Query 041538
Match_columns 225
No_of_seqs 109 out of 1274
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.8 3E-19 1E-23 160.2 15.8 170 22-223 9-184 (491)
2 3o7q_A L-fucose-proton symport 99.8 1.6E-17 5.3E-22 146.3 16.5 159 23-213 23-182 (438)
3 2xut_A Proton/peptide symporte 99.8 1.2E-17 4.3E-22 150.9 15.5 171 24-223 10-186 (524)
4 1pw4_A Glycerol-3-phosphate tr 99.7 8.8E-18 3E-22 148.3 9.3 163 25-223 27-194 (451)
5 2gfp_A EMRD, multidrug resista 99.6 9.5E-16 3.2E-20 132.8 11.5 159 30-223 4-162 (375)
6 1pw4_A Glycerol-3-phosphate tr 99.6 1.7E-14 5.7E-19 127.2 14.7 166 26-223 252-421 (451)
7 3o7q_A L-fucose-proton symport 99.5 1.7E-13 5.7E-18 120.5 15.5 162 25-223 257-420 (438)
8 4gc0_A D-xylose-proton symport 99.4 1.7E-12 5.9E-17 115.9 14.0 133 62-210 55-187 (491)
9 2cfq_A Lactose permease; trans 99.4 6E-13 2.1E-17 117.7 8.5 163 26-222 220-386 (417)
10 2cfq_A Lactose permease; trans 99.3 2.8E-13 9.7E-18 119.8 3.0 169 26-223 7-175 (417)
11 2gfp_A EMRD, multidrug resista 99.2 2.2E-12 7.6E-17 111.4 1.2 164 26-222 199-363 (375)
12 4gc0_A D-xylose-proton symport 99.2 4.3E-10 1.5E-14 100.2 14.4 156 26-210 276-431 (491)
13 4aps_A DI-OR tripeptide H+ sym 99.2 9.7E-11 3.3E-15 104.6 9.6 168 28-221 285-457 (491)
14 2xut_A Proton/peptide symporte 97.9 1.6E-06 5.5E-11 77.8 -0.4 64 139-211 404-467 (524)
15 2g9p_A Antimicrobial peptide l 21.7 56 0.0019 16.2 1.7 13 81-94 2-14 (26)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.81 E-value=3e-19 Score=160.16 Aligned_cols=170 Identities=18% Similarity=0.310 Sum_probs=150.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHh-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHhHh-hccchHH
Q 041538 22 KGGIRTLPFIIANEAFERMASTGFMPNMILYLCRE-----YNMKITEGTNVLFFWSAASNFLPILGAFLADS-YVGRYAM 95 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr-~~Grr~~ 95 (225)
++++|.++...+..++..+.+|++..+++.|++++ +|+++.+.+++.+.+.++..++++++|+++|| + ||||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34567788888899999999999999999999998 99999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCC
Q 041538 96 IGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGI 175 (225)
Q Consensus 96 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~ 175 (225)
+..+.++..++.+++.+.. +...+++++++.|++.+...+...++++|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~- 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT-
T ss_pred HHHHHHHHHHHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc-
Confidence 9999999988888777644 345588899999999999999999999999998763
Q ss_pred CccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538 176 KSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA 223 (225)
Q Consensus 176 ~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~ 223 (225)
.|+..++.++...++|..++|.+++++.++.||++.|++.++
T Consensus 143 ------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~ 184 (491)
T 4aps_A 143 ------RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAI 184 (491)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ------cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 378888889999999999999999999998999999987643
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.76 E-value=1.6e-17 Score=146.34 Aligned_cols=159 Identities=13% Similarity=0.067 Sum_probs=129.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538 23 GGIRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT 102 (225)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~ 102 (225)
.+++.+.......+...+........+| ++++++|+++.+.+++.+...+...++.++.|+++||+ ||||++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 3444444455555566665554444444 57789999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538 103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA 182 (225)
Q Consensus 103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 182 (225)
..++.+++..... ..+...+++++++.|++.+...+...+++.|.+|+++
T Consensus 101 ~~~~~~~~~~~~~---------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------- 150 (438)
T 3o7q_A 101 YALGAALFWPAAE---------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS--------- 150 (438)
T ss_dssp HHHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---------
T ss_pred HHHHHHHHHhccc---------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---------
Confidence 9988887743220 1246678999999999999999999999999999866
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhee-cccC
Q 041538 183 LKSYFSWYYVSVSASSMVAVTFIVYIQ-DNLG 213 (225)
Q Consensus 183 r~~~~~~~~~~~~ig~~~g~~l~~~l~-~~~g 213 (225)
|+...++.+...++|..++|.+++++. +..+
T Consensus 151 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 151 GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 899999999999999999999999887 5554
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.75 E-value=1.2e-17 Score=150.95 Aligned_cols=171 Identities=26% Similarity=0.472 Sum_probs=145.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcC------CchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHH
Q 041538 24 GIRTLPFIIANEAFERMASTGFMPNMILYLCREYN------MKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIG 97 (225)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~ 97 (225)
++|.++...+..++..+.+|++..+++.|+++++| +++.+.+++.+...+...++++++|+++||++||||++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34566677788999999999999999999999999 999999999999999999999999999999449999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCc
Q 041538 98 FGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKS 177 (225)
Q Consensus 98 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~ 177 (225)
++.++..++.+++.+.. .+...+++.+++.|++.+...+...+++.|.+|+++|
T Consensus 90 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r--- 143 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK--- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---
T ss_pred HHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---
Confidence 99988888887776543 1345688889999999999999999999999998774
Q ss_pred cchhhHHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538 178 KSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA 223 (225)
Q Consensus 178 ~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~ 223 (225)
+.+.+.+++++...++|..++|.+.+++.++.||++.|++.++
T Consensus 144 ---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~ 186 (524)
T 2xut_A 144 ---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGV 186 (524)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 2245666778999999999999999999888899999987654
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.72 E-value=8.8e-18 Score=148.26 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=137.0
Q ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHH
Q 041538 25 IRTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCL 104 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~ 104 (225)
++.++...+..+......+.+...+|.+.+ ++ .++.+.+++.+...+...++.++.|+++||+ |||+++..+.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 344445555666666666666666665554 66 9999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHH----hhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccch
Q 041538 105 LGMVLLWL----TTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSE 180 (225)
Q Consensus 105 i~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~ 180 (225)
++.+++.+ .. +...+++.+++.|++.+...+...+++.|.+|+++
T Consensus 104 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------- 152 (451)
T 1pw4_A 104 AVMLFMGFVPWATS------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------- 152 (451)
T ss_dssp HHHHHHHHCHHHHS------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-------
T ss_pred HHHHHHHhhhhccc------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-------
Confidence 99888887 44 23458888999999999999999999999999755
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhhc
Q 041538 181 GALKSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPAA 223 (225)
Q Consensus 181 ~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~~ 223 (225)
|++..++.+...++|..++|.+++++.+..| |++.|++.++
T Consensus 153 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~ 194 (451)
T 1pw4_A 153 --RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 194 (451)
T ss_dssp --HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8999999999999999999999999888888 9999987654
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.64 E-value=9.5e-16 Score=132.76 Aligned_cols=159 Identities=17% Similarity=0.210 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHH
Q 041538 30 FIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVL 109 (225)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~ 109 (225)
......+..........+.+|. +.+++|.++.+.+++.+...+...++.++.|+++||+ ||||.+..+.++..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 3444556666666656666665 4568999999999999999999999999999999998 9999999999999888888
Q ss_pred HHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHH
Q 041538 110 LWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSW 189 (225)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~ 189 (225)
+.+.. +...+++.+.+.|++.+...+...+++.|.+|+++ |++.++.
T Consensus 82 ~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 128 (375)
T 2gfp_A 82 AVTTS------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ---------LRHANSL 128 (375)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---------CCSHHHH
T ss_pred HHHhc------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---------HHHHHHH
Confidence 77755 45668889999999999999999999999999866 6778888
Q ss_pred HHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538 190 YYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA 223 (225)
Q Consensus 190 ~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~ 223 (225)
.+...++|..++|.+.+++.++.||++.|.+.++
T Consensus 129 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 129 LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999988899999886543
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.59 E-value=1.7e-14 Score=127.19 Aligned_cols=166 Identities=15% Similarity=0.191 Sum_probs=135.7
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--cchHHHHHHHHHH
Q 041538 26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYV--GRYAMIGFGCITC 103 (225)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~--Grr~~~~~~~~~~ 103 (225)
|.++...+..++....++++..++|.|+++.+|+++.+.+.......++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 556667777788888888899999999999899999999999999999999999999999999 5 8888887776655
Q ss_pred H-HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538 104 L-LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA 182 (225)
Q Consensus 104 ~-i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 182 (225)
. ++..++.+.. ..+.....+...+.+++.+...+....++.|.+|+++
T Consensus 331 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------- 379 (451)
T 1pw4_A 331 VTIATIVYWMNP----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA--------- 379 (451)
T ss_dssp HHHHHHHTTSCC----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---------
T ss_pred HHHHHHHHHHhc----------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---------
Confidence 4 4444333221 1134556666777888888888888899999999855
Q ss_pred HHHHHHHHHHHHhh-hhhhHHHhhhheecccCcchhhhhhhc
Q 041538 183 LKSYFSWYYVSVSA-SSMVAVTFIVYIQDNLGWKVGFGIPAA 223 (225)
Q Consensus 183 r~~~~~~~~~~~~i-g~~~g~~l~~~l~~~~g~~~~f~~~~~ 223 (225)
|++..++++...++ |..++|.+.+++.++.||+..|++.++
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 421 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 421 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 89999999999999 999999999999999999988876553
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.53 E-value=1.7e-13 Score=120.45 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=128.7
Q ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHH-HhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHH
Q 041538 25 IRTLPFIIANEAFERMASTGFMPNMILY-LCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITC 103 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~ 103 (225)
.|.++...+..++.....+....++|.| +++.+|+++.+.+.......+...++.+++|+++||+ |||+.+..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3556666667777777778888999999 8888899999999999999999999999999999997 9999999988888
Q ss_pred HHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhH
Q 041538 104 LLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGAL 183 (225)
Q Consensus 104 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r 183 (225)
.++.+++.+.. +.. ......+.+++.+...+...++..|.+|++ +
T Consensus 336 ~~~~~~~~~~~------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~ 380 (438)
T 3o7q_A 336 MALCLISAFAG------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD----------T 380 (438)
T ss_dssp HHHHHHHHHCC------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG----------H
T ss_pred HHHHHHHHHcC------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------c
Confidence 77776665533 122 233446677888888888999988988862 3
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhheecccC-cchhhhhhhc
Q 041538 184 KSYFSWYYVSVSASSMVAVTFIVYIQDNLG-WKVGFGIPAA 223 (225)
Q Consensus 184 ~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g-~~~~f~~~~~ 223 (225)
+.+.++.. ...+|+.++|.+.|++.+..| ++..|.+.++
T Consensus 381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 420 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44455444 567999999999999999988 9988876543
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.43 E-value=1.7e-12 Score=115.92 Aligned_cols=133 Identities=8% Similarity=-0.031 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccccccccchhHH
Q 041538 62 TEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLM 141 (225)
Q Consensus 62 ~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (225)
.+.+++.+.+.++..+++++.|+++||+ |||+++.++.+++.++.++.++.......... ...-...-..+..
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~------~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP------DNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS------SSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc------hhHHHHHHhhhHH
Confidence 3456778888899999999999999998 99999999999999998888764311100000 0000000123567
Q ss_pred HHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheec
Q 041538 142 LLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQD 210 (225)
Q Consensus 142 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~ 210 (225)
.++++|++.|++.|+..+..+.+++|..|++. |+...++.+....+|..+++.+...+..
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~---------rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI---------RGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG---------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh---------hhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 89999999999999999999999999999855 8998889888888888888777765543
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=6e-13 Score=117.67 Aligned_cols=163 Identities=6% Similarity=-0.010 Sum_probs=111.6
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH
Q 041538 26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMK---ITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT 102 (225)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~ 102 (225)
|..+...+..+.....++....++|.|+++.++.+ ..+.+....+..+...++.++.|+++||+ ||||.+..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 33333333334444445555667888987766532 34445666666677788899999999998 999998887777
Q ss_pred HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538 103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA 182 (225)
Q Consensus 103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 182 (225)
..++..++.+.. +...+.+...+.+++.+...+....+..|.+|++.
T Consensus 299 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--------- 345 (417)
T 2cfq_A 299 MSVRIIGSSFAT------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF--------- 345 (417)
T ss_dssp HHHHHHHHTTCC------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH---------
T ss_pred HHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---------
Confidence 666554443221 22334444455555555555666789999999844
Q ss_pred HHHHHHH-HHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538 183 LKSYFSW-YYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA 222 (225)
Q Consensus 183 r~~~~~~-~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~ 222 (225)
|++..+. ++...++|+.++|.+.|++.++.|++..|.+.+
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 8888888 477788999999999999988888887776544
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=2.8e-13 Score=119.76 Aligned_cols=169 Identities=9% Similarity=-0.019 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538 26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL 105 (225)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i 105 (225)
|..+......+.....+....+++|.|+++++|+++.+.+.+.+...+...+++++.|+++||+ ||||++.++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4555555556666666677789999999999999999999999999999999999999999998 999999988776654
Q ss_pred HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538 106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS 185 (225)
Q Consensus 106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~ 185 (225)
+...+......+. ....+...+.+.+++.+...+...+...+..++.. +.++.
T Consensus 86 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPL--------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-------RRSNF 138 (417)
T ss_dssp CHHHHHHHTHHHH--------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-------HHHTC
T ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-------hhccc
Confidence 3221111000000 00001222333333333333333333433333211 11344
Q ss_pred HHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhhc
Q 041538 186 YFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPAA 223 (225)
Q Consensus 186 ~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~~ 223 (225)
.++..+...++|..++|.+.+++.+ .+|++.|++.++
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~ 175 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG 175 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 4555566789999999999998876 589998886654
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.20 E-value=2.2e-12 Score=111.45 Aligned_cols=164 Identities=9% Similarity=-0.040 Sum_probs=122.6
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHH-HH
Q 041538 26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCIT-CL 104 (225)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~-~~ 104 (225)
|.++...+..++.....+.+..+.|.|+++++|+++.+.+.......++..++.++.++++||+ || +. ..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~~-~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-LM-WQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-HH-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HH-HHHHHHHHH
Confidence 4455566667777777888889999999998999999999999999999999999999999998 77 22 222222 22
Q ss_pred HHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHH
Q 041538 105 LGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALK 184 (225)
Q Consensus 105 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~ 184 (225)
.+..++..... ...+...+++...+.+++.+...+....+..|.+| ++ |+
T Consensus 276 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~---------~g 325 (375)
T 2gfp_A 276 AGLLMWIPDWF--------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL---------AG 325 (375)
T ss_dssp TSSSSSHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH---------HH
T ss_pred HHHHHHHHhhh--------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc---------cc
Confidence 22221111110 01134456667777888888888999999999987 34 89
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhhh
Q 041538 185 SYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIPA 222 (225)
Q Consensus 185 ~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~~ 222 (225)
+..+..+...++|..++|.+.+.+.+..+|...+...+
T Consensus 326 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 326 TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999999988777777776543
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.16 E-value=4.3e-10 Score=100.24 Aligned_cols=156 Identities=8% Similarity=0.040 Sum_probs=105.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHHHHHHHHHH
Q 041538 26 RTLPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIGFGCITCLL 105 (225)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~~~~~~~~i 105 (225)
+.+.......++.....+....+..+++.+..+.+..+.........+...++.++++++.||+ |||+.+..+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444444444443333334444556667788888888888888888999999999999998 999999998888877
Q ss_pred HHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHH
Q 041538 106 GMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKS 185 (225)
Q Consensus 106 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~ 185 (225)
+.+.+....... ......+........+.+.+ ..+..+.+.+|.+|++. |++
T Consensus 355 ~~~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~---------R~~ 406 (491)
T 4gc0_A 355 GMFSLGTAFYTQ------------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAI---------RGK 406 (491)
T ss_dssp HHHHHHHHHHTT------------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTT---------HHH
T ss_pred HHHHHHHHHhcc------------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhH---------HHH
Confidence 777666543111 11122222222222333333 34667789999999966 899
Q ss_pred HHHHHHHHHhhhhhhHHHhhhheec
Q 041538 186 YFSWYYVSVSASSMVAVTFIVYIQD 210 (225)
Q Consensus 186 ~~~~~~~~~~ig~~~g~~l~~~l~~ 210 (225)
+.++.+....+++.+++.+.+.+.+
T Consensus 407 ~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 407 ALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888877654
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=9.7e-11 Score=104.62 Aligned_cols=168 Identities=10% Similarity=0.019 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhHhhccchHHHH-----HHHHH
Q 041538 28 LPFIIANEAFERMASTGFMPNMILYLCREYNMKITEGTNVLFFWSAASNFLPILGAFLADSYVGRYAMIG-----FGCIT 102 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~~~-----~~~~~ 102 (225)
.+...+..+.....+.....+++.|+++.++.+..+.+.......+...++.++.|++.||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 34444455566666777788899999998888877777778888888888999999999997 9886544 55556
Q ss_pred HHHHHHHHHHhhhcCCCCCCccccccccccccccchhHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhh
Q 041538 103 CLLGMVLLWLTTIFPHARPLACDYTLRDSCESATGSQLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGA 182 (225)
Q Consensus 103 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 182 (225)
..++..++........ .....+...+.+...+.+++.+...+....+..|.+|++.
T Consensus 364 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--------- 419 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF--------- 419 (491)
T ss_dssp HHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC---------
T ss_pred HHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---------
Confidence 6666555544321100 0011234556677788888888888889999999999876
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhheecccCcchhhhhh
Q 041538 183 LKSYFSWYYVSVSASSMVAVTFIVYIQDNLGWKVGFGIP 221 (225)
Q Consensus 183 r~~~~~~~~~~~~ig~~~g~~l~~~l~~~~g~~~~f~~~ 221 (225)
|+++.++++...++|..++|.+.+++.+. ++...|...
T Consensus 420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~ 457 (491)
T 4aps_A 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYF 457 (491)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 68888888999999999999999988764 555555543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.87 E-value=1.6e-06 Score=77.82 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHhCcccchhhhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHhhhhhhHHHhhhheecc
Q 041538 139 QLMLLYLAFGLMSLGGGGIRSSSLAFGADQLEKGDGIKSKSEGALKSYFSWYYVSVSASSMVAVTFIVYIQDN 211 (225)
Q Consensus 139 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~l~~~l~~~ 211 (225)
+...+.+..++.+++.+...+....+..|..|++. |+++.++++...++|+.++|.+.+.+.+.
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM---------KGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC---------CTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456667788888888888999999999999866 78889999999999999999999988764
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=21.71 E-value=56 Score=16.21 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=9.9
Q ss_pred HHHHHhHhhccchH
Q 041538 81 LGAFLADSYVGRYA 94 (225)
Q Consensus 81 ~~G~laDr~~Grr~ 94 (225)
+.|.+..++ ||+.
T Consensus 2 lfgklikkf-grka 14 (26)
T 2g9p_A 2 LFGKLIKKF-GRKA 14 (26)
T ss_dssp HHHHHHHHH-TSHH
T ss_pred cHHHHHHHH-hHHH
Confidence 357888998 9874
Done!