Query 041540
Match_columns 456
No_of_seqs 294 out of 729
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1162 Predicted small molecu 100.0 5.7E-98 1E-102 791.8 30.4 317 131-455 269-617 (617)
2 PF03124 EXS: EXS family; Int 100.0 2.4E-74 5.2E-79 588.8 25.8 293 129-423 6-306 (345)
3 COG5409 EXS domain-containing 100.0 4.9E-55 1.1E-59 430.0 16.1 299 131-442 43-379 (384)
4 PF03105 SPX: SPX domain; Int 99.4 5.6E-13 1.2E-17 130.1 7.1 112 1-127 11-123 (275)
5 KOG1161 Protein involved in va 99.0 4E-10 8.7E-15 112.1 5.2 32 96-127 45-76 (310)
6 COG5408 SPX domain-containing 98.3 6.6E-07 1.4E-11 89.1 4.4 28 1-28 11-38 (296)
7 COG5036 SPX domain-containing 97.7 4.2E-05 9.2E-10 78.7 5.7 32 96-127 42-73 (509)
8 COG3872 Predicted metal-depend 39.5 1.5E+02 0.0033 29.7 8.2 91 129-248 150-245 (318)
9 PF11120 DUF2636: Protein of u 36.3 38 0.00083 26.4 2.8 37 211-247 6-42 (62)
10 KOG2150 CCR4-NOT transcription 25.8 1.6E+02 0.0035 32.6 6.4 16 13-28 45-60 (575)
11 cd07347 harmonin_N_like N-term 20.6 76 0.0016 25.9 2.1 26 312-337 23-48 (78)
No 1
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-98 Score=791.83 Aligned_cols=317 Identities=53% Similarity=0.968 Sum_probs=299.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcceEeeecCCCCcchHHHHHHHHHHHHHHHHHHHhhcccccCcchhhhhhhhhhHH
Q 041540 131 FAFIVLHMLMYAVNVYFWRRCRVNYPFIFNIEQGTELGYREVLLVSFGLATFALTSVLSNLDMEMDPKIKEYKALTELLP 210 (456)
Q Consensus 131 ~gl~lL~~~l~g~ni~~W~~~~INY~fIF~~~~~~~l~~~~~~~~a~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~P 210 (456)
+|++++|++|+|.|||+|+++||||+||||+++++++++++++++++..++++.++++.++++++++.+ ++++|
T Consensus 269 ~~~v~l~~fl~~~niy~W~~~rVNy~fIf~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~~~------~~~~P 342 (617)
T KOG1162|consen 269 FGLVVLHKFLYNVNIYEWSRTRVNYKFIFEFDQRTELGYRDILLIHNTNGILEFLPVLKNLDMSMSGQT------TELSP 342 (617)
T ss_pred HHHHHHHHHHhcCchHHHHHhcCCceeeecCCccccccHHHHHHHHHHHHHHHHHHHHHHhccccCCCC------cccch
Confidence 899999999999999999999999999999999999999999999999999999999999998876543 57899
Q ss_pred HHHHHHHHHHHHcccccccchhHHHHHHHhhHhhhcCCccccccchhhhHhhhhHHHHhhhHhhhhheeecCCCccCCCc
Q 041540 211 LGLVLLVIVILICPFNIIFRSSRFFFLASLFHCIAAPLHKVTLQDFFMADQLTSQVQAIRSLGIYICYYGWGDFKRRRNT 290 (456)
Q Consensus 211 l~l~~~~l~~l~~P~~i~~~~~R~~~~~~l~r~l~~p~~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~~~~~~~~ 290 (456)
+++++++++++++|++++|+++|+|+++++.||+.+|+++|.|+|||+|||+||++++++|+++++|+|++|++..++ +
T Consensus 343 l~ll~~~~~~L~~Pf~~fY~sSRf~ll~~l~rvi~spl~~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~~~~~~~~~-~ 421 (617)
T KOG1162|consen 343 LILLLLFFFLLVCPFNTFYRSSRFWLLKRLFRVLSSPLYKVLFVDFFLADQLTSLVLALRDLEFFICYYGTGDFQARR-T 421 (617)
T ss_pred HHHHHHHHheeeccchhhhHhhHHHHHHHHHHHHhccceeeccccccHHHHHHHHHHHHHhHHHhheeeccccccccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877554 6
Q ss_pred cCCCCchhhHHHHHHhhHHHHHHHHHHHHhhhcCCcchhhhHHHHHHHHHHHHHHhhhhccCCc-hhHHHHHHHHHhhhH
Q 041540 291 CHSDDVYNTFYFIVAVIPYWFRFLQCLRRLYEEKDPMQGYNGLKYFVTIIAISTRTACTLYRGF-RWKLISGIFSAIATI 369 (456)
Q Consensus 291 C~~~~~~~~~~~i~~~lP~~iR~~QClRry~dt~~~~hL~Na~KY~~si~~i~~~~~~~~~~~~-~~~~~~i~~~~inSl 369 (456)
|..++.++.+.++++++|+|+|++||+|||.|+++.+||+||+||+++++++.++++|+.+++. .|+.+|++++.+||+
T Consensus 422 ~~~~~~~~~~~~iva~lP~~~RfLQClRR~~d~~~~~hL~NAlKY~~~i~~v~~~~~y~~~~~~~~~~~l~~~~s~vaS~ 501 (617)
T KOG1162|consen 422 CYCKDDYIEFQSIVAVLPYWFRFLQCLRRYRDEKAFPHLLNALKYSTTILAVMLTTLYRILPGSSLWFALWILSSKVASL 501 (617)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 7666667788999999999999999999999998899999999999999999999999998885 999999999999999
Q ss_pred HHHHHHHHhhhccccccCCCccccccccCCCCchhhhHHHHHHHhhhhhhhhhh--------------------------
Q 041540 370 YGTYWDLVVDWGLLQRQSRNRWLRDKLLVPRKSVYFSAMILNVLLRFDWLQTVL-------------------------- 423 (456)
Q Consensus 370 Ys~~WDv~mDWgL~~~~s~~~~LR~~l~y~~~~~Yy~Aiv~n~iLRf~W~~~i~-------------------------- 423 (456)
|+++||++|||||+.++++ ++||++++||+|++||+||+.|++||++|++.++
T Consensus 502 y~~~WDvv~DWgLl~~~~~-~~lRd~l~~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~~~~~~~~~i~a~LEIiRRfi 580 (617)
T KOG1162|consen 502 YTTYWDVVMDWGLLNRKSK-PWLRDNLLYPQKWVYYSAIVLNFVLRFAWFFKTILVFHEEFLSDSMVFIMALLEIIRRFI 580 (617)
T ss_pred HHHHHHHheecccccccCc-hhhHHHhcccchheehhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999 9999999999999999999999999999965543
Q ss_pred -----hhhhhhhccCCceeccccCCCCcCCCcccccC
Q 041540 424 -----LENEHLNNVGKYRAFKSVPLPFSYCEDEEEHD 455 (456)
Q Consensus 424 -----lEnEHl~N~~~fRa~~~iplP~~~~~~~~~~~ 455 (456)
|||||+||||+|||+++||+|++..+|+|+++
T Consensus 581 WnfFRLEnEhlnN~g~fRa~~~v~l~~~~~~~~d~~~ 617 (617)
T KOG1162|consen 581 WNFFRLENEHLNNVGKFRAFRDVPLPFSYMDESDKVS 617 (617)
T ss_pred hHHHHHHHHHHHHHhhccccccCCchhhhcccccCCC
Confidence 99999999999999999999999998888763
No 2
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.4e-74 Score=588.80 Aligned_cols=293 Identities=38% Similarity=0.689 Sum_probs=261.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCcceEeeecCCCCcchHHHHHHHHHHHHHHHHHHHhhcccccCcch-hhhhhhhh
Q 041540 129 DLFAFIVLHMLMYAVNVYFWRRCRVNYPFIFNIEQGTELGYREVLLVSFGLATFALTSVLSNLDMEMDPKI-KEYKALTE 207 (456)
Q Consensus 129 ~~~gl~lL~~~l~g~ni~~W~~~~INY~fIF~~~~~~~l~~~~~~~~a~~l~~~~l~~~l~~l~~~~~~~~-~~~~~~~~ 207 (456)
...+++++++|+||+|+++|+++||||++|||+||+++++++++++++++++++++++++.++........ .......+
T Consensus 6 R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 85 (345)
T PF03124_consen 6 RGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANWYFVE 85 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccchhhHH
Confidence 35788999999999999999999999999999999999999999999998888887777666643322111 11112245
Q ss_pred hHHHHHHHHHHHHHHcccccccchhHHHHHHHhhHhhhcCCccccccchhhhHhhhhHHHHhhhHhhhhheeecCCCccC
Q 041540 208 LLPLGLVLLVIVILICPFNIIFRSSRFFFLASLFHCIAAPLHKVTLQDFFMADQLTSQVQAIRSLGIYICYYGWGDFKRR 287 (456)
Q Consensus 208 ~~Pl~l~~~~l~~l~~P~~i~~~~~R~~~~~~l~r~l~~p~~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~~~~~ 287 (456)
++|+++++++++++++|++++++++|+|++++++|++.+|+.+|+|+|||+||||||++++++|+++++|+|..+.....
T Consensus 86 ~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~~~~~ 165 (345)
T PF03124_consen 86 YIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGSFTSP 165 (345)
T ss_pred HhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998665556
Q ss_pred CCccCCCCchhhHHHHHHhhHHHHHHHHHHHHhhhcCCc-chhhhHHHHHHHHHHHHHHhhhhccCCch----hHHHHHH
Q 041540 288 RNTCHSDDVYNTFYFIVAVIPYWFRFLQCLRRLYEEKDP-MQGYNGLKYFVTIIAISTRTACTLYRGFR----WKLISGI 362 (456)
Q Consensus 288 ~~~C~~~~~~~~~~~i~~~lP~~iR~~QClRry~dt~~~-~hL~Na~KY~~si~~i~~~~~~~~~~~~~----~~~~~i~ 362 (456)
+++|++.+.+ ..++++++|++||++||+|||+||+++ +||.||+||++++++++++..++.+++.. ++.+|++
T Consensus 166 ~~~c~~~~~~--~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~~~~~w~~ 243 (345)
T PF03124_consen 166 SNQCGSSSWY--IDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIWLFILWII 243 (345)
T ss_pred CCcCccccHh--HHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHH
Confidence 7899987654 348999999999999999999999998 99999999999999999998887765533 6788999
Q ss_pred HHHhhhHHHHHHHHHhhhcccccc--CCCccccccccCCCCchhhhHHHHHHHhhhhhhhhhh
Q 041540 363 FSAIATIYGTYWDLVVDWGLLQRQ--SRNRWLRDKLLVPRKSVYFSAMILNVLLRFDWLQTVL 423 (456)
Q Consensus 363 ~~~inSlYs~~WDv~mDWgL~~~~--s~~~~LR~~l~y~~~~~Yy~Aiv~n~iLRf~W~~~i~ 423 (456)
++++||+||++|||+|||||++++ +++++||++++||+|++||+||+.|+++||+|+++++
T Consensus 244 ~~~i~s~Ys~~WDv~~DWgL~~~~~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~ 306 (345)
T PF03124_consen 244 FALINSLYSFYWDVKMDWGLFQPKKKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLS 306 (345)
T ss_pred HHHHHHHHHHHHHHHhcccccCCccccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 7899999999999999999999999999999999875
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-55 Score=430.01 Aligned_cols=299 Identities=29% Similarity=0.431 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcceEeeecCCCC----cchHHHHHHHHHHHHHHHHHHHhhcccccCcchhhhhhhh
Q 041540 131 FAFIVLHMLMYAVNVYFWRRCRVNYPFIFNIEQGTE----LGYREVLLVSFGLATFALTSVLSNLDMEMDPKIKEYKALT 206 (456)
Q Consensus 131 ~gl~lL~~~l~g~ni~~W~~~~INY~fIF~~~~~~~----l~~~~~~~~a~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~ 206 (456)
..+..+...++++++|+|+|.+|||++||.+++.+. ...++-. +.....++..+++.++.+..+.... -...
T Consensus 43 ~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~~~a~~~~~dfh~--~~i~~~~~~~slfiFl~~v~g~~~~--l~~~ 118 (384)
T COG5409 43 WILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLSSTARNFNLDFHR--IIIPFHFFTTSLFIFLNAVEGLKFI--LLFV 118 (384)
T ss_pred HHHHHHHHHHhcCceeeEEeccccchhhhhHhHhhhhhcccchhhHH--HhhhHHHHHHHHHHHHHHhhccccc--eehh
Confidence 445556678889999999999999999999887543 2222221 2222333333333333322211111 1124
Q ss_pred hhHHHHHHHHHHHHHHcccccccchhHHHHHHHhhHhhhcCCccccccchhhhHhhhhHHHHhhhHhhhhheeecCCCcc
Q 041540 207 ELLPLGLVLLVIVILICPFNIIFRSSRFFFLASLFHCIAAPLHKVTLQDFFMADQLTSQVQAIRSLGIYICYYGWGDFKR 286 (456)
Q Consensus 207 ~~~Pl~l~~~~l~~l~~P~~i~~~~~R~~~~~~l~r~l~~p~~~V~F~DfflaDqLtSl~~~l~Dl~~~~C~y~~~~~~~ 286 (456)
.++|+++++.+..++++|+++.++.+|+|++.++.|++.+|...|+|+||++||++||++++++|+..++|.|.... .
T Consensus 119 ~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sliRv~l~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~~~-~- 196 (384)
T COG5409 119 YFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESLIRVFLFGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSLLF-R- 196 (384)
T ss_pred hhccHHHHHHHHHHhhcccceeeecchhhHHHHHHHHHHhccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhhhc-c-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999997432 1
Q ss_pred CCCccCCCCchhhHHHHHHhhHHHHHHHHHHHHhhhcCCc-chhhhHHHHHHHHHHHHHHhhhhccC-CchhHHHHHHHH
Q 041540 287 RRNTCHSDDVYNTFYFIVAVIPYWFRFLQCLRRLYEEKDP-MQGYNGLKYFVTIIAISTRTACTLYR-GFRWKLISGIFS 364 (456)
Q Consensus 287 ~~~~C~~~~~~~~~~~i~~~lP~~iR~~QClRry~dt~~~-~hL~Na~KY~~si~~i~~~~~~~~~~-~~~~~~~~i~~~ 364 (456)
.| -|++++.. +.++++++|.++|++||||||+|+++. |||.||+||++++++.....+|+..+ +...+..+++++
T Consensus 197 ~p-Lc~sshs~--~~g~~~~lP~ivR~lQCLRry~ds~~~fphLlNALKYs~~i~v~~~~~~~r~~~~~~~l~~l~~~~a 273 (384)
T COG5409 197 EP-LCKSSHSD--LSGLAALLPVIVRFLQCLRRYRDSLHEFPHLLNALKYSLNIPVLFCLWLYRVYEGEERLFHLQIWFA 273 (384)
T ss_pred cc-ccccCCcc--hHhHHHhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHhccCcceeehHHHHHH
Confidence 12 58887653 567899999999999999999999875 99999999999999999999999877 455567888899
Q ss_pred HhhhHHHHHHHHHhhhccccccCCC-ccccccccCCCCchhhhHHHHHHHhhhhhhhhhh--------------------
Q 041540 365 AIATIYGTYWDLVVDWGLLQRQSRN-RWLRDKLLVPRKSVYFSAMILNVLLRFDWLQTVL-------------------- 423 (456)
Q Consensus 365 ~inSlYs~~WDv~mDWgL~~~~s~~-~~LR~~l~y~~~~~Yy~Aiv~n~iLRf~W~~~i~-------------------- 423 (456)
.+||+||+.|||.|||++..++++. +-.|+.++++ |++||++|+++|++|+++..
T Consensus 274 ~lnS~yT~~WDV~mDW~l~~~~~~~~~~kr~~~~l~----y~~a~~inFllR~~Wi~~~~~~~~~~~~~~~~~F~m~~lE 349 (384)
T COG5409 274 LLNSIYTSFWDVFMDWSLDSLTSLRSWSKRAVTLLK----YHIAMIINFLLRFSWIVYYLPPNHIQHSADIFIFIMQLLE 349 (384)
T ss_pred HHHHHHHHhHHhheeeeecccccchhccccchhHHH----HHHHHHHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999877655 5567766654 89999999999999998754
Q ss_pred -----------hhhhhhhccCCceeccccC
Q 041540 424 -----------LENEHLNNVGKYRAFKSVP 442 (456)
Q Consensus 424 -----------lEnEHl~N~~~fRa~~~ip 442 (456)
||+||.+|+..+|+.++.|
T Consensus 350 i~RR~vW~~FrveaE~~~n~~~~~~~~~~~ 379 (384)
T COG5409 350 ILRRFVWVFFRVEAEHSINFASFRAAGELK 379 (384)
T ss_pred HHHhheeeEEEeehHHHhhHHHhhhcccCC
Confidence 9999999999999999998
No 4
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=99.38 E-value=5.6e-13 Score=130.07 Aligned_cols=112 Identities=26% Similarity=0.368 Sum_probs=61.9
Q ss_pred CCccchHhhcCchhhHHHHHHHHHHHhhhcccc-ccccchhhhhhccccccCCCCCCCCCCCCCccccceeeccccCCCc
Q 041540 1 MVPEWQEAFMNYDNLKTLLKEVRRIKQRNKQNA-GVNRAMTLCRAFSGLVQGQNNNPISPSKKDIESQYILVNSVTENGF 79 (456)
Q Consensus 1 lVPEW~~aY~~Y~~LKk~Ik~i~~~~~~~~~~~-~~~~~~~~~~~~sgl~~~~~~~~~~~~~~~~e~~~i~v~~~~~~g~ 79 (456)
+||||+++||||++|||+||++++........+ .+... ..+.++. .++..........++-. . ..
T Consensus 11 ~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~-~-----~~ 76 (275)
T PF03105_consen 11 AVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSI------SISSSSS--SSSRSSSNSFESTSPSS-S-----NT 76 (275)
T ss_pred cCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccchh------hhhhhhh--ccccccccccccccccc-c-----cc
Confidence 689999999999999999999999887543110 00000 0000000 00000000000000000 0 00
Q ss_pred cccchhhhhhhccCCchhhHHHHHhhhhHHhHHHHhHHHHHHHHHHhh
Q 041540 80 ESYETTFLQVAEEGGECEQEYFRKLDEEFNKVEKFSRTKVKEAIAEAE 127 (456)
Q Consensus 80 ~~~~t~ll~~~~~~~~~~~~F~~~Ld~el~Kv~~Fy~~ke~e~~~~~~ 127 (456)
....+... ......+.+..|+..||.||+|||+||..||.|+..+++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~ 123 (275)
T PF03105_consen 77 SPSSSNSE-QNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLE 123 (275)
T ss_pred cccccccc-hhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 011222378899999999999999999999999999988
No 5
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=98.99 E-value=4e-10 Score=112.13 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=30.5
Q ss_pred hhhHHHHHhhhhHHhHHHHhHHHHHHHHHHhh
Q 041540 96 CEQEYFRKLDEEFNKVEKFSRTKVKEAIAEAE 127 (456)
Q Consensus 96 ~~~~F~~~Ld~el~Kv~~Fy~~ke~e~~~~~~ 127 (456)
.++.|++.||+|||||+.|+.+||.|+++|++
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~ 76 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLK 76 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999987
No 6
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=98.28 E-value=6.6e-07 Score=89.12 Aligned_cols=28 Identities=29% Similarity=0.726 Sum_probs=26.1
Q ss_pred CCccchHhhcCchhhHHHHHHHHHHHhh
Q 041540 1 MVPEWQEAFMNYDNLKTLLKEVRRIKQR 28 (456)
Q Consensus 1 lVPEW~~aY~~Y~~LKk~Ik~i~~~~~~ 28 (456)
.||||+++|++|++|||+|++|++....
T Consensus 11 aVPEWss~Y~dYk~lKKlI~~l~~~~~~ 38 (296)
T COG5408 11 AVPEWSSKYIDYKQLKKLIYSLQKDQLS 38 (296)
T ss_pred cchhhHHhhhhHHHHHHHHHHHhcchhh
Confidence 4999999999999999999999998774
No 7
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=97.73 E-value=4.2e-05 Score=78.73 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=30.6
Q ss_pred hhhHHHHHhhhhHHhHHHHhHHHHHHHHHHhh
Q 041540 96 CEQEYFRKLDEEFNKVEKFSRTKVKEAIAEAE 127 (456)
Q Consensus 96 ~~~~F~~~Ld~el~Kv~~Fy~~ke~e~~~~~~ 127 (456)
.|+.|+..||+||+||=.|=..|-.|+++|++
T Consensus 42 dEsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~ 73 (509)
T COG5036 42 DESDFVEELDKELEKVYGFQLSKYSEVMERLR 73 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999998
No 8
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=39.53 E-value=1.5e+02 Score=29.73 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHHHH-----HHHHhhcCCCcceEeeecCCCCcchHHHHHHHHHHHHHHHHHHHhhcccccCcchhhhh
Q 041540 129 DLFAFIVLHMLMYAVN-----VYFWRRCRVNYPFIFNIEQGTELGYREVLLVSFGLATFALTSVLSNLDMEMDPKIKEYK 203 (456)
Q Consensus 129 ~~~gl~lL~~~l~g~n-----i~~W~~~~INY~fIF~~~~~~~l~~~~~~~~a~~l~~~~l~~~l~~l~~~~~~~~~~~~ 203 (456)
++|.++++.+..|++. =.+++.+|-.++-|+...++-+++...+-..+.+ +..+.
T Consensus 150 g~~rlilfl~YI~~Is~~~~IkRVFQYHGAEHk~I~~YE~~leLTpenvqk~Srl-----------HpRCG--------- 209 (318)
T COG3872 150 GFFRLILFLGYIWIISFTPDIKRVFQYHGAEHKVINCYENGLELTPENVQKQSRL-----------HPRCG--------- 209 (318)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhcCccceeEeeeccCCcCChhHhhhhccc-----------ccccC---------
Confidence 8888888877777654 4789999999999999999988887766543321 11111
Q ss_pred hhhhhHHHHHHHHHHHHHHcccccccchhHHHHHHHhhHhhhcCC
Q 041540 204 ALTELLPLGLVLLVIVILICPFNIIFRSSRFFFLASLFHCIAAPL 248 (456)
Q Consensus 204 ~~~~~~Pl~l~~~~l~~l~~P~~i~~~~~R~~~~~~l~r~l~~p~ 248 (456)
...+-+.+++.++++++.|++- ...|.+.|+++-|+
T Consensus 210 --tsFl~~~~iV~i~v~slv~~~~-------lw~Rvv~RiiLlPv 245 (318)
T COG3872 210 --TSFLLFTMIVGIFVYSLVPFDN-------LWLRVVDRIILLPV 245 (318)
T ss_pred --chhhHHHHHHHHHHHHhccccc-------HHHHHHHHHHHHHH
Confidence 1122334455566778888873 24788999998885
No 9
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=36.26 E-value=38 Score=26.45 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcccccccchhHHHHHHHhhHhhhcC
Q 041540 211 LGLVLLVIVILICPFNIIFRSSRFFFLASLFHCIAAP 247 (456)
Q Consensus 211 l~l~~~~l~~l~~P~~i~~~~~R~~~~~~l~r~l~~p 247 (456)
++-++++.++++.|.+...+++..+..+.+.+.+++|
T Consensus 6 iiQii~l~AlI~~pLGyl~~~~~~r~~~~lr~~l~~P 42 (62)
T PF11120_consen 6 IIQIIILCALIFFPLGYLARRWLPRIRRTLRRRLFPP 42 (62)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHhcCc
Confidence 3445566667778888766676677788888888777
No 10
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=25.83 E-value=1.6e+02 Score=32.59 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHhh
Q 041540 13 DNLKTLLKEVRRIKQR 28 (456)
Q Consensus 13 ~~LKk~Ik~i~~~~~~ 28 (456)
..|||-||+|||-|-+
T Consensus 45 ~DLKkEIKKLQRlRdQ 60 (575)
T KOG2150|consen 45 SDLKKEIKKLQRLRDQ 60 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4799999999998854
No 11
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=20.61 E-value=76 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhcCCcchhhhHHHHHH
Q 041540 312 RFLQCLRRLYEEKDPMQGYNGLKYFV 337 (456)
Q Consensus 312 R~~QClRry~dt~~~~hL~Na~KY~~ 337 (456)
=+++||++|..+++...|.++++-..
T Consensus 23 ~~~~~L~~Y~~~~~Vd~LV~~L~~vL 48 (78)
T cd07347 23 QVTRALERYHQERNVDDLVRDLYLVL 48 (78)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 47899999999998788877766543
Done!