BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041538
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
           Family Transporter.
 pdb|2XUT|B Chain B, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
           Family Transporter.
 pdb|2XUT|C Chain C, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
           Family Transporter
          Length = 524

 Score = 37.4 bits (85), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 26  RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITE------GTNVLFFWSAASNFLP 79
           R +P+IIA+EA ER +  G    +  +L     + I E        +V   +     F P
Sbjct: 12  RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71

Query: 80  ILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHA 119
           +LG ++AD + G+Y  I +  +   +G   L    IF H+
Sbjct: 72  LLGGWIADRFFGKYNTILWLSLIYCVGHAFL---AIFEHS 108


>pdb|1LLF|A Chain A, Cholesterol Esterase (Candida Cylindracea) Crystal
           Structure At 1.4a Resolution
 pdb|1LLF|B Chain B, Cholesterol Esterase (Candida Cylindracea) Crystal
           Structure At 1.4a Resolution
          Length = 534

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 37  FERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMI 96
           F+R+++   + ++     R Y +   +G     F S   + LPI+G F A+  V +  ++
Sbjct: 403 FKRISAV--LGDLAFIHARRYFLNHFQGGTKYSFLSKQLSGLPIMGTFHANDIVWQDYLL 460

Query: 97  GFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLL 143
           G G +       + + T + P+   L  ++  + +  S +G+ LM++
Sbjct: 461 GSGSV-IYNNAFIAFATDLDPNTAGLLVNWP-KYTSSSQSGNNLMMI 505


>pdb|1CLE|A Chain A, Structure Of Uncomplexed And Linoleate-Bound Candida
           Cylindracea Cholesterol Esterase
 pdb|1CLE|B Chain B, Structure Of Uncomplexed And Linoleate-Bound Candida
           Cylindracea Cholesterol Esterase
          Length = 534

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 37  FERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMI 96
           F+R+++   + ++     R Y +   +G     F S   + LPI+G F A+  V +  ++
Sbjct: 403 FKRISAV--LGDLAFIHARRYFLNHFQGGTKYSFLSKQLSGLPIMGTFHANDIVWQDYLL 460

Query: 97  GFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLL 143
           G G +       + + T + P+   L  ++  + +  S +G+ LM++
Sbjct: 461 GSGSV-IYNNAFIAFATDLDPNTAGLLVNWP-KYTSSSQSGNNLMMI 505


>pdb|1GZ7|A Chain A, Crystal Structure Of The Closed State Of Lipase 2 From
           Candida Rugosa
 pdb|1GZ7|B Chain B, Crystal Structure Of The Closed State Of Lipase 2 From
           Candida Rugosa
 pdb|1GZ7|C Chain C, Crystal Structure Of The Closed State Of Lipase 2 From
           Candida Rugosa
 pdb|1GZ7|D Chain D, Crystal Structure Of The Closed State Of Lipase 2 From
           Candida Rugosa
          Length = 534

 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 37  FERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMI 96
           F+R+++   + ++   L R Y +   +G     F S   + LP+LG F  +  + +  ++
Sbjct: 403 FKRISA--LLGDLAFTLARRYFLNYYQGGTKYSFLSKQLSGLPVLGTFHGNDIIWQDYLV 460

Query: 97  GFGCI 101
           G G +
Sbjct: 461 GSGSV 465


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,389,191
Number of Sequences: 62578
Number of extensions: 171096
Number of successful extensions: 340
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 6
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)