Query 041540
Match_columns 456
No_of_seqs 294 out of 729
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2r_A Antimicrobial peptide e 38.2 11 0.00037 24.9 1.0 10 314-323 9-18 (37)
2 2gww_B IPAA; protein complex, 21.1 46 0.0016 20.6 1.6 14 259-272 16-29 (30)
3 3kny_A Hypothetical protein BT 9.9 42 0.0014 29.9 -1.1 19 9-27 54-72 (218)
4 1jrj_A Exendin-4; Trp-CAGE, GL 7.9 1.5E+02 0.0051 20.1 1.3 24 7-30 11-34 (39)
5 2elu_A Zinc finger protein 406 7.7 1.9E+02 0.0065 18.8 1.6 15 11-25 18-32 (37)
6 3t5v_C 26S proteasome complex 7.7 2E+02 0.0068 23.0 2.1 19 95-113 68-86 (89)
7 3bmz_A Putative uncharacterize 6.3 67 0.0023 28.6 -1.4 11 4-14 12-22 (199)
8 1d8b_A SGS1 RECQ helicase; fiv 5.9 2.6E+02 0.0088 21.9 1.9 16 12-27 64-79 (81)
9 1lfd_A Ralgds; RAL, effector i 5.9 78 0.0027 25.3 -1.1 33 378-415 48-85 (87)
10 3bu8_A Telomeric repeat-bindin 5.0 3.2E+02 0.011 25.6 2.2 16 309-324 58-73 (235)
No 1
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=38.15 E-value=11 Score=24.91 Aligned_cols=10 Identities=50% Similarity=0.866 Sum_probs=8.6
Q ss_pred HHHHHHhhhc
Q 041540 314 LQCLRRLYEE 323 (456)
Q Consensus 314 ~QClRry~dt 323 (456)
.||+|||.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 5999999875
No 2
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=21.10 E-value=46 Score=20.58 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.5
Q ss_pred hHhhhhHHHHhhhH
Q 041540 259 ADQLTSQVQAIRSL 272 (456)
Q Consensus 259 aDqLtSl~~~l~Dl 272 (456)
-|+-||+++++.++
T Consensus 16 kdvttslskvlkni 29 (30)
T 2gww_B 16 KDVTTSLSKVLKNI 29 (30)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcc
Confidence 47889999998875
No 3
>3kny_A Hypothetical protein BT_3535; structural genomics, joint center for structural genomics, J protein structure initiative; 2.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=9.89 E-value=42 Score=29.89 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=14.9
Q ss_pred hcCchhhHHHHHHHHHHHh
Q 041540 9 FMNYDNLKTLLKEVRRIKQ 27 (456)
Q Consensus 9 Y~~Y~~LKk~Ik~i~~~~~ 27 (456)
=|||+-|||.|-+=+|.++
T Consensus 54 qIDYSfLkkdISkEqKkeL 72 (218)
T 3kny_A 54 EINYSFLKKDISEKRKKEI 72 (218)
T ss_dssp EECCGGGSSCCCHHHHHHH
T ss_pred EeeHHHHhhhhhHHHHHHH
Confidence 3899999998777666665
No 4
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=7.87 E-value=1.5e+02 Score=20.08 Aligned_cols=24 Identities=4% Similarity=0.080 Sum_probs=18.7
Q ss_pred HhhcCchhhHHHHHHHHHHHhhhc
Q 041540 7 EAFMNYDNLKTLLKEVRRIKQRNK 30 (456)
Q Consensus 7 ~aY~~Y~~LKk~Ik~i~~~~~~~~ 30 (456)
++|++....|+-|..|...|.++.
T Consensus 11 S~~l~~~aak~fv~wL~~~k~r~~ 34 (39)
T 1jrj_A 11 SKQMEEEAVRLFIEWLKNGGPSSG 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCC
Confidence 468888889999999988775543
No 5
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=7.71 E-value=1.9e+02 Score=18.80 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=11.3
Q ss_pred CchhhHHHHHHHHHH
Q 041540 11 NYDNLKTLLKEVRRI 25 (456)
Q Consensus 11 ~Y~~LKk~Ik~i~~~ 25 (456)
.|+..|.+||.|...
T Consensus 18 kysdvknlikhire~ 32 (37)
T 2elu_A 18 KYSDVKNLIKHIRDA 32 (37)
T ss_dssp ECSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 378888888888643
No 6
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=7.67 E-value=2e+02 Score=22.96 Aligned_cols=19 Identities=16% Similarity=0.564 Sum_probs=16.5
Q ss_pred chhhHHHHHhhhhHHhHHH
Q 041540 95 ECEQEYFRKLDEEFNKVEK 113 (456)
Q Consensus 95 ~~~~~F~~~Ld~el~Kv~~ 113 (456)
+....|...|.+||+|+.+
T Consensus 68 dv~DDFS~QLr~EL~k~~~ 86 (89)
T 3t5v_C 68 EVDDDFTNELKAELDRYKR 86 (89)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhHh
Confidence 4678999999999999864
No 7
>3bmz_A Putative uncharacterized protein; violacein, biosynthetic protein; HET: PG4 PGE; 1.21A {Chromobacterium violaceum} PDB: 2zf3_A 2zf4_A*
Probab=6.32 E-value=67 Score=28.61 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=9.5
Q ss_pred cchHhhcCchh
Q 041540 4 EWQEAFMNYDN 14 (456)
Q Consensus 4 EW~~aY~~Y~~ 14 (456)
.|+++||+|+.
T Consensus 12 qWSSaYiSYW~ 22 (199)
T 3bmz_A 12 RWSSAYVSYWS 22 (199)
T ss_dssp EEEEEEEEEEE
T ss_pred hhhhhhhhhcc
Confidence 59999999986
No 8
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=5.94 E-value=2.6e+02 Score=21.94 Aligned_cols=16 Identities=6% Similarity=0.395 Sum_probs=14.2
Q ss_pred chhhHHHHHHHHHHHh
Q 041540 12 YDNLKTLLKEVRRIKQ 27 (456)
Q Consensus 12 Y~~LKk~Ik~i~~~~~ 27 (456)
|+..|++|.++.+.|.
T Consensus 64 fk~FK~~l~~L~k~Rk 79 (81)
T 1d8b_A 64 FKYFKATIADLSKKRS 79 (81)
T ss_dssp GGGTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8899999999998875
No 9
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=5.88 E-value=78 Score=25.26 Aligned_cols=33 Identities=36% Similarity=0.656 Sum_probs=17.9
Q ss_pred hhhccccccCCCccccccccCCCC-chhhhHHH----HHHHhh
Q 041540 378 VDWGLLQRQSRNRWLRDKLLVPRK-SVYFSAMI----LNVLLR 415 (456)
Q Consensus 378 mDWgL~~~~s~~~~LR~~l~y~~~-~~Yy~Aiv----~n~iLR 415 (456)
-||.|.|.-+.. .+|..|.. .+|| ||- .||+||
T Consensus 48 ~~y~L~Q~Lp~~----kEL~iPd~aNvfY-Am~~~~~~~FvLR 85 (87)
T 1lfd_A 48 EDYELLQIISED----HKLKIPENANVFY-AMNSAANYDFILK 85 (87)
T ss_dssp GGEEEEEESSSS----CEEECCTTSBHHH-HSCTTSCCEEEEE
T ss_pred cceEEEEEcCCC----CEEecCCCccEEE-EEcCCCCcceEEe
Confidence 467777643322 25566653 4777 553 355555
No 10
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=4.95 E-value=3.2e+02 Score=25.56 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhcC
Q 041540 309 YWFRFLQCLRRLYEEK 324 (456)
Q Consensus 309 ~~iR~~QClRry~dt~ 324 (456)
--+|.+|||.|-.+.+
T Consensus 58 k~iri~QfLsRI~eG~ 73 (235)
T 3bu8_A 58 RLLRVMQCLSRIEEGE 73 (235)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHcCC
Confidence 3579999999998654
Done!