785)
T ss_pred ----cCCeEEEECCCHHHHHHHHHHHhc--------------CCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEE
Confidence 345999999999999999999986 689999999999987 4899999999999999999999
Q ss_pred cCceEEEEeCCe-EEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCcCCCCCEEEeCccC
Q 041537 264 TECRVVNVSDKE-ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALGDCA 342 (547)
Q Consensus 264 ~~~~V~~v~~~~-v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a 342 (547)
+++.++++.++. +......+|+. +++|+|||++|++++. .|..++++.-+|+|.||+++|| +.|+|||+|||+
T Consensus 201 ~~~~v~~i~~~~~~~~v~~~dG~~--i~~D~Vi~a~G~~Pn~---~la~~~gl~~~ggI~Vd~~~~T-s~p~IyA~GD~a 274 (785)
T TIGR02374 201 LEKDTVEIVGATKADRIRFKDGSS--LEADLIVMAAGIRPND---ELAVSAGIKVNRGIIVNDSMQT-SDPDIYAVGECA 274 (785)
T ss_pred eCCceEEEEcCCceEEEEECCCCE--EEcCEEEECCCCCcCc---HHHHhcCCccCCCEEECCCccc-CCCCEEEeeecc
Confidence 999999997543 22112234765 9999999999975544 4666677754477999999999 899999999999
Q ss_pred ccC
Q 041537 343 TID 345 (547)
Q Consensus 343 ~~~ 345 (547)
..+
T Consensus 275 ~~~ 277 (785)
T TIGR02374 275 EHN 277 (785)
T ss_pred eeC
Confidence 753
No 11
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.7e-36 Score=314.94 Aligned_cols=269 Identities=25% Similarity=0.375 Sum_probs=203.6
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhh---------------------cc------ccC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVT---------------------CG------TVE 78 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~---------------------~g------~~~ 78 (547)
+..+|+||||||+||..+|.++++.|.+|.|||+...++++.+...+. .| ..+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 356899999999999999999999999999999997665543211110 00 011
Q ss_pred ccccc-----------hhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCC
Q 041537 79 ARSIA-----------EPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGT 147 (547)
Q Consensus 79 ~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~i 147 (547)
..++. ..+..+++..+ ++++.++...+| .++|.+... +.+.+++|++||||||+|..|++
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~--V~vi~G~a~f~~--~~~v~V~~~-----~~~~~~a~~iiIATGS~p~~~~~ 152 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNG--VDVIRGEARFVD--PHTVEVTGE-----DKETITADNIIIATGSRPRIPPG 152 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCC--CEEEEEEEEECC--CCEEEEcCC-----CceEEEeCEEEEcCCCCCcCCCC
Confidence 11111 12344455555 888999999998 457776641 23499999999999999999999
Q ss_pred CCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCC
Q 041537 148 PGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDL 227 (547)
Q Consensus 148 pG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~ 227 (547)
||+++.. .+.+ +++.. +..+| ++++|||||++|+|+|..++.+ +
T Consensus 153 ~~~~~~~-~~~s-~~~l~-------------~~~lP-------~~lvIiGgG~IGlE~a~~~~~L--------------G 196 (454)
T COG1249 153 PGIDGAR-ILDS-SDALF-------------LLELP-------KSLVIVGGGYIGLEFASVFAAL--------------G 196 (454)
T ss_pred CCCCCCe-EEec-hhhcc-------------cccCC-------CEEEEECCCHHHHHHHHHHHHc--------------C
Confidence 8876432 1111 11111 11123 3999999999999999999998 7
Q ss_pred ceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCe--EEEEeccCCeEEEEeeceEEEccCCCCCcc
Q 041537 228 VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKE--ITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305 (547)
Q Consensus 228 ~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~ 305 (547)
++||++++.+++||.+|+++++.+.+.|++.|+++++++++++++.+. +.+.. .+|+..++++|.+++|+| +.|+
T Consensus 197 ~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~-~~g~~~~~~ad~vLvAiG--R~Pn 273 (454)
T COG1249 197 SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTL-EDGEGGTIEADAVLVAIG--RKPN 273 (454)
T ss_pred CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEE-ecCCCCEEEeeEEEEccC--CccC
Confidence 999999999999999999999999999999999999999999997532 33332 224422489999999999 8898
Q ss_pred hHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 306 IKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 306 ~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
++.| +++.|+ +.+|+|.||.+++| +.|+|||+|||+.
T Consensus 274 ~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~ 313 (454)
T COG1249 274 TDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIG 313 (454)
T ss_pred CCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCC
Confidence 8777 777787 67899999955555 8999999999976
No 12
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.2e-35 Score=315.00 Aligned_cols=261 Identities=21% Similarity=0.358 Sum_probs=195.0
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhc--------------------c------ccCc--
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTC--------------------G------TVEA-- 79 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~--------------------g------~~~~-- 79 (547)
.+||+||||||||++||..+++.|++|+|||+. .++++.....+.+ | ..+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 479999999999999999999999999999984 4555432111100 0 0000
Q ss_pred ---------cccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCc
Q 041537 80 ---------RSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGV 150 (547)
Q Consensus 80 ---------~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~ 150 (547)
..+...++..+++.+ ++++.+++..+|++ ++.+.. ++. .+.||+||||||++|..|++||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~g--V~~~~g~~~~v~~~--~v~v~~---~g~---~~~~d~lIiATGs~p~~p~i~G~ 150 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAG--VELLEGRARLVGPN--TVEVLQ---DGT---TYTAKKILIAVGGRPQKPNLPGH 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--cEEEEEEEEEecCC--EEEEec---CCe---EEEcCEEEEecCCcCCCCCCCCc
Confidence 012223455566666 78889999999876 444332 133 79999999999999999999986
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceE
Q 041537 151 LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRI 230 (547)
Q Consensus 151 ~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V 230 (547)
+ .. .+.+++..+ + ...++++|||+|++|+|+|..+..+ +.+|
T Consensus 151 ~-~~---~~~~~~~~l-------------~-------~~~~~vvVIGgG~~g~E~A~~l~~~--------------G~~V 192 (446)
T TIGR01424 151 E-LG---ITSNEAFHL-------------P-------TLPKSILILGGGYIAVEFAGIWRGL--------------GVQV 192 (446)
T ss_pred c-ce---echHHhhcc-------------c-------ccCCeEEEECCcHHHHHHHHHHHHc--------------CCeE
Confidence 4 21 122222211 1 1235999999999999999999875 6899
Q ss_pred EEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCcchHH
Q 041537 231 TLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKD 308 (547)
Q Consensus 231 ~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~ 308 (547)
+++++++.+++.+++++.+.+.+.|++.||+++++++|++++. +++.+.. .+|+. +++|.||||+|. .|+++.
T Consensus 193 tli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~viva~G~--~pn~~~ 267 (446)
T TIGR01424 193 TLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTL-SHGEE--IVADVVLFATGR--SPNTKG 267 (446)
T ss_pred EEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEE-cCCcE--eecCEEEEeeCC--CcCCCc
Confidence 9999999999999999999999999999999999999999963 4444443 23654 999999999995 555543
Q ss_pred H-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 309 F-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 309 l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 268 l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 304 (446)
T TIGR01424 268 LGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTD 304 (446)
T ss_pred CCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCC
Confidence 3 345555 57789999999999 9999999999975
No 13
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-35 Score=315.13 Aligned_cols=269 Identities=23% Similarity=0.392 Sum_probs=194.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhc--------------------c------ccCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTC--------------------G------TVEAR 80 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~--------------------g------~~~~~ 80 (547)
..+||||||||+||++||..|++.|++|+|||++. ++++.+.....+ | ..+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999876 544322111100 0 01111
Q ss_pred ccch-----------hHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCC
Q 041537 81 SIAE-----------PVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPG 149 (547)
Q Consensus 81 ~~~~-----------~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG 149 (547)
.+.. .++.++++.+ ++++.++++.+|+....|...+ +. ..+.||+||||||++|..+ ||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~g~~~~~~~~~~~v~~~~----~~--~~~~~d~lViAtGs~p~~~--pg 151 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNK--VDIIRGEAKLVDPNTVRVMTED----GE--QTYTAKNIILATGSRPREL--PG 151 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccCCEEEEecCC----Cc--EEEEeCEEEEeCCCCCCCC--CC
Confidence 1121 2344555666 7889999999887644443322 21 3899999999999998653 56
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCce
Q 041537 150 VLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR 229 (547)
Q Consensus 150 ~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~ 229 (547)
+......+.+.+++.++. ...++++|||||++|+|+|..|.++ +.+
T Consensus 152 ~~~~~~~v~~~~~~~~~~--------------------~~~~~vvVvGgG~~g~E~A~~l~~~--------------g~~ 197 (462)
T PRK06416 152 IEIDGRVIWTSDEALNLD--------------------EVPKSLVVIGGGYIGVEFASAYASL--------------GAE 197 (462)
T ss_pred CCCCCCeEEcchHhhCcc--------------------ccCCeEEEECCCHHHHHHHHHHHHc--------------CCe
Confidence 542222233444433221 1235999999999999999998875 689
Q ss_pred EEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--eEEEEeccCCeEEEEeeceEEEccCCCCCcchH
Q 041537 230 ITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIK 307 (547)
Q Consensus 230 V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~ 307 (547)
|+++++.++++|.+++++.+.+.+.|+++||+++++++|++++.+ .+.+....+|+..++++|.||||+|. .|+..
T Consensus 198 Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~--~p~~~ 275 (462)
T PRK06416 198 VTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR--RPNTE 275 (462)
T ss_pred EEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC--ccCCC
Confidence 999999999999999999999999999999999999999999753 45444322233345999999999995 45443
Q ss_pred HH-HHHhCC-CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 308 DF-MEQIGQ-GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 308 ~l-~~~~~~-~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
.+ ++..++ ..+|+|.||+++|+ +.|+|||+|||+.
T Consensus 276 ~l~l~~~gl~~~~g~i~vd~~~~t-~~~~VyAiGD~~~ 312 (462)
T PRK06416 276 NLGLEELGVKTDRGFIEVDEQLRT-NVPNIYAIGDIVG 312 (462)
T ss_pred CCCchhcCCeecCCEEeECCCCcc-CCCCEEEeeecCC
Confidence 33 345555 23789999999998 8999999999975
No 14
>PLN02507 glutathione reductase
Probab=100.00 E-value=3.3e-35 Score=314.31 Aligned_cols=267 Identities=18% Similarity=0.301 Sum_probs=199.4
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcC---------CCCCccCCCh----hhhh----------------ccc
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSP---------QNYFAFTPLL----PSVT----------------CGT 76 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~---------~~~~~~~p~l----~~~~----------------~g~ 76 (547)
...+||+|||||+||+.+|..+++.|.+|+|||+ ...++++.+. |.-. .|.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 4568999999999999999999999999999996 2345554322 1100 000
Q ss_pred -------cCccccch-----------hHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEcc
Q 041537 77 -------VEARSIAE-----------PVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAV 138 (547)
Q Consensus 77 -------~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAt 138 (547)
.+...+.. .++.++...+ ++++++++..+|+....|.+.+ |+ +..+.||+|||||
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~g--V~~i~g~a~~vd~~~v~V~~~~----g~-~~~~~~d~LIIAT 175 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAG--VKLYEGEGKIVGPNEVEVTQLD----GT-KLRYTAKHILIAT 175 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEEEEEEecCCEEEEEeCC----Cc-EEEEEcCEEEEec
Confidence 01111111 1223444455 8899999999998866666543 32 2368999999999
Q ss_pred CCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhh
Q 041537 139 GAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLI 218 (547)
Q Consensus 139 G~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~ 218 (547)
|++|..|++||.+ .. .+.+++..++ ...++++|||+|++|+|+|..+..+
T Consensus 176 Gs~p~~p~ipG~~-~~---~~~~~~~~l~--------------------~~~k~vvVIGgG~ig~E~A~~l~~~------ 225 (499)
T PLN02507 176 GSRAQRPNIPGKE-LA---ITSDEALSLE--------------------ELPKRAVVLGGGYIAVEFASIWRGM------ 225 (499)
T ss_pred CCCCCCCCCCCcc-ce---echHHhhhhh--------------------hcCCeEEEECCcHHHHHHHHHHHHc------
Confidence 9999999999863 21 2333433221 1134999999999999999998876
Q ss_pred hhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEE
Q 041537 219 NLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLW 296 (547)
Q Consensus 219 ~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~ 296 (547)
+.+|+++++.+++++.+++++.+.+.+.|++.||+++++++|++++. +++.+.. .+|+. +++|.|+|
T Consensus 226 --------G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~-~~g~~--i~~D~vl~ 294 (499)
T PLN02507 226 --------GATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVIT-DHGEE--FVADVVLF 294 (499)
T ss_pred --------CCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEE-CCCcE--EEcCEEEE
Confidence 68999999999999999999999999999999999999999999964 4555543 34654 99999999
Q ss_pred ccCCCCCcchHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 297 STGVGTRPAIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 297 a~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
++|. .|+...+ ++.+++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 295 a~G~--~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~ 341 (499)
T PLN02507 295 ATGR--APNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTN 341 (499)
T ss_pred eecC--CCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCC
Confidence 9995 4544333 355555 67789999999998 9999999999985
No 15
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.6e-35 Score=311.98 Aligned_cols=269 Identities=19% Similarity=0.244 Sum_probs=194.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhc--------------------c------ccCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTC--------------------G------TVEAR 80 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~--------------------g------~~~~~ 80 (547)
.++||+|||||+||+++|..|++.|.+|+|||+++.++++.+.....+ | ..+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 368999999999999999999999999999999876665432111100 0 01111
Q ss_pred ccchh-----------HHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccC-CCCC
Q 041537 81 SIAEP-----------VRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNT-FGTP 148 (547)
Q Consensus 81 ~~~~~-----------~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~-~~ip 148 (547)
.+... +..+++..+ ++++++++..+|+ ++|.+.... |+ ..++.||+||||||++|.. |.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g--V~~~~g~a~~~~~--~~v~v~~~~--g~-~~~~~~d~lViATGs~p~~~p~~~ 155 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRK--VTVVNGLGKFTGG--NTLEVTGED--GK-TTVIEFDNAIIAAGSRPIQLPFIP 155 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccC--CEEEEecCC--Cc-eEEEEcCEEEEeCCCCCCCCCCCC
Confidence 11111 223345556 8889999988875 455554311 31 2479999999999999964 4556
Q ss_pred CccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCc
Q 041537 149 GVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLV 228 (547)
Q Consensus 149 G~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~ 228 (547)
+..++. .+.+++..+. ...++++|||||++|+|+|..+.++ +.
T Consensus 156 ~~~~~v---~~~~~~~~~~--------------------~~~~~vvIiGgG~iG~E~A~~l~~~--------------G~ 198 (471)
T PRK06467 156 HDDPRI---WDSTDALELK--------------------EVPKRLLVMGGGIIGLEMGTVYHRL--------------GS 198 (471)
T ss_pred CCCCcE---EChHHhhccc--------------------cCCCeEEEECCCHHHHHHHHHHHHc--------------CC
Confidence 533332 2333333221 1235999999999999999999876 68
Q ss_pred eEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEec-cCCeEEEEeeceEEEccCCCCCcc
Q 041537 229 RITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIK-STGAVCSIPHGLVLWSTGVGTRPA 305 (547)
Q Consensus 229 ~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~-~~G~~~~i~~D~vv~a~G~~~~p~ 305 (547)
+|+++++.++++|.+++++.+.+.+.|+++ |++++++.|++++ ++.+.+... .+|+..++++|.||||+|. .|+
T Consensus 199 ~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~--~pn 275 (471)
T PRK06467 199 EVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR--VPN 275 (471)
T ss_pred CEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc--ccc
Confidence 999999999999999999999999999998 9999999999986 344444321 1232345999999999995 555
Q ss_pred hHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 306 IKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 306 ~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
++.+ +...++ +++|+|.||+++|| +.|+|||+|||+.
T Consensus 276 ~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~ 315 (471)
T PRK06467 276 GKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVG 315 (471)
T ss_pred CCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcC
Confidence 5433 445555 67899999999999 9999999999975
No 16
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.2e-35 Score=310.48 Aligned_cols=272 Identities=20% Similarity=0.336 Sum_probs=193.4
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhh--------------------ccc------cCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVT--------------------CGT------VEAR 80 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~--------------------~g~------~~~~ 80 (547)
..+||||||||+||++||..|++.|.+|+|||+. .++++....... .|. .+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 3689999999999999999999999999999986 444443211100 010 0100
Q ss_pred cc-----------chhHHHHHHhCCCcEEEEEEEEEEEECC-----CCEEEEecCCCCCCceeeeecCEEEEccCCCccC
Q 041537 81 SI-----------AEPVRNIIKKRNAEIQFWEAEAIKIDAA-----KNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNT 144 (547)
Q Consensus 81 ~~-----------~~~~~~~~~~~~~~v~~~~~~v~~id~~-----~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~ 144 (547)
.+ ...+..++++.+ +++++++++.+|++ .+++.+.... |. ..++.||+||||||++|+.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~g--v~~~~g~a~~i~~~~~~~~~~~~~v~~~~--g~-~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGK--IDVFHGIGRILGPSIFSPMPGTVSVETET--GE-NEMIIPENLLIATGSRPVE 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEeCCCCCcCCceEEEEEeCC--Cc-eEEEEcCEEEEeCCCCCCC
Confidence 11 112234455555 88999999999987 2344443211 31 2379999999999999865
Q ss_pred CCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCC
Q 041537 145 FGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTV 224 (547)
Q Consensus 145 ~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~ 224 (547)
+ |+.......+.+.+++..+. ...++++|||||++|+|+|..|.++
T Consensus 157 ~--p~~~~~~~~~~~~~~~~~~~--------------------~~~~~vvIIGgG~~G~E~A~~l~~~------------ 202 (472)
T PRK05976 157 L--PGLPFDGEYVISSDEALSLE--------------------TLPKSLVIVGGGVIGLEWASMLADF------------ 202 (472)
T ss_pred C--CCCCCCCceEEcchHhhCcc--------------------ccCCEEEEECCCHHHHHHHHHHHHc------------
Confidence 4 33321111122333332211 1134999999999999999999876
Q ss_pred CCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe---CCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 225 KDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS---DKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 225 ~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~---~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
+.+|+++++.++++|.+++++.+.+.+.|+++||+++++++|++++ ++++.+....+|+..++++|.+|||+|.
T Consensus 203 --g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~- 279 (472)
T PRK05976 203 --GVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR- 279 (472)
T ss_pred --CCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCC-
Confidence 6899999999999999999999999999999999999999999997 4555444333465446999999999995
Q ss_pred CCcchHHH-HHHhCC-CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 302 TRPAIKDF-MEQIGQ-GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 302 ~~p~~~~l-~~~~~~-~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
.|++..+ ++.+++ ..+|+|.||+++++ +.|+|||+|||+.
T Consensus 280 -~p~~~~l~l~~~~~~~~~g~i~Vd~~l~t-s~~~IyAiGD~~~ 321 (472)
T PRK05976 280 -RPNTEGIGLENTDIDVEGGFIQIDDFCQT-KERHIYAIGDVIG 321 (472)
T ss_pred -ccCCCCCCchhcCceecCCEEEECCCccc-CCCCEEEeeecCC
Confidence 4544333 334455 35688999999998 7999999999975
No 17
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.6e-34 Score=308.06 Aligned_cols=266 Identities=21% Similarity=0.345 Sum_probs=192.3
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhh--------------------hcc-------ccC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSV--------------------TCG-------TVE 78 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~--------------------~~g-------~~~ 78 (547)
+.++|||||||||||++||.+|++.|++|+|||+.. ++++.+.... ..| ..+
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 345899999999999999999999999999999863 3333221111 011 111
Q ss_pred ccccc-----------hhHHHHHHhC-CCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 79 ARSIA-----------EPVRNIIKKR-NAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 79 ~~~~~-----------~~~~~~~~~~-~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
...+. ..+...+++. + ++++.++...++ .++|.+. +. ++.||+||||||++|+.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~v~~g~~~~~~--~~~v~v~-----~~---~~~~d~lViATGs~p~~p~ 149 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEG--VDVFRGHARFES--PNTVRVG-----GE---TLRAKRIFINTGARAAIPP 149 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCC--cEEEEEEEEEcc--CCEEEEC-----cE---EEEeCEEEEcCCCCCCCCC
Confidence 11111 1233344444 5 777788776655 5677663 32 7999999999999999999
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCC
Q 041537 147 TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKD 226 (547)
Q Consensus 147 ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~ 226 (547)
+||.++.. +.+..+...+ . ...++++|||+|++|+|+|..|.++
T Consensus 150 i~G~~~~~--~~~~~~~~~~-------------~-------~~~~~vvVIGgG~~g~E~A~~l~~~-------------- 193 (463)
T PRK06370 150 IPGLDEVG--YLTNETIFSL-------------D-------ELPEHLVIIGGGYIGLEFAQMFRRF-------------- 193 (463)
T ss_pred CCCCCcCc--eEcchHhhCc-------------c-------ccCCEEEEECCCHHHHHHHHHHHHc--------------
Confidence 99975321 1122221110 0 1235999999999999999999876
Q ss_pred CceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--eEEEEeccCCeEEEEeeceEEEccCCCCCc
Q 041537 227 LVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVGTRP 304 (547)
Q Consensus 227 ~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p 304 (547)
+.+|+++++.+++++.+++++.+.+.+.|++.||+++++++|.+++.+ .+.+....++...++++|.||||+|. .|
T Consensus 194 G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~--~p 271 (463)
T PRK06370 194 GSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR--VP 271 (463)
T ss_pred CCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC--Cc
Confidence 689999999999999999999999999999999999999999999753 33322111122224999999999995 55
Q ss_pred chHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 305 AIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 305 ~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+.+.+ ++..++ +.+|+|.||++||| +.|+|||+|||+.
T Consensus 272 n~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~ 312 (463)
T PRK06370 272 NTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNG 312 (463)
T ss_pred CCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCC
Confidence 55434 445555 67889999999999 9999999999975
No 18
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=8.1e-35 Score=308.32 Aligned_cols=260 Identities=20% Similarity=0.296 Sum_probs=191.2
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhc--------------------c-------ccCcc
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTC--------------------G-------TVEAR 80 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~--------------------g-------~~~~~ 80 (547)
.+||+|||||+||++||..|++.|.+|+|||+. .++++.+.....+ | ..+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 479999999999999999999999999999985 3554332111100 0 01111
Q ss_pred c-----------cchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC-CCC
Q 041537 81 S-----------IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF-GTP 148 (547)
Q Consensus 81 ~-----------~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~-~ip 148 (547)
. +...+...++..+ ++++.++....+ .++|.+. +. .+.||+||||||++|+.| ++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~~g~~~~~~--~~~v~v~-----~~---~~~~d~vIiAtGs~p~~p~~i~ 148 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNK--VDVIFGHARFTK--DGTVEVN-----GR---DYTAPHILIATGGKPSFPENIP 148 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEcc--CCEEEEC-----CE---EEEeCEEEEecCCCCCCCCCCC
Confidence 1 1112344455566 777888876654 4567663 33 799999999999999988 899
Q ss_pred CccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCc
Q 041537 149 GVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLV 228 (547)
Q Consensus 149 G~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~ 228 (547)
|.+ .. .+.++... +. ...++++|||||++|+|+|..|..+ +.
T Consensus 149 g~~-~~---~~~~~~~~-------------~~-------~~~~~vvIIGgG~iG~E~A~~l~~~--------------g~ 190 (450)
T TIGR01421 149 GAE-LG---TDSDGFFA-------------LE-------ELPKRVVIVGAGYIAVELAGVLHGL--------------GS 190 (450)
T ss_pred CCc-ee---EcHHHhhC-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHc--------------CC
Confidence 863 21 12222111 11 1135999999999999999999976 68
Q ss_pred eEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--e-EEEEeccCCeEEEEeeceEEEccCCCCCcc
Q 041537 229 RITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK--E-ITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305 (547)
Q Consensus 229 ~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~--~-v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~ 305 (547)
+|+++++++++++.+++++.+.+.+.|+++||++++++.|++++.+ + +.+.. ++|+ .++++|.||||+|. .|+
T Consensus 191 ~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~-~~g~-~~i~~D~vi~a~G~--~pn 266 (450)
T TIGR01421 191 ETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHF-EDGK-SIDDVDELIWAIGR--KPN 266 (450)
T ss_pred cEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEE-CCCc-EEEEcCEEEEeeCC--CcC
Confidence 9999999999999999999999999999999999999999999642 2 33332 2352 24999999999995 455
Q ss_pred hHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 306 IKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 306 ~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 267 ~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~ 306 (450)
T TIGR01421 267 TKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVG 306 (450)
T ss_pred cccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCC
Confidence 5333 345555 67889999999998 8999999999985
No 19
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.6e-34 Score=308.28 Aligned_cols=268 Identities=19% Similarity=0.262 Sum_probs=196.3
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhc-----------------------c---ccCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTC-----------------------G---TVEAR 80 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~-----------------------g---~~~~~ 80 (547)
.+++|+|||||+||+++|.+|++.|.+|+|||+++.++++.......+ + ..+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 458999999999999999999999999999999766655432111000 0 00011
Q ss_pred ccc-----------hhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCC
Q 041537 81 SIA-----------EPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPG 149 (547)
Q Consensus 81 ~~~-----------~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG 149 (547)
++. ..+..++.+.+ ++++.+++..++.....|...+ |. ...+.||+||||||+.|..|++++
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~~~~v~~~~----g~-~~~~~~d~lviATGs~p~~p~~~~ 156 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNR--VDLIQGRARFVDPHTVEVECPD----GE-VETLTADKIVIATGSRPYRPPDVD 156 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEecCCEEEEEeCC----Cc-eEEEEcCEEEEcCCCCCCCCCCCC
Confidence 111 12334455566 7888999988886544444332 22 237999999999999998887776
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCce
Q 041537 150 VLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR 229 (547)
Q Consensus 150 ~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~ 229 (547)
.... .+.+.++...+. ...++++|||+|++|+|+|..+..+ +.+
T Consensus 157 ~~~~--~v~~~~~~~~~~--------------------~~~~~v~IiGgG~~g~E~A~~l~~~--------------g~~ 200 (461)
T PRK05249 157 FDHP--RIYDSDSILSLD--------------------HLPRSLIIYGAGVIGCEYASIFAAL--------------GVK 200 (461)
T ss_pred CCCC--eEEcHHHhhchh--------------------hcCCeEEEECCCHHHHHHHHHHHHc--------------CCe
Confidence 5321 122222211100 1235999999999999999999886 689
Q ss_pred EEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCCCCCcchH
Q 041537 230 ITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIK 307 (547)
Q Consensus 230 V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~ 307 (547)
|+++++++++++.+++++.+.+.+.|++.||++++++.|++++ ++.+.+.. .+|+. +++|.|++|+|. .|+++
T Consensus 201 Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~vi~a~G~--~p~~~ 275 (461)
T PRK05249 201 VTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHL-KSGKK--IKADCLLYANGR--TGNTD 275 (461)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEE-CCCCE--EEeCEEEEeecC--Ccccc
Confidence 9999999999999999999999999999999999999999997 44555543 34654 999999999995 55553
Q ss_pred HH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 308 DF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 308 ~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
.+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 276 ~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~ 313 (461)
T PRK05249 276 GLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIG 313 (461)
T ss_pred CCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCC
Confidence 33 344555 57789999999998 8999999999975
No 20
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-34 Score=306.53 Aligned_cols=267 Identities=20% Similarity=0.335 Sum_probs=193.3
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC-CccCCChhhhh-------c--cccCcc-------ccchhHH--
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY-FAFTPLLPSVT-------C--GTVEAR-------SIAEPVR-- 87 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~-~~~~p~l~~~~-------~--g~~~~~-------~~~~~~~-- 87 (547)
+.+||||||||+||++||.+|++.|.+|+|||+.+. ++++....... . ...+.. .+...++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999999999864 33332111110 0 000100 0111111
Q ss_pred ---HHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHH
Q 041537 88 ---NIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQ 164 (547)
Q Consensus 88 ---~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~ 164 (547)
.+.+..+ ++++++++..+|.....|...+ +. .++.||+||||||++|..|++||+++... +.+..+..
T Consensus 82 ~~~~~~~~~g--v~~~~g~~~~i~~~~~~v~~~~----g~--~~~~~d~lviATGs~p~~p~i~G~~~~~~-v~~~~~~~ 152 (441)
T PRK08010 82 NFHNLADMPN--IDVIDGQAEFINNHSLRVHRPE----GN--LEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDSTGLL 152 (441)
T ss_pred HHHHHhhcCC--cEEEEEEEEEecCCEEEEEeCC----Ce--EEEEeCEEEEcCCCcCCCCCCCCccCCCC-EEChhHhh
Confidence 1122224 8889999999987644454432 21 36999999999999999999999854221 11221111
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCccc
Q 041537 165 KIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFD 244 (547)
Q Consensus 165 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~ 244 (547)
. +. ...++++|||+|++|+|+|..|.++ +.+|+++++++.++|.++
T Consensus 153 ~-------------~~-------~~~~~v~ViGgG~~g~E~A~~l~~~--------------g~~Vtli~~~~~~l~~~~ 198 (441)
T PRK08010 153 N-------------LK-------ELPGHLGILGGGYIGVEFASMFANF--------------GSKVTILEAASLFLPRED 198 (441)
T ss_pred c-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCCcC
Confidence 1 00 1234999999999999999999976 689999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHH-HHHhCC--CCCc
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDF-MEQIGQ--GKRR 319 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l-~~~~~~--~~~g 319 (547)
+++.+.+.+.|++.||++++++.|++++. +.+.+.. .+++ +++|.|++|+|. .|+...+ ...+++ +.+|
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~-~~g~---i~~D~vl~a~G~--~pn~~~l~~~~~gl~~~~~G 272 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHS-EHAQ---LAVDALLIASGR--QPATASLHPENAGIAVNERG 272 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE-cCCe---EEeCEEEEeecC--CcCCCCcCchhcCcEECCCC
Confidence 99999999999999999999999999974 3455543 2243 899999999995 4544333 345555 5678
Q ss_pred cEEeCCCCCcCCCCCEEEeCccCc
Q 041537 320 VLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 320 ~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+|.||+++|| +.|+|||+|||+.
T Consensus 273 ~i~vd~~~~T-s~~~IyA~GD~~~ 295 (441)
T PRK08010 273 AIVVDKYLHT-TADNIWAMGDVTG 295 (441)
T ss_pred cEEECCCccc-CCCCEEEeeecCC
Confidence 9999999999 8999999999986
No 21
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2e-34 Score=306.41 Aligned_cols=259 Identities=20% Similarity=0.318 Sum_probs=193.2
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhh-------------------h--ccc------cCcc
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSV-------------------T--CGT------VEAR 80 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~-------------------~--~g~------~~~~ 80 (547)
.+||+||||||||++||..|++.|++|+|||+. .++++.+.... . .|. .+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 579999999999999999999999999999986 44443211100 0 000 1111
Q ss_pred c-----------cchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCC
Q 041537 81 S-----------IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPG 149 (547)
Q Consensus 81 ~-----------~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG 149 (547)
. +...++..+.+.+ ++++.++++.+|+ ++|.+ + +. ++.||+||||||++|+.|++||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~~g~~~~v~~--~~v~~-~----g~---~~~~d~lViATGs~p~~p~i~g 150 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNG--VDLIEGFARFVDA--HTVEV-N----GE---RYTADHILIATGGRPSIPDIPG 150 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccC--CEEEE-C----CE---EEEeCEEEEecCCCCCCCCCCC
Confidence 1 1112334455566 7888999998875 47776 3 43 7999999999999999999998
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCce
Q 041537 150 VLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR 229 (547)
Q Consensus 150 ~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~ 229 (547)
.+ ++. +.++... +. ...++++|||+|++|+|+|..|.++ +.+
T Consensus 151 ~~-~~~---~~~~~~~-------------~~-------~~~~~vvViGgG~~g~E~A~~l~~~--------------g~~ 192 (450)
T PRK06116 151 AE-YGI---TSDGFFA-------------LE-------ELPKRVAVVGAGYIAVEFAGVLNGL--------------GSE 192 (450)
T ss_pred cc-eeE---chhHhhC-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHc--------------CCe
Confidence 63 221 1111111 10 1235999999999999999999876 689
Q ss_pred EEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--Ce-EEEEeccCCeEEEEeeceEEEccCCCCCcch
Q 041537 230 ITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KE-ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAI 306 (547)
Q Consensus 230 V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~ 306 (547)
|+++++++.+++.+++++.+.+.+.|++.||+++++++|++++. ++ +.+.. .+|+. +++|.||+|+|. .|++
T Consensus 193 Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~-~~g~~--i~~D~Vv~a~G~--~p~~ 267 (450)
T PRK06116 193 THLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTL-EDGET--LTVDCLIWAIGR--EPNT 267 (450)
T ss_pred EEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEE-cCCcE--EEeCEEEEeeCC--CcCC
Confidence 99999999999999999999999999999999999999999964 33 44443 34654 999999999995 5555
Q ss_pred HHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 307 KDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 307 ~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
..+ ++.+++ +.+|+|.||+++|| ++|+|||+|||+.
T Consensus 268 ~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 306 (450)
T PRK06116 268 DGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTG 306 (450)
T ss_pred CCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCC
Confidence 433 344554 67889999999998 9999999999975
No 22
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-34 Score=305.38 Aligned_cols=269 Identities=20% Similarity=0.330 Sum_probs=187.1
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhh---------------hc-------cc-----cCc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSV---------------TC-------GT-----VEA 79 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~---------------~~-------g~-----~~~ 79 (547)
+++||+||||||||++||..+++.|.+|+|||++..++++.+.... .. |. .+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 3589999999999999999999999999999986656554321110 00 00 000
Q ss_pred cccc-----------hhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCC
Q 041537 80 RSIA-----------EPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTP 148 (547)
Q Consensus 80 ~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ip 148 (547)
..+. ..++.+++..+ +++++++....+.. ++.+.... |. +.++.||+||||||++|. ++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~a~~~~~~--~v~v~~~~--g~-~~~~~~d~lVIATGs~p~--~ip 152 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNK--VDWIKGWGRLDGVG--KVVVKAED--GS-ETQLEAKDIVIATGSEPT--PLP 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccCC--EEEEEcCC--Cc-eEEEEeCEEEEeCCCCCC--CCC
Confidence 0000 11233344445 78888887555433 44443211 22 247999999999999884 467
Q ss_pred Ccc-ccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCC
Q 041537 149 GVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDL 227 (547)
Q Consensus 149 G~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~ 227 (547)
|+. ++...+ +.+++.. +. ...++++|||+|++|+|+|..+.++ +
T Consensus 153 g~~~~~~~~~-~~~~~~~-------------~~-------~~~~~vvIIGgG~ig~E~A~~l~~~--------------G 197 (466)
T PRK06115 153 GVTIDNQRII-DSTGALS-------------LP-------EVPKHLVVIGAGVIGLELGSVWRRL--------------G 197 (466)
T ss_pred CCCCCCCeEE-CHHHHhC-------------Cc-------cCCCeEEEECCCHHHHHHHHHHHHc--------------C
Confidence 753 222222 2222111 11 1235999999999999999998876 6
Q ss_pred ceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEE--eccCCeEEEEeeceEEEccCCCCC
Q 041537 228 VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMK--IKSTGAVCSIPHGLVLWSTGVGTR 303 (547)
Q Consensus 228 ~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~--~~~~G~~~~i~~D~vv~a~G~~~~ 303 (547)
.+|+++++.++++|.+++++.+.+.+.|++.||+++++++|+++++ +.+.+. ...+|+..++++|.|+||+|. .
T Consensus 198 ~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~--~ 275 (466)
T PRK06115 198 AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR--R 275 (466)
T ss_pred CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC--c
Confidence 8999999999999999999999999999999999999999999974 344432 212343345999999999995 5
Q ss_pred cchHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 304 PAIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 304 p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
|+++.+ ++..++ +.+| +.||+++|| +.|+|||+|||+.
T Consensus 276 pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~ 316 (466)
T PRK06115 276 PYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTS 316 (466)
T ss_pred cccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCC
Confidence 665444 344454 4455 779999998 9999999999985
No 23
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=3.6e-34 Score=305.53 Aligned_cols=265 Identities=23% Similarity=0.312 Sum_probs=194.2
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhh---------------hhc----c------ccCcc---
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPS---------------VTC----G------TVEAR--- 80 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~---------------~~~----g------~~~~~--- 80 (547)
+|||||||||||+++|..|++.|.+|+|||+.. ++++.+... ... | ..+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 589999999999999999999999999999875 555432111 000 0 00111
Q ss_pred ----ccch-----hHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCcc
Q 041537 81 ----SIAE-----PVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVL 151 (547)
Q Consensus 81 ----~~~~-----~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~ 151 (547)
++.. .+..++++.+ ++++.+++..+| .++|.+.+ +. ..+.||+||||||+.|..|++||.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~g--v~~~~g~~~~~~--~~~v~v~~----g~--~~~~~~~lIiATGs~p~~p~i~G~~ 149 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYG--VDYLRGRARFKD--PKTVKVDL----GR--EVRGAKRFLIATGARPAIPPIPGLK 149 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCC--cEEEEEEEEEcc--CCEEEEcC----Ce--EEEEeCEEEEcCCCCCCCCCCCCcc
Confidence 1111 1334556666 788899988776 45777753 22 3689999999999999999999975
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEE
Q 041537 152 ENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRIT 231 (547)
Q Consensus 152 e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~ 231 (547)
+.. +.+.+++..+ . ...++++|||+|++|+|+|..|.++ +.+|+
T Consensus 150 ~~~--~~~~~~~~~~-------------~-------~~~~~vvIIGgG~~g~E~A~~l~~~--------------g~~Vt 193 (463)
T TIGR02053 150 EAG--YLTSEEALAL-------------D-------RIPESLAVIGGGAIGVELAQAFARL--------------GSEVT 193 (463)
T ss_pred cCc--eECchhhhCc-------------c-------cCCCeEEEECCCHHHHHHHHHHHHc--------------CCcEE
Confidence 431 2222222110 0 1235999999999999999999876 68999
Q ss_pred EEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHH
Q 041537 232 LIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDF 309 (547)
Q Consensus 232 lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l 309 (547)
++++.++++|.+++++.+.+.+.|++.||+++++++|++++.+ .+.+....++...++++|.||+|+|. .|+...|
T Consensus 194 li~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~--~p~~~~l 271 (463)
T TIGR02053 194 ILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR--RPNTDGL 271 (463)
T ss_pred EEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC--CcCCCCC
Confidence 9999999999999999999999999999999999999999643 33332211122235999999999995 5555434
Q ss_pred -HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 310 -MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 310 -~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
++..++ +++|+|.||+++|| +.|+|||+|||+.
T Consensus 272 ~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~ 307 (463)
T TIGR02053 272 GLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTG 307 (463)
T ss_pred CccccCCEECCCCcEeECCCccC-CCCCEEEeeecCC
Confidence 444554 67889999999999 9999999999985
No 24
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.2e-34 Score=302.87 Aligned_cols=268 Identities=18% Similarity=0.325 Sum_probs=195.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC-CccCCChhhhhccc---------cCccccch-----------h
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY-FAFTPLLPSVTCGT---------VEARSIAE-----------P 85 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~-~~~~p~l~~~~~g~---------~~~~~~~~-----------~ 85 (547)
+.+|||||||||||++||..|++.|++|+|||+++. ++++.+...+.+.. .+..++.. .
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK 81 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999864 34432211111100 01111111 1
Q ss_pred HHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHH
Q 041537 86 VRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQK 165 (547)
Q Consensus 86 ~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~ 165 (547)
..+.+.+.+ ++++.+++..++ +++|.+.. +....++.||+||||||++|+.|++||+.+... +.+..+...
T Consensus 82 ~~~~~~~~g--V~~~~g~~~~~~--~~~v~v~~----~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~-v~~~~~~~~ 152 (438)
T PRK07251 82 NYAMLAGSG--VDLYDAEAHFVS--NKVIEVQA----GDEKIELTAETIVINTGAVSNVLPIPGLADSKH-VYDSTGIQS 152 (438)
T ss_pred HHHHHHhCC--CEEEEEEEEEcc--CCEEEEee----CCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCc-EEchHHHhc
Confidence 223455555 788888887764 56777654 111247999999999999999999999754321 112222211
Q ss_pred HHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccH
Q 041537 166 IRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDE 245 (547)
Q Consensus 166 l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~ 245 (547)
+ . ...++++|||||++|+|+|..++++ +.+|+++++.+++++.+++
T Consensus 153 ~-------------~-------~~~~~vvIIGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~l~~~~~ 198 (438)
T PRK07251 153 L-------------E-------TLPERLGIIGGGNIGLEFAGLYNKL--------------GSKVTVLDAASTILPREEP 198 (438)
T ss_pred c-------------h-------hcCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCccCCCCCH
Confidence 1 0 1234999999999999999999875 6899999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEeCC--eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHH-HHHhCC--CCCcc
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDF-MEQIGQ--GKRRV 320 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l-~~~~~~--~~~g~ 320 (547)
++.+.+.+.|++.||+++++++|++++.+ .+.+.. +|++ +++|.+|+|+|. .|+.+.+ ++..++ +.+|+
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~--~g~~--i~~D~viva~G~--~p~~~~l~l~~~~~~~~~~g~ 272 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT--EDET--YRFDALLYATGR--KPNTEPLGLENTDIELTERGA 272 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE--CCeE--EEcCEEEEeeCC--CCCcccCCchhcCcEECCCCc
Confidence 99999999999999999999999999753 444443 3554 999999999995 5555333 233444 56789
Q ss_pred EEeCCCCCcCCCCCEEEeCccCcc
Q 041537 321 LATNEWLRVKECENVYALGDCATI 344 (547)
Q Consensus 321 i~Vd~~l~~~~~~~VfaiGD~a~~ 344 (547)
|.||+++|+ +.|+|||+|||+..
T Consensus 273 i~vd~~~~t-~~~~IyaiGD~~~~ 295 (438)
T PRK07251 273 IKVDDYCQT-SVPGVFAVGDVNGG 295 (438)
T ss_pred EEECCCccc-CCCCEEEeeecCCC
Confidence 999999999 89999999999863
No 25
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=7.5e-34 Score=302.99 Aligned_cols=267 Identities=20% Similarity=0.332 Sum_probs=194.9
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhh-------------------h--ccc------cC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSV-------------------T--CGT------VE 78 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~-------------------~--~g~------~~ 78 (547)
...++|+|||||+||+++|..|++.|.+|+|||++. ++++...... . .|. .+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 456899999999999999999999999999999863 3332211100 0 010 01
Q ss_pred ccccchh------------HHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 79 ARSIAEP------------VRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 79 ~~~~~~~------------~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
...+... ++..++.. ..++++.++++.+|++...|.+.+ |+ ..++.||+||||||++|+.|+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~~g~v~~id~~~~~V~~~~----g~-~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILREN-AAITVLNGEARFVDERTLTVTLND----GG-EQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcC-CCeEEEEEEEEEecCCEEEEEecC----CC-eEEEECCEEEEeCCCCCCCCC
Confidence 1111111 11223222 148999999999999887887764 32 237999999999999999999
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCC
Q 041537 147 TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKD 226 (547)
Q Consensus 147 ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~ 226 (547)
+||+++.. +.+.+++..+. ...++++|||+|++|+|+|..|.++
T Consensus 157 i~G~~~~~--~~~~~~~~~l~--------------------~~~~~vvViG~G~~G~E~A~~l~~~-------------- 200 (468)
T PRK14694 157 VPGLAETP--YLTSTSALELD--------------------HIPERLLVIGASVVALELAQAFARL-------------- 200 (468)
T ss_pred CCCCCCCc--eEcchhhhchh--------------------cCCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 99986431 22223322211 1234999999999999999999876
Q ss_pred CceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--eEEEEeccCCeEEEEeeceEEEccCCCCCc
Q 041537 227 LVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVGTRP 304 (547)
Q Consensus 227 ~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p 304 (547)
+.+|+++++ +++++.+++++.+.+.+.|++.||++++++.|++++.+ .+.+.. . +.. +++|.||||+|.. |
T Consensus 201 g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~-~-~~~--i~~D~vi~a~G~~--p 273 (468)
T PRK14694 201 GSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILET-N-AGT--LRAEQLLVATGRT--P 273 (468)
T ss_pred CCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE-C-CCE--EEeCEEEEccCCC--C
Confidence 679999986 57889899999999999999999999999999999753 344432 2 333 9999999999964 4
Q ss_pred chHHH-HHHhCC-CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 305 AIKDF-MEQIGQ-GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 305 ~~~~l-~~~~~~-~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+...+ +..+++ ..+|+|.||+++|| +.|+|||+|||+.
T Consensus 274 n~~~l~l~~~g~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 313 (468)
T PRK14694 274 NTENLNLESIGVETERGAIRIDEHLQT-TVSGIYAAGDCTD 313 (468)
T ss_pred CcCCCCchhcCcccCCCeEeeCCCccc-CCCCEEEEeecCC
Confidence 44322 344565 45788999999999 8999999999986
No 26
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=6.7e-34 Score=302.39 Aligned_cols=273 Identities=21% Similarity=0.344 Sum_probs=194.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCC-CCeEEEEcCC--------CCCccCCChhhh----------------h----ccc-
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVS-SYDVQVVSPQ--------NYFAFTPLLPSV----------------T----CGT- 76 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~-g~~Vtlid~~--------~~~~~~p~l~~~----------------~----~g~- 76 (547)
..+||+|||||+||..||..+++. |.+|+|||+. ..++++.+...+ . .|.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 468999999999999999999986 8999999973 345543211110 0 010
Q ss_pred -------cCccccc-----------hhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCC-CCCceeeeecCEEEEc
Q 041537 77 -------VEARSIA-----------EPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNID-KETRDFSLEYDYLIIA 137 (547)
Q Consensus 77 -------~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~-~g~~~~~i~yD~LViA 137 (547)
.+...+. ..+..+++.. ..+++++++...+++ ++|.+....+ ++...+.+.||+||||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~-~gv~~i~G~a~f~~~--~~v~V~~~~~~~~~~~~~~~~d~lIIA 158 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADT-EGLTFFLGWGALEDK--NVVLVRESADPKSAVKERLQAEHILLA 158 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEEEEEEccC--CEEEEeeccCCCCCcceEEECCEEEEe
Confidence 0110111 1122334432 138999999988874 5666653110 1111247999999999
Q ss_pred cCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhh
Q 041537 138 VGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDL 217 (547)
Q Consensus 138 tG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~ 217 (547)
||++|..|++||.+ ++ .+.+++..+ . ...++++|||||++|+|+|..+..+..
T Consensus 159 TGs~p~~p~i~G~~-~~---~~~~~~~~~-------------~-------~~~~~vvIIGgG~iG~E~A~~~~~l~~--- 211 (486)
T TIGR01423 159 TGSWPQMLGIPGIE-HC---ISSNEAFYL-------------D-------EPPRRVLTVGGGFISVEFAGIFNAYKP--- 211 (486)
T ss_pred cCCCCCCCCCCChh-he---echhhhhcc-------------c-------cCCCeEEEECCCHHHHHHHHHHHHhcc---
Confidence 99999999999974 22 233332211 0 123599999999999999998876521
Q ss_pred hhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--Ce-EEEEeccCCeEEEEeeceE
Q 041537 218 INLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KE-ITMKIKSTGAVCSIPHGLV 294 (547)
Q Consensus 218 ~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~D~v 294 (547)
.+.+|+|+++++++++.+++++.+.+.+.|+++||++++++.|++++. ++ +.+.. .+|+. +++|.|
T Consensus 212 --------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~-~~g~~--i~~D~v 280 (486)
T TIGR01423 212 --------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTF-ESGKT--LDVDVV 280 (486)
T ss_pred --------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEE-cCCCE--EEcCEE
Confidence 268999999999999999999999999999999999999999999963 22 33332 23654 999999
Q ss_pred EEccCCCCCcchHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 295 LWSTGVGTRPAIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 295 v~a~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+||+|. .|+...+ ++.+++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 281 l~a~G~--~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~ 329 (486)
T TIGR01423 281 MMAIGR--VPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD 329 (486)
T ss_pred EEeeCC--CcCcccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCC
Confidence 999995 5555333 344555 67789999999998 8999999999975
No 27
>PLN02546 glutathione reductase
Probab=100.00 E-value=4.7e-34 Score=306.76 Aligned_cols=260 Identities=21% Similarity=0.339 Sum_probs=193.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCC---------CCCccCCChhhhh--------------------ccc--
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ---------NYFAFTPLLPSVT--------------------CGT-- 76 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~---------~~~~~~p~l~~~~--------------------~g~-- 76 (547)
.+||+|||||+||+.+|..+++.|.+|+|||+. ..++++.+...+. .|.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 479999999999999999999999999999962 2233332111100 010
Q ss_pred -----cCc-----------cccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCC
Q 041537 77 -----VEA-----------RSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA 140 (547)
Q Consensus 77 -----~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~ 140 (547)
.+. ..+...+..++++.+ +++++++++.+|+. +|.+. |. .+.||+||||||+
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~g--V~~i~G~a~~vd~~--~V~v~-----G~---~~~~D~LVIATGs 226 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAG--VTLIEGRGKIVDPH--TVDVD-----GK---LYTARNILIAVGG 226 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEeEEEEccCC--EEEEC-----CE---EEECCEEEEeCCC
Confidence 010 011223445556666 88999999999875 56553 43 7999999999999
Q ss_pred CccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhh
Q 041537 141 QVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINL 220 (547)
Q Consensus 141 ~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~ 220 (547)
+|..|++||.+ ++ .+.+++.. ++ ...++++|||||++|+|+|..|..+
T Consensus 227 ~p~~P~IpG~~-~v---~~~~~~l~-------------~~-------~~~k~V~VIGgG~iGvE~A~~L~~~-------- 274 (558)
T PLN02546 227 RPFIPDIPGIE-HA---IDSDAALD-------------LP-------SKPEKIAIVGGGYIALEFAGIFNGL-------- 274 (558)
T ss_pred CCCCCCCCChh-hc---cCHHHHHh-------------cc-------ccCCeEEEECCCHHHHHHHHHHHhc--------
Confidence 99999999974 22 12222211 11 1345999999999999999999876
Q ss_pred CCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC---CeEEEEeccCCeEEEEeeceEEEc
Q 041537 221 YPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD---KEITMKIKSTGAVCSIPHGLVLWS 297 (547)
Q Consensus 221 ~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~---~~v~~~~~~~G~~~~i~~D~vv~a 297 (547)
+.+|+++++.+++++.+++++.+.+.+.|+++||++++++.+.+++. +.+.+.. .+++ .+.+|.|||+
T Consensus 275 ------g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~-~~g~--~~~~D~Viva 345 (558)
T PLN02546 275 ------KSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKT-NKGT--VEGFSHVMFA 345 (558)
T ss_pred ------CCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEE-CCeE--EEecCEEEEe
Confidence 57999999999999999999999999999999999999999999963 3344443 2233 2558999999
Q ss_pred cCCCCCcchHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 298 TGVGTRPAIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 298 ~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+|. .|+...| ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 346 ~G~--~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~ 391 (558)
T PLN02546 346 TGR--KPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTD 391 (558)
T ss_pred ecc--ccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCC
Confidence 995 4555433 455665 56789999999998 9999999999986
No 28
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=7.3e-34 Score=305.10 Aligned_cols=269 Identities=19% Similarity=0.337 Sum_probs=194.3
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhh--------------------cc-----ccCc
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVT--------------------CG-----TVEA 79 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~--------------------~g-----~~~~ 79 (547)
....+||+|||||+||++||..+++.|.+|+|||++ .++++.+...+. .| ..+.
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 345689999999999999999999999999999986 444432211110 01 0111
Q ss_pred ccc-----------chhHHHHHHhCCCcEEEEEEEEEEEECCCCEEE--------------------Eec----CCCCCC
Q 041537 80 RSI-----------AEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVF--------------------CKS----NIDKET 124 (547)
Q Consensus 80 ~~~-----------~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~--------------------~~~----~~~~g~ 124 (547)
..+ ...+++++++.+ +++++++...+++. +|. +.. ..++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~~G~a~f~~~~--~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 199 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDN--VEYFEGKGSLLSEN--QVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQ 199 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC--cEEEEEEEEEecCC--EEEeeccccccccccccccccceeeeccceecCCCc
Confidence 111 112334455555 88899998877744 332 110 000133
Q ss_pred ceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHH
Q 041537 125 RDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVE 204 (547)
Q Consensus 125 ~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE 204 (547)
++.||+||||||++|..|++||.+ +. .+.++... + ...++++|||+|++|+|
T Consensus 200 ---~i~ad~lVIATGS~P~~P~IpG~~-~v---~ts~~~~~-------------l--------~~pk~VvIIGgG~iGlE 251 (561)
T PTZ00058 200 ---VIEGKNILIAVGNKPIFPDVKGKE-FT---ISSDDFFK-------------I--------KEAKRIGIAGSGYIAVE 251 (561)
T ss_pred ---EEECCEEEEecCCCCCCCCCCCce-eE---EEHHHHhh-------------c--------cCCCEEEEECCcHHHHH
Confidence 799999999999999999999963 22 12222111 1 11459999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC---eEEEEec
Q 041537 205 FAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK---EITMKIK 281 (547)
Q Consensus 205 ~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~---~v~~~~~ 281 (547)
+|..+.++ +.+|+++++++++++.+++++.+.+.+.|++.||++++++.|.+++++ .+.+...
T Consensus 252 ~A~~l~~~--------------G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~ 317 (561)
T PTZ00058 252 LINVVNRL--------------GAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLS 317 (561)
T ss_pred HHHHHHHc--------------CCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEEC
Confidence 99999886 689999999999999999999999999999999999999999999753 3443322
Q ss_pred cCCeEEEEeeceEEEccCCCCCcchHHH-HHHhCC-CCCccEEeCCCCCcCCCCCEEEeCccCccC
Q 041537 282 STGAVCSIPHGLVLWSTGVGTRPAIKDF-MEQIGQ-GKRRVLATNEWLRVKECENVYALGDCATID 345 (547)
Q Consensus 282 ~~G~~~~i~~D~vv~a~G~~~~p~~~~l-~~~~~~-~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 345 (547)
.+++ ++++|.|++|+| ..|+++.+ ++.+++ ..+|+|.||+++|| +.|+|||+|||+...
T Consensus 318 ~~~~--~i~aD~VlvA~G--r~Pn~~~L~l~~~~~~~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 318 DGRK--YEHFDYVIYCVG--RSPNTEDLNLKALNIKTPKGYIKVDDNQRT-SVKHIYAVGDCCMVK 378 (561)
T ss_pred CCCE--EEECCEEEECcC--CCCCccccCccccceecCCCeEEECcCCcc-CCCCEEEeEeccCcc
Confidence 2233 499999999999 46666544 223333 56789999999998 999999999999854
No 29
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-33 Score=299.45 Aligned_cols=268 Identities=24% Similarity=0.343 Sum_probs=186.0
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhh--------------------ccccC------ccc
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVT--------------------CGTVE------ARS 81 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~--------------------~g~~~------~~~ 81 (547)
++||+|||||+||++||.+|++.|.+|+|||++ .++++.+..... ...++ ...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 82 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence 589999999999999999999999999999986 333322111100 00000 000
Q ss_pred cc-----------hhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCc
Q 041537 82 IA-----------EPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGV 150 (547)
Q Consensus 82 ~~-----------~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~ 150 (547)
+. ..+..+++..+ ++.+.++...++. +++.+.... |+ ..++.||+||||||++|..+ ||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~g~~~~~~~--~~v~v~~~~--g~-~~~~~~d~lViATGs~p~~~--pg~ 153 (466)
T PRK07818 83 AFDRSRKVAEGRVKGVHFLMKKNK--ITEIHGYGTFTDA--NTLEVDLND--GG-TETVTFDNAIIATGSSTRLL--PGT 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEcCC--CEEEEEecC--CC-eeEEEcCEEEEeCCCCCCCC--CCC
Confidence 00 01112222334 6778888777764 455554311 22 24799999999999998754 664
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceE
Q 041537 151 LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRI 230 (547)
Q Consensus 151 ~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V 230 (547)
+... .+.+..+... . . ...++++|||+|++|+|+|..++++ +.+|
T Consensus 154 ~~~~-~v~~~~~~~~----------~---~-------~~~~~vvVIGgG~ig~E~A~~l~~~--------------G~~V 198 (466)
T PRK07818 154 SLSE-NVVTYEEQIL----------S---R-------ELPKSIVIAGAGAIGMEFAYVLKNY--------------GVDV 198 (466)
T ss_pred CCCC-cEEchHHHhc----------c---c-------cCCCeEEEECCcHHHHHHHHHHHHc--------------CCeE
Confidence 3111 1112221100 0 0 1235999999999999999999876 6799
Q ss_pred EEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCe--EEEEec-cCCeEEEEeeceEEEccCCCCCcchH
Q 041537 231 TLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKE--ITMKIK-STGAVCSIPHGLVLWSTGVGTRPAIK 307 (547)
Q Consensus 231 ~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~--v~~~~~-~~G~~~~i~~D~vv~a~G~~~~p~~~ 307 (547)
+++++.++++|.+++++.+.+.+.|+++||+++++++|+++++++ +.+... .+|+..++++|.||||+|. .|+++
T Consensus 199 tlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~--~pn~~ 276 (466)
T PRK07818 199 TIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF--APRVE 276 (466)
T ss_pred EEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc--ccCCC
Confidence 999999999999999999999999999999999999999997532 332211 2464445999999999995 55554
Q ss_pred HH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 308 DF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 308 ~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
.+ ++..++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 277 ~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~ 314 (466)
T PRK07818 277 GYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTA 314 (466)
T ss_pred CCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCC
Confidence 33 345555 57789999999999 9999999999975
No 30
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.1e-33 Score=301.31 Aligned_cols=267 Identities=22% Similarity=0.349 Sum_probs=192.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhh--------------------cccc---------C
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVT--------------------CGTV---------E 78 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~--------------------~g~~---------~ 78 (547)
|++|+|||||++|+.+|..+++.|.+|+|||++. ++++.+..... .|.. +
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 5689999999999999999999999999999875 44433221111 0100 0
Q ss_pred cccc-----------chhHHHHHHhCCCcEEEEEEEEEEEE--CCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 79 ARSI-----------AEPVRNIIKKRNAEIQFWEAEAIKID--AAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 79 ~~~~-----------~~~~~~~~~~~~~~v~~~~~~v~~id--~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
...+ ...+++.++..+ +++++++++.++ .+.+++.+.... |. ..++.||+||||||++|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~g--V~~~~g~~~~~~~~~~~~~v~V~~~~--g~-~~~~~~d~lViATGs~p~~~ 154 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREG--VRVIAGRGRLIDPGLGPHRVKVTTAD--GG-EETLDADVVLIATGASPRIL 154 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEeecccCCCEEEEEeCC--Cc-eEEEecCEEEEcCCCCCCCC
Confidence 1111 122345556666 888999998855 445555554311 22 23699999999999999866
Q ss_pred CCCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCC
Q 041537 146 GTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTV 224 (547)
Q Consensus 146 ~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~ 224 (547)
+.++.. ++.+... +...+ . ...++++|||+|++|+|+|..|.++
T Consensus 155 p~~~~~~~~v~~~~---~~~~~-------------~-------~~~~~vvVIGgG~ig~E~A~~l~~~------------ 199 (466)
T PRK07845 155 PTAEPDGERILTWR---QLYDL-------------D-------ELPEHLIVVGSGVTGAEFASAYTEL------------ 199 (466)
T ss_pred CCCCCCCceEEeeh---hhhcc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHc------------
Confidence 554432 2222221 11110 0 1124999999999999999999876
Q ss_pred CCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 225 KDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 225 ~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
+.+|+++++++++++.+++++.+.+.+.|+++||+++++++|++++ ++++.+.. .+|++ +++|.|+|++|.
T Consensus 200 --g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~-~~g~~--l~~D~vl~a~G~-- 272 (466)
T PRK07845 200 --GVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTL-TDGRT--VEGSHALMAVGS-- 272 (466)
T ss_pred --CCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEE-CCCcE--EEecEEEEeecC--
Confidence 6899999999999999999999999999999999999999999995 44555443 34654 999999999995
Q ss_pred CcchHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 303 RPAIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 303 ~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
.|+...+ ++++++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 273 ~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~ 315 (466)
T PRK07845 273 VPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTG 315 (466)
T ss_pred CcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccC
Confidence 4544332 345555 67789999999999 9999999999975
No 31
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.4e-33 Score=283.91 Aligned_cols=264 Identities=18% Similarity=0.247 Sum_probs=187.2
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCC----hhhhhc--cccCccccchhHHHHHHhCCCcEEEEEE
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPL----LPSVTC--GTVEARSIAEPVRNIIKKRNAEIQFWEA 102 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~----l~~~~~--g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 102 (547)
++|+|||||+|||++|..|++.|++|+|||+++. +.... .+.++. ......++...+++.+++.+ ++++.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--v~~~~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFG--AEIIYE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcC--CeEEEE
Confidence 4899999999999999999999999999998762 21111 111111 01222456677888888888 555568
Q ss_pred EEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCC
Q 041537 103 EAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGL 182 (547)
Q Consensus 103 ~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 182 (547)
+|+.+++.++.+.+.... +. ++.||+||+|||+.++.+++||..+... +.+..... .
T Consensus 78 ~v~~v~~~~~~~~v~~~~--~~---~~~~d~liiAtG~~~~~~~i~g~~~~~~--~~~~~~~~----------------~ 134 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGD--GK---EYTAKAVIIATGASARKLGIPGEDEFLG--RGVSYCAT----------------C 134 (300)
T ss_pred EEEEEEecCCeeEEEeCC--CC---EEEeCEEEECCCCCcccCCCCChhhcCC--ccEEEeee----------------c
Confidence 999999987755443211 33 8999999999999999888998643100 00000000 0
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhC-CcE
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRD-GIE 261 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~-GV~ 261 (547)
......+++|+|||+|++|+|+|..|.+. +.+|+++++.+.+.. ...+.+.++++ ||+
T Consensus 135 -~~~~~~~~~v~ViG~G~~~~e~a~~l~~~--------------~~~V~~v~~~~~~~~------~~~~~~~l~~~~gv~ 193 (300)
T TIGR01292 135 -DGPFFKNKEVAVVGGGDSAIEEALYLTRI--------------AKKVTLVHRRDKFRA------EKILLDRLRKNPNIE 193 (300)
T ss_pred -ChhhcCCCEEEEECCChHHHHHHHHHHhh--------------cCEEEEEEeCcccCc------CHHHHHHHHhCCCeE
Confidence 00112456999999999999999999875 579999999876532 34456677777 999
Q ss_pred EEcCceEEEEeCCe----EEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHh-CCCCCccEEeCCCCCcCCCCCEE
Q 041537 262 VLTECRVVNVSDKE----ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQI-GQGKRRVLATNEWLRVKECENVY 336 (547)
Q Consensus 262 v~~~~~V~~v~~~~----v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~-~~~~~g~i~Vd~~l~~~~~~~Vf 336 (547)
+++++++++++++. +.+.+..+|+..++++|++|||+|+.++. .++..+ .++.+|++.||+++++ ++||||
T Consensus 194 ~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~---~~l~~~~~~~~~g~i~v~~~~~t-~~~~vy 269 (300)
T TIGR01292 194 FLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNT---ELLKGLLELDEGGYIVTDEGMRT-SVPGVF 269 (300)
T ss_pred EEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCCh---HHHHHhheecCCCcEEECCCCcc-CCCCEE
Confidence 99999999998653 44443333554569999999999965443 333333 3466789999999998 999999
Q ss_pred EeCccCc
Q 041537 337 ALGDCAT 343 (547)
Q Consensus 337 aiGD~a~ 343 (547)
++|||+.
T Consensus 270 a~GD~~~ 276 (300)
T TIGR01292 270 AAGDVRD 276 (300)
T ss_pred EeecccC
Confidence 9999986
No 32
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.2e-33 Score=297.71 Aligned_cols=269 Identities=17% Similarity=0.262 Sum_probs=192.2
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhh-------------------hh-ccc------cC
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPS-------------------VT-CGT------VE 78 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~-------------------~~-~g~------~~ 78 (547)
...++||+|||||+||+++|..|++.|.+|+|||+.+.++++.+... .. .|. .+
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 34568999999999999999999999999999999766554332111 00 010 00
Q ss_pred ccccc-------hh-----HHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 79 ARSIA-------EP-----VRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 79 ~~~~~-------~~-----~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
...+. .. +..+++.. ..++++++++..++...-.|.+.+ |+ ..++.||+||||||++|..|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~G~a~f~~~~~v~v~~~~----g~-~~~~~~d~lViATGs~p~~p~ 166 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGN-PALTLLKGYARFKDGNTLVVRLHD----GG-ERVLAADRCLIATGSTPTIPP 166 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhc-CCeEEEEEEEEEecCCEEEEEeCC----Cc-eEEEEeCEEEEecCCCCCCCC
Confidence 00110 00 12223322 138889999988886533343332 32 247999999999999999999
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCC
Q 041537 147 TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKD 226 (547)
Q Consensus 147 ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~ 226 (547)
+||..+.. .+.+ .++.. . . ...++++|||+|++|+|+|..+..+
T Consensus 167 i~G~~~~~-~~~~-~~~l~----------~---~-------~~~k~vvVIGgG~iG~E~A~~l~~~-------------- 210 (479)
T PRK14727 167 IPGLMDTP-YWTS-TEALF----------S---D-------ELPASLTVIGSSVVAAEIAQAYARL-------------- 210 (479)
T ss_pred CCCcCccc-eecc-hHHhc----------c---c-------cCCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 99975321 1111 12110 0 0 1235999999999999999999876
Q ss_pred CceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCc
Q 041537 227 LVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRP 304 (547)
Q Consensus 227 ~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p 304 (547)
+.+|+++++. ++++.+++.+.+.+.+.|++.||+++++++|++++. +.+.+.. .+++ +++|.||||+|. .|
T Consensus 211 G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~-~~g~---i~aD~VlvA~G~--~p 283 (479)
T PRK14727 211 GSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTT-GHGE---LRAEKLLISTGR--HA 283 (479)
T ss_pred CCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEE-cCCe---EEeCEEEEccCC--CC
Confidence 6899999884 788889999999999999999999999999999863 4454443 2243 899999999995 55
Q ss_pred chHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 305 AIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 305 ~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
++..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 284 n~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~ 324 (479)
T PRK14727 284 NTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSD 324 (479)
T ss_pred CccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCC
Confidence 55333 344555 57789999999999 9999999999986
No 33
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=5.8e-33 Score=294.03 Aligned_cols=258 Identities=21% Similarity=0.271 Sum_probs=188.7
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhh--------------------ccc------cCcccc
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVT--------------------CGT------VEARSI 82 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~--------------------~g~------~~~~~~ 82 (547)
+||||||||+||.++|..+ .|.+|+|||++ .++++.+...+. .|. .+...+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 6999999999999999775 49999999985 344432211110 111 111111
Q ss_pred chh-------H-----HHH-HHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCC
Q 041537 83 AEP-------V-----RNI-IKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPG 149 (547)
Q Consensus 83 ~~~-------~-----~~~-~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG 149 (547)
... + ..+ ++..+ ++++++++..++ .++|.+.+ |. ++.||+||||||++|+.|++||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~a~~~~--~~~V~v~~----g~---~~~~d~lViATGs~p~~p~i~g 147 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPN--IDVYRGHARFIG--PKTLRTGD----GE---EITADQVVIAAGSRPVIPPVIA 147 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCC--cEEEEEEEEEec--CCEEEECC----CC---EEEeCEEEEcCCCCCCCCCCCC
Confidence 111 1 111 33444 888999998885 66888864 43 7999999999999999999998
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCce
Q 041537 150 VLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR 229 (547)
Q Consensus 150 ~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~ 229 (547)
... ..+.+.+++..+.. ..++++|||+|++|+|+|..+.++ +.+
T Consensus 148 ~~~--~~~~~~~~~~~l~~--------------------~~~~vvIIGgG~iG~E~A~~l~~~--------------G~~ 191 (451)
T PRK07846 148 DSG--VRYHTSDTIMRLPE--------------------LPESLVIVGGGFIAAEFAHVFSAL--------------GVR 191 (451)
T ss_pred cCC--ccEEchHHHhhhhh--------------------cCCeEEEECCCHHHHHHHHHHHHc--------------CCe
Confidence 642 22345455433221 124999999999999999999876 689
Q ss_pred EEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--eEEEEeccCCeEEEEeeceEEEccCCCCCcchH
Q 041537 230 ITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIK 307 (547)
Q Consensus 230 V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~ 307 (547)
|+++++++++++.+++++.+.+.+.+ +.||+++++++|++++.+ .+.+.. .+|+. +++|.|+||+|. .|+++
T Consensus 192 Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~~--i~~D~vl~a~G~--~pn~~ 265 (451)
T PRK07846 192 VTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRL-DDGST--VEADVLLVATGR--VPNGD 265 (451)
T ss_pred EEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEE-CCCcE--eecCEEEEEECC--ccCcc
Confidence 99999999999999999988877654 568999999999999643 454443 34654 999999999995 55554
Q ss_pred HH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 308 DF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 308 ~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
.+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 266 ~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~ 303 (451)
T PRK07846 266 LLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSS 303 (451)
T ss_pred ccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCC
Confidence 33 345555 67889999999998 9999999999985
No 34
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2.1e-33 Score=299.21 Aligned_cols=267 Identities=16% Similarity=0.246 Sum_probs=191.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC--------CCccCCCh----h------------hh----hccc---
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN--------YFAFTPLL----P------------SV----TCGT--- 76 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~--------~~~~~p~l----~------------~~----~~g~--- 76 (547)
.+||||||||+||+.+|..+++.|.+|+|||+.. .++++.+. | .. ..|.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4799999999999999999999999999999731 23333111 1 00 0010
Q ss_pred ----cCccc-----------cchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC
Q 041537 77 ----VEARS-----------IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141 (547)
Q Consensus 77 ----~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~ 141 (547)
.+... +...++.+++..+ +++++++...+++. +|.+.+.. +. ...++||+||||||++
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~--v~~i~G~a~f~~~~--~v~v~~~~--g~-~~~~~~d~lVIATGs~ 154 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKK--VNYENAYAEFVDKH--RIKATNKK--GK-EKIYSAERFLIATGER 154 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCC--cEEEEEEEEEcCCC--EEEEeccC--CC-ceEEEeCEEEEecCCC
Confidence 00000 1122344556666 88999999999865 56554311 21 2379999999999999
Q ss_pred ccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhC
Q 041537 142 VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLY 221 (547)
Q Consensus 142 ~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~ 221 (547)
|+.|++||..+... +.+++..+ . ...++++|||||++|+|+|..|.++
T Consensus 155 p~~p~ipG~~~~~~---~~~~~~~~-------------~-------~~~~~vvIIGgG~iG~E~A~~l~~~--------- 202 (484)
T TIGR01438 155 PRYPGIPGAKELCI---TSDDLFSL-------------P-------YCPGKTLVVGASYVALECAGFLAGI--------- 202 (484)
T ss_pred CCCCCCCCccceee---cHHHhhcc-------------c-------ccCCCEEEECCCHHHHHHHHHHHHh---------
Confidence 99999999755322 22222111 1 1224899999999999999999986
Q ss_pred CCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCe-EEEEeeceEEEcc
Q 041537 222 PTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGA-VCSIPHGLVLWST 298 (547)
Q Consensus 222 ~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~-~~~i~~D~vv~a~ 298 (547)
+.+|+++++ +.+++.+++++.+.+.+.|+++||++++++.+++++. +.+.+... +++ ..++++|.|+||+
T Consensus 203 -----G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~-~~~~~~~i~~D~vl~a~ 275 (484)
T TIGR01438 203 -----GLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFT-DSTNGIEEEYDTVLLAI 275 (484)
T ss_pred -----CCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEe-cCCcceEEEeCEEEEEe
Confidence 679999997 5889999999999999999999999999999888863 33333321 232 1249999999999
Q ss_pred CCCCCcchHHH-HHHhCC--CC-CccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 299 GVGTRPAIKDF-MEQIGQ--GK-RRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 299 G~~~~p~~~~l-~~~~~~--~~-~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
|. .|+++.+ ++.+++ +. +|+|.||+++|| +.|+|||+|||+.
T Consensus 276 G~--~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~ 321 (484)
T TIGR01438 276 GR--DACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILE 321 (484)
T ss_pred cC--CcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecC
Confidence 95 5555433 345555 33 488999999998 8999999999985
No 35
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=4.2e-33 Score=297.48 Aligned_cols=266 Identities=23% Similarity=0.364 Sum_probs=192.0
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhh-------------------hhccccCcc-------cc
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPS-------------------VTCGTVEAR-------SI 82 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~-------------------~~~g~~~~~-------~~ 82 (547)
+||+|||||+||+++|..|++.|.+|+|||+ +.++++..... .....++.. .+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 7999999999999999999999999999999 55555321110 000011100 01
Q ss_pred c-----------hhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCC-Cc
Q 041537 83 A-----------EPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTP-GV 150 (547)
Q Consensus 83 ~-----------~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ip-G~ 150 (547)
. ..+..+++..+ ++++.+++..+++. .+.+.... +. .++.||+||||||++|+.|++| +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~--~~~v~~~~--g~--~~~~~d~lVlAtG~~p~~~~~~~~~ 152 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNK--VTVIKGEAKFLDPG--TVLVTGEN--GE--ETLTAKNIIIATGSRPRSLPGPFDF 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccCC--EEEEecCC--Cc--EEEEeCEEEEcCCCCCCCCCCCCCC
Confidence 0 11223344555 78889999888755 44444311 21 3799999999999999888776 32
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceE
Q 041537 151 LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRI 230 (547)
Q Consensus 151 ~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V 230 (547)
.. ..+.+.+++..+. ...++++|||||++|+|+|..|.++ +.+|
T Consensus 153 ~~--~~~~~~~~~~~~~--------------------~~~~~vvViGgG~~g~e~A~~l~~~--------------g~~V 196 (461)
T TIGR01350 153 DG--EVVITSTGALNLK--------------------EVPESLVIIGGGVIGIEFASIFASL--------------GSKV 196 (461)
T ss_pred CC--ceEEcchHHhccc--------------------cCCCeEEEECCCHHHHHHHHHHHHc--------------CCcE
Confidence 21 1233333332211 1235999999999999999999875 6799
Q ss_pred EEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCCCCCcchHH
Q 041537 231 TLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKD 308 (547)
Q Consensus 231 ~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~ 308 (547)
+++++.++++|.+++++.+.+.+.|++.||+++++++|++++ ++.+.+.. .+|+..++++|.+|||+|. .|+...
T Consensus 197 tli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~-~~g~~~~i~~D~vi~a~G~--~p~~~~ 273 (461)
T TIGR01350 197 TVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYEN-KGGETETLTGEKVLVAVGR--KPNTEG 273 (461)
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEE-eCCcEEEEEeCEEEEecCC--cccCCC
Confidence 999999999999999999999999999999999999999886 34565543 2353335999999999995 444532
Q ss_pred -HHHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 309 -FMEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 309 -l~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+++.+++ +.+|+|.||+++|+ +.|+|||+|||+.
T Consensus 274 l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~ 310 (461)
T TIGR01350 274 LGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIG 310 (461)
T ss_pred CCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCC
Confidence 2445555 67789999999999 8999999999975
No 36
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=3.5e-33 Score=295.11 Aligned_cols=262 Identities=26% Similarity=0.434 Sum_probs=206.7
Q ss_pred HHHHhcCC--CCCeEEEEcCCCCCccCC-ChhhhhccccCc-cc-cchhHHHHHHhCCCcEEE-EEEEEEEEECCCCEEE
Q 041537 42 SFLKDLDV--SSYDVQVVSPQNYFAFTP-LLPSVTCGTVEA-RS-IAEPVRNIIKKRNAEIQF-WEAEAIKIDAAKNEVF 115 (547)
Q Consensus 42 ~aA~~L~~--~g~~Vtlid~~~~~~~~p-~l~~~~~g~~~~-~~-~~~~~~~~~~~~~~~v~~-~~~~v~~id~~~~~v~ 115 (547)
+||++|++ ..++|||||+++++.|.| .++.+..+.... .+ +....+.++.+.+ +++ ..++|+.||++++.|.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~g--v~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRG--IDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcC--CeEEecCEEEEEECCCCEEE
Confidence 36777774 468899999999999988 477777665542 22 3333456667787 444 4679999999999998
Q ss_pred EecCCCCCCceeeee--cCEEEEccCCCccCCCCCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhcccc
Q 041537 116 CKSNIDKETRDFSLE--YDYLIIAVGAQVNTFGTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLH 192 (547)
Q Consensus 116 ~~~~~~~g~~~~~i~--yD~LViAtG~~~~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (547)
+.+.. .+ ..+. ||+||||||++|+.|++||++ ++.+.++++.++..+++.+.. ...++
T Consensus 79 ~~~~~-~~---~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~~~~~ 139 (427)
T TIGR03385 79 VRNNK-TN---ETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------NKVEN 139 (427)
T ss_pred EEECC-CC---CEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------cCCCe
Confidence 87521 01 2566 999999999999999999986 667788899998888776532 23459
Q ss_pred EEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-CcccHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 041537 193 FVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-NSFDERISSFAEKKFQRDGIEVLTECRVVNV 271 (547)
Q Consensus 193 vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v 271 (547)
|+|||||++|+|+|..|.+. +.+|+++++.+.++ +.+++++.+.+.+.|++.||++++++.|+++
T Consensus 140 vvViGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 205 (427)
T TIGR03385 140 VVIIGGGYIGIEMAEALRER--------------GKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSI 205 (427)
T ss_pred EEEECCCHHHHHHHHHHHhC--------------CCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 99999999999999988875 67999999999884 6788999999999999999999999999999
Q ss_pred eCCeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCccC
Q 041537 272 SDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATNEWLRVKECENVYALGDCATID 345 (547)
Q Consensus 272 ~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 345 (547)
+.++..+.. .+|+. +++|.+|||+|. .|+. .+++.+++ +.+|+|.||+++|+ +.|+|||+|||+..+
T Consensus 206 ~~~~~~v~~-~~g~~--i~~D~vi~a~G~--~p~~-~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~ 274 (427)
T TIGR03385 206 EGEERVKVF-TSGGV--YQADMVILATGI--KPNS-ELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESH 274 (427)
T ss_pred ecCCCEEEE-cCCCE--EEeCEEEECCCc--cCCH-HHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEee
Confidence 875542221 23664 999999999995 4444 35566665 56789999999998 899999999999764
No 37
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.7e-33 Score=297.92 Aligned_cols=263 Identities=20% Similarity=0.354 Sum_probs=188.6
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCCh----h-----h-----------hhccc--------cCccc
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLL----P-----S-----------VTCGT--------VEARS 81 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l----~-----~-----------~~~g~--------~~~~~ 81 (547)
+|||||||+||+++|..|++.|.+|+|||++. ++++.+. | + ...|. .+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 89999999999999999999999999999875 3332211 0 0 00111 11111
Q ss_pred cch-----------hHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCc
Q 041537 82 IAE-----------PVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGV 150 (547)
Q Consensus 82 ~~~-----------~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~ 150 (547)
+.. .++.+++..+ ++++++++..+|.....|..++ +. .++.||+||||||++|..+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~a~~~~~~~v~v~~~~----~~--~~~~~d~lviATGs~p~~~p~~~~ 152 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNK--IKVIQGKASFETDHRVRVEYGD----KE--EVVDAEQFIIAAGSEPTELPFAPF 152 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC--cEEEEEEEEEccCCEEEEeeCC----Cc--EEEECCEEEEeCCCCCCCCCCCCC
Confidence 111 1223344445 8899999999985543443322 22 379999999999999988877775
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceE
Q 041537 151 LENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRI 230 (547)
Q Consensus 151 ~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V 230 (547)
... . +.+..++..+ . ...++++|||||++|+|+|..+.++ +.+|
T Consensus 153 ~~~-~-v~~~~~~~~~-------------~-------~~~~~vvIIGgG~iG~E~A~~l~~~--------------g~~V 196 (458)
T PRK06912 153 DGK-W-IINSKHAMSL-------------P-------SIPSSLLIVGGGVIGCEFASIYSRL--------------GTKV 196 (458)
T ss_pred CCC-e-EEcchHHhCc-------------c-------ccCCcEEEECCCHHHHHHHHHHHHc--------------CCeE
Confidence 321 1 1122222211 1 1124999999999999999988765 6899
Q ss_pred EEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCe--EEEEeccCCeEEEEeeceEEEccCCCCCcchHH
Q 041537 231 TLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKE--ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKD 308 (547)
Q Consensus 231 ~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~ 308 (547)
+++++.+++++.+++++.+.+.+.|++.||+++++++|++++.+. +.+.. +|+..++++|.||+|+|. .|+++.
T Consensus 197 tli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~--~g~~~~i~~D~vivA~G~--~p~~~~ 272 (458)
T PRK06912 197 TIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY--EGSIQEVNAEFVLVSVGR--KPRVQQ 272 (458)
T ss_pred EEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE--CCceEEEEeCEEEEecCC--ccCCCC
Confidence 999999999999999999999999999999999999999997543 44443 354345999999999994 555543
Q ss_pred H-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 309 F-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 309 l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+ ++..++ +.+| |.||+++|| +.|||||+|||+.
T Consensus 273 l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~ 308 (458)
T PRK06912 273 LNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIG 308 (458)
T ss_pred CCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCC
Confidence 3 344555 3444 999999998 8999999999975
No 38
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.2e-33 Score=297.30 Aligned_cols=263 Identities=24% Similarity=0.337 Sum_probs=189.1
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCCh----h------------h---hh-c------cccCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLL----P------------S---VT-C------GTVEAR 80 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l----~------------~---~~-~------g~~~~~ 80 (547)
+++||||||||+||+++|.+|++.|.+|+|||+ +.++++.+. | . .. . ...+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 458999999999999999999999999999999 445443321 0 0 00 0 011112
Q ss_pred ccchhHH------------HHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCC
Q 041537 81 SIAEPVR------------NIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTP 148 (547)
Q Consensus 81 ~~~~~~~------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ip 148 (547)
++....+ ..+...+ ++++.+++..++.. .+.+. +. ++.||+||||||+. .|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~--~v~v~-----~~---~~~~d~lIiATGs~--~p~ip 146 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPK--IDKIKGTARFVDPN--TVEVN-----GE---RIEAKNIVIATGSR--VPPIP 146 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCC--CEEEEEEEEEccCC--EEEEC-----cE---EEEeCEEEEeCCCC--CCCCC
Confidence 2222222 2223334 77888888887754 55552 33 79999999999998 55677
Q ss_pred Cccc-cccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCC
Q 041537 149 GVLE-NCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDL 227 (547)
Q Consensus 149 G~~e-~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~ 227 (547)
|..+ ....+.+.+++..+. ...++++|||+|++|+|+|..|.++ +
T Consensus 147 g~~~~~~~~~~~~~~~~~~~--------------------~~~k~v~VIGgG~~g~E~A~~l~~~--------------g 192 (460)
T PRK06292 147 GVWLILGDRLLTSDDAFELD--------------------KLPKSLAVIGGGVIGLELGQALSRL--------------G 192 (460)
T ss_pred CCcccCCCcEECchHHhCcc--------------------ccCCeEEEECCCHHHHHHHHHHHHc--------------C
Confidence 7632 111122223322111 1235999999999999999999876 6
Q ss_pred ceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC---eEEEEeccCCeEEEEeeceEEEccCCCCCc
Q 041537 228 VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK---EITMKIKSTGAVCSIPHGLVLWSTGVGTRP 304 (547)
Q Consensus 228 ~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p 304 (547)
.+|+++++++++++.+++++.+.+.+.|+++ |+++++++|++++.+ .+++.. .+++..++++|.|++|+|. .|
T Consensus 193 ~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~-~~~~~~~i~~D~vi~a~G~--~p 268 (460)
T PRK06292 193 VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELE-KGGKTETIEADYVLVATGR--RP 268 (460)
T ss_pred CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEE-cCCceEEEEeCEEEEccCC--cc
Confidence 8999999999999999999999999999999 999999999999743 355431 2244445999999999994 55
Q ss_pred chHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 305 AIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 305 ~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
++..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 269 ~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~ 309 (460)
T PRK06292 269 NTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNG 309 (460)
T ss_pred CCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCC
Confidence 55433 345555 56789999999999 9999999999975
No 39
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.7e-33 Score=304.86 Aligned_cols=266 Identities=18% Similarity=0.272 Sum_probs=191.9
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhh-------------------hh--ccc------cCc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPS-------------------VT--CGT------VEA 79 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~-------------------~~--~g~------~~~ 79 (547)
..+||||||||+||+++|..|++.|.+|+|||++ .++++.+... .. .|. .+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3589999999999999999999999999999987 4544321110 00 011 111
Q ss_pred cccchh------------HHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCC
Q 041537 80 RSIAEP------------VRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGT 147 (547)
Q Consensus 80 ~~~~~~------------~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~i 147 (547)
..+... +..++... ..+++++++++.+|+....|.+.+ |+ ...+.||+||||||++|..|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~v~~~~----g~-~~~~~~d~lviAtGs~p~~p~i 249 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGN-PAITVLHGEARFKDDQTLIVRLND----GG-ERVVAFDRCLIATGASPAVPPI 249 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcc-CCeEEEEEEEEEecCCEEEEEeCC----Cc-eEEEEcCEEEEcCCCCCCCCCC
Confidence 111111 11223333 138899999999987654554433 32 2379999999999999999999
Q ss_pred CCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCC
Q 041537 148 PGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDL 227 (547)
Q Consensus 148 pG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~ 227 (547)
||+++.. .+ +..++.. . . ...++++|||+|++|+|+|..|.++ +
T Consensus 250 ~g~~~~~-~~-~~~~~~~----------~---~-------~~~~~vvViGgG~ig~E~A~~l~~~--------------g 293 (561)
T PRK13748 250 PGLKETP-YW-TSTEALV----------S---D-------TIPERLAVIGSSVVALELAQAFARL--------------G 293 (561)
T ss_pred CCCCccc-eE-ccHHHhh----------c---c-------cCCCeEEEECCCHHHHHHHHHHHHc--------------C
Confidence 9975421 12 2111111 0 0 1235999999999999999999876 6
Q ss_pred ceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCcc
Q 041537 228 VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305 (547)
Q Consensus 228 ~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~ 305 (547)
.+|+++++. .+++.+++++.+.+.+.|++.||++++++.|++++. +.+.+.. .++ . +++|.||||+|. .|+
T Consensus 294 ~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~-~~~-~--i~~D~vi~a~G~--~pn 366 (561)
T PRK13748 294 SKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTT-GHG-E--LRADKLLVATGR--APN 366 (561)
T ss_pred CEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEe-cCC-e--EEeCEEEEccCC--CcC
Confidence 799999984 577888999999999999999999999999999964 3344433 223 3 999999999995 555
Q ss_pred hHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 306 IKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 306 ~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 367 ~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~ 406 (561)
T PRK13748 367 TRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTD 406 (561)
T ss_pred CCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCC
Confidence 5433 345565 67789999999999 9999999999986
No 40
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.4e-32 Score=289.19 Aligned_cols=263 Identities=21% Similarity=0.304 Sum_probs=186.7
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC--------CCccCCCh----hh-----h------------hcc---
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN--------YFAFTPLL----PS-----V------------TCG--- 75 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~--------~~~~~p~l----~~-----~------------~~g--- 75 (547)
++||+||||||||++||.+|++.|.+|+|||+.. .++++.+. |. . ..|
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999631 23443211 10 0 001
Q ss_pred --ccCccccchhHHHH-----------HHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc
Q 041537 76 --TVEARSIAEPVRNI-----------IKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV 142 (547)
Q Consensus 76 --~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~ 142 (547)
..+..++....+.. ++.. .++++++++...+ .++|.+.+. + ....+.||+||||||+.|
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~v~~i~g~a~~~~--~~~v~v~~~---~-~~~~i~~d~lIIATGs~p 156 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSS--KVEYINGLAKLKD--EHTVSYGDN---S-QEETITAKYILIATGGRP 156 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhc--CcEEEEEEEEEcc--CCEEEEeeC---C-CceEEECCEEEEecCCCC
Confidence 11222222222222 2223 3788899888765 456766431 1 123799999999999999
Q ss_pred cCCC-CCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhC
Q 041537 143 NTFG-TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLY 221 (547)
Q Consensus 143 ~~~~-ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~ 221 (547)
..|. +||..+... +.+++..+. ...++++|||+|++|+|+|..|..+
T Consensus 157 ~~p~~i~G~~~~~~---~~~~~~~~~--------------------~~~~~vvIIGgG~iG~E~A~~l~~~--------- 204 (499)
T PTZ00052 157 SIPEDVPGAKEYSI---TSDDIFSLS--------------------KDPGKTLIVGASYIGLETAGFLNEL--------- 204 (499)
T ss_pred CCCCCCCCccceee---cHHHHhhhh--------------------cCCCeEEEECCCHHHHHHHHHHHHc---------
Confidence 8874 898754322 222221110 1234899999999999999999986
Q ss_pred CCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccC
Q 041537 222 PTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTG 299 (547)
Q Consensus 222 ~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G 299 (547)
+.+|+++++ +.+++.+++++.+.+.+.|+++||++++++.+.+++. +.+.+.. .+|+. +++|.|+|++|
T Consensus 205 -----G~~Vtli~~-~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~-~~g~~--i~~D~vl~a~G 275 (499)
T PTZ00052 205 -----GFDVTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLF-SDGTT--ELFDTVLYATG 275 (499)
T ss_pred -----CCcEEEEEc-CcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEE-CCCCE--EEcCEEEEeeC
Confidence 689999987 4678999999999999999999999999999988864 3344432 34664 89999999999
Q ss_pred CCCCcchHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 300 VGTRPAIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 300 ~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
. .|+++.+ ++.+++ +.+|++.+++. +| +.|+|||+|||+.
T Consensus 276 ~--~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~ 318 (499)
T PTZ00052 276 R--KPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE 318 (499)
T ss_pred C--CCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC
Confidence 5 5555433 345554 67788777777 87 8999999999985
No 41
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=5.9e-32 Score=274.97 Aligned_cols=294 Identities=16% Similarity=0.160 Sum_probs=207.3
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC---CccCCChhhhhc--cccCccccchhHHHHHHhCCCcEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY---FAFTPLLPSVTC--GTVEARSIAEPVRNIIKKRNAEIQFWE 101 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~---~~~~p~l~~~~~--g~~~~~~~~~~~~~~~~~~~~~v~~~~ 101 (547)
..++|+|||||||||+||..|++.|+++++||.... +.+.+..+.++. .......+...++.....++ .++..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 82 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFE--TEIIF 82 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCC--CEEEe
Confidence 468999999999999999999999999999985422 111121222211 11222334455666666666 45566
Q ss_pred EEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCC
Q 041537 102 AEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPG 181 (547)
Q Consensus 102 ~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 181 (547)
++++.|+..++.+.+... .. .+.||+||+|||+.++.|++||.... ..+.+.......
T Consensus 83 ~~v~~v~~~~~~~~v~~~---~~---~~~~d~vilAtG~~~~~~~i~g~~~~--~~~~v~~~~~~~-------------- 140 (321)
T PRK10262 83 DHINKVDLQNRPFRLTGD---SG---EYTCDALIIATGASARYLGLPSEEAF--KGRGVSACATCD-------------- 140 (321)
T ss_pred eEEEEEEecCCeEEEEec---CC---EEEECEEEECCCCCCCCCCCCCHHHc--CCCcEEEeecCC--------------
Confidence 788889988777666531 12 68999999999999999999985421 111111100000
Q ss_pred CCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcE
Q 041537 182 LSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261 (547)
Q Consensus 182 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~ 261 (547)
.....+++++|||+|++|+|+|..|.++ +.+|+++++.+.+. .++.+.+.+.+.|++.||+
T Consensus 141 ---~~~~~g~~vvVvGgG~~g~e~A~~l~~~--------------~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~ 201 (321)
T PRK10262 141 ---GFFYRNQKVAVIGGGNTAVEEALYLSNI--------------ASEVHLIHRRDGFR--AEKILIKRLMDKVENGNII 201 (321)
T ss_pred ---HHHcCCCEEEEECCCHHHHHHHHHHHhh--------------CCEEEEEEECCccC--CCHHHHHHHHhhccCCCeE
Confidence 0113456999999999999999999976 57999999988753 3466788889999999999
Q ss_pred EEcCceEEEEeCCe-----EEEEecc-CCeEEEEeeceEEEccCCCCCcchHHHHH-HhCCCCCccEEeCC-----CCCc
Q 041537 262 VLTECRVVNVSDKE-----ITMKIKS-TGAVCSIPHGLVLWSTGVGTRPAIKDFME-QIGQGKRRVLATNE-----WLRV 329 (547)
Q Consensus 262 v~~~~~V~~v~~~~-----v~~~~~~-~G~~~~i~~D~vv~a~G~~~~p~~~~l~~-~~~~~~~g~i~Vd~-----~l~~ 329 (547)
+++++.+++++++. +++.+.. .++..++++|.|||++|..+ +. .+.. .+. .++|+|.||+ +++|
T Consensus 202 i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p--~~-~l~~~~l~-~~~g~i~vd~~~~~~~~~t 277 (321)
T PRK10262 202 LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP--NT-AIFEGQLE-LENGYIKVQSGIHGNATQT 277 (321)
T ss_pred EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc--Ch-hHhhcccc-ccCCEEEECCCCccccccc
Confidence 99999999997752 5554421 13334699999999999644 44 2322 233 3468899998 5677
Q ss_pred CCCCCEEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhh
Q 041537 330 KECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLK 392 (547)
Q Consensus 330 ~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (547)
++|+|||+|||+..+. +.+..|+.++..++..++.||+
T Consensus 278 -~~~~VyA~GD~~~~~~------------------------~~~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 278 -SIPGVFAAGDVMDHIY------------------------RQAITSAGTGCMAALDAERYLD 315 (321)
T ss_pred -CCCCEEECeeccCCCc------------------------ceEEEEehhHHHHHHHHHHHHH
Confidence 9999999999997532 2345578888999999998884
No 42
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.2e-31 Score=286.52 Aligned_cols=269 Identities=18% Similarity=0.291 Sum_probs=188.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcC------CCCCccCCCh----hh------------h----h-cccc---
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSP------QNYFAFTPLL----PS------------V----T-CGTV--- 77 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~------~~~~~~~p~l----~~------------~----~-~g~~--- 77 (547)
.+||+|||||+||++||.++++.|.+|+|||+ ...++++... |. . . .|..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 57999999999999999999999999999998 2333332111 11 0 0 0100
Q ss_pred ---Cccccc-----------hhHHHHHHhCCCcEEEEEEEEEEEECC--CCEEEEecCCCCCCceeeeecCEEEEccCCC
Q 041537 78 ---EARSIA-----------EPVRNIIKKRNAEIQFWEAEAIKIDAA--KNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141 (547)
Q Consensus 78 ---~~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~id~~--~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~ 141 (547)
+...+. ..++.+++..+ ++++++++..++.. ..+|.+.... + .+++||+||||||+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~~~~~~v~v~~~~--~---~~~~~d~lViATGs~ 156 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNK--ITVLKGRGSFVGKTDAGYEIKVTGED--E---TVITAKHVIIATGSE 156 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEecCCCCCCEEEEecCC--C---eEEEeCEEEEeCCCC
Confidence 000011 12333444555 88899999888743 4567664311 2 279999999999999
Q ss_pred ccCCC-CCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhh
Q 041537 142 VNTFG-TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINL 220 (547)
Q Consensus 142 ~~~~~-ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~ 220 (547)
|+.++ ++..... +.+.+++..+ . ...++++|||+|++|+|+|..+.++
T Consensus 157 p~~~p~~~~~~~~---~~~~~~~~~~-------------~-------~~~~~vvVvGgG~~g~E~A~~l~~~-------- 205 (475)
T PRK06327 157 PRHLPGVPFDNKI---ILDNTGALNF-------------T-------EVPKKLAVIGAGVIGLELGSVWRRL-------- 205 (475)
T ss_pred CCCCCCCCCCCce---EECcHHHhcc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHc--------
Confidence 86542 2211111 1122221110 0 1235999999999999999988876
Q ss_pred CCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--eEEEEec-cCCeEEEEeeceEEEc
Q 041537 221 YPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK--EITMKIK-STGAVCSIPHGLVLWS 297 (547)
Q Consensus 221 ~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~--~v~~~~~-~~G~~~~i~~D~vv~a 297 (547)
+.+|+++++++++++.+++++.+.+.+.|+++||+++++++|++++.+ .+.+... .+|+..++++|.|++|
T Consensus 206 ------g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a 279 (475)
T PRK06327 206 ------GAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVS 279 (475)
T ss_pred ------CCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEc
Confidence 689999999999999999999999999999999999999999999743 4443321 2244346999999999
Q ss_pred cCCCCCcchHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 298 TGVGTRPAIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 298 ~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+|. .|++..+ .+.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 280 ~G~--~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~ 325 (475)
T PRK06327 280 IGR--VPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVR 325 (475)
T ss_pred cCC--ccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccC
Confidence 995 5555433 345554 67789999999998 8999999999975
No 43
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=8e-32 Score=270.23 Aligned_cols=300 Identities=22% Similarity=0.353 Sum_probs=239.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCC--eEEEEcCCCCCccCC-ChhhhhccccCccccchhHHHHHHhCCCcEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSY--DVQVVSPQNYFAFTP-LLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAE 103 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~Vtlid~~~~~~~~p-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 103 (547)
..+.++|||+|++|..|+.+++..+. +++|+-++.+++|-+ .++....- ..........++++.++++. +..+.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~--~~~~~a~r~~e~Yke~gIe~-~~~t~ 149 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLT--VGEGLAKRTPEFYKEKGIEL-ILGTS 149 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceee--ccccccccChhhHhhcCceE-EEcce
Confidence 46789999999999999999997664 599999888888743 44443321 12334444556778888555 35789
Q ss_pred EEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCCC
Q 041537 104 AIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGL 182 (547)
Q Consensus 104 v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 182 (547)
|+.+|...++|.+.+ |+ .++|++|+||||+.++.+++||.+ ++..++++++++..+-..+.
T Consensus 150 v~~~D~~~K~l~~~~----Ge---~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~----------- 211 (478)
T KOG1336|consen 150 VVKADLASKTLVLGN----GE---TLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQ----------- 211 (478)
T ss_pred eEEeeccccEEEeCC----Cc---eeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhc-----------
Confidence 999999999999987 65 999999999999999999999987 78899999999887666542
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC-cccHHHHHHHHHHHHhCCcE
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN-SFDERISSFAEKKFQRDGIE 261 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-~~~~~~~~~~~~~l~~~GV~ 261 (547)
...+||++|+|+.|+|+|.+|... ..+||+|++.+.+++ .|.+.+.+.+++++++.||+
T Consensus 212 ------~~~~vV~vG~G~ig~Evaa~l~~~--------------~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk 271 (478)
T KOG1336|consen 212 ------LGGKVVCVGGGFIGMEVAAALVSK--------------AKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVK 271 (478)
T ss_pred ------cCceEEEECchHHHHHHHHHHHhc--------------CceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeE
Confidence 245899999999999999999874 689999999999999 58899999999999999999
Q ss_pred EEcCceEEEEeCC---eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCcCCCCCEEEe
Q 041537 262 VLTECRVVNVSDK---EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYAL 338 (547)
Q Consensus 262 v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~Vfai 338 (547)
+++++.+.+++.+ ++.-..+.+|.. ++||+||+.+| ..|++..+.....++.+|+|.||+++|+ ++|||||+
T Consensus 272 ~~~~t~~s~l~~~~~Gev~~V~l~dg~~--l~adlvv~GiG--~~p~t~~~~~g~~~~~~G~i~V~~~f~t-~~~~VyAi 346 (478)
T KOG1336|consen 272 FYLGTVVSSLEGNSDGEVSEVKLKDGKT--LEADLVVVGIG--IKPNTSFLEKGILLDSKGGIKVDEFFQT-SVPNVYAI 346 (478)
T ss_pred EEEecceeecccCCCCcEEEEEeccCCE--eccCeEEEeec--cccccccccccceecccCCEeehhceee-ccCCcccc
Confidence 9999999999653 344444455876 99999999999 5677744432233478999999999999 79999999
Q ss_pred CccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhh
Q 041537 339 GDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQV 387 (547)
Q Consensus 339 GD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (547)
|||+..+...+. .. . .++|+..|+.+++.+-.++
T Consensus 347 GDva~fp~~~~~-------------~~-~-~v~H~~~A~~~g~~av~ai 380 (478)
T KOG1336|consen 347 GDVATFPLKGYG-------------ED-R-RVEHVDHARASGRQAVKAI 380 (478)
T ss_pred cceeeccccccc-------------cc-c-cchHHHHHHHHHHhhhhhh
Confidence 999998753210 01 1 2789999998888654443
No 44
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-31 Score=288.66 Aligned_cols=270 Identities=17% Similarity=0.245 Sum_probs=188.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCC-CCCccCCChhhh---------------h--------ccc-------
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ-NYFAFTPLLPSV---------------T--------CGT------- 76 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~-~~~~~~p~l~~~---------------~--------~g~------- 76 (547)
.+||+|||+|+||+.+|..+++.|.+|+|||+. ..++++.+...+ . .|.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 579999999999999999999999999999974 234443211110 0 010
Q ss_pred -----------------cCccccch-----------hHHHHHHhCCC-----cEEEEEEEEEEEECCCCEEEEecCCCCC
Q 041537 77 -----------------VEARSIAE-----------PVRNIIKKRNA-----EIQFWEAEAIKIDAAKNEVFCKSNIDKE 123 (547)
Q Consensus 77 -----------------~~~~~~~~-----------~~~~~~~~~~~-----~v~~~~~~v~~id~~~~~v~~~~~~~~g 123 (547)
++...+.. .+...++..+. .++++.++...+++. +|.+.. ++
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~--~v~v~~---~g 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKN--TIKSEK---SG 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCC--eEEEcc---CC
Confidence 01111111 12223333321 367888888887754 555432 13
Q ss_pred CceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHH
Q 041537 124 TRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGV 203 (547)
Q Consensus 124 ~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gv 203 (547)
. ++.||+||||||++|..|++++... ..+.+.+++..+.. ..++++|||||++|+
T Consensus 271 ~---~i~ad~lIIATGS~P~~P~~~~~~~--~~V~ts~d~~~l~~--------------------lpk~VvIVGgG~iGv 325 (659)
T PTZ00153 271 K---EFKVKNIIIATGSTPNIPDNIEVDQ--KSVFTSDTAVKLEG--------------------LQNYMGIVGMGIIGL 325 (659)
T ss_pred E---EEECCEEEEcCCCCCCCCCCCCCCC--CcEEehHHhhhhhh--------------------cCCceEEECCCHHHH
Confidence 3 7999999999999998887665432 11234444443221 124999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHH-HhCCcEEEcCceEEEEeCCe----EEE
Q 041537 204 EFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKF-QRDGIEVLTECRVVNVSDKE----ITM 278 (547)
Q Consensus 204 E~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l-~~~GV~v~~~~~V~~v~~~~----v~~ 278 (547)
|+|..+..+ +.+|+++++.++++|.+++++.+.+.+.+ +++||++++++.|++++.+. +.+
T Consensus 326 E~A~~l~~~--------------G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v 391 (659)
T PTZ00153 326 EFMDIYTAL--------------GSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVII 391 (659)
T ss_pred HHHHHHHhC--------------CCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEE
Confidence 999988876 67999999999999999999999999976 67999999999999997532 444
Q ss_pred Eec--c----CC------eEEEEeeceEEEccCCCCCcchHHH-HHHhCC-CCCccEEeCCCCCcCC-----CCCEEEeC
Q 041537 279 KIK--S----TG------AVCSIPHGLVLWSTGVGTRPAIKDF-MEQIGQ-GKRRVLATNEWLRVKE-----CENVYALG 339 (547)
Q Consensus 279 ~~~--~----~G------~~~~i~~D~vv~a~G~~~~p~~~~l-~~~~~~-~~~g~i~Vd~~l~~~~-----~~~VfaiG 339 (547)
... . ++ +..++++|.|+||+| ..|+++.| ++.+++ .++|+|.||++|||.. +|+|||+|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiG 469 (659)
T PTZ00153 392 GHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIG 469 (659)
T ss_pred EEeccccccccccccccccceEEEcCEEEEEEC--cccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEE
Confidence 321 1 11 112499999999999 56666555 455565 3458999999999942 69999999
Q ss_pred ccCc
Q 041537 340 DCAT 343 (547)
Q Consensus 340 D~a~ 343 (547)
||+.
T Consensus 470 Dv~g 473 (659)
T PTZ00153 470 DANG 473 (659)
T ss_pred ecCC
Confidence 9974
No 45
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.3e-31 Score=288.50 Aligned_cols=266 Identities=21% Similarity=0.277 Sum_probs=183.1
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCC-hhhh--hcc--ccCccccchhHHHHHHhCCCcEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPL-LPSV--TCG--TVEARSIAEPVRNIIKKRNAEIQFWE 101 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~-l~~~--~~g--~~~~~~~~~~~~~~~~~~~~~v~~~~ 101 (547)
..++|+|||||||||+||.+|++.|++|+|||++.. ++... .... ..+ .....++...++..++..+ ++++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~g--v~~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFG--VKFLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcC--CEEec
Confidence 358999999999999999999999999999999753 32211 1111 011 1122345566677777777 66778
Q ss_pred EEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCC
Q 041537 102 AEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPG 181 (547)
Q Consensus 102 ~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 181 (547)
++|+.++++++...+... +. .+.||+||||||+.++.|++||..+.. ...+.... .
T Consensus 80 ~~V~~i~~~~~~~~V~~~---~g---~~~a~~lVlATGa~p~~~~ipG~~~~~--~~~v~~~~----------------~ 135 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTA---RG---DYKTLAVLIATGASPRKLGFPGEEEFT--GRGVAYCA----------------T 135 (555)
T ss_pred cEEEEEEecCCEEEEEec---CC---EEEEeEEEECCCCccCCCCCCCHHHhC--CceEEEEe----------------e
Confidence 899999987654333321 22 689999999999999999999964311 00000000 0
Q ss_pred CCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcE
Q 041537 182 LSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIE 261 (547)
Q Consensus 182 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~ 261 (547)
.+ .....+++|+|||||++|+|+|..|.++ +.+|+++++++.+.. +... ..+.++.+||+
T Consensus 136 ~~-~~~~~g~~VvVIGgG~~g~E~A~~L~~~--------------g~~Vtli~~~~~~~~--~~~~---~~~~~~~~gV~ 195 (555)
T TIGR03143 136 CD-GEFFTGMDVFVIGGGFAAAEEAVFLTRY--------------ASKVTVIVREPDFTC--AKLI---AEKVKNHPKIE 195 (555)
T ss_pred cC-hhhcCCCEEEEECCCHHHHHHHHHHHcc--------------CCEEEEEEeCCcccc--CHHH---HHHHHhCCCcE
Confidence 00 0113467999999999999999998765 679999999887532 2222 23334557999
Q ss_pred EEcCceEEEEeCCe-E---EEEeccCCeEEEE--eece----EEEccCCCCCcchHHHHH-HhCCCCCccEEeCCCCCcC
Q 041537 262 VLTECRVVNVSDKE-I---TMKIKSTGAVCSI--PHGL----VLWSTGVGTRPAIKDFME-QIGQGKRRVLATNEWLRVK 330 (547)
Q Consensus 262 v~~~~~V~~v~~~~-v---~~~~~~~G~~~~i--~~D~----vv~a~G~~~~p~~~~l~~-~~~~~~~g~i~Vd~~l~~~ 330 (547)
+++++.|+++.++. + .+.+..+|+..++ ++|. |+|++|.. |+.. +.. .+.++.+|+|.||+++||
T Consensus 196 i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~--Pn~~-l~~~~l~l~~~G~I~vd~~~~T- 271 (555)
T TIGR03143 196 VKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYA--PSSE-LFKGVVELDKRGYIPTNEDMET- 271 (555)
T ss_pred EEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCC--CChh-HHhhhcccCCCCeEEeCCcccc-
Confidence 99999999997653 2 2333344654333 4776 99999964 5443 333 234467899999999999
Q ss_pred CCCCEEEeCccCc
Q 041537 331 ECENVYALGDCAT 343 (547)
Q Consensus 331 ~~~~VfaiGD~a~ 343 (547)
+.|+|||+|||+.
T Consensus 272 s~p~IyAaGDv~~ 284 (555)
T TIGR03143 272 NVPGVYAAGDLRP 284 (555)
T ss_pred CCCCEEEceeccC
Confidence 8999999999974
No 46
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.2e-30 Score=276.74 Aligned_cols=261 Identities=20% Similarity=0.263 Sum_probs=184.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhh--------------------hccc------cCccc
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSV--------------------TCGT------VEARS 81 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~--------------------~~g~------~~~~~ 81 (547)
.+||||||+|+||..+|..+ .|.+|+|||++. ++++.+...+ ..|. .+...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 47999999999999997665 599999999853 4443211110 0010 11111
Q ss_pred cchh--------HH----HH-HHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCC
Q 041537 82 IAEP--------VR----NI-IKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTP 148 (547)
Q Consensus 82 ~~~~--------~~----~~-~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ip 148 (547)
+... ++ .. +.....++++++++....+ .++|.+.+ |. ++.||+||||||++|..|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~V~~~~----g~---~~~~d~lIiATGs~p~~p~~~ 149 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVG--PRTLRTGD----GE---EITGDQIVIAAGSRPYIPPAI 149 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEec--CCEEEECC----Cc---EEEeCEEEEEECCCCCCCCCC
Confidence 1111 11 11 1110024888888887775 56787754 43 799999999999999877643
Q ss_pred CccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCc
Q 041537 149 GVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLV 228 (547)
Q Consensus 149 G~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~ 228 (547)
+. ....+.+.+++.++.+ ..++++|||+|++|+|+|..|.++ +.
T Consensus 150 ~~--~~~~~~~~~~~~~l~~--------------------~~k~vvVIGgG~ig~E~A~~l~~~--------------G~ 193 (452)
T TIGR03452 150 AD--SGVRYHTNEDIMRLPE--------------------LPESLVIVGGGYIAAEFAHVFSAL--------------GT 193 (452)
T ss_pred CC--CCCEEEcHHHHHhhhh--------------------cCCcEEEECCCHHHHHHHHHHHhC--------------CC
Confidence 32 2223566666655432 124999999999999999999875 68
Q ss_pred eEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCcch
Q 041537 229 RITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAI 306 (547)
Q Consensus 229 ~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~ 306 (547)
+|+++++.+++++.+++++.+.+.+.+ +.||++++++.|++++. +.+.+.. .+|+. +++|.|++|+|. .|+.
T Consensus 194 ~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~-~~g~~--i~~D~vl~a~G~--~pn~ 267 (452)
T TIGR03452 194 RVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTL-DDGST--VTADVLLVATGR--VPNG 267 (452)
T ss_pred cEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEE-cCCCE--EEcCEEEEeecc--CcCC
Confidence 999999999999999999988887655 46899999999999973 4455443 34654 999999999995 5555
Q ss_pred HHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 307 KDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 307 ~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+.+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 268 ~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 306 (452)
T TIGR03452 268 DLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSS 306 (452)
T ss_pred CCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccC
Confidence 333 344555 57789999999997 9999999999975
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.98 E-value=2.8e-31 Score=281.06 Aligned_cols=272 Identities=17% Similarity=0.206 Sum_probs=178.3
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEE
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEA 104 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 104 (547)
+.+.++|+|||||+|||++|..|++.|++|+|||+++..++.. .+.+....+ +.++.....+.+.+.+ +++..+.+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l-~~gip~~~~-~~~~~~~~~~~l~~~g--v~~~~~~~ 205 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV-TYGIPEFRL-PKEIVVTEIKTLKKLG--VTFRMNFL 205 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe-eecCCCccC-CHHHHHHHHHHHHhCC--cEEEeCCc
Confidence 3556899999999999999999999999999999987654321 122221122 2334444445566677 66655543
Q ss_pred EEEECCCCEEEEecCCCCCCceeeeecCEEEEccCC-CccCCCCCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCCC
Q 041537 105 IKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA-QVNTFGTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGL 182 (547)
Q Consensus 105 ~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~-~~~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 182 (547)
. .+.+.+.+ . ...||+||||||+ .|..+++||.+ ++++ +..+...... +....+ .+..
T Consensus 206 v-----~~~v~~~~----~----~~~yd~viiAtGa~~p~~~~ipG~~~~gv~---~~~~~l~~~~-~~~~~~---~~~~ 265 (449)
T TIGR01316 206 V-----GKTATLEE----L----FSQYDAVFIGTGAGLPKLMNIPGEELCGVY---SANDFLTRAN-LMKAYE---FPHA 265 (449)
T ss_pred c-----CCcCCHHH----H----HhhCCEEEEeCCCCCCCcCCCCCCCCCCcE---EHHHHHHHHh-hccccc---cccc
Confidence 2 23344432 1 3579999999998 68888899864 2222 2222111100 100000 0000
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEE
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
......+++|+|||||++|+|+|..+.++ +.+|+++++.++.- ++ ......+.+++.||++
T Consensus 266 -~~~~~~gk~VvVIGgG~~a~d~A~~l~~~--------------G~~Vtlv~~~~~~~--~~--~~~~~~~~l~~~GV~~ 326 (449)
T TIGR01316 266 -DTPVYAGKSVVVIGGGNTAVDSARTALRL--------------GAEVHCLYRRTRED--MT--ARVEEIAHAEEEGVKF 326 (449)
T ss_pred -CCcccCCCeEEEECCCHHHHHHHHHHHHc--------------CCEEEEEeecCccc--CC--CCHHHHHHHHhCCCEE
Confidence 00113467999999999999999999886 67899999886521 11 1122346678899999
Q ss_pred EcCceEEEEeC---CeE---EEEec------cC---------CeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCc
Q 041537 263 LTECRVVNVSD---KEI---TMKIK------ST---------GAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRR 319 (547)
Q Consensus 263 ~~~~~V~~v~~---~~v---~~~~~------~~---------G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g 319 (547)
++++.++++.. +.+ ++... .+ |+..++++|+||+|+|..+ +. .+++..++ +.+|
T Consensus 327 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p--~~-~~l~~~gl~~~~~G 403 (449)
T TIGR01316 327 HFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGS--NP-IMAETTRLKTSERG 403 (449)
T ss_pred EeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCC--Cc-hhhhccCcccCCCC
Confidence 99999999853 223 33210 11 3334699999999999644 43 35555554 6678
Q ss_pred cEEeCCCCCcCCCCCEEEeCccCc
Q 041537 320 VLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 320 ~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+|.||++++| +.|+|||+|||+.
T Consensus 404 ~i~vd~~~~T-s~~~VfA~GD~~~ 426 (449)
T TIGR01316 404 TIVVDEDQRT-SIPGVFAGGDIIL 426 (449)
T ss_pred eEEeCCCCcc-CCCCEEEecCCCC
Confidence 9999999998 8999999999975
No 48
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.98 E-value=8e-31 Score=282.24 Aligned_cols=293 Identities=16% Similarity=0.233 Sum_probs=203.4
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCC----hhhhhc-cccCccccchhHHHHHHhCCCcEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPL----LPSVTC-GTVEARSIAEPVRNIIKKRNAEIQFW 100 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~----l~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (547)
...++|+|||||+||++||.+|++.|++|+||++. +++++. ++.+.. ......++...+.+.++.+++++. .
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~-~ 286 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM-E 286 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE-c
Confidence 44689999999999999999999999999999853 333321 111110 012234455667777777774432 3
Q ss_pred EEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCC
Q 041537 101 EAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLP 180 (547)
Q Consensus 101 ~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 180 (547)
..+|+.++.+.+.+.+... ++. .+.||+||+|||+.++.+++||..++. ...+.....
T Consensus 287 ~~~V~~I~~~~~~~~v~~~--~g~---~i~~d~lIlAtGa~~~~~~ipG~~~~~--~~~v~~~~~--------------- 344 (515)
T TIGR03140 287 NQRAKKIETEDGLIVVTLE--SGE---VLKAKSVIVATGARWRKLGVPGEKEYI--GKGVAYCPH--------------- 344 (515)
T ss_pred CCEEEEEEecCCeEEEEEC--CCC---EEEeCEEEECCCCCcCCCCCCCHHHcC--CCeEEEeec---------------
Confidence 4688989876654333221 143 799999999999999989999864321 000000000
Q ss_pred CCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHh-CC
Q 041537 181 GLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQR-DG 259 (547)
Q Consensus 181 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~-~G 259 (547)
.. .....+++|+|||||++|+|+|..|+.+ +.+|+++++.+.++. ...+.+.|++ .|
T Consensus 345 -~~-~~~~~~k~VvViGgG~~g~E~A~~L~~~--------------g~~Vtli~~~~~l~~------~~~l~~~l~~~~g 402 (515)
T TIGR03140 345 -CD-GPFFKGKDVAVIGGGNSGIEAAIDLAGI--------------VRHVTVLEFADELKA------DKVLQDKLKSLPN 402 (515)
T ss_pred -cC-hhhcCCCEEEEECCcHHHHHHHHHHHhc--------------CcEEEEEEeCCcCCh------hHHHHHHHhcCCC
Confidence 00 0112456999999999999999999876 579999998887642 2345667776 59
Q ss_pred cEEEcCceEEEEeCC-----eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCcCCCCC
Q 041537 260 IEVLTECRVVNVSDK-----EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECEN 334 (547)
Q Consensus 260 V~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~ 334 (547)
|++++++.|++++++ .+.+.+..+|+..+++||.|+|++|. .|++..+...+.++.+|+|.||+++|| +.|+
T Consensus 403 V~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~--~Pn~~~l~~~~~~~~~G~I~vd~~~~T-s~p~ 479 (515)
T TIGR03140 403 VDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL--VPNTEWLKDAVELNRRGEIVIDERGRT-SVPG 479 (515)
T ss_pred CEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC--cCCchHHhhhcccCCCCeEEECCCCCC-CCCC
Confidence 999999999999765 25555433354446999999999995 455533322233467789999999999 9999
Q ss_pred EEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhh
Q 041537 335 VYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLK 392 (547)
Q Consensus 335 VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (547)
|||+|||+..+.. .+..|+.++..++-++..|+.
T Consensus 480 IyAaGDv~~~~~~------------------------~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 480 IFAAGDVTTVPYK------------------------QIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred EEEcccccCCccc------------------------eEEEEEccHHHHHHHHHHHHh
Confidence 9999999986532 245677888888888887773
No 49
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.98 E-value=9.2e-31 Score=278.42 Aligned_cols=267 Identities=17% Similarity=0.242 Sum_probs=178.1
Q ss_pred CCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEE
Q 041537 24 KEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAE 103 (547)
Q Consensus 24 ~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 103 (547)
++...++|+|||||+|||++|..|++.|++|+|||+++.++... .+.++ ....+.++.......+...+ +++..+.
T Consensus 136 ~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l-~~gip-~~~~~~~~~~~~~~~l~~~g--v~~~~~~ 211 (457)
T PRK11749 136 APKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL-RYGIP-EFRLPKDIVDREVERLLKLG--VEIRTNT 211 (457)
T ss_pred CccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe-eccCC-CccCCHHHHHHHHHHHHHcC--CEEEeCC
Confidence 34567899999999999999999999999999999988764321 11111 11123345555666777777 5555444
Q ss_pred EEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC-ccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCC
Q 041537 104 AIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGL 182 (547)
Q Consensus 104 v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~-~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 182 (547)
.. .+.+.+.+ . .+.||+||+|||+. ++.+++||.+. ..+..+..+........ ..
T Consensus 212 ~v-----~~~v~~~~-----~---~~~~d~vvlAtGa~~~~~~~i~G~~~-----~gv~~~~~~l~~~~~~~---~~--- 267 (457)
T PRK11749 212 EV-----GRDITLDE-----L---RAGYDAVFIGTGAGLPRFLGIPGENL-----GGVYSAVDFLTRVNQAV---AD--- 267 (457)
T ss_pred EE-----CCccCHHH-----H---HhhCCEEEEccCCCCCCCCCCCCccC-----CCcEEHHHHHHHHhhcc---cc---
Confidence 32 12233222 1 47899999999996 67778888642 11112222222211100 00
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCc-eEEEEecCCc-cCCcccHHHHHHHHHHHHhCCc
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLV-RITLIQSGDH-ILNSFDERISSFAEKKFQRDGI 260 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~-il~~~~~~~~~~~~~~l~~~GV 260 (547)
.....+++|+|||||++|+|+|..+.++ +. +|+++++.+. .++.... ..+.+++.||
T Consensus 268 --~~~~~g~~VvViGgG~~g~e~A~~l~~~--------------G~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV 326 (457)
T PRK11749 268 --YDLPVGKRVVVIGGGNTAMDAARTAKRL--------------GAESVTIVYRRGREEMPASEE-----EVEHAKEEGV 326 (457)
T ss_pred --ccCCCCCeEEEECCCHHHHHHHHHHHHc--------------CCCeEEEeeecCcccCCCCHH-----HHHHHHHCCC
Confidence 0112467999999999999999999876 34 8999998764 3444322 2466788999
Q ss_pred EEEcCceEEEEeCCe-----EEEEecc--------------CCeEEEEeeceEEEccCCCCCcchHHHHH-H--hCCCCC
Q 041537 261 EVLTECRVVNVSDKE-----ITMKIKS--------------TGAVCSIPHGLVLWSTGVGTRPAIKDFME-Q--IGQGKR 318 (547)
Q Consensus 261 ~v~~~~~V~~v~~~~-----v~~~~~~--------------~G~~~~i~~D~vv~a~G~~~~p~~~~l~~-~--~~~~~~ 318 (547)
++++++.+.++.++. +++.... +|+..++++|+||||+|..+.. .+.. . +.++.+
T Consensus 327 ~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~---~l~~~~~gl~~~~~ 403 (457)
T PRK11749 327 EFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP---LILSTTPGLELNRW 403 (457)
T ss_pred EEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc---hhhccccCccCCCC
Confidence 999999999996543 5554210 2444469999999999965543 3322 2 334678
Q ss_pred ccEEeCC-CCCcCCCCCEEEeCccCc
Q 041537 319 RVLATNE-WLRVKECENVYALGDCAT 343 (547)
Q Consensus 319 g~i~Vd~-~l~~~~~~~VfaiGD~a~ 343 (547)
|+|.||+ +++| +.|+|||+|||+.
T Consensus 404 g~i~vd~~~~~T-s~~~VfA~GD~~~ 428 (457)
T PRK11749 404 GTIIADDETGRT-SLPGVFAGGDIVT 428 (457)
T ss_pred CCEEeCCCCCcc-CCCCEEEeCCcCC
Confidence 9999998 7787 8999999999984
No 50
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=6.7e-31 Score=278.62 Aligned_cols=273 Identities=18% Similarity=0.198 Sum_probs=177.1
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEE
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEA 104 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 104 (547)
+.+.++|+|||||+|||++|.+|++.|++|+|+|+++..++.. .+.++...+..+.+.....+.+++.+ +++..+..
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l-~~gip~~~l~~~~~~~~~~~~~~~~g--v~i~~~~~ 213 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVL-VYGIPEFRLPKETVVKKEIENIKKLG--VKIETNVV 213 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCee-eecCCCccCCccHHHHHHHHHHHHcC--CEEEcCCE
Confidence 4567899999999999999999999999999999987654322 12222112222335555556677777 55544432
Q ss_pred EEEECCCCEEEEecCCCCCCceeeeecCEEEEccCC-CccCCCCCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCCC
Q 041537 105 IKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA-QVNTFGTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGL 182 (547)
Q Consensus 105 ~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~-~~~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 182 (547)
. .+.+.+++ .. ..+.||+||||||+ .++.+++||.+ ++++ +..+.+...+.... . ....
T Consensus 214 v-----~~~v~~~~----~~--~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~---~~~~~l~~~~~~~~-~----~~~~ 274 (464)
T PRK12831 214 V-----GKTVTIDE----LL--EEEGFDAVFIGSGAGLPKFMGIPGENLNGVF---SANEFLTRVNLMKA-Y----KPEY 274 (464)
T ss_pred E-----CCcCCHHH----HH--hccCCCEEEEeCCCCCCCCCCCCCcCCcCcE---EHHHHHHHHHhccc-c----cccc
Confidence 2 12333322 10 14679999999999 58889999975 2332 22222211110000 0 0000
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCc-cCCcccHHHHHHHHHHHHhCCcE
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH-ILNSFDERISSFAEKKFQRDGIE 261 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~l~~~GV~ 261 (547)
......+++|+|||||++|+|+|..+.++ +.+|+++++.+. -++....+ .+.+++.||+
T Consensus 275 -~~~~~~gk~VvVIGgG~va~d~A~~l~r~--------------Ga~Vtlv~r~~~~~m~a~~~e-----~~~a~~eGV~ 334 (464)
T PRK12831 275 -DTPIKVGKKVAVVGGGNVAMDAARTALRL--------------GAEVHIVYRRSEEELPARVEE-----VHHAKEEGVI 334 (464)
T ss_pred -cCcccCCCeEEEECCcHHHHHHHHHHHHc--------------CCEEEEEeecCcccCCCCHHH-----HHHHHHcCCE
Confidence 00113567999999999999999999987 578999998764 23332222 1345778999
Q ss_pred EEcCceEEEEeC--C-e---EEEEec------c---------CCeEEEEeeceEEEccCCCCCcchHHHHHH-hCC--CC
Q 041537 262 VLTECRVVNVSD--K-E---ITMKIK------S---------TGAVCSIPHGLVLWSTGVGTRPAIKDFMEQ-IGQ--GK 317 (547)
Q Consensus 262 v~~~~~V~~v~~--~-~---v~~~~~------~---------~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~-~~~--~~ 317 (547)
+++++.++++.. + . +.+... . +|+..++++|+||+|+|.. |+. .+... .++ +.
T Consensus 335 i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~--p~~-~~~~~~~gl~~~~ 411 (464)
T PRK12831 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTS--PNP-LISSTTKGLKINK 411 (464)
T ss_pred EEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCC--CCh-hhhcccCCceECC
Confidence 999999999853 2 2 233210 0 2444469999999999964 444 34333 344 66
Q ss_pred CccEEeCCC-CCcCCCCCEEEeCccCc
Q 041537 318 RRVLATNEW-LRVKECENVYALGDCAT 343 (547)
Q Consensus 318 ~g~i~Vd~~-l~~~~~~~VfaiGD~a~ 343 (547)
+|+|.||++ ++| +.|+|||+|||+.
T Consensus 412 ~G~i~vd~~~~~T-s~pgVfAaGD~~~ 437 (464)
T PRK12831 412 RGCIVADEETGLT-SKEGVFAGGDAVT 437 (464)
T ss_pred CCcEEECCCCCcc-CCCCEEEeCCCCC
Confidence 789999997 888 9999999999975
No 51
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=3.9e-30 Score=287.50 Aligned_cols=320 Identities=18% Similarity=0.174 Sum_probs=210.7
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
.+.++|+|||||||||+||++|++.|++|||+|+++..++... +.++... .+.+......+.+...+ +++..+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~-~~IP~~r-lp~e~l~~~ie~l~~~G--Ve~~~g~-- 608 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK-NIIPEFR-ISAESIQKDIELVKFHG--VEFKYGC-- 608 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee-ecccccC-CCHHHHHHHHHHHHhcC--cEEEEec--
Confidence 4568999999999999999999999999999999887654321 1111111 22333333345556667 5554442
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc-cCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCH
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV-NTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~-~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 184 (547)
++ .+.+.. . ....||+||||||+.+ ..+++||..+++ +..++... .+.+. .
T Consensus 609 --~~---d~~ve~----l---~~~gYDaVIIATGA~~~~~l~I~G~~~~v--~~avefL~----~~~~~----------~ 660 (1012)
T TIGR03315 609 --SP---DLTVAE----L---KNQGYKYVILAIGAWKHGPLRLEGGGERV--LKSLEFLR----AFKEG----------P 660 (1012)
T ss_pred --cc---ceEhhh----h---hcccccEEEECCCCCCCCCCCcCCCCcce--eeHHHHHH----Hhhcc----------c
Confidence 11 122222 1 1567999999999984 455777754322 22222211 11110 0
Q ss_pred HHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCC-ceEEEEecCC-ccCCcccHHHHHHHHHHHHhCCcEE
Q 041537 185 EERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDL-VRITLIQSGD-HILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 185 ~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~-~~V~lv~~~~-~il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
.....+++|+|||||++|+|+|..+.++ .+ .+|+++++.+ ..+|..++++.+ +.+.||++
T Consensus 661 ~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl-------------~Ga~kVtLVyRr~~~~Mpa~~eEl~~-----aleeGVe~ 722 (1012)
T TIGR03315 661 TINPLGKHVVVVGGGNTAMDAARAALRV-------------PGVEKVTVVYRRTKRYMPASREELEE-----ALEDGVDF 722 (1012)
T ss_pred cccccCCeEEEECCCHHHHHHHHHHHHh-------------CCCceEEEEEccCccccccCHHHHHH-----HHHcCCEE
Confidence 0113467999999999999999987764 13 3899999876 456665544432 23579999
Q ss_pred EcCceEEEEeCCeEEEEe--------------ccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccEEeCCC
Q 041537 263 LTECRVVNVSDKEITMKI--------------KSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATNEW 326 (547)
Q Consensus 263 ~~~~~V~~v~~~~v~~~~--------------~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~ 326 (547)
+++..+.+++++.+++.. ..+|+..+++||+||+|+|.. |+. .+++.+++ +.+|++.||++
T Consensus 723 ~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~--Pnt-~lle~~GL~ld~~G~I~VD~~ 799 (1012)
T TIGR03315 723 KELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ--VDT-DLLQKNGIPLDEYGWPVVNQA 799 (1012)
T ss_pred EeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc--CCh-HHHHhcCcccCCCCCEEeCCC
Confidence 999999988866554421 113555579999999999964 444 35556665 67789999986
Q ss_pred -CCcCCCCCEEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhhcccccccccccCC
Q 041537 327 -LRVKECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLNDVTDLLKD 405 (547)
Q Consensus 327 -l~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (547)
+++ +.|+|||+|||+..
T Consensus 800 ~~~T-s~pgVFAaGD~a~G------------------------------------------------------------- 817 (1012)
T TIGR03315 800 TGET-NITNVFVIGDANRG------------------------------------------------------------- 817 (1012)
T ss_pred CCcc-CCCCEEEEeCcCCC-------------------------------------------------------------
Confidence 777 89999999999752
Q ss_pred CCCCCCcccchhhhhhhhccccccCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCCCCccccCCCCCCCCCCeeccccc
Q 041537 406 PQGNPRREVDIEGFTLALSHVDTQMKSLPATAQVAAQQGAYLARNFNRRQQCKEHPEGPRRFRGLGRHHFRPFRYKHFGQ 485 (547)
Q Consensus 406 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~aq~A~~qg~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~G~ 485 (547)
|.++..|++||+.+|.+|.+....+......-.+ ......+|.|..+|.
T Consensus 818 ----------------------------P~tVv~AIaqGr~AA~nIl~~~~~~~~~~~~~~~---~~~~~~~~~Y~~kG~ 866 (1012)
T TIGR03315 818 ----------------------------PATIVEAIADGRKAANAILSREGLNSDVDKVFPI---NEEVRLAEVYQKKGI 866 (1012)
T ss_pred ----------------------------ccHHHHHHHHHHHHHHHHhccccCCccccccccc---ccccccchhhccCcc
Confidence 5678899999999999997654332211000000 012345899999999
Q ss_pred eEEccCcc
Q 041537 486 FAPLGGEQ 493 (547)
Q Consensus 486 ~~~lG~~~ 493 (547)
|+..+...
T Consensus 867 la~~~~~~ 874 (1012)
T TIGR03315 867 LVIDDHSC 874 (1012)
T ss_pred eeccCccc
Confidence 99876544
No 52
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.97 E-value=3.9e-31 Score=255.88 Aligned_cols=273 Identities=20% Similarity=0.285 Sum_probs=209.4
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChh---------------hhhcc------ccCc------
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLP---------------SVTCG------TVEA------ 79 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~---------------~~~~g------~~~~------ 79 (547)
..+||+|||+||+|..||...++.|++.++||++...+++.+-- ..+.. .++.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 46899999999999999999999999999999988776642111 11100 0110
Q ss_pred ------------cccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCC
Q 041537 80 ------------RSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGT 147 (547)
Q Consensus 80 ------------~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~i 147 (547)
.++...+..++++.+ |.++.+....++|..-++.-.+ |+ .+.+...++||||||.- +++
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknk--V~~~kG~gsf~~p~~V~v~k~d----g~-~~ii~aKnIiiATGSeV--~~~ 188 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNK--VTYVKGFGSFLDPNKVSVKKID----GE-DQIIKAKNIIIATGSEV--TPF 188 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcC--eEEEeeeEeecCCceEEEeccC----CC-ceEEeeeeEEEEeCCcc--CCC
Confidence 112233556666665 8889999999998854554443 32 46899999999999953 234
Q ss_pred CCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCC
Q 041537 148 PGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDL 227 (547)
Q Consensus 148 pG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~ 227 (547)
||+.-.-- .+.++....++..+|. +++|||+|.+|+|++....++ +
T Consensus 189 PGI~IDek-------------kIVSStgALsL~~vPk-------~~~viG~G~IGLE~gsV~~rL--------------G 234 (506)
T KOG1335|consen 189 PGITIDEK-------------KIVSSTGALSLKEVPK-------KLTVIGAGYIGLEMGSVWSRL--------------G 234 (506)
T ss_pred CCeEecCc-------------eEEecCCccchhhCcc-------eEEEEcCceeeeehhhHHHhc--------------C
Confidence 56531100 1112222222333343 999999999999999999988 7
Q ss_pred ceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCe-----EEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 228 VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKE-----ITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 228 ~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~-----v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
.+||+|+..+.+.+.+|.++++.+++.|+++|++++++++|..++.++ +.+.+..++++.+++||.+++++| +
T Consensus 235 seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG--R 312 (506)
T KOG1335|consen 235 SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG--R 312 (506)
T ss_pred CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc--C
Confidence 899999999999999999999999999999999999999999986532 556666678777899999999999 8
Q ss_pred CcchHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCccC
Q 041537 303 RPAIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCATID 345 (547)
Q Consensus 303 ~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 345 (547)
+|.++.| ++++|+ |.+|++.||.++++ .+|+||+||||...|
T Consensus 313 rP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~gp 357 (506)
T KOG1335|consen 313 RPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTLGP 357 (506)
T ss_pred cccccCCChhhcccccccccceeccccccc-cCCceEEecccCCcc
Confidence 9999888 677777 78899999999999 899999999998754
No 53
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=8.9e-30 Score=283.09 Aligned_cols=262 Identities=18% Similarity=0.219 Sum_probs=175.2
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
.+.++|+|||||+|||+||.+|++.|++|+|+|+++..++.. ....++...+.++.....+++...+ +++..+...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~l--r~~IP~~Rlp~evL~~die~l~~~G--Ve~~~gt~V 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVV--KNIIPQFRIPAELIQHDIEFVKAHG--VKFEFGCSP 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcce--eeecccccccHHHHHHHHHHHHHcC--CEEEeCcee
Confidence 467899999999999999999999999999999988765432 1222222223344444445666677 555444322
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc-cCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCH
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV-NTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~-~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 184 (547)
.+ .+++ . ....||+||||||+++ ..+++||..++++ ..++....+++ . .
T Consensus 613 di-------~le~----L---~~~gYDaVILATGA~~~~~l~IpG~~~gV~--saldfL~~~k~----~----------~ 662 (1019)
T PRK09853 613 DL-------TVEQ----L---KNEGYDYVVVAIGADKNGGLKLEGGNQNVI--KALPFLEEYKN----K----------G 662 (1019)
T ss_pred EE-------Ehhh----h---eeccCCEEEECcCCCCCCCCCCCCccCCce--ehHHHHHHHhh----h----------c
Confidence 22 2222 1 1567999999999984 5567888654332 12211111110 0 0
Q ss_pred HHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCC-ceEEEEecCC-ccCCcccHHHHHHHHHHHHhCCcEE
Q 041537 185 EERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDL-VRITLIQSGD-HILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 185 ~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~-~~V~lv~~~~-~il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
.....+++|||||||++|+|+|..+.++. + .+|+++.+.+ ..+|..++++.+. .+.||++
T Consensus 663 ~~~~~GKrVVVIGGGnVAmD~Ar~a~Rlg-------------GakeVTLVyRr~~~~MPA~~eEle~A-----leeGVe~ 724 (1019)
T PRK09853 663 TALKLGKHVVVVGGGNTAMDAARAALRVP-------------GVEKVTVVYRRTKQEMPAWREEYEEA-----LEDGVEF 724 (1019)
T ss_pred ccccCCCEEEEECCChHHHHHHHHHHhcC-------------CCceEEEEEccCcccccccHHHHHHH-----HHcCCEE
Confidence 01134679999999999999999877652 2 4899999876 4566655444322 3479999
Q ss_pred EcCceEEEEeC-CeEEEEe--------------ccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccEEeCC
Q 041537 263 LTECRVVNVSD-KEITMKI--------------KSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATNE 325 (547)
Q Consensus 263 ~~~~~V~~v~~-~~v~~~~--------------~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~ 325 (547)
++++.+.+++. +.+.+.. ...++..++++|+||+|+|. .|+. .++...++ +.+|++.||+
T Consensus 725 ~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~--~Pnt-elle~~GL~ld~~G~I~VDe 801 (1019)
T PRK09853 725 KELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGE--QVDT-ELLKANGIPLDKKGWPVVDA 801 (1019)
T ss_pred EeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCC--cCCh-hHHHhcCccccCCCCEEeCC
Confidence 99999998863 3332210 01233346999999999995 4555 35555665 6778999999
Q ss_pred CCCcCCCCCEEEeCccCc
Q 041537 326 WLRVKECENVYALGDCAT 343 (547)
Q Consensus 326 ~l~~~~~~~VfaiGD~a~ 343 (547)
++++ +.|+|||+|||+.
T Consensus 802 tlqT-s~pgVFAaGD~a~ 818 (1019)
T PRK09853 802 NGET-SLTNVYMIGDVQR 818 (1019)
T ss_pred Cccc-CCCCEEEEecccc
Confidence 9998 8999999999975
No 54
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.97 E-value=1.2e-29 Score=273.54 Aligned_cols=268 Identities=19% Similarity=0.300 Sum_probs=188.8
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC----Chhhhhc-cccCccccchhHHHHHHhCCCcEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP----LLPSVTC-GTVEARSIAEPVRNIIKKRNAEIQFW 100 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p----~l~~~~~-g~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (547)
...++|+|||||+|||+||.+|++.|++|+||++. ++++. .++.+.. ......++...+...++++++++. .
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~-~ 285 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM-N 285 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE-c
Confidence 34689999999999999999999999999999874 22221 1111110 112334566777888888885442 3
Q ss_pred EEEEEEEECCCC--EEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHcc
Q 041537 101 EAEAIKIDAAKN--EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAV 178 (547)
Q Consensus 101 ~~~v~~id~~~~--~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~ 178 (547)
..+|+.++.... .|.+.+ +. ++.||+||+|||+.++.+++||..++... .+ ..+
T Consensus 286 ~~~V~~I~~~~~~~~V~~~~----g~---~i~a~~vViAtG~~~r~~~ipG~~~~~~~--~v----------~~~----- 341 (517)
T PRK15317 286 LQRASKLEPAAGLIEVELAN----GA---VLKAKTVILATGARWRNMNVPGEDEYRNK--GV----------AYC----- 341 (517)
T ss_pred CCEEEEEEecCCeEEEEECC----CC---EEEcCEEEECCCCCcCCCCCCCHHHhcCc--eE----------EEe-----
Confidence 568999988644 344433 43 79999999999999999999986432100 00 000
Q ss_pred CCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHh-
Q 041537 179 LPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQR- 257 (547)
Q Consensus 179 ~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~- 257 (547)
+.. .....++++|+|||||++|+|+|..|..+ +.+|+++++++.+.. .+.+.+.+.+
T Consensus 342 -~~~-~~~~~~gk~VvVVGgG~~g~e~A~~L~~~--------------~~~Vtlv~~~~~l~~------~~~l~~~l~~~ 399 (517)
T PRK15317 342 -PHC-DGPLFKGKRVAVIGGGNSGVEAAIDLAGI--------------VKHVTVLEFAPELKA------DQVLQDKLRSL 399 (517)
T ss_pred -ecc-CchhcCCCEEEEECCCHHHHHHHHHHHhc--------------CCEEEEEEECccccc------cHHHHHHHhcC
Confidence 000 00113567999999999999999999876 579999999887643 2345556665
Q ss_pred CCcEEEcCceEEEEeCC--e---EEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCcCCC
Q 041537 258 DGIEVLTECRVVNVSDK--E---ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKEC 332 (547)
Q Consensus 258 ~GV~v~~~~~V~~v~~~--~---v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~ 332 (547)
.||++++++.++++.++ . +++.+..+|+..+++||.++|++|. .|+++.+...+.++.+|+|.||+++|| ++
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~--~p~~~~l~~~v~~~~~g~i~vd~~l~T-s~ 476 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL--VPNTEWLKGTVELNRRGEIIVDARGAT-SV 476 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC--ccCchHHhhheeeCCCCcEEECcCCCC-CC
Confidence 59999999999999765 2 4555434465557999999999995 455533322233467789999999998 99
Q ss_pred CCEEEeCccCccC
Q 041537 333 ENVYALGDCATID 345 (547)
Q Consensus 333 ~~VfaiGD~a~~~ 345 (547)
|+|||+|||+..+
T Consensus 477 p~IyAaGDv~~~~ 489 (517)
T PRK15317 477 PGVFAAGDCTTVP 489 (517)
T ss_pred CCEEECccccCCC
Confidence 9999999998753
No 55
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.97 E-value=5.7e-30 Score=267.79 Aligned_cols=274 Identities=23% Similarity=0.417 Sum_probs=230.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCC---CCCeEEEEcCCCCCcc-CCChhhhhccccCccccchhHHHHHHhCCCcEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDV---SSYDVQVVSPQNYFAF-TPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEA 102 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~---~g~~Vtlid~~~~~~~-~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 102 (547)
.+.++||||.|.+|..+...+.+ .-++||++-.+++..| ..++..+.++..+.+++...-.++.++.++++ +...
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L-~~~~ 80 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITL-YTGE 80 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEE-EcCC
Confidence 45789999999999999887764 6689999999888777 57888899998888888888889999998444 2456
Q ss_pred EEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCC
Q 041537 103 EAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPG 181 (547)
Q Consensus 103 ~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 181 (547)
+|+.||++++.|+.+. |. ++.||.||+||||.|..+++||.. ..++.+++++|...+.+. .
T Consensus 81 ~v~~idr~~k~V~t~~----g~---~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~-a---------- 142 (793)
T COG1251 81 KVIQIDRANKVVTTDA----GR---TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDC-A---------- 142 (793)
T ss_pred eeEEeccCcceEEccC----Cc---EeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHH-H----------
Confidence 8999999999999886 54 999999999999999999999986 578899999998887665 1
Q ss_pred CCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC-cccHHHHHHHHHHHHhCCc
Q 041537 182 LSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN-SFDERISSFAEKKFQRDGI 260 (547)
Q Consensus 182 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-~~~~~~~~~~~~~l~~~GV 260 (547)
+..++.+|||||..|+|.|..|.+. +.++++++..+.++. .+|+...+.+.+.|+++||
T Consensus 143 ------r~~~~avVIGGGLLGlEaA~~L~~~--------------Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi 202 (793)
T COG1251 143 ------RNKKKAVVIGGGLLGLEAARGLKDL--------------GMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGI 202 (793)
T ss_pred ------hccCCcEEEccchhhhHHHHHHHhC--------------CCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcc
Confidence 3344689999999999999999987 789999999999886 5899999999999999999
Q ss_pred EEEcCceEEEEeC-CeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCcCCCCCEEEeC
Q 041537 261 EVLTECRVVNVSD-KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVKECENVYALG 339 (547)
Q Consensus 261 ~v~~~~~V~~v~~-~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~VfaiG 339 (547)
+++++...+++.+ +.+.....++|+. +++|.||||+|++ |+. .+....++.-+..|+||+++|| +.|+|||+|
T Consensus 203 ~~~l~~~t~ei~g~~~~~~vr~~DG~~--i~ad~VV~a~GIr--Pn~-ela~~aGlavnrGIvvnd~mqT-sdpdIYAvG 276 (793)
T COG1251 203 KVLLEKNTEEIVGEDKVEGVRFADGTE--IPADLVVMAVGIR--PND-ELAKEAGLAVNRGIVVNDYMQT-SDPDIYAVG 276 (793)
T ss_pred eeecccchhhhhcCcceeeEeecCCCc--ccceeEEEecccc--ccc-HhHHhcCcCcCCCeeecccccc-cCCCeeehh
Confidence 9999999888864 2333333345886 9999999999975 444 6777888843336999999999 999999999
Q ss_pred ccCccC
Q 041537 340 DCATID 345 (547)
Q Consensus 340 D~a~~~ 345 (547)
+|+...
T Consensus 277 Ecae~~ 282 (793)
T COG1251 277 ECAEHR 282 (793)
T ss_pred hHHHhc
Confidence 999863
No 56
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1.5e-29 Score=260.38 Aligned_cols=281 Identities=19% Similarity=0.229 Sum_probs=172.4
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEE-EEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEA-EAI 105 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~ 105 (547)
..++|+|||||++|+++|..|++.|++|+|||+.+..+.... ..........+.+...+..+ ...+ +++..+ .+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~~~l-~~~~--i~~~~~~~v~ 92 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML-FGIPEFRIPIERVREGVKEL-EEAG--VVFHTRTKVC 92 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee-ecCcccccCHHHHHHHHHHH-HhCC--eEEecCcEEe
Confidence 457999999999999999999999999999999887653211 11111111222233334444 3446 555544 333
Q ss_pred EEEC----CCCEEEEecCCCCCCceeeeecCEEEEccCC-CccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCC
Q 041537 106 KIDA----AKNEVFCKSNIDKETRDFSLEYDYLIIAVGA-QVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLP 180 (547)
Q Consensus 106 ~id~----~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~-~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 180 (547)
.++. ....+...... .+ ...+.||+||||||+ .+..|++||.+.... +...+....++...... ....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v-~~~~~~~~~~~~~~~~~---~~~~ 165 (352)
T PRK12770 93 CGEPLHEEEGDEFVERIVS--LE-ELVKKYDAVLIATGTWKSRKLGIPGEDLPGV-YSALEYLFRIRAAKLGY---LPWE 165 (352)
T ss_pred eccccccccccccccccCC--HH-HHHhhCCEEEEEeCCCCCCcCCCCCccccCc-eeHHHHHHHhhhccccc---cccc
Confidence 3322 11111100000 00 114789999999999 477888998752211 11111111111100000 0000
Q ss_pred CCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCce-EEEEecCCccCCcccHHHHHHHHHHHHhCC
Q 041537 181 GLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR-ITLIQSGDHILNSFDERISSFAEKKFQRDG 259 (547)
Q Consensus 181 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~il~~~~~~~~~~~~~~l~~~G 259 (547)
.. ....+++++|||+|++|+|+|..|... +.+ |+++++.+...... .....+.|+++|
T Consensus 166 ~~---~~~~g~~vvViG~G~~g~e~A~~l~~~--------------g~~~Vtvi~~~~~~~~~~----~~~~~~~l~~~g 224 (352)
T PRK12770 166 KV---PPVEGKKVVVVGAGLTAVDAALEAVLL--------------GAEKVYLAYRRTINEAPA----GKYEIERLIARG 224 (352)
T ss_pred cc---cccCCCEEEEECCCHHHHHHHHHHHHc--------------CCCeEEEEeecchhhCCC----CHHHHHHHHHcC
Confidence 00 012357999999999999999998765 455 99999876432211 234456689999
Q ss_pred cEEEcCceEEEEeCC-eE---EEEec---------------cCCeEEEEeeceEEEccCCCCCcchHHHHHH-hCC--CC
Q 041537 260 IEVLTECRVVNVSDK-EI---TMKIK---------------STGAVCSIPHGLVLWSTGVGTRPAIKDFMEQ-IGQ--GK 317 (547)
Q Consensus 260 V~v~~~~~V~~v~~~-~v---~~~~~---------------~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~-~~~--~~ 317 (547)
|++++++.+++++++ .+ .+... .+|+..+++||.|||++|..+.+ .+..+ +++ +.
T Consensus 225 i~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~---~l~~~~~g~~~~~ 301 (352)
T PRK12770 225 VEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP---PFAKECLGIELNR 301 (352)
T ss_pred CEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc---hhhhcccCceecC
Confidence 999999999999753 22 22211 12444469999999999976554 34433 454 56
Q ss_pred CccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 318 RRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 318 ~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+|+|.||+++++ +.|+|||+|||+.
T Consensus 302 ~g~i~vd~~~~t-~~~~vyaiGD~~~ 326 (352)
T PRK12770 302 KGEIVVDEKHMT-SREGVFAAGDVVT 326 (352)
T ss_pred CCcEeeCCCccc-CCCCEEEEccccc
Confidence 788999999998 8999999999975
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=2.7e-29 Score=281.91 Aligned_cols=271 Identities=22% Similarity=0.273 Sum_probs=175.9
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
.+.++|+|||||+|||+||.+|++.|++|+|+|+.+..+.. +.+.++...+ +.++.....+.+.+.+ ++|..+...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~-l~~gip~~rl-p~~~~~~~~~~l~~~g--v~~~~~~~v 504 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV-LKYGIPEFRL-PKKIVDVEIENLKKLG--VKFETDVIV 504 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCe-eeecCCCCCC-CHHHHHHHHHHHHHCC--CEEECCCEE
Confidence 45789999999999999999999999999999997654432 2222222222 2334444455667777 555544332
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCC-CccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCH
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA-QVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~-~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 184 (547)
++.+++++ . ....||+||||||+ .++.+++||.+. ..+.+..+... .... ...... ...
T Consensus 505 -----~~~v~~~~----l---~~~~ydavvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~---~~~~--~~~~~~-~~~ 564 (752)
T PRK12778 505 -----GKTITIEE----L---EEEGFKGIFIASGAGLPNFMNIPGENS--NGVMSSNEYLT---RVNL--MDAASP-DSD 564 (752)
T ss_pred -----CCcCCHHH----H---hhcCCCEEEEeCCCCCCCCCCCCCCCC--CCcEEHHHHHH---HHhh--cccccc-ccc
Confidence 23444433 1 25679999999999 588889999642 12222222221 1110 000000 000
Q ss_pred HHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCce-EEEEecCCc-cCCcccHHHHHHHHHHHHhCCcEE
Q 041537 185 EERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR-ITLIQSGDH-ILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 185 ~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~-il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
.....+++|+|||||++|+|+|..+.++ +.+ |+++++.+. .+|....++ +.+++.||++
T Consensus 565 ~~~~~gk~VvVIGgG~~a~d~A~~~~r~--------------Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i 625 (752)
T PRK12778 565 TPIKFGKKVAVVGGGNTAMDSARTAKRL--------------GAERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEF 625 (752)
T ss_pred CcccCCCcEEEECCcHHHHHHHHHHHHc--------------CCCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEE
Confidence 0113567999999999999999999876 455 999998764 334322221 4567889999
Q ss_pred EcCceEEEEeC---Ce---EEEEec---------------cCCeEEEEeeceEEEccCCCCCcchHHHHHHh-C--CCCC
Q 041537 263 LTECRVVNVSD---KE---ITMKIK---------------STGAVCSIPHGLVLWSTGVGTRPAIKDFMEQI-G--QGKR 318 (547)
Q Consensus 263 ~~~~~V~~v~~---~~---v~~~~~---------------~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~-~--~~~~ 318 (547)
++++.+.++.. +. +.+... .+|+..+++||+||+|+|..++. .+.... + ++.+
T Consensus 626 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~---~l~~~~~gl~~~~~ 702 (752)
T PRK12778 626 LTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP---LVPSSIPGLELNRK 702 (752)
T ss_pred EecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc---cccccccCceECCC
Confidence 99999988853 22 233210 02344569999999999975543 232222 3 3677
Q ss_pred ccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 319 RVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 319 g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
|+|.||++++| +.|+|||+|||+.
T Consensus 703 G~i~vd~~~~T-s~~gVfA~GD~~~ 726 (752)
T PRK12778 703 GTIVVDEEMQS-SIPGIYAGGDIVR 726 (752)
T ss_pred CCEEeCCCCCC-CCCCEEEeCCccC
Confidence 89999999988 8999999999975
No 58
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3.6e-29 Score=239.40 Aligned_cols=274 Identities=20% Similarity=0.299 Sum_probs=202.8
Q ss_pred CCCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCC----------hhh--------------hhc---c
Q 041537 23 EKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPL----------LPS--------------VTC---G 75 (547)
Q Consensus 23 ~~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~----------l~~--------------~~~---g 75 (547)
.......|.+|||||.+|+++|++.+..|.++.|+|..-..+++.. ++. +.. +
T Consensus 15 a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 15 AADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG 94 (478)
T ss_pred cccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence 3344578999999999999999999999999999997533333211 000 000 0
Q ss_pred ccC-------ccccchhHHHHHHhC--CCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 76 TVE-------ARSIAEPVRNIIKKR--NAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 76 ~~~-------~~~~~~~~~~~~~~~--~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
..+ .+.....+..+.++. +..++++.++...+++.+-.|...+ +. ...+.+.++.||+|.+|..|+
T Consensus 95 ~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d----~~-~~~Ytak~iLIAtGg~p~~Pn 169 (478)
T KOG0405|consen 95 SFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVND----GT-KIVYTAKHILIATGGRPIIPN 169 (478)
T ss_pred CCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecC----Ce-eEEEecceEEEEeCCccCCCC
Confidence 000 011122222222211 2258899999999998877776665 32 335899999999999999999
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCC
Q 041537 147 TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKD 226 (547)
Q Consensus 147 ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~ 226 (547)
|||.+ +.. ++....+++. ..++++|||+|++++|+|+.++.+
T Consensus 170 IpG~E-~gi----------------dSDgff~Lee-------~Pkr~vvvGaGYIavE~Agi~~gL-------------- 211 (478)
T KOG0405|consen 170 IPGAE-LGI----------------DSDGFFDLEE-------QPKRVVVVGAGYIAVEFAGIFAGL-------------- 211 (478)
T ss_pred CCchh-hcc----------------ccccccchhh-------cCceEEEEccceEEEEhhhHHhhc--------------
Confidence 99974 221 1112222222 335999999999999999999988
Q ss_pred CceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCc
Q 041537 227 LVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRP 304 (547)
Q Consensus 227 ~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p 304 (547)
+.+++|+-|.+.+|..||+.+++.+.+.++.+||+++.++.++++.. ++..+...+.|+. ..+|.++||+| +.|
T Consensus 212 gsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i--~~vd~llwAiG--R~P 287 (478)
T KOG0405|consen 212 GSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTI--EDVDTLLWAIG--RKP 287 (478)
T ss_pred CCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecccc--ccccEEEEEec--CCC
Confidence 78999999999999999999999999999999999999999999853 3322222234652 44999999999 788
Q ss_pred chHHH-HHHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCcc
Q 041537 305 AIKDF-MEQIGQ--GKRRVLATNEWLRVKECENVYALGDCATI 344 (547)
Q Consensus 305 ~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 344 (547)
++..| ++..|+ +..|.|.||++-+| +.|+||++||++.-
T Consensus 288 ntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk 329 (478)
T KOG0405|consen 288 NTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGK 329 (478)
T ss_pred CcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCc
Confidence 88888 667776 78899999999999 99999999999873
No 59
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-28 Score=243.95 Aligned_cols=272 Identities=20% Similarity=0.281 Sum_probs=197.1
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCe-EEEEcCCCCCccCC----Chhhhhc--cccCccccchhHHHHHHhCCCcEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYD-VQVVSPQNYFAFTP----LLPSVTC--GTVEARSIAEPVRNIIKKRNAEIQF 99 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~-Vtlid~~~~~~~~p----~l~~~~~--g~~~~~~~~~~~~~~~~~~~~~v~~ 99 (547)
+.+||+|||||||||+||.++++.+.+ ++|+|+.. .+.++ ....++. +.....++...++++....+ +++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~--~~~ 78 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFG--VEI 78 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcC--eEE
Confidence 468999999999999999999999999 66666542 22222 2222221 11223445555666666676 777
Q ss_pred EEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccc---cccCCHHHHHHHHHHHHHHHHH
Q 041537 100 WEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENC---HFLKELEDAQKIRRTVTDCFEK 176 (547)
Q Consensus 100 ~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~---~~~~~~~~a~~l~~~l~~~~~~ 176 (547)
+..+|..++.....+.+... .. ++.+++||||||..++.+++||..+.. ..++...|.
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~---~~---~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg------------- 139 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTD---KG---TYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG------------- 139 (305)
T ss_pred EEEEEEEEeecCceEEEEEC---CC---eEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-------------
Confidence 78999999987633333321 11 599999999999999999998644221 111111111
Q ss_pred ccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHH
Q 041537 177 AVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQ 256 (547)
Q Consensus 177 ~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~ 256 (547)
..+.++|+|||||++++|-|..|..+. .+|++++|.+.+-+ .+...+.|+
T Consensus 140 ----------~~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra------~~~~~~~l~ 189 (305)
T COG0492 140 ----------FFKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA------EEILVERLK 189 (305)
T ss_pred ----------cccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc------CHHHHHHHH
Confidence 245569999999999999999999984 58999999997643 455566677
Q ss_pred hC-CcEEEcCceEEEEeCC---eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC-CCCccEEeCCCCCcCC
Q 041537 257 RD-GIEVLTECRVVNVSDK---EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ-GKRRVLATNEWLRVKE 331 (547)
Q Consensus 257 ~~-GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~-~~~g~i~Vd~~l~~~~ 331 (547)
+. +|++++++.++++.++ ++++++.. |+..++++|-++.++| ..|+. .+....+. +.+|+|.||+.++| +
T Consensus 190 ~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~-~~~~~~~~~gvf~~iG--~~p~~-~~~~~~~~~~~~g~I~v~~~~~T-s 264 (305)
T COG0492 190 KNVKIEVLTNTVVKEILGDDVEGVVLKNVK-GEEKELPVDGVFIAIG--HLPNT-ELLKGLGVLDENGYIVVDEEMET-S 264 (305)
T ss_pred hcCCeEEEeCCceeEEecCccceEEEEecC-CceEEEEeceEEEecC--CCCch-HHHhhccccCCCCcEEcCCCccc-C
Confidence 66 8999999999999884 67777643 6666799999999999 56666 55555554 78899999999999 9
Q ss_pred CCCEEEeCccCccCcccchhhhhH
Q 041537 332 CENVYALGDCATIDQRKVMEDIST 355 (547)
Q Consensus 332 ~~~VfaiGD~a~~~~~~~~~~~~~ 355 (547)
.|+|||+|||+..+.+++.++..+
T Consensus 265 vpGifAaGDv~~~~~rqi~ta~~~ 288 (305)
T COG0492 265 VPGIFAAGDVADKNGRQIATAAGD 288 (305)
T ss_pred CCCEEEeEeeccCcccEEeehhhh
Confidence 999999999998765544444333
No 60
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=1.2e-28 Score=262.71 Aligned_cols=275 Identities=19% Similarity=0.239 Sum_probs=173.2
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
...++|+|||||+|||++|..|++.|++|+|||+.+..+... .+.++.. ..+.++.....+.+...+ +++..+...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l-~~gip~~-~~~~~~~~~~~~~~~~~g--v~~~~~~~v 216 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL-RYGIPDF-KLEKEVIDRRIELMEAEG--IEFRTNVEV 216 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee-eecCCcc-cCCHHHHHHHHHHHHhCC--cEEEeCCEE
Confidence 456799999999999999999999999999999988764321 1122111 122334444556677777 555544433
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC-ccCCCCCCcc-ccccccCCHHHHHHHHHHHHH-HHHHccCCCC
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNTFGTPGVL-ENCHFLKELEDAQKIRRTVTD-CFEKAVLPGL 182 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~-~~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~-~~~~~~~~~~ 182 (547)
..+. .... ....||+||+|||+. +..+++||.+ .++++ +..+...... .......+
T Consensus 217 ~~~~-----~~~~--------~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~------~~~~l~~~~~~~~~~~~~~-- 275 (471)
T PRK12810 217 GKDI-----TAEE--------LLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHF------AMDFLIQNTRRVLGDETEP-- 275 (471)
T ss_pred CCcC-----CHHH--------HHhhCCEEEEecCCCCCCcCCCCCccCCCcEE------HHHHHHHHHhhhccccccc--
Confidence 3221 1111 145899999999997 6778899864 22221 1111111100 00000000
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcc-cH-----HHHHHHHHHHH
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF-DE-----RISSFAEKKFQ 256 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~-~~-----~~~~~~~~~l~ 256 (547)
.....+++|+|||+|++|+|+|..+.+.. ..+|++++..+...... +. .......+.++
T Consensus 276 --~~~~~gk~VvVIGgG~~g~e~A~~~~~~g-------------a~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (471)
T PRK12810 276 --FISAKGKHVVVIGGGDTGMDCVGTAIRQG-------------AKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAH 340 (471)
T ss_pred --cccCCCCEEEEECCcHHHHHHHHHHHHcC-------------CCeEEEccccCCCccccccccCCcccchHHHHHHHH
Confidence 01134679999999999999999887763 23788776554322111 00 01111346678
Q ss_pred hCCcEEEcCceEEEEeC--CeEE---EEe--c-------cCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCcc
Q 041537 257 RDGIEVLTECRVVNVSD--KEIT---MKI--K-------STGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRV 320 (547)
Q Consensus 257 ~~GV~v~~~~~V~~v~~--~~v~---~~~--~-------~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~ 320 (547)
+.||++++++.++++.. +.++ +.. . ..|+..++++|.||||+|..++. ..+++.+++ +.+|+
T Consensus 341 ~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~--~~l~~~~gl~~~~~g~ 418 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPE--AGLLAQFGVELDERGR 418 (471)
T ss_pred HcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCc--hhhccccCcccCCCCC
Confidence 89999999999999963 3332 221 1 12444569999999999965432 235555554 66789
Q ss_pred EEeC-CCCCcCCCCCEEEeCccCc
Q 041537 321 LATN-EWLRVKECENVYALGDCAT 343 (547)
Q Consensus 321 i~Vd-~~l~~~~~~~VfaiGD~a~ 343 (547)
+.|| ++++| +.|+|||+|||+.
T Consensus 419 i~vd~~~~~T-s~~gVfa~GD~~~ 441 (471)
T PRK12810 419 VAAPDNAYQT-SNPKVFAAGDMRR 441 (471)
T ss_pred EEeCCCcccC-CCCCEEEccccCC
Confidence 9998 68998 8999999999986
No 61
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.96 E-value=1e-28 Score=279.04 Aligned_cols=297 Identities=15% Similarity=0.136 Sum_probs=198.6
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
.+.++|+|||||||||+||.+|++.|++|||+|+.+..++. +.+.++. ...+.++.....+.++..| ++|..+...
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~-l~yGIP~-~rlp~~vi~~~i~~l~~~G--v~f~~n~~v 379 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV-LRYGIPE-FRLPNQLIDDVVEKIKLLG--GRFVKNFVV 379 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce-EEccCCC-CcChHHHHHHHHHHHHhhc--CeEEEeEEe
Confidence 35789999999999999999999999999999998776543 2233322 2223455666666777777 566555433
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC-ccCCCCCCccccccccCCHHHHHHHHHHHHHHHH-HccCCCCC
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFE-KAVLPGLS 183 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~-~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~-~~~~~~~~ 183 (547)
++.+++++. ....||+||||||+. |+.+++||.+ ...+.+..+.+. ....... ..... .
T Consensus 380 -----G~dit~~~l-------~~~~yDAV~LAtGA~~pr~l~IpG~d--l~GV~~a~dfL~---~~~~~~~~~~~~~--~ 440 (944)
T PRK12779 380 -----GKTATLEDL-------KAAGFWKIFVGTGAGLPTFMNVPGEH--LLGVMSANEFLT---RVNLMRGLDDDYE--T 440 (944)
T ss_pred -----ccEEeHHHh-------ccccCCEEEEeCCCCCCCcCCCCCCc--CcCcEEHHHHHH---HHHhhcccccccc--c
Confidence 234555541 156799999999995 8888999953 122233333222 2111000 00000 0
Q ss_pred HHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCc-cCCcccHHHHHHHHHHHHhCCcEE
Q 041537 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH-ILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 184 ~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
+.....+++|+|||||++|+|+|..+.++ +.+|+++.+.+. .+|....++ . ...+.||++
T Consensus 441 ~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~--------------Ga~Vtlv~rr~~~~mpa~~~e~----~-~a~eeGV~~ 501 (944)
T PRK12779 441 PLPEVKGKEVFVIGGGNTAMDAARTAKRL--------------GGNVTIVYRRTKSEMPARVEEL----H-HALEEGINL 501 (944)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHHHc--------------CCEEEEEEecCcccccccHHHH----H-HHHHCCCEE
Confidence 00112568999999999999999999886 578999998764 344332222 2 234679999
Q ss_pred EcCceEEEEeCC----eEE---EEe--------------ccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCc
Q 041537 263 LTECRVVNVSDK----EIT---MKI--------------KSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRR 319 (547)
Q Consensus 263 ~~~~~V~~v~~~----~v~---~~~--------------~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g 319 (547)
++++.++++..+ .+. +.. ..+|++.+++||+||+|+|+.+++.. .....++ +.+|
T Consensus 502 ~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l--~~~~~gle~~~~G 579 (944)
T PRK12779 502 AVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM--KDAEPGLKTNKWG 579 (944)
T ss_pred EeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhh--hhcccCceECCCC
Confidence 999999998532 221 110 01244457999999999997654321 1222344 6778
Q ss_pred cEEeCC-CCCcCCCCCEEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhh
Q 041537 320 VLATNE-WLRVKECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLK 392 (547)
Q Consensus 320 ~i~Vd~-~l~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (547)
.|.||+ +++| +.|+|||+|||+..+ ..+.+|+.+|+.+|.+|+.||.
T Consensus 580 ~I~vd~~~~~T-s~pgVFAaGD~~~G~-------------------------~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 580 TIEVEKGSQRT-SIKGVYSGGDAARGG-------------------------STAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CEEECCCCCcc-CCCCEEEEEcCCCCh-------------------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 999997 5777 899999999998753 2367899999999999999884
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=3e-28 Score=268.34 Aligned_cols=262 Identities=18% Similarity=0.232 Sum_probs=170.8
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
.+.++|+|||||+|||++|..|++.|++|+|||+++..++.. .+.+ +....+.++.....+.+...+ +++..+...
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l-~~gi-p~~~~~~~~~~~~~~~l~~~G--v~i~~~~~v 266 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM-RYGI-PRFRLPESVIDADIAPLRAMG--AEFRFNTVF 266 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcee-eecC-CCCCCCHHHHHHHHHHHHHcC--CEEEeCCcc
Confidence 456899999999999999999999999999999988765322 1111 121223344444455666777 444444332
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc-cCCCCCCccc-cccccCCHHHHHHHHHHHHHHHHHccCCCCC
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV-NTFGTPGVLE-NCHFLKELEDAQKIRRTVTDCFEKAVLPGLS 183 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~-~~~~ipG~~e-~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 183 (547)
.++ +.+.+ ....||+||||||+.+ ..+++||.+. +++ .+..+.+... ..
T Consensus 267 ~~d-----v~~~~--------~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~------~~~~~l~~~~----~~------ 317 (652)
T PRK12814 267 GRD-----ITLEE--------LQKEFDAVLLAVGAQKASKMGIPGEELPGVI------SGIDFLRNVA----LG------ 317 (652)
T ss_pred cCc-----cCHHH--------HHhhcCEEEEEcCCCCCCCCCCCCcCcCCcE------eHHHHHHHhh----cC------
Confidence 222 22221 1345999999999985 4678888642 111 1111111110 00
Q ss_pred HHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCc-cCCcccHHHHHHHHHHHHhCCcEE
Q 041537 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH-ILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 184 ~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
.....+++|+|||+|++|+|+|..+.++. ..+|+++++.+. .+|..+.++. .+.+.||++
T Consensus 318 -~~~~~gk~VvVIGgG~~a~e~A~~l~~~G-------------a~~Vtlv~r~~~~~mpa~~~ei~-----~a~~eGV~i 378 (652)
T PRK12814 318 -TALHPGKKVVVIGGGNTAIDAARTALRLG-------------AESVTILYRRTREEMPANRAEIE-----EALAEGVSL 378 (652)
T ss_pred -CcccCCCeEEEECCCHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHHH-----HHHHcCCcE
Confidence 01135679999999999999999988762 237999998874 5665544332 224579999
Q ss_pred EcCceEEEEeC--CeEEEE-----ec------------cCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccE
Q 041537 263 LTECRVVNVSD--KEITMK-----IK------------STGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVL 321 (547)
Q Consensus 263 ~~~~~V~~v~~--~~v~~~-----~~------------~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i 321 (547)
++++.+.++.. +.+.+. .. .+|+..++++|.||||+|..+. . .++...++ +.+|+|
T Consensus 379 ~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~--~-~ll~~~gl~~~~~G~I 455 (652)
T PRK12814 379 RELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD--P-PIAEAAGIGTSRNGTV 455 (652)
T ss_pred EeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCC--c-ccccccCccccCCCcE
Confidence 99999988863 333221 10 1244456999999999996544 3 34444444 567899
Q ss_pred EeCC-CCCcCCCCCEEEeCccCc
Q 041537 322 ATNE-WLRVKECENVYALGDCAT 343 (547)
Q Consensus 322 ~Vd~-~l~~~~~~~VfaiGD~a~ 343 (547)
.||+ +++| +.|+|||+|||+.
T Consensus 456 ~vd~~~~~T-s~pgVfA~GDv~~ 477 (652)
T PRK12814 456 KVDPETLQT-SVAGVFAGGDCVT 477 (652)
T ss_pred eeCCCCCcC-CCCCEEEcCCcCC
Confidence 9998 5666 8999999999975
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.95 E-value=4.1e-27 Score=268.48 Aligned_cols=298 Identities=15% Similarity=0.148 Sum_probs=192.5
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
+.++|+|||||||||+||.+|++.|++|+|+|+.+..+.. +.+.++.. ..+.++.....+.+...| +++..+.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~-l~~gip~~-rl~~e~~~~~~~~l~~~G--v~~~~~~~vg 504 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV-LQYGIPSF-RLPRDIIDREVQRLVDIG--VKIETNKVIG 504 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce-eeccCCcc-CCCHHHHHHHHHHHHHCC--CEEEeCCccC
Confidence 4689999999999999999999999999999998776532 11222222 234456666667777888 5555544332
Q ss_pred EECCCCEEEEecCCCCCCceeeeecCEEEEccCCC-ccCCCCCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCCCCH
Q 041537 107 IDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNTFGTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184 (547)
Q Consensus 107 id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~-~~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 184 (547)
+.+++.+.. ....||+||||||+. ++.+++||.+ .++ .+..+.+ +.+.. ......+.. .
T Consensus 505 -----~~~~~~~l~------~~~~yDaViIATGa~~pr~l~IpG~~l~gV---~~a~~fL---~~~~~-~~~~~~~~~-~ 565 (1006)
T PRK12775 505 -----KTFTVPQLM------NDKGFDAVFLGVGAGAPTFLGIPGEFAGQV---YSANEFL---TRVNL-MGGDKFPFL-D 565 (1006)
T ss_pred -----CccCHHHHh------hccCCCEEEEecCCCCCCCCCCCCcCCCCc---EEHHHHH---HHHHh-cCccccccc-c
Confidence 223332210 035699999999995 8889999963 222 2222222 22110 000000000 0
Q ss_pred HHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCc-cCCcccHHHHHHHHHHHHhCCcEEE
Q 041537 185 EERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH-ILNSFDERISSFAEKKFQRDGIEVL 263 (547)
Q Consensus 185 ~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~l~~~GV~v~ 263 (547)
.....+++|+|||||++|+|+|..+.++.. ..|+++.+... -+|.... -.+.+++.||+++
T Consensus 566 ~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~-----e~~~a~eeGI~~~ 627 (1006)
T PRK12775 566 TPISLGKSVVVIGAGNTAMDCLRVAKRLGA-------------PTVRCVYRRSEAEAPARIE-----EIRHAKEEGIDFF 627 (1006)
T ss_pred CCccCCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEeecCcccCCCCHH-----HHHHHHhCCCEEE
Confidence 011356799999999999999998887631 35788876543 2232211 1245778899999
Q ss_pred cCceEEEEeC---Ce---EEEEec------c--------CCeEEEEeeceEEEccCCCCCcchHHHHHH---hCCCCCcc
Q 041537 264 TECRVVNVSD---KE---ITMKIK------S--------TGAVCSIPHGLVLWSTGVGTRPAIKDFMEQ---IGQGKRRV 320 (547)
Q Consensus 264 ~~~~V~~v~~---~~---v~~~~~------~--------~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~---~~~~~~g~ 320 (547)
+++.+.++.. +. +.+... . +|+..++++|+||+|+|+.++ .. +... +.++.+|.
T Consensus 628 ~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~--~~-~~~~~~gl~l~~~G~ 704 (1006)
T PRK12775 628 FLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKAN--PI-ITQSTPGLALNKWGN 704 (1006)
T ss_pred ecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCC--hh-hhhccCCcccCCCCc
Confidence 9999999852 22 333210 1 234446999999999996544 32 3222 33467789
Q ss_pred EEeCC-----CCCcCCCCCEEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhhcc
Q 041537 321 LATNE-----WLRVKECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNK 394 (547)
Q Consensus 321 i~Vd~-----~l~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (547)
|.||+ +++| +.|+|||+|||+..+ ..+..|+.+++.++-+|+.||+++
T Consensus 705 I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~-------------------------~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 705 IAADDGKLESTQST-NLPGVFAGGDIVTGG-------------------------ATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred EEeCCCccccCcCC-CCCCEEEecCcCCCc-------------------------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99996 6777 999999999998643 135678888888888888888654
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.95 E-value=1.1e-26 Score=246.86 Aligned_cols=272 Identities=17% Similarity=0.189 Sum_probs=172.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEE-EEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEA-EAI 105 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~ 105 (547)
+.++|+|||||++||++|..|++.|++|+|+|+.+..++.. .+.++... .+.++.....+++...| +++..+ ++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l-~~gip~~~-~~~~~~~~~~~~~~~~G--v~~~~~~~v- 214 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLL-TFGIPSFK-LDKAVLSRRREIFTAMG--IEFHLNCEV- 214 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCcee-eecCcccc-CCHHHHHHHHHHHHHCC--CEEECCCEe-
Confidence 56899999999999999999999999999999988765321 11222111 23345555566777888 444322 22
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc-cCCCCCCccccccccCCHHHHHHHHHHHHHHH-HHccCCCCC
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV-NTFGTPGVLENCHFLKELEDAQKIRRTVTDCF-EKAVLPGLS 183 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~-~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~-~~~~~~~~~ 183 (547)
.+.+.+.+ ....||.||+|||+.+ ..+++||.+.. .+..+..+.......+ ........+
T Consensus 215 -----~~~~~~~~--------~~~~~D~vilAtGa~~~~~~~i~g~~~~-----gV~~a~~~l~~~~~~~~~~~~~~~~~ 276 (467)
T TIGR01318 215 -----GRDISLDD--------LLEDYDAVFLGVGTYRSMRGGLPGEDAP-----GVLQALPFLIANTRQLMGLPESPEEP 276 (467)
T ss_pred -----CCccCHHH--------HHhcCCEEEEEeCCCCCCcCCCCCcCCC-----CcEEHHHHHHHHHHHhcCCCcccccc
Confidence 11122221 1357999999999986 45688886521 1112221111100000 000000000
Q ss_pred HHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCc-cCCcccHHHHHHHHHHHHhCCcEE
Q 041537 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH-ILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 184 ~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
.....+++++|||+|++|+|+|..+.++. ..+|+++++.+. .+|..+.++ +.+++.||++
T Consensus 277 -~~~~~gk~VvVIGgG~~a~d~A~~a~~~G-------------a~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~ 337 (467)
T TIGR01318 277 -LIDVEGKRVVVLGGGDTAMDCVRTAIRLG-------------AASVTCAYRRDEANMPGSRREV-----ANAREEGVEF 337 (467)
T ss_pred -ccccCCCEEEEECCcHHHHHHHHHHHHcC-------------CCeEEEEEecCcccCCCCHHHH-----HHHHhcCCEE
Confidence 00124679999999999999999888762 137999998775 455544332 4567889999
Q ss_pred EcCceEEEEeC---CeE---EEEec---------------cCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCc
Q 041537 263 LTECRVVNVSD---KEI---TMKIK---------------STGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRR 319 (547)
Q Consensus 263 ~~~~~V~~v~~---~~v---~~~~~---------------~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g 319 (547)
++++.++++.. +.+ ++... .+|+..+++||.||||+|+.+.. ..+....++ +.+|
T Consensus 338 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~--~~~~~~~gl~~~~~g 415 (467)
T TIGR01318 338 LFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHA--MPWLAGHGITLDSWG 415 (467)
T ss_pred EecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCc--cccccccCccCCCCC
Confidence 99999999853 223 33211 02344569999999999975542 123333443 6678
Q ss_pred cEEeC----CCCCcCCCCCEEEeCccCc
Q 041537 320 VLATN----EWLRVKECENVYALGDCAT 343 (547)
Q Consensus 320 ~i~Vd----~~l~~~~~~~VfaiGD~a~ 343 (547)
+|.|| .+++| +.|+|||+|||+.
T Consensus 416 ~i~vd~~~~~~~~T-~~~gVfa~GD~~~ 442 (467)
T TIGR01318 416 RIITGDVSYLPYQT-TNPKIFAGGDAVR 442 (467)
T ss_pred CEEeCCccccCccC-CCCCEEEECCcCC
Confidence 99999 67888 8999999999975
No 65
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.3e-28 Score=230.43 Aligned_cols=273 Identities=20% Similarity=0.301 Sum_probs=190.6
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcC---CCC---C--ccC-------C--Chhhhh-cc----------c
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSP---QNY---F--AFT-------P--LLPSVT-CG----------T 76 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~---~~~---~--~~~-------p--~l~~~~-~g----------~ 76 (547)
.+..++.+|||||.+||+||++.+..|.+|.++|- .+. + +++ | ++++.+ .| .
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 45679999999999999999999999999999983 221 0 111 1 222211 01 0
Q ss_pred -cCccccchhH-------HHHHHhCC---------CcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccC
Q 041537 77 -VEARSIAEPV-------RNIIKKRN---------AEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVG 139 (547)
Q Consensus 77 -~~~~~~~~~~-------~~~~~~~~---------~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG 139 (547)
.+...+.... .+.+...+ ..+.++++..+++|+. ++...... | .++.+.++++|||||
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h--~I~at~~~--g-k~~~~ta~~fvIatG 170 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPH--KIKATNKK--G-KERFLTAENFVIATG 170 (503)
T ss_pred CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccc--eEEEecCC--C-ceEEeecceEEEEec
Confidence 0001122221 12121111 1356667777777765 44433322 4 356899999999999
Q ss_pred CCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhh
Q 041537 140 AQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLIN 219 (547)
Q Consensus 140 ~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~ 219 (547)
.+|++|+|||..|+..+-. +..+++..|. +.+|||+|++++|+|+.|.-+
T Consensus 171 ~RPrYp~IpG~~Ey~ITSD----------------DlFsl~~~PG-------kTLvVGa~YVaLECAgFL~gf------- 220 (503)
T KOG4716|consen 171 LRPRYPDIPGAKEYGITSD----------------DLFSLPYEPG-------KTLVVGAGYVALECAGFLKGF------- 220 (503)
T ss_pred CCCCCCCCCCceeeeeccc----------------ccccccCCCC-------ceEEEccceeeeehhhhHhhc-------
Confidence 9999999999888765322 2233443333 889999999999999999987
Q ss_pred hCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEE---eCCe--EEEEeccCCeEEEEeeceE
Q 041537 220 LYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV---SDKE--ITMKIKSTGAVCSIPHGLV 294 (547)
Q Consensus 220 ~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v---~~~~--v~~~~~~~G~~~~i~~D~v 294 (547)
+.+|++..|+ -+|..||.++.+.+.+.++++||++...+.+++| +++. |...++.+++..+-++|+|
T Consensus 221 -------g~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTV 292 (503)
T KOG4716|consen 221 -------GYDVTVMVRS-ILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTV 292 (503)
T ss_pred -------CCCcEEEEEE-eecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhh
Confidence 6788887765 4678999999999999999999999988665555 4454 3333433444444779999
Q ss_pred EEccCCCCCcchHHH-HHHhCC--C-CCccEEeCCCCCcCCCCCEEEeCccCc
Q 041537 295 LWSTGVGTRPAIKDF-MEQIGQ--G-KRRVLATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 295 v~a~G~~~~p~~~~l-~~~~~~--~-~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
+||+| +.++++++ +..+|+ + ..|.|+||+.-++ +.|.|||+||+..
T Consensus 293 l~AiG--R~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~ 342 (503)
T KOG4716|consen 293 LWAIG--RKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILE 342 (503)
T ss_pred hhhhc--cccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecceec
Confidence 99999 77777776 445565 2 4578999998888 9999999999975
No 66
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=9.3e-27 Score=257.54 Aligned_cols=273 Identities=17% Similarity=0.207 Sum_probs=171.7
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
.+.++|+|||||+|||++|..|++.|++|+|+|+.+..++.. .+.++... .+.++.....+++...| ++|..+...
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l-~~gip~~~-l~~~~~~~~~~~~~~~G--v~~~~~~~v 400 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLL-TFGIPAFK-LDKSLLARRREIFSAMG--IEFELNCEV 400 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCcee-eecCCCcc-CCHHHHHHHHHHHHHCC--eEEECCCEe
Confidence 356899999999999999999999999999999987765431 12222111 22344444556667777 555433211
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc-cCCCCCCccc-cccccCCHHHHHHHH-HHHHHHHHHccCCCC
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV-NTFGTPGVLE-NCHFLKELEDAQKIR-RTVTDCFEKAVLPGL 182 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~-~~~~ipG~~e-~~~~~~~~~~a~~l~-~~l~~~~~~~~~~~~ 182 (547)
. ..+.+.+ ....||.||+|||+.. ..+++||... +++ ++..+. ...............
T Consensus 401 ~-----~~i~~~~--------~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~------~a~~~l~~~~~~~~~~~~~~~~ 461 (654)
T PRK12769 401 G-----KDISLES--------LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVY------DALPFLIANTKQVMGLEELPEE 461 (654)
T ss_pred C-----CcCCHHH--------HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeE------EhHHHHHHHHhhhccCcccccc
Confidence 1 1122221 1357999999999964 4567888642 211 111110 111010000000000
Q ss_pred CHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCcc-CCcccHHHHHHHHHHHHhCCcE
Q 041537 183 SEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHI-LNSFDERISSFAEKKFQRDGIE 261 (547)
Q Consensus 183 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i-l~~~~~~~~~~~~~~l~~~GV~ 261 (547)
+.....+++|+|||||++|+|+|..+.++. ..+|+++++.+.. +|..+.. .+.+++.||+
T Consensus 462 -~~~~~~gk~VvVIGgG~~a~d~A~~a~r~g-------------a~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~ 522 (654)
T PRK12769 462 -PFINTAGLNVVVLGGGDTAMDCVRTALRHG-------------ASNVTCAYRRDEANMPGSKKE-----VKNAREEGAN 522 (654)
T ss_pred -ccccCCCCeEEEECCcHHHHHHHHHHHHcC-------------CCeEEEeEecCCCCCCCCHHH-----HHHHHHcCCe
Confidence 000134679999999999999999887762 1379999987653 5554332 3567889999
Q ss_pred EEcCceEEEEeC---CeE---EEEec------c---------CCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCC
Q 041537 262 VLTECRVVNVSD---KEI---TMKIK------S---------TGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKR 318 (547)
Q Consensus 262 v~~~~~V~~v~~---~~v---~~~~~------~---------~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~ 318 (547)
+++++.++++.. +.+ ++... . .|+..++++|+||+|+|+.++. ..+++.+++ +.+
T Consensus 523 ~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~--~~~~~~~gl~~~~~ 600 (654)
T PRK12769 523 FEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHG--MPWLESHGVTVDKW 600 (654)
T ss_pred EEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCc--cccccccCCcCCCC
Confidence 999999999852 333 33211 1 2444569999999999975542 124444444 678
Q ss_pred ccEEeCC----CCCcCCCCCEEEeCccCc
Q 041537 319 RVLATNE----WLRVKECENVYALGDCAT 343 (547)
Q Consensus 319 g~i~Vd~----~l~~~~~~~VfaiGD~a~ 343 (547)
|.|.||+ +++| +.|+|||+|||+.
T Consensus 601 G~i~vd~~~~~~~~T-s~~gVfAaGD~~~ 628 (654)
T PRK12769 601 GRIIADVESQYRYQT-SNPKIFAGGDAVR 628 (654)
T ss_pred CCEEeCCCcccCccc-CCCCEEEcCCcCC
Confidence 8999986 4788 8999999999975
No 67
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.95 E-value=1.4e-26 Score=246.88 Aligned_cols=277 Identities=17% Similarity=0.224 Sum_probs=166.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
..++|+|||||++|+++|..|++.|++|+|+|+.+..++.. .+.++...+ +.++.....+.++..+ +++..+....
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l-~~gip~~~~-~~~~~~~~~~~~~~~G--v~~~~~~~v~ 217 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL-MYGIPNMKL-DKAIVDRRIDLLSAEG--IDFVTNTEIG 217 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee-eccCCCccC-CHHHHHHHHHHHHhCC--CEEECCCEeC
Confidence 45799999999999999999999999999999988654321 111111111 1233444445667777 5554443322
Q ss_pred EECCCCEEEEecCCCCCCceeeeecCEEEEccCCC-ccCCCCCCccc-cccccCCHHHHHHHHHHHHHHHHHccCCCCCH
Q 041537 107 IDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNTFGTPGVLE-NCHFLKELEDAQKIRRTVTDCFEKAVLPGLSE 184 (547)
Q Consensus 107 id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~-~~~~~ipG~~e-~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~ 184 (547)
.+ +..+ . ....||.||+|||+. +..+++||.+. +++ .+..+...............++
T Consensus 218 ~~-----~~~~-----~---~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~------~~~~~l~~~~~~~~~~~~~~~~- 277 (485)
T TIGR01317 218 VD-----ISAD-----E---LKEQFDAVVLAGGATKPRDLPIPGRELKGIH------YAMEFLPSATKALLGKDFKDII- 277 (485)
T ss_pred Cc-----cCHH-----H---HHhhCCEEEEccCCCCCCcCCCCCcCCCCcE------eHHHHHHHHhhhhccccccccc-
Confidence 21 1111 1 246799999999998 78889999642 222 1111111110000000000000
Q ss_pred HHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcc---------cHH--HHHHHHH
Q 041537 185 EERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF---------DER--ISSFAEK 253 (547)
Q Consensus 185 ~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~---------~~~--~~~~~~~ 253 (547)
.....+++|+|||||++|+|+|..+.++. ..+|++++..+..+... +.. ......+
T Consensus 278 ~~~~~gk~VvViGgG~~g~d~a~~a~~~g-------------a~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e 344 (485)
T TIGR01317 278 FIKAKGKKVVVIGGGDTGADCVGTSLRHG-------------AASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEE 344 (485)
T ss_pred cccCCCCEEEEECCcHHHHHHHHHHHHcC-------------CCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHh
Confidence 01135679999999999999988877763 35899999887754321 111 1122333
Q ss_pred HHHhCCcEE-EcCceEEEEeCC---eEE---EEe-----cc---------CCeEEEEeeceEEEccCCCCCcchHHHHHH
Q 041537 254 KFQRDGIEV-LTECRVVNVSDK---EIT---MKI-----KS---------TGAVCSIPHGLVLWSTGVGTRPAIKDFMEQ 312 (547)
Q Consensus 254 ~l~~~GV~v-~~~~~V~~v~~~---~v~---~~~-----~~---------~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~ 312 (547)
..+..||++ ++++.+.++..+ .++ +.. .. .|+..++++|+||||+|+. .|+. .++..
T Consensus 345 ~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~-~p~~-~~~~~ 422 (485)
T TIGR01317 345 AAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV-GPEQ-ILLDD 422 (485)
T ss_pred hhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC-CCcc-ccccc
Confidence 334457654 457777777532 222 110 01 2334469999999999964 2333 34445
Q ss_pred hCC--CCCccEEe-CCCCCcCCCCCEEEeCccCc
Q 041537 313 IGQ--GKRRVLAT-NEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 313 ~~~--~~~g~i~V-d~~l~~~~~~~VfaiGD~a~ 343 (547)
+++ +.+|++.+ |++++| +.|+|||+|||+.
T Consensus 423 ~gl~~~~~G~i~~~~~~~~T-s~~gVfAaGD~~~ 455 (485)
T TIGR01317 423 FGVKKTRRGNISAGYDDYST-SIPGVFAAGDCRR 455 (485)
T ss_pred cCcccCCCCCEEecCCCceE-CCCCEEEeeccCC
Confidence 555 56788855 567888 9999999999975
No 68
>PRK13984 putative oxidoreductase; Provisional
Probab=99.95 E-value=3.3e-26 Score=251.64 Aligned_cols=276 Identities=16% Similarity=0.167 Sum_probs=168.8
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEE
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEA 104 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 104 (547)
..+.++|+|||+|+||+++|..|++.|++|+|+|+++...+... +.+... ..+.++.....+.++..+ ++++.+..
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~-~~i~~~-~~~~~~~~~~~~~~~~~g--v~~~~~~~ 355 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR-YGIPSY-RLPDEALDKDIAFIEALG--VKIHLNTR 355 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe-ecCCcc-cCCHHHHHHHHHHHHHCC--cEEECCCE
Confidence 34578999999999999999999999999999999887643221 111111 112333344445667777 55443322
Q ss_pred EEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC-ccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCC
Q 041537 105 IKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLS 183 (547)
Q Consensus 105 ~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~-~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 183 (547)
...+ +..+. ....||+||+|||+. ++.+++||.+.. ..+...+....++ +.+....
T Consensus 356 v~~~-----~~~~~--------~~~~yD~vilAtGa~~~r~l~i~G~~~~-gv~~a~~~l~~~~----~~~~~~~----- 412 (604)
T PRK13984 356 VGKD-----IPLEE--------LREKHDAVFLSTGFTLGRSTRIPGTDHP-DVIQALPLLREIR----DYLRGEG----- 412 (604)
T ss_pred eCCc-----CCHHH--------HHhcCCEEEEEcCcCCCccCCCCCcCCc-CeEeHHHHHHHHH----hhhccCC-----
Confidence 2111 11111 146799999999997 577889997422 1122222222222 2111100
Q ss_pred HHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEec--CCccCCcccHHHHHHHHHHHHhCCcE
Q 041537 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQS--GDHILNSFDERISSFAEKKFQRDGIE 261 (547)
Q Consensus 184 ~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~--~~~il~~~~~~~~~~~~~~l~~~GV~ 261 (547)
.....+++|+|||||++|+|+|..+.++... . ....+|+++.. ....+|....++ ..+.+.||+
T Consensus 413 -~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~----~----~g~~~V~v~~~~r~~~~~~~~~~e~-----~~~~~~GV~ 478 (604)
T PRK13984 413 -PKPKIPRSLVVIGGGNVAMDIARSMARLQKM----E----YGEVNVKVTSLERTFEEMPADMEEI-----EEGLEEGVV 478 (604)
T ss_pred -CcCCCCCcEEEECCchHHHHHHHHHHhcccc----c----cCceEEEEeccccCcccCCCCHHHH-----HHHHHcCCE
Confidence 0012356999999999999999999875310 0 01246777643 223334332222 223467999
Q ss_pred EEcCceEEEEeC--CeE---EEEec-----c---------CCeEEEEeeceEEEccCCCCCcchHHHHHHh--CC-CCCc
Q 041537 262 VLTECRVVNVSD--KEI---TMKIK-----S---------TGAVCSIPHGLVLWSTGVGTRPAIKDFMEQI--GQ-GKRR 319 (547)
Q Consensus 262 v~~~~~V~~v~~--~~v---~~~~~-----~---------~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~--~~-~~~g 319 (547)
+++++.++++.. +.+ .+... . +|+..++++|.||||+|+. |++..+...+ ++ ..+|
T Consensus 479 i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~--p~~~~l~~~~~~~l~~~~G 556 (604)
T PRK13984 479 IYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA--PDYSYLPEELKSKLEFVRG 556 (604)
T ss_pred EEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC--CChhhhhhhhccCccccCC
Confidence 999988888753 232 22210 1 1334469999999999964 5443343333 23 2568
Q ss_pred cEEeCCCCCcCCCCCEEEeCccCcc
Q 041537 320 VLATNEWLRVKECENVYALGDCATI 344 (547)
Q Consensus 320 ~i~Vd~~l~~~~~~~VfaiGD~a~~ 344 (547)
+|.||+++|| +.|+|||+|||+..
T Consensus 557 ~i~vd~~~~T-s~~gVfAaGD~~~~ 580 (604)
T PRK13984 557 RILTNEYGQT-SIPWLFAGGDIVHG 580 (604)
T ss_pred eEEeCCCCcc-CCCCEEEecCcCCc
Confidence 8999999998 89999999999863
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.94 E-value=2.1e-25 Score=245.75 Aligned_cols=274 Identities=16% Similarity=0.209 Sum_probs=172.9
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
.+.++|+|||||++||++|..|++.|++|+|+|+++..+.. +.+.++...++ .++.....+++...| +++..+...
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~-l~~gip~~~l~-~~~~~~~~~~~~~~G--v~~~~~~~v 383 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-LTFGIPPFKLD-KTVLSQRREIFTAMG--IDFHLNCEI 383 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe-eeccCCcccCC-HHHHHHHHHHHHHCC--eEEEcCCcc
Confidence 35789999999999999999999999999999999876532 22222222222 344444556777787 554333211
Q ss_pred EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc-cCCCCCCccccccccCCHHHHHHHHHHHHH-HHHHccCCCCC
Q 041537 106 KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV-NTFGTPGVLENCHFLKELEDAQKIRRTVTD-CFEKAVLPGLS 183 (547)
Q Consensus 106 ~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~-~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~-~~~~~~~~~~~ 183 (547)
. +.+.+.+ ....||.||+|||+.. ..+++||.+.. .+..+..+...... ..........+
T Consensus 384 ~-----~~~~~~~--------l~~~~DaV~latGa~~~~~~~i~g~~~~-----gv~~a~~~l~~~~~~~~~~~~~~~~~ 445 (639)
T PRK12809 384 G-----RDITFSD--------LTSEYDAVFIGVGTYGMMRADLPHEDAP-----GVIQALPFLTAHTRQLMGLPESEEYP 445 (639)
T ss_pred C-----CcCCHHH--------HHhcCCEEEEeCCCCCCCCCCCCCCccC-----CcEeHHHHHHHHHHhhccCccccccc
Confidence 1 1222221 1457999999999974 45678886421 11112222211111 00000000000
Q ss_pred HHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCcc-CCcccHHHHHHHHHHHHhCCcEE
Q 041537 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHI-LNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 184 ~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i-l~~~~~~~~~~~~~~l~~~GV~v 262 (547)
.....+++++|+|+|.+++|+|..+.++. -.+|+++++.+.. +|..+.++ ..+++.||++
T Consensus 446 -~~~~~gk~vvViGgG~~a~d~a~~~~~~G-------------a~~Vt~v~rr~~~~~~~~~~e~-----~~a~~eGv~~ 506 (639)
T PRK12809 446 -LTDVEGKRVVVLGGGDTTMDCLRTSIRLN-------------AASVTCAYRRDEVSMPGSRKEV-----VNAREEGVEF 506 (639)
T ss_pred -cccCCCCeEEEECCcHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHH-----HHHHHcCCeE
Confidence 01235689999999999999998877652 1479999987654 55544333 2357789999
Q ss_pred EcCceEEEEeC---CeEE---EEecc---------------CCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCc
Q 041537 263 LTECRVVNVSD---KEIT---MKIKS---------------TGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRR 319 (547)
Q Consensus 263 ~~~~~V~~v~~---~~v~---~~~~~---------------~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g 319 (547)
++++.++++.. +.+. +.... .|+++++++|+||+|+|..+.. ..+++.+++ +.+|
T Consensus 507 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~--~~~~~~~gl~~~~~G 584 (639)
T PRK12809 507 QFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHA--MPWLQGSGIKLDKWG 584 (639)
T ss_pred EeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCc--cccccccCcccCCCC
Confidence 99999999852 3332 21110 2445579999999999965432 124444444 6778
Q ss_pred cEEeCC----CCCcCCCCCEEEeCccCc
Q 041537 320 VLATNE----WLRVKECENVYALGDCAT 343 (547)
Q Consensus 320 ~i~Vd~----~l~~~~~~~VfaiGD~a~ 343 (547)
.|.||+ +++| +.|+|||+|||+.
T Consensus 585 ~i~vd~~~~~~~~T-s~~gVfA~GD~~~ 611 (639)
T PRK12809 585 LIQTGDVGYLPTQT-HLKKVFAGGDAVH 611 (639)
T ss_pred CEEeCCCcccCccc-CCCCEEEcCCCCC
Confidence 899986 4788 8999999999975
No 70
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=227.63 Aligned_cols=268 Identities=23% Similarity=0.319 Sum_probs=206.2
Q ss_pred EEEECCchHHHHHHHhcCC--CCCeEEEEcCCCC--CccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 31 VVLLGTGWAGISFLKDLDV--SSYDVQVVSPQNY--FAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 31 VvIIGgG~aGl~aA~~L~~--~g~~Vtlid~~~~--~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
++|||+|++|+++|..|++ ...+|+++..++. +...++.+.+..+......+..... .....++.+ +...+|+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~v~~ 78 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDV-RTGTEVTS 78 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEE-eeCCEEEE
Confidence 5899999999999998874 5566776665544 4445666666665554444444433 223444333 35678999
Q ss_pred EECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHH
Q 041537 107 IDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEE 186 (547)
Q Consensus 107 id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 186 (547)
+|+.++.+.+.+ + ++.||+||+|||+++..++ ....+..+.++..+++..++.....
T Consensus 79 id~~~~~v~~~~----g----~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 135 (415)
T COG0446 79 IDPENKVVLLDD----G----EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEP-------------- 135 (415)
T ss_pred ecCCCCEEEECC----C----cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhc--------------
Confidence 999999999876 3 7999999999999998876 2223557788899998888876532
Q ss_pred HhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCccc-HHHHHHHHHHHHhCCcEEEcC
Q 041537 187 RKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFD-ERISSFAEKKFQRDGIEVLTE 265 (547)
Q Consensus 187 ~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~-~~~~~~~~~~l~~~GV~v~~~ 265 (547)
.++++|||+|+.|+|+|..+... +++|++++..+++++.+. +.+.+.+.+.++++||+++++
T Consensus 136 ---~~~v~vvG~G~~gle~A~~~~~~--------------G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 198 (415)
T COG0446 136 ---PKDVVVVGAGPIGLEAAEAAAKR--------------GKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLG 198 (415)
T ss_pred ---cCeEEEECCcHHHHHHHHHHHHc--------------CCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeC
Confidence 35999999999999999999986 789999999999999877 899999999999999999999
Q ss_pred ceEEEEeCCe--EEE--EeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhC--C-CCCccEEeCCCCCcCCCCCEEEe
Q 041537 266 CRVVNVSDKE--ITM--KIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIG--Q-GKRRVLATNEWLRVKECENVYAL 338 (547)
Q Consensus 266 ~~V~~v~~~~--v~~--~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~--~-~~~g~i~Vd~~l~~~~~~~Vfai 338 (547)
+.+.+++.+. ... ....++.. +++|++++++|.+++ + .+..+.+ . ...|++.||+++++...++|||+
T Consensus 199 ~~~~~i~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~g~~p~--~-~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~ 273 (415)
T COG0446 199 TKVVGVEGKGNTLVVERVVGIDGEE--IKADLVIIGPGERPN--V-VLANDALPGLALAGGAVLVDERGGTSKDPDVYAA 273 (415)
T ss_pred CceEEEEcccCcceeeEEEEeCCcE--EEeeEEEEeeccccc--H-HHHhhCccceeccCCCEEEccccccCCCCCEEec
Confidence 9999998753 111 12223554 999999999996554 3 4544543 3 56678999999998338999999
Q ss_pred CccCccC
Q 041537 339 GDCATID 345 (547)
Q Consensus 339 GD~a~~~ 345 (547)
|||+..+
T Consensus 274 GD~~~~~ 280 (415)
T COG0446 274 GDVAEIP 280 (415)
T ss_pred cceEeee
Confidence 9999875
No 71
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=2.5e-24 Score=226.45 Aligned_cols=298 Identities=15% Similarity=0.158 Sum_probs=182.2
Q ss_pred CCCCCCCeEEEECCchHHHHHHHhcCC--CCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEE
Q 041537 23 EKEREKKRVVLLGTGWAGISFLKDLDV--SSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFW 100 (547)
Q Consensus 23 ~~~~~~~~VvIIGgG~aGl~aA~~L~~--~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (547)
.+..++++|+|||||||||+||..|++ .|++|+|+|+.+..++ -+.+.+.+.......+...+..++...+ ++|+
T Consensus 21 ~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG-lvr~gvaP~~~~~k~v~~~~~~~~~~~~--v~~~ 97 (491)
T PLN02852 21 SSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG-LVRSGVAPDHPETKNVTNQFSRVATDDR--VSFF 97 (491)
T ss_pred CCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc-eEeeccCCCcchhHHHHHHHHHHHHHCC--eEEE
Confidence 444567899999999999999999975 7999999999987543 2333444444444556666777777766 6654
Q ss_pred EEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc-cCCCCCCcc-ccccccCCHHHHHHHHHHHHHHHHHcc
Q 041537 101 EAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV-NTFGTPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAV 178 (547)
Q Consensus 101 ~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~-~~~~ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~ 178 (547)
.... + ++.+++++ ....||+||||||+.+ +.+++||.+ ++++ +..+ +...+...-....
T Consensus 98 ~nv~--v---g~dvtl~~--------L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~---~a~~---fl~~~ng~~d~~~ 158 (491)
T PLN02852 98 GNVT--L---GRDVSLSE--------LRDLYHVVVLAYGAESDRRLGIPGEDLPGVL---SARE---FVWWYNGHPDCVH 158 (491)
T ss_pred cCEE--E---CccccHHH--------HhhhCCEEEEecCCCCCCCCCCCCCCCCCeE---EHHH---HHHHhhcchhhhh
Confidence 4221 1 23344433 1457999999999986 678899964 2222 2222 2222111000000
Q ss_pred CCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhh------hCCCCC-CC-ceEEEEecCCccC-CcccHHH--
Q 041537 179 LPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLIN------LYPTVK-DL-VRITLIQSGDHIL-NSFDERI-- 247 (547)
Q Consensus 179 ~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~------~~~~~~-~~-~~V~lv~~~~~il-~~~~~~~-- 247 (547)
+ +. ....+++|+|||+|++|+|+|..|.+...+ +.. .+..++ .+ .+|+++.|....- +...+++
T Consensus 159 ~---~~-~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~-l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elre 233 (491)
T PLN02852 159 L---PP-DLKSSDTAVVLGQGNVALDCARILLRPTDE-LASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRE 233 (491)
T ss_pred h---hh-cccCCCEEEEECCCHHHHHHHHHHHhCccc-cccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHH
Confidence 0 00 012467999999999999999998764110 000 000111 13 4688888876321 1111111
Q ss_pred -----------------------------------HHHHHHHHHh---------CCcEEEcCceEEEEeC-----Ce---
Q 041537 248 -----------------------------------SSFAEKKFQR---------DGIEVLTECRVVNVSD-----KE--- 275 (547)
Q Consensus 248 -----------------------------------~~~~~~~l~~---------~GV~v~~~~~V~~v~~-----~~--- 275 (547)
.+.+.+...+ ++|.+++...+++|.+ +.
T Consensus 234 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~ 313 (491)
T PLN02852 234 LLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAG 313 (491)
T ss_pred HhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEE
Confidence 1112222222 5799999999999852 12
Q ss_pred EEEEec--------------cCCeEEEEeeceEEEccCCCCCcchHH-HHHHhCC--CCCccEEeCCCCCcCCCCCEEEe
Q 041537 276 ITMKIK--------------STGAVCSIPHGLVLWSTGVGTRPAIKD-FMEQIGQ--GKRRVLATNEWLRVKECENVYAL 338 (547)
Q Consensus 276 v~~~~~--------------~~G~~~~i~~D~vv~a~G~~~~p~~~~-l~~~~~~--~~~g~i~Vd~~l~~~~~~~Vfai 338 (547)
+.+... .+|+..+++||.||.+.|+.+.|+... +....++ +.+|+|.+|+.++| +.|+|||+
T Consensus 314 l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAa 392 (491)
T PLN02852 314 VKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVV 392 (491)
T ss_pred EEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEe
Confidence 333311 135666799999999999976565431 2222233 66799999988877 89999999
Q ss_pred CccCccCccc
Q 041537 339 GDCATIDQRK 348 (547)
Q Consensus 339 GD~a~~~~~~ 348 (547)
|||...+...
T Consensus 393 GDi~~Gp~gv 402 (491)
T PLN02852 393 GWLKRGPTGI 402 (491)
T ss_pred eeEecCCCCe
Confidence 9999877543
No 72
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=6.2e-24 Score=231.51 Aligned_cols=264 Identities=20% Similarity=0.247 Sum_probs=165.5
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEE
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEA 104 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 104 (547)
....++|+|||+|++||++|..|++.|++|+|+|+++.+++.. .+.++...+ +.++.....+.+.+.+ +++..+..
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l-~~gip~~~~-~~~~~~~~l~~~~~~G--v~~~~~~~ 209 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM-RYGIPAYRL-PREVLDAEIQRILDLG--VEVRLGVR 209 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee-eecCCCccC-CHHHHHHHHHHHHHCC--CEEEeCCE
Confidence 3457899999999999999999999999999999998765421 222222222 2233333334556677 43332211
Q ss_pred EEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc-cCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCC
Q 041537 105 IKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV-NTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLS 183 (547)
Q Consensus 105 ~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~-~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 183 (547)
...+ +.... ....||++|+|+|+.. ....++|.... ....+..+...... ..
T Consensus 210 ~~~~-----~~~~~--------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~-----gv~~~~~~l~~~~~----~~----- 262 (564)
T PRK12771 210 VGED-----ITLEQ--------LEGEFDAVFVAIGAQLGKRLPIPGEDAA-----GVLDAVDFLRAVGE----GE----- 262 (564)
T ss_pred ECCc-----CCHHH--------HHhhCCEEEEeeCCCCCCcCCCCCCccC-----CcEEHHHHHHHhhc----cC-----
Confidence 1111 11111 1345999999999975 45577775321 11111111111110 00
Q ss_pred HHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCc-cCCcccHHHHHHHHHHHHhCCcEE
Q 041537 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH-ILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 184 ~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
....+++++|||+|.+++|.+..+.++. ..+|+++.+.+. .++.....+ +.+.+.||++
T Consensus 263 --~~~~gk~v~ViGgg~~a~d~a~~a~~lg-------------a~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki 322 (564)
T PRK12771 263 --PPFLGKRVVVIGGGNTAMDAARTARRLG-------------AEEVTIVYRRTREDMPAHDEEI-----EEALREGVEI 322 (564)
T ss_pred --CcCCCCCEEEECChHHHHHHHHHHHHcC-------------CCEEEEEEecCcccCCCCHHHH-----HHHHHcCCEE
Confidence 1134679999999999999998777763 257888888764 244433332 3345689999
Q ss_pred EcCceEEEEeCCe-----EE---EEec---c-------CCeEEEEeeceEEEccCCCCCcchHHHHHH-hCC-CCCccEE
Q 041537 263 LTECRVVNVSDKE-----IT---MKIK---S-------TGAVCSIPHGLVLWSTGVGTRPAIKDFMEQ-IGQ-GKRRVLA 322 (547)
Q Consensus 263 ~~~~~V~~v~~~~-----v~---~~~~---~-------~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~-~~~-~~~g~i~ 322 (547)
++++.+.++..+. ++ +... . +|+..++++|+||||+|..+. . .++.+ .++ +.+|+|.
T Consensus 323 ~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~--~-~~~~~~~gl~~~~G~i~ 399 (564)
T PRK12771 323 NWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDID--S-AGLESVPGVEVGRGVVQ 399 (564)
T ss_pred EecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCc--h-hhhhhccCcccCCCCEE
Confidence 9999999996532 12 1110 1 344457999999999996543 3 33332 344 5678999
Q ss_pred eCC-CCCcCCCCCEEEeCccCc
Q 041537 323 TNE-WLRVKECENVYALGDCAT 343 (547)
Q Consensus 323 Vd~-~l~~~~~~~VfaiGD~a~ 343 (547)
||+ ++++ +.|+|||+|||+.
T Consensus 400 vd~~~~~t-s~~~Vfa~GD~~~ 420 (564)
T PRK12771 400 VDPNFMMT-GRPGVFAGGDMVP 420 (564)
T ss_pred eCCCCccC-CCCCEEeccCcCC
Confidence 998 5666 9999999999975
No 73
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.92 E-value=2.1e-24 Score=204.67 Aligned_cols=290 Identities=20% Similarity=0.267 Sum_probs=200.1
Q ss_pred CCCCCeEEEECCchHHHHHHHhcC-CCC-CeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEE
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLD-VSS-YDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEA 102 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~-~~g-~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 102 (547)
..+..+|+|||||.+|++.|..+. +.+ -+|-+||+..+|.|+|.+.-+-.|....++-.....+++... ..+++.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~---a~wi~e 112 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKG---ATWIKE 112 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCC---cHHHHH
Confidence 345689999999999999998886 333 469999999999999988777666554444344444444332 556788
Q ss_pred EEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccc-----cccccCCHHHHHHHHHHHHHHHHHc
Q 041537 103 EAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLE-----NCHFLKELEDAQKIRRTVTDCFEKA 177 (547)
Q Consensus 103 ~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e-----~~~~~~~~~~a~~l~~~l~~~~~~~ 177 (547)
+|+.++|++++|.+++ |+ +|+|||||||+|.+.++-.|+|+.| .+...++...+.+..+.+.+.-
T Consensus 113 kv~~f~P~~N~v~t~g----g~---eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk--- 182 (446)
T KOG3851|consen 113 KVKEFNPDKNTVVTRG----GE---EISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFK--- 182 (446)
T ss_pred HHHhcCCCcCeEEccC----Cc---EEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhcc---
Confidence 9999999999999987 55 9999999999999999988999764 3455566666666555554321
Q ss_pred cCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHh
Q 041537 178 VLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQR 257 (547)
Q Consensus 178 ~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~ 257 (547)
.+.-+----.+++-|--|-.=..++.+.+.++ ...++.++|+.-+..+.+..- +...+.+++..++
T Consensus 183 -----------~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk-~gvRd~a~iiy~Tsl~~iFgV--k~Y~~AL~k~~~~ 248 (446)
T KOG3851|consen 183 -----------KGNAIFTFPNTPIKCAGAPQKIMYISESYFRK-RGVRDNANIIYNTSLPTIFGV--KHYADALEKVIQE 248 (446)
T ss_pred -----------CCceEEecCCCccccCCCchhhhhhhHHHHHH-hCccccccEEEecCccceecH--HHHHHHHHHHHHh
Confidence 11111111112211111111111222222222 223456788877777766442 4677888888899
Q ss_pred CCcEEEcCceEEEEeCC--eEEEEeccC-CeEEEEeeceEEEccCCCCCcchHHHHHHhCC-CCCccEEeCC-CCCcCCC
Q 041537 258 DGIEVLTECRVVNVSDK--EITMKIKST-GAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ-GKRRVLATNE-WLRVKEC 332 (547)
Q Consensus 258 ~GV~v~~~~~V~~v~~~--~v~~~~~~~-G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~-~~~g~i~Vd~-~l~~~~~ 332 (547)
+.|++.......||..+ ..++++++. |...+++++++-.+.-.+.+ +.+....+ +..|++.||. +||++.+
T Consensus 249 rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p----e~l~~s~~adktGfvdVD~~TlQs~ky 324 (446)
T KOG3851|consen 249 RNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP----EVLANSDLADKTGFVDVDQSTLQSKKY 324 (446)
T ss_pred cceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh----hhhhcCcccCcccceecChhhhccccC
Confidence 99999999999999654 345555544 77778999999866544222 45555566 7889999997 8999999
Q ss_pred CCEEEeCccCccC
Q 041537 333 ENVYALGDCATID 345 (547)
Q Consensus 333 ~~VfaiGD~a~~~ 345 (547)
||||+||||++.|
T Consensus 325 pNVFgiGDc~n~P 337 (446)
T KOG3851|consen 325 PNVFGIGDCMNLP 337 (446)
T ss_pred CCceeeccccCCC
Confidence 9999999999865
No 74
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.9e-24 Score=192.57 Aligned_cols=282 Identities=19% Similarity=0.249 Sum_probs=205.0
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC----CccCC-------ChhhhhccccCccccchhHHHHHHhCCCc
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY----FAFTP-------LLPSVTCGTVEARSIAEPVRNIIKKRNAE 96 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~----~~~~p-------~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (547)
+.+|+|||+|||+.++|.++++...+.+|+|---- .+.+- -.|.++-| +.-.++.+.++++..+.|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdg-i~G~~l~d~mrkqs~r~G-- 84 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDG-ITGPELMDKMRKQSERFG-- 84 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcc-cccHHHHHHHHHHHHhhc--
Confidence 45899999999999999999999999999985210 01110 11122222 222467778888888888
Q ss_pred EEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHH
Q 041537 97 IQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEK 176 (547)
Q Consensus 97 v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~ 176 (547)
.+++...|.++|...+-+.+... .+.+.+|.+|+|||+..+...+||..|..+. .+-+..|.-+
T Consensus 85 t~i~tEtVskv~~sskpF~l~td------~~~v~~~avI~atGAsAkRl~~pg~ge~~fW----------qrGiSaCAVC 148 (322)
T KOG0404|consen 85 TEIITETVSKVDLSSKPFKLWTD------ARPVTADAVILATGASAKRLHLPGEGEGEFW----------QRGISACAVC 148 (322)
T ss_pred ceeeeeehhhccccCCCeEEEec------CCceeeeeEEEecccceeeeecCCCCcchHH----------hcccchhhcc
Confidence 66788899999999987666541 2389999999999999988888986443221 1122222222
Q ss_pred ccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHH
Q 041537 177 AVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQ 256 (547)
Q Consensus 177 ~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~ 256 (547)
... ....+.+-.+|||||.+++|-|..|..+ ..+|++++|.+++ +.++..+++.+
T Consensus 149 DGa-----apifrnk~laVIGGGDsA~EEA~fLtky--------------askVyii~Rrd~f------RAs~~Mq~ra~ 203 (322)
T KOG0404|consen 149 DGA-----APIFRNKPLAVIGGGDSAMEEALFLTKY--------------ASKVYIIHRRDHF------RASKIMQQRAE 203 (322)
T ss_pred cCc-----chhhcCCeeEEEcCcHHHHHHHHHHHhh--------------ccEEEEEEEhhhh------hHHHHHHHHHh
Confidence 111 1235667899999999999999999988 4699999999976 45555555544
Q ss_pred -hCCcEEEcCceEEEEeCC-----eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCC-CCCc
Q 041537 257 -RDGIEVLTECRVVNVSDK-----EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNE-WLRV 329 (547)
Q Consensus 257 -~~GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~-~l~~ 329 (547)
..+|+++.|+.+.+..++ ++.+++..+|+...++.+-+++++| -.|+++.+..+..++.+|+|.+-+ .-.|
T Consensus 204 ~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IG--H~Pat~~l~gqve~d~~GYi~t~pgts~T 281 (322)
T KOG0404|consen 204 KNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIG--HSPATKFLKGQVELDEDGYIVTRPGTSLT 281 (322)
T ss_pred cCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEec--CCchhhHhcCceeeccCceEEeccCcccc
Confidence 458999999988888665 3677777778888899999999999 678775555556678999999986 4455
Q ss_pred CCCCCEEEeCccCccCcccchhhhhHh
Q 041537 330 KECENVYALGDCATIDQRKVMEDISTI 356 (547)
Q Consensus 330 ~~~~~VfaiGD~a~~~~~~~~~~~~~~ 356 (547)
+.|++||+||+.....++..++..++
T Consensus 282 -svpG~FAAGDVqD~kyRQAvTaAgsG 307 (322)
T KOG0404|consen 282 -SVPGVFAAGDVQDKKYRQAVTAAGSG 307 (322)
T ss_pred -cccceeeccccchHHHHHHHhhhccc
Confidence 99999999999876555444443333
No 75
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.8e-24 Score=204.24 Aligned_cols=277 Identities=18% Similarity=0.271 Sum_probs=203.2
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChh----hhh-ccccCccccchhHHHHHHhCCCcEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLP----SVT-CGTVEARSIAEPVRNIIKKRNAEIQFW 100 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~----~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (547)
...++|+||||||||-++|.+.+++|.+.-|+-.+ |+++.+-. .+. ....+-..+...++...+++.+++- -
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer--fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDim-n 285 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVM-N 285 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh--hCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhh-h
Confidence 35689999999999999999999999987777533 66654321 111 1222233455567777777774431 1
Q ss_pred EEEEEEEECC-----CCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHH
Q 041537 101 EAEAIKIDAA-----KNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFE 175 (547)
Q Consensus 101 ~~~v~~id~~-----~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~ 175 (547)
--+++.+.+. ...|++.+ |. .+....+|+|||++.+..++||.+++- ++ .
T Consensus 286 ~qra~~l~~a~~~~~l~ev~l~n----Ga---vLkaktvIlstGArWRn~nvPGE~e~r-------------nK-----G 340 (520)
T COG3634 286 LQRASKLEPAAVEGGLIEVELAN----GA---VLKARTVILATGARWRNMNVPGEDEYR-------------NK-----G 340 (520)
T ss_pred hhhhhcceecCCCCccEEEEecC----Cc---eeccceEEEecCcchhcCCCCchHHHh-------------hC-----C
Confidence 2245556552 23677776 55 899999999999999999999976431 00 0
Q ss_pred HccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHH
Q 041537 176 KAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKF 255 (547)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l 255 (547)
-+.-|+. +..-.++|+|+|||||++|+|.|..|+-.. .+||+++-.+.+ +.-+.+++.|
T Consensus 341 VayCPHC-DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL------kAD~VLq~kl 399 (520)
T COG3634 341 VAYCPHC-DGPLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL------KADAVLQDKL 399 (520)
T ss_pred eeeCCCC-CCcccCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhh------hhHHHHHHHH
Confidence 0111111 122367889999999999999999999875 489999877654 4455677777
Q ss_pred HhC-CcEEEcCceEEEEeCC-----eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCc
Q 041537 256 QRD-GIEVLTECRVVNVSDK-----EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRV 329 (547)
Q Consensus 256 ~~~-GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~ 329 (547)
+.. +|++++|..-++|.++ ++.+.+..+|+.+.++-+-|++-+| -.|++++|-....++.+|-|.||.+..|
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG--L~PNT~WLkg~vel~~rGEIivD~~g~T 477 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIG--LLPNTEWLKGAVELNRRGEIIVDARGET 477 (520)
T ss_pred hcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEe--cccChhHhhchhhcCcCccEEEecCCCc
Confidence 765 8999999999999876 3566777778887888888998899 5888888866677789999999999999
Q ss_pred CCCCCEEEeCccCccCcccchhhhh
Q 041537 330 KECENVYALGDCATIDQRKVMEDIS 354 (547)
Q Consensus 330 ~~~~~VfaiGD~a~~~~~~~~~~~~ 354 (547)
+.|+|||+|||+..+..++.-.+.
T Consensus 478 -svpGvFAAGD~T~~~yKQIIIamG 501 (520)
T COG3634 478 -NVPGVFAAGDCTTVPYKQIIIAMG 501 (520)
T ss_pred -CCCceeecCcccCCccceEEEEec
Confidence 999999999999988766544433
No 76
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.91 E-value=1.3e-22 Score=233.09 Aligned_cols=269 Identities=16% Similarity=0.126 Sum_probs=171.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEE-EEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFW-EAEAI 105 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~ 105 (547)
..++|+|||||||||+||.+|++.|++|+|||+++..+.+...........+..+....+...+...+ ++++. ..+|.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~-~v~v~~~t~V~ 240 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMP-EVTLLPRTTAF 240 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCC-CcEEEcCCEEE
Confidence 45799999999999999999999999999999988766543221111111122233333444444443 24444 56787
Q ss_pred EEECCCCEEEEecCC-------C--CCCceeeeecCEEEEccCCCccCCCCCCccc-cccccCCHHHHHHHHHHHHHHHH
Q 041537 106 KIDAAKNEVFCKSNI-------D--KETRDFSLEYDYLIIAVGAQVNTFGTPGVLE-NCHFLKELEDAQKIRRTVTDCFE 175 (547)
Q Consensus 106 ~id~~~~~v~~~~~~-------~--~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e-~~~~~~~~~~a~~l~~~l~~~~~ 175 (547)
.++..+....+.... . ..+....+.||+||||||+.++.+++||.+. .++.. ..+.. .+.
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~---~~~~~---~l~---- 310 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLA---GAART---YLN---- 310 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEc---hHHHH---HHH----
Confidence 776543222111000 0 0011226899999999999999999999752 23222 11111 111
Q ss_pred HccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCC-ceEEEEecCCccCCcccHHHHHHHHHH
Q 041537 176 KAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDL-VRITLIQSGDHILNSFDERISSFAEKK 254 (547)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~-~~V~lv~~~~~il~~~~~~~~~~~~~~ 254 (547)
... ...+++++|||+|++|+|+|..|... + ..|++++..+.+ ...+.+.
T Consensus 311 ~~~--------~~~gk~VvViG~G~~g~e~A~~L~~~--------------G~~vV~vv~~~~~~--------~~~l~~~ 360 (985)
T TIGR01372 311 RYG--------VAPGKRIVVATNNDSAYRAAADLLAA--------------GIAVVAIIDARADV--------SPEARAE 360 (985)
T ss_pred hhC--------cCCCCeEEEECCCHHHHHHHHHHHHc--------------CCceEEEEccCcch--------hHHHHHH
Confidence 000 12456999999999999999999876 4 467888877643 2345677
Q ss_pred HHhCCcEEEcCceEEEEeCCe----EEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCC----
Q 041537 255 FQRDGIEVLTECRVVNVSDKE----ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEW---- 326 (547)
Q Consensus 255 l~~~GV~v~~~~~V~~v~~~~----v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~---- 326 (547)
|++.||++++++.|+++.+++ |++... +|+..+++||.|+++.|. .|++ .|...++.. +..|+.
T Consensus 361 L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~-~g~~~~i~~D~V~va~G~--~Pnt-~L~~~lg~~----~~~~~~~~~~ 432 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGGKRVSGVAVARN-GGAGQRLEADALAVSGGW--TPVV-HLFSQRGGK----LAWDAAIAAF 432 (985)
T ss_pred HHHcCCEEEcCCeEEEEecCCcEEEEEEEec-CCceEEEECCEEEEcCCc--Cchh-HHHHhcCCC----eeeccccCce
Confidence 899999999999999997642 445421 233345999999999995 5555 465555431 222221
Q ss_pred CCcCCCCCEEEeCccCcc
Q 041537 327 LRVKECENVYALGDCATI 344 (547)
Q Consensus 327 l~~~~~~~VfaiGD~a~~ 344 (547)
...++.|+||++|||+..
T Consensus 433 ~~~t~v~gVyaaGD~~g~ 450 (985)
T TIGR01372 433 LPGDAVQGCILAGAANGL 450 (985)
T ss_pred ecCCCCCCeEEeeccCCc
Confidence 112368999999999865
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.89 E-value=3.7e-22 Score=210.77 Aligned_cols=252 Identities=13% Similarity=0.187 Sum_probs=165.1
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCCh----------------------h-------------
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLL----------------------P------------- 70 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l----------------------~------------- 70 (547)
...++|+|||||++||+||++|.+.|++|+|+|+++..++.... +
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 44689999999999999999999999999999998765433211 0
Q ss_pred --hhhcc------------ccCccccchhHHHHHHhCCCc--EEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEE
Q 041537 71 --SVTCG------------TVEARSIAEPVRNIIKKRNAE--IQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYL 134 (547)
Q Consensus 71 --~~~~g------------~~~~~~~~~~~~~~~~~~~~~--v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~L 134 (547)
.++.. .....++...++.+.++.++. ++ ++.+|+.|++.++...+..... +....+..||+|
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~-~~t~V~~V~~~~~~w~V~~~~~-~~~~~~~~~d~V 165 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVR-FETEVVRVEPVDGKWRVQSKNS-GGFSKDEIFDAV 165 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEE-ecCEEEEEeecCCeEEEEEEcC-CCceEEEEcCEE
Confidence 00000 001134566677778787754 44 4789999998766544432111 111235689999
Q ss_pred EEccC--CCccCCCCCCcccc------ccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHH
Q 041537 135 IIAVG--AQVNTFGTPGVLEN------CHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFA 206 (547)
Q Consensus 135 ViAtG--~~~~~~~ipG~~e~------~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A 206 (547)
|+||| +.|+.|.+||+++. ...+++. +..++++|+|||+|.+|+|+|
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~-------------------------~~~~gk~VvVVG~G~Sg~diA 220 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVP-------------------------DPFKNEVVVVIGNFASGADIS 220 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCCceEEEecccCCc-------------------------cccCCCEEEEECCCcCHHHHH
Confidence 99999 67889999997532 1111111 114567999999999999999
Q ss_pred HHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC-CeEEEEeccCCe
Q 041537 207 AELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD-KEITMKIKSTGA 285 (547)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~-~~v~~~~~~~G~ 285 (547)
.+|... ..+|+++++...+.. .+.+.....++..+..|..+.+ +.|++.+ |+
T Consensus 221 ~~L~~~--------------a~~V~l~~r~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~g~V~f~D---G~ 273 (461)
T PLN02172 221 RDIAKV--------------AKEVHIASRASESDT----------YEKLPVPQNNLWMHSEIDTAHEDGSIVFKN---GK 273 (461)
T ss_pred HHHHHh--------------CCeEEEEEeeccccc----------cccCcCCCCceEECCcccceecCCeEEECC---CC
Confidence 999987 469999998764311 0111122345566677776644 4577765 87
Q ss_pred EEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCC--------cCC-CCCEEEeCcc
Q 041537 286 VCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLR--------VKE-CENVYALGDC 341 (547)
Q Consensus 286 ~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~--------~~~-~~~VfaiGD~ 341 (547)
. +++|.||+|||+... . .++. ..|.+.||++.- .+. .|+++.+|=+
T Consensus 274 ~--~~~D~Ii~~TGy~~~--~-pfL~-----~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~ 328 (461)
T PLN02172 274 V--VYADTIVHCTGYKYH--F-PFLE-----TNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLP 328 (461)
T ss_pred C--ccCCEEEECCcCCcc--c-cccC-----cccceeeCCCcchhhHHhhcCCCCCCcEEEEecc
Confidence 5 899999999997543 2 2322 234455554311 223 3788888855
No 78
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.89 E-value=4.4e-22 Score=194.66 Aligned_cols=343 Identities=20% Similarity=0.310 Sum_probs=240.1
Q ss_pred CCeEEEECCchHHHHHHHhcC--CCCCeEEEEcCCCCCcc--CCChhhhh-ccc--------------------cCcccc
Q 041537 28 KKRVVLLGTGWAGISFLKDLD--VSSYDVQVVSPQNYFAF--TPLLPSVT-CGT--------------------VEARSI 82 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~--~~g~~Vtlid~~~~~~~--~p~l~~~~-~g~--------------------~~~~~~ 82 (547)
....+|||+|.+..++++..+ ..+..|.+|..++..+| +|+..++- .+. .++..+
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~F 257 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGF 257 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcc
Confidence 346899999999999988887 67788999998877766 34433321 110 011222
Q ss_pred chhHHHHHHhCCCcEEEEEE-EEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC-CC----Cccccccc
Q 041537 83 AEPVRNIIKKRNAEIQFWEA-EAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG-TP----GVLENCHF 156 (547)
Q Consensus 83 ~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~-ip----G~~e~~~~ 156 (547)
...-+++-+..+..|-++++ +|..||...+.|.+.+ |. +|.||.++||||.+|.... +. .+.+....
T Consensus 258 fvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnD----G~---~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~ 330 (659)
T KOG1346|consen 258 FVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILND----GT---TIGYDKCLIATGVRPKKLQVFEEASEEVKQKITY 330 (659)
T ss_pred eeChhHCcccccCceEEEeccceEEeecccCeEEecC----Cc---EeehhheeeecCcCcccchhhhhcCHHhhhheeE
Confidence 22223332222224666665 7899999999999998 66 9999999999999996543 22 22345677
Q ss_pred cCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecC
Q 041537 157 LKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSG 236 (547)
Q Consensus 157 ~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 236 (547)
++.+.|..++++.+.+ .++|.|||+|+.|-|+|+.|.+..+ ..+.+|+-+...
T Consensus 331 fr~p~DF~rlek~~ae-----------------k~siTIiGnGflgSELacsl~rk~r----------~~g~eV~QvF~E 383 (659)
T KOG1346|consen 331 FRYPADFKRLEKGLAE-----------------KQSITIIGNGFLGSELACSLKRKYR----------NEGVEVHQVFEE 383 (659)
T ss_pred EecchHHHHHHHhhhh-----------------cceEEEEcCcchhhhHHHHHHHhhh----------ccCcEEEEeecc
Confidence 8888898888776543 2599999999999999999998753 147888866655
Q ss_pred CccCC-cccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHh
Q 041537 237 DHILN-SFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQI 313 (547)
Q Consensus 237 ~~il~-~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~ 313 (547)
...+. -+++.++++..+.+++.||.|+.+..|.++.. .++.++- ++|.+ +..|+||.|+| -.|++ +|.+..
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL-~dG~~--l~tD~vVvavG--~ePN~-ela~~s 457 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKL-SDGSE--LRTDLVVVAVG--EEPNS-ELAEAS 457 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEe-cCCCe--eeeeeEEEEec--CCCch-hhcccc
Confidence 54333 36779999999999999999999999988843 4455543 55876 99999999999 56766 566655
Q ss_pred CC--CC-CccEEeCCCCCcCCCCCEEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHh
Q 041537 314 GQ--GK-RRVLATNEWLRVKECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELY 390 (547)
Q Consensus 314 ~~--~~-~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (547)
++ ++ -|++.||..|+. ..|||++||++.+... ..|..+++++++++-.++-+..+|.--
T Consensus 458 gLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~----------------~LGrRRVehhdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 458 GLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDG----------------VLGRRRVEHHDHAVVSGRLAGENMTGA 519 (659)
T ss_pred cceeecccCcEEeeheeec--ccceeeecchhhhhcc----------------cccceeccccccceeeceecccccccc
Confidence 65 43 378999999987 6899999999987542 368889999999998888776554321
Q ss_pred hhcccccccccccCCCCCCCCcccchhhhhhhhccccccCCCCCchhHHHH
Q 041537 391 LKNKHLNDVTDLLKDPQGNPRREVDIEGFTLALSHVDTQMKSLPATAQVAA 441 (547)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~aq~A~ 441 (547)
.+.- .. -++||...|+.-+ -+.++.+|+- +|.....|.
T Consensus 520 akpy--~h-qsmFWsdlgP~ig-------yeaIGlvDSS---LpTVgVfA~ 557 (659)
T KOG1346|consen 520 AKPY--KH-QSMFWSDLGPEIG-------YEAIGLVDSS---LPTVGVFAL 557 (659)
T ss_pred cCCc--cc-cceeeeccCcccc-------cceeeecccC---CCcceeeec
Confidence 1100 00 1477877665322 2356666653 444444443
No 79
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.86 E-value=6.8e-21 Score=209.58 Aligned_cols=304 Identities=16% Similarity=0.188 Sum_probs=175.9
Q ss_pred CCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC--------------CccCCChhhhh---ccccCccccch--
Q 041537 24 KEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY--------------FAFTPLLPSVT---CGTVEARSIAE-- 84 (547)
Q Consensus 24 ~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~--------------~~~~p~l~~~~---~g~~~~~~~~~-- 84 (547)
++.+.++|+|||||||||+||++|++.|++|||+|+.+. ..|.+++++.. .|.+....+..
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~ 458 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRW 458 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccc
Confidence 345678999999999999999999999999999998531 24455555554 33333222221
Q ss_pred ------hHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCC-CccCCCCCCcccccccc
Q 041537 85 ------PVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA-QVNTFGTPGVLENCHFL 157 (547)
Q Consensus 85 ------~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~-~~~~~~ipG~~e~~~~~ 157 (547)
.++.++. .+.+++|..+...+.| ++.++. ....||+||||||+ .++.+++||.+ ...+
T Consensus 459 ~k~~l~~i~~il~-~g~~v~~~~gv~lG~d-----it~edl-------~~~gyDAV~IATGA~kpr~L~IPGed--a~GV 523 (1028)
T PRK06567 459 DKNNLDILRLILE-RNNNFKYYDGVALDFN-----ITKEQA-------FDLGFDHIAFCIGAGQPKVLDIENFE--AKGV 523 (1028)
T ss_pred hHHHHHHHHHHHh-cCCceEEECCeEECcc-----CCHHHH-------hhcCCCEEEEeCCCCCCCCCCCCCcc--CCCe
Confidence 2223333 3334666544332222 222221 15679999999999 69999999965 2334
Q ss_pred CCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHH--------HHHHhhhhhCCCC-----
Q 041537 158 KELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHD--------YIQEDLINLYPTV----- 224 (547)
Q Consensus 158 ~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~--------~~~~~~~~~~~~~----- 224 (547)
.+..+++...+.. ..++....+ ....+++|||||||++|+|+|.+... ++.+...+.||..
T Consensus 524 ~sA~DfL~~l~~~-~~~~~~~~~-----~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia 597 (1028)
T PRK06567 524 KTASDFLMTLQSG-GAFLKNSNT-----NMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIA 597 (1028)
T ss_pred EEHHHHHHHHhhc-ccccccccC-----cccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHH
Confidence 4444433321111 011111000 01234689999999999999995443 1111122222210
Q ss_pred -----------------------CCCceEEEEecCCcc-CCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC---e--
Q 041537 225 -----------------------KDLVRITLIQSGDHI-LNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDK---E-- 275 (547)
Q Consensus 225 -----------------------~~~~~V~lv~~~~~i-l~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~---~-- 275 (547)
...-.|+++.|...- +|... ...+.+ +...+.||+++.+..+.++..+ .
T Consensus 598 ~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~-~~~eEv-~~A~eEGV~f~~~~~P~~i~~d~~g~v~ 675 (1028)
T PRK06567 598 EEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYK-LNHEEL-IYALALGVDFKENMQPLRINVDKYGHVE 675 (1028)
T ss_pred HHHHHHHHhhcchhccchhhhhhccCCceEEEecCChhhCCCCC-CCHHHH-HHHHHcCcEEEecCCcEEEEecCCCeEE
Confidence 011228888887642 34321 001122 3345679999999999998532 2
Q ss_pred -EEEEec------------cCC-------------eEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCc
Q 041537 276 -ITMKIK------------STG-------------AVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRV 329 (547)
Q Consensus 276 -v~~~~~------------~~G-------------~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~ 329 (547)
+++... +.+ ++.+|+||+||.|+|. .|++..+ . .+..+-.
T Consensus 676 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~--~~~~~~~-------~-----~~~s~~~ 741 (1028)
T PRK06567 676 SVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI--ENNTQFD-------E-----DKYSYFG 741 (1028)
T ss_pred EEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc--CCccccc-------c-----ccccccc
Confidence 223211 111 4467999999999994 5544221 0 0001111
Q ss_pred CCCCCEEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhhhcccccc
Q 041537 330 KECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYLKNKHLND 398 (547)
Q Consensus 330 ~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (547)
+.+++|+- .++.||.+++..||.|+.||..++...
T Consensus 742 -d~~~~f~G---------------------------------tvv~A~as~k~~~~~i~~~l~~~~~~~ 776 (1028)
T PRK06567 742 -DCNPKYSG---------------------------------SVVKALASSKEGYDAINKKLINNNPSF 776 (1028)
T ss_pred -CCCCcccc---------------------------------HHHHHHHHHHhHHHHHHHHHhhCCCCC
Confidence 33344432 378999999999999999998876654
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.85 E-value=8e-21 Score=198.06 Aligned_cols=304 Identities=17% Similarity=0.171 Sum_probs=203.6
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEE
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEA 104 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 104 (547)
..+.++|.|||||||||+||..|++.|++||++|+.+..+. -+++..+. ...+.++.....+++.+.| ++|.....
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG-ll~yGIP~-~kl~k~i~d~~i~~l~~~G--v~~~~~~~ 195 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG-LLLYGIPD-FKLPKDILDRRLELLERSG--VEFKLNVR 195 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce-eEEecCch-hhccchHHHHHHHHHHHcC--eEEEEcce
Confidence 34558999999999999999999999999999999887654 23444333 3334577778888888888 66544333
Q ss_pred EEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC-ccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCC
Q 041537 105 IKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLS 183 (547)
Q Consensus 105 ~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~-~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 183 (547)
.+. .++++. ..-.||.+++++|+. |+..++||.+ ...+..|..+...+.......... .
T Consensus 196 vG~-----~it~~~--------L~~e~Dav~l~~G~~~~~~l~i~g~d-----~~gv~~A~dfL~~~~~~~~~~~~~--~ 255 (457)
T COG0493 196 VGR-----DITLEE--------LLKEYDAVFLATGAGKPRPLDIPGED-----AKGVAFALDFLTRLNKEVLGDFAE--D 255 (457)
T ss_pred ECC-----cCCHHH--------HHHhhCEEEEeccccCCCCCCCCCcC-----CCcchHHHHHHHHHHHHHhccccc--c
Confidence 222 233322 145679999999985 6778899864 233445555444443322221110 0
Q ss_pred HHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCcc--CCcccHHHHHHHHHHHHhCCcE
Q 041537 184 EEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHI--LNSFDERISSFAEKKFQRDGIE 261 (547)
Q Consensus 184 ~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i--l~~~~~~~~~~~~~~l~~~GV~ 261 (547)
......+++|+|||||.|+++++....++.. .+|+.+.+...- .+..+........+....+|+.
T Consensus 256 ~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~ 322 (457)
T COG0493 256 RTPPAKGKRVVVIGGGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVE 322 (457)
T ss_pred cCCCCCCCeEEEECCCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhcCCc
Confidence 1111344899999999999999988877642 367766422211 1222333455566777888998
Q ss_pred EEcCceEEEEeC---CeEEEE---ec----------------cCCeEEEEeeceEEEccCCCCCcchHHHHH-HhCCCCC
Q 041537 262 VLTECRVVNVSD---KEITMK---IK----------------STGAVCSIPHGLVLWSTGVGTRPAIKDFME-QIGQGKR 318 (547)
Q Consensus 262 v~~~~~V~~v~~---~~v~~~---~~----------------~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~-~~~~~~~ 318 (547)
........++.. +.|.-. .. ..|++..+++|+|+.|.|+.+.+....... .+..+.+
T Consensus 323 ~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~ 402 (457)
T COG0493 323 RLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKR 402 (457)
T ss_pred ccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCC
Confidence 888877777753 233311 10 135667899999999999866643311111 2344788
Q ss_pred ccEEeCCCC-CcCCCCCEEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhhcchhhHHhh
Q 041537 319 RVLATNEWL-RVKECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILIRYPQVELYL 391 (547)
Q Consensus 319 g~i~Vd~~l-~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (547)
|.+.+|+.+ +| +.|++||.|||.... .++..|+.+++.++..++.++
T Consensus 403 g~i~~~~~~~~t-s~~~vfa~gD~~~g~-------------------------~~vv~ai~eGr~aak~i~~~~ 450 (457)
T COG0493 403 GRIKVDENLQQT-SIPGVFAGGDAVRGA-------------------------ALVVWAIAEGREAAKAIDKEL 450 (457)
T ss_pred Cceecccccccc-cCCCeeeCceeccch-------------------------hhhhhHHhhchHHHHhhhHHH
Confidence 999999988 66 899999999998742 468899999999999998443
No 81
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.81 E-value=1.5e-20 Score=177.71 Aligned_cols=136 Identities=24% Similarity=0.383 Sum_probs=89.8
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC-Chh-hhhccccCccccch-----hHHHHHHhCCCcEEE-EE
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP-LLP-SVTCGTVEARSIAE-----PVRNIIKKRNAEIQF-WE 101 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p-~l~-~~~~g~~~~~~~~~-----~~~~~~~~~~~~v~~-~~ 101 (547)
||||||||+||++||.+|++.+++|+|||+.+...+.. .++ .............. .+.+.+...+ +++ +.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRG--VEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHT--HEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccce--EEEeec
Confidence 69999999999999999999999999999887544321 111 11111101011111 2233334455 555 67
Q ss_pred EEEEEEECCCCEEE-----EecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHH
Q 041537 102 AEAIKIDAAKNEVF-----CKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTV 170 (547)
Q Consensus 102 ~~v~~id~~~~~v~-----~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l 170 (547)
+++..|+...+.+. ..... .....++.||+||||||+.++.|++||. +.........++..+.+.+
T Consensus 79 ~~v~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~ 149 (201)
T PF07992_consen 79 AKVVSIDPESKRVVCPAVTIQVVE--TGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELL 149 (201)
T ss_dssp HTEEEEEESTTEEEETCEEEEEEE--TTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHS
T ss_pred cccccccccccccccCcccceeec--cCCceEecCCeeeecCccccceeecCCC-ccccccccccccccccccc
Confidence 89999999988541 11000 1124589999999999999999999998 4555567777777766553
No 82
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.81 E-value=2.9e-19 Score=191.18 Aligned_cols=161 Identities=20% Similarity=0.310 Sum_probs=99.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChh------------h--------------hhcc-----c
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLP------------S--------------VTCG-----T 76 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~------------~--------------~~~g-----~ 76 (547)
+++|+|||||++||++|+.|.+.|++++++|+++..++..... . ++.. .
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 4799999999999999999999999999999998876542211 0 0000 0
Q ss_pred cCccccchhHHHHHHhCCC--cEEEEEEEEEEEECCC-----C--EEEEecCCCCCCceeeeecCEEEEccCC--CccCC
Q 041537 77 VEARSIAEPVRNIIKKRNA--EIQFWEAEAIKIDAAK-----N--EVFCKSNIDKETRDFSLEYDYLIIAVGA--QVNTF 145 (547)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~v~~id~~~-----~--~v~~~~~~~~g~~~~~i~yD~LViAtG~--~~~~~ 145 (547)
....++..+++.+.++++. .++ .+++|+.+.... . .|+++. +....+..||+||+|+|. .|+.|
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~----~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTEN----DGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETT----TTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeec----CCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 1113466677888887764 454 377888886532 1 344432 222346679999999995 46777
Q ss_pred C--CCCcccccc-ccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHH
Q 041537 146 G--TPGVLENCH-FLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYI 213 (547)
Q Consensus 146 ~--ipG~~e~~~-~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~ 213 (547)
. +||++...- .+++ ..++ ..+..++|+|+|||+|.||+|+|.+|....
T Consensus 156 ~~~~~G~e~F~G~i~HS----~~yr----------------~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a 206 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHS----KDYR----------------DPEPFKGKRVLVVGGGNSGADIAVELSRVA 206 (531)
T ss_dssp ----CTGGGHCSEEEEG----GG------------------TGGGGTTSEEEEESSSHHHHHHHHHHTTTS
T ss_pred hhhhhhhhcCCeeEEcc----ccCc----------------ChhhcCCCEEEEEeCCHhHHHHHHHHHHhc
Confidence 4 888763210 0111 0111 123367789999999999999999997753
No 83
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.80 E-value=2.2e-19 Score=192.38 Aligned_cols=298 Identities=19% Similarity=0.208 Sum_probs=184.4
Q ss_pred CCCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEE
Q 041537 23 EKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEA 102 (547)
Q Consensus 23 ~~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 102 (547)
|...+.++|.|||+|||||+||-+|.+.|+.|||.||.+..++ -+.|.++.-.++.. +...-.+++...| ++|+..
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg-ll~ygipnmkldk~-vv~rrv~ll~~eg--i~f~tn 1855 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG-LLMYGIPNMKLDKF-VVQRRVDLLEQEG--IRFVTN 1855 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc-eeeecCCccchhHH-HHHHHHHHHHhhC--ceEEee
Confidence 3446779999999999999999999999999999999998664 35556655554443 5556667788888 666532
Q ss_pred EEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC-ccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCC
Q 041537 103 EAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPG 181 (547)
Q Consensus 103 ~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~-~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 181 (547)
. .| .+.|.++. ..-.+|.+|+|+|+. |+..++||-+ ++.+.-|.++...-..++....+.
T Consensus 1856 ~--ei---gk~vs~d~--------l~~~~daiv~a~gst~prdlpv~grd-----~kgv~fame~l~~ntk~lld~~~d- 1916 (2142)
T KOG0399|consen 1856 T--EI---GKHVSLDE--------LKKENDAIVLATGSTTPRDLPVPGRD-----LKGVHFAMEFLEKNTKSLLDSVLD- 1916 (2142)
T ss_pred c--cc---cccccHHH--------HhhccCeEEEEeCCCCCcCCCCCCcc-----ccccHHHHHHHHHhHHhhhccccc-
Confidence 2 11 22344432 256799999999986 7888999965 455555655544333322222210
Q ss_pred CCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCC---------ccCCcccH-----HH
Q 041537 182 LSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGD---------HILNSFDE-----RI 247 (547)
Q Consensus 182 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~---------~il~~~~~-----~~ 247 (547)
-.....++++|+|||||.+|-++.+.-.+...+ .|.-++--| .+.|..+. .-
T Consensus 1917 -~~~~~~~gkkvivigggdtg~dcigtsvrhg~~-------------sv~n~ellp~pp~~ra~~npwpqwprvfrvdyg 1982 (2142)
T KOG0399|consen 1917 -GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK-------------SVGNFELLPQPPPERAPDNPWPQWPRVFRVDYG 1982 (2142)
T ss_pred -cceeccCCCeEEEECCCCccccccccchhhccc-------------eecceeecCCCCcccCCCCCCccCceEEEeecc
Confidence 011235788999999999999998887776432 222222111 11221110 00
Q ss_pred HHHHHHHHHhCCcEEE-----------------cCceEEEEe--C---CeEEEEeccCCeEEEEeeceEEEccCCCCCcc
Q 041537 248 SSFAEKKFQRDGIEVL-----------------TECRVVNVS--D---KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPA 305 (547)
Q Consensus 248 ~~~~~~~l~~~GV~v~-----------------~~~~V~~v~--~---~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~ 305 (547)
.+.+.+. .|-+.+ ++-+..+|+ . +..++.. .++.++.|+||+||+|.|+..+..
T Consensus 1983 h~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~e-i~~see~~eadlv~lamgf~gpe~ 2058 (2142)
T KOG0399|consen 1983 HAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKE-INNSEEIIEADLVILAMGFVGPEK 2058 (2142)
T ss_pred hHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEE-cCCcceeeecceeeeeccccCcch
Confidence 1111111 121111 111222221 1 1122222 234445799999999999865542
Q ss_pred hHHHHHHhCC--CCCccEEeC-CCCCcCCCCCEEEeCccCccCcccchhhhhHhhhhcccCCCCCcchhhhhhhhhhhhh
Q 041537 306 IKDFMEQIGQ--GKRRVLATN-EWLRVKECENVYALGDCATIDQRKVMEDISTIFAAADKDNSGTLTVEEFQDVIDDILI 382 (547)
Q Consensus 306 ~~~l~~~~~~--~~~g~i~Vd-~~l~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 382 (547)
...+++++ +.++.|..- +.+.+ +.+.|||+|||-.... -++++|..+++
T Consensus 2059 --~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrrgqs-------------------------lvvwai~egrq 2110 (2142)
T KOG0399|consen 2059 --SVIEQLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRRGQS-------------------------LVVWAIQEGRQ 2110 (2142)
T ss_pred --hhhhhcCcccCccccccCCCccccc-cccceeecccccCCce-------------------------EEEEEehhhhH
Confidence 24555666 566666553 45666 8999999999987642 37899999999
Q ss_pred cchhhHH
Q 041537 383 RYPQVEL 389 (547)
Q Consensus 383 ~~~~~~~ 389 (547)
++.+++.
T Consensus 2111 ~a~~vd~ 2117 (2142)
T KOG0399|consen 2111 AARQVDE 2117 (2142)
T ss_pred HHHHHHH
Confidence 9999986
No 84
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.78 E-value=3.2e-19 Score=165.36 Aligned_cols=261 Identities=17% Similarity=0.298 Sum_probs=167.9
Q ss_pred eEEEECCchHHHHHHHhcC--CCCCeEEEEcCCCCC----ccCCC---hhhhhccccCccccchhHHHHHHhCCCcEEEE
Q 041537 30 RVVLLGTGWAGISFLKDLD--VSSYDVQVVSPQNYF----AFTPL---LPSVTCGTVEARSIAEPVRNIIKKRNAEIQFW 100 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~--~~g~~Vtlid~~~~~----~~~p~---l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 100 (547)
+.+|||||+||.+||.+|+ ++..+|+||..++.. .|++. +..+-....+..++...++ +|+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~----------~~~ 70 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFR----------RFL 70 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHH----------HHH
Confidence 4689999999999999998 667899999876532 11111 1111111101111111122 233
Q ss_pred EEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCC
Q 041537 101 EAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLP 180 (547)
Q Consensus 101 ~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 180 (547)
.. |..++...+.+.+++ |. ++.|++|++++|.+|... ..|....+..+++.+.++.++..+.
T Consensus 71 ~~-v~~~~s~ehci~t~~----g~---~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~--------- 132 (334)
T KOG2755|consen 71 ND-VVTWDSSEHCIHTQN----GE---KLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLV--------- 132 (334)
T ss_pred Hh-hhhhccccceEEecC----Cc---eeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHh---------
Confidence 33 667788888899887 55 999999999999999653 4445677888889999999998874
Q ss_pred CCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-ccHHHHHHHHHHHHhC-
Q 041537 181 GLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS-FDERISSFAEKKFQRD- 258 (547)
Q Consensus 181 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-~~~~~~~~~~~~l~~~- 258 (547)
+.|.|.|+|-|-+++|++.++.. .+|++....+.|-.. |++.+.+.+...|+..
T Consensus 133 --------kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~ 188 (334)
T KOG2755|consen 133 --------KAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINLRADR 188 (334)
T ss_pred --------hcceEEEEecCchhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhhhccc
Confidence 45799999999999999999975 477777777776553 4555555554444110
Q ss_pred -----------CcEEEcCce-----------------------------------EEEE-eC---CeEEEEeccCCeEEE
Q 041537 259 -----------GIEVLTECR-----------------------------------VVNV-SD---KEITMKIKSTGAVCS 288 (547)
Q Consensus 259 -----------GV~v~~~~~-----------------------------------V~~v-~~---~~v~~~~~~~G~~~~ 288 (547)
.++.+.++. +..+ .+ ..++..+...|...+
T Consensus 189 s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~q 268 (334)
T KOG2755|consen 189 STRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQ 268 (334)
T ss_pred ccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccce
Confidence 011110000 0000 00 001111111121224
Q ss_pred EeeceEEEccCCCCCcchHHH-HHHhCCCCCccEEeCCCCCcCCCCCEEEeCccCccC
Q 041537 289 IPHGLVLWSTGVGTRPAIKDF-MEQIGQGKRRVLATNEWLRVKECENVYALGDCATID 345 (547)
Q Consensus 289 i~~D~vv~a~G~~~~p~~~~l-~~~~~~~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 345 (547)
+.||.++||+|+.+ +.+.+ ...+.+.++|.+.||+.|++ +.|+|||+||++...
T Consensus 269 lt~d~ivSatgvtp--n~e~~~~~~lq~~edggikvdd~m~t-slpdvFa~gDvctt~ 323 (334)
T KOG2755|consen 269 LTCDFIVSATGVTP--NSEWAMNKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCTTT 323 (334)
T ss_pred eeeeEEEeccccCc--CceEEecChhhhccccCeeehhhccc-cccceeeecceeccC
Confidence 88999999999654 44322 33344477889999999999 999999999999853
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.62 E-value=3.7e-16 Score=147.97 Aligned_cols=163 Identities=18% Similarity=0.257 Sum_probs=98.0
Q ss_pred EEECCchHHHHHHHhcCCCCCe-EEEEcCCCCCccC------------CChhh--h------------------hccccC
Q 041537 32 VLLGTGWAGISFLKDLDVSSYD-VQVVSPQNYFAFT------------PLLPS--V------------------TCGTVE 78 (547)
Q Consensus 32 vIIGgG~aGl~aA~~L~~~g~~-Vtlid~~~~~~~~------------p~l~~--~------------------~~g~~~ 78 (547)
+|||||++||++|.+|.+.|.+ |+|||+++..+.. |.... . ......
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 9999998654221 11000 0 011122
Q ss_pred ccccchhHHHHHHhCCCcEEEEEEEEEEEECCCC--EEEEecCCCCCCceeeeecCEEEEccCC--CccCCCCCC-cccc
Q 041537 79 ARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKN--EVFCKSNIDKETRDFSLEYDYLIIAVGA--QVNTFGTPG-VLEN 153 (547)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~--~v~~~~~~~~g~~~~~i~yD~LViAtG~--~~~~~~ipG-~~e~ 153 (547)
..++...++.+.++++.+++ .+.+|+++..++. .|++++ + .++.+|+||+|||. .|+.|.+|| ....
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~-~~~~V~~v~~~~~~w~v~~~~----~---~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~ 152 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIR-FNTRVESVRRDGDGWTVTTRD----G---RTIRADRVVLATGHYSHPRIPDIPGSAFRP 152 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEE-TS--EEEEEEETTTEEEEETT----S----EEEEEEEEE---SSCSB---S-TTGGCSE
T ss_pred HHHHHHHHHHHHhhcCcccc-cCCEEEEEEEeccEEEEEEEe----c---ceeeeeeEEEeeeccCCCCccccccccccc
Confidence 23455667888888886654 4788999987765 455543 3 38899999999996 788888888 3222
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEE
Q 041537 154 CHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLI 233 (547)
Q Consensus 154 ~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv 233 (547)
.+..... .+....++++|+|||+|.+|+|+|..|.+. +.+|+++
T Consensus 153 ~~h~~~~----------------------~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~--------------g~~V~~~ 196 (203)
T PF13738_consen 153 IIHSADW----------------------RDPEDFKGKRVVVVGGGNSAVDIAYALAKA--------------GKSVTLV 196 (203)
T ss_dssp EEEGGG-----------------------STTGGCTTSEEEEE--SHHHHHHHHHHTTT--------------CSEEEEE
T ss_pred eEehhhc----------------------CChhhcCCCcEEEEcChHHHHHHHHHHHhh--------------CCEEEEE
Confidence 1111110 011124557999999999999999999875 5799999
Q ss_pred ecCCc
Q 041537 234 QSGDH 238 (547)
Q Consensus 234 ~~~~~ 238 (547)
.|.+.
T Consensus 197 ~R~~~ 201 (203)
T PF13738_consen 197 TRSPI 201 (203)
T ss_dssp ESS--
T ss_pred ecCCC
Confidence 99874
No 86
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.61 E-value=5.5e-15 Score=150.30 Aligned_cols=238 Identities=15% Similarity=0.204 Sum_probs=126.7
Q ss_pred CCeEEEECCchHHHHHHHhcCCC-CCeEEEEcCCCCCccCCC--hhhh------hcccc---Cc----------------
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVS-SYDVQVVSPQNYFAFTPL--LPSV------TCGTV---EA---------------- 79 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~-g~~Vtlid~~~~~~~~p~--l~~~------~~g~~---~~---------------- 79 (547)
.+|+|+||.||++|+.|..|.+. ..++..+|+++.|.|+|. ++.. ..... +|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 46899999999999999999854 489999999999888752 2221 00000 00
Q ss_pred -------------cccchhHHHHHHhCCCcEEEEEEEEEEEECCCC------EEEEecCCCCCCceeeeecCEEEEccCC
Q 041537 80 -------------RSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKN------EVFCKSNIDKETRDFSLEYDYLIIAVGA 140 (547)
Q Consensus 80 -------------~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~------~v~~~~~~~~g~~~~~i~yD~LViAtG~ 140 (547)
.+...+++...++....++ +..+|+.|++... .|.+.+.. |. ...+.++.||||+|.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~-~~~~V~~I~~~~~~~~~~~~V~~~~~~--g~-~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVR-YGSEVTSIEPDDDGDEDLFRVTTRDSD--GD-GETYRARNVVLATGG 157 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEE-ESEEEEEEEEEEETTEEEEEEEEEETT--S--EEEEEESEEEE----
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceE-ECCEEEEEEEecCCCccEEEEEEeecC--CC-eeEEEeCeEEECcCC
Confidence 1111223333344443365 4778999987653 45553321 21 348999999999998
Q ss_pred CccCCCCCC-cc--ccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhh
Q 041537 141 QVNTFGTPG-VL--ENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDL 217 (547)
Q Consensus 141 ~~~~~~ipG-~~--e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~ 217 (547)
.|..|..-. +. +.++...... .+.. .....++|+|||||.||.|++..|.+..
T Consensus 158 ~P~iP~~~~~~~~~~~v~Hss~~~------~~~~--------------~~~~~~~V~VVGgGQSAAEi~~~L~~~~---- 213 (341)
T PF13434_consen 158 QPRIPEWFQDLPGSPRVFHSSEYL------SRID--------------QSLAGKRVAVVGGGQSAAEIFLDLLRRG---- 213 (341)
T ss_dssp EE---GGGGGGTT-TTEEEGGGHH------HHHT-------------------EEEEEE-SSHHHHHHHHHHHHH-----
T ss_pred CCCCCcchhhcCCCCCEEEehHhh------hccc--------------cccCCCeEEEECCcHhHHHHHHHHHhCC----
Confidence 887664222 21 2222221111 1110 0235569999999999999999998863
Q ss_pred hhhCCCCCCCceEEEEecCCccCCc---------ccHHHHH-------------------------------HHHH----
Q 041537 218 INLYPTVKDLVRITLIQSGDHILNS---------FDERISS-------------------------------FAEK---- 253 (547)
Q Consensus 218 ~~~~~~~~~~~~V~lv~~~~~il~~---------~~~~~~~-------------------------------~~~~---- 253 (547)
+..+|+++.|++.+.|. |+++..+ .+.+
T Consensus 214 --------~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~ 285 (341)
T PF13434_consen 214 --------PEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYE 285 (341)
T ss_dssp --------TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHH
T ss_pred --------CCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHH
Confidence 24799999999876542 2332211 1111
Q ss_pred --HHHhCCcEEEcCceEEEEe--C-CeEE--EEeccCCeEEEEeeceEEEccCCC
Q 041537 254 --KFQRDGIEVLTECRVVNVS--D-KEIT--MKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 254 --~l~~~GV~v~~~~~V~~v~--~-~~v~--~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
...+..+.++.+++|+.++ + +++. +.+..+|+..++++|.||+|||++
T Consensus 286 ~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 286 QRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp HHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred HHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 1123357899999999884 3 2444 445455666789999999999963
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.59 E-value=3e-14 Score=147.96 Aligned_cols=293 Identities=13% Similarity=0.160 Sum_probs=156.1
Q ss_pred CCCCCCCeEEEECCchHHHHHHHhcC-CCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEE
Q 041537 23 EKEREKKRVVLLGTGWAGISFLKDLD-VSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWE 101 (547)
Q Consensus 23 ~~~~~~~~VvIIGgG~aGl~aA~~L~-~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 101 (547)
.+...+++|+||||||||++||.+|. +.|++|+|+|+.+..++ -+.+.+++.......+...+...+...+ ++|.
T Consensus 34 ~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG-LvR~GVaPdh~~~k~v~~~f~~~~~~~~--v~f~- 109 (506)
T PTZ00188 34 TNEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG-LIRYGVAPDHIHVKNTYKTFDPVFLSPN--YRFF- 109 (506)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc-EEEEeCCCCCccHHHHHHHHHHHHhhCC--eEEE-
Confidence 33456789999999999999999764 67999999999988654 2334555554444555566666555554 6664
Q ss_pred EEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCC----------Ccc-----ccccccCCHHHHHHH
Q 041537 102 AEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTP----------GVL-----ENCHFLKELEDAQKI 166 (547)
Q Consensus 102 ~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ip----------G~~-----e~~~~~~~~~~a~~l 166 (547)
+.+ .+ ++.++++. ..-.||.||+|+|+.+..++++ |.+ ...+ ++..+
T Consensus 110 gnv-~V---G~Dvt~ee--------L~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf------~A~df 171 (506)
T PTZ00188 110 GNV-HV---GVDLKMEE--------LRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIF------HARDL 171 (506)
T ss_pred eee-Ee---cCccCHHH--------HHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEE------ehheE
Confidence 211 11 11233322 1347999999999986433311 221 0111 11111
Q ss_pred HHHHHHHHH------H-ccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhh------CCCCC--CCceEE
Q 041537 167 RRTVTDCFE------K-AVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINL------YPTVK--DLVRIT 231 (547)
Q Consensus 167 ~~~l~~~~~------~-~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~------~~~~~--~~~~V~ 231 (547)
...+....+ . +.+... ....+++|||.|++++++|..|..-. +.|.+. +..++ .-.+|+
T Consensus 172 V~WYNg~p~~~~~~~~~ayL~p~-----~~~~~vvVIG~GNVAlDvARiL~~~~-d~L~~TDI~~~aL~~L~~s~v~~V~ 245 (506)
T PTZ00188 172 IYFYNNMYNDVRCKAVDNYLNSF-----ENFTTSIIIGNGNVSLDIARILIKSP-DDLSKTDISSDYLKVIKRHNIKHIY 245 (506)
T ss_pred EEeecCCCCcccccccccccccc-----CCCCcEEEECCCchHHHHHHHHccCH-HHhhcCCCcHHHHHHHHhCCCcEEE
Confidence 000000000 0 001000 13358999999999999999874321 111110 00000 112344
Q ss_pred EEecCCcc--------------CC------------------c---ccH---H----HHHHHHHHHH----------hCC
Q 041537 232 LIQSGDHI--------------LN------------------S---FDE---R----ISSFAEKKFQ----------RDG 259 (547)
Q Consensus 232 lv~~~~~i--------------l~------------------~---~~~---~----~~~~~~~~l~----------~~G 259 (547)
+|-|.... |+ . ++. . ..+.+.+... .+-
T Consensus 246 ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~ 325 (506)
T PTZ00188 246 IVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKI 325 (506)
T ss_pred EEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceE
Confidence 44443210 00 0 000 0 1112222221 134
Q ss_pred cEEEcCceEEEEeC--C---eEEEEec--------cCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCC
Q 041537 260 IEVLTECRVVNVSD--K---EITMKIK--------STGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEW 326 (547)
Q Consensus 260 V~v~~~~~V~~v~~--~---~v~~~~~--------~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~ 326 (547)
+.+++...+.++.+ + ++.+... .+|+..+++||+|+-|+|++..|.. . ++.+ +. +.+..
T Consensus 326 i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~-g----~pFd-~~-~~n~~- 397 (506)
T PTZ00188 326 IEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA-E----NLYN-QS-VQMFK- 397 (506)
T ss_pred EEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCC-C----CCcc-cc-CCCCC-
Confidence 66777777777753 2 2334321 2466677999999999999888754 2 3334 22 32221
Q ss_pred CCc-CCCCCEEEeCccCccCcccchh
Q 041537 327 LRV-KECENVYALGDCATIDQRKVME 351 (547)
Q Consensus 327 l~~-~~~~~VfaiGD~a~~~~~~~~~ 351 (547)
-++ ...|++|+.|-+...|..-+.+
T Consensus 398 grv~~~~~g~Y~~GWiKrGP~GvIgt 423 (506)
T PTZ00188 398 EDIGQHKFAIFKAGWFDKGPKGNIAS 423 (506)
T ss_pred CcccCCCCCcEEeeecCcCCCceecc
Confidence 111 1369999999999988764433
No 88
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=3.4e-14 Score=147.80 Aligned_cols=222 Identities=17% Similarity=0.213 Sum_probs=137.8
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChh-----------h---------------hhccc---
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLP-----------S---------------VTCGT--- 76 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~-----------~---------------~~~g~--- 76 (547)
++.++|+|||||+|||.+|+.|.+.|++++++||.+..++..... . ++...
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 456899999999999999999999999999999987764421111 0 11111
Q ss_pred ---cCccccchhHHHHHHhCCC--cEEEEEEEEEEEECCC-C--EEEEecCCCCCCceeeeecCEEEEccCCC--ccCCC
Q 041537 77 ---VEARSIAEPVRNIIKKRNA--EIQFWEAEAIKIDAAK-N--EVFCKSNIDKETRDFSLEYDYLIIAVGAQ--VNTFG 146 (547)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~~--~v~~~~~~v~~id~~~-~--~v~~~~~~~~g~~~~~i~yD~LViAtG~~--~~~~~ 146 (547)
.+..++...++.+.++.++ .++| +.+|..+++.. + .|...+.. + ...+.-||.||+|||-. |+.|.
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~--~-~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNG--T-QIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCC--c-ceeEEEeeEEEEcccCcCCCCCCc
Confidence 1122566677888887764 3443 55677777765 2 56655421 1 12478899999999976 77777
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCC
Q 041537 147 TPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKD 226 (547)
Q Consensus 147 ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~ 226 (547)
+||..... ++. .+.++.+. ...+....++|+|||+|++|+|++.++....+
T Consensus 160 ~~g~~~~~--f~G---------~~iHS~~Y------k~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak------------ 210 (448)
T KOG1399|consen 160 IPGPGIES--FKG---------KIIHSHDY------KSPEKFRDKVVLVVGCGNSGMDISLDLLRVAK------------ 210 (448)
T ss_pred CCCCchhh--cCC---------cceehhhc------cCcccccCceEEEECCCccHHHHHHHHHHhcc------------
Confidence 77742000 110 11111110 01123566899999999999999999887642
Q ss_pred CceEEEEec----CCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 227 LVRITLIQS----GDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 227 ~~~V~lv~~----~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
.|++... .....+. .-.++-.+.. |+.+.+++..+.+ ++.. ..+|.+|+|||+.
T Consensus 211 --~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~--i~~~~e~~~~~~~--~~~~--~~~D~ii~ctgy~ 268 (448)
T KOG1399|consen 211 --EVHLSVVSPKVHVEPPEI-------------LGENLWQVPS--IKSFTEDGSVFEK--GGPV--ERVDRIIFCTGYK 268 (448)
T ss_pred --Ccceeeecccccccccce-------------eecceEEccc--cccccCcceEEEc--Ccee--EEeeeEEEeeeeE
Confidence 4444432 1110000 0112222222 7777788877665 2543 8899999999974
No 89
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.59 E-value=5.2e-15 Score=144.51 Aligned_cols=308 Identities=19% Similarity=0.222 Sum_probs=178.7
Q ss_pred CCCCCCeEEEECCchHHHHHHHhcCC--CCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEE
Q 041537 24 KEREKKRVVLLGTGWAGISFLKDLDV--SSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWE 101 (547)
Q Consensus 24 ~~~~~~~VvIIGgG~aGl~aA~~L~~--~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 101 (547)
..+..++|.|||+||||+++|..|.+ .+++|+++|+.+. +|.-.-+.+++...+...+...+...+++.. +.|+-
T Consensus 16 ~qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFGLvRyGVAPDHpEvKnvintFt~~aE~~r--fsf~g 92 (468)
T KOG1800|consen 16 TQSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFGLVRYGVAPDHPEVKNVINTFTKTAEHER--FSFFG 92 (468)
T ss_pred hccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccceeeeccCCCCcchhhHHHHHHHHhhccc--eEEEe
Confidence 34556799999999999999998874 6799999999986 3434566777777777777788888887765 66543
Q ss_pred EEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC-ccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCC
Q 041537 102 AEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ-VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLP 180 (547)
Q Consensus 102 ~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~-~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 180 (547)
. | .| ++.+.+.. .+-.||.+|||.|+. ++..+|||-+ +..+..+.++.......-+...+
T Consensus 93 N-v-~v---G~dvsl~e--------L~~~ydavvLaYGa~~dR~L~IPGe~-----l~~V~Sarefv~Wyng~P~~~~l- 153 (468)
T KOG1800|consen 93 N-V-KV---GRDVSLKE--------LTDNYDAVVLAYGADGDRRLDIPGEE-----LSGVISAREFVGWYNGLPENQNL- 153 (468)
T ss_pred c-c-ee---cccccHHH--------HhhcccEEEEEecCCCCcccCCCCcc-----cccceehhhhhhhccCCCccccc-
Confidence 2 1 11 22344432 256799999999996 6788999964 22222333333332211111111
Q ss_pred CCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhh-hhhCCC-----C--CCCceEEEEecCCccC------------
Q 041537 181 GLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDL-INLYPT-----V--KDLVRITLIQSGDHIL------------ 240 (547)
Q Consensus 181 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~-~~~~~~-----~--~~~~~V~lv~~~~~il------------ 240 (547)
+..-...+|+|||-|++++++|..|...-...+ ....|. + .+-.+|+|+.|..-.-
T Consensus 154 ----e~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~ 229 (468)
T KOG1800|consen 154 ----EPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVL 229 (468)
T ss_pred ----CcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHh
Confidence 112236699999999999999999865432222 111221 1 1335677777664211
Q ss_pred --C-------c------------c-----cHHHHHHHHHHHHhC---------CcE---EEcCceEEEEeCC-----eEE
Q 041537 241 --N-------S------------F-----DERISSFAEKKFQRD---------GIE---VLTECRVVNVSDK-----EIT 277 (547)
Q Consensus 241 --~-------~------------~-----~~~~~~~~~~~l~~~---------GV~---v~~~~~V~~v~~~-----~v~ 277 (547)
| . . -+++.+.+.+.+.++ +.+ +.+.-...+|.++ ++.
T Consensus 230 ~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~ 309 (468)
T KOG1800|consen 230 ELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVR 309 (468)
T ss_pred CCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccceE
Confidence 1 0 0 012222222222220 000 0000001111111 111
Q ss_pred EE--------eccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCCCCccEEeCCCCCcC---CCCCEEEeCccCccCc
Q 041537 278 MK--------IKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQGKRRVLATNEWLRVK---ECENVYALGDCATIDQ 346 (547)
Q Consensus 278 ~~--------~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~---~~~~VfaiGD~a~~~~ 346 (547)
+. ....|...+++|++++.++|++..|... .++.+.+..+.-+...++. -.|++|+.|-|...|.
T Consensus 310 ~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~----gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~ 385 (468)
T KOG1800|consen 310 FQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDS----GIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPT 385 (468)
T ss_pred EEeeeehhhcccccCceEeeccceeEeeeeecccccCC----CCCcccccCcccCCCceEEeeccCCceEEEeeeccCCc
Confidence 11 1124666679999999999998887553 3344433333333333331 3599999999999998
Q ss_pred ccchhhhhHhhhhcc
Q 041537 347 RKVMEDISTIFAAAD 361 (547)
Q Consensus 347 ~~~~~~~~~~~~~~~ 361 (547)
..+++.+.+.+..++
T Consensus 386 GvIattm~dAf~v~d 400 (468)
T KOG1800|consen 386 GVIATTMQDAFEVAD 400 (468)
T ss_pred ceeeehhhhHHHHHH
Confidence 887777776665554
No 90
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.57 E-value=3.9e-14 Score=149.34 Aligned_cols=174 Identities=17% Similarity=0.233 Sum_probs=114.1
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCe-EEEEcCCCCCccCCCh--------------hhhh---c---cccCcc-ccc
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYD-VQVVSPQNYFAFTPLL--------------PSVT---C---GTVEAR-SIA 83 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~-Vtlid~~~~~~~~p~l--------------~~~~---~---g~~~~~-~~~ 83 (547)
++.++|+|||||++||++|++|.+.|.+ ++|+|+++..+.+... ..++ . ...... .+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 4578999999999999999999999998 9999999754432111 0011 1 111111 134
Q ss_pred hhHHHHHHhCCC--cEEEEEEEEEEEECCCC----EEEEecCCCCCCceeeeecCEEEEccCC--CccCCCCCCcccccc
Q 041537 84 EPVRNIIKKRNA--EIQFWEAEAIKIDAAKN----EVFCKSNIDKETRDFSLEYDYLIIAVGA--QVNTFGTPGVLENCH 155 (547)
Q Consensus 84 ~~~~~~~~~~~~--~v~~~~~~v~~id~~~~----~v~~~~~~~~g~~~~~i~yD~LViAtG~--~~~~~~ipG~~e~~~ 155 (547)
..+...+++++. .++| ...|+.++.+.+ +|++++ +... ++.+|+||+|||- .|+.|.++|.++..-
T Consensus 86 ~y~~~~~~~y~~~~~i~~-~~~v~~~~~~~~~~~w~V~~~~----~~~~-~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g 159 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRF-NTRVEVADWDEDTKRWTVTTSD----GGTG-ELTADFVVVATGHLSEPYIPDFAGLDEFKG 159 (443)
T ss_pred HHHHHHHHHcCceeEEEc-ccceEEEEecCCCCeEEEEEcC----CCee-eEecCEEEEeecCCCCCCCCCCCCccCCCc
Confidence 556667777764 2332 233444544433 455544 3211 2779999999995 678888999764211
Q ss_pred -ccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEe
Q 041537 156 -FLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQ 234 (547)
Q Consensus 156 -~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~ 234 (547)
.+++. ..++.+.-++|+|+|||+|.||+++|.+|.+. +.+|+++.
T Consensus 160 ~~~HS~--------------------~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~--------------ga~vt~~q 205 (443)
T COG2072 160 RILHSA--------------------DWPNPEDLRGKRVLVIGAGASAVDIAPELAEV--------------GASVTLSQ 205 (443)
T ss_pred eEEchh--------------------cCCCccccCCCeEEEECCCccHHHHHHHHHhc--------------CCeeEEEe
Confidence 11110 01223346789999999999999999999986 57999999
Q ss_pred cCCcc
Q 041537 235 SGDHI 239 (547)
Q Consensus 235 ~~~~i 239 (547)
|.+..
T Consensus 206 Rs~~~ 210 (443)
T COG2072 206 RSPPH 210 (443)
T ss_pred cCCCc
Confidence 98754
No 91
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.54 E-value=1.6e-12 Score=130.84 Aligned_cols=297 Identities=18% Similarity=0.216 Sum_probs=167.5
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccc-cchh-HHHHHHhCCCcEEE-EEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARS-IAEP-VRNIIKKRNAEIQF-WEA 102 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~-~~~~-~~~~~~~~~~~v~~-~~~ 102 (547)
...++++|||||+|||+||+.|++.|++|+|||++++.+++.....-...+.+... +..| +.+...+-+ +++ ..+
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~--i~l~Tya 199 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPN--IELITYA 199 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCc--eeeeeee
Confidence 34578999999999999999999999999999999998776322222221111111 1112 122222222 222 233
Q ss_pred EEEEEECCCC----------------------------------------------------------------------
Q 041537 103 EAIKIDAAKN---------------------------------------------------------------------- 112 (547)
Q Consensus 103 ~v~~id~~~~---------------------------------------------------------------------- 112 (547)
+|+.|+-.-.
T Consensus 200 eV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C 279 (622)
T COG1148 200 EVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLC 279 (622)
T ss_pred eeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhh
Confidence 3433221100
Q ss_pred -------EEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCcccccc-ccCCHHHHHHHHHHHHHHHHHccCCC---
Q 041537 113 -------EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLENCH-FLKELEDAQKIRRTVTDCFEKAVLPG--- 181 (547)
Q Consensus 113 -------~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e~~~-~~~~~~~a~~l~~~l~~~~~~~~~~~--- 181 (547)
.|.++ ...++.++....+|+|||-.+....-. .|+.+ .+.++-...++-+.+..+ -|+
T Consensus 280 ~~ac~~~av~~~----q~~e~ve~~vGaIIvAtGy~~~Da~~k--~EyGYG~~~nVIT~lElErml~~~-----GPT~Gk 348 (622)
T COG1148 280 EKACPNEAVDLN----QEPEEVELEVGAIIVATGYKPFDATRK--EEYGYGKYPNVITNLELERMLNPN-----GPTGGK 348 (622)
T ss_pred hhcCCccccccC----CCCcEEEEEeceEEEEccccccCcchh--hhcCCCCCcchhhHHHHHHHhccC-----CCCCce
Confidence 01110 122345788899999999876443211 23322 233444444433333211 010
Q ss_pred -CCHHHHhccccEEEE---cCCh-----hHHHHHHHHHHH-HHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHH
Q 041537 182 -LSEEERKRNLHFVIV---GGGP-----TGVEFAAELHDY-IQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFA 251 (547)
Q Consensus 182 -~~~~~~~~~~~vvVV---GgG~-----~gvE~A~~l~~~-~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~ 251 (547)
+-+...+..++|+.| |.-. .=+--.+.+..+ -...++..|| ..+|+++...-+- ++...-++.
T Consensus 349 vlrpSdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~P----d~~v~I~YmDiRa---fG~~yEefY 421 (622)
T COG1148 349 VLRPSDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYP----DTDVTIYYMDIRA---FGKDYEEFY 421 (622)
T ss_pred EEecCCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCC----CcceeEEEEEeec---cCccHHHHH
Confidence 112223455677765 5322 222222222211 1233445565 4677777655443 333444555
Q ss_pred HHHHHhCCcEEEcCceEEEE---eCCe--EEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC--CCCccEEeC
Q 041537 252 EKKFQRDGIEVLTECRVVNV---SDKE--ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ--GKRRVLATN 324 (547)
Q Consensus 252 ~~~l~~~GV~v~~~~~V~~v---~~~~--v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd 324 (547)
.+.=++.||+++.+ ++.++ .++. |...++-.|+..++++|+||+++|..+.+-.+.+..-+++ +.+|++...
T Consensus 422 ~~~Q~~~gV~fIRG-rvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~ 500 (622)
T COG1148 422 VRSQEDYGVRFIRG-RVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEA 500 (622)
T ss_pred HhhhhhhchhhhcC-ChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccC
Confidence 55545789999877 34444 3444 4455655677778999999999999888888888777777 678887665
Q ss_pred -CCCCcC--CCCCEEEeCccCc
Q 041537 325 -EWLRVK--ECENVYALGDCAT 343 (547)
Q Consensus 325 -~~l~~~--~~~~VfaiGD~a~ 343 (547)
+.|+.. ..++||.+|=|..
T Consensus 501 hPkl~pv~s~~~GIflAG~aqg 522 (622)
T COG1148 501 HPKLRPVDSNRDGIFLAGAAQG 522 (622)
T ss_pred CCCcccccccCCcEEEeecccC
Confidence 566532 4679999998764
No 92
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.51 E-value=3.1e-13 Score=140.69 Aligned_cols=140 Identities=15% Similarity=0.094 Sum_probs=97.4
Q ss_pred EEEcCChhHHHHH-HHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe
Q 041537 194 VIVGGGPTGVEFA-AELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS 272 (547)
Q Consensus 194 vVVGgG~~gvE~A-~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~ 272 (547)
.|++.+.+|+|.+ ..+.++... -+++|+++...+..+|.+ ++.+.+.+.+++.|++++++++|.+++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 6788999999999 555443211 178999999999988875 788999999999999999999999986
Q ss_pred --CCeEEEEeccCCeEEEEeeceEEEccCCCCCcch-----------------------HH----HHHHhCCCCCccEEe
Q 041537 273 --DKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAI-----------------------KD----FMEQIGQGKRRVLAT 323 (547)
Q Consensus 273 --~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~-----------------------~~----l~~~~~~~~~g~i~V 323 (547)
++++......+|+...+++|.||+|+|.....-+ .+ +...-++ .+-++.|
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~-~~~GV~~ 365 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPF-LQFGVAT 365 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCch-hhcCceE
Confidence 3445443233455556999999999995322211 00 0000000 1113677
Q ss_pred CCCCCc------CCCCCEEEeCccCccCc
Q 041537 324 NEWLRV------KECENVYALGDCATIDQ 346 (547)
Q Consensus 324 d~~l~~------~~~~~VfaiGD~a~~~~ 346 (547)
|++||. +..+|+||+|++.....
T Consensus 366 d~~~~p~~~~g~~~~~nl~a~G~vl~g~d 394 (422)
T PRK05329 366 DATLRPLDSQGGPVIENLYAAGAVLGGYD 394 (422)
T ss_pred CCCcCcccCCCCeeccceEEeeehhcCCc
Confidence 777765 24799999999988653
No 93
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=1.9e-12 Score=128.63 Aligned_cols=282 Identities=14% Similarity=0.187 Sum_probs=169.0
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCC-CCeEEEEcCCCCCccCCC--hhhh------hccc---cCccc------------
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVS-SYDVQVVSPQNYFAFTPL--LPSV------TCGT---VEARS------------ 81 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~-g~~Vtlid~~~~~~~~p~--l~~~------~~g~---~~~~~------------ 81 (547)
+...|++.||-||+-|+.|..|... +.+...+|+.+.|.|+|. ++.. .... .+|.+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 4568999999999999999999854 478999999999988762 2220 1111 11111
Q ss_pred -----------------cchhHHHHHHhCCCcEEEEEEEEE---EEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC
Q 041537 82 -----------------IAEPVRNIIKKRNAEIQFWEAEAI---KIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141 (547)
Q Consensus 82 -----------------~~~~~~~~~~~~~~~v~~~~~~v~---~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~ 141 (547)
....++...... ..++| ..+|+ .+|-+.......... ++. .+.+..|||++|.+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rf-g~~V~~i~~~~~d~~~~~~~~t~-~~~---~y~ar~lVlg~G~~ 156 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRF-GEEVTDISSLDGDAVVRLFVVTA-NGT---VYRARNLVLGVGTQ 156 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhC-Ccccc-CCeeccccccCCcceeEEEEEcC-CCc---EEEeeeEEEccCCC
Confidence 011111111222 23443 55677 444444332111110 132 89999999999999
Q ss_pred ccCCC-CCCcc-ccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhh
Q 041537 142 VNTFG-TPGVL-ENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLIN 219 (547)
Q Consensus 142 ~~~~~-ipG~~-e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~ 219 (547)
|..|+ +..+. +.++ ++ -++.++.. +.....+|.|||+|-+|-|+-..|..-.
T Consensus 157 P~IP~~f~~l~~~~vf--Hs----s~~~~~~~--------------~~~~~~~V~ViG~GQSAAEi~~~Ll~~~------ 210 (436)
T COG3486 157 PYIPPCFRSLIGERVF--HS----SEYLERHP--------------ELLQKRSVTVIGSGQSAAEIFLDLLNSQ------ 210 (436)
T ss_pred cCCChHHhCcCcccee--eh----HHHHHhhH--------------HhhcCceEEEEcCCccHHHHHHHHHhCC------
Confidence 98773 22222 2222 11 11111111 1122235999999999999887776532
Q ss_pred hCCCCCCCceEEEEecCCccCCc---------ccHHHHHHH------------------------------HHHH-----
Q 041537 220 LYPTVKDLVRITLIQSGDHILNS---------FDERISSFA------------------------------EKKF----- 255 (547)
Q Consensus 220 ~~~~~~~~~~V~lv~~~~~il~~---------~~~~~~~~~------------------------------~~~l----- 255 (547)
+. ...++.++.|+...+|. |.|+..+++ .+.|
T Consensus 211 --~~--~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l 286 (436)
T COG3486 211 --PP--QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSL 286 (436)
T ss_pred --CC--cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHh
Confidence 11 23478899999887764 222222211 1111
Q ss_pred --HhCCcEEEcCceEEEEeCCe---EEE--EeccCCeEEEEeeceEEEccCCC-CCc-chHHHHHHhCCCCCccEEeCCC
Q 041537 256 --QRDGIEVLTECRVVNVSDKE---ITM--KIKSTGAVCSIPHGLVLWSTGVG-TRP-AIKDFMEQIGQGKRRVLATNEW 326 (547)
Q Consensus 256 --~~~GV~v~~~~~V~~v~~~~---v~~--~~~~~G~~~~i~~D~vv~a~G~~-~~p-~~~~l~~~~~~~~~g~i~Vd~~ 326 (547)
.+..|.++.++.|..+++.+ +.+ ....+|+..++++|.||+|||+. ..| .++.+...+-.+++|.+.|+.+
T Consensus 287 ~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~d 366 (436)
T COG3486 287 GGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRD 366 (436)
T ss_pred cCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCc
Confidence 13568899999999997643 443 33345666679999999999996 344 4444444444588899999998
Q ss_pred CCcCCCC----CEEEeCccCc
Q 041537 327 LRVKECE----NVYALGDCAT 343 (547)
Q Consensus 327 l~~~~~~----~VfaiGD~a~ 343 (547)
+++...+ .||+.|=+..
T Consensus 367 Y~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 367 YRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred eeeecCCCCcceEEEeccccc
Confidence 7764322 6999887765
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.30 E-value=2.4e-11 Score=96.73 Aligned_cols=68 Identities=31% Similarity=0.575 Sum_probs=64.7
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNV 271 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v 271 (547)
+++|||||++|+|+|..|.++ +.+|+++++.+.+++.+++.+.+.+.+.|++.||++++++.++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--------------g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--------------GKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------TSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHh--------------CcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 589999999999999999886 689999999999999999999999999999999999999999999
Q ss_pred eC
Q 041537 272 SD 273 (547)
Q Consensus 272 ~~ 273 (547)
+.
T Consensus 67 ~~ 68 (80)
T PF00070_consen 67 EK 68 (80)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 95
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=1.5e-07 Score=96.71 Aligned_cols=175 Identities=15% Similarity=0.202 Sum_probs=97.2
Q ss_pred CCeEEEECCchHHHHHHHhcCC---CCCeEEEEcCCCCCcc----CCChh-----------------------hhhccc-
Q 041537 28 KKRVVLLGTGWAGISFLKDLDV---SSYDVQVVSPQNYFAF----TPLLP-----------------------SVTCGT- 76 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~---~g~~Vtlid~~~~~~~----~p~l~-----------------------~~~~g~- 76 (547)
+++|+|||+|++|+.+|.+|.+ ....|+|+|+.+.++- .+..+ .+..+.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 4789999999999999999972 2223999999876522 11110 011111
Q ss_pred ---cCccc-----------------cchhHHHHHHhCCC-cEEEEEEEEEEEECC--CCEEEEecCCCCCCceeeeecCE
Q 041537 77 ---VEARS-----------------IAEPVRNIIKKRNA-EIQFWEAEAIKIDAA--KNEVFCKSNIDKETRDFSLEYDY 133 (547)
Q Consensus 77 ---~~~~~-----------------~~~~~~~~~~~~~~-~v~~~~~~v~~id~~--~~~v~~~~~~~~g~~~~~i~yD~ 133 (547)
.++++ +.+.+..+++.... .+.+++.+++++.+. .....+... +|. ...+|-
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~--~g~---~~~ad~ 155 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTA--DGP---SEIADI 155 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecC--CCC---eeeeeE
Confidence 00000 00112222232222 378889998888776 222222221 144 788999
Q ss_pred EEEccCCCccCCCC--CCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHH
Q 041537 134 LIIAVGAQVNTFGT--PGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHD 211 (547)
Q Consensus 134 LViAtG~~~~~~~i--pG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~ 211 (547)
+|+|||..+..+.. ....+..-.+.+...+.. + ...+..-+|+|+|.|.+-++....|.+
T Consensus 156 ~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~----l--------------d~v~~~drVli~GsgLt~~D~v~~l~~ 217 (474)
T COG4529 156 IVLATGHSAPPADPAARDLKGSPRLIADPYPANA----L--------------DGVDADDRVLIVGSGLTSIDQVLVLRR 217 (474)
T ss_pred EEEeccCCCCCcchhhhccCCCcceeccccCCcc----c--------------ccccCCCceEEecCCchhHHHHHHHhc
Confidence 99999976544322 000111011111111100 0 011223379999999999999999987
Q ss_pred HHHHhhhhhCCCCCCCceEEEEecCC
Q 041537 212 YIQEDLINLYPTVKDLVRITLIQSGD 237 (547)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~V~lv~~~~ 237 (547)
... ...||++.|..
T Consensus 218 ~gh------------~g~It~iSRrG 231 (474)
T COG4529 218 RGH------------KGPITAISRRG 231 (474)
T ss_pred cCC------------ccceEEEeccc
Confidence 542 46888888765
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.96 E-value=4e-09 Score=105.57 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=74.5
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc---------------------------------------C
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF---------------------------------------T 66 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~---------------------------------------~ 66 (547)
+++.+|+|||||+|||.||..+++.|++|+|||+.+.++- +
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 3568999999999999999999999999999999665411 1
Q ss_pred C------------ChhhhhccccCcc-----ccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeee
Q 041537 67 P------------LLPSVTCGTVEAR-----SIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSL 129 (547)
Q Consensus 67 p------------~l~~~~~g~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i 129 (547)
| -++.-..|.+-|. .+..-+..-+++.++.++ .+.+|.+|+.++....+.... |+ ++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~-~~~~v~~v~~~~~~f~l~t~~--g~---~i 154 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIR-TRSRVSSVEKDDSGFRLDTSS--GE---TV 154 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEE-ecceEEeEEecCceEEEEcCC--CC---EE
Confidence 0 0000112222222 233334455667786664 577899999887555554422 43 79
Q ss_pred ecCEEEEccCCC
Q 041537 130 EYDYLIIAVGAQ 141 (547)
Q Consensus 130 ~yD~LViAtG~~ 141 (547)
.+|.||||||..
T Consensus 155 ~~d~lilAtGG~ 166 (408)
T COG2081 155 KCDSLILATGGK 166 (408)
T ss_pred EccEEEEecCCc
Confidence 999999999943
No 97
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.83 E-value=3.3e-07 Score=94.73 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-ccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEE
Q 041537 203 VEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS-FDERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMK 279 (547)
Q Consensus 203 vE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~ 279 (547)
.++-..|.+.+ ++.|..+--.| |. .+.++.+.+.+.++++|++++.+++|.++. ++.++..
T Consensus 236 ~~~~~~L~~~~-------------g~~v~E~ptlP---PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V 299 (419)
T TIGR03378 236 LELLRELEQAT-------------GLTLCELPTMP---PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRI 299 (419)
T ss_pred HHHHHHHHHHH-------------CCCEEeCCCCC---CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEE
Confidence 45556666654 45666553222 33 356889999999999999999999999874 4545543
Q ss_pred eccCCeEEEEeeceEEEccCCC-CCcchHHHH---H---HhCC---C----------------CCccEEeCCCCCc----
Q 041537 280 IKSTGAVCSIPHGLVLWSTGVG-TRPAIKDFM---E---QIGQ---G----------------KRRVLATNEWLRV---- 329 (547)
Q Consensus 280 ~~~~G~~~~i~~D~vv~a~G~~-~~p~~~~l~---~---~~~~---~----------------~~g~i~Vd~~l~~---- 329 (547)
.+.++....+.+|.+|+|+|.. ...+.+.+. + .+++ . -+-++.+|++||.
T Consensus 300 ~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g 379 (419)
T TIGR03378 300 HTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGG 379 (419)
T ss_pred EecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCC
Confidence 3233422349999999999975 343332210 0 0111 0 1124789999984
Q ss_pred CCCCCEEEeCccCccC
Q 041537 330 KECENVYALGDCATID 345 (547)
Q Consensus 330 ~~~~~VfaiGD~a~~~ 345 (547)
+-++|+||+|-+....
T Consensus 380 ~~~~Nl~a~G~vL~G~ 395 (419)
T TIGR03378 380 QTIENLYAIGAVLGGY 395 (419)
T ss_pred cccccceEechhhcCC
Confidence 1378999999998754
No 98
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.80 E-value=3.6e-07 Score=93.79 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=56.4
Q ss_pred hhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEE-EEeccCCeEEEEeeceE
Q 041537 218 INLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS--DKEIT-MKIKSTGAVCSIPHGLV 294 (547)
Q Consensus 218 ~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~-~~~~~~G~~~~i~~D~v 294 (547)
.+.+|.+.+...--+.......+ .+..+.+.+.+.+++.|++++++++|+++. ++.++ +.. .+|+ +.+|.|
T Consensus 122 ~~~~p~~~~~~~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~-~~g~---i~ad~v 195 (358)
T PF01266_consen 122 RELFPFLNPRIEGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRT-SDGE---IRADRV 195 (358)
T ss_dssp HHHSTTSSTTTEEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEE-TTEE---EEECEE
T ss_pred hhhhcccccchhhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccc-cccc---ccccee
Confidence 34455554444555555544322 246888889999999999999999999985 56666 443 4454 999999
Q ss_pred EEccCCCCCcchHHHHHHhC
Q 041537 295 LWSTGVGTRPAIKDFMEQIG 314 (547)
Q Consensus 295 v~a~G~~~~p~~~~l~~~~~ 314 (547)
|.|+|. +...+...++
T Consensus 196 V~a~G~----~s~~l~~~~~ 211 (358)
T PF01266_consen 196 VLAAGA----WSPQLLPLLG 211 (358)
T ss_dssp EE--GG----GHHHHHHTTT
T ss_pred Eecccc----cceeeeeccc
Confidence 999993 4445555554
No 99
>PRK09897 hypothetical protein; Provisional
Probab=98.78 E-value=9.7e-08 Score=102.51 Aligned_cols=183 Identities=13% Similarity=0.169 Sum_probs=100.4
Q ss_pred CCeEEEECCchHHHHHHHhcCC--CCCeEEEEcCCCCCc----cCCC---------------------hhhhhc------
Q 041537 28 KKRVVLLGTGWAGISFLKDLDV--SSYDVQVVSPQNYFA----FTPL---------------------LPSVTC------ 74 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~--~g~~Vtlid~~~~~~----~~p~---------------------l~~~~~------ 74 (547)
|++|+|||||++|+++|.+|.+ ...+|+|||++...+ |.+. +..+..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 5689999999999999999974 346899999976543 2110 001110
Q ss_pred -------------cccCccccc-hhHHH----HH---HhCCCcEEEE-EEEEEEEECCCCEEEEecCCCCCCceeeeecC
Q 041537 75 -------------GTVEARSIA-EPVRN----II---KKRNAEIQFW-EAEAIKIDAAKNEVFCKSNIDKETRDFSLEYD 132 (547)
Q Consensus 75 -------------g~~~~~~~~-~~~~~----~~---~~~~~~v~~~-~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD 132 (547)
+...++.+. .+++. ++ ...+..++++ ..+|++|+.....+.+.... +. ..+.+|
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~--gg--~~i~aD 156 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ--DL--PSETFD 156 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC--CC--eEEEcC
Confidence 111112111 11222 22 2233234444 55899998877766554311 21 278999
Q ss_pred EEEEccCCCccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHH
Q 041537 133 YLIIAVGAQVNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDY 212 (547)
Q Consensus 133 ~LViAtG~~~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~ 212 (547)
+||+|+|..+... .++. ..++.+.-+... . .. ....+|+|+|.|.+.++++..|...
T Consensus 157 ~VVLAtGh~~p~~-~~~~---~~yi~~pw~~~~-----~-----~~---------i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 157 LAVIATGHVWPDE-EEAT---RTYFPSPWSGLM-----E-----AK---------VDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EEEECCCCCCCCC-Chhh---ccccCCCCcchh-----h-----cC---------CCCCeEEEECCCHHHHHHHHHHHhc
Confidence 9999999754211 1111 111111111100 0 00 1124999999999999999999854
Q ss_pred HHHhh--------hhhCCCCCCCceEEEEecCCc
Q 041537 213 IQEDL--------INLYPTVKDLVRITLIQSGDH 238 (547)
Q Consensus 213 ~~~~~--------~~~~~~~~~~~~V~lv~~~~~ 238 (547)
.- .+ .-.|+.-....+|+++.|...
T Consensus 214 gG-~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 214 HG-SFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred CC-ceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 10 11 011222224568888887764
No 100
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.78 E-value=1.4e-07 Score=97.52 Aligned_cols=89 Identities=16% Similarity=0.272 Sum_probs=58.2
Q ss_pred HhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeec
Q 041537 215 EDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHG 292 (547)
Q Consensus 215 ~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D 292 (547)
+.+.+.-|.+.++..=-+......+.. +..+...+.+.++++|++++++++|+.++. +++....+.+|+++ ++|+
T Consensus 125 ~~i~~~eP~l~~~~~aal~~p~~giV~--~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~-~~ak 201 (429)
T COG0579 125 EEIKELEPLLNEGAVAALLVPSGGIVD--PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEET-LEAK 201 (429)
T ss_pred HHHHhhCccccccceeeEEcCCCceEc--HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEE-EEee
Confidence 344455566554322222222222221 235677788888889999999999998854 43666666678765 9999
Q ss_pred eEEEccCCCCCcch
Q 041537 293 LVLWSTGVGTRPAI 306 (547)
Q Consensus 293 ~vv~a~G~~~~p~~ 306 (547)
.||.|+|..+.++.
T Consensus 202 ~Vin~AGl~Ad~la 215 (429)
T COG0579 202 FVINAAGLYADPLA 215 (429)
T ss_pred EEEECCchhHHHHH
Confidence 99999996555433
No 101
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.76 E-value=7.2e-08 Score=100.39 Aligned_cols=80 Identities=16% Similarity=0.306 Sum_probs=47.9
Q ss_pred EecCCccCCcc--cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCe-EEEEeccCCeEEEEeeceEEEccCCCCCcchH
Q 041537 233 IQSGDHILNSF--DERISSFAEKKFQRDGIEVLTECRVVNVS--DKE-ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIK 307 (547)
Q Consensus 233 v~~~~~il~~~--~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~-v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~ 307 (547)
++...++.|.- ...+.+.+.+.+++.||+++++++|.+++ +++ ..+.. .+++. +.||.||+|+|-...|.+.
T Consensus 95 ~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~-~~~~~--~~a~~vILAtGG~S~p~~G 171 (409)
T PF03486_consen 95 IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT-KNGGE--YEADAVILATGGKSYPKTG 171 (409)
T ss_dssp E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE-TTTEE--EEESEEEE----SSSGGGT
T ss_pred EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec-cCccc--ccCCEEEEecCCCCccccC
Confidence 34455555543 45778889999999999999999999994 455 33433 23554 9999999999976666542
Q ss_pred ------HHHHHhCC
Q 041537 308 ------DFMEQIGQ 315 (547)
Q Consensus 308 ------~l~~~~~~ 315 (547)
.+++++|.
T Consensus 172 S~G~gy~~a~~lGh 185 (409)
T PF03486_consen 172 SDGSGYRIAKKLGH 185 (409)
T ss_dssp -SSHHHHHHHHTT-
T ss_pred CCcHHHHHHHHCCC
Confidence 34556553
No 102
>PLN02463 lycopene beta cyclase
Probab=98.74 E-value=6.7e-08 Score=102.04 Aligned_cols=110 Identities=15% Similarity=0.270 Sum_probs=72.0
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCC-------hh-----hhh----c--------------
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPL-------LP-----SVT----C-------------- 74 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~-------l~-----~~~----~-------------- 74 (547)
....+||+|||||+||+++|..|++.|++|+|||+++...+... +. +.. .
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 34467999999999999999999999999999999764333110 00 000 0
Q ss_pred ----cccCccccchhHHHHHHhCCCcEEEEEEEEEEEECCCCE--EEEecCCCCCCceeeeecCEEEEccCCCcc
Q 041537 75 ----GTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNE--VFCKSNIDKETRDFSLEYDYLIIAVGAQVN 143 (547)
Q Consensus 75 ----g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~--v~~~~~~~~g~~~~~i~yD~LViAtG~~~~ 143 (547)
+.++...+...+.+.+...+ ++++.++|+.|+..+.. |++++ |. ++.+|+||.|+|..+.
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~G--V~~~~~~V~~I~~~~~~~~V~~~d----G~---~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANG--VQFHQAKVKKVVHEESKSLVVCDD----GV---KIQASLVLDATGFSRC 170 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcC--CEEEeeEEEEEEEcCCeEEEEECC----CC---EEEcCEEEECcCCCcC
Confidence 00011111122333344555 67778899999876654 44443 44 8999999999998764
No 103
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.68 E-value=5.9e-07 Score=94.67 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=32.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
|+||+|||||+.|+++|++|++.|.+|+|+|+++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36999999999999999999999999999999864
No 104
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.61 E-value=1.4e-07 Score=94.30 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=67.4
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCC----hh---hh-------------------hcc-------
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPL----LP---SV-------------------TCG------- 75 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~----l~---~~-------------------~~g------- 75 (547)
+||+|||||++|+++|..|++.|.+|+|||+.+....... .+ .. ..+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 4899999999999999999999999999999865432100 00 00 000
Q ss_pred ------ccCccccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc
Q 041537 76 ------TVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV 142 (547)
Q Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~ 142 (547)
.++...+...+.+.+.+.++++ +...+++.+..+...+.+.-.. + ...+.+|++|+|+|...
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~-~~~~~v~~~~~~~~~~~~~~~~--~--~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAEL-RLGTTVLDVEIHDDRVVVIVRG--G--EGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEE-EeCcEEeeEEEeCCEEEEEEcC--c--cEEEEeCEEEECCCcch
Confidence 0111112223445555666444 2466788876655544332110 1 13799999999999864
No 105
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.59 E-value=1.1e-07 Score=104.26 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=62.7
Q ss_pred ccEEEEcCCh--hHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcc--------------cHHHHHHHHHH
Q 041537 191 LHFVIVGGGP--TGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF--------------DERISSFAEKK 254 (547)
Q Consensus 191 ~~vvVVGgG~--~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~--------------~~~~~~~~~~~ 254 (547)
.++.|+|+|. ++.|++..+... +.+++++.+.+++++.+ ...+.+.+.+.
T Consensus 158 ~~~~~~G~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~ 223 (574)
T PRK12842 158 KTITFIGMMFNSSNADLKHFFNAT--------------RSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKS 223 (574)
T ss_pred ccccccceecccchHHHHHHHhhc--------------cchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHH
Confidence 3788999988 788888877654 34444444444333322 24567777888
Q ss_pred HHhCCcEEEcCceEEEEe--CCeE---EEEeccCCeEEEEeec-eEEEccCC
Q 041537 255 FQRDGIEVLTECRVVNVS--DKEI---TMKIKSTGAVCSIPHG-LVLWSTGV 300 (547)
Q Consensus 255 l~~~GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D-~vv~a~G~ 300 (547)
+++.||+|++++.|+++. ++.| .+.+ .+...++.++ .||+|+|-
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~--~~~~~~i~a~k~VVlAtGg 273 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTEGGRVVGARVID--AGGERRITARRGVVLACGG 273 (574)
T ss_pred HHhCCCEEEeCCEEEEEEeeCCEEEEEEEEc--CCceEEEEeCCEEEEcCCC
Confidence 899999999999999985 3433 3332 2333357786 79999994
No 106
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.59 E-value=6.9e-08 Score=105.35 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=66.6
Q ss_pred ccEEEEcCChhHHHHHHH-------HHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEE
Q 041537 191 LHFVIVGGGPTGVEFAAE-------LHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVL 263 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~-------l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~ 263 (547)
+.++++|++..++|++.. +.++ +.+|+++...+..+..++..+...+.+.+++.||+++
T Consensus 161 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~ 226 (557)
T PRK07843 161 LNMVVMQQDYVWLNLLKRHPRGVLRALKV--------------GARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVL 226 (557)
T ss_pred ccccccHHHHHHHHhhhcCchhHHHHHHH--------------HHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEE
Confidence 378899999999998864 3333 2455555555555455677888888899999999999
Q ss_pred cCceEEEEeC--CeEEEE-eccCCeEEEEeec-eEEEccCC
Q 041537 264 TECRVVNVSD--KEITMK-IKSTGAVCSIPHG-LVLWSTGV 300 (547)
Q Consensus 264 ~~~~V~~v~~--~~v~~~-~~~~G~~~~i~~D-~vv~a~G~ 300 (547)
+++.++++.. +.|+-. ...+|+...+.++ .||+|+|-
T Consensus 227 ~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 227 LNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGG 267 (557)
T ss_pred eCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence 9999999853 333311 1124655568885 68886663
No 107
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.54 E-value=5.8e-06 Score=88.37 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=36.9
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCC----CCCeEEEEcCCCCCccCC
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDV----SSYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~----~g~~Vtlid~~~~~~~~p 67 (547)
...+++|+|||||+|||+||.+|.+ +|.+|+|+|+++..++..
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 3446899999999999999999986 478999999999877653
No 108
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.54 E-value=3.2e-06 Score=87.54 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhC-CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCCCc
Q 041537 245 ERISSFAEKKFQRD-GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRP 304 (547)
Q Consensus 245 ~~~~~~~~~~l~~~-GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p 304 (547)
..+...+.+.+.+. |++++.+++|++++.+.+.+. +|+ +.+|.||+|+|.....
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~---~g~---i~a~~VV~A~G~~s~~ 199 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTS---RGD---VHADQVFVCPGADFET 199 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeC---CCc---EEeCEEEECCCCChhh
Confidence 45666777777765 999999999999987644332 364 7899999999964443
No 109
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.50 E-value=5.4e-07 Score=94.19 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=66.9
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC-------Ch-----hhhh----cc------------------
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP-------LL-----PSVT----CG------------------ 75 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p-------~l-----~~~~----~g------------------ 75 (547)
||+|||||+||+++|..|++.|++|+|||+++...+.. .+ .... .+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 69999999999999999999999999999886543311 00 0000 00
Q ss_pred ccCccccchhHHHHHHhCCCcEEEEEEEEEEEECC-CCE--EEEecCCCCCCceeeeecCEEEEccCCCc
Q 041537 76 TVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAA-KNE--VFCKSNIDKETRDFSLEYDYLIIAVGAQV 142 (547)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~-~~~--v~~~~~~~~g~~~~~i~yD~LViAtG~~~ 142 (547)
.++...+...+.+.+...+ ++++.++++.+..+ ... |++.+ |. ++.+|+||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~g--v~~~~~~v~~i~~~~~~~~~v~~~~----g~---~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGG--VLWLERKAIHAEADGVALSTVYCAG----GQ---RIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcC--cEEEccEEEEEEecCCceeEEEeCC----CC---EEEeCEEEECCCCch
Confidence 0000111122333344455 56778889888766 333 33333 43 899999999999876
No 110
>PRK06847 hypothetical protein; Provisional
Probab=98.49 E-value=6.8e-07 Score=92.95 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=33.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
++++|+|||||++||++|..|++.|++|+|+|+++.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 367999999999999999999999999999998764
No 111
>PLN02697 lycopene epsilon cyclase
Probab=98.49 E-value=8.2e-07 Score=95.41 Aligned_cols=107 Identities=15% Similarity=0.263 Sum_probs=67.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC-----ccCCCh-----hhhhc------------c---------
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF-----AFTPLL-----PSVTC------------G--------- 75 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~-----~~~p~l-----~~~~~------------g--------- 75 (547)
.++||+|||||+||+++|..|++.|++|+|||+...+ .|...+ ..... +
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 4579999999999999999999999999999985222 110000 00000 0
Q ss_pred -ccCccccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEE---EEecCCCCCCceeeeecCEEEEccCCCc
Q 041537 76 -TVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEV---FCKSNIDKETRDFSLEYDYLIIAVGAQV 142 (547)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v---~~~~~~~~g~~~~~i~yD~LViAtG~~~ 142 (547)
.++...+...+.+.+...+ ++++.++|+.+..+...+ .+.+ |. ++.+|.||+|+|..+
T Consensus 187 g~V~R~~L~~~Ll~~a~~~G--V~~~~~~V~~I~~~~~~~~vv~~~d----G~---~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESG--VSYLSSKVDRITEASDGLRLVACED----GR---VIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcC--CEEEeeEEEEEEEcCCcEEEEEEcC----Cc---EEECCEEEECCCcCh
Confidence 0111111122333344455 667888999997654432 2332 43 899999999999876
No 112
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.49 E-value=3.4e-07 Score=98.29 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=37.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p 67 (547)
+++||||||||++||+||..|++.|++|+|+||+...++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence 56899999999999999999999999999999988776643
No 113
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.48 E-value=1.3e-06 Score=89.59 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEe--CCe--EEEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVS--DKE--ITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~--v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+++.|++++.++++..++ .++ +.+....+|+..++.+|+||-|-|.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~ 170 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGA 170 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCc
Confidence 566777788888899999999999774 344 3444544566667999999999994
No 114
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.48 E-value=4.9e-07 Score=94.74 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=71.0
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhh---------hhcccc--------------------
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPS---------VTCGTV-------------------- 77 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~---------~~~g~~-------------------- 77 (547)
+++||+||||||||++||+.|++.|++|+|+|+++..+.++.... +.....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 578999999999999999999999999999999887765432211 000000
Q ss_pred -----------CccccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCc
Q 041537 78 -----------EARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQV 142 (547)
Q Consensus 78 -----------~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~ 142 (547)
+...+...+.....+.|..+. ...++..+..++..+...... +. .++.++++|.|.|+..
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~-~~~~~~~~~~~~~~~~~~~~~--~~--~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELY-PGTRVTGVIREDDGVVVGVRA--GD--DEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEE-eceEEEEEEEeCCcEEEEEEc--CC--EEEEcCEEEECCCcch
Confidence 000111224445556674442 356777776655433322111 21 4899999999999865
No 115
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.48 E-value=4.1e-06 Score=88.36 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
..+...+.+.+++.|+++++++.|++++. +.+....+.++ + +.+|.||.|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~--~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-V--ITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-E--EeCCEEEECCCcch
Confidence 46677777888999999999999999854 44432222334 3 89999999999543
No 116
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.46 E-value=1.3e-06 Score=93.31 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHh----CC--cEEEcCceEEEEeC--Ce-EEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC
Q 041537 245 ERISSFAEKKFQR----DG--IEVLTECRVVNVSD--KE-ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ 315 (547)
Q Consensus 245 ~~~~~~~~~~l~~----~G--V~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~ 315 (547)
..+...+.+.+++ .| ++++++++|+.++. +. +.+.. .+|+ +.+|.||+|+|. +...+++.+|+
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T-~~G~---i~A~~VVvaAG~----~S~~La~~~Gi 282 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHT-NRGE---IRARFVVVSACG----YSLLFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEE-CCCE---EEeCEEEECcCh----hHHHHHHHhCC
Confidence 3677778888888 77 88999999999964 33 33332 3453 999999999994 33345555554
No 117
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.45 E-value=4.4e-06 Score=88.38 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=35.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
.++||+|||||+||++||..|++.|++|+|||+.++...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 358999999999999999999999999999999876543
No 118
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.45 E-value=3.8e-07 Score=93.18 Aligned_cols=106 Identities=15% Similarity=0.225 Sum_probs=64.9
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEc-CCCCCccCCChhh---h---------------------------------
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVS-PQNYFAFTPLLPS---V--------------------------------- 72 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid-~~~~~~~~p~l~~---~--------------------------------- 72 (547)
||+|||||+||..||+.+++.|++|.|+. +.+.+...+..+. .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999999999999993 3333322211111 0
Q ss_pred --hcc-----ccCccccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCC
Q 041537 73 --TCG-----TVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGA 140 (547)
Q Consensus 73 --~~g-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~ 140 (547)
+.+ ..+...+...+++.+.... ++++++++|++|..++..|.---.. +|. .+.+|.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~-nl~i~~~~V~~l~~e~~~v~GV~~~-~g~---~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHP-NLTIIQGEVTDLIVENGKVKGVVTK-DGE---EIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTST-TEEEEES-EEEEEECTTEEEEEEET-TSE---EEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCC-CeEEEEcccceEEecCCeEEEEEeC-CCC---EEecCEEEEeccc
Confidence 000 0111223334556666644 5888999999999877754322111 144 8999999999998
No 119
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.42 E-value=2.2e-06 Score=85.97 Aligned_cols=93 Identities=18% Similarity=0.315 Sum_probs=72.2
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCc---c--------CCcc-----cHHHHHHHHHHH
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH---I--------LNSF-----DERISSFAEKKF 255 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~---i--------l~~~-----~~~~~~~~~~~l 255 (547)
+|+|||||+.|+++|..|.+. +.+|+++++.+. + .|.+ +.++.+.+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~--------------g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA--------------NLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC--------------CCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 699999999999999999875 689999997651 1 1333 357888889999
Q ss_pred HhCCcEEEcCceEEEEeCCe--EEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 256 QRDGIEVLTECRVVNVSDKE--ITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 256 ~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
++.|+++++ ++|.+++.+. +.+.. .+|+. +.+|.+|+|+|..+
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~-~~~~~--~~~d~liiAtG~~~ 112 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKT-GDGKE--YTAKAVIIATGASA 112 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEe-CCCCE--EEeCEEEECCCCCc
Confidence 999999999 8899987643 33333 23554 99999999999754
No 120
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.41 E-value=1.4e-06 Score=91.20 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=30.8
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ 60 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~ 60 (547)
+||+||||||||+++|+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999997
No 121
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.41 E-value=9.5e-06 Score=84.47 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=50.8
Q ss_pred hhhhCCCCC-CCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeece
Q 041537 217 LINLYPTVK-DLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGL 293 (547)
Q Consensus 217 ~~~~~~~~~-~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~ 293 (547)
+.+.+|.+. +....-++.+....+ -+..+.+.+.+.+++.|++++.+++|++++. +.+.+.. .++ . +.+|.
T Consensus 118 ~~~~~P~l~~~~~~~~~~~~~~g~i--~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~-~~~-~--i~a~~ 191 (380)
T TIGR01377 118 LKQRFPNIRVPRNEVGLLDPNGGVL--YAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKT-TKG-S--YQANK 191 (380)
T ss_pred HHHhCCCCcCCCCceEEEcCCCcEE--cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEe-CCC-E--EEeCE
Confidence 444556554 222223444444322 2346677777888899999999999999864 3454443 334 3 89999
Q ss_pred EEEccCCC
Q 041537 294 VLWSTGVG 301 (547)
Q Consensus 294 vv~a~G~~ 301 (547)
||+|+|..
T Consensus 192 vV~aaG~~ 199 (380)
T TIGR01377 192 LVVTAGAW 199 (380)
T ss_pred EEEecCcc
Confidence 99999953
No 122
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.40 E-value=1.7e-06 Score=91.74 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.2
Q ss_pred CCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 24 KEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 24 ~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
...+++||+||||||||+++|..|++.|++|+|+|++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34456899999999999999999999999999999874
No 123
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.40 E-value=9.4e-07 Score=86.58 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=68.1
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC-----Chhhh--------------------hcc--ccCc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP-----LLPSV--------------------TCG--TVEA 79 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p-----~l~~~--------------------~~g--~~~~ 79 (547)
...||+|||||+||++||.+|++.|++|+|+|+++..+... +.+.. ..+ ..++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccH
Confidence 45799999999999999999999999999999987654211 00000 000 0112
Q ss_pred cccchhHHHHHHhCCCcEEEEEEEEEEEECCCC-EE---EEecC--CCCC--CceeeeecCEEEEccCCCc
Q 041537 80 RSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKN-EV---FCKSN--IDKE--TRDFSLEYDYLIIAVGAQV 142 (547)
Q Consensus 80 ~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~-~v---~~~~~--~~~g--~~~~~i~yD~LViAtG~~~ 142 (547)
.++...+...+...++.+ +...+|+++..++. .+ .+... ...+ .+...+.++.+|+|||...
T Consensus 104 ~~l~~~L~~~A~~~Gv~I-~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKI-FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEE-EcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 223333555556667444 23457777754332 22 22110 0001 1134899999999999754
No 124
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.40 E-value=8.5e-07 Score=92.89 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
+..+.+.+.+.+++.|+++++++.|.+++. +.+.+.. .+| . +.+|.||.|+|...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~-~~g-~--i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRT-TQG-E--YEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEE-CCC-E--EEeCEEEECCCcch
Confidence 357888888899999999999999999853 3454443 334 3 99999999999643
No 125
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.39 E-value=2e-05 Score=84.41 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC--C-eEEEE--eccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVSD--K-EITMK--IKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ 315 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~-~v~~~--~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~ 315 (547)
..+...+.+.++++|++++++++|++++. + .+.+. +..+|+..++.+|.||.|+|.... .+.+.+|+
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~----~La~~~Gi 249 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL----PLLQKSGI 249 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH----HHHHHcCC
Confidence 57788888888999999999999999864 2 23332 223343334899999999995333 45555554
No 126
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.39 E-value=1.1e-05 Score=83.77 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=51.6
Q ss_pred hhhhCCCCC-CCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeece
Q 041537 217 LINLYPTVK-DLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGL 293 (547)
Q Consensus 217 ~~~~~~~~~-~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~ 293 (547)
+.+.+|.+. +....-++...+..+. +..+...+.+.+.+.|++++.+++|++++. +.+.+.. .+|+ +.+|.
T Consensus 122 ~~~~~P~l~~~~~~~a~~~~~~g~v~--p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~---~~a~~ 195 (376)
T PRK11259 122 IRRRFPQFRLPDGYIALFEPDGGFLR--PELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTT-ADGT---YEAKK 195 (376)
T ss_pred HHHhCCCCcCCCCceEEEcCCCCEEc--HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEe-CCCE---EEeeE
Confidence 444556554 2233344544443222 346666677778889999999999999854 4455443 3353 89999
Q ss_pred EEEccCCCC
Q 041537 294 VLWSTGVGT 302 (547)
Q Consensus 294 vv~a~G~~~ 302 (547)
||.|+|...
T Consensus 196 vV~A~G~~~ 204 (376)
T PRK11259 196 LVVSAGAWV 204 (376)
T ss_pred EEEecCcch
Confidence 999999543
No 127
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.38 E-value=1.8e-06 Score=92.24 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=75.3
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+.... . ...++...+.+.+++.++++. ...+++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----~------~d~e~~~~l~~~L~~~GI~i~-~~~~V~~i 237 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----G------EDEDIAHILREKLENDGVKIF-TGAALKGL 237 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----c------ccHHHHHHHHHHHHHCCCEEE-ECCEEEEE
Confidence 47899999999999999999999999999999875321 1 113345566777778885443 34678899
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.++..+.+... ++ ..+++||.|++|+|..|+..
T Consensus 238 ~~~~~~v~~~~~---g~-~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 238 NSYKKQALFEYE---GS-IQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEcCCEEEEEEC---Cc-eEEEEeCEEEEecCCccCCC
Confidence 877666665431 22 23799999999999998764
No 128
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.37 E-value=8.2e-06 Score=88.96 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=62.1
Q ss_pred hhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--Ce---EEEEeccCCeEEEEe
Q 041537 216 DLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KE---ITMKIKSTGAVCSIP 290 (547)
Q Consensus 216 ~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~---v~~~~~~~G~~~~i~ 290 (547)
.+.+.+|.+.++..--+..+...+ -+..+...+.+..+++|++++++++|+++.. ++ +.+.+..+|+..++.
T Consensus 123 e~~~~eP~l~~~~~ga~~~~dg~v---dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~ 199 (546)
T PRK11101 123 QALILEPAVNPALIGAVKVPDGTV---DPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIH 199 (546)
T ss_pred HHHHhCCCcCccceEEEEecCcEE---CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEE
Confidence 344556766544333344443222 2346666777778899999999999999853 33 344433345434599
Q ss_pred eceEEEccCCCCCcchHHHHHHhC----C-CCCcc-EEeCC
Q 041537 291 HGLVLWSTGVGTRPAIKDFMEQIG----Q-GKRRV-LATNE 325 (547)
Q Consensus 291 ~D~vv~a~G~~~~p~~~~l~~~~~----~-~~~g~-i~Vd~ 325 (547)
++.||.|+| ++...+....+ + ..+|. +.++.
T Consensus 200 A~~VVnAaG----~wa~~l~~~~g~~~~i~p~kG~~lv~~~ 236 (546)
T PRK11101 200 APVVVNAAG----IWGQHIAEYADLRIRMFPAKGSLLIMDH 236 (546)
T ss_pred CCEEEECCC----hhHHHHHHhcCCCCceeecceEEEEECC
Confidence 999999999 44445543333 2 35564 44554
No 129
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.36 E-value=2e-06 Score=91.68 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHh-CCcEEEcCceEEEEeC---CeEEEE--eccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCC--
Q 041537 245 ERISSFAEKKFQR-DGIEVLTECRVVNVSD---KEITMK--IKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQG-- 316 (547)
Q Consensus 245 ~~~~~~~~~~l~~-~GV~v~~~~~V~~v~~---~~v~~~--~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~-- 316 (547)
..+.+.+.+.+.+ .|+++++++.|+.++. +.+++. ...+|+..++.+|.||.|+|.... .+++.+|+.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~----~La~~~Gi~~~ 259 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI----PLLQKSGIPES 259 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH----HHHHHcCCCcc
Confidence 3566777777754 5999999999999853 333332 223353224899999999995433 455555543
Q ss_pred -------CCc-cEEeCCCCCcCCCC-CEEEeCccCc
Q 041537 317 -------KRR-VLATNEWLRVKECE-NVYALGDCAT 343 (547)
Q Consensus 317 -------~~g-~i~Vd~~l~~~~~~-~VfaiGD~a~ 343 (547)
-+| ++.++..-.+..+. .||-.+|...
T Consensus 260 ~~~~i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~~ 295 (497)
T PRK13339 260 KHLGGFPISGQFLRCTNPEVVKQHQAKVYSKEPVGT 295 (497)
T ss_pred CCCceEeeeEEEEEecCHHHhhhcCceEeCCCCCCC
Confidence 223 22333211111233 5999988653
No 130
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.36 E-value=2e-06 Score=91.40 Aligned_cols=100 Identities=18% Similarity=0.295 Sum_probs=73.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
+++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. ...++...+.+.+++.++++. ...+++.|
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------~~~~~~~~~~~~l~~~GI~i~-~~~~V~~i 224 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-----------EEPSVAALAKQYMEEDGITFL-LNAHTTEV 224 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------CCHHHHHHHHHHHHHcCCEEE-cCCEEEEE
Confidence 568999999999999999999999999999998764210 012333445666777884432 34578899
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.++..+.+... +. +++||.+|+|+|.+|+..
T Consensus 225 ~~~~~~v~v~~~---g~---~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 225 KNDGDQVLVVTE---DE---TYRFDALLYATGRKPNTE 256 (438)
T ss_pred EecCCEEEEEEC---Ce---EEEcCEEEEeeCCCCCcc
Confidence 876666554431 33 799999999999998754
No 131
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.36 E-value=2.7e-06 Score=89.80 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=33.3
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
.++|+|||||+||+++|..|++.|++|+|||+.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 579999999999999999999999999999997653
No 132
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.35 E-value=2.1e-06 Score=89.23 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=67.7
Q ss_pred eEEEECCchHHHHHHHhc--CCCCCeEEEEcCCCCCccCCC------------hhhhhccccC-----------------
Q 041537 30 RVVLLGTGWAGISFLKDL--DVSSYDVQVVSPQNYFAFTPL------------LPSVTCGTVE----------------- 78 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L--~~~g~~Vtlid~~~~~~~~p~------------l~~~~~g~~~----------------- 78 (547)
||+|||||+||+++|.+| ++.|.+|+|||++....++.. +........+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 699999999999999999 788999999998765422210 0011000000
Q ss_pred -----ccccchhHHHHHHhCCCcEEEEEEEEEEEECCCC--EEEEecCCCCCCceeeeecCEEEEccCCCcc
Q 041537 79 -----ARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKN--EVFCKSNIDKETRDFSLEYDYLIIAVGAQVN 143 (547)
Q Consensus 79 -----~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~--~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~ 143 (547)
...+...+.+.+...+ +.++.++|+.|+.... .|.+.+ |. ++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~--~~~~~~~V~~i~~~~~~~~v~~~~----g~---~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG--VIRLNARVTSIEETGDGVLVVLAD----GR---TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC--eEEEccEEEEEEecCceEEEEECC----CC---EEEeeEEEECCCcccc
Confidence 0001111222233223 6788999999998877 444444 54 8999999999996544
No 133
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.35 E-value=1.2e-05 Score=87.18 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTG 299 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G 299 (547)
..+.+.+.+.+++.|++|++++.|++|. +++++.....+|+. +.+|.||+|++
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~--~~ad~VI~a~~ 273 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGER--LDADAVVSNAD 273 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCE--EECCEEEECCc
Confidence 4678888888999999999999999985 34433333344664 89999999887
No 134
>PRK06184 hypothetical protein; Provisional
Probab=98.35 E-value=1.9e-06 Score=93.24 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=33.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
++.+|+|||||++||++|..|++.|++|+|||+++..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4579999999999999999999999999999997543
No 135
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.34 E-value=1.8e-06 Score=90.12 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=33.2
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
+.+|+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 569999999999999999999999999999988653
No 136
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.34 E-value=2e-06 Score=92.75 Aligned_cols=108 Identities=11% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC-CCccCCCh------------hhh-hcc-c---------------
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN-YFAFTPLL------------PSV-TCG-T--------------- 76 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~-~~~~~p~l------------~~~-~~g-~--------------- 76 (547)
..+||||||||+||+.||..+++.|.+|+|||++. ..++.+.. .++ ..| .
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 45899999999999999999999999999999874 33221111 000 000 0
Q ss_pred --------------cCccccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEE---EEecCCCCCCceeeeecCEEEEccC
Q 041537 77 --------------VEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEV---FCKSNIDKETRDFSLEYDYLIIAVG 139 (547)
Q Consensus 77 --------------~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v---~~~~~~~~g~~~~~i~yD~LViAtG 139 (547)
.+...+...+.+.+...+ ++++++++|+.+..++..| .+.+ |. .+.++.+|+|||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~-nV~I~q~~V~~Li~e~grV~GV~t~d----G~---~I~Ak~VIlATG 154 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQP-NLDLFQGEVEDLIVENGRVVGVVTQD----GL---EFRAKAVVLTTG 154 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCC-CcEEEEeEEEEEEecCCEEEEEEECC----CC---EEECCEEEEeeC
Confidence 000011122333344332 3677899999887666543 3433 44 899999999999
Q ss_pred CCc
Q 041537 140 AQV 142 (547)
Q Consensus 140 ~~~ 142 (547)
...
T Consensus 155 TFL 157 (618)
T PRK05192 155 TFL 157 (618)
T ss_pred cch
Confidence 743
No 137
>PRK06834 hypothetical protein; Provisional
Probab=98.34 E-value=2.3e-06 Score=91.94 Aligned_cols=112 Identities=16% Similarity=0.230 Sum_probs=69.9
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc--------CC----------Chhhhhc--------c----c
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF--------TP----------LLPSVTC--------G----T 76 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~--------~p----------~l~~~~~--------g----~ 76 (547)
+..+|+|||||++|+++|..|++.|++|+|||+.+.... .+ +...+.. + .
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 458999999999999999999999999999998754211 00 0000000 0 0
Q ss_pred cCccc---------------cchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCC
Q 041537 77 VEARS---------------IAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQ 141 (547)
Q Consensus 77 ~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~ 141 (547)
.+... +..-+.+.+++.++++. ...+++++..++..+.+... ++. ++.+|+||.|.|..
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~-~~~~v~~v~~~~~~v~v~~~--~g~---~i~a~~vVgADG~~ 155 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIY-RGREVTGFAQDDTGVDVELS--DGR---TLRAQYLVGCDGGR 155 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEE-cCCEEEEEEEcCCeEEEEEC--CCC---EEEeCEEEEecCCC
Confidence 00000 00112333455564443 36688888877666655431 143 79999999999987
Q ss_pred ccC
Q 041537 142 VNT 144 (547)
Q Consensus 142 ~~~ 144 (547)
+..
T Consensus 156 S~v 158 (488)
T PRK06834 156 SLV 158 (488)
T ss_pred CCc
Confidence 643
No 138
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.33 E-value=2.5e-06 Score=89.33 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
..+.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3467999999999999999999999999999999753
No 139
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.32 E-value=1.4e-06 Score=69.05 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=58.3
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEEEC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDA 109 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~ 109 (547)
+|+|||||+.|+.+|..|++.|.+|+||++++.+. +.. ..++...+.+.+++.++++. ....+..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~~---------~~~~~~~~~~~l~~~gV~v~-~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PGF---------DPDAAKILEEYLRKRGVEVH-TNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TTS---------SHHHHHHHHHHHHHTTEEEE-ESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hhc---------CHHHHHHHHHHHHHCCCEEE-eCCEEEEEEE
Confidence 69999999999999999999999999999998754 221 13445667788888885553 3668888887
Q ss_pred CCCE--EEEec
Q 041537 110 AKNE--VFCKS 118 (547)
Q Consensus 110 ~~~~--v~~~~ 118 (547)
++.. |++++
T Consensus 69 ~~~~~~V~~~~ 79 (80)
T PF00070_consen 69 DGDGVEVTLED 79 (80)
T ss_dssp ETTSEEEEEET
T ss_pred eCCEEEEEEec
Confidence 6654 54443
No 140
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.32 E-value=2.8e-06 Score=90.07 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=74.0
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|++|++.+...... . ..++...+.+.+++.++++. ...++..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~---------~-~~~~~~~~~~~l~~~gV~v~-~~~~v~~i 205 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKL---------F-DEEMNQIVEEELKKHEINLR-LNEEVDSI 205 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccc---------c-CHHHHHHHHHHHHHcCCEEE-eCCEEEEE
Confidence 4799999999999999999999999999999887542111 0 12344556777788884442 35688999
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.++..+.+.+ |+ +++||.||+|+|.+|+..
T Consensus 206 ~~~~~~v~~~~----g~---~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 206 EGEERVKVFTS----GG---VYQADMVILATGIKPNSE 236 (427)
T ss_pred ecCCCEEEEcC----CC---EEEeCEEEECCCccCCHH
Confidence 87765434443 44 799999999999988643
No 141
>PRK10015 oxidoreductase; Provisional
Probab=98.32 E-value=2.6e-06 Score=90.05 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=34.1
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
.++||+|||||+||++||+.|++.|++|+|||+.++.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999998764
No 142
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.31 E-value=2.5e-05 Score=82.25 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe-C--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVS-D--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~-~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
..+...+.+.+++.|++++.++.|++++ . +.+....+.+|+ +.++.||+|+|.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~---i~a~~vVvaagg 238 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGF---IGAKKVGVAVAG 238 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCce---EECCEEEECCCh
Confidence 3555666788899999999999999995 2 334323333453 899999998884
No 143
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.31 E-value=2.1e-06 Score=94.24 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=35.7
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
....+|||||+|.+|+++|..+++.|++|+|||+++..+.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 4468999999999999999999999999999999876544
No 144
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.30 E-value=2.3e-06 Score=89.73 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
++.+|+|||||++||++|..|++.|++|+|+|+.+..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 3578999999999999999999999999999998653
No 145
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.30 E-value=4.1e-05 Score=81.90 Aligned_cols=55 Identities=7% Similarity=0.105 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEeCCe-EEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVSDKE-ITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~-v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
+..+...+.+.+++.|++|+.++.|++++.++ +.+.. .+|+ +.+|.||+|+|...
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t-~~g~---v~A~~VV~Atga~s 237 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRT-PDGQ---VTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEe-CCcE---EECCEEEEcccccc
Confidence 34677888888999999999999999997644 33332 3453 89999999999543
No 146
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=3.8e-06 Score=90.15 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=72.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||++|+.+|..|++.|.+|+||++.+.+. | . ...++...+.+.+++.++++. ...+++.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il--~---~------~~~~~~~~l~~~l~~~gI~i~-~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL--P---T------EDAELSKEVARLLKKLGVRVV-TGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC--C---c------CCHHHHHHHHHHHHhcCCEEE-eCcEEEEE
Confidence 4799999999999999999999999999999887532 1 1 113345566677777885443 35578888
Q ss_pred EC--CCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 108 DA--AKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 108 d~--~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
+. +++........ |+ ..+++||.||+|+|.+|+...
T Consensus 248 ~~~~~~~~~~~~~~~--g~-~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 248 TLKKDGGVLIVAEHN--GE-EKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEecCCCEEEEEEeC--Cc-eEEEEeCEEEEeeCCccCCCC
Confidence 74 34432221111 32 247999999999999987643
No 147
>PRK07236 hypothetical protein; Provisional
Probab=98.29 E-value=4e-06 Score=87.62 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+++++|+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4568999999999999999999999999999999864
No 148
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.29 E-value=3.4e-06 Score=82.36 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=34.9
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFA 64 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~ 64 (547)
...||+|||||++||+||+.|++.|.+|+|+|+++.++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45799999999999999999999999999999997754
No 149
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.29 E-value=3.4e-06 Score=88.62 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=31.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCC--CeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSS--YDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g--~~Vtlid~~~~ 62 (547)
+++|+|||||++|+++|..|++.| ++|+|||+++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 478999999999999999999875 99999999754
No 150
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.28 E-value=9.2e-07 Score=81.39 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=49.0
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRN 94 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (547)
..||+||||||+||+||++|++.|.+|+++|++.++++..+.-..... .--+..+-+.+++..+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~---~iVv~~~a~~iL~e~g 93 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFN---KIVVREEADEILDEFG 93 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccc---eeeecchHHHHHHHhC
Confidence 458999999999999999999999999999999998764433222211 1234566778888887
No 151
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.28 E-value=4e-06 Score=89.78 Aligned_cols=105 Identities=27% Similarity=0.408 Sum_probs=75.2
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. |. ...++...+.+.+++.++++. ...+++.|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~~---------~~~~~~~~l~~~l~~~gV~i~-~~~~V~~i 239 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL--PG---------EDKEISKLAERALKKRGIKIK-TGAKAKKV 239 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--Cc---------CCHHHHHHHHHHHHHcCCEEE-eCCEEEEE
Confidence 4789999999999999999999999999999987642 11 112445566777778884442 34578899
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
+.+.+.+.+.... +.+..++++|.+|+|+|.+|+...
T Consensus 240 ~~~~~~v~v~~~~--gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 240 EQTDDGVTVTLED--GGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEeCCEEEEEEEe--CCeeEEEEeCEEEEeeCCccCCCC
Confidence 8765555443211 212247999999999999987653
No 152
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.28 E-value=4e-06 Score=87.64 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=33.0
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
..++|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 356899999999999999999999999999999754
No 153
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.28 E-value=4.6e-06 Score=87.76 Aligned_cols=104 Identities=21% Similarity=0.351 Sum_probs=77.3
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
..+++++|||||+.|+..|..+++.|.+|||||+.+.+. | ....++...+.+.+++.++.+ +...+++
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL--p---------~~D~ei~~~~~~~l~~~gv~i-~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL--P---------GEDPEISKELTKQLEKGGVKI-LLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--C---------cCCHHHHHHHHHHHHhCCeEE-EccceEE
Confidence 456789999999999999999999999999999998754 1 122466777788888766333 3456777
Q ss_pred EEECCCC--EEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 106 KIDAAKN--EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 106 ~id~~~~--~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
.+...+. .+.+++ +. ...+.+|++++|+|.+|+..+
T Consensus 239 ~~~~~~~~v~v~~~~----g~-~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 239 AVEKKDDGVLVTLED----GE-GGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred EEEecCCeEEEEEec----CC-CCEEEeeEEEEccCCccCCCC
Confidence 7766554 344444 22 116889999999999988764
No 154
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.28 E-value=4.9e-05 Score=74.51 Aligned_cols=90 Identities=9% Similarity=0.164 Sum_probs=61.9
Q ss_pred HHhhhhhCCC-CC-CCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe----CCeEEEEeccCCeEE
Q 041537 214 QEDLINLYPT-VK-DLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS----DKEITMKIKSTGAVC 287 (547)
Q Consensus 214 ~~~~~~~~~~-~~-~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~----~~~v~~~~~~~G~~~ 287 (547)
.+++++.||. .+ +.-.+-+++....+. ......+.++..+++.|+.++.+..|+.++ ++..+...+.+|..
T Consensus 122 seEvrk~fP~~~~l~d~~~G~~n~~gGvi--~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~- 198 (399)
T KOG2820|consen 122 SEEVRKRFPSNIPLPDGWQGVVNESGGVI--NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSI- 198 (399)
T ss_pred HHHHHHhCCCCccCCcchhhcccccccEe--eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCe-
Confidence 4567788883 33 333444554443322 235677888999999999999999999886 44444433455876
Q ss_pred EEeeceEEEccCCCCCcchHHHHH
Q 041537 288 SIPHGLVLWSTGVGTRPAIKDFME 311 (547)
Q Consensus 288 ~i~~D~vv~a~G~~~~p~~~~l~~ 311 (547)
+.++.+|+|+| +|+..|+.
T Consensus 199 -Y~akkiI~t~G----aWi~klL~ 217 (399)
T KOG2820|consen 199 -YHAKKIIFTVG----AWINKLLP 217 (399)
T ss_pred -eecceEEEEec----HHHHhhcC
Confidence 89999999999 66666654
No 155
>PRK07233 hypothetical protein; Provisional
Probab=98.27 E-value=7.8e-06 Score=86.63 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=34.7
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
+|||||||++||+||+.|++.|++|+|+|+++..++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 6999999999999999999999999999999988764
No 156
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.26 E-value=3.8e-06 Score=89.98 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=74.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. |.+ ..++...+.+.+++.++++. ...+++.|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--~~~---------~~~~~~~~~~~l~~~gi~i~-~~~~v~~i 237 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL--PGE---------DAEVSKVVAKALKKKGVKIL-TNTKVTAV 237 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--CCC---------CHHHHHHHHHHHHHcCCEEE-eCCEEEEE
Confidence 4789999999999999999999999999999987632 111 12334456667777774442 35588888
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.+++.+.+.... |. ..++++|.||+|+|..|+..
T Consensus 238 ~~~~~~v~v~~~~--g~-~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 238 EKNDDQVVYENKG--GE-TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEeCCEEEEEEeC--Cc-EEEEEeCEEEEecCCcccCC
Confidence 8766666554211 31 23799999999999998765
No 157
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.26 E-value=4.2e-06 Score=88.01 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3689999999999999999999999999999876
No 158
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.26 E-value=2.7e-05 Score=80.29 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=29.4
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+|+|||+|.|||++|..|.+. ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999877 99999998654
No 159
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.25 E-value=5.8e-06 Score=86.08 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=72.5
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEE-EEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFW-EAEAIK 106 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~ 106 (547)
.++|+|||||+.|+.+|..|.+.|.+|+||++.+.+.- . ..+..+...+.+.+++.+ ++++ ..++..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-----~-----~~~~~~~~~l~~~l~~~g--V~i~~~~~v~~ 208 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-----S-----LMPPEVSSRLQHRLTEMG--VHLLLKSQLQG 208 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-----h-----hCCHHHHHHHHHHHHhCC--CEEEECCeEEE
Confidence 46899999999999999999999999999999876421 0 011233455667777888 4444 568888
Q ss_pred EECCCCEE--EEecCCCCCCceeeeecCEEEEccCCCccC
Q 041537 107 IDAAKNEV--FCKSNIDKETRDFSLEYDYLIIAVGAQVNT 144 (547)
Q Consensus 107 id~~~~~v--~~~~~~~~g~~~~~i~yD~LViAtG~~~~~ 144 (547)
++.+...+ .+.+ |. ++++|.+|+|+|..|+.
T Consensus 209 i~~~~~~~~v~~~~----g~---~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 209 LEKTDSGIRATLDS----GR---SIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EEccCCEEEEEEcC----Cc---EEECCEEEECcCCCcch
Confidence 88765543 3333 44 89999999999998864
No 160
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.25 E-value=9.4e-06 Score=73.31 Aligned_cols=102 Identities=17% Similarity=0.283 Sum_probs=62.8
Q ss_pred EEECCchHHHHHHHhcCCC-----CCeEEEEcCCCCCccCCC---------------------------hhhhhcccc--
Q 041537 32 VLLGTGWAGISFLKDLDVS-----SYDVQVVSPQNYFAFTPL---------------------------LPSVTCGTV-- 77 (547)
Q Consensus 32 vIIGgG~aGl~aA~~L~~~-----g~~Vtlid~~~~~~~~p~---------------------------l~~~~~g~~-- 77 (547)
+|||+|++|++++.+|.+. ..+|+|||+++.....+. +.++.....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999743 678999999654201110 000110000
Q ss_pred -----Ccccc------chh----HHHHHHh--CCCcEEEEEEEEEEEECCCCE--EEEecCCCCCCceeeeecCEEEEcc
Q 041537 78 -----EARSI------AEP----VRNIIKK--RNAEIQFWEAEAIKIDAAKNE--VFCKSNIDKETRDFSLEYDYLIIAV 138 (547)
Q Consensus 78 -----~~~~~------~~~----~~~~~~~--~~~~v~~~~~~v~~id~~~~~--v~~~~~~~~g~~~~~i~yD~LViAt 138 (547)
.+..+ -.+ ++.+++. .++.++++..+|++|++.... |.+.+ |. .+.+|+||+||
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~----g~---~~~~d~VvLa~ 153 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTAD----GQ---SIRADAVVLAT 153 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECC----CC---EEEeCEEEECC
Confidence 00010 011 2222222 255788899999999987765 44443 54 89999999999
Q ss_pred CC
Q 041537 139 GA 140 (547)
Q Consensus 139 G~ 140 (547)
|.
T Consensus 154 Gh 155 (156)
T PF13454_consen 154 GH 155 (156)
T ss_pred CC
Confidence 95
No 161
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.24 E-value=5.3e-06 Score=86.98 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=31.6
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
.||+||||||||++||..|++.|++|+|+|++..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4899999999999999999999999999998754
No 162
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.24 E-value=9e-05 Score=79.55 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCC-cEEEcCceEEEEeC--Ce-EEE--EeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC
Q 041537 245 ERISSFAEKKFQRDG-IEVLTECRVVNVSD--KE-ITM--KIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ 315 (547)
Q Consensus 245 ~~~~~~~~~~l~~~G-V~v~~~~~V~~v~~--~~-v~~--~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~ 315 (547)
..+.+.+.+.+++.| ++++++++|++++. ++ +.+ .+..+|+..++.++.||.|+|.... .+.+.+++
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~----~L~~~~Gi 255 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL----PLLQKSGI 255 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH----HHHHHcCC
Confidence 467777888888886 99999999999863 33 333 2223354224899999999995443 44444444
No 163
>PRK08244 hypothetical protein; Provisional
Probab=98.23 E-value=4.7e-06 Score=89.99 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=32.5
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
.++|+||||||+||++|..|++.|++|+|||+++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47899999999999999999999999999998754
No 164
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.22 E-value=5.3e-05 Score=83.83 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=58.8
Q ss_pred HhhhhhCCCCCCC-----ceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC----Ce---EEEEecc
Q 041537 215 EDLINLYPTVKDL-----VRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD----KE---ITMKIKS 282 (547)
Q Consensus 215 ~~~~~~~~~~~~~-----~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~----~~---v~~~~~~ 282 (547)
+.+.+.+|.+.+. ..-.++. .+... -+..+...+.+.+++.|++++.++.|.++.. +. +.+.+..
T Consensus 200 ~e~~~~~P~L~~~~~~~~l~ga~~~-~Dg~v--dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~ 276 (627)
T PLN02464 200 KESLELFPTLAKKGKDGSLKGTVVY-YDGQM--NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNL 276 (627)
T ss_pred HHHHHhCCCCCccccccceeEEEEe-cCcEE--cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECC
Confidence 3455567877643 3223332 23222 2457888888889999999999999999742 33 3343333
Q ss_pred CCeEEEEeeceEEEccCCCCCcchHHHHHHh
Q 041537 283 TGAVCSIPHGLVLWSTGVGTRPAIKDFMEQI 313 (547)
Q Consensus 283 ~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~ 313 (547)
+|+..++.+|.||.|+| ++...+...+
T Consensus 277 tg~~~~i~a~~VVnAaG----aws~~l~~~~ 303 (627)
T PLN02464 277 TGKEFDVYAKVVVNAAG----PFCDEVRKMA 303 (627)
T ss_pred CCcEEEEEeCEEEECCC----HhHHHHHHhc
Confidence 45544589999999999 5554554433
No 165
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.21 E-value=8.3e-06 Score=86.89 Aligned_cols=98 Identities=30% Similarity=0.437 Sum_probs=70.9
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCcc------CCcc-----c--HHHHHHHHHHHHhC
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHI------LNSF-----D--ERISSFAEKKFQRD 258 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i------l~~~-----~--~~~~~~~~~~l~~~ 258 (547)
+|||||||+.|+++|..|+++. ++.+|+|+++.+.+ +|.+ + ..+.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999998752 25799999998863 2211 1 12233345668889
Q ss_pred CcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.|++++. +.+.+.+..+|+..++++|.+|+|+|..
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 999999999999975 4466654333554234499999999964
No 166
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=8.5e-06 Score=87.52 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=73.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||+|+.|+.+|..|++.|.+|+||++.+.+. +.. ..++...+.+.++..++++. ...+|+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~~~---------d~~~~~~~~~~l~~~gi~i~-~~~~v~~i 250 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL--AAA---------DEQVAKEAAKAFTKQGLDIH-LGVKIGEI 250 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC--CcC---------CHHHHHHHHHHHHHcCcEEE-eCcEEEEE
Confidence 4799999999999999999999999999999987542 110 13344556666777774432 35588899
Q ss_pred ECCCCEEEE--ecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEVFC--KSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v~~--~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.+...+.+ .+.. |+ +.++++|.|++|+|.+|+..
T Consensus 251 ~~~~~~v~v~~~~~~--g~-~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 251 KTGGKGVSVAYTDAD--GE-AQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred EEcCCEEEEEEEeCC--Cc-eeEEEcCEEEEccCCccCCC
Confidence 876554433 3311 21 24799999999999998765
No 167
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.20 E-value=7.1e-06 Score=86.00 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=70.3
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+||||++.+.+... ..+..+...+.+.+++.++++. ...+++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~GV~i~-~~~~V~~i 212 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------NAPPPVQRYLLQRHQQAGVRIL-LNNAIEHV 212 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------hcCHHHHHHHHHHHHHCCCEEE-eCCeeEEE
Confidence 468999999999999999999999999999998753211 0112334456666777884442 35678888
Q ss_pred ECCCC-EEEEecCCCCCCceeeeecCEEEEccCCCccC
Q 041537 108 DAAKN-EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNT 144 (547)
Q Consensus 108 d~~~~-~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~ 144 (547)
+.+.. .+.+.+ |+ ++++|.+|+|+|.+|+.
T Consensus 213 ~~~~~~~v~l~~----g~---~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 213 VDGEKVELTLQS----GE---TLQADVVIYGIGISAND 243 (396)
T ss_pred EcCCEEEEEECC----CC---EEECCEEEECCCCChhh
Confidence 75322 234443 44 79999999999998753
No 168
>PRK05868 hypothetical protein; Validated
Probab=98.20 E-value=9e-06 Score=84.44 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=33.1
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
|++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 568999999999999999999999999999987653
No 169
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.18 E-value=8e-06 Score=85.33 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ 60 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~ 60 (547)
+++|+|||||++||++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 578999999999999999999999999999997
No 170
>PRK06126 hypothetical protein; Provisional
Probab=98.17 E-value=9.9e-06 Score=88.63 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=33.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
..++|+|||||++||++|..|++.|++|+|||+++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 357999999999999999999999999999998764
No 171
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.16 E-value=7.6e-06 Score=85.25 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=31.3
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+|+|||||+||+++|..|++.|++|+|+|+++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 699999999999999999999999999999864
No 172
>PRK06753 hypothetical protein; Provisional
Probab=98.16 E-value=5.1e-06 Score=86.34 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=32.3
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
.+|+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 37999999999999999999999999999998653
No 173
>PRK09126 hypothetical protein; Provisional
Probab=98.16 E-value=9.4e-06 Score=84.92 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=33.4
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
++.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 468999999999999999999999999999999864
No 174
>PRK06370 mercuric reductase; Validated
Probab=98.15 E-value=9.8e-06 Score=86.79 Aligned_cols=102 Identities=22% Similarity=0.345 Sum_probs=73.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . ...++...+...+++.++++. ...++..+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-----~------~~~~~~~~l~~~l~~~GV~i~-~~~~V~~i 238 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-----R------EDEDVAAAVREILEREGIDVR-LNAECIRV 238 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-----c------cCHHHHHHHHHHHHhCCCEEE-eCCEEEEE
Confidence 57999999999999999999999999999999876421 1 112344566777778884442 35688888
Q ss_pred ECCCCE--EEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNE--VFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~--v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+..+.. +.+.... + ..++++|.||+|+|.+|+..
T Consensus 239 ~~~~~~~~v~~~~~~--~--~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 239 ERDGDGIAVGLDCNG--G--APEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEcCCEEEEEEEeCC--C--ceEEEeCEEEECcCCCcCCC
Confidence 876543 3332210 1 23799999999999998764
No 175
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.14 E-value=1.4e-05 Score=87.25 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=34.1
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
...++|+|||||++||++|..|++.|++|+|||+++.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4568999999999999999999999999999999864
No 176
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.14 E-value=1.1e-05 Score=86.31 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=73.1
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||+|+.|+.+|..|++.|.+|+||++.+.+. |. . ..++...+.+.++..++++. ...+|+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~~--------~-d~~~~~~l~~~l~~~gV~i~-~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL--PR--------E-EPEISAAVEEALAEEGIEVV-TSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--Cc--------c-CHHHHHHHHHHHHHcCCEEE-cCcEEEEE
Confidence 4799999999999999999999999999999987532 11 0 12344566777777874442 34568888
Q ss_pred ECCCCE--EEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 108 DAAKNE--VFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 108 d~~~~~--v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
+.++.. +.+... +. ..++++|.+|+|+|.+|+..+
T Consensus 234 ~~~~~~~~v~~~~~---~~-~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 234 SVRGGGKIITVEKP---GG-QGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEcCCEEEEEEEeC---CC-ceEEEeCEEEEeECCCcCCCC
Confidence 765443 333321 11 237999999999999987653
No 177
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.14 E-value=2.3e-05 Score=82.20 Aligned_cols=73 Identities=14% Similarity=0.247 Sum_probs=50.4
Q ss_pred CceEEEEecCCccCCc--ccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 227 LVRITLIQSGDHILNS--FDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 227 ~~~V~lv~~~~~il~~--~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
+..++..+. .++.|. ....+.+.+.+.+++.||++++++.|++++. +.+.+.. +++. +.+|.||+|+|...
T Consensus 86 Gv~~~~~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~--~~~~--i~ad~VIlAtG~~s 160 (400)
T TIGR00275 86 GLELKVEED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET--SGGE--YEADKVILATGGLS 160 (400)
T ss_pred CCeeEEecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE--CCcE--EEcCEEEECCCCcc
Confidence 455554433 234442 3467888899999999999999999999854 3333333 2443 89999999999644
Q ss_pred Cc
Q 041537 303 RP 304 (547)
Q Consensus 303 ~p 304 (547)
.|
T Consensus 161 ~p 162 (400)
T TIGR00275 161 YP 162 (400)
T ss_pred cC
Confidence 33
No 178
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.13 E-value=6.6e-05 Score=76.61 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=61.6
Q ss_pred CccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhC
Q 041537 237 DHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIG 314 (547)
Q Consensus 237 ~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~ 314 (547)
+++....-+.+.+.+.+.|+++|++++++++|..++ ++.+....+.+|.+ +++|.||+|+|-..+.|.+.+.+++|
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~--i~~~~vvlA~Grsg~dw~~~l~~K~G 242 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEE--IEADYVVLAPGRSGRDWFEMLHKKLG 242 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcE--EecCEEEEccCcchHHHHHHHHHhcC
Confidence 344444557889999999999999999999998875 44455555556865 99999999999888888888888877
Q ss_pred C
Q 041537 315 Q 315 (547)
Q Consensus 315 ~ 315 (547)
+
T Consensus 243 v 243 (486)
T COG2509 243 V 243 (486)
T ss_pred c
Confidence 6
No 179
>PRK07190 hypothetical protein; Provisional
Probab=98.13 E-value=1.1e-05 Score=86.56 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=32.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
..+|+|||||++||++|..|++.|.+|+|||+.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 47999999999999999999999999999999764
No 180
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.13 E-value=0.00013 Score=71.43 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=88.2
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-----------------------------
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS----------------------------- 242 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~----------------------------- 242 (547)
.|+|||+|++|+-+|..+++. +.+|.++++.+.+...
T Consensus 27 DVvIVGgGpAGl~AA~~la~~--------------G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKA--------------GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhC--------------CCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 799999999999999998864 6788888876543210
Q ss_pred ---------ccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CC-eEE---EEec---cCC---eEEEEeeceEEEccCCC
Q 041537 243 ---------FDERISSFAEKKFQRDGIEVLTECRVVNVS--DK-EIT---MKIK---STG---AVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 243 ---------~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~-~v~---~~~~---~~G---~~~~i~~D~vv~a~G~~ 301 (547)
-+..+...+.+..++.|+++++++.|..+. ++ .+. +... .+| +...+.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 112445556666778899999999998874 33 332 2110 011 22359999999999952
Q ss_pred CCcchHHHHHHhC-----CC-------CCc-cEEeCCCCCcCCCCCEEEeCccCcc
Q 041537 302 TRPAIKDFMEQIG-----QG-------KRR-VLATNEWLRVKECENVYALGDCATI 344 (547)
Q Consensus 302 ~~p~~~~l~~~~~-----~~-------~~g-~i~Vd~~l~~~~~~~VfaiGD~a~~ 344 (547)
.+..+.+....+ +. +++ ...|+.+-++ +|++|++|=.++.
T Consensus 173 -a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~ 225 (257)
T PRK04176 173 -AEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANA 225 (257)
T ss_pred -cHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhh
Confidence 334444444322 11 122 2344444444 8999999998764
No 181
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.13 E-value=4.5e-06 Score=79.24 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
+.+|+|||+|++|++||..|+..|++|||+||..
T Consensus 1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 3579999999999999999999999999999853
No 182
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.12 E-value=9.6e-06 Score=84.52 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=31.1
Q ss_pred eEEEECCchHHHHHHHhcCCCC-CeEEEEcCCCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSS-YDVQVVSPQNY 62 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtlid~~~~ 62 (547)
||+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 6999999999999999999999 99999998754
No 183
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.12 E-value=8.7e-05 Score=79.28 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=34.9
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p 67 (547)
+|+|||||++||++|+.|.+.|++|+|+|++++.++..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 59999999999999999999999999999999877643
No 184
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.12 E-value=1.7e-05 Score=83.07 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=32.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+.+|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 57899999999999999999999999999999864
No 185
>PRK14694 putative mercuric reductase; Provisional
Probab=98.12 E-value=1.6e-05 Score=85.19 Aligned_cols=98 Identities=17% Similarity=0.338 Sum_probs=72.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEE-EEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFW-EAEAIK 106 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~ 106 (547)
.++|+|||+|+.|+.+|..|++.|.+|+|+++...+ +. ...++...+.+.+++.+ ++++ ..++..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l------~~------~~~~~~~~l~~~l~~~G--I~v~~~~~v~~ 243 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL------SQ------EDPAVGEAIEAAFRREG--IEVLKQTQASE 243 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC------CC------CCHHHHHHHHHHHHhCC--CEEEeCCEEEE
Confidence 479999999999999999999999999999864211 11 11234566777888888 4444 458888
Q ss_pred EECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 107 IDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 107 id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
++.++..+.+... +. ++++|.||+|+|.+|+..
T Consensus 244 i~~~~~~~~v~~~---~~---~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 244 VDYNGREFILETN---AG---TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred EEEcCCEEEEEEC---CC---EEEeCEEEEccCCCCCcC
Confidence 8877665544421 22 799999999999998764
No 186
>PLN02985 squalene monooxygenase
Probab=98.11 E-value=2.1e-05 Score=85.00 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=33.1
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
...+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 456799999999999999999999999999999864
No 187
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.11 E-value=1.2e-05 Score=84.18 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.1
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCC---CCeEEEEcCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVS---SYDVQVVSPQ 60 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~---g~~Vtlid~~ 60 (547)
|++.+|+|||||+||+++|..|++. |++|+|+|+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3567999999999999999999987 9999999994
No 188
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.11 E-value=3.7e-05 Score=81.43 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEeC-C---eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhC-----
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVSD-K---EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIG----- 314 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~-~---~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~----- 314 (547)
+.++.-.......+.|-++++.++|+.+.. + +|.+.+..+|++.++.++.||-|+| ||+..+.+..+
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaG----pW~d~i~~~~~~~~~~ 238 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAG----PWVDEILEMAGLEQSP 238 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCC----ccHHHHHHhhcccCCC
Confidence 346777777788899999999999999854 2 3667776778888899999999999 78777755542
Q ss_pred ---C-CCCc-cEEeCCCCC
Q 041537 315 ---Q-GKRR-VLATNEWLR 328 (547)
Q Consensus 315 ---~-~~~g-~i~Vd~~l~ 328 (547)
+ ..+| .|+|+..+.
T Consensus 239 ~~~vr~skGsHlVv~~~~~ 257 (532)
T COG0578 239 HIGVRPSKGSHLVVDKKFP 257 (532)
T ss_pred CccceeccceEEEecccCC
Confidence 2 2345 577777443
No 189
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.11 E-value=0.00011 Score=77.54 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEE--eCCe---EEEEeccCCeEEEEeeceEEEccCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNV--SDKE---ITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v--~~~~---v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
...+.+.+.+.++++||+|+++++++++ +++. +.+.+..+|+..++.++.||+|+|-
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 4678888999999999999999999998 4454 3444335677777999999999994
No 190
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.11 E-value=1.8e-05 Score=84.79 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=31.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
|++|||||||.|||+||..+++.|.+|+|||+.+
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999999963
No 191
>PRK07588 hypothetical protein; Provisional
Probab=98.11 E-value=8.5e-06 Score=85.26 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=32.1
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 47999999999999999999999999999987653
No 192
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.10 E-value=2.2e-06 Score=65.57 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=30.5
Q ss_pred EECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 33 LLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 33 IIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
|||||++||++|+.|++.|++|+|+|+++..+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 8999999999999999999999999999887654
No 193
>PLN02487 zeta-carotene desaturase
Probab=98.10 E-value=9.5e-05 Score=80.37 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=35.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
++++|+|||||++||++|..|.+.|++|+|+|+++..++
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG 112 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG 112 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCC
Confidence 456999999999999999999999999999999988754
No 194
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.10 E-value=1.3e-05 Score=85.10 Aligned_cols=97 Identities=22% Similarity=0.365 Sum_probs=73.2
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. +. ...++...+.+.+++.++++. ...+++.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--~~---------~d~~~~~~l~~~l~~~gI~i~-~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--KL---------MDADMNQPILDELDKREIPYR-LNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--hh---------cCHHHHHHHHHHHHhcCCEEE-ECCeEEEE
Confidence 4689999999999999999999999999999987532 11 112345567777888885443 35678888
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+. ..+.+.+ |+ .+++|.+++|+|.+|+..
T Consensus 216 ~~--~~v~~~~----g~---~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 216 NG--NEVTFKS----GK---VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred eC--CEEEECC----CC---EEEeCEEEECcCCCcChH
Confidence 74 4666654 44 789999999999998754
No 195
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.10 E-value=2.6e-05 Score=85.38 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=35.3
Q ss_pred CCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 24 KEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 24 ~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
....+.+|+|||||++||++|..|++.|++|+|||+++..
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 3345679999999999999999999999999999998643
No 196
>PRK07045 putative monooxygenase; Reviewed
Probab=98.09 E-value=1.5e-05 Score=83.24 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=33.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
.+.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4579999999999999999999999999999987754
No 197
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.09 E-value=1.8e-05 Score=82.80 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=32.5
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
+.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35799999999999999999999999999999875
No 198
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.09 E-value=4e-05 Score=80.00 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=33.8
Q ss_pred CeEEEECCchHHHHHHHhcCCCC--CeEEEEcCCCCCcc
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSS--YDVQVVSPQNYFAF 65 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g--~~Vtlid~~~~~~~ 65 (547)
++|+|||||++||++|++|++.+ ++|+|+|+.++.++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 47999999999999999999877 99999999988765
No 199
>PRK08013 oxidoreductase; Provisional
Probab=98.09 E-value=1.4e-05 Score=83.91 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=33.1
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+.++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 357999999999999999999999999999998764
No 200
>PRK11445 putative oxidoreductase; Provisional
Probab=98.08 E-value=1.7e-05 Score=81.74 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+++|+|||||+||+++|..|++. ++|+|+|+++.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 47999999999999999999988 99999998864
No 201
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.08 E-value=1.7e-05 Score=84.89 Aligned_cols=101 Identities=15% Similarity=0.290 Sum_probs=73.2
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. +. ...++...+.+.+++.++++. ...+++.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~~---------~d~~~~~~l~~~l~~~gI~v~-~~~~v~~i 242 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL--SF---------LDDEISDALSYHLRDSGVTIR-HNEEVEKV 242 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--Cc---------CCHHHHHHHHHHHHHcCCEEE-ECCEEEEE
Confidence 5799999999999999999999999999999987532 10 113345566677777774442 35688888
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+..+..+.+... ++. ++++|.+|+|+|.+|+..
T Consensus 243 ~~~~~~~~v~~~--~g~---~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 243 EGGDDGVIVHLK--SGK---KIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEeCCeEEEEEC--CCC---EEEeCEEEEeecCCcccc
Confidence 765444443311 143 799999999999998764
No 202
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.08 E-value=1.7e-05 Score=84.59 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=71.5
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. +. . ..++...+.+.+++.++++. ...++..+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-----~~-----~-d~~~~~~l~~~l~~~gV~i~-~~~~v~~i 233 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-----RG-----F-DDDMRALLARNMEGRGIRIH-PQTSLTSI 233 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-----cc-----c-CHHHHHHHHHHHHHCCCEEE-eCCEEEEE
Confidence 5789999999999999999999999999999876532 11 1 12344556667777884442 35578888
Q ss_pred ECCCCE--EEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNE--VFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~--v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+..... +.+.+ +. ++++|.+|+|+|..|+..
T Consensus 234 ~~~~~~~~v~~~~----g~---~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 234 TKTDDGLKVTLSH----GE---EIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEcCCeEEEEEcC----Cc---EeecCEEEEeeCCCcCCC
Confidence 754433 33332 43 799999999999998754
No 203
>PLN02612 phytoene desaturase
Probab=98.07 E-value=0.00032 Score=76.85 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=37.8
Q ss_pred CCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 24 KEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 24 ~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
....+++|+|||||++||+||++|.+.|++|+|+|++++.++.
T Consensus 89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 3445689999999999999999999999999999999876654
No 204
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.07 E-value=1.2e-05 Score=84.36 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=32.5
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
..+|+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 36899999999999999999999999999998765
No 205
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.06 E-value=9.5e-06 Score=85.61 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=31.5
Q ss_pred CeEEEECCchHHHHHHHhcCCCC-CeEEEEcCCCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSS-YDVQVVSPQNYF 63 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g-~~Vtlid~~~~~ 63 (547)
.+|+|||||++||++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 37999999999999999999887 599999998664
No 206
>PRK07846 mycothione reductase; Reviewed
Probab=98.06 E-value=2.1e-05 Score=83.81 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=70.2
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
+++|+|||||+.|+.+|..|++.|.+|+||++.+.+. +. .+ .++...+.++++ .++++. ...+++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll--~~--------~d-~~~~~~l~~l~~-~~v~i~-~~~~v~~i 232 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL--RH--------LD-DDISERFTELAS-KRWDVR-LGRNVVGV 232 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--cc--------cC-HHHHHHHHHHHh-cCeEEE-eCCEEEEE
Confidence 5799999999999999999999999999999987543 11 11 223333444443 453332 35688888
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
+.+++.+.+... ++. ++++|.|++|+|.+|+...
T Consensus 233 ~~~~~~v~v~~~--~g~---~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 233 SQDGSGVTLRLD--DGS---TVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEcCCEEEEEEC--CCc---EeecCEEEEEECCccCccc
Confidence 876554433321 143 7999999999999987654
No 207
>PRK06116 glutathione reductase; Validated
Probab=98.05 E-value=2e-05 Score=84.06 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
+++|+|||||+.|+.+|..|++.|.+|+++++.+.+. + . ...++...+.+.+++.++++. ...++..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~---~------~~~~~~~~l~~~L~~~GV~i~-~~~~V~~i 234 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL--R---G------FDPDIRETLVEEMEKKGIRLH-TNAVPKAV 234 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc--c---c------cCHHHHHHHHHHHHHCCcEEE-CCCEEEEE
Confidence 5799999999999999999999999999999886532 1 1 112345566777788884442 35678888
Q ss_pred ECCCC---EEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKN---EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~---~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.+.. .+.+.+ |. ++++|.+|+|+|..|+..
T Consensus 235 ~~~~~g~~~v~~~~----g~---~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 235 EKNADGSLTLTLED----GE---TLTVDCLIWAIGREPNTD 268 (450)
T ss_pred EEcCCceEEEEEcC----Cc---EEEeCEEEEeeCCCcCCC
Confidence 76432 233333 43 799999999999998765
No 208
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.05 E-value=2.4e-05 Score=83.75 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=73.0
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
..++|+|||||+.|+.+|..|++.|.+|+||++.+... +. .+ .++...+.+.+++.++++. ...+++.
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-----~~-----~d-~~~~~~l~~~l~~~gV~i~-~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-----PG-----TD-TETAKTLQKALTKQGMKFK-LGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-----CC-----CC-HHHHHHHHHHHHhcCCEEE-ECcEEEE
Confidence 35799999999999999999999999999999876532 11 11 2344556777778884442 3557888
Q ss_pred EECCCCEE--EEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 107 IDAAKNEV--FCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 107 id~~~~~v--~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+..+...+ .+.... .+. ..++++|.|++|+|.+|+..
T Consensus 241 i~~~~~~v~v~~~~~~-~g~-~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 241 ATAGADGVSLTLEPAA-GGA-AETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEcCCeEEEEEEEcC-CCc-eeEEEeCEEEEccCCccccc
Confidence 87654433 333211 011 23799999999999998754
No 209
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.04 E-value=2.5e-05 Score=80.92 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=62.9
Q ss_pred eEEEECCchHHHHHHHhcCCC--CCeEEEEcCCCCCcc----C---CChhh--------hhccccCcccc----------
Q 041537 30 RVVLLGTGWAGISFLKDLDVS--SYDVQVVSPQNYFAF----T---PLLPS--------VTCGTVEARSI---------- 82 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtlid~~~~~~~----~---p~l~~--------~~~g~~~~~~~---------- 82 (547)
||+|||||+||+++|..|++. |++|+|+|+.+.... . ..+.. ..........+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 699999999999999999865 999999999763321 0 00000 00000000000
Q ss_pred -----c--hhHHH-HHHhCCCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCcc
Q 041537 83 -----A--EPVRN-IIKKRNAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVN 143 (547)
Q Consensus 83 -----~--~~~~~-~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~ 143 (547)
. ..+.+ +++..+..+. ..++|+.++++ .|++.+ |. ++.+|.||-|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~-~~~~V~~v~~~--~v~l~d----g~---~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVI-LGRKAVGLDAD--GVDLAP----GT---RINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEE-ecCEEEEEeCC--EEEECC----CC---EEEeeEEEECCCCCCC
Confidence 0 01112 2233333354 37788888654 477654 54 8999999999997753
No 210
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.04 E-value=0.00016 Score=77.44 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=33.7
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
+|+|||||++||++|..|++.|++|+|+|+++..++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 589999999999999999999999999999988765
No 211
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.02 E-value=2.9e-05 Score=81.20 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=32.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47899999999999999999999999999999874
No 212
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.02 E-value=7e-05 Score=75.56 Aligned_cols=96 Identities=25% Similarity=0.412 Sum_probs=73.4
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC--------------------------C----
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL--------------------------N---- 241 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il--------------------------~---- 241 (547)
.|+|||||+.|+=+|..+.+. +.+|+|++.++.+. |
T Consensus 5 dviIIGgGpAGlMaA~~aa~~--------------G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~ 70 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAAKA--------------GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGH 70 (408)
T ss_pred eEEEECCCHHHHHHHHHHhhc--------------CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcch
Confidence 799999999999999998875 67888888776532 1
Q ss_pred --------------------------------cc-----cHHHHHHHHHHHHhCCcEEEcCceEEEEeCCe--EEEEecc
Q 041537 242 --------------------------------SF-----DERISSFAEKKFQRDGIEVLTECRVVNVSDKE--ITMKIKS 282 (547)
Q Consensus 242 --------------------------------~~-----~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~--v~~~~~~ 282 (547)
.| ...+.+.+.+.+++.||+++++++|.+++.+. ..+.. .
T Consensus 71 fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t-~ 149 (408)
T COG2081 71 FLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT-S 149 (408)
T ss_pred HHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc-C
Confidence 00 11445677788899999999999999998763 44443 4
Q ss_pred CCeEEEEeeceEEEccCCCCCc
Q 041537 283 TGAVCSIPHGLVLWSTGVGTRP 304 (547)
Q Consensus 283 ~G~~~~i~~D~vv~a~G~~~~p 304 (547)
+|++ +.||.+|+|+|-..-|
T Consensus 150 ~g~~--i~~d~lilAtGG~S~P 169 (408)
T COG2081 150 SGET--VKCDSLILATGGKSWP 169 (408)
T ss_pred CCCE--EEccEEEEecCCcCCC
Confidence 5754 9999999999966555
No 213
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.02 E-value=1.6e-05 Score=83.39 Aligned_cols=97 Identities=18% Similarity=0.297 Sum_probs=76.1
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEE-EEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQF-WEAEAIK 106 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~-~~~~v~~ 106 (547)
.++++|||+|+.|+.+|..|++.|++|+++|+.++...+.+. ..+...+.+.++.++ +++ ....+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~l~~~g--i~~~~~~~~~~ 203 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------PEVAEELAELLEKYG--VELLLGTKVVG 203 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh----------HHHHHHHHHHHHHCC--cEEEeCCceEE
Confidence 479999999999999999999999999999999876543322 344667788888888 544 5667889
Q ss_pred EECCCCEE-----EEecCCCCCCceeeeecCEEEEccCCCcc
Q 041537 107 IDAAKNEV-----FCKSNIDKETRDFSLEYDYLIIAVGAQVN 143 (547)
Q Consensus 107 id~~~~~v-----~~~~~~~~g~~~~~i~yD~LViAtG~~~~ 143 (547)
|+...+.+ ...+ +. .+++|.+++++|.+|+
T Consensus 204 i~~~~~~~~~~~~~~~~----~~---~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 204 VEGKGNTLVVERVVGID----GE---EIKADLVIIGPGERPN 238 (415)
T ss_pred EEcccCcceeeEEEEeC----Cc---EEEeeEEEEeeccccc
Confidence 98776542 3322 33 8999999999999985
No 214
>PRK06185 hypothetical protein; Provisional
Probab=98.02 E-value=2.5e-05 Score=82.21 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=33.0
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+.++|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 457999999999999999999999999999998753
No 215
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.00 E-value=2.5e-05 Score=81.53 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4699999999999999999999999999999874
No 216
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.00 E-value=0.00024 Score=69.41 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=86.0
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-----------------------------
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS----------------------------- 242 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~----------------------------- 242 (547)
.|+|||+|++|+-+|..+++. +.+|.++++.+.+...
T Consensus 23 DVvIVGgGpAGL~aA~~la~~--------------G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKN--------------GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 899999999999999999875 5788888887543100
Q ss_pred ---------ccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CC--eEE---EEec---cCC---eEEEEeeceEEEccCC
Q 041537 243 ---------FDERISSFAEKKFQRDGIEVLTECRVVNVS--DK--EIT---MKIK---STG---AVCSIPHGLVLWSTGV 300 (547)
Q Consensus 243 ---------~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~--~v~---~~~~---~~G---~~~~i~~D~vv~a~G~ 300 (547)
...++.+.+.+.+.+.|++++.++.++++. ++ .+. +... .+| +..+++++.||-|+|.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 112445566667788999999999999874 33 232 2110 011 2345999999999995
Q ss_pred CCCcchHHHHHHhCCC--C-----Cc--------cEEeCCCCCcCCCCCEEEeCccCcc
Q 041537 301 GTRPAIKDFMEQIGQG--K-----RR--------VLATNEWLRVKECENVYALGDCATI 344 (547)
Q Consensus 301 ~~~p~~~~l~~~~~~~--~-----~g--------~i~Vd~~l~~~~~~~VfaiGD~a~~ 344 (547)
. .++...+.+..++. . .+ ...|+.+-.+ +|++|++|=.++-
T Consensus 169 ~-a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~ 224 (254)
T TIGR00292 169 D-AEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAA 224 (254)
T ss_pred C-chHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhh
Confidence 2 33443444444331 1 00 1122222222 8999999988763
No 217
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.00 E-value=7.6e-05 Score=76.50 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=39.9
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCCh
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLL 69 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l 69 (547)
....+|||||+|++||++|+.|.+.|++|+|+|.++++++....
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 56789999999999999999999999999999999998876543
No 218
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.00 E-value=4e-06 Score=77.72 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=42.5
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRN 94 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (547)
...||+||||||+||+||++|++.|++|.+||++...+...+.-..... .--+..+-..+++..+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~---~iVVq~~a~~iL~elg 80 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFN---KIVVQEEADEILDELG 80 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT------EEEETTTHHHHHHHT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccc---hhhhhhhHHHHHHhCC
Confidence 3579999999999999999999999999999999876653322111111 1123445667777777
No 219
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.99 E-value=3.2e-05 Score=82.86 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=72.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEE-EEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFW-EAEAIK 106 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~ 106 (547)
+++|+|||+|+.|+.+|..|++.|.+|+||++.+...- . . ..++...+...+++.+ ++++ ..+++.
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~-d~~~~~~l~~~L~~~g--V~i~~~~~v~~ 243 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-----G-----E-DADAAEVLEEVFARRG--MTVLKRSRAES 243 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-----C-----C-CHHHHHHHHHHHHHCC--cEEEcCCEEEE
Confidence 46899999999999999999999999999998765321 1 0 1233455677788888 4444 557888
Q ss_pred EECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 107 IDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 107 id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
++.+...+.+... +|+ ++++|.+++|+|.+|+...
T Consensus 244 v~~~~~~~~v~~~--~g~---~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 244 VERTGDGVVVTLT--DGR---TVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEEeCCEEEEEEC--CCc---EEEecEEEEeecCCcCCCC
Confidence 8654444443321 143 7999999999999987653
No 220
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.99 E-value=3.1e-05 Score=82.98 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
+++|+|||||+.|+.+|..|++.|.+|+||++.+... | .. ..++...+.+.+++.++++. ...+++.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--~---~~------d~~~~~~l~~~l~~~gV~i~-~~~~v~~i 239 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL--P---NE------DAEVSKEIAKQYKKLGVKIL-TGTKVESI 239 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--C---cc------CHHHHHHHHHHHHHCCCEEE-ECCEEEEE
Confidence 4799999999999999999999999999999876432 1 10 12344566777788885442 35688888
Q ss_pred ECCCCEE--EEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEV--FCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v--~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.++..+ .+... +|+ ..++++|.||+|+|.+|+..
T Consensus 240 ~~~~~~~~v~~~~~--~g~-~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 240 DDNGSKVTVTVSKK--DGK-AQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEeCCeEEEEEEec--CCC-eEEEEeCEEEECcCcccCCC
Confidence 7665543 33311 132 23799999999999998764
No 221
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.99 E-value=3.4e-05 Score=82.09 Aligned_cols=101 Identities=26% Similarity=0.394 Sum_probs=74.0
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
..++|+|||+|+.|+.+|..|++.|.+|+||++.+.+. |.. ..++...+.+.+++.++++. ...+++.
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~~~---------~~~~~~~l~~~l~~~gV~v~-~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL--PRE---------DRDIADNIATILRDQGVDII-LNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--CCc---------CHHHHHHHHHHHHhCCCEEE-eCCEEEE
Confidence 34699999999999999999999999999999976532 111 12344556777888884442 3567888
Q ss_pred EECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 107 IDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 107 id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
++.++..+.+... +. ++.+|.+++|+|.+|+..
T Consensus 225 i~~~~~~v~v~~~---~g---~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 225 ISHHENQVQVHSE---HA---QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEcCCEEEEEEc---CC---eEEeCEEEEeecCCcCCC
Confidence 8876655555431 22 689999999999998764
No 222
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.99 E-value=5.3e-05 Score=81.97 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=33.5
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
...||||||+|.||++||..+++.|.+|+|||+.+..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 3569999999999999999999999999999997654
No 223
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.98 E-value=3.7e-06 Score=88.93 Aligned_cols=106 Identities=13% Similarity=0.204 Sum_probs=30.9
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhh------------hhcc----------------------
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPS------------VTCG---------------------- 75 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~------------~~~g---------------------- 75 (547)
||||||||+||++||..+++.|.+|+|||+.+.+++...... ...|
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 799999999999999999999999999999988754321000 0000
Q ss_pred -----ccCccccchhHHHHHHhCCCcEEEEEEEEEEEECCCCE---EEEecCCCCCCceeeeecCEEEEccCC
Q 041537 76 -----TVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNE---VFCKSNIDKETRDFSLEYDYLIIAVGA 140 (547)
Q Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~---v~~~~~~~~g~~~~~i~yD~LViAtG~ 140 (547)
..++.....-+.+++.+.++++ +.+..+.++..+++. |.+.+.. | ..++.+|.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v-~~~t~v~~v~~~~~~i~~V~~~~~~--g--~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV-LLGTRVVDVIRDGGRITGVIVETKS--G--RKEIRAKVFIDATGD 148 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccc--c--ccccccccccccccc
Confidence 1112222222455566666555 356778888777643 3343311 2 459999999999994
No 224
>PLN02507 glutathione reductase
Probab=97.98 E-value=3.6e-05 Score=83.02 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=73.3
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|+..|.+|+||++.+... +. . ..++...+.+.+++.++++. ...+++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-----~~-----~-d~~~~~~l~~~l~~~GI~i~-~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-----RG-----F-DDEMRAVVARNLEGRGINLH-PRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-----cc-----c-CHHHHHHHHHHHHhCCCEEE-eCCEEEEE
Confidence 4789999999999999999999999999999876421 10 1 13345556677788885443 35578888
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
+.+.+.+.+... +|. ++++|.+++|+|.+|+...
T Consensus 271 ~~~~~~~~v~~~--~g~---~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 271 TKTEGGIKVITD--HGE---EFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEeCCeEEEEEC--CCc---EEEcCEEEEeecCCCCCCC
Confidence 764444444321 143 7999999999999987653
No 225
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.98 E-value=3.9e-05 Score=81.78 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=70.2
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. +. .+ .++...+.++++ .++++. ...+++.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--~~--------~d-~~~~~~l~~~~~-~gI~i~-~~~~V~~i 235 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--RH--------LD-EDISDRFTEIAK-KKWDIR-LGRNVTAV 235 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--cc--------cC-HHHHHHHHHHHh-cCCEEE-eCCEEEEE
Confidence 5799999999999999999999999999999987632 11 11 223334444443 454442 35688888
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
+.++..+.+... +|+ ++++|.+++|+|.+|+...
T Consensus 236 ~~~~~~v~v~~~--~g~---~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 236 EQDGDGVTLTLD--DGS---TVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEcCCeEEEEEc--CCC---EEEcCEEEEeeccCcCCCC
Confidence 866554443321 143 7999999999999987643
No 226
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.97 E-value=0.0001 Score=79.71 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=34.8
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
+.+||||||||..|+++|+.|++.|++|+|||+++....
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 458999999999999999999999999999999865433
No 227
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.97 E-value=3e-05 Score=81.61 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=31.8
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ 60 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~ 60 (547)
..++|+|||||++|+++|..|++.|++|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3579999999999999999999999999999986
No 228
>PRK13748 putative mercuric reductase; Provisional
Probab=97.96 E-value=3.7e-05 Score=84.48 Aligned_cols=99 Identities=16% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
+++|+|||||+.|+.+|..|++.|.+|+||++... ++.. ..++...+.+.++..++++. ...+++.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~------l~~~------d~~~~~~l~~~l~~~gI~i~-~~~~v~~i 336 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL------FFRE------DPAIGEAVTAAFRAEGIEVL-EHTQASQV 336 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc------cccc------CHHHHHHHHHHHHHCCCEEE-cCCEEEEE
Confidence 47999999999999999999999999999997531 1110 12345567777888884442 35688888
Q ss_pred ECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.++..+.+... +. ++++|.+++|+|..|+..
T Consensus 337 ~~~~~~~~v~~~---~~---~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 337 AHVDGEFVLTTG---HG---ELRADKLLVATGRAPNTR 368 (561)
T ss_pred EecCCEEEEEec---CC---eEEeCEEEEccCCCcCCC
Confidence 765555544321 22 699999999999998764
No 229
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.95 E-value=3e-05 Score=82.69 Aligned_cols=100 Identities=19% Similarity=0.279 Sum_probs=72.0
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
+++|+|||||+.|+.+|..|+..|.+||||++.+... .. + ..++...+.+.++..++++. ....++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-~~-~---------d~~~~~~~~~~l~~~gI~i~-~~~~v~~i 233 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RS-F---------DSMISETITEEYEKEGINVH-KLSKPVKV 233 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-cc-c---------CHHHHHHHHHHHHHcCCEEE-cCCEEEEE
Confidence 5799999999999999999999999999999886532 11 0 12345566777778884442 34578888
Q ss_pred ECCCC---EEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKN---EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~---~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.+.. .+.+++ +. ..+++|.+++|+|..|+..
T Consensus 234 ~~~~~~~~~v~~~~----g~--~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 234 EKTVEGKLVIHFED----GK--SIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEeCCceEEEEECC----Cc--EEEEcCEEEEeeCCCcCcc
Confidence 75422 234433 31 3799999999999998764
No 230
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.94 E-value=3.7e-05 Score=79.97 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=31.1
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ 60 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~ 60 (547)
+.+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 468999999999999999999999999999975
No 231
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.94 E-value=0.00013 Score=77.65 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=31.0
Q ss_pred CeEEEECCchHHHHHHHhcCC----CCCeEEEEcCCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDV----SSYDVQVVSPQNY 62 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~----~g~~Vtlid~~~~ 62 (547)
++|+|||||++|+++|..|++ .|++|+|||+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 479999999999999999997 7999999999643
No 232
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.94 E-value=9.3e-05 Score=80.34 Aligned_cols=96 Identities=18% Similarity=0.330 Sum_probs=73.3
Q ss_pred cccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecC--Ccc--------CC----cccHHHHHHHHHHH
Q 041537 190 NLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSG--DHI--------LN----SFDERISSFAEKKF 255 (547)
Q Consensus 190 ~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~i--------l~----~~~~~~~~~~~~~l 255 (547)
...++|||||+.|+.+|..+++. +.+|++++.. ..+ ++ ..+.++.+.+.+.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~--------------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 276 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARK--------------GIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHV 276 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999875 6788888653 111 11 13467888899999
Q ss_pred HhCCcEEEcCceEEEEeCC--eEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 256 QRDGIEVLTECRVVNVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 256 ~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
++.|++++++++|..++.+ ...+.. .+|+. +.+|.||+|+|..+
T Consensus 277 ~~~gv~i~~~~~V~~I~~~~~~~~V~~-~~g~~--i~a~~vViAtG~~~ 322 (517)
T PRK15317 277 KEYDVDIMNLQRASKLEPAAGLIEVEL-ANGAV--LKAKTVILATGARW 322 (517)
T ss_pred HHCCCEEEcCCEEEEEEecCCeEEEEE-CCCCE--EEcCEEEECCCCCc
Confidence 9999999999999999654 333332 34654 99999999999643
No 233
>PRK14727 putative mercuric reductase; Provisional
Probab=97.93 E-value=4.7e-05 Score=81.82 Aligned_cols=98 Identities=13% Similarity=0.218 Sum_probs=71.0
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEE-EEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFW-EAEAIK 106 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~ 106 (547)
+++|+|||||+.|+.+|..|++.|.+|+||++.. .. +.. ..++...+.+.+++.+ ++++ ..+++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l-----~~~------d~~~~~~l~~~L~~~G--V~i~~~~~V~~ 253 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LL-----FRE------DPLLGETLTACFEKEG--IEVLNNTQASL 253 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CC-----Ccc------hHHHHHHHHHHHHhCC--CEEEcCcEEEE
Confidence 4789999999999999999999999999998742 11 110 1234556677778888 4444 567888
Q ss_pred EECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 107 IDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 107 id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
++.+...+.+... +. ++.+|.+|+|+|..|+..
T Consensus 254 i~~~~~~~~v~~~---~g---~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 254 VEHDDNGFVLTTG---HG---ELRAEKLLISTGRHANTH 286 (479)
T ss_pred EEEeCCEEEEEEc---CC---eEEeCEEEEccCCCCCcc
Confidence 8765555544331 22 689999999999998765
No 234
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.93 E-value=0.00012 Score=74.86 Aligned_cols=129 Identities=21% Similarity=0.303 Sum_probs=79.4
Q ss_pred cCEEEEccCCC----------ccCCCCCCccccccccCCHHHHHHHHHHHHHHHHHcc-CCCCCHHHHhccccEEEEcCC
Q 041537 131 YDYLIIAVGAQ----------VNTFGTPGVLENCHFLKELEDAQKIRRTVTDCFEKAV-LPGLSEEERKRNLHFVIVGGG 199 (547)
Q Consensus 131 yD~LViAtG~~----------~~~~~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~vvVVGgG 199 (547)
-|.+|+|.=+- +..+.+-++.|++...+.-+...+-.+.+.....++. ++.+++..-.-.++++|||||
T Consensus 54 ldrvVvaACsPr~he~~Frln~y~~E~aniREqcswvH~~dAtekA~dllr~avakar~le~le~~~~~v~~svLVIGGG 133 (622)
T COG1148 54 LDRVVVAACSPRLHEPTFRLNPYYLEIANIREQCSWVHMDDATEKAKDLLRMAVAKARKLEPLEEIKVEVSKSVLVIGGG 133 (622)
T ss_pred hhheEEEecCCcccCCceeeCHHHhhhhhHhhcceeeccchHHHHHHHHHHHHHHHHhhcCChhhHHHhhccceEEEcCc
Confidence 57777776542 1122344556776655554422233333333334433 333333344566799999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-------ccHH------HHHHHHHHHHhCCcEEEcCc
Q 041537 200 PTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS-------FDER------ISSFAEKKFQRDGIEVLTEC 266 (547)
Q Consensus 200 ~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-------~~~~------~~~~~~~~l~~~GV~v~~~~ 266 (547)
.+|++.|.+|++. |.+|+||+..+.+... |+.. +.....+.-....|++++.+
T Consensus 134 vAGitAAl~La~~--------------G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tya 199 (622)
T COG1148 134 VAGITAALELADM--------------GFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYA 199 (622)
T ss_pred HHHHHHHHHHHHc--------------CCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeee
Confidence 9999999999997 7999999999877542 2211 11122233334589999999
Q ss_pred eEEEEeC
Q 041537 267 RVVNVSD 273 (547)
Q Consensus 267 ~V~~v~~ 273 (547)
+|+++++
T Consensus 200 eV~ev~G 206 (622)
T COG1148 200 EVEEVSG 206 (622)
T ss_pred eeeeecc
Confidence 9999653
No 235
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.93 E-value=0.00029 Score=68.89 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEE--eCCeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNV--SDKEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v--~~~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+-++.+.+...+++.|.-++.+-.|... ..+.|+...+.+.....+.+|..|+|+|-
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGs 315 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGS 315 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccc
Confidence 4478899999999999999999999877 45666666555566656779999999994
No 236
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.92 E-value=0.0001 Score=80.04 Aligned_cols=97 Identities=18% Similarity=0.325 Sum_probs=73.2
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecC--CccC-----------C-cccHHHHHHHHH
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSG--DHIL-----------N-SFDERISSFAEK 253 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~il-----------~-~~~~~~~~~~~~ 253 (547)
.....|+|||||+.|+.+|..+++. +.+|++++.. ..+. + ...+++.+.+.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~--------------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 275 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK--------------GLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEE 275 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHH
Confidence 3456999999999999999999875 6789988631 1111 1 234677888888
Q ss_pred HHHhCCcEEEcCceEEEEeCC--eEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 254 KFQRDGIEVLTECRVVNVSDK--EITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 254 ~l~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
.+++.||+++++++|.+++.+ ...+.. .+|+. +.+|.+|+|+|..
T Consensus 276 ~l~~~gv~i~~~~~V~~I~~~~~~~~v~~-~~g~~--i~~d~lIlAtGa~ 322 (515)
T TIGR03140 276 HIKQYPIDLMENQRAKKIETEDGLIVVTL-ESGEV--LKAKSVIVATGAR 322 (515)
T ss_pred HHHHhCCeEEcCCEEEEEEecCCeEEEEE-CCCCE--EEeCEEEECCCCC
Confidence 899999999999999998643 344432 34654 9999999999964
No 237
>PRK07538 hypothetical protein; Provisional
Probab=97.91 E-value=3.6e-05 Score=81.18 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=31.8
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
++|+|||||++||++|..|++.|++|+|||+++.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999999764
No 238
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=4.6e-05 Score=81.57 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=72.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
.+++|+|||||+.|+.+|..|++.|.+|+||++.+.+. +. . ..++...+.+.+++. +++. ...++..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~~--------~-d~~~~~~~~~~l~~~-I~i~-~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL--PL--------E-DPEVSKQAQKILSKE-FKIK-LGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--cc--------h-hHHHHHHHHHHHhhc-cEEE-cCCEEEE
Confidence 35799999999999999999999999999999987532 11 1 123344555666665 5553 4668888
Q ss_pred EECCCC-EEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 107 IDAAKN-EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 107 id~~~~-~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
++..++ .+.+.... ++ ..++++|.+++|+|.+|+..
T Consensus 235 i~~~~~~~v~~~~~~--~~-~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 235 VEKSGDEKVEELEKG--GK-TETIEADYVLVATGRRPNTD 271 (460)
T ss_pred EEEcCCceEEEEEcC--Cc-eEEEEeCEEEEccCCccCCC
Confidence 876543 45432111 21 23799999999999998765
No 239
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.90 E-value=3e-05 Score=82.63 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=68.1
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------C--cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------N--SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~l~~~ 258 (547)
...++|+|||+|+.|+++|..|++. +.+|+++++.+.+. | .++.++.+...+.+++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~--------------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 196 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA--------------GHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKL 196 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhC
Confidence 4567999999999999999999875 68999999877552 2 25667777777889999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
||++++++.+ +..+.+.+ .. ..+|.||+|+|.
T Consensus 197 gv~~~~~~~v----~~~v~~~~---~~---~~yd~viiAtGa 228 (449)
T TIGR01316 197 GVTFRMNFLV----GKTATLEE---LF---SQYDAVFIGTGA 228 (449)
T ss_pred CcEEEeCCcc----CCcCCHHH---HH---hhCCEEEEeCCC
Confidence 9999999855 22222221 22 568999999996
No 240
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.90 E-value=0.00011 Score=72.34 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=35.6
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p 67 (547)
..+++|.|||+|++||+||+.|.+ .++|||+|..++.++..
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGGha 46 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGGHA 46 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhc-ccceEEEeccccccCcc
Confidence 356799999999999999999974 57999999999887754
No 241
>PRK06996 hypothetical protein; Provisional
Probab=97.90 E-value=5.9e-05 Score=79.12 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCC----CeEEEEcCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSS----YDVQVVSPQN 61 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g----~~Vtlid~~~ 61 (547)
.+.++|+|||||++|+++|..|++.| .+|+|||+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34579999999999999999999876 5799999864
No 242
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.89 E-value=4.9e-05 Score=79.29 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
+++++|||||||++|+++|++|++.|.+|+|||++.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 356899999999999999999999999999999743
No 243
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.89 E-value=6.5e-05 Score=81.08 Aligned_cols=98 Identities=19% Similarity=0.342 Sum_probs=68.7
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEE-EEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFW-EAEAIK 106 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~ 106 (547)
+++|+|||||+.|+.+|..|++.|.+||||++. . .+.. + ..++...+.+.+++.+ ++++ ...+..
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-~l~~-~---------d~~~~~~l~~~l~~~G--V~i~~~~~v~~ 247 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-I-PLRG-F---------DRQCSEKVVEYMKEQG--TLFLEGVVPIN 247 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-c-cccc-C---------CHHHHHHHHHHHHHcC--CEEEcCCeEEE
Confidence 468999999999999999999999999999863 2 1111 1 1234456677788888 4444 345666
Q ss_pred EECCCCE--EEEecCCCCCCceeeeecCEEEEccCCCccCCC
Q 041537 107 IDAAKNE--VFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 107 id~~~~~--v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
+...+.. +.+.+ |+ ++++|.+++|+|.+|+...
T Consensus 248 v~~~~~~~~v~~~~----g~---~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 248 IEKMDDKIKVLFSD----GT---TELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEEcCCeEEEEECC----CC---EEEcCEEEEeeCCCCCccc
Confidence 6543333 33333 44 7899999999999987653
No 244
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.89 E-value=2.4e-05 Score=83.57 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=69.4
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------Cc--ccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------NS--FDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~l~~~ 258 (547)
...++|+|||||+.|+++|..|.+. +.+|+++++.+.+. |. ++.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~--------------g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK--------------GYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 4567999999999999999999864 68999999987753 22 3567778888889999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.+. ..+.+. +.. +.+|.||+|+|..
T Consensus 204 gv~~~~~~~v~----~~v~~~---~~~---~~~d~vvlAtGa~ 236 (457)
T PRK11749 204 GVEIRTNTEVG----RDITLD---ELR---AGYDAVFIGTGAG 236 (457)
T ss_pred CCEEEeCCEEC----CccCHH---HHH---hhCCEEEEccCCC
Confidence 99999998762 122221 122 7799999999964
No 245
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.88 E-value=3.9e-05 Score=85.84 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=31.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
..+|+|||||++|+++|++|++.|++|+|+|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3699999999999999999999999999999864
No 246
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.88 E-value=1e-05 Score=86.32 Aligned_cols=44 Identities=27% Similarity=0.473 Sum_probs=39.7
Q ss_pred CCCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 23 EKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 23 ~~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
+...++++|+|||||.|||+||++|...|++|+|+|.++..++.
T Consensus 10 ~~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 10 PEAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred ccccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 34566789999999999999999999999999999999988764
No 247
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.88 E-value=6.4e-05 Score=81.18 Aligned_cols=107 Identities=12% Similarity=0.185 Sum_probs=67.8
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCc-cCCC------------hhhhh--cc------------------
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFA-FTPL------------LPSVT--CG------------------ 75 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~-~~p~------------l~~~~--~g------------------ 75 (547)
+||+|||||+||+.+|..+++.|.+|+||+++.... +.+. ..++. .|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 489999999999999999999999999999864321 1110 00100 00
Q ss_pred -----------ccCccccchhHHHHHHhCCCcEEEEEEEEEEEECC-C-C--EEEEecCCCCCCceeeeecCEEEEccCC
Q 041537 76 -----------TVEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAA-K-N--EVFCKSNIDKETRDFSLEYDYLIIAVGA 140 (547)
Q Consensus 76 -----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~-~-~--~v~~~~~~~~g~~~~~i~yD~LViAtG~ 140 (547)
.++...+...++..+.+.+ ++++++++++.+..+ + + .|.+.+ |. .+.+|.+|+|||.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~p-gV~Ile~~Vv~li~e~~g~V~GV~t~~----G~---~I~Ad~VILATGt 152 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQP-NLSLFQGEVEDLILEDNDEIKGVVTQD----GL---KFRAKAVIITTGT 152 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCC-CcEEEEeEEEEEEEecCCcEEEEEECC----CC---EEECCEEEEccCc
Confidence 0111111123444455553 477888999888543 2 2 244433 43 7999999999998
Q ss_pred Ccc
Q 041537 141 QVN 143 (547)
Q Consensus 141 ~~~ 143 (547)
..+
T Consensus 153 fL~ 155 (617)
T TIGR00136 153 FLR 155 (617)
T ss_pred ccC
Confidence 753
No 248
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.87 E-value=5.5e-05 Score=81.11 Aligned_cols=102 Identities=22% Similarity=0.333 Sum_probs=69.9
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+||||++.+... | . . ..++...+.+.+++. +++. ...+++.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il--~---~-----~-d~~~~~~~~~~l~~~-v~i~-~~~~v~~i 240 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI--P---A-----A-DKDIVKVFTKRIKKQ-FNIM-LETKVTAV 240 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC--C---c-----C-CHHHHHHHHHHHhhc-eEEE-cCCEEEEE
Confidence 4799999999999999999999999999999887532 1 1 1 123334445555544 4453 45678888
Q ss_pred ECCCCEEE--EecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNEVF--CKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~v~--~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.....+. +.+.. + ...++++|.+|+|+|.+|+..
T Consensus 241 ~~~~~~~~v~~~~~~--~-~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 241 EAKEDGIYVTMEGKK--A-PAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred EEcCCEEEEEEEeCC--C-cceEEEeCEEEEeecccccCC
Confidence 75544443 33211 1 123799999999999998765
No 249
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.87 E-value=0.00047 Score=67.68 Aligned_cols=37 Identities=27% Similarity=0.274 Sum_probs=32.3
Q ss_pred CCCeEEEECCchHHHHHHHhcC----CCCCeEEEEcCCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLD----VSSYDVQVVSPQNYF 63 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~----~~g~~Vtlid~~~~~ 63 (547)
...+|||||||-.|.+.|+.|. +.|++|+|||+++.+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 4568999999999999999996 467999999998654
No 250
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.87 E-value=6.3e-05 Score=80.82 Aligned_cols=101 Identities=17% Similarity=0.275 Sum_probs=68.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|+|+++. . .+ + .. ..++...+.+.++..++++. ....+..+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-~l-~---~~------d~~~~~~l~~~L~~~gV~i~-~~~~v~~v 246 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-LL-R---GF------DQDCANKVGEHMEEHGVKFK-RQFVPIKV 246 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-cc-c---cc------CHHHHHHHHHHHHHcCCEEE-eCceEEEE
Confidence 468999999999999999999999999999863 2 11 1 11 12344566777788884442 24456666
Q ss_pred ECCCCE--EEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKNE--VFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~~--v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
...... +.+.+ +....++++|.+++|+|..|+..
T Consensus 247 ~~~~~~~~v~~~~----~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 247 EQIEAKVKVTFTD----STNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred EEcCCeEEEEEec----CCcceEEEeCEEEEEecCCcCCC
Confidence 543333 44433 21123799999999999998764
No 251
>PTZ00058 glutathione reductase; Provisional
Probab=97.86 E-value=7.7e-05 Score=81.17 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=71.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|+..|.+|+||++.+.+. +. . ..++...+.+.+++.++++. ...++..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~~--------~-d~~i~~~l~~~L~~~GV~i~-~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--RK--------F-DETIINELENDMKKNNINII-THANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--cc--------C-CHHHHHHHHHHHHHCCCEEE-eCCEEEEE
Confidence 5799999999999999999999999999999886532 11 1 12345566777888885543 35578888
Q ss_pred ECCCC-EEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKN-EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~-~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.+.. .+.+.... +. .++++|.|++|+|.+|+..
T Consensus 305 ~~~~~~~v~v~~~~--~~--~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 305 EKVKEKNLTIYLSD--GR--KYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EecCCCcEEEEECC--CC--EEEECCEEEECcCCCCCcc
Confidence 75432 23322110 21 3799999999999987654
No 252
>PRK10262 thioredoxin reductase; Provisional
Probab=97.86 E-value=9.4e-05 Score=75.20 Aligned_cols=103 Identities=16% Similarity=0.214 Sum_probs=71.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEE-EEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFW-EAEAI 105 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~ 105 (547)
..++|+|||+|+.|+.+|..|++.+.+|+++++.+.+... ..+...+.+.++..+ ++++ ...++
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~-------------~~~~~~~~~~l~~~g--V~i~~~~~v~ 209 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE-------------KILIKRLMDKVENGN--IILHTNRTLE 209 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCC-------------HHHHHHHHhhccCCC--eEEEeCCEEE
Confidence 3579999999999999999999989999999988653210 112344455566666 5544 46788
Q ss_pred EEECCCC---EEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 106 KIDAAKN---EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 106 ~id~~~~---~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
.++.+.. .|.+.+... +....++++|.||+++|.+|+..
T Consensus 210 ~v~~~~~~~~~v~~~~~~~-~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 210 EVTGDQMGVTGVRLRDTQN-SDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEEcCCccEEEEEEEEcCC-CCeEEEEECCEEEEEeCCccChh
Confidence 8876543 355543211 11234799999999999988654
No 253
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.86 E-value=7e-05 Score=85.34 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=68.1
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------Cc--ccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------NS--FDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~l~~~ 258 (547)
..+++|+|||||+.|+.+|..|++. +.+|+++++.+.+. |. ++.+....-.+.+++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~--------------G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA--------------GHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 4678999999999999999999875 68999999887542 22 3455666666788889
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.+ . +.+.. ... ..+|.||+|||..
T Consensus 603 GVe~~~gt~V-d-----i~le~---L~~--~gYDaVILATGA~ 634 (1019)
T PRK09853 603 GVKFEFGCSP-D-----LTVEQ---LKN--EGYDYVVVAIGAD 634 (1019)
T ss_pred CCEEEeCcee-E-----EEhhh---hee--ccCCEEEECcCCC
Confidence 9999999876 1 22221 222 6699999999975
No 254
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.85 E-value=9.2e-05 Score=69.71 Aligned_cols=96 Identities=27% Similarity=0.393 Sum_probs=61.4
Q ss_pred EEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCce-EEEEecCCccC--------------Cc----------------
Q 041537 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR-ITLIQSGDHIL--------------NS---------------- 242 (547)
Q Consensus 194 vVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~il--------------~~---------------- 242 (547)
+|||||++|+-+|..|.+. +.+ |+++|+.+.+. |.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~--------------g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER--------------GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT--------------T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhC--------------CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 6999999999999999876 456 88888775431 00
Q ss_pred -------------ccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCcch
Q 041537 243 -------------FDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAI 306 (547)
Q Consensus 243 -------------~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~ 306 (547)
..+++.+++.+..++.+++++++++|++++. ++..+.. .+++. +.||.||+|+|....|..
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~-~~~~~--~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTT-RDGRT--IRADRVVLATGHYSHPRI 142 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEE-TTS-E--EEEEEEEE---SSCSB--
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEE-Eecce--eeeeeEEEeeeccCCCCc
Confidence 1134567888888999999999999999954 4444443 34533 889999999997556644
No 255
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.85 E-value=0.00043 Score=76.87 Aligned_cols=36 Identities=36% Similarity=0.468 Sum_probs=32.8
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
...||||||||.|||+||..+++.|.+|+|||+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 457999999999999999999999999999998654
No 256
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.85 E-value=6.8e-05 Score=85.26 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=71.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIKI 107 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 107 (547)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. +. .++ ......+...++..++++. ....++.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-----~~----~ld-~~~~~~l~~~l~~~GV~v~-~~~~v~~i 208 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-----AK----QLD-QTAGRLLQRELEQKGLTFL-LEKDTVEI 208 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-----hh----hcC-HHHHHHHHHHHHHcCCEEE-eCCceEEE
Confidence 4689999999999999999999999999999876421 11 011 2234456677778885443 34467777
Q ss_pred ECCCC--EEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 108 DAAKN--EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 108 d~~~~--~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
..+.+ .|.+.+ |+ ++++|.+|+|+|.+|+..
T Consensus 209 ~~~~~~~~v~~~d----G~---~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 209 VGATKADRIRFKD----GS---SLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EcCCceEEEEECC----CC---EEEcCEEEECCCCCcCcH
Confidence 65543 345544 54 899999999999998653
No 257
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.84 E-value=8.5e-05 Score=84.64 Aligned_cols=98 Identities=26% Similarity=0.397 Sum_probs=70.8
Q ss_pred ccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC------Cc-c----cHHHHHHHHHHHHhCC
Q 041537 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL------NS-F----DERISSFAEKKFQRDG 259 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il------~~-~----~~~~~~~~~~~l~~~G 259 (547)
++|||||+|+.|+.+|..|.+... .++.+|++++..+++. +. + ...+.....+.+++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g 73 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG 73 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence 389999999999999999876521 1357999999988752 11 1 1122222345677899
Q ss_pred cEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 260 IEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 260 V~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
|+++.++.|..++.+..++.. .+|+. +++|.+|+|||..
T Consensus 74 I~~~~g~~V~~Id~~~~~V~~-~~G~~--i~yD~LVIATGs~ 112 (847)
T PRK14989 74 IKVLVGERAITINRQEKVIHS-SAGRT--VFYDKLIMATGSY 112 (847)
T ss_pred CEEEcCCEEEEEeCCCcEEEE-CCCcE--EECCEEEECCCCC
Confidence 999999999999876533332 34664 9999999999954
No 258
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.83 E-value=0.0002 Score=76.24 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=85.9
Q ss_pred ccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC----------------------------
Q 041537 189 RNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL---------------------------- 240 (547)
Q Consensus 189 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il---------------------------- 240 (547)
..++|+|||+|++|+-+|..|.+. +.+|+++++.+.+.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~--------------G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y 74 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE--------------GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVY 74 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc--------------CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhh
Confidence 346999999999999999998864 56777777654321
Q ss_pred -----------------Cc-------------c--cHHHHHHHHHHHHhCCcE--EEcCceEEEEeC--CeEEEEeccC-
Q 041537 241 -----------------NS-------------F--DERISSFAEKKFQRDGIE--VLTECRVVNVSD--KEITMKIKST- 283 (547)
Q Consensus 241 -----------------~~-------------~--~~~~~~~~~~~l~~~GV~--v~~~~~V~~v~~--~~v~~~~~~~- 283 (547)
|. + ..++.+++.+..++.|++ |+++++|++|+. +...+....+
T Consensus 75 ~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~ 154 (461)
T PLN02172 75 ESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG 154 (461)
T ss_pred hhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC
Confidence 10 0 145777888888888998 899999999975 3344433222
Q ss_pred CeEEEEeeceEEEccCCCCCcchHHHHHHhCCC-CCccEEeCCCCCcC---CCCCEEEeCccCc
Q 041537 284 GAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQG-KRRVLATNEWLRVK---ECENVYALGDCAT 343 (547)
Q Consensus 284 G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~-~~g~i~Vd~~l~~~---~~~~VfaiGD~a~ 343 (547)
+...+..+|.||+|+|....|....+ -|++ -.|.+.--..++.. ...+|-++|-..+
T Consensus 155 ~~~~~~~~d~VIvAtG~~~~P~~P~i---pG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 155 GFSKDEIFDAVVVCNGHYTEPNVAHI---PGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFAS 215 (461)
T ss_pred CceEEEEcCEEEEeccCCCCCcCCCC---CCcccCCceEEEecccCCccccCCCEEEEECCCcC
Confidence 23334679999999996544433222 0221 12322111222221 2357888887655
No 259
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.83 E-value=6.1e-05 Score=78.01 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=66.8
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC--Cccc---------HHHHHHHHHHHHhCCc
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL--NSFD---------ERISSFAEKKFQRDGI 260 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il--~~~~---------~~~~~~~~~~l~~~GV 260 (547)
+|||||||+.|+.+|..+.+.. .++.+|+||++.+... +.++ .++.....+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 5899999999999888775421 1368999999887642 1111 2233345566778899
Q ss_pred EEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 261 EVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 261 ~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
+++.+ .|++++.++-++.. .+|++ +.+|.+|+|+|..+
T Consensus 70 ~~~~~-~v~~id~~~~~V~~-~~g~~--~~yD~LviAtG~~~ 107 (364)
T TIGR03169 70 RFVIA-EATGIDPDRRKVLL-ANRPP--LSYDVLSLDVGSTT 107 (364)
T ss_pred EEEEE-EEEEEecccCEEEE-CCCCc--ccccEEEEccCCCC
Confidence 99875 79999764422222 23664 99999999999644
No 260
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.82 E-value=8.3e-05 Score=79.82 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=70.2
Q ss_pred CCeEEEECCchHHHHHHHhcC---CCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLD---VSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEA 104 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~---~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 104 (547)
+++|+|||||+.|+.+|..+. +.|.+|+||++.+... + . . ..++...+.+.+++.++++. ....+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--~---~-----~-d~~~~~~l~~~L~~~GI~i~-~~~~v 254 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--R---G-----F-DSTLRKELTKQLRANGINIM-TNENP 254 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--c---c-----c-CHHHHHHHHHHHHHcCCEEE-cCCEE
Confidence 578999999999999997554 4589999999886532 1 1 1 13455667777888885443 34568
Q ss_pred EEEECCC-C--EEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 105 IKIDAAK-N--EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 105 ~~id~~~-~--~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.++... . .+.+.+ +. ++++|.+++|+|.+|+..
T Consensus 255 ~~i~~~~~~~~~v~~~~----g~---~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 255 AKVTLNADGSKHVTFES----GK---TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEEEEcCCceEEEEEcC----CC---EEEcCEEEEeeCCCcCcc
Confidence 8886532 2 344433 43 799999999999998764
No 261
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.82 E-value=9.7e-05 Score=79.24 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
...||||||+|.+|++||..+++.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35799999999999999999999999999999976
No 262
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.81 E-value=7.8e-05 Score=79.78 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=68.8
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------C--cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------N--SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~l~~~ 258 (547)
..+++|+|||+|+.|+.+|..++.. +.+|+++++.+.+. | .++.++.+...+.+++.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~--------------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 204 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARA--------------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAM 204 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHC
Confidence 3678999999999999999999875 68999999887652 2 24566777777889999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
||++++++.+.. .+.+. +.. ..+|.||+|+|...
T Consensus 205 Gv~~~~~~~v~~----~~~~~----~~~--~~~D~vilAtGa~~ 238 (467)
T TIGR01318 205 GIEFHLNCEVGR----DISLD----DLL--EDYDAVFLGVGTYR 238 (467)
T ss_pred CCEEECCCEeCC----ccCHH----HHH--hcCCEEEEEeCCCC
Confidence 999999987632 11111 111 56999999999744
No 263
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.80 E-value=5.4e-05 Score=87.11 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=71.1
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------C--cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------N--SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~l~~~ 258 (547)
..+++|+|||+||.|+.+|..|++. +.+|+++++.+.+. | .++.++.+...+.+++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~--------------G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~ 369 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE--------------GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL 369 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhh
Confidence 4578999999999999999999975 78999999987653 2 24667778888889999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++|+.+ +..+++.+ ... ..+|.||+|+|..
T Consensus 370 Gv~f~~n~~v----G~dit~~~---l~~--~~yDAV~LAtGA~ 403 (944)
T PRK12779 370 GGRFVKNFVV----GKTATLED---LKA--AGFWKIFVGTGAG 403 (944)
T ss_pred cCeEEEeEEe----ccEEeHHH---hcc--ccCCEEEEeCCCC
Confidence 9999999765 22344332 322 5799999999973
No 264
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.79 E-value=0.0001 Score=77.94 Aligned_cols=93 Identities=13% Similarity=0.218 Sum_probs=69.7
Q ss_pred CeEEEECCchHHHHHHHhcCC--------------CCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDV--------------SSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRN 94 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~--------------~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (547)
++|+|||||+.|+.+|..|+. .+.+|+||++.+... +.+ ...+...+.+.+++.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--~~~---------~~~~~~~~~~~L~~~g 242 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--GSF---------DQALRKYGQRRLRRLG 242 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--ccC---------CHHHHHHHHHHHHHCC
Confidence 489999999999999998863 478999999886532 111 1234556677788888
Q ss_pred CcEEEE-EEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCcc
Q 041537 95 AEIQFW-EAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVN 143 (547)
Q Consensus 95 ~~v~~~-~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~ 143 (547)
|+++ ..++..++.+ .|.+++ |+ ++++|.+|+++|..++
T Consensus 243 --V~v~~~~~v~~v~~~--~v~~~~----g~---~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 243 --VDIRTKTAVKEVLDK--EVVLKD----GE---VIPTGLVVWSTGVGPG 281 (424)
T ss_pred --CEEEeCCeEEEEeCC--EEEECC----CC---EEEccEEEEccCCCCc
Confidence 4444 6688888754 577765 54 8999999999998775
No 265
>PLN02661 Putative thiazole synthesis
Probab=97.78 E-value=0.00016 Score=73.02 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=32.8
Q ss_pred CCeEEEECCchHHHHHHHhcCC-CCCeEEEEcCCCCCc
Q 041537 28 KKRVVLLGTGWAGISFLKDLDV-SSYDVQVVSPQNYFA 64 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~-~g~~Vtlid~~~~~~ 64 (547)
..||+|||||++|++||+.|++ .|++|+|||++...+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G 129 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG 129 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence 4699999999999999999985 489999999987653
No 266
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.78 E-value=0.0023 Score=67.66 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=37.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p 67 (547)
+.+||||||+|.+|+.+|..|++.|.+|+++|+++++++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~ 43 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGES 43 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccc
Confidence 45899999999999999999999999999999999987643
No 267
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.78 E-value=4.3e-05 Score=78.63 Aligned_cols=98 Identities=16% Similarity=0.269 Sum_probs=73.3
Q ss_pred CCeEEEECCchHHHHHHHhcCC-------------CCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDV-------------SSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRN 94 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~-------------~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (547)
.-+|+|+|||+.|+.+|-.|+. ...+|+|||+.+... |.+ +.++.....+.+++.|
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL--p~~---------~~~l~~~a~~~L~~~G 223 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL--PMF---------PPKLSKYAERALEKLG 223 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--cCC---------CHHHHHHHHHHHHHCC
Confidence 4579999999999999988851 124899999987643 222 2344566778899999
Q ss_pred CcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 95 AEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 95 ~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+++. +...|+.++++ .|++++ |+ .++++|.+|.|+|.+++..
T Consensus 224 V~v~-l~~~Vt~v~~~--~v~~~~----g~--~~I~~~tvvWaaGv~a~~~ 265 (405)
T COG1252 224 VEVL-LGTPVTEVTPD--GVTLKD----GE--EEIPADTVVWAAGVRASPL 265 (405)
T ss_pred CEEE-cCCceEEECCC--cEEEcc----CC--eeEecCEEEEcCCCcCChh
Confidence 7774 57789999876 676665 33 1599999999999987543
No 268
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.77 E-value=0.00025 Score=78.69 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=32.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCC-CCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDV-SSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~-~g~~Vtlid~~~~ 62 (547)
.+.+|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 35799999999999999999999 5999999998754
No 269
>PLN02815 L-aspartate oxidase
Probab=97.76 E-value=0.0018 Score=71.10 Aligned_cols=41 Identities=12% Similarity=0.342 Sum_probs=34.9
Q ss_pred CCCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCc
Q 041537 23 EKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFA 64 (547)
Q Consensus 23 ~~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~ 64 (547)
.......||||||+|.|||+||..+++.| +|+|||+.+...
T Consensus 24 ~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~g 64 (594)
T PLN02815 24 DESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHE 64 (594)
T ss_pred cCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCC
Confidence 44445679999999999999999999989 999999987543
No 270
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.76 E-value=7.2e-05 Score=70.23 Aligned_cols=139 Identities=26% Similarity=0.455 Sum_probs=94.5
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC---CcccH-----------HHH--H--HHHH
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL---NSFDE-----------RIS--S--FAEK 253 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il---~~~~~-----------~~~--~--~~~~ 253 (547)
+|+|||||+.|+.+|..|.+. +.+|++++..+... ..+.. ... + .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~--------------~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP--------------GAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------TSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcC--------------CCeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999953 78999998766321 00000 111 1 3344
Q ss_pred HHHhCCcEEEcCceEEEEeCCeE-------EEEeccCCeEEEEeeceEEEccCCCCC-cchH---------------HHH
Q 041537 254 KFQRDGIEVLTECRVVNVSDKEI-------TMKIKSTGAVCSIPHGLVLWSTGVGTR-PAIK---------------DFM 310 (547)
Q Consensus 254 ~l~~~GV~v~~~~~V~~v~~~~v-------~~~~~~~G~~~~i~~D~vv~a~G~~~~-p~~~---------------~l~ 310 (547)
.+...+++++.++++.+++...- .+....+++..++++|.+|+|+|..+. |.+. .+.
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL 146 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence 55778999999999999965321 222212344456999999999996533 1111 111
Q ss_pred ------------------HHhCC--CCCccEEeCCCCCcCCCCCEEEeCccCccC
Q 041537 311 ------------------EQIGQ--GKRRVLATNEWLRVKECENVYALGDCATID 345 (547)
Q Consensus 311 ------------------~~~~~--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 345 (547)
+..++ +.+|++.||+++|+ +.|+|||+|||+..+
T Consensus 147 ~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 147 ELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY 200 (201)
T ss_dssp THSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccC
Confidence 33344 57899999999999 799999999999753
No 271
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.76 E-value=0.00013 Score=77.58 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.4
Q ss_pred eEEEECCchHHHHHHHhcCCCC-CeEEEEcCCCCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSS-YDVQVVSPQNYF 63 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtlid~~~~~ 63 (547)
||||||||.||++||..+++.| .+|+|||+.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 6999999999999999999999 999999997653
No 272
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=2e-05 Score=82.09 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=36.7
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p 67 (547)
+||+|+|||+|||+||++|++.|++|||+|.+++.++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 589999999999999999999999999999999988764
No 273
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.74 E-value=7.4e-05 Score=77.04 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=67.4
Q ss_pred ccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc---------ccHHHHHHHHHHHHhCC
Q 041537 189 RNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS---------FDERISSFAEKKFQRDG 259 (547)
Q Consensus 189 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~---------~~~~~~~~~~~~l~~~G 259 (547)
..++|+|||+|+.|+++|..|.+. +.+|+++++.+.+.+. ++.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL--------------GYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC--------------CCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 456999999999999999999864 6899999998876431 23334445556777889
Q ss_pred cEEEcCceEEEEeC-----CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 260 IEVLTECRVVNVSD-----KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 260 V~v~~~~~V~~v~~-----~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
|++++++.+..+.. +..........+...+.+|.||+|+|.
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred eEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC
Confidence 99999998866532 111110000011112789999999996
No 274
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.73 E-value=0.00035 Score=69.62 Aligned_cols=93 Identities=20% Similarity=0.352 Sum_probs=68.4
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC------------------------------
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN------------------------------ 241 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~------------------------------ 241 (547)
.|+|||||++|+-+|..|++. +.+|+++++.+..-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~--------------g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK--------------GLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 689999999999999999864 678888887753210
Q ss_pred -------------------cc-cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccC
Q 041537 242 -------------------SF-DERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTG 299 (547)
Q Consensus 242 -------------------~~-~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G 299 (547)
.+ ...+.+.+.+.+++.|++++.+++++++. ++.+.+....++. ++.+|.||.|+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~a~~vv~a~G 145 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEG--TVTAKIVIGADG 145 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccE--EEEeCEEEECCC
Confidence 01 23566677788888999999999999864 4555444322233 499999999999
Q ss_pred C
Q 041537 300 V 300 (547)
Q Consensus 300 ~ 300 (547)
.
T Consensus 146 ~ 146 (295)
T TIGR02032 146 S 146 (295)
T ss_pred c
Confidence 4
No 275
>PRK06847 hypothetical protein; Provisional
Probab=97.73 E-value=0.00037 Score=72.42 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
..+.+.+.+.+++.|++++.+++|++++. +.+.+.. .+|++ +.+|.||.|.|.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vI~AdG~ 161 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTF-SDGTT--GRYDLVVGADGL 161 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEE-cCCCE--EEcCEEEECcCC
Confidence 45667777778888999999999999863 4444443 34665 999999999995
No 276
>PRK12831 putative oxidoreductase; Provisional
Probab=97.68 E-value=0.00012 Score=78.22 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=67.0
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------Cc--ccH-HHHHHHHHHHHh
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------NS--FDE-RISSFAEKKFQR 257 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~-~~~~~~~~~l~~ 257 (547)
...++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. |. ++. .+.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM--------------GYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC--------------CCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 5778999999999999999999986 68999999876542 21 222 366666788899
Q ss_pred CCcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 258 DGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 258 ~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.||++++++.+. ..+.+.+ ... ++.+|.||+|+|.
T Consensus 204 ~gv~i~~~~~v~----~~v~~~~---~~~-~~~~d~viiAtGa 238 (464)
T PRK12831 204 LGVKIETNVVVG----KTVTIDE---LLE-EEGFDAVFIGSGA 238 (464)
T ss_pred cCCEEEcCCEEC----CcCCHHH---HHh-ccCCCEEEEeCCC
Confidence 999999998662 2222221 211 2679999999996
No 277
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.67 E-value=0.0013 Score=72.23 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEE---EEeccCCeEEEEeeceEEEccCCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVS--DKEIT---MKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~---~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
...+...+.+.+++.||++++++.++++. ++.+. ..+..+|+...+.++.||+|||-.
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 35677777888888999999999999873 34432 223335665568999999999963
No 278
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.67 E-value=0.0017 Score=71.81 Aligned_cols=57 Identities=9% Similarity=0.057 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CC-eE---EEEeccCCeEEEEeeceEEEccCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVS--DK-EI---TMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~-~v---~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+..+...+.+.+++.||+++.++.++++. ++ .| ...+..+|+...+.++.||+|||-
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 45677777787888999999999999953 23 33 333334577667899999999974
No 279
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.67 E-value=8.9e-05 Score=78.87 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=25.7
Q ss_pred eEEEECCchHHHHHHHhcCCCC---CeEEEEcCCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSS---YDVQVVSPQN 61 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g---~~Vtlid~~~ 61 (547)
||||||||+||..+|..|++.+ ++|+|||+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 6999999999999999998655 9999999853
No 280
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.67 E-value=0.0017 Score=72.04 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEe---CCeE---EEEeccCCeEEEEeeceEEEccCCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVS---DKEI---TMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~---~~~v---~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
...+...+.+.+.+.||+++.++.++++. ++.+ .+.+..+|+...+.++.||+|||-.
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 44566777777778899999999999853 2333 3333345776679999999999953
No 281
>PRK07208 hypothetical protein; Provisional
Probab=97.66 E-value=3.8e-05 Score=82.68 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=37.4
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
+++++|+|||||++||+||+.|.+.|++|+|+|+++..++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 45679999999999999999999999999999999988764
No 282
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.65 E-value=0.0014 Score=72.27 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEe---CCeE---EEEeccCCeEEEEeeceEEEccCCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVS---DKEI---TMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~---~~~v---~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
...+...+.+..++.||++++++.++++. ++.| ...+..+|+...+.++.||+|||-.
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 45666777777778899999999999874 2333 2323345766678899999999953
No 283
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.65 E-value=0.00014 Score=82.48 Aligned_cols=90 Identities=20% Similarity=0.327 Sum_probs=68.1
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------C--cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------N--SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~l~~~ 258 (547)
..+++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. | .++.++.+...+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR--------------GYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999875 78999999865432 2 23566777777888999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
||++++++.+ +..+.+.+ .. ...+|.||+|+|.
T Consensus 495 gv~~~~~~~v----~~~v~~~~---l~--~~~ydavvlAtGa 527 (752)
T PRK12778 495 GVKFETDVIV----GKTITIEE---LE--EEGFKGIFIASGA 527 (752)
T ss_pred CCEEECCCEE----CCcCCHHH---Hh--hcCCCEEEEeCCC
Confidence 9999999765 22233322 22 2669999999996
No 284
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.65 E-value=0.00047 Score=74.61 Aligned_cols=138 Identities=18% Similarity=0.269 Sum_probs=87.9
Q ss_pred ccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc----------------------------
Q 041537 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS---------------------------- 242 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~---------------------------- 242 (547)
|+|+|||+|++|+-.|..+.+. +.+++++|+.+.+...
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~--------------g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE--------------GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT--------------T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHC--------------CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 5999999999999999988774 6889999988754311
Q ss_pred ------------c--cHHHHHHHHHHHHhCCc--EEEcCceEEEEeC--C-----eEEEEeccCCeEEEEeeceEEEccC
Q 041537 243 ------------F--DERISSFAEKKFQRDGI--EVLTECRVVNVSD--K-----EITMKIKSTGAVCSIPHGLVLWSTG 299 (547)
Q Consensus 243 ------------~--~~~~~~~~~~~l~~~GV--~v~~~~~V~~v~~--~-----~v~~~~~~~G~~~~i~~D~vv~a~G 299 (547)
| ..++.++++.+.+..++ .+.++++|++++. + .-.+....+|+..+..+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 1 14678888888888777 6899999999853 1 2344444456655677999999999
Q ss_pred CCCCcchHHHHHHh-CCC-CCccEEeCCCCCcC---CCCCEEEeCccCcc
Q 041537 300 VGTRPAIKDFMEQI-GQG-KRRVLATNEWLRVK---ECENVYALGDCATI 344 (547)
Q Consensus 300 ~~~~p~~~~l~~~~-~~~-~~g~i~Vd~~l~~~---~~~~VfaiGD~a~~ 344 (547)
.-..|.... ..+ |++ -+|.+.=-..++.. ...+|-++|-..+.
T Consensus 148 ~~~~P~~P~--~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg 195 (531)
T PF00743_consen 148 HFSKPNIPE--PSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSG 195 (531)
T ss_dssp SSSCESB-------CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHH
T ss_pred CcCCCCCCh--hhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhH
Confidence 876776532 011 222 23544433333321 24579999987663
No 285
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.64 E-value=1e-05 Score=83.08 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhC-CcEEEcCceEEEEeCC--e---EEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCCC---
Q 041537 246 RISSFAEKKFQRD-GIEVLTECRVVNVSDK--E---ITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQG--- 316 (547)
Q Consensus 246 ~~~~~~~~~l~~~-GV~v~~~~~V~~v~~~--~---v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~~--- 316 (547)
.+.+.+.+.|++. |++++++++|+.++.. + |.+.+..+|+..++.++.|++.+|-.+- .|+++.|+.
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL----~LLqksgi~e~~ 257 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL----PLLQKSGIPEGK 257 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH----HHHHHcCChhhc
Confidence 5666777778777 9999999999999642 2 5666666677778999999999994333 366777762
Q ss_pred CCccEEeCC-CCCcCC-------CCCEEEeCcc
Q 041537 317 KRRVLATNE-WLRVKE-------CENVYALGDC 341 (547)
Q Consensus 317 ~~g~i~Vd~-~l~~~~-------~~~VfaiGD~ 341 (547)
+=|..+|.- +|++.+ +--||-.-.+
T Consensus 258 gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 258 GYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred ccCCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 234566654 666632 2346765554
No 286
>PTZ00367 squalene epoxidase; Provisional
Probab=97.63 E-value=0.00019 Score=78.17 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=32.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
..++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45799999999999999999999999999999975
No 287
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.63 E-value=0.00022 Score=76.64 Aligned_cols=90 Identities=19% Similarity=0.290 Sum_probs=68.1
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------Cc--ccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------NS--FDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~l~~~ 258 (547)
..+++|+|||+|++|+++|..|.+. +.+|+++++.+++. |. ++..+.....+.+++.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~--------------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRA--------------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAE 206 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--------------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhC
Confidence 3557999999999999999999875 68999999988753 32 3556777777888999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.+.. .+ .. ++. ...+|.||+|+|..
T Consensus 207 Gv~~~~~~~v~~----~~--~~--~~~--~~~~d~VilAtGa~ 239 (485)
T TIGR01317 207 GIDFVTNTEIGV----DI--SA--DEL--KEQFDAVVLAGGAT 239 (485)
T ss_pred CCEEECCCEeCC----cc--CH--HHH--HhhCCEEEEccCCC
Confidence 999999988731 11 10 011 26799999999964
No 288
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.63 E-value=0.0023 Score=70.72 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEe--C-CeEE---EEeccCCeEEEEeeceEEEccCCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVS--D-KEIT---MKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~-~~v~---~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
+..+...+.+.+++.||++++++.++++. + +.|. ..+..+|+...+.++.||+|||-.
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 45677777787888999999999999973 2 3333 323345766679999999999953
No 289
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.62 E-value=0.0002 Score=79.16 Aligned_cols=107 Identities=15% Similarity=0.202 Sum_probs=69.8
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHH-HHhCCCcEEEEEEEEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNI-IKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~-~~~~~~~v~~~~~~v~~ 106 (547)
+++|+|||||+.|+.+|..|+..|.+||||++.+.+. | . .+ .++...+... ++..++++. ....|..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll--~---~-----~d-~eis~~l~~~ll~~~GV~I~-~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL--P---L-----LD-ADVAKYFERVFLKSKPVRVH-LNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc--c---c-----CC-HHHHHHHHHHHhhcCCcEEE-cCCEEEE
Confidence 4689999999999999999999999999999987633 1 1 11 2233444443 355664442 3567888
Q ss_pred EECCCC--EEEEe--cCC-C--CC-----CceeeeecCEEEEccCCCccCCC
Q 041537 107 IDAAKN--EVFCK--SNI-D--KE-----TRDFSLEYDYLIIAVGAQVNTFG 146 (547)
Q Consensus 107 id~~~~--~v~~~--~~~-~--~g-----~~~~~i~yD~LViAtG~~~~~~~ 146 (547)
|+..+. .+.+. +.. . .+ ....++++|.+++|+|.+|+...
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 876542 24432 100 0 01 01137999999999999987643
No 290
>PLN02268 probable polyamine oxidase
Probab=97.62 E-value=4.5e-05 Score=81.02 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=36.2
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p 67 (547)
++|+|||||++||+||+.|.+.|++|+|+|++++.++..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 479999999999999999999999999999999988754
No 291
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.62 E-value=0.00028 Score=72.63 Aligned_cols=102 Identities=23% Similarity=0.368 Sum_probs=76.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEE-EEEE
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEA-EAIK 106 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~ 106 (547)
..+||++|+|+.|+.+|..|...+.+||+|++++... +. +-..++...+..++++.+ ++|+.+ .+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-----~~-----lf~~~i~~~~~~y~e~kg--Vk~~~~t~~s~ 280 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-----PR-----LFGPSIGQFYEDYYENKG--VKFYLGTVVSS 280 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-----hh-----hhhHHHHHHHHHHHHhcC--eEEEEecceee
Confidence 5679999999999999999998899999999987522 11 112456777889999998 666655 4455
Q ss_pred EECCC--C--EEEEecCCCCCCceeeeecCEEEEccCCCccCCCCC
Q 041537 107 IDAAK--N--EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTP 148 (547)
Q Consensus 107 id~~~--~--~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ip 148 (547)
++... + .|.+.+ +. ++++|-||+.+|++|+.....
T Consensus 281 l~~~~~Gev~~V~l~d----g~---~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 281 LEGNSDGEVSEVKLKD----GK---TLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred cccCCCCcEEEEEecc----CC---EeccCeEEEeecccccccccc
Confidence 55433 3 344444 55 999999999999999876554
No 292
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.62 E-value=4e-05 Score=81.71 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=34.5
Q ss_pred CeEEEECCchHHHHHHHhcCCCC--CeEEEEcCCCCCccC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSS--YDVQVVSPQNYFAFT 66 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g--~~Vtlid~~~~~~~~ 66 (547)
++|+|||||+|||+||+.|++.| ++|+|+|++++.++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 47999999999999999999877 899999999988764
No 293
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.61 E-value=0.00014 Score=75.67 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=31.6
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
.+|+|||||.+|+.||..|++.|++|+|||+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3799999999999999999999999999998765
No 294
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.61 E-value=0.001 Score=74.08 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEe--CCe---EEEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVS--DKE---ITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~---v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+...+.+.+++.||+++.++.++++. ++. +.+.+..+|+...+.++.||+|||-
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 455556677788999999999999984 344 4444444677666889999999993
No 295
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.61 E-value=0.0019 Score=71.08 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEE---EEeccCCeEEEEeeceEEEccCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVS--DKEIT---MKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~---~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+..+...+.+.+++.||+++.++.++++. ++.+. ..+..+|+...+.++.||+|+|-
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 34566677777788899999999999884 34433 23333566556899999999995
No 296
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.59 E-value=0.00034 Score=75.40 Aligned_cols=34 Identities=32% Similarity=0.328 Sum_probs=30.6
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
..||||||||.|||+||..+++.|. |+||||.+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCC
Confidence 3589999999999999999998887 999999754
No 297
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.58 E-value=0.002 Score=70.62 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=32.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
..||||||||.|||+||..+++.|.+|+||||.+.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 46999999999999999999999999999999854
No 298
>PRK07236 hypothetical protein; Provisional
Probab=97.57 E-value=0.00042 Score=72.38 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=63.6
Q ss_pred ccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc------ccHHHHHHHH------------
Q 041537 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS------FDERISSFAE------------ 252 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~------~~~~~~~~~~------------ 252 (547)
.+|+|||||++|+.+|..|++. +.+|+++|+.+..++. +.+...+.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--------------G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--------------GWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--------------CCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 4899999999999999999975 6889999987654321 2222222211
Q ss_pred -------------------------------HHHHh--CCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEc
Q 041537 253 -------------------------------KKFQR--DGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWS 297 (547)
Q Consensus 253 -------------------------------~~l~~--~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a 297 (547)
+.|.+ .+++++.+++|++++. +.+++.. .+|++ +.+|.||.|
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vIgA 149 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARF-ADGRR--ETADLLVGA 149 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEE-CCCCE--EEeCEEEEC
Confidence 11111 1356889999999854 4455443 34665 999999999
Q ss_pred cCC
Q 041537 298 TGV 300 (547)
Q Consensus 298 ~G~ 300 (547)
-|.
T Consensus 150 DG~ 152 (386)
T PRK07236 150 DGG 152 (386)
T ss_pred CCC
Confidence 995
No 299
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.57 E-value=0.00038 Score=72.19 Aligned_cols=95 Identities=21% Similarity=0.267 Sum_probs=65.5
Q ss_pred EEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc---------ccHHHHH--------------
Q 041537 193 FVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS---------FDERISS-------------- 249 (547)
Q Consensus 193 vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~---------~~~~~~~-------------- 249 (547)
|+|||||+.|+.+|..|.+. .++.+|.++++.+.+.+. +++....
T Consensus 2 viIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~ 69 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYE 69 (370)
T ss_pred EEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCE
Confidence 79999999999999988853 136899999998754431 1111100
Q ss_pred --------------------HHHHH-HHhCCcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCCCc
Q 041537 250 --------------------FAEKK-FQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRP 304 (547)
Q Consensus 250 --------------------~~~~~-l~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p 304 (547)
.+.+. +++.+..++++++|.+++++++++. +|++ +.+|.||+|.|+.+.+
T Consensus 70 v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~---dg~~--~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 70 VRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLA---PGTR--INARSVIDCRGFKPSA 140 (370)
T ss_pred EECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEEC---CCCE--EEeeEEEECCCCCCCc
Confidence 11112 2333444777999999988888774 3765 9999999999976443
No 300
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.57 E-value=0.00044 Score=73.28 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=30.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
..||||||+|.|||+||..+. .|.+|+||||.+.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 469999999999999999985 6999999999654
No 301
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.56 E-value=0.0018 Score=69.86 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=33.7
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCc
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFA 64 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~ 64 (547)
+||+|||+|++|+.+|+.|++.|++|+|||+.....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 489999999999999999999999999999998765
No 302
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.56 E-value=0.0031 Score=69.79 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=32.0
Q ss_pred CCeEEEECCchHHHHHHHhcCCC--CCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVS--SYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~--g~~Vtlid~~~~ 62 (547)
..||||||||.|||+||..+++. |.+|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 46999999999999999999977 999999999863
No 303
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.55 E-value=0.00019 Score=76.58 Aligned_cols=91 Identities=16% Similarity=0.261 Sum_probs=65.3
Q ss_pred ccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC--------cc--cHHHHHHHHHHHHhC
Q 041537 189 RNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN--------SF--DERISSFAEKKFQRD 258 (547)
Q Consensus 189 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~--------~~--~~~~~~~~~~~l~~~ 258 (547)
..++|+|||+||.|+.+|..|.... .+.+|+++++.+.+.. .. ...+...+.+.++..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 4569999999999999999998631 2789999999987642 11 123445566677888
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
+|+++.|..+ +..+.+.. -. ..+|.||+|+|..
T Consensus 93 ~v~~~~nv~v----g~dvtl~~---L~---~~yDaVIlAtGa~ 125 (491)
T PLN02852 93 RVSFFGNVTL----GRDVSLSE---LR---DLYHVVVLAYGAE 125 (491)
T ss_pred CeEEEcCEEE----CccccHHH---Hh---hhCCEEEEecCCC
Confidence 9999988766 22233322 22 4699999999964
No 304
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.55 E-value=0.00027 Score=78.62 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=69.0
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------C--cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------N--SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~l~~~ 258 (547)
..+++|+|||+|+.|+..|..|+.. +.+|+++++.+.+. | .++..+.+...+.+++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~--------------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 373 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARA--------------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAM 373 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHc--------------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHC
Confidence 3578999999999999999999975 68999999998653 2 25667777777888999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.+.. .+.+.. . ...+|.|++|+|..
T Consensus 374 Gv~~~~~~~v~~----~~~~~~---l---~~~~DaV~latGa~ 406 (639)
T PRK12809 374 GIDFHLNCEIGR----DITFSD---L---TSEYDAVFIGVGTY 406 (639)
T ss_pred CeEEEcCCccCC----cCCHHH---H---HhcCCEEEEeCCCC
Confidence 999999987631 122211 1 15689999999964
No 305
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.55 E-value=0.00051 Score=74.96 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=33.4
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
....||||||+|.|||+||..+++.|.+|+||||...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 3457999999999999999999999999999999764
No 306
>PLN02546 glutathione reductase
Probab=97.55 E-value=0.00038 Score=75.80 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
..++|+|||||+.|+.+|..|...+.+|+||++.+... +. ...++...+.+.+++.++++. ...++..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-----~~------~d~~~~~~l~~~L~~~GV~i~-~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-----RG------FDEEVRDFVAEQMSLRGIEFH-TEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-----cc------cCHHHHHHHHHHHHHCCcEEE-eCCEEEE
Confidence 35799999999999999999998999999999876532 11 112344556677778884442 3556777
Q ss_pred EECC-CCEEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 107 IDAA-KNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 107 id~~-~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+... +..+.+.... + ....+|.+|+|+|.+|+..
T Consensus 319 i~~~~~g~v~v~~~~--g---~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 319 IIKSADGSLSLKTNK--G---TVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEcCCCEEEEEECC--e---EEEecCEEEEeeccccCCC
Confidence 7642 3334443210 2 1445899999999998764
No 307
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=8.8e-05 Score=77.34 Aligned_cols=106 Identities=10% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC-CccCCChhhh---hccc---------------------------
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY-FAFTPLLPSV---TCGT--------------------------- 76 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~-~~~~p~l~~~---~~g~--------------------------- 76 (547)
.++|+|||||.||+.||...++.|+++.|+.-+.. .++.|+-|.+ ..|.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999999875422 2222211111 0000
Q ss_pred -------------cCccccchhHHHHHHhCCCcEEEEEEEEEEEECCCC----EEEEecCCCCCCceeeeecCEEEEccC
Q 041537 77 -------------VEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKN----EVFCKSNIDKETRDFSLEYDYLIIAVG 139 (547)
Q Consensus 77 -------------~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~----~v~~~~~~~~g~~~~~i~yD~LViAtG 139 (547)
.+...+...++..+.... ++.++++.|+++..++. .|.+.. |. .+.++.|||+||
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~-NL~l~q~~v~dli~e~~~~v~GV~t~~----G~---~~~a~aVVlTTG 155 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQP-NLHLLQGEVEDLIVEEGQRVVGVVTAD----GP---EFHAKAVVLTTG 155 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCC-CceehHhhhHHHhhcCCCeEEEEEeCC----CC---eeecCEEEEeec
Confidence 001112223444444444 58888999999877444 234443 55 999999999999
Q ss_pred CC
Q 041537 140 AQ 141 (547)
Q Consensus 140 ~~ 141 (547)
.-
T Consensus 156 TF 157 (621)
T COG0445 156 TF 157 (621)
T ss_pred cc
Confidence 74
No 308
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.50 E-value=0.00019 Score=83.44 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=69.2
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------Cc--ccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------NS--FDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~l~~~ 258 (547)
..+++|+||||||.|+.+|..|++. +.+|+++++.+.+. |. ++.++.+...+.+++.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~--------------G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~ 493 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKY--------------GVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDI 493 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--------------CCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHC
Confidence 3568999999999999999999986 68999999987653 22 3677888888899999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.+ +..+.+.... + ...+|.||+|+|..
T Consensus 494 Gv~~~~~~~v----g~~~~~~~l~--~--~~~yDaViIATGa~ 528 (1006)
T PRK12775 494 GVKIETNKVI----GKTFTVPQLM--N--DKGFDAVFLGVGAG 528 (1006)
T ss_pred CCEEEeCCcc----CCccCHHHHh--h--ccCCCEEEEecCCC
Confidence 9999999754 2222222110 0 14589999999973
No 309
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.50 E-value=7.9e-05 Score=79.77 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=35.5
Q ss_pred CCeEEEECCchHHHHHHHhcCCC----CCeEEEEcCCCCCccC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVS----SYDVQVVSPQNYFAFT 66 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~----g~~Vtlid~~~~~~~~ 66 (547)
+++|+|||||++||+||+.|.+. |++|+|+|+++..++.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 46899999999999999999987 9999999999987664
No 310
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.48 E-value=0.00035 Score=77.86 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=67.3
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------C--cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------N--SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~l~~~ 258 (547)
...++|+|||+|+.|+.+|..|+.. +.+|+++++.+.+. | .++..+.+...+.+++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~--------------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 256 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRK--------------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAM 256 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHc
Confidence 4567999999999999999999875 68999999987652 2 24566677777888999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.+. ..+.+.. .. ..+|.||+|+|..
T Consensus 257 Gv~i~~~~~v~----~dv~~~~---~~---~~~DaVilAtGa~ 289 (652)
T PRK12814 257 GAEFRFNTVFG----RDITLEE---LQ---KEFDAVLLAVGAQ 289 (652)
T ss_pred CCEEEeCCccc----CccCHHH---HH---hhcCEEEEEcCCC
Confidence 99999988642 1111111 22 4599999999964
No 311
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.48 E-value=0.00035 Score=78.05 Aligned_cols=90 Identities=23% Similarity=0.301 Sum_probs=67.6
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------C--cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------N--SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~l~~~ 258 (547)
..+++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. | .++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~--------------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARN--------------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999875 68999999887642 2 24566767677888999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.|.. .+.+.. - ...+|.|++|+|..
T Consensus 391 Gv~~~~~~~v~~----~i~~~~---~---~~~~DavilAtGa~ 423 (654)
T PRK12769 391 GIEFELNCEVGK----DISLES---L---LEDYDAVFVGVGTY 423 (654)
T ss_pred CeEEECCCEeCC----cCCHHH---H---HhcCCEEEEeCCCC
Confidence 999999987621 111111 1 14689999999963
No 312
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.47 E-value=0.005 Score=67.87 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEe--C----CeE---EEEeccCCeEEEEeeceEEEccCCCC
Q 041537 244 DERISSFAEKKFQRDGIEVLTECRVVNVS--D----KEI---TMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 244 ~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~----~~v---~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
+..+.+.+.+.+++.||+++.++.++++. + +.+ ...+..+|+...+.++.||+|||-..
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 35677778888888999999999999973 2 333 33233456655689999999999643
No 313
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.47 E-value=0.00034 Score=67.16 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=30.5
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCC------CeEEEEcCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSS------YDVQVVSPQ 60 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g------~~Vtlid~~ 60 (547)
.+.++|+|||||..|+.+|++|.+.+ .+|||||..
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 44589999999999999999999655 789999974
No 314
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.47 E-value=8.9e-05 Score=79.44 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=34.9
Q ss_pred CCeEEEECCchHHHHHHHhcCCC------CCeEEEEcCCCCCccCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVS------SYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~------g~~Vtlid~~~~~~~~p 67 (547)
|++|+|||||++||+||+.|.+. +++|+|+|++++.++..
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 46899999999999999999864 48999999999887653
No 315
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.45 E-value=0.0033 Score=69.28 Aligned_cols=58 Identities=16% Similarity=0.028 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHh-CCcEEEcCceEEEEe--CCeEE---EEeccCCeEEEEeeceEEEccCCC
Q 041537 244 DERISSFAEKKFQR-DGIEVLTECRVVNVS--DKEIT---MKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 244 ~~~~~~~~~~~l~~-~GV~v~~~~~V~~v~--~~~v~---~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
+..+.+.+.+.+.+ .||+++.++.++++. ++.+. ..+..+|+...+.++.||+|||-.
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 34566677776665 699999999999873 44432 233335665568999999999963
No 316
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.45 E-value=0.00037 Score=69.46 Aligned_cols=105 Identities=14% Similarity=0.257 Sum_probs=77.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
-+++++|||||+.||....--.+.|.+||+||-.+.... .++ .++...+.+++.+.++.+. +..+|..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~----------~mD-~Eisk~~qr~L~kQgikF~-l~tkv~~ 277 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG----------VMD-GEISKAFQRVLQKQGIKFK-LGTKVTS 277 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc----------ccC-HHHHHHHHHHHHhcCceeE-eccEEEE
Confidence 467999999999999999888899999999996654331 112 3456667788888885553 4678888
Q ss_pred EECCCC-E--EEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 107 IDAAKN-E--VFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 107 id~~~~-~--v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
++++.. . |.+.+.. +.+..++++|.|.+++|.+|..-
T Consensus 278 a~~~~dg~v~i~ve~ak--~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 278 ATRNGDGPVEIEVENAK--TGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred eeccCCCceEEEEEecC--CCceeEEEeeEEEEEccCccccc
Confidence 887766 3 4444432 33356999999999999988553
No 317
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.44 E-value=0.0004 Score=77.79 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=38.8
Q ss_pred CCCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 23 EKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 23 ~~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
++...+++|+|||||++||++|+.|.+.|++|+|+|+++..++.
T Consensus 233 ~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 233 FEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 44456789999999999999999999999999999999887654
No 318
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.43 E-value=0.00044 Score=79.32 Aligned_cols=89 Identities=13% Similarity=0.133 Sum_probs=65.2
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------Cc--ccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------NS--FDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~l~~~ 258 (547)
...++|+||||||.|+.+|..|++. +.+|+++++.+.+. |. ++.+......+.+.+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~--------------G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~ 600 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARA--------------GHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFH 600 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhc
Confidence 4567999999999999999999875 78999999887542 22 3455566666778889
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.. .+.+.. ... ..+|.||+|+|..
T Consensus 601 GVe~~~g~~~------d~~ve~---l~~--~gYDaVIIATGA~ 632 (1012)
T TIGR03315 601 GVEFKYGCSP------DLTVAE---LKN--QGYKYVILAIGAW 632 (1012)
T ss_pred CcEEEEeccc------ceEhhh---hhc--ccccEEEECCCCC
Confidence 9999988431 122221 222 6689999999974
No 319
>PLN02576 protoporphyrinogen oxidase
Probab=97.43 E-value=0.00012 Score=79.24 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCeEEEECCchHHHHHHHhcCCC-CCeEEEEcCCCCCccC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVS-SYDVQVVSPQNYFAFT 66 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~-g~~Vtlid~~~~~~~~ 66 (547)
+++|+|||||++||+||++|.+. |++|+|+|+++..++.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 46899999999999999999988 9999999999988764
No 320
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.42 E-value=0.0012 Score=72.38 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=67.2
Q ss_pred ccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCcc-----------CCc----ccHHHHHHHHHHH
Q 041537 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHI-----------LNS----FDERISSFAEKKF 255 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i-----------l~~----~~~~~~~~~~~~l 255 (547)
..|+|||||+.|+.+|..+++. +.+|+++++...- .|. ....+.+.+.+.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~--------------g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~ 70 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRA--------------KLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQA 70 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHC--------------CCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHH
Confidence 3899999999999999999874 6789999975410 011 1246677777888
Q ss_pred HhCCcEEEcCceEEEEeCCe--EEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 256 QRDGIEVLTECRVVNVSDKE--ITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 256 ~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
++.|++++ ++.|..++.++ ..+.. .+|+ +.+|.+|+|||..+
T Consensus 71 ~~~gv~~~-~~~V~~i~~~~~~~~V~~-~~g~---~~a~~lVlATGa~p 114 (555)
T TIGR03143 71 QDFGVKFL-QAEVLDVDFDGDIKTIKT-ARGD---YKTLAVLIATGASP 114 (555)
T ss_pred HHcCCEEe-ccEEEEEEecCCEEEEEe-cCCE---EEEeEEEECCCCcc
Confidence 88999986 66788886532 33333 2343 88999999999643
No 321
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.41 E-value=0.00062 Score=74.40 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
...||||||||.|||+||..+ +.|.+|+|||+.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 357999999999999999999 89999999999653
No 322
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.40 E-value=0.00081 Score=70.16 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=61.5
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCccc--HH-----------------HHHHHH
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFD--ER-----------------ISSFAE 252 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~--~~-----------------~~~~~~ 252 (547)
+|+|||||..|+|+|..|++. +.+|+|+++.+.++.... .. ....+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~--------------G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~ 67 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA--------------GVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLK 67 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHH
Confidence 799999999999999999975 789999998776543210 00 112344
Q ss_pred HHHHhCCcEEEcCceEEEEeCCeEEEEec-------------------cCCeEEEEe-eceEEEccCCCCCc
Q 041537 253 KKFQRDGIEVLTECRVVNVSDKEITMKIK-------------------STGAVCSIP-HGLVLWSTGVGTRP 304 (547)
Q Consensus 253 ~~l~~~GV~v~~~~~V~~v~~~~v~~~~~-------------------~~G~~~~i~-~D~vv~a~G~~~~p 304 (547)
+.++..|..+...+....+..++....+. ..++...+. +|.||+|||..+..
T Consensus 68 ~ei~~lg~l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG~~~s~ 139 (433)
T TIGR00137 68 TEMRQLSSLIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATGPLTSP 139 (433)
T ss_pred HHHhhcCeeeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCCCCccH
Confidence 66677776666555555544332211110 013333344 57999999964444
No 323
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.39 E-value=0.0006 Score=73.18 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=67.0
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC---------cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN---------SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------~~~~~~~~~~~~~l~~~ 258 (547)
...++|+|||+|+.|+.+|..|.+. +.+|+++++.+.+.. .++..+.....+.+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~--------------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA--------------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAE 206 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC--------------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhC
Confidence 4567999999999999999999875 689999999876532 13556666667788999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.+.. .+... .. ...+|.||+|+|..
T Consensus 207 gv~~~~~~~v~~----~~~~~----~~--~~~~d~vvlAtGa~ 239 (471)
T PRK12810 207 GIEFRTNVEVGK----DITAE----EL--LAEYDAVFLGTGAY 239 (471)
T ss_pred CcEEEeCCEECC----cCCHH----HH--HhhCCEEEEecCCC
Confidence 999999987632 11110 11 25799999999964
No 324
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.39 E-value=0.00049 Score=68.69 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=69.5
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC-------ccCCChhh---------------------------
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF-------AFTPLLPS--------------------------- 71 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~-------~~~p~l~~--------------------------- 71 (547)
....||+|||||.+|-+.|+.|++.|.+|+||||.=.- ..+|.-+.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~ 122 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD 122 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence 34578999999999999999999999999999984110 00110000
Q ss_pred ---------------hhccc-cCccccchhHHHHHHhCCCcEEEEEEEEEEEECCCCEEE---EecCCCCCCceeeeecC
Q 041537 72 ---------------VTCGT-VEARSIAEPVRNIIKKRNAEIQFWEAEAIKIDAAKNEVF---CKSNIDKETRDFSLEYD 132 (547)
Q Consensus 72 ---------------~~~g~-~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~---~~~~~~~g~~~~~i~yD 132 (547)
...|. .....+...+|+...... ++++.+++|.++-.++..|. .++. +.++.+..+-
T Consensus 123 gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slp-NV~~eeGtV~sLlee~gvvkGV~yk~k---~gee~~~~Ap 198 (509)
T KOG1298|consen 123 GKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLP-NVRLEEGTVKSLLEEEGVVKGVTYKNK---EGEEVEAFAP 198 (509)
T ss_pred CceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCC-CeEEeeeeHHHHHhccCeEEeEEEecC---CCceEEEecc
Confidence 00000 001122334444443333 69999999999877777543 3332 2224567777
Q ss_pred EEEEccCCCc
Q 041537 133 YLIIAVGAQV 142 (547)
Q Consensus 133 ~LViAtG~~~ 142 (547)
--|+|-|+-.
T Consensus 199 LTvVCDGcfS 208 (509)
T KOG1298|consen 199 LTVVCDGCFS 208 (509)
T ss_pred eEEEecchhH
Confidence 7888888744
No 325
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.38 E-value=0.00013 Score=78.76 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=35.8
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p 67 (547)
+||||||||++||+||..|++.|++|+|+|+++..++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 589999999999999999999999999999998876643
No 326
>PLN02529 lysine-specific histone demethylase 1
Probab=97.38 E-value=0.00018 Score=80.09 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=38.9
Q ss_pred CCCCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 23 EKEREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 23 ~~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
++....++|+|||||++||+||+.|++.|++|+|+|+++..++.
T Consensus 155 ~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 155 PEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 44456789999999999999999999999999999999887664
No 327
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.36 E-value=0.00014 Score=75.26 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=32.5
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+++|+|||||++|+.+|..|++.|++|+|||+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 46899999999999999999999999999998764
No 328
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.35 E-value=0.00018 Score=74.23 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=34.5
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
+.+|+|||||++|+++|..|++.|.+|+|+|+++..++
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 35899999999999999999988999999999877665
No 329
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.31 E-value=0.00023 Score=78.34 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=33.3
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
.++.+|+|||||++||++|..|++.|++|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456799999999999999999999999999999975
No 330
>PRK07121 hypothetical protein; Validated
Probab=97.30 E-value=0.00031 Score=75.81 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=35.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
...||||||+|.||++||..+++.|.+|+||||.+.....
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 4679999999999999999999999999999998765443
No 331
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0026 Score=63.72 Aligned_cols=94 Identities=20% Similarity=0.385 Sum_probs=68.2
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCce-EEEEecCC---------------ccCC-cccHHHHHHHHHH
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR-ITLIQSGD---------------HILN-SFDERISSFAEKK 254 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~---------------~il~-~~~~~~~~~~~~~ 254 (547)
.|+|||+||.|+-.|..+.+. +.+ +.+++... .+-. ...+++.+...+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~--------------~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARA--------------GLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHc--------------CCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 799999999999999999886 344 44444321 1111 2457888888888
Q ss_pred HHhCCcEEEcCceEEEEeCCe--EEEEeccCCeEEEEeeceEEEccCCCCCc
Q 041537 255 FQRDGIEVLTECRVVNVSDKE--ITMKIKSTGAVCSIPHGLVLWSTGVGTRP 304 (547)
Q Consensus 255 l~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vv~a~G~~~~p 304 (547)
.++.|+++.. ..|.+++... ..+.. ++|+ +.|+.||+|+|....+
T Consensus 71 a~~~~~~~~~-~~v~~v~~~~~~F~v~t-~~~~---~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 71 AEKFGVEIVE-DEVEKVELEGGPFKVKT-DKGT---YEAKAVIIATGAGARK 117 (305)
T ss_pred HhhcCeEEEE-EEEEEEeecCceEEEEE-CCCe---EEEeEEEECcCCcccC
Confidence 8899999988 7788887654 34433 3354 9999999999986543
No 332
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.29 E-value=0.0091 Score=65.67 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHh-CCcEEEcCceEEEEe--CCeEE---EEeccCCeEEEEeeceEEEccCC
Q 041537 244 DERISSFAEKKFQR-DGIEVLTECRVVNVS--DKEIT---MKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 244 ~~~~~~~~~~~l~~-~GV~v~~~~~V~~v~--~~~v~---~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
...+...+.+.+.+ .+|+++.++.++++. ++.+. ..+..+|+...+.++.||+|+|-
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 34566666666655 489999999999874 34443 23334576556999999999985
No 333
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00097 Score=74.40 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=84.7
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHccCCCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEE
Q 041537 152 ENCHFLKELEDAQKIRRTVTDCFEKAVLPGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRIT 231 (547)
Q Consensus 152 e~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~ 231 (547)
+....+++++-+. +...|+..-.. ..++..+.+++|.|||.||.|+-+|..|.+. +..|+
T Consensus 1753 e~pv~iksie~ai-----id~af~egwm~-p~pp~~rtg~~vaiigsgpaglaaadqlnk~--------------gh~v~ 1812 (2142)
T KOG0399|consen 1753 EPPVGIKSIECAI-----IDKAFEEGWMK-PCPPAFRTGKRVAIIGSGPAGLAAADQLNKA--------------GHTVT 1812 (2142)
T ss_pred cCCccccchhhHH-----HHHHHHhcCCc-cCCcccccCcEEEEEccCchhhhHHHHHhhc--------------CcEEE
Confidence 4445566665433 23344444333 3344567899999999999999999999876 78999
Q ss_pred EEecCCccC-------C--cccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 232 LIQSGDHIL-------N--SFDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 232 lv~~~~~il-------~--~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
+++|.+++. | .+|..+.+.-.+.|.+.||++++|+.|-. .+.+. +-. -+.|.||+|+|..
T Consensus 1813 vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk----~vs~d----~l~--~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1813 VYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK----HVSLD----ELK--KENDAIVLATGST 1881 (2142)
T ss_pred EEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc----cccHH----HHh--hccCeEEEEeCCC
Confidence 999999874 3 26778888888999999999999987732 12211 111 3467888888863
No 334
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.27 E-value=0.0036 Score=64.39 Aligned_cols=92 Identities=22% Similarity=0.381 Sum_probs=61.7
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEe-cCCccC------------------------------
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQ-SGDHIL------------------------------ 240 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~-~~~~il------------------------------ 240 (547)
.|+|||||..|+|.|..+++. +.+|.|+. ..+.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~--------------G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM--------------GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 389999999999999999987 67888883 222221
Q ss_pred ----------------C-------ccc-HHHHHHHHHHHHh-CCcEEEcCceEEEE--eCCeEEEEeccCCeEEEEeece
Q 041537 241 ----------------N-------SFD-ERISSFAEKKFQR-DGIEVLTECRVVNV--SDKEITMKIKSTGAVCSIPHGL 293 (547)
Q Consensus 241 ----------------~-------~~~-~~~~~~~~~~l~~-~GV~v~~~~~V~~v--~~~~v~~~~~~~G~~~~i~~D~ 293 (547)
| ..| ....+.+.+.|++ .+|+++ ..+|+++ +++.|.-..+.+|+. +.+|.
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~--~~a~~ 143 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEE--IEADA 143 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEE--EEECE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCE--EecCE
Confidence 0 011 1334556666776 588886 5678888 456666666567876 99999
Q ss_pred EEEccCC
Q 041537 294 VLWSTGV 300 (547)
Q Consensus 294 vv~a~G~ 300 (547)
||.|||.
T Consensus 144 vVlaTGt 150 (392)
T PF01134_consen 144 VVLATGT 150 (392)
T ss_dssp EEE-TTT
T ss_pred EEEeccc
Confidence 9999996
No 335
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.26 E-value=0.0038 Score=72.95 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=68.8
Q ss_pred ccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcc-----------cHHHHHHHHHHHHh
Q 041537 189 RNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSF-----------DERISSFAEKKFQR 257 (547)
Q Consensus 189 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~-----------~~~~~~~~~~~l~~ 257 (547)
....|+|||||+.|+..|..+.+. +.+|+|++..+.+...+ ..++.....+.+++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~--------------G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~ 227 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA--------------GARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTA 227 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhc
Confidence 356899999999999999999874 78999999876653211 12333445556666
Q ss_pred C-CcEEEcCceEEEEeCCe-EEEEe-cc-------C----CeEEEEeeceEEEccCCCCC
Q 041537 258 D-GIEVLTECRVVNVSDKE-ITMKI-KS-------T----GAVCSIPHGLVLWSTGVGTR 303 (547)
Q Consensus 258 ~-GV~v~~~~~V~~v~~~~-v~~~~-~~-------~----G~~~~i~~D~vv~a~G~~~~ 303 (547)
. +|++++++.|..+.++. +.... .. . +...++.+|.||+|||....
T Consensus 228 ~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 228 MPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred CCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc
Confidence 6 59999999998886643 21110 00 0 11124899999999997543
No 336
>PRK06834 hypothetical protein; Provisional
Probab=97.26 E-value=0.0032 Score=67.79 Aligned_cols=52 Identities=12% Similarity=0.209 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+++.||+++.++++++++. +++.+.. .+|++ +.+|.||.|.|.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~-~~g~~--i~a~~vVgADG~ 154 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVEL-SDGRT--LRAQYLVGCDGG 154 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCC
Confidence 3445566667788999999999999854 4555543 34654 999999999995
No 337
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.24 E-value=0.0014 Score=70.53 Aligned_cols=75 Identities=23% Similarity=0.250 Sum_probs=58.0
Q ss_pred cccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEE
Q 041537 190 NLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVV 269 (547)
Q Consensus 190 ~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~ 269 (547)
.++++|+|+|.+|+++|..|... +.+|+++++.+. .......+.|++.||+++++..+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~--------------G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~ 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLEL--------------GARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--------------CCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc
Confidence 45899999999999999888764 789999987653 234455677889999999886542
Q ss_pred EEeCCeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 270 NVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 270 ~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
. ...+|+||.++|+.+
T Consensus 75 ----------~-------~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 75 ----------L-------PEDTDLVVTSPGWRP 90 (480)
T ss_pred ----------c-------cCCCCEEEECCCcCC
Confidence 0 156899999999754
No 338
>PLN02568 polyamine oxidase
Probab=97.23 E-value=0.00029 Score=76.43 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=35.4
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCC-----CeEEEEcCCCCCccC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSS-----YDVQVVSPQNYFAFT 66 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g-----~~Vtlid~~~~~~~~ 66 (547)
+.++|+|||||++||+||..|.+.| ++|+|+|++++.++.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 3578999999999999999999766 899999999987664
No 339
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.0083 Score=55.85 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=82.0
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-------ccH-------------------
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS-------FDE------------------- 245 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-------~~~------------------- 245 (547)
.|+|||+||+|+-+|..|++. +.+|.++++.-.+... |++
T Consensus 32 DViIVGaGPsGLtAAyyLAk~--------------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKA--------------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhC--------------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 899999999999999999975 7899999987554321 111
Q ss_pred ------------HHHHHHHHHHHhCCcEEEcCceEEEE--eCC-eEE---EEec---cCC---eEEEEeeceEEEccCCC
Q 041537 246 ------------RISSFAEKKFQRDGIEVLTECRVVNV--SDK-EIT---MKIK---STG---AVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 246 ------------~~~~~~~~~l~~~GV~v~~~~~V~~v--~~~-~v~---~~~~---~~G---~~~~i~~D~vv~a~G~~ 301 (547)
.+...+....-+.|.++...+.|+.+ .++ +|. +.-+ ..+ +...++++.||-|||-
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH- 176 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH- 176 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC-
Confidence 11222222234567888888888876 334 332 2110 011 1235899999999994
Q ss_pred CCcchHHHHHHhC---C--C-------CCc-cEEeCCCCCcCCCCCEEEeCccCcc
Q 041537 302 TRPAIKDFMEQIG---Q--G-------KRR-VLATNEWLRVKECENVYALGDCATI 344 (547)
Q Consensus 302 ~~p~~~~l~~~~~---~--~-------~~g-~i~Vd~~l~~~~~~~VfaiGD~a~~ 344 (547)
..+..+.+.+..+ + . +++ .+.|+.+-++ +|++|++|=.++.
T Consensus 177 da~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~a 230 (262)
T COG1635 177 DAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNA 230 (262)
T ss_pred chHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHh
Confidence 2233333343332 1 1 111 2344444443 8999999987663
No 340
>PRK08244 hypothetical protein; Provisional
Probab=97.21 E-value=0.004 Score=67.33 Aligned_cols=54 Identities=15% Similarity=0.319 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEec-cCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIK-STGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~-~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+++.|++++.++++++++ ++++.+... .+|+ .++.+|.||-|.|.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~a~~vVgADG~ 157 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGL-RTLTSSYVVGADGA 157 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCcc-EEEEeCEEEECCCC
Confidence 345566666778899999999999985 344544321 2342 35999999999995
No 341
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.19 E-value=0.00032 Score=70.98 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=68.9
Q ss_pred CCeEEEECCchHHHHHHHhcC--------------CCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhC
Q 041537 28 KKRVVLLGTGWAGISFLKDLD--------------VSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKR 93 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~--------------~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~ 93 (547)
.-++|||||||.|+.+|-+|+ ....+|||||..+... +.+ ...+.....+++.+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-----~mF------dkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-----NMF------DKRLVEYAENQFVRD 286 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-----HHH------HHHHHHHHHHHhhhc
Confidence 357999999999999999886 2457899999886432 111 133455566777777
Q ss_pred CCcEEEEEEEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccC
Q 041537 94 NAEIQFWEAEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNT 144 (547)
Q Consensus 94 ~~~v~~~~~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~ 144 (547)
+++++ ....|..++.+ .+.+.... |+ ..+++|--||.|||..++.
T Consensus 287 ~I~~~-~~t~Vk~V~~~--~I~~~~~~--g~-~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 287 GIDLD-TGTMVKKVTEK--TIHAKTKD--GE-IEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred cceee-cccEEEeecCc--EEEEEcCC--Cc-eeeecceEEEecCCCCCch
Confidence 74443 34467777654 55554432 43 3599999999999988754
No 342
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.17 E-value=0.0018 Score=68.45 Aligned_cols=197 Identities=19% Similarity=0.182 Sum_probs=118.2
Q ss_pred CCeEEEECCch-HHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhh-ccccCccccchhHHHHHHhCCCcEEEEEEEEE
Q 041537 28 KKRVVLLGTGW-AGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVT-CGTVEARSIAEPVRNIIKKRNAEIQFWEAEAI 105 (547)
Q Consensus 28 ~~~VvIIGgG~-aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~-~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 105 (547)
..+.+++|.++ .++..|.++..-+- -.+..-+-+...|...... .|. ....++.+.+... .--+.++
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~C~~--~C~~~cp~~~~IP~~~~lv~~g~-----~~~a~~~i~~tn~--~p~~~gR-- 73 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLDCGD--PCITGCPVHNDIPEPIGLVREGV-----DHEAIKLIHKTNN--LPAITGR-- 73 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHcCCC--ccccCCcCCCcCCCHHHHHhcCC-----cHHHHHHHHHhCC--CccccCc--
Confidence 57899999999 88888877765443 3333333333344433332 221 2233344433332 1112222
Q ss_pred EEECCCC-----EEEEecCCCCCCceeeeecCEEEEccCCCccCC-CCCCccccccccCCHHHHHHHHHHHHHHHHHccC
Q 041537 106 KIDAAKN-----EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF-GTPGVLENCHFLKELEDAQKIRRTVTDCFEKAVL 179 (547)
Q Consensus 106 ~id~~~~-----~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~-~ipG~~e~~~~~~~~~~a~~l~~~l~~~~~~~~~ 179 (547)
+.|..+ .+.... + ..+.|+.|..+.|...... .+|+...
T Consensus 74 -vcp~~~~ceg~cv~~~~----~---~~v~i~~le~~i~d~~~~~g~i~~~~~--------------------------- 118 (457)
T COG0493 74 -VCPLGNLCEGACVLGIE----E---LPVNIGALERAIGDKADREGWIPGELP--------------------------- 118 (457)
T ss_pred -cCCCCCceeeeeeeccC----C---CchhhhhHHHHHhhHHHHhCCCCCCCC---------------------------
Confidence 333321 111100 1 2667777777776543221 2333211
Q ss_pred CCCCHHHHhccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------C--cccHHHHHH
Q 041537 180 PGLSEEERKRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------N--SFDERISSF 250 (547)
Q Consensus 180 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~ 250 (547)
....+++|.|||+||.|..+|..|+.. ++.|+++++.+.+. | .++.++.+.
T Consensus 119 ------~~~tg~~VaviGaGPAGl~~a~~L~~~--------------G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~ 178 (457)
T COG0493 119 ------GSRTGKKVAVIGAGPAGLAAADDLSRA--------------GHDVTVFERVALDGGLLLYGIPDFKLPKDILDR 178 (457)
T ss_pred ------CCCCCCEEEEECCCchHhhhHHHHHhC--------------CCeEEEeCCcCCCceeEEecCchhhccchHHHH
Confidence 113457999999999999999999986 78999999988754 2 256788899
Q ss_pred HHHHHHhCCcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 251 AEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 251 ~~~~l~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
..+.|++.||+|++++++-. .+++.. ..-++|.|++++|.
T Consensus 179 ~i~~l~~~Gv~~~~~~~vG~----~it~~~------L~~e~Dav~l~~G~ 218 (457)
T COG0493 179 RLELLERSGVEFKLNVRVGR----DITLEE------LLKEYDAVFLATGA 218 (457)
T ss_pred HHHHHHHcCeEEEEcceECC----cCCHHH------HHHhhCEEEEeccc
Confidence 99999999999999988731 222221 11345999999996
No 343
>PLN02463 lycopene beta cyclase
Probab=97.17 E-value=0.0036 Score=66.44 Aligned_cols=94 Identities=21% Similarity=0.378 Sum_probs=64.5
Q ss_pred ccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-Cc---------------------------
Q 041537 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-NS--------------------------- 242 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-~~--------------------------- 242 (547)
..|+|||||++|.-+|..|++. +.+|.++++.+... |.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~--------------Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v 94 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEA--------------GLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVV 94 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHC--------------CCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEE
Confidence 4899999999999999999864 57777777654211 00
Q ss_pred ----------------c-cHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 243 ----------------F-DERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 243 ----------------~-~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
+ ...+.+.+.+.+.+.||+++ ..+|++++. +.+.+.. ++|+. +.+|.||.|+|..+
T Consensus 95 ~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~-~dG~~--i~A~lVI~AdG~~s 169 (447)
T PLN02463 95 YIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVC-DDGVK--IQASLVLDATGFSR 169 (447)
T ss_pred EEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEE-CCCCE--EEcCEEEECcCCCc
Confidence 0 12334556666677899997 568888853 3333332 34654 99999999999743
No 344
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.14 E-value=0.00034 Score=75.55 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTG 299 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G 299 (547)
..+.+.+.+.++++|++|++++.|++|. ++++......+|++ +.+|.||+++|
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~--~~ad~vV~a~~ 283 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEK--IYAKRIVSNAT 283 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCE--EEcCEEEECCC
Confidence 4678888899999999999999999984 34343333344765 89999999988
No 345
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.13 E-value=0.00058 Score=69.23 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=34.1
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
+.+|||||||.+|+++|..|.+.|++|+|+|+......
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 57899999999999999999999999999999765443
No 346
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0093 Score=63.81 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=58.6
Q ss_pred hhCCCCC-CCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEE
Q 041537 219 NLYPTVK-DLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVL 295 (547)
Q Consensus 219 ~~~~~~~-~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv 295 (547)
+.||-+. +++.-.|..+++..+. |..+...+....++.|+.|+.++.|+++.- ++..-+.+..|. |+|..+|
T Consensus 162 ~~~pLLn~d~v~g~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~---iet~~~V 236 (856)
T KOG2844|consen 162 ELFPLLNVDDVYGGLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS---IETECVV 236 (856)
T ss_pred HhCcccchhHheeeeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc---eecceEE
Confidence 4455554 4677788888886553 246778888888999999999999999842 332222223476 9999999
Q ss_pred EccCCCCCc
Q 041537 296 WSTGVGTRP 304 (547)
Q Consensus 296 ~a~G~~~~p 304 (547)
-|+|++++.
T Consensus 237 NaaGvWAr~ 245 (856)
T KOG2844|consen 237 NAAGVWARE 245 (856)
T ss_pred echhHHHHH
Confidence 999987754
No 347
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.09 E-value=0.00049 Score=74.46 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCc
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFA 64 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~ 64 (547)
+.+.||+|||||+.|+++|+.|++.|++|+|||+++...
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~ 42 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ 42 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 345899999999999999999999999999999996543
No 348
>PRK06184 hypothetical protein; Provisional
Probab=97.09 E-value=0.0056 Score=66.35 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEE--eccCCeEEEEeeceEEEccCC
Q 041537 247 ISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMK--IKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 247 ~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~--~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+.+.+.+.+.+.|++++.++++++++. +.+++. ...+++ ++.+|.||-|.|.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~--~i~a~~vVgADG~ 166 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEE--TVRARYLVGADGG 166 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeE--EEEeCEEEECCCC
Confidence 455667777888999999999999864 444433 212333 4999999999995
No 349
>PLN02661 Putative thiazole synthesis
Probab=97.08 E-value=0.021 Score=57.96 Aligned_cols=137 Identities=17% Similarity=0.163 Sum_probs=78.3
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC---------------------------ccc
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN---------------------------SFD 244 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------------------------~~~ 244 (547)
.|+|||+|+.|+-+|..+++. ++.+|+++++...+.. .++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~-------------~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKN-------------PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHc-------------CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 899999999999999999853 2578888887654311 011
Q ss_pred -----------HHHHHHHHH-HHHhCCcEEEcCceEEEEe--CCe---EEEE------eccCC---eEEEEeeceEEEcc
Q 041537 245 -----------ERISSFAEK-KFQRDGIEVLTECRVVNVS--DKE---ITMK------IKSTG---AVCSIPHGLVLWST 298 (547)
Q Consensus 245 -----------~~~~~~~~~-~l~~~GV~v~~~~~V~~v~--~~~---v~~~------~~~~G---~~~~i~~D~vv~a~ 298 (547)
..+...+.+ .+++.||+++.++.+.++. ++. +.+. +..++ +...+.++.||.||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 011112333 3345789999999988874 333 2221 10111 22358999999999
Q ss_pred CCCCCcchHHHHHH---hCCCC----C-------c-cEEeCCCCCcCCCCCEEEeCccCcc
Q 041537 299 GVGTRPAIKDFMEQ---IGQGK----R-------R-VLATNEWLRVKECENVYALGDCATI 344 (547)
Q Consensus 299 G~~~~p~~~~l~~~---~~~~~----~-------g-~i~Vd~~l~~~~~~~VfaiGD~a~~ 344 (547)
|-.. |........ +++.. - + ...|+.+-++ +|++|+.|=.++-
T Consensus 241 Gh~g-~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~ 298 (357)
T PLN02661 241 GHDG-PFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAE 298 (357)
T ss_pred CCCC-cchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhh
Confidence 9532 222222211 12100 0 0 1223333333 8999999988763
No 350
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.06 E-value=0.00079 Score=72.50 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=59.4
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEAIK 106 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~ 106 (547)
..++|+|||+|.+|+++|..|++.|++|+++|+++. .....+.+.++..+ +++..+.-
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~------------------~~~~~~~~~l~~~g--v~~~~~~~-- 72 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD------------------ERHRALAAILEALG--ATVRLGPG-- 72 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------------------hhhHHHHHHHHHcC--CEEEECCC--
Confidence 456899999999999999999999999999997642 01123344456666 44432210
Q ss_pred EECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccCCCCCCccc
Q 041537 107 IDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTFGTPGVLE 152 (547)
Q Consensus 107 id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~~ipG~~e 152 (547)
+. . ...+|.+|+++|..|+.+-+....+
T Consensus 73 -------~~--~---------~~~~D~Vv~s~Gi~~~~~~~~~a~~ 100 (480)
T PRK01438 73 -------PT--L---------PEDTDLVVTSPGWRPDAPLLAAAAD 100 (480)
T ss_pred -------cc--c---------cCCCCEEEECCCcCCCCHHHHHHHH
Confidence 00 0 3568999999999987765544443
No 351
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.06 E-value=0.0054 Score=64.17 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=35.8
Q ss_pred HHHHHHHHHhC-CcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 248 SSFAEKKFQRD-GIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 248 ~~~~~~~l~~~-GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+. +|+++.++.+++++. +.+.+.. .+|+. +.+|.||.|.|.
T Consensus 112 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vV~AdG~ 164 (396)
T PRK08163 112 HLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFD-QQGNR--WTGDALIGCDGV 164 (396)
T ss_pred HHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEE-cCCCE--EecCEEEECCCc
Confidence 34445555555 499999999999864 4455543 34654 999999999995
No 352
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.03 E-value=0.0064 Score=59.36 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=33.6
Q ss_pred CCCCeEEEECCchHHHHHHHhcC--CCCCeEEEEcCCCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLD--VSSYDVQVVSPQNYF 63 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~--~~g~~Vtlid~~~~~ 63 (547)
...+|+||||||..|++.|++|. +++.+|.|+|++..+
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 45789999999999999999886 679999999998765
No 353
>PLN02676 polyamine oxidase
Probab=97.02 E-value=0.0006 Score=73.29 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=36.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCC-eEEEEcCCCCCccCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSY-DVQVVSPQNYFAFTP 67 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~-~Vtlid~~~~~~~~p 67 (547)
.+++|+|||||++||+||++|++.|. +|+|+|+++..++..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 46789999999999999999999998 699999999887643
No 354
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.00 E-value=0.0065 Score=64.01 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhC-CcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 247 ISSFAEKKFQRD-GIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 247 ~~~~~~~~l~~~-GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+.+.+.+.+.+. ||+++.++++++++. +.+.+....+++..++.||+||-|.|.
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~ 179 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGA 179 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCC
Confidence 344444555554 799999999999854 444443322233235999999999995
No 355
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.00 E-value=0.007 Score=63.49 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
..+.+.+.+.+.+.||+++.+++|++++. +.+.+.. .+|+. +.+|.||.|.|.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vI~AdG~ 165 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTL-SDGSV--LEARLLVAADGA 165 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEE-CCCCE--EEeCEEEEcCCC
Confidence 35566777777888999999999999853 4455543 34654 999999999995
No 356
>PLN02697 lycopene epsilon cyclase
Probab=96.99 E-value=0.0064 Score=65.71 Aligned_cols=95 Identities=21% Similarity=0.357 Sum_probs=63.0
Q ss_pred ccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc----------------------------
Q 041537 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS---------------------------- 242 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~---------------------------- 242 (547)
..|+|||||+.|+-+|..+++. +.+|.++++...+.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~--------------Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKL--------------GLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhC--------------CCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 4899999999999999888764 4566666543211100
Q ss_pred --------------c-cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 243 --------------F-DERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 243 --------------~-~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
+ ...+.+.+.+.+.+.|+++ .+++|++++ ++.+.+....+|.+ +.++.||.|+|...
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~--i~A~lVI~AdG~~S 248 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRV--IPCRLATVASGAAS 248 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcE--EECCEEEECCCcCh
Confidence 1 1233455666667789998 677898885 34443322234654 99999999999754
No 357
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.98 E-value=0.0093 Score=62.38 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
.+.+.+.+.+++.||+++.+++|++++. +.+.+.. .+|+. +.+|.||.|.|..
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~a~~vV~AdG~~ 168 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRL-DDGRR--LEAALAIAADGAA 168 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEE-CCCCE--EEeCEEEEecCCC
Confidence 4455666777888999999999999854 4455443 34654 9999999999953
No 358
>PRK13984 putative oxidoreductase; Provisional
Probab=96.95 E-value=0.0017 Score=71.94 Aligned_cols=90 Identities=23% Similarity=0.240 Sum_probs=67.3
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------C--cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------N--SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~l~~~ 258 (547)
...++++|||+|+.|+.+|..|.+. +.+|+++++.+.+. | .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~--------------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM--------------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999875 68999999887542 2 13455666666788999
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
||++++++.|.. .+.+.. . ...+|.||+|+|..
T Consensus 347 gv~~~~~~~v~~----~~~~~~---~---~~~yD~vilAtGa~ 379 (604)
T PRK13984 347 GVKIHLNTRVGK----DIPLEE---L---REKHDAVFLSTGFT 379 (604)
T ss_pred CcEEECCCEeCC----cCCHHH---H---HhcCCEEEEEcCcC
Confidence 999999987732 111111 1 26799999999964
No 359
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.94 E-value=0.0069 Score=63.18 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCC-cEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRDG-IEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~G-V~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+++.| |+++ ++.+++++ ++.+.+.. .+|+. +.+|.||.|.|.
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~adG~ 165 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTL-ADGQV--LRADLVVGADGA 165 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEE-CCCCE--EEeeEEEEeCCC
Confidence 34555666677777 9999 88899885 34555543 34644 999999999995
No 360
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.93 E-value=0.00078 Score=74.23 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=32.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
.+.||||||+|.|||+||..+++.|.+|+|||+.+.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 356999999999999999999999999999998654
No 361
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.91 E-value=0.00072 Score=69.58 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCeEEEECCchHHHHHHHhcCCCC-CeEEEEcCCCCCccC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSS-YDVQVVSPQNYFAFT 66 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g-~~Vtlid~~~~~~~~ 66 (547)
..+|||||||.|||+||.+|-+.| .+++|+|..+..++.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 458999999999999999998655 569999999988764
No 362
>PRK09897 hypothetical protein; Provisional
Probab=96.91 E-value=0.0081 Score=64.96 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=31.1
Q ss_pred HhCC--cEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 256 QRDG--IEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 256 ~~~G--V~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
.+.| +.++.+++|+.++. +++.+....+|.. +.+|.||+|+|-.
T Consensus 118 ~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~--i~aD~VVLAtGh~ 165 (534)
T PRK09897 118 RQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPS--ETFDLAVIATGHV 165 (534)
T ss_pred HHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeE--EEcCEEEECCCCC
Confidence 4455 78888989999854 4555554223344 8999999999963
No 363
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.91 E-value=0.042 Score=51.44 Aligned_cols=135 Identities=18% Similarity=0.264 Sum_probs=73.4
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-------cc--------------------
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS-------FD-------------------- 244 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-------~~-------------------- 244 (547)
.|+|||+||+|+-+|..|++. +.+|.++++...+... |+
T Consensus 19 DV~IVGaGpaGl~aA~~La~~--------------g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKA--------------GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHH--------------TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHC--------------CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 899999999999999999986 6899999987644211 11
Q ss_pred -----------HHHHHHHHHHHHhCCcEEEcCceEEEE--eC-CeEE---EEec---cCC---eEEEEeeceEEEccCCC
Q 041537 245 -----------ERISSFAEKKFQRDGIEVLTECRVVNV--SD-KEIT---MKIK---STG---AVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 245 -----------~~~~~~~~~~l~~~GV~v~~~~~V~~v--~~-~~v~---~~~~---~~G---~~~~i~~D~vv~a~G~~ 301 (547)
.++...+....-+.|++++..+.|+.+ .+ ++|. +.-+ ..| +...+++..||=|||-
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH- 163 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH- 163 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S-
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC-
Confidence 122222333334589999999999887 34 3432 2211 112 2245999999999995
Q ss_pred CCcchHHHHHHhCC-C------CCccE--------EeCCCCCcCCCCCEEEeCccCc
Q 041537 302 TRPAIKDFMEQIGQ-G------KRRVL--------ATNEWLRVKECENVYALGDCAT 343 (547)
Q Consensus 302 ~~p~~~~l~~~~~~-~------~~g~i--------~Vd~~l~~~~~~~VfaiGD~a~ 343 (547)
..+....+.++..+ . ..+.. .|+.+-++ +|++|++|=+++
T Consensus 164 da~v~~~~~kk~~~~~~~~~v~Ge~~m~~~~~E~~vV~~T~eV--~PGL~v~GMa~~ 218 (230)
T PF01946_consen 164 DAEVVRVLAKKLKLLTPTGKVPGEKSMWAERGEDLVVENTREV--YPGLYVAGMAAN 218 (230)
T ss_dssp SSSSTSHHHHHHHHTTSSS-----EEB-HHHHHHHHHHCEEEE--ETTEEE-THHHH
T ss_pred chHHHHHHHHHhhhcccccccCCCCCcCcchhHHHHHHhhccc--cCCEEEechhhH
Confidence 23333333333321 1 11111 12222222 799999998765
No 364
>PRK07190 hypothetical protein; Provisional
Probab=96.90 E-value=0.012 Score=63.27 Aligned_cols=55 Identities=22% Similarity=0.377 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCCCCCcch
Q 041537 247 ISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAI 306 (547)
Q Consensus 247 ~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~ 306 (547)
+.+.+.+.+++.||+++.+++|++++ ++++.+.. .+|++ +.|+.||.|.| .+..+
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~-~~g~~--v~a~~vVgADG--~~S~v 167 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTL-SNGER--IQSRYVIGADG--SRSFV 167 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEE-CCCcE--EEeCEEEECCC--CCHHH
Confidence 34455566778899999999999985 34555443 34654 99999999999 45433
No 365
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.90 E-value=0.0044 Score=60.63 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=30.9
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
+..|||||+|.|||+++..|-..+-.|+|+|++..+
T Consensus 9 lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 9 LSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI 44 (477)
T ss_pred CCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence 347999999999999999998777779999996554
No 366
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.90 E-value=0.0096 Score=65.10 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhC-CcEEEcCceEEEEeC--CeEEEEecc-CCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRD-GIEVLTECRVVNVSD--KEITMKIKS-TGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~-GV~v~~~~~V~~v~~--~~v~~~~~~-~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+.+. ||+++.+++|++++. +++++.... +|+..++.+|.||-|.|.
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~ 172 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGA 172 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCC
Confidence 3445555666664 999999999999964 455544322 464456999999999994
No 367
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.88 E-value=0.0024 Score=67.47 Aligned_cols=90 Identities=12% Similarity=0.198 Sum_probs=60.0
Q ss_pred ccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc-------cc---HHHHHHHHHHHHhC
Q 041537 189 RNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS-------FD---ERISSFAEKKFQRD 258 (547)
Q Consensus 189 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-------~~---~~~~~~~~~~l~~~ 258 (547)
..++|+|||+||+|+++|..|... .+.+|+++++.+.+... .. ..+.+.+.+.+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-------------~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~ 104 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-------------ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSP 104 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-------------cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhC
Confidence 346999999999999999987643 26899999999986431 11 23444555556667
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
++++..|..|-. .+.+.. . ...+|.||+|+|..
T Consensus 105 ~v~f~gnv~VG~----Dvt~ee-----L-~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 105 NYRFFGNVHVGV----DLKMEE-----L-RNHYNCVIFCCGAS 137 (506)
T ss_pred CeEEEeeeEecC----ccCHHH-----H-HhcCCEEEEEcCCC
Confidence 888876544321 111111 1 14689999999954
No 368
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.88 E-value=0.013 Score=61.25 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEeC---CeEEEEeccCCeEEEEeeceEEEccCCCCCcchHH
Q 041537 248 SSFAEKKFQRDGIEVLTECRVVNVSD---KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKD 308 (547)
Q Consensus 248 ~~~~~~~l~~~GV~v~~~~~V~~v~~---~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~ 308 (547)
.+.+.+...+.|+++++++++++++. +.+.+....+|+..++.+|+||-|-|. +..+..
T Consensus 106 ~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~--~S~vR~ 167 (392)
T PRK08243 106 TRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGF--HGVSRA 167 (392)
T ss_pred HHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCC--CCchhh
Confidence 34445555678999999999998854 233333223476556999999999995 444433
No 369
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.88 E-value=0.0061 Score=64.03 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 248 SSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 248 ~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+++.|++++.++++++++. +++.+.. .+|++ +.+|+||.|.|.
T Consensus 115 ~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~g~~--~~a~~vVgAdG~ 166 (405)
T PRK05714 115 QDALLERLHDSDIGLLANARLEQMRRSGDDWLLTL-ADGRQ--LRAPLVVAADGA 166 (405)
T ss_pred HHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCC
Confidence 34455566778999999999999853 4455443 34654 999999999995
No 370
>PRK06753 hypothetical protein; Provisional
Probab=96.83 E-value=0.0082 Score=62.28 Aligned_cols=45 Identities=13% Similarity=0.343 Sum_probs=31.6
Q ss_pred CcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCcchHH
Q 041537 259 GIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKD 308 (547)
Q Consensus 259 GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~ 308 (547)
.++++++++|++++. +.+.+.. .+|+. +.+|+||-|-|. ...+..
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~~~~vigadG~--~S~vR~ 156 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHF-ADGES--EAFDLCIGADGI--HSKVRQ 156 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEE-CCCCE--EecCEEEECCCc--chHHHH
Confidence 457899999999854 4455543 34665 899999999994 444433
No 371
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.82 E-value=0.01 Score=64.65 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=60.3
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCC-ccC-----C------------------------
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGD-HIL-----N------------------------ 241 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~il-----~------------------------ 241 (547)
.|+|||||+.|++.|..+++. +.+|.|+++.. .+. |
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~--------------G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARM--------------GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHc--------------CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 799999999999999999986 67788887762 110 0
Q ss_pred ------------------------cccH-HHHHHHHHHHHhC-CcEEEcCceEEEE--eCCeEEEEeccCCeEEEEeece
Q 041537 242 ------------------------SFDE-RISSFAEKKFQRD-GIEVLTECRVVNV--SDKEITMKIKSTGAVCSIPHGL 293 (547)
Q Consensus 242 ------------------------~~~~-~~~~~~~~~l~~~-GV~v~~~~~V~~v--~~~~v~~~~~~~G~~~~i~~D~ 293 (547)
.++. .+...+.+.+++. |++++ ...|.++ +++.+....+.+|.. +.|+.
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~--I~Ak~ 148 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLE--FRAKA 148 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCE--EECCE
Confidence 0111 1123344445544 78875 4567776 345554333345765 99999
Q ss_pred EEEccCC
Q 041537 294 VLWSTGV 300 (547)
Q Consensus 294 vv~a~G~ 300 (547)
||.|+|.
T Consensus 149 VIlATGT 155 (618)
T PRK05192 149 VVLTTGT 155 (618)
T ss_pred EEEeeCc
Confidence 9999994
No 372
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.82 E-value=0.0027 Score=69.78 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=65.3
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC---------cccHHHHHHHHHHHHhC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN---------SFDERISSFAEKKFQRD 258 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------~~~~~~~~~~~~~l~~~ 258 (547)
..+++|+|||+|++|+-+|..+.+. +.+|+++++.+.+.. .++.++.+.-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM--------------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 5678999999999999999999875 679999998776532 23455666666778889
Q ss_pred CcEEEcCceE-EEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRV-VNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V-~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
|++++.++.+ ..+..+. . ...+|.||+|+|..
T Consensus 201 Gv~~~~~~~~~~~~~~~~---------~--~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ---------L--EGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEEEeCCEECCcCCHHH---------H--HhhCCEEEEeeCCC
Confidence 9999998765 3221110 0 13479999999964
No 373
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.80 E-value=0.015 Score=63.66 Aligned_cols=59 Identities=14% Similarity=0.352 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhC-CcEEEcCceEEEEeC--CeEEEEec-cCCeEEEEeeceEEEccCCCCCcchHH
Q 041537 247 ISSFAEKKFQRD-GIEVLTECRVVNVSD--KEITMKIK-STGAVCSIPHGLVLWSTGVGTRPAIKD 308 (547)
Q Consensus 247 ~~~~~~~~l~~~-GV~v~~~~~V~~v~~--~~v~~~~~-~~G~~~~i~~D~vv~a~G~~~~p~~~~ 308 (547)
+.+.+.+.+++. +|++++++++++++. +.+.+... .+|+ .++.+|.||-|.|. +..+..
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~ad~vVgADG~--~S~vR~ 189 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP-YTLEADWVIACDGA--RSPLRE 189 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc-EEEEeCEEEECCCC--CcHHHH
Confidence 444555666664 799999999999964 44443321 2343 24999999999994 443433
No 374
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.012 Score=62.58 Aligned_cols=136 Identities=19% Similarity=0.291 Sum_probs=82.0
Q ss_pred cccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCce-EEEEecCCccC----------------------C-----
Q 041537 190 NLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVR-ITLIQSGDHIL----------------------N----- 241 (547)
Q Consensus 190 ~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~il----------------------~----- 241 (547)
...|+|||||++|+-+|..|.+.. .. +.++++.+.+. |
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~ 73 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR 73 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC
Confidence 348999999999999999999873 34 66777664321 1
Q ss_pred ------cccHHHHHHHHHHHHhCCcE--EEcCceEEEE--eCC-eEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHH
Q 041537 242 ------SFDERISSFAEKKFQRDGIE--VLTECRVVNV--SDK-EITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFM 310 (547)
Q Consensus 242 ------~~~~~~~~~~~~~l~~~GV~--v~~~~~V~~v--~~~-~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~ 310 (547)
.+. .+.+++.+.+++.++. +..++.|+.+ +.+ +......++|...++.+|.||+|||.-..|.+..+
T Consensus 74 ~~~~~~~~~-~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~- 151 (443)
T COG2072 74 WDEAFAPFA-EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF- 151 (443)
T ss_pred CcccCCCcc-cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC-
Confidence 112 2678888888877653 3344455444 332 22222222344322779999999998777766554
Q ss_pred HHhCCC-CCccEEeCCC----CCcCCCCCEEEeCccCcc
Q 041537 311 EQIGQG-KRRVLATNEW----LRVKECENVYALGDCATI 344 (547)
Q Consensus 311 ~~~~~~-~~g~i~Vd~~----l~~~~~~~VfaiGD~a~~ 344 (547)
.|++ -.|.+.=-.+ ... .-++|-+||=-++.
T Consensus 152 --~G~~~f~g~~~HS~~~~~~~~~-~GKrV~VIG~GaSA 187 (443)
T COG2072 152 --AGLDEFKGRILHSADWPNPEDL-RGKRVLVIGAGASA 187 (443)
T ss_pred --CCccCCCceEEchhcCCCcccc-CCCeEEEECCCccH
Confidence 1332 2333221111 112 34689999987764
No 375
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.78 E-value=0.001 Score=67.03 Aligned_cols=44 Identities=32% Similarity=0.308 Sum_probs=35.6
Q ss_pred CCCCCeEEEECCchHHHHHHHhcC------CCCCeEEEEcCCCCCccCCC
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLD------VSSYDVQVVSPQNYFAFTPL 68 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~------~~g~~Vtlid~~~~~~~~p~ 68 (547)
.....||+|||||||||++|.+|. ....+|.|+|+....+.+.+
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl 122 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL 122 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence 344579999999999999998885 35678999999988766543
No 376
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.76 E-value=0.0013 Score=64.38 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=35.7
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
+.|++|||||++|+.+|..|++.|.+|.|||++++.++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 468999999999999999888999999999999988764
No 377
>PRK05868 hypothetical protein; Validated
Probab=96.75 E-value=0.0098 Score=61.78 Aligned_cols=47 Identities=15% Similarity=0.324 Sum_probs=34.0
Q ss_pred hCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCcchHH
Q 041537 257 RDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKD 308 (547)
Q Consensus 257 ~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~ 308 (547)
..|++++++++|++++. +.+.+.. .+|++ +.+|+||-|-|+ +..+..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~-~dg~~--~~adlvIgADG~--~S~vR~ 164 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTF-ERAAA--REFDLVIGADGL--HSNVRR 164 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEE-CCCCe--EEeCEEEECCCC--CchHHH
Confidence 35899999999999853 4555543 34665 899999999995 444433
No 378
>PRK06126 hypothetical protein; Provisional
Probab=96.75 E-value=0.015 Score=63.72 Aligned_cols=54 Identities=11% Similarity=0.184 Sum_probs=37.8
Q ss_pred HHHHHHHHHHh-CCcEEEcCceEEEEeC--CeEE--EEeccCCeEEEEeeceEEEccCC
Q 041537 247 ISSFAEKKFQR-DGIEVLTECRVVNVSD--KEIT--MKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 247 ~~~~~~~~l~~-~GV~v~~~~~V~~v~~--~~v~--~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+.+.+.+.+++ .||+++++++|++++. ++++ +.+..+|+..++.+|.||-|.|.
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~ 186 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGA 186 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCc
Confidence 34445555555 4899999999999964 3333 33334565556999999999995
No 379
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.75 E-value=0.023 Score=59.53 Aligned_cols=93 Identities=22% Similarity=0.388 Sum_probs=65.4
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC------------------Ccc----------
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL------------------NSF---------- 243 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il------------------~~~---------- 243 (547)
.|+|||+||.|.-+|..|++. +.+|.++|+++.+. +.+
T Consensus 5 DVvIVGaGPAGs~aA~~la~~--------------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKA--------------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHc--------------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 799999999999999999986 45666666544321 001
Q ss_pred -----------------------cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEcc
Q 041537 244 -----------------------DERISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWST 298 (547)
Q Consensus 244 -----------------------~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~ 298 (547)
-..+-+++.+..++.|++++.++++..+. ++++......++ .++.++.||.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~a~~vI~Ad 148 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD--DEVRAKVVIDAD 148 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC--EEEEcCEEEECC
Confidence 12334456677788999999999999985 445444432223 359999999999
Q ss_pred CC
Q 041537 299 GV 300 (547)
Q Consensus 299 G~ 300 (547)
|.
T Consensus 149 G~ 150 (396)
T COG0644 149 GV 150 (396)
T ss_pred Cc
Confidence 94
No 380
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.75 E-value=0.015 Score=60.58 Aligned_cols=52 Identities=10% Similarity=0.229 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHh-CCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQR-DGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~-~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+.+ .|++++.+++|++++ ++++.+.. .+|+. +.+|.||-|.|.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vV~AdG~ 160 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTL-DNGQQ--LRAKLLIAADGA 160 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEE-CCCCE--EEeeEEEEecCC
Confidence 345555566666 499999999999985 34555543 34654 999999999995
No 381
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.73 E-value=0.0049 Score=65.39 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=28.3
Q ss_pred EECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 33 LLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 33 IIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
|||+|.||++||..+++.|.+|+||||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999764
No 382
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.73 E-value=0.035 Score=58.29 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe----CCe-----EEEEeccCCeEEEEe---eceEEEccCC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVS----DKE-----ITMKIKSTGAVCSIP---HGLVLWSTGV 300 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~----~~~-----v~~~~~~~G~~~~i~---~D~vv~a~G~ 300 (547)
+.+..-+.+.|+++||++..+++|+.++ ++. +.+. .+|....|+ -|+|+++.|-
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS 272 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGS 272 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCc
Confidence 4777888999999999999999999884 121 2333 345544444 5999999884
No 383
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.73 E-value=0.0011 Score=75.22 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=31.3
Q ss_pred CeEEEECCchHHHHHHHhcCCC--CCeEEEEcCCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVS--SYDVQVVSPQNY 62 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~--g~~Vtlid~~~~ 62 (547)
++|+|||||+|||++|..|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 3799999999999999999976 899999999875
No 384
>PRK10015 oxidoreductase; Provisional
Probab=96.68 E-value=0.019 Score=60.75 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 247 ISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 247 ~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+-+.+.+.+++.|++++.+++|+++.. +.+..... ++. ++.+|.||.|.|.
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~--~i~A~~VI~AdG~ 162 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDD--ILEANVVILADGV 162 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCe--EEECCEEEEccCc
Confidence 344566677788999999999998753 45543331 233 3999999999995
No 385
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.67 E-value=0.0017 Score=70.51 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
...||||||+| +||+||.++++.|.+|+|||+.+..+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 35799999999 999999999999999999999876443
No 386
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.66 E-value=0.0016 Score=65.18 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=30.2
Q ss_pred CeEEEECCchHHHHHHHhcCCCC-CeEEEEcCCCCCc
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSS-YDVQVVSPQNYFA 64 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g-~~Vtlid~~~~~~ 64 (547)
+|+||||+|+||..+|.+|++.+ .+|+|+|+.++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 58999999999999999999876 7999999987644
No 387
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.63 E-value=0.02 Score=59.81 Aligned_cols=92 Identities=27% Similarity=0.401 Sum_probs=60.9
Q ss_pred EEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC-------------------------------
Q 041537 193 FVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN------------------------------- 241 (547)
Q Consensus 193 vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~------------------------------- 241 (547)
|+|||+|+.|.-+|..+.+. +.+|+++++.+.+..
T Consensus 2 viIiGaG~AGl~~A~~la~~--------------g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARP--------------GLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYR 67 (388)
T ss_pred EEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEe
Confidence 89999999999999988754 566777775542210
Q ss_pred -------------cc-cHHHHHHHHHHHHhCCcEEEcCceEEEEeCC---eEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 242 -------------SF-DERISSFAEKKFQRDGIEVLTECRVVNVSDK---EITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 242 -------------~~-~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
.+ ...+.+.+.+.+.+.|++++ ...+..++.+ .+.+.. .+|+. +.++.||.|+|..+
T Consensus 68 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~-~~g~~--~~a~~VI~A~G~~s 141 (388)
T TIGR01790 68 FPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYC-AGGQR--IQARLVIDARGFGP 141 (388)
T ss_pred cCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEe-CCCCE--EEeCEEEECCCCch
Confidence 00 12344556666677899886 4567777533 233332 34644 99999999999643
No 388
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.62 E-value=0.015 Score=60.77 Aligned_cols=101 Identities=19% Similarity=0.296 Sum_probs=69.4
Q ss_pred ccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCC-ccCCc---------------------------
Q 041537 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGD-HILNS--------------------------- 242 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~il~~--------------------------- 242 (547)
..|+|||||++|+-+|..|++. +.+|+|+|+.+ .+.+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~--------------G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~ 68 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARA--------------GLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALG 68 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhC--------------CCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhcc
Confidence 3899999999999999999875 56777777651 11100
Q ss_pred ---------------------------------ccHHHHHHHHHHHHhCC-cEEEcCceEEEEeCC--eEEEEeccCCeE
Q 041537 243 ---------------------------------FDERISSFAEKKFQRDG-IEVLTECRVVNVSDK--EITMKIKSTGAV 286 (547)
Q Consensus 243 ---------------------------------~~~~~~~~~~~~l~~~G-V~v~~~~~V~~v~~~--~v~~~~~~~G~~ 286 (547)
-...+.+.+.+.+.+.+ |+++.++.|+.++.+ .+.+.-..+|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~ 148 (387)
T COG0654 69 VPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET 148 (387)
T ss_pred CCceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE
Confidence 01244556666666666 999999999999643 444332215774
Q ss_pred EEEeeceEEEccCCCCCcchHHH
Q 041537 287 CSIPHGLVLWSTGVGTRPAIKDF 309 (547)
Q Consensus 287 ~~i~~D~vv~a~G~~~~p~~~~l 309 (547)
+.||+||-|=| .+..+...
T Consensus 149 --~~a~llVgADG--~~S~vR~~ 167 (387)
T COG0654 149 --LDADLLVGADG--ANSAVRRA 167 (387)
T ss_pred --EecCEEEECCC--CchHHHHh
Confidence 99999999999 45544443
No 389
>PRK07588 hypothetical protein; Provisional
Probab=96.62 E-value=0.012 Score=61.55 Aligned_cols=40 Identities=13% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 258 DGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 258 ~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.|++++++++|++++. +++.+.. .+|+. +.+|+||-|.|.
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~~d~vIgADG~ 156 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTF-ERGTP--RDFDLVIGADGL 156 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEE-CCCCE--EEeCEEEECCCC
Confidence 4799999999999964 4555543 35765 899999999995
No 390
>PRK09126 hypothetical protein; Provisional
Probab=96.57 E-value=0.024 Score=59.24 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=33.4
Q ss_pred HHHHH-HhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 251 AEKKF-QRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 251 ~~~~l-~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+.+.+ +..|++++.+++|++++. +.+.+.. .+|+. +.+|+||.|.|.
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~ 165 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTL-ANGRR--LTARLLVAADSR 165 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEE-cCCCE--EEeCEEEEeCCC
Confidence 33444 346999999999999853 4444432 34654 999999999995
No 391
>PLN03000 amine oxidase
Probab=96.56 E-value=0.0022 Score=72.15 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=37.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPL 68 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~ 68 (547)
..++|+|||||++||++|+.|.+.|++|+|+|+++..++...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 468999999999999999999999999999999988776543
No 392
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.52 E-value=0.027 Score=59.04 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHh-CCcEEEcCceEEEEeC--CeEEEE--eccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQR-DGIEVLTECRVVNVSD--KEITMK--IKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~-~GV~v~~~~~V~~v~~--~~v~~~--~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+.+ .+|+++++++|++++. +++.+. ...+++ .+.+|+||-|-|.
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~--~~~adlvIgADG~ 165 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVE--TVSAAYLIACDGV 165 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCc--EEecCEEEECCCc
Confidence 344555555555 4899999999999954 344443 222233 3899999999995
No 393
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.51 E-value=0.0028 Score=69.90 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=31.7
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
..||||||||.|||+||..+++.|.+|+|||+..
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 5699999999999999999999999999999964
No 394
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.50 E-value=0.0025 Score=69.84 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=32.5
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
..||||||+|.|||+||..+++.|.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5799999999999999999999999999999988
No 395
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.49 E-value=0.024 Score=59.21 Aligned_cols=53 Identities=9% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhC-CcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 246 RISSFAEKKFQRD-GIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 246 ~~~~~~~~~l~~~-GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
.+.+.+.+.+++. ||+++.++++++++. +.+.+.. .+|++ +.+|+||-|.|..
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~~ 168 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTL-ADGEE--IQAKLVIGADGAN 168 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEE-CCCCE--EEeCEEEEeCCCC
Confidence 3445555666666 999999999999853 4444443 34654 9999999999953
No 396
>PRK11445 putative oxidoreductase; Provisional
Probab=96.49 E-value=0.042 Score=56.59 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=32.8
Q ss_pred HhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 256 QRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 256 ~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.||+++.++.+++++. +++.+....+|+..++.+|.||.|.|.
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGA 155 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCC
Confidence 356899999999998853 455444223465445999999999995
No 397
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.49 E-value=0.002 Score=71.50 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=32.8
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
...||||||||.|||+||..+++.|.+|+|||+.+.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 347999999999999999999999999999999754
No 398
>PRK08275 putative oxidoreductase; Provisional
Probab=96.48 E-value=0.002 Score=70.53 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCC--CCeEEEEcCCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVS--SYDVQVVSPQNY 62 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~--g~~Vtlid~~~~ 62 (547)
....||||||||.|||+||..+++. |.+|+||||.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 3457999999999999999999864 789999999764
No 399
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0038 Score=64.10 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=31.7
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ 60 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~ 60 (547)
...++|||||||.||..+|...++.|.+.+|+..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45789999999999999999999999999998764
No 400
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.43 E-value=0.0033 Score=68.13 Aligned_cols=35 Identities=23% Similarity=0.484 Sum_probs=31.4
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
..||||||+|.|||+||..+++ |.+|+|||+.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~ 37 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR 37 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence 5699999999999999999976 8999999997653
No 401
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.42 E-value=0.0033 Score=64.29 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=28.3
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCC--CeEEEEcCCCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSS--YDVQVVSPQNYF 63 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g--~~Vtlid~~~~~ 63 (547)
...++|+|||||-++...+..|.+.+ .+|++|-|+..+
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 45689999999999999999998544 589999997654
No 402
>PRK07538 hypothetical protein; Provisional
Probab=96.41 E-value=0.018 Score=60.79 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHh-CC-cEEEcCceEEEEeC--CeE--EEEeccCCeEEEEeeceEEEccCC
Q 041537 250 FAEKKFQR-DG-IEVLTECRVVNVSD--KEI--TMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 250 ~~~~~l~~-~G-V~v~~~~~V~~v~~--~~v--~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+ .| ++++++++|++++. +++ .+.+..+|+..++.+|+||-|-|+
T Consensus 107 ~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~ 163 (413)
T PRK07538 107 LLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGI 163 (413)
T ss_pred HHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCC
Confidence 34444434 46 47999999999853 332 333322343345999999999995
No 403
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.40 E-value=0.039 Score=57.29 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCC-cEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRDG-IEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~G-V~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+.+.| ++++.+++|++++. +.+.+.. .+|+. +.+|+||-|.|.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~~~~vi~adG~ 161 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTL-DDGQQ--LRARLLVGADGA 161 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEE-CCCCE--EEeeEEEEeCCC
Confidence 34555666677777 99999999999853 4555543 34664 999999999995
No 404
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.39 E-value=0.0036 Score=68.88 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=35.1
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
...||||||+|.|||+||..+++.|.+|+|+|+.+..+.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 357999999999999999999999999999999876544
No 405
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.39 E-value=0.0038 Score=68.17 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYF 63 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~ 63 (547)
...||||||+|.|||+||..++ .|.+|+||||.+..
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~ 43 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLK 43 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCC
Confidence 4579999999999999999996 59999999997654
No 406
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.38 E-value=0.005 Score=69.91 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=32.2
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGD 237 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 237 (547)
..+++|+|||+||.|+++|..|... +.+|+++++.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~--------------Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRS--------------GHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhC--------------CCeEEEEcccc
Confidence 5788999999999999999999874 78999999753
No 407
>PRK08013 oxidoreductase; Provisional
Probab=96.35 E-value=0.041 Score=57.76 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhC-CcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCCCCcchHH
Q 041537 247 ISSFAEKKFQRD-GIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKD 308 (547)
Q Consensus 247 ~~~~~~~~l~~~-GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~ 308 (547)
+.+.+.+.+++. ||+++.++++++++. +.+.+.. .+|++ +.+|+||-|-|. +..+..
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~~--i~a~lvVgADG~--~S~vR~ 172 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTL-KDGSM--LTARLVVGADGA--NSWLRN 172 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEE-cCCCE--EEeeEEEEeCCC--CcHHHH
Confidence 344455555554 899999999999853 4455443 34765 999999999994 444433
No 408
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.35 E-value=0.04 Score=57.65 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEe---CCe--EEEEeccCCeEEEEeeceEEEccCC
Q 041537 248 SSFAEKKFQRDGIEVLTECRVVNVS---DKE--ITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 248 ~~~~~~~l~~~GV~v~~~~~V~~v~---~~~--v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+.|+.++++++++++. ++. |++. .+|+..++.+|+||-|-|.
T Consensus 106 ~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~--~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 106 TRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFE--RDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred HHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEE--ECCeEEEEEeCEEEECCCC
Confidence 3445555666788999888777663 233 4443 2476445999999999995
No 409
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.34 E-value=0.043 Score=59.49 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEeC--Ce---EEEEeccCCeEEEEeeceEEEccC
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVSD--KE---ITMKIKSTGAVCSIPHGLVLWSTG 299 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~---v~~~~~~~G~~~~i~~D~vv~a~G 299 (547)
.+.+.+.+.+++.||++++++.++++.. +. +.+.. .+|+..++.++.||+|+|
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~-~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKI-NGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEe-CCCeEEEEecCeEEEeCC
Confidence 3455566677788999999999999853 33 33332 234445699999999998
No 410
>PRK07045 putative monooxygenase; Reviewed
Probab=96.34 E-value=0.041 Score=57.45 Aligned_cols=57 Identities=14% Similarity=0.272 Sum_probs=37.7
Q ss_pred HHHHHHHHHHh-CCcEEEcCceEEEEeC--CeE--EEEeccCCeEEEEeeceEEEccCCCCCcchHH
Q 041537 247 ISSFAEKKFQR-DGIEVLTECRVVNVSD--KEI--TMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKD 308 (547)
Q Consensus 247 ~~~~~~~~l~~-~GV~v~~~~~V~~v~~--~~v--~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~ 308 (547)
+.+.+.+.+.+ .|++++++++|+.++. +++ .+. ..+|++ +.+|+||-|.|. ...+..
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~-~~~g~~--~~~~~vIgADG~--~S~vR~ 169 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVT-LSDGER--VAPTVLVGADGA--RSMIRD 169 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEE-eCCCCE--EECCEEEECCCC--ChHHHH
Confidence 44445555543 5899999999999853 332 233 234664 999999999994 444444
No 411
>PRK12839 hypothetical protein; Provisional
Probab=96.33 E-value=0.0039 Score=68.42 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=35.5
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
...+|||||+|.+|+++|..+++.|.+|+|||+....+..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 4679999999999999999999999999999998765543
No 412
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.33 E-value=0.02 Score=60.42 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=28.6
Q ss_pred CcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 259 GIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 259 GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.++.+++|++++. +++++.. .+|+. +.+|.||.|.|.
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vVgADG~ 157 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLF-TDGTE--YRCDLLIGADGI 157 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEE-cCCCE--EEeeEEEECCCc
Confidence 456788999999853 4455543 34664 999999999995
No 413
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.32 E-value=0.0031 Score=69.44 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=29.5
Q ss_pred eEEEECCchHHHHHHHhcC----CCCCeEEEEcCCC
Q 041537 30 RVVLLGTGWAGISFLKDLD----VSSYDVQVVSPQN 61 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~----~~g~~Vtlid~~~ 61 (547)
+|||||||.|||+||..++ +.|.+|+||||..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 6999999999999999998 6799999999964
No 414
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.30 E-value=0.0034 Score=68.75 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=34.9
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
..+|||||+|.+|+++|..+++.|.+|+|||+.+..+.+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 579999999999999999999999999999998765443
No 415
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.29 E-value=0.0048 Score=67.57 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=36.9
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPL 68 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~ 68 (547)
....||||||+| +|++||..+++.|.+|+|||+.+.++.+..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 447899999999 899999999999999999999987766543
No 416
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.29 E-value=0.038 Score=57.44 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCC-cEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRDG-IEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~G-V~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+.+.+ ++++.+++++++. ++.+.+.. +++ + +.+|+||-|-|.
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~~-~--~~adlvIgADG~ 158 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKF-DDK-Q--IKCNLLIICDGA 158 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEE-cCC-E--EeeCEEEEeCCC
Confidence 44555566666664 8999999999984 34555443 334 3 999999999994
No 417
>PRK06996 hypothetical protein; Provisional
Probab=96.25 E-value=0.042 Score=57.63 Aligned_cols=55 Identities=11% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEecc-CCeEEEEeeceEEEccCC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKS-TGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~-~G~~~~i~~D~vv~a~G~ 300 (547)
..+.+.+.+.+++.|++++.++++++++. +++++...+ +|+ .++.+|+||-|-|.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~-~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGA-RTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcc-eEEeeeEEEECCCC
Confidence 45677788888889999999999998854 456655321 232 24999999999994
No 418
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.23 E-value=0.034 Score=57.77 Aligned_cols=94 Identities=21% Similarity=0.333 Sum_probs=62.5
Q ss_pred EEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC--Cc---------c------------------
Q 041537 193 FVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL--NS---------F------------------ 243 (547)
Q Consensus 193 vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il--~~---------~------------------ 243 (547)
|+|||+|+.|.-+|..|.+.. .+.+|.+|++.+... +. .
T Consensus 2 viIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 799999999999999994431 367888887765541 00 0
Q ss_pred ----------------cHHHHHHHHHHHHhCCcEEEcCceEEEEeCCeE-EEEeccCCeEEEEeeceEEEccCCC
Q 041537 244 ----------------DERISSFAEKKFQRDGIEVLTECRVVNVSDKEI-TMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 244 ----------------~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~v-~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
...+.+.+.+.+...| .+..+++|.+|+.+.. ....+.+|+. +.++.||-|.|..
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~--i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRT--IRARVVVDARGPS 141 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCE--EEeeEEEECCCcc
Confidence 0133445555556334 5677889999976543 2222345765 9999999999954
No 419
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.23 E-value=0.045 Score=57.53 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=33.8
Q ss_pred HHHHHHHh-CCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 250 FAEKKFQR-DGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 250 ~~~~~l~~-~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+ .||+++.+++|++++. +.+.+.. .+|+. +.+|+||-|.|.
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~lvIgADG~ 166 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTL-DNGQA--LTAKLVVGADGA 166 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEE-CCCCE--EEeCEEEEeCCC
Confidence 34444444 3799999999999853 4444443 34765 999999999994
No 420
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.21 E-value=0.037 Score=57.72 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCC-cEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 247 ISSFAEKKFQRDG-IEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 247 ~~~~~~~~l~~~G-V~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+.+.+.+.+.+.+ +. +.+++|.+++ ++++.+.. .+|+. +.+|.||.|.|.
T Consensus 113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~ 165 (388)
T PRK07494 113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTL-ADGTT--LSARLVVGADGR 165 (388)
T ss_pred HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEE-CCCCE--EEEeEEEEecCC
Confidence 3445555566654 55 7799999884 45555543 34654 999999999995
No 421
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.20 E-value=0.034 Score=58.00 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCCCCCcchH
Q 041537 258 DGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIK 307 (547)
Q Consensus 258 ~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~ 307 (547)
.||+++.+++|++++ ++++++.. .+|++ +.+|+||-|.|. .+.+.
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~-~~g~~--~~~~lvIgADG~--~S~vR 170 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTL-ESGAE--IEAKWVIGADGA--NSQVR 170 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEE-CCCCE--EEeeEEEEecCC--CchhH
Confidence 379999999999885 34455443 34664 999999999994 44443
No 422
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.20 E-value=0.05 Score=56.83 Aligned_cols=53 Identities=17% Similarity=0.374 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEecc-----CCeEEEEeeceEEEccCC
Q 041537 247 ISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKS-----TGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 247 ~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~-----~G~~~~i~~D~vv~a~G~ 300 (547)
+-+.+.+.+.+.|++++.+ .++++.. +.+.+.... +|+..++.+|.||-|.|.
T Consensus 94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGA 153 (388)
T ss_pred HHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCC
Confidence 3345556667789999765 5877743 334333211 233345999999999995
No 423
>PLN02976 amine oxidase
Probab=96.20 E-value=0.0043 Score=72.52 Aligned_cols=40 Identities=20% Similarity=0.482 Sum_probs=36.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~ 66 (547)
..++|+|||||++|+++|+.|.+.|++|+|+|+++..++.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 4578999999999999999999999999999998887654
No 424
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.19 E-value=0.033 Score=58.71 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=68.7
Q ss_pred cccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-----------------------------
Q 041537 190 NLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL----------------------------- 240 (547)
Q Consensus 190 ~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il----------------------------- 240 (547)
.++++|||+|++|+-.|.+|.+. +.+++++++.+.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~--------------g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~ 71 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE--------------GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMM 71 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC--------------CCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhh
Confidence 35999999999999999999875 56667666665431
Q ss_pred -----------Cc-c-c-HHHHHHHHHHHHhCCc--EEEcCceEEEEeCC---e--EEEEeccCCeEEEEeeceEEEccC
Q 041537 241 -----------NS-F-D-ERISSFAEKKFQRDGI--EVLTECRVVNVSDK---E--ITMKIKSTGAVCSIPHGLVLWSTG 299 (547)
Q Consensus 241 -----------~~-~-~-~~~~~~~~~~l~~~GV--~v~~~~~V~~v~~~---~--v~~~~~~~G~~~~i~~D~vv~a~G 299 (547)
|. + + .++.+++....+..++ .+.+++.|.+++.. . |...+..++ ..+.-+|.|++|+|
T Consensus 72 ~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-~~~~ifd~VvVctG 150 (448)
T KOG1399|consen 72 GYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-IEEEIFDAVVVCTG 150 (448)
T ss_pred cCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-eeEEEeeEEEEccc
Confidence 00 0 1 1567777777777776 67888877777542 2 444442211 23577999999999
Q ss_pred CCCCcch
Q 041537 300 VGTRPAI 306 (547)
Q Consensus 300 ~~~~p~~ 306 (547)
--..|.+
T Consensus 151 h~~~P~~ 157 (448)
T KOG1399|consen 151 HYVEPRI 157 (448)
T ss_pred CcCCCCC
Confidence 6543544
No 425
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.19 E-value=0.054 Score=56.78 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=19.4
Q ss_pred cEEEEcCChhHHHHHHHHHHH
Q 041537 192 HFVIVGGGPTGVEFAAELHDY 212 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~ 212 (547)
+|+||||||.|.-+|..+++.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~ 22 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASA 22 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhC
Confidence 799999999999999999875
No 426
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.17 E-value=0.0048 Score=65.33 Aligned_cols=91 Identities=31% Similarity=0.472 Sum_probs=26.2
Q ss_pred EEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCc------------------------------
Q 041537 193 FVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNS------------------------------ 242 (547)
Q Consensus 193 vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~------------------------------ 242 (547)
|||||||+.|+-.|...++. +.+|.||++.+.+...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~--------------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~ 67 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARA--------------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRL 67 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHT--------------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST
T ss_pred EEEECccHHHHHHHHHHHHC--------------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHH
Confidence 89999999999999999886 7899999988764210
Q ss_pred -------------------ccH-HHHHHHHHHHHhCCcEEEcCceEEEEeCC--e---EEEEeccCCeEEEEeeceEEEc
Q 041537 243 -------------------FDE-RISSFAEKKFQRDGIEVLTECRVVNVSDK--E---ITMKIKSTGAVCSIPHGLVLWS 297 (547)
Q Consensus 243 -------------------~~~-~~~~~~~~~l~~~GV~v~~~~~V~~v~~~--~---v~~~~~~~G~~~~i~~D~vv~a 297 (547)
+++ .....+.+.+++.||++++++.|.++..+ . |.+.+.. | ..++.++.+|=|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~-g-~~~i~A~~~IDa 145 (428)
T PF12831_consen 68 RARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKS-G-RKEIRAKVFIDA 145 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-cccccccccccc
Confidence 000 11113445556789999999999988543 3 4444322 4 446999999999
Q ss_pred cC
Q 041537 298 TG 299 (547)
Q Consensus 298 ~G 299 (547)
||
T Consensus 146 TG 147 (428)
T PF12831_consen 146 TG 147 (428)
T ss_dssp --
T ss_pred cc
Confidence 99
No 427
>PRK06185 hypothetical protein; Provisional
Probab=96.16 E-value=0.061 Score=56.47 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhC-CcEEEcCceEEEEe--CCeE---EEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRD-GIEVLTECRVVNVS--DKEI---TMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~-GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+.+. ||+++.+++++++. ++.+ .+.. .+|+ .++.+|.||.|.|.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~-~~g~-~~i~a~~vI~AdG~ 167 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART-PDGP-GEIRADLVVGADGR 167 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc-CCCc-EEEEeCEEEECCCC
Confidence 3445555555554 89999999999984 3443 3332 2343 24999999999994
No 428
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.15 E-value=0.0074 Score=61.45 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=33.3
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCC--CeEEEEcCCCCCcc
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSS--YDVQVVSPQNYFAF 65 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g--~~Vtlid~~~~~~~ 65 (547)
...++|+|+|||.+||++|++|++.+ ..|||+|..+..++
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 44679999999999999999999655 45778999888654
No 429
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.09 E-value=0.0067 Score=72.11 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=35.4
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCcc
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAF 65 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~ 65 (547)
+...||||||+|.||++||..+++.|.+|+|+||.+..+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 4568999999999999999999999999999999866543
No 430
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.03 E-value=0.075 Score=56.51 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC--C-e---EEEEeccCCeEEEEeeceEEEccCC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVSD--K-E---ITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~-~---v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
..+.+.+.+.+++.||++++++.|+++.. + . +.+.+ .+++...+.++.||+|+|-
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCC
Confidence 34566677778889999999999999853 2 2 34443 3355445889999999995
No 431
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.01 E-value=0.071 Score=58.08 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=32.4
Q ss_pred HHHHHHHHhC-CcEEEcCceEEEE--e-CCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 249 SFAEKKFQRD-GIEVLTECRVVNV--S-DKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 249 ~~~~~~l~~~-GV~v~~~~~V~~v--~-~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
..+.+.+++. +++++.+ .+.++ + ++.+......+|.. +.|+.||.|+|..
T Consensus 100 ~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~--I~Ad~VILATGtf 153 (617)
T TIGR00136 100 KAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLK--FRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCE--EECCEEEEccCcc
Confidence 3455566666 7888766 45555 2 33444333344654 9999999999975
No 432
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.92 E-value=0.0046 Score=68.26 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=29.6
Q ss_pred EEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 31 VVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 31 VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
|||||+|.|||+||..+++.|.+|+||||.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999976
No 433
>PRK02106 choline dehydrogenase; Validated
Probab=95.91 E-value=0.0081 Score=65.99 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=32.6
Q ss_pred CCeEEEECCchHHHHHHHhcCC-CCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDV-SSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~-~g~~Vtlid~~~~ 62 (547)
.+|+||||||.||+.+|.+|++ .|++|+|||+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4799999999999999999998 8999999999864
No 434
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.89 E-value=0.0064 Score=66.93 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCeEEEECCchHHHHHHHhcCCC--CCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVS--SYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~--g~~Vtlid~~~~ 62 (547)
..||||||||.|||+||..+++. |.+|+||||...
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~ 40 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 46899999999999999999865 589999999754
No 435
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.89 E-value=0.021 Score=59.46 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=30.6
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCcc
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHI 239 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i 239 (547)
+|+|||||++|+|+|..|++. +.+|+|+++.+..
T Consensus 4 dVvVIGGGlAGleAAlaLAr~--------------Gl~V~LiE~rp~~ 37 (436)
T PRK05335 4 PVNVIGAGLAGSEAAWQLAKR--------------GVPVELYEMRPVK 37 (436)
T ss_pred cEEEECCCHHHHHHHHHHHhC--------------CCcEEEEEccCcc
Confidence 899999999999999999975 7899999977655
No 436
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.84 E-value=0.0086 Score=65.34 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.0
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
...||||||+|.|||+||..+++. .+|+||||...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence 346999999999999999999875 89999999764
No 437
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.82 E-value=0.01 Score=65.32 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=35.9
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTP 67 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p 67 (547)
...+|||||+|.+|+++|..+++.|.+|+|||+++..+...
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 35699999999999999999999999999999987655543
No 438
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.79 E-value=0.017 Score=61.63 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=32.5
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
..++|+|+|+|..|+++|+.|++.|++|+++|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45899999999999999999999999999999875
No 439
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.79 E-value=0.13 Score=55.16 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEe--ccCCeEEEEeeceEEEccCC
Q 041537 247 ISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKI--KSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 247 ~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~--~~~G~~~~i~~D~vv~a~G~ 300 (547)
+...+.+.+++.|++++++++|+++. ++.++... ..+|+...+.++.||+|+|-
T Consensus 133 l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 133 LVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 34455566678899999999999885 34443221 12344446899999999994
No 440
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.77 E-value=0.042 Score=59.90 Aligned_cols=128 Identities=23% Similarity=0.319 Sum_probs=84.9
Q ss_pred ccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------Ccc-----cHHHHHHHHHHHHhC
Q 041537 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL-------NSF-----DERISSFAEKKFQRD 258 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~~-----~~~~~~~~~~~l~~~ 258 (547)
.++||||.|..|.-+..++.+... ....||++-..+++- +-+ -+++.-.-.+..+++
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~-----------~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~ 72 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAP-----------DLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEEN 72 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCc-----------ccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHc
Confidence 389999999999999988887432 246788877666531 111 123344445677899
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCCCcchHHHHHHhCC-CCCccEEeCCCCCcCCCCCEEE
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ-GKRRVLATNEWLRVKECENVYA 337 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~-~~~g~i~Vd~~l~~~~~~~Vfa 337 (547)
||+++++.+|..++.+.-.+.+ +.|.. +.+|-+|+||| ..|++.. ++- +..+ +. .+| +.+++++
T Consensus 73 ~i~L~~~~~v~~idr~~k~V~t-~~g~~--~~YDkLilATG--S~pfi~P----iPG~~~~~-v~---~~R--~i~D~~a 137 (793)
T COG1251 73 GITLYTGEKVIQIDRANKVVTT-DAGRT--VSYDKLIIATG--SYPFILP----IPGSDLPG-VF---VYR--TIDDVEA 137 (793)
T ss_pred CcEEEcCCeeEEeccCcceEEc-cCCcE--eecceeEEecC--ccccccC----CCCCCCCC-ee---EEe--cHHHHHH
Confidence 9999999999999876544433 34775 99999999999 6664421 211 1111 11 122 3677888
Q ss_pred eCccCcc
Q 041537 338 LGDCATI 344 (547)
Q Consensus 338 iGD~a~~ 344 (547)
++||+..
T Consensus 138 m~~~ar~ 144 (793)
T COG1251 138 MLDCARN 144 (793)
T ss_pred HHHHHhc
Confidence 8888554
No 441
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.75 E-value=0.11 Score=55.40 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.8
Q ss_pred ccEEEEcCChhHHHHHHHHHHH
Q 041537 191 LHFVIVGGGPTGVEFAAELHDY 212 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~ 212 (547)
..|+||||||.|.-+|..|++.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~ 61 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKG 61 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhC
Confidence 3899999999999999998875
No 442
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.70 E-value=0.019 Score=58.17 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=66.3
Q ss_pred CCCeEEEECCchHHHHHHHhcC----CCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEE
Q 041537 27 EKKRVVLLGTGWAGISFLKDLD----VSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEA 102 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~----~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 102 (547)
.+++|-|||+|+-|-..|..|. ..|.+|.-+=.+.+. ....+|++ +..+-.+-+++.|++|+ -++
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n-m~kiLPey---------ls~wt~ekir~~GV~V~-pna 414 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN-MEKILPEY---------LSQWTIEKIRKGGVDVR-PNA 414 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC-hhhhhHHH---------HHHHHHHHHHhcCceec-cch
Confidence 4578999999999999998886 356776655444431 11233333 33333445566775553 466
Q ss_pred EEEEEECCCCEE--EEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 103 EAIKIDAAKNEV--FCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 103 ~v~~id~~~~~v--~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
.|.++-...+.+ .+.+ |. ++..|.+|+|+|..||.-
T Consensus 415 ~v~sv~~~~~nl~lkL~d----G~---~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 415 KVESVRKCCKNLVLKLSD----GS---ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred hhhhhhhhccceEEEecC----CC---eeeeeeEEEEecCCCchh
Confidence 777765555544 4444 65 999999999999998754
No 443
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.68 E-value=0.0094 Score=69.10 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=32.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
...||||||||.|||+||..+++.|.+|+||||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999998653
No 444
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.65 E-value=0.15 Score=53.18 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=35.7
Q ss_pred HHHHHHHHHh-CCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 248 SSFAEKKFQR-DGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 248 ~~~~~~~l~~-~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
.+.+.+.+.+ .|++++.+++|+++.. +++.+.. .+|.. +.+|.||.|.|..
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~~ 168 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTL-DDGET--LTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCCC
Confidence 3444555555 4899999999999853 4455543 34654 8999999999953
No 445
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.61 E-value=0.11 Score=55.52 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCcEEEcCceEEEE--eC-CeEEEEeccCCeEEEEeeceEEEccCC
Q 041537 249 SFAEKKFQRDGIEVLTECRVVNV--SD-KEITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 249 ~~~~~~l~~~GV~v~~~~~V~~v--~~-~~v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+.+.+..++.||+++.++ |..+ ++ +.|......+|++ +.+|.+|=|+|.
T Consensus 158 ~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~--i~ad~~IDASG~ 209 (454)
T PF04820_consen 158 QFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRT--IEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEE--EEESEEEE-SGG
T ss_pred HHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCE--EEEeEEEECCCc
Confidence 345566678899999885 5554 33 3454444445765 999999999995
No 446
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.58 E-value=0.0099 Score=64.65 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=32.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
.+.||||||||.|||.||..++..|.+|+|+||.+.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 467999999999999999999999999999998543
No 447
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.013 Score=57.63 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
+...|-|||||.||-.+|+++++.|..|.|.|-++
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 35679999999999999999999999999999654
No 448
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.56 E-value=0.15 Score=45.74 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=25.2
Q ss_pred EEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecC
Q 041537 194 VIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSG 236 (547)
Q Consensus 194 vVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 236 (547)
+|||+|++|+-++..|.+.. ......+|+++++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~---------~~~~~~~I~vfd~~ 34 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA---------DPKPPLEITVFDPS 34 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc---------CCCCCCEEEEEcCC
Confidence 58999999999999988763 00135677777764
No 449
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.51 E-value=0.012 Score=63.86 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=29.5
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
..||||||+|.|||+||..++ +.+|+|||+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 579999999999999999997 569999999764
No 450
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.42 E-value=0.022 Score=54.29 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=58.7
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCc-----
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTEC----- 266 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~----- 266 (547)
+++|||||..|+.+|..|+.+. +..+|.|+..++-+-. -.-.+.+-++|++..|+=..-+
T Consensus 1 kfivvgggiagvscaeqla~~~------------psa~illitass~vks---vtn~~~i~~ylekfdv~eq~~~elg~~ 65 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKS---VTNYQKIGQYLEKFDVKEQNCHELGPD 65 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHH---HhhHHHHHHHHHhcCccccchhhhccc
Confidence 4789999999999999999873 4579999998864421 1222334455655554321110
Q ss_pred ------eEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCCCCC
Q 041537 267 ------RVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGVGTR 303 (547)
Q Consensus 267 ------~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~ 303 (547)
+|..++ ...+++.+ |++ +.++.+++|+|.+|.
T Consensus 66 f~~~~~~v~~~~s~ehci~t~~---g~~--~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 66 FRRFLNDVVTWDSSEHCIHTQN---GEK--LKYFKLCLCTGYKPK 105 (334)
T ss_pred HHHHHHhhhhhccccceEEecC---Cce--eeEEEEEEecCCCcc
Confidence 122222 23355544 876 999999999996544
No 451
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.016 Score=57.19 Aligned_cols=104 Identities=26% Similarity=0.374 Sum_probs=71.4
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEE---
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWE--- 101 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~--- 101 (547)
+..+-+-+|||||+.+|.||-.|..-|++|||.=|+-- +..+ .+++.+.+...+..+| +.|+.
T Consensus 195 ~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~------LrGF------Dqdmae~v~~~m~~~G--ikf~~~~v 260 (503)
T KOG4716|consen 195 PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL------LRGF------DQDMAELVAEHMEERG--IKFLRKTV 260 (503)
T ss_pred cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEee------cccc------cHHHHHHHHHHHHHhC--Cceeeccc
Confidence 34456889999999999999999999999999877521 1111 2466777788888888 54543
Q ss_pred -EEEEEEECCCCEEEEecCCCCCCceeeeecCEEEEccCCCccC
Q 041537 102 -AEAIKIDAAKNEVFCKSNIDKETRDFSLEYDYLIIAVGAQVNT 144 (547)
Q Consensus 102 -~~v~~id~~~~~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~ 144 (547)
.+|+.++...-.|...+.. .+++.+-.||.+++|.|..+..
T Consensus 261 p~~Veq~~~g~l~v~~k~t~--t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 261 PERVEQIDDGKLRVFYKNTN--TGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred ceeeeeccCCcEEEEeeccc--ccccccchhhhhhhhhccccch
Confidence 4566666544344444322 2223367899999999987643
No 452
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.37 E-value=0.071 Score=51.34 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=29.9
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCcc
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHI 239 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i 239 (547)
+|+|||+|..|+-+|..|+.. +.+|++++++..+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a--------------G~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA--------------GREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc--------------CcEEEEEEcCCCc
Confidence 799999999999999999875 6899999988644
No 453
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.36 E-value=0.16 Score=56.68 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCC--cEEEcCceEEEEeCC-----eEE--EEecc---CCeEEEEeeceEEEccCCCCCcchHHH
Q 041537 246 RISSFAEKKFQRDG--IEVLTECRVVNVSDK-----EIT--MKIKS---TGAVCSIPHGLVLWSTGVGTRPAIKDF 309 (547)
Q Consensus 246 ~~~~~~~~~l~~~G--V~v~~~~~V~~v~~~-----~v~--~~~~~---~G~~~~i~~D~vv~a~G~~~~p~~~~l 309 (547)
.+.+.+.+.+.+.| |++..++++++++.+ .|+ +.+.+ +|+.+++.||.||-|=| .+..+...
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDG--a~S~VR~~ 215 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDG--ARSRVRKA 215 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCC--CchHHHHh
Confidence 35566677777766 578889999998632 243 43321 35444699999999999 56555443
No 454
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.35 E-value=0.018 Score=47.86 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=31.6
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
+.++|+|||||..|..-+..|.+.|.+|+||++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 56899999999999999999999999999999863
No 455
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.32 E-value=0.21 Score=54.07 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEeC--Ce--EEEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVSD--KE--ITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~--v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+...+....++.|++++.+++|+++.. +. +.+.+.. |++.++.++.||.|+|.
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~-g~~~~i~a~~VVnAaG~ 213 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDAD-GETRTVRARALVNAAGP 213 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCC-CCEEEEEecEEEECCCc
Confidence 3344455667789999999999998853 22 3333322 55456999999999994
No 456
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.29 E-value=0.02 Score=62.46 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=33.8
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
...+|+||||+|+||-.+|..|+..|++|+|+|....
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 4568999999999999999999999999999998853
No 457
>PRK08275 putative oxidoreductase; Provisional
Probab=95.25 E-value=0.23 Score=54.56 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEe---CCeEE---EEeccCCeEEEEeeceEEEccCCC
Q 041537 247 ISSFAEKKFQRDGIEVLTECRVVNVS---DKEIT---MKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 247 ~~~~~~~~l~~~GV~v~~~~~V~~v~---~~~v~---~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
+.+.+.+.+++.||+++.++.++++. ++.+. ..+..+|+...+.++.||+|||-.
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 44555666677899999999999984 23332 333335665568999999999963
No 458
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.23 E-value=0.17 Score=56.19 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=29.0
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGD 237 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 237 (547)
++..+|+|||||+.|+-+|..|.+. +.+|+++|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~--------------Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK--------------GFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc--------------CCeEEEEeccc
Confidence 4557999999999999999999975 56666666643
No 459
>PRK07121 hypothetical protein; Validated
Probab=95.16 E-value=0.25 Score=53.45 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEeC--C-eEEEE-eccCCeEEEEee-ceEEEccCC
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVSD--K-EITMK-IKSTGAVCSIPH-GLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~-~v~~~-~~~~G~~~~i~~-D~vv~a~G~ 300 (547)
.+.+.+.+.+++.|+++++++.++++.. + .+.-. ...+++...+.+ +.||+|+|-
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 3555666677788999999999999842 2 33311 112354446888 999999994
No 460
>PLN02985 squalene monooxygenase
Probab=95.15 E-value=0.25 Score=53.57 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhC-CcEEEcCceEEEE-eCCe----EEEEeccCCeEEEEeeceEEEccCC
Q 041537 246 RISSFAEKKFQRD-GIEVLTECRVVNV-SDKE----ITMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 246 ~~~~~~~~~l~~~-GV~v~~~~~V~~v-~~~~----v~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.+.+.+.+.+++. +|+++.++ ++++ ++++ |++.. .+|++.++.+|+||-|.|.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~gt-vv~li~~~~~v~gV~~~~-~dG~~~~~~AdLVVgADG~ 206 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEGT-VKSLIEEKGVIKGVTYKN-SAGEETTALAPLTVVCDGC 206 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEeee-EEEEEEcCCEEEEEEEEc-CCCCEEEEECCEEEECCCC
Confidence 3445555555555 68888664 4444 3332 34432 3466556789999999994
No 461
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.13 E-value=0.02 Score=62.51 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.4
Q ss_pred eEEEECCchHHHHHHHhcCCCC-CeEEEEcCCCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSS-YDVQVVSPQNY 62 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtlid~~~~ 62 (547)
|+||||||.||+.+|.+|++.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999877 79999999864
No 462
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.10 E-value=0.025 Score=55.80 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=33.2
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
...+|+|||+|.|||.+|..|+..|.+|+++|+++.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 457999999999999999999999999999998765
No 463
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.02 E-value=0.01 Score=54.68 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=32.3
Q ss_pred CeEEEECCchHHHHHHHhcC--CCCCeEEEEcCCCCCccC
Q 041537 29 KRVVLLGTGWAGISFLKDLD--VSSYDVQVVSPQNYFAFT 66 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~--~~g~~Vtlid~~~~~~~~ 66 (547)
.+|||||+|.+||++|+.+. ++..+|.+||.+-..++.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG 116 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG 116 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence 48999999999999999997 677899999987654443
No 464
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=94.93 E-value=0.05 Score=53.00 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.4
Q ss_pred CCCeEEEECCchHHHHHHHhcCC-------CCCeEEEEcCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDV-------SSYDVQVVSPQ 60 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~-------~g~~Vtlid~~ 60 (547)
++++|+|||+|..||++|..|.+ +..+|++++.+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 46799999999999999966643 44789999754
No 465
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.75 E-value=0.049 Score=41.44 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=27.8
Q ss_pred EEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC
Q 041537 195 IVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL 240 (547)
Q Consensus 195 VVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il 240 (547)
|||+|.+|+-+|..|.+. +.+|+++|+.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~--------------g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--------------GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--------------TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC--------------CCcEEEEecCcccC
Confidence 899999999999999874 68999999998764
No 466
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.74 E-value=0.037 Score=52.17 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=32.0
Q ss_pred CCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 27 EKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 27 ~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
..++|+|||||..|..-+..|.+.|.+||||+++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45799999999999999999999999999999863
No 467
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.73 E-value=0.25 Score=51.74 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=27.9
Q ss_pred ccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCc
Q 041537 191 LHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH 238 (547)
Q Consensus 191 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~ 238 (547)
++|+|||+|++|+.+|..|....+ +...|+++++.++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~-----------~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPR-----------PSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-----------CCCceEEeccccc
Confidence 389999999999999999987532 2233777776654
No 468
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.70 E-value=0.041 Score=49.54 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=31.6
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ 60 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~ 60 (547)
...++|+|||||-.|..-+..|.+.|++|+||+++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 45689999999999999999999999999999754
No 469
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=94.59 E-value=0.034 Score=57.08 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=39.7
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhcc
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCG 75 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g 75 (547)
.+.+|+||||+|+.||.||.+|++.|.+|.+.|++...++......+..|
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpG 61 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPG 61 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccc
Confidence 45689999999999999999999999999999998555554433333333
No 470
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.43 E-value=0.032 Score=50.23 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=30.2
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
||.|||||..|.++|..|+..|++|+|..+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999874
No 471
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.38 E-value=0.37 Score=48.87 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=53.9
Q ss_pred hhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CeEEEEeccCCeEEEEeeceE
Q 041537 217 LINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVSD--KEITMKIKSTGAVCSIPHGLV 294 (547)
Q Consensus 217 ~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~v 294 (547)
+.+.+|.+.++..--++.+....+ -+..+...+.+.+++.|++++.++.|++++. +.+....+.+|. +.+|.|
T Consensus 111 ~~~~~p~l~~~~~~g~~~~~~g~v--~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~---~~a~~v 185 (337)
T TIGR02352 111 LRRLEPYLSGGIRGAVFYPDDAHV--DPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGD---VQADQV 185 (337)
T ss_pred HHHhCCCCCcccceEEEcCCCceE--ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCE---EECCEE
Confidence 344556554333334444433222 2457888888999999999999999999864 445433334453 899999
Q ss_pred EEccCCCC
Q 041537 295 LWSTGVGT 302 (547)
Q Consensus 295 v~a~G~~~ 302 (547)
|+|+|...
T Consensus 186 V~a~G~~~ 193 (337)
T TIGR02352 186 VLAAGAWA 193 (337)
T ss_pred EEcCChhh
Confidence 99999533
No 472
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.32 E-value=0.019 Score=56.23 Aligned_cols=97 Identities=15% Similarity=0.320 Sum_probs=58.3
Q ss_pred ccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC--Ccc---cHHHHHHHH-----HHHHhC
Q 041537 189 RNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL--NSF---DERISSFAE-----KKFQRD 258 (547)
Q Consensus 189 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il--~~~---~~~~~~~~~-----~~l~~~ 258 (547)
+.-+|+|||||.-|+-+|..+.+.+. .-+|-+|++.+... |.+ +..+..... ..|--.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~------------~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~ 105 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLG------------SGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPK 105 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcC------------CCceEEecchhhcccCcceEEeccchhhhhhccCcccccccC
Confidence 34489999999999999999887642 35888888876532 211 111111000 001111
Q ss_pred CcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 259 GIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 259 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
|.+.+. .+|++.+++.-++.. ++|++ |.+|.+|+|+|+.
T Consensus 106 ~a~wi~-ekv~~f~P~~N~v~t-~gg~e--IsYdylviA~Giq 144 (446)
T KOG3851|consen 106 GATWIK-EKVKEFNPDKNTVVT-RGGEE--ISYDYLVIAMGIQ 144 (446)
T ss_pred CcHHHH-HHHHhcCCCcCeEEc-cCCcE--EeeeeEeeeeece
Confidence 222222 467777765433332 23776 9999999999974
No 473
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.22 Score=46.60 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=63.6
Q ss_pred cEEEEcCChhHHHHHHHHHHHH-HHhhhh-hC-CCCCCCceEEEEecCCccCCc-----ccHHHHHHHHHHHHhCCcEEE
Q 041537 192 HFVIVGGGPTGVEFAAELHDYI-QEDLIN-LY-PTVKDLVRITLIQSGDHILNS-----FDERISSFAEKKFQRDGIEVL 263 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~-~~~~~~-~~-~~~~~~~~V~lv~~~~~il~~-----~~~~~~~~~~~~l~~~GV~v~ 263 (547)
+|+|||.||.+.-.|..+++.- +..+.. .+ ..+.++-+.+--..-+.+ |. .++++.+...+.-++.|-+++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNf-PGFPdgi~G~~l~d~mrkqs~r~Gt~i~ 88 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENF-PGFPDGITGPELMDKMRKQSERFGTEII 88 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccC-CCCCcccccHHHHHHHHHHHHhhcceee
Confidence 8999999999998888777641 000100 00 112233333322222221 33 357888888999999999998
Q ss_pred cCceEEEEeCCe--EEEEeccCCeEEEEeeceEEEccCCCCC
Q 041537 264 TECRVVNVSDKE--ITMKIKSTGAVCSIPHGLVLWSTGVGTR 303 (547)
Q Consensus 264 ~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vv~a~G~~~~ 303 (547)
+.+ |..++-.+ .++.. +.+. +.+|.||+|+|....
T Consensus 89 tEt-Vskv~~sskpF~l~t--d~~~--v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 89 TET-VSKVDLSSKPFKLWT--DARP--VTADAVILATGASAK 125 (322)
T ss_pred eee-hhhccccCCCeEEEe--cCCc--eeeeeEEEeccccee
Confidence 764 55554332 33332 1332 899999999996443
No 474
>PLN02785 Protein HOTHEAD
Probab=94.31 E-value=0.048 Score=59.95 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=32.2
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
...+|+||||||.||+.+|..|.+ +++|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 345899999999999999999998 689999999864
No 475
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.04 E-value=0.061 Score=50.62 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQ 60 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~ 60 (547)
...++|+|||||-.|...|..|.+.|++|+||+++
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 34679999999999999999999999999999874
No 476
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.00 E-value=0.055 Score=55.14 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=30.4
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCC
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILN 241 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~ 241 (547)
.|+|||||+.|+-+|..|++. +.+|+++++.+.+.+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~--------------G~~v~i~E~~~~~~~ 38 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA--------------GIDVTIIERRPDPRP 38 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--------------TCEEEEEESSSSCCC
T ss_pred eEEEECCCHHHHHHHHHHHhc--------------ccccccchhcccccc
Confidence 799999999999999999986 789999999987643
No 477
>PRK06175 L-aspartate oxidase; Provisional
Probab=93.99 E-value=0.62 Score=49.43 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHh-CCcEEEcCceEEEEe--CCeEEE-EeccCCeEEEEeeceEEEccCC
Q 041537 245 ERISSFAEKKFQR-DGIEVLTECRVVNVS--DKEITM-KIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 245 ~~~~~~~~~~l~~-~GV~v~~~~~V~~v~--~~~v~~-~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
..+.+.+.+.+++ .||++++++.++++. ++.+.- ....+++...+.++.||+|+|-
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 3455666666665 599999999999973 343321 1112354445899999999994
No 478
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.97 E-value=0.51 Score=51.64 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEe--CCe-EE---EEeccCCeEEEEeeceEEEccCC
Q 041537 247 ISSFAEKKFQRDGIEVLTECRVVNVS--DKE-IT---MKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 247 ~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~-v~---~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
+.+.+.+.+++.||++++++.++++. +++ +. ..+..+|+...+.++.||+|||-
T Consensus 136 i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 136 MMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 44445556667899999999999873 333 43 22223566556899999999995
No 479
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=93.86 E-value=0.15 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.5
Q ss_pred cEEEEcCChhHHHHHHHHHHHH
Q 041537 192 HFVIVGGGPTGVEFAAELHDYI 213 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~ 213 (547)
.|+|||||..|+|.|...+++.
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG 27 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMG 27 (621)
T ss_pred ceEEECCCccchHHHHhhhccC
Confidence 7999999999999999999874
No 480
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.82 E-value=0.11 Score=51.80 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=65.8
Q ss_pred CCCCCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCCCccCCChhhhhccccCccccchhHHHHHHhCCCcEEEEEEEE
Q 041537 25 EREKKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIAEPVRNIIKKRNAEIQFWEAEA 104 (547)
Q Consensus 25 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~~~~~p~l~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 104 (547)
...+++++|||||+.++..|--++..|.++.|+=|.+...-. + .+.+...+.+.+...+++++ -+..+
T Consensus 186 ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-----F------D~~i~~~v~~~~~~~ginvh-~~s~~ 253 (478)
T KOG0405|consen 186 EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-----F------DEMISDLVTEHLEGRGINVH-KNSSV 253 (478)
T ss_pred hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-----h------hHHHHHHHHHHhhhcceeec-ccccc
Confidence 346789999999999999999999999999999887653210 0 02233344555666675443 24445
Q ss_pred EEEECCCC---EEEEecCCCCCCceeeeecCEEEEccCCCccCC
Q 041537 105 IKIDAAKN---EVFCKSNIDKETRDFSLEYDYLIIAVGAQVNTF 145 (547)
Q Consensus 105 ~~id~~~~---~v~~~~~~~~g~~~~~i~yD~LViAtG~~~~~~ 145 (547)
+.+..... .+..+. +. ....|.|+.|+|..|+.-
T Consensus 254 ~~v~K~~~g~~~~i~~~----~~---i~~vd~llwAiGR~Pntk 290 (478)
T KOG0405|consen 254 TKVIKTDDGLELVITSH----GT---IEDVDTLLWAIGRKPNTK 290 (478)
T ss_pred eeeeecCCCceEEEEec----cc---cccccEEEEEecCCCCcc
Confidence 54433222 222222 32 445999999999988654
No 481
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.68 E-value=0.78 Score=49.51 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHh-CCcEEEcCceEEEEe--CCeEE---EEeccCCeEEEEeeceEEEccCCCC
Q 041537 246 RISSFAEKKFQR-DGIEVLTECRVVNVS--DKEIT---MKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 246 ~~~~~~~~~l~~-~GV~v~~~~~V~~v~--~~~v~---~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
.+.+.+.+.+++ .||+++.++.++++. ++.+. +.+ .++...+.++.||+|+|-..
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~--~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWN--RETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEE--CCcEEEEEcCEEEECCCccc
Confidence 455566666766 699999999999984 33333 332 23334589999999999643
No 482
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.63 E-value=0.39 Score=49.64 Aligned_cols=82 Identities=12% Similarity=0.200 Sum_probs=58.1
Q ss_pred EEecCCccCCc--ccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCeEEEEeccCCeEEEEeeceEEEccCCCCCcchH--
Q 041537 232 LIQSGDHILNS--FDERISSFAEKKFQRDGIEVLTECRVVNVSDKEITMKIKSTGAVCSIPHGLVLWSTGVGTRPAIK-- 307 (547)
Q Consensus 232 lv~~~~~il~~--~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~~p~~~-- 307 (547)
-.+...++.|. -...+.+.+.+.+++.||++++++.|++|+++...+....++. .+.||.||+|+|-.+.|.+.
T Consensus 71 ~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~--~~~a~~vIlAtGG~s~p~~Gs~ 148 (376)
T TIGR03862 71 FVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQS--TIEADAVVLALGGASWSQLGSD 148 (376)
T ss_pred EECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCce--EEecCEEEEcCCCccccccCCC
Confidence 34555677773 3568889999999999999999999999966544444322223 38999999999976655442
Q ss_pred ----HHHHHhCC
Q 041537 308 ----DFMEQIGQ 315 (547)
Q Consensus 308 ----~l~~~~~~ 315 (547)
.+++++|.
T Consensus 149 g~gy~la~~lGh 160 (376)
T TIGR03862 149 GAWQQVLDQRGV 160 (376)
T ss_pred cHHHHHHHHCCC
Confidence 34555554
No 483
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.62 E-value=0.061 Score=51.54 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=31.0
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
++++|||+|--|.+.|..|.+.|++|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999874
No 484
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=93.56 E-value=0.21 Score=57.03 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=27.7
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCc
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDH 238 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~ 238 (547)
+|+|||||+.|+-+|..|++.. ++.+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecCCC
Confidence 7999999999999999988752 2467777776654
No 485
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=93.51 E-value=1.1 Score=45.83 Aligned_cols=115 Identities=17% Similarity=0.325 Sum_probs=72.9
Q ss_pred cEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC-------------------------------
Q 041537 192 HFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL------------------------------- 240 (547)
Q Consensus 192 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il------------------------------- 240 (547)
.|+|||+||.|+..|.-|..+..+. ..+.+|.+++....+.
T Consensus 78 Dv~IVG~GPAGLsaAIrlKQla~~~--------~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 78 DVVIVGAGPAGLSAAIRLKQLAAKA--------NKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTP 149 (621)
T ss_pred cEEEECCCchhHHHHHHHHHHHHhc--------CCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccc
Confidence 8999999999999999998876432 1245566665543211
Q ss_pred -----------------Cc---cc---------HHHHHHHHHHHHhCCcEEEcCceEEEE---eCCeEEEEec------c
Q 041537 241 -----------------NS---FD---------ERISSFAEKKFQRDGIEVLTECRVVNV---SDKEITMKIK------S 282 (547)
Q Consensus 241 -----------------~~---~~---------~~~~~~~~~~l~~~GV~v~~~~~V~~v---~~~~v~~~~~------~ 282 (547)
|. ++ ..+..++-+..++.||+|+.+....+| +++.|.-..+ .
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k 229 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK 229 (621)
T ss_pred ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence 10 00 145667777888999999999888887 3344432211 1
Q ss_pred CCeE-------EEEeeceEEEccCCCCCcchHHHHHHhCC
Q 041537 283 TGAV-------CSIPHGLVLWSTGVGTRPAIKDFMEQIGQ 315 (547)
Q Consensus 283 ~G~~-------~~i~~D~vv~a~G~~~~p~~~~l~~~~~~ 315 (547)
+|.. .++.+...|+|-|-.. .+.+++.++.++
T Consensus 230 ~G~pKd~FerGme~hak~TifAEGc~G-~Lskqi~kkf~L 268 (621)
T KOG2415|consen 230 DGAPKDTFERGMEFHAKVTIFAEGCHG-SLSKQIIKKFDL 268 (621)
T ss_pred CCCccccccccceecceeEEEeccccc-hhHHHHHHHhCc
Confidence 2211 2588889999999533 345556666555
No 486
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.48 E-value=0.067 Score=57.22 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=31.0
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+|+|||.|.+|+++|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998765
No 487
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.42 E-value=0.35 Score=51.53 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=52.7
Q ss_pred cccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEE
Q 041537 190 NLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVV 269 (547)
Q Consensus 190 ~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~ 269 (547)
.++++|+|+|.+|..+|..|... +.+|+++++.+. +.+ +...+.|.+.|++++.+....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~--------------G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~ 63 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL--------------GAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPE 63 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--------------CCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcch
Confidence 46999999999999999999875 789999988652 122 333355677788876654332
Q ss_pred EEeCCeEEEEeccCCeEEEEeeceEEEccCCC
Q 041537 270 NVSDKEITMKIKSTGAVCSIPHGLVLWSTGVG 301 (547)
Q Consensus 270 ~v~~~~v~~~~~~~G~~~~i~~D~vv~a~G~~ 301 (547)
+ .. -.+|+||.++|+.
T Consensus 64 ~-------------~~---~~~d~vv~~~g~~ 79 (450)
T PRK14106 64 E-------------FL---EGVDLVVVSPGVP 79 (450)
T ss_pred h-------------Hh---hcCCEEEECCCCC
Confidence 0 00 2478899999963
No 488
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=93.32 E-value=0.59 Score=45.57 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=34.2
Q ss_pred HHHHhC-CcEEEcCceEEEEeC--CeEEEEecc--CCeEEEEeeceEEEccCCCCCcchHHHHHHhCC
Q 041537 253 KKFQRD-GIEVLTECRVVNVSD--KEITMKIKS--TGAVCSIPHGLVLWSTGVGTRPAIKDFMEQIGQ 315 (547)
Q Consensus 253 ~~l~~~-GV~v~~~~~V~~v~~--~~v~~~~~~--~G~~~~i~~D~vv~a~G~~~~p~~~~l~~~~~~ 315 (547)
+..++. ||+++.+ .|++|.+ +.+...... .+..+..+.+.+|+++| ||+..|+...++
T Consensus 155 sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaG----PWTskllp~~rI 217 (380)
T KOG2852|consen 155 SEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAG----PWTSKLLPFTRI 217 (380)
T ss_pred HHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecC----CCchhhcccccc
Confidence 333444 5999888 4777753 333222211 12233478899999999 777777554444
No 489
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.12 E-value=0.064 Score=49.73 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=27.4
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
++|.|||.|+.||.+|..|+..|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998754
No 490
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.09 E-value=0.16 Score=51.76 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=27.5
Q ss_pred CCeEEEECCchHHHHHHHhcC----CCCCeEEEEcCCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLD----VSSYDVQVVSPQNYF 63 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~----~~g~~Vtlid~~~~~ 63 (547)
+..|.|||+|-++..+-+.|. ...+++.-|.|++.+
T Consensus 187 ~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf 226 (436)
T COG3486 187 KRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF 226 (436)
T ss_pred CceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC
Confidence 344999999999999988886 345567778887543
No 491
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.31 Score=48.63 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=68.7
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHh--hhhhCCCCCCCceEE---EEecCCccCCcccHHHHHHHHHHHHhCCcEE
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQED--LINLYPTVKDLVRIT---LIQSGDHILNSFDERISSFAEKKFQRDGIEV 262 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~--~~~~~~~~~~~~~V~---lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v 262 (547)
+..-.|+||||||.|--.|-.-++-.-+. ....|.. +|. =|+.--.....-++++...+.+..++..|++
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGG-----QvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDi 283 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG-----QVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDV 283 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCC-----eeccccchhheeccccccchHHHHHHHHHHhhcCchh
Confidence 45568999999999987776666532110 1111211 111 1111111112356889999999999999999
Q ss_pred EcCceEEEEeC----Ce-EEEEeccCCeEEEEeeceEEEccCCCCC
Q 041537 263 LTECRVVNVSD----KE-ITMKIKSTGAVCSIPHGLVLWSTGVGTR 303 (547)
Q Consensus 263 ~~~~~V~~v~~----~~-v~~~~~~~G~~~~i~~D~vv~a~G~~~~ 303 (547)
+...+.+.+++ ++ +.++ +.+|.. +.+.++|++||.+.+
T Consensus 284 mn~qra~~l~~a~~~~~l~ev~-l~nGav--LkaktvIlstGArWR 326 (520)
T COG3634 284 MNLQRASKLEPAAVEGGLIEVE-LANGAV--LKARTVILATGARWR 326 (520)
T ss_pred hhhhhhhcceecCCCCccEEEE-ecCCce--eccceEEEecCcchh
Confidence 98888777765 33 3332 345876 999999999997544
No 492
>PRK08401 L-aspartate oxidase; Provisional
Probab=92.93 E-value=1.4 Score=47.34 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEe--CCeEEEEeccCCeEEEEeeceEEEccCCCC
Q 041537 246 RISSFAEKKFQRDGIEVLTECRVVNVS--DKEITMKIKSTGAVCSIPHGLVLWSTGVGT 302 (547)
Q Consensus 246 ~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vv~a~G~~~ 302 (547)
.+.+.+.+.+++.||+++.+ .++.+. ++.+..... +|+. +.++.||+|||-..
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~--i~a~~VVLATGG~~ 175 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGEL--LKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEE--EEeCeEEECCCcCc
Confidence 45555666667778888765 566553 334432221 3543 89999999999643
No 493
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.91 E-value=0.09 Score=48.51 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.5
Q ss_pred eEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 30 RVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 30 ~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+|.|||+|..|...|..++..|++|+|+|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 689999999999999999999999999998754
No 494
>PRK07804 L-aspartate oxidase; Provisional
Probab=92.91 E-value=1.3 Score=48.53 Aligned_cols=56 Identities=13% Similarity=0.241 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe--CC-e---EEEEec---cCCeEEEEeeceEEEccCC
Q 041537 245 ERISSFAEKKFQRDGIEVLTECRVVNVS--DK-E---ITMKIK---STGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 245 ~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~-~---v~~~~~---~~G~~~~i~~D~vv~a~G~ 300 (547)
..+...+.+.+++.||+++.++.++++. ++ . +.+.+. .++....+.++.||.|+|-
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 3455566667777889999999999884 22 2 333311 1122335899999999995
No 495
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.88 E-value=0.23 Score=50.61 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=30.7
Q ss_pred CeEEEECCchHHHHHHHhcCCCCCeEEEEcCCC
Q 041537 29 KRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQN 61 (547)
Q Consensus 29 ~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~ 61 (547)
++|.|||.|+.||..+.-|++.|++|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999764
No 496
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.82 E-value=0.13 Score=55.27 Aligned_cols=39 Identities=18% Similarity=0.468 Sum_probs=34.5
Q ss_pred hccccEEEEcCChhHHHHHHHHHHHHHHhhhhhCCCCCCCceEEEEecCCccC
Q 041537 188 KRNLHFVIVGGGPTGVEFAAELHDYIQEDLINLYPTVKDLVRITLIQSGDHIL 240 (547)
Q Consensus 188 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il 240 (547)
.+.++|+|||+|.+|+-+|..|.++ +.+|+++|+.+++.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~--------------G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF--------------GFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc--------------CCceEEEeccCCcC
Confidence 3446999999999999999999997 68999999999874
No 497
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.70 E-value=1 Score=49.05 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=63.5
Q ss_pred hhhhhCCCCCCCceEEEEecCCccCCcccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCe---EEEEeccCCeEEEEe
Q 041537 216 DLINLYPTVKDLVRITLIQSGDHILNSFDERISSFAEKKFQRDGIEVLTECRVVNVS--DKE---ITMKIKSTGAVCSIP 290 (547)
Q Consensus 216 ~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~l~~~GV~v~~~~~V~~v~--~~~---v~~~~~~~G~~~~i~ 290 (547)
.+.+.+|.+.++..--+... +..+ -+..+...+.+.+++.|++++++++|+++. ++. +++.+..+|+..++.
T Consensus 102 e~~~~~P~l~~~~~ga~~~~-dg~v--dp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~ 178 (516)
T TIGR03377 102 EALRLEPNLNPDLIGAVKVP-DGTV--DPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIE 178 (516)
T ss_pred HHHHHCCCCChhheEEEEeC-CcEE--CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEE
Confidence 34555677654433334433 2222 245677777888899999999999999985 344 344443446544599
Q ss_pred eceEEEccCCCCCcchHHHHHHhC----C-CCCcc-EEeCC
Q 041537 291 HGLVLWSTGVGTRPAIKDFMEQIG----Q-GKRRV-LATNE 325 (547)
Q Consensus 291 ~D~vv~a~G~~~~p~~~~l~~~~~----~-~~~g~-i~Vd~ 325 (547)
++.||.|+|. +...+....+ + ..+|. +.++.
T Consensus 179 a~~VVnAaG~----wa~~l~~~~g~~~~i~p~kG~~lv~~~ 215 (516)
T TIGR03377 179 AQVVINAAGI----WAGRIAEYAGLDIRMFPAKGALLIMNH 215 (516)
T ss_pred cCEEEECCCc----chHHHHHhcCCCCceecceEEEEEECC
Confidence 9999999994 4445544333 2 34553 44553
No 498
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=92.44 E-value=1.3 Score=49.16 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCcEEEcCceEEEEe--CC-eE---EEEeccCCeEEEEeeceEEEccCC
Q 041537 258 DGIEVLTECRVVNVS--DK-EI---TMKIKSTGAVCSIPHGLVLWSTGV 300 (547)
Q Consensus 258 ~GV~v~~~~~V~~v~--~~-~v---~~~~~~~G~~~~i~~D~vv~a~G~ 300 (547)
.||+++.++.++++. ++ .| .+.+..+|+...+.++.||+|||-
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 379999999999873 33 33 333323465556899999999985
No 499
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.37 E-value=0.13 Score=44.99 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.6
Q ss_pred CCCCeEEEECCchHHHHHHHhcCCCCCe-EEEEcCC
Q 041537 26 REKKRVVLLGTGWAGISFLKDLDVSSYD-VQVVSPQ 60 (547)
Q Consensus 26 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~-Vtlid~~ 60 (547)
-..++|+|||+|-+|-.++.+|...|++ |+|+.|+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3468999999999999999999988987 9999986
No 500
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.16 E-value=0.13 Score=54.18 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=32.2
Q ss_pred CCeEEEECCchHHHHHHHhcCCCCCeEEEEcCCCC
Q 041537 28 KKRVVLLGTGWAGISFLKDLDVSSYDVQVVSPQNY 62 (547)
Q Consensus 28 ~~~VvIIGgG~aGl~aA~~L~~~g~~Vtlid~~~~ 62 (547)
+++|.|||.|+.|+..|..|++.|++|+++|+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998754
Done!