Query 041540
Match_columns 456
No_of_seqs 294 out of 729
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 13:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041540.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041540hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 11.8 1.2E+02 0.0086 17.0 3.1 19 134-152 8-26 (27)
2 d1lc0a2 d.81.1.4 (A:129-246) B 10.3 10 0.00076 29.5 -2.5 37 11-50 3-43 (118)
3 d1iyjb5 b.40.4.3 (B:2980-3117) 10.2 80 0.0058 25.2 2.9 32 96-127 102-133 (138)
4 d3pvia_ c.52.1.6 (A:) Restrict 6.1 2.7E+02 0.019 21.8 4.3 34 310-343 8-46 (156)
5 d1vk3a1 d.79.4.1 (A:2-166) Pho 4.2 76 0.0055 26.1 -0.4 18 4-22 27-44 (165)
6 d2cjja1 a.4.1.3 (A:8-70) Radia 4.0 1.3E+02 0.0093 20.1 0.8 15 12-26 46-60 (63)
7 d2a0sa1 d.96.1.2 (A:18-180) 6- 4.0 1.5E+02 0.011 23.4 1.5 16 10-25 52-67 (163)
8 d3bqoa1 a.146.1.1 (A:62-265) T 4.0 2E+02 0.014 24.3 2.2 15 310-324 61-75 (204)
9 d1rkla_ f.23.30.1 (A:) Oligosa 3.9 1.5E+02 0.011 17.6 1.0 15 259-273 4-18 (36)
10 d1jb0j_ f.23.18.1 (J:) Subunit 3.5 1.5E+02 0.011 18.6 0.7 16 329-344 1-16 (41)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.80 E-value=1.2e+02 Score=16.96 Aligned_cols=19 Identities=16% Similarity=0.522 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 041540 134 IVLHMLMYAVNVYFWRRCR 152 (456)
Q Consensus 134 ~lL~~~l~g~ni~~W~~~~ 152 (456)
.+|.++-|++.+-+|.|.|
T Consensus 8 ~llvvftwsiamvvwgrng 26 (27)
T d2e74h1 8 ALLVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhheeeeEEEccCC
Confidence 4567788999999998876
No 2
>d1lc0a2 d.81.1.4 (A:129-246) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.28 E-value=10 Score=29.47 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=21.8
Q ss_pred CchhhHHHHHHHHHHHhhhc----cccccccchhhhhhcccccc
Q 041540 11 NYDNLKTLLKEVRRIKQRNK----QNAGVNRAMTLCRAFSGLVQ 50 (456)
Q Consensus 11 ~Y~~LKk~Ik~i~~~~~~~~----~~~~~~~~~~~~~~~sgl~~ 50 (456)
+|++|||-| +-..+... ..++|+...+-..+|||+.+
T Consensus 3 ~fk~Lkkev---~GK~L~~G~L~FT~~pL~~~~~GFPaFSGisR 43 (118)
T d1lc0a2 3 EFEFLRREV---LGKELLKGSLRFTASPLEEERFGFPAFSGISR 43 (118)
T ss_dssp HHHHHHHHH---TTCCEEEEEEEEEESCCCHHHHCCHHHHTHHH
T ss_pred HHHHHHHHh---cccchhhceEEeccCcCchhhcCCcccccchh
Confidence 588888843 32222211 14456666666777888877
No 3
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.24 E-value=80 Score=25.24 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=27.1
Q ss_pred hhhHHHHHhhhhHHhHHHHhHHHHHHHHHHhh
Q 041540 96 CEQEYFRKLDEEFNKVEKFSRTKVKEAIAEAE 127 (456)
Q Consensus 96 ~~~~F~~~Ld~el~Kv~~Fy~~ke~e~~~~~~ 127 (456)
+..+=+..|...++.|+.||.+-|+++.+-++
T Consensus 102 Hlqe~~~~Lk~~i~~id~F~~~~e~kl~~~l~ 133 (138)
T d1iyjb5 102 HFQERVTNMKHAIENIDTFYKEAEKKLIQVLK 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666888999999999999999999877554
No 4
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=6.12 E-value=2.7e+02 Score=21.80 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhcCC---c--chhhhHHHHHHHHHHHH
Q 041540 310 WFRFLQCLRRLYEEKD---P--MQGYNGLKYFVTIIAIS 343 (456)
Q Consensus 310 ~iR~~QClRry~dt~~---~--~hL~Na~KY~~si~~i~ 343 (456)
+.|+.-|+|+|.+-.+ . .---|++||+--+++..
T Consensus 8 ~~~l~p~i~eyq~la~k~~INDiFQdNGGKlLQvlmi~g 46 (156)
T d3pvia_ 8 LLELWPHIQEYQDLALKHGINDIFQGNGGKLLQVLLITG 46 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHcCchhhhhcCChhhhHHHHHhc
Confidence 4688899999987421 1 23579999987665544
No 5
>d1vk3a1 d.79.4.1 (A:2-166) Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 {Thermotoga maritima [TaxId: 2336]}
Probab=4.19 E-value=76 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.628 Sum_probs=14.6
Q ss_pred cchHhhcCchhhHHHHHHH
Q 041540 4 EWQEAFMNYDNLKTLLKEV 22 (456)
Q Consensus 4 EW~~aY~~Y~~LKk~Ik~i 22 (456)
-|||+ |.||+.|+.++.+
T Consensus 27 ~~SEH-C~~k~~~~~~~~~ 44 (165)
T d1vk3a1 27 MWSEH-CGYSHTKKYIRRL 44 (165)
T ss_dssp HTSHH-HHCTTTHHHHHTS
T ss_pred Hcchh-cCCcchhhHHhcC
Confidence 49998 9999999877643
No 6
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=4.03 E-value=1.3e+02 Score=20.09 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=10.3
Q ss_pred chhhHHHHHHHHHHH
Q 041540 12 YDNLKTLLKEVRRIK 26 (456)
Q Consensus 12 Y~~LKk~Ik~i~~~~ 26 (456)
|+.|++.||.|+..+
T Consensus 46 ~~~L~~dik~iesg~ 60 (63)
T d2cjja1 46 YEILVEDIKYIESGK 60 (63)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhccccCC
Confidence 567788777777543
No 7
>d2a0sa1 d.96.1.2 (A:18-180) 6-pyruvoyl tetrahydropterin synthase {Plasmodium vivax [TaxId: 5855]}
Probab=4.03 E-value=1.5e+02 Score=23.44 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.5
Q ss_pred cCchhhHHHHHHHHHH
Q 041540 10 MNYDNLKTLLKEVRRI 25 (456)
Q Consensus 10 ~~Y~~LKk~Ik~i~~~ 25 (456)
+||+.||+++|.+-..
T Consensus 52 ~DF~~lK~~i~~i~d~ 67 (163)
T d2a0sa1 52 IDFSILKEKVRKVCKQ 67 (163)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 7999999999987653
No 8
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.99 E-value=2e+02 Score=24.27 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhcC
Q 041540 310 WFRFLQCLRRLYEEK 324 (456)
Q Consensus 310 ~iR~~QClRry~dt~ 324 (456)
.+|++|||.|--+.+
T Consensus 61 ~i~i~QfLsRI~eG~ 75 (204)
T d3bqoa1 61 TIYICQFLTRIAAGK 75 (204)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCC
Confidence 469999999988654
No 9
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.94 E-value=1.5e+02 Score=17.64 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=11.0
Q ss_pred hHhhhhHHHHhhhHh
Q 041540 259 ADQLTSQVQAIRSLG 273 (456)
Q Consensus 259 aDqLtSl~~~l~Dl~ 273 (456)
-|||+|++..|+=..
T Consensus 4 d~qln~~~i~fgi~m 18 (36)
T d1rkla_ 4 DEQLNSLAITFGIVM 18 (36)
T ss_dssp SCGGGHHHHHHHHHH
T ss_pred hhhcCcEEeehhHHH
Confidence 379999988876543
No 10
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=3.54 E-value=1.5e+02 Score=18.58 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHH
Q 041540 329 GYNGLKYFVTIIAIST 344 (456)
Q Consensus 329 L~Na~KY~~si~~i~~ 344 (456)
+-|..||.++.++++.
T Consensus 1 M~~~~~ylstAPVla~ 16 (41)
T d1jb0j_ 1 MKHFLTYLSTAPVLAA 16 (41)
T ss_dssp CHHHHHHTTBHHHHHH
T ss_pred CchHHHHHhhhHHHHH
Done!