BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041543
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 32/158 (20%)
Query: 20 ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFS-IPSRAASSSTDDN 78
A A +WPL F N +Y H + + G +G+ +R S +P AS+ST
Sbjct: 45 APASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGSVREVTVISGLP---ASTST--- 97
Query: 79 PPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAG- 137
ERL VD R L + +V G K+Y S + ++ NQ +G
Sbjct: 98 ----------ERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSV-------NEFLNQDSGK 140
Query: 138 --CVIEWSFTVDPVEGLVLADLLQKYD----LGLQRMA 169
V+ S+TVD EG D D L LQ++
Sbjct: 141 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 178
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 32/158 (20%)
Query: 20 ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFS-IPSRAASSSTDDN 78
A A +WPL F N +Y H + + G +G+ +R S +P AS+ST
Sbjct: 48 APASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGSVREVTVISGLP---ASTST--- 100
Query: 79 PPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAG- 137
ERL VD R L + +V G K+Y S + ++ NQ +G
Sbjct: 101 ----------ERLEFVDDDHRVLSFRIVGGEHRLKNYKSVTSV-------NEFLNQDSGK 143
Query: 138 --CVIEWSFTVDPVEGLVLADLLQKYD----LGLQRMA 169
V+ S+TVD EG D D L LQ++
Sbjct: 144 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 181
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 32/158 (20%)
Query: 20 ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFS-IPSRAASSSTDDN 78
A A +WPL F N +Y H + + G +G+ +R S +P AS+ST
Sbjct: 48 APASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGSVREVTVISGLP---ASTST--- 100
Query: 79 PPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAG- 137
ERL VD R L + +V G K+Y S + ++ NQ +G
Sbjct: 101 ----------ERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSV-------NEFLNQDSGK 143
Query: 138 --CVIEWSFTVDPVEGLVLADLLQKYD----LGLQRMA 169
V+ S+TVD EG D D L LQ++
Sbjct: 144 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 181
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 30/157 (19%)
Query: 20 ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNP 79
A A +WPL F N +Y H + + G +G+ +R S AS+ST
Sbjct: 34 APASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGSVREVTVIS--GLPASTST---- 86
Query: 80 PPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAG-- 137
ERL VD R L + +V G K+Y S + ++ NQ +G
Sbjct: 87 ---------ERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSV-------NEFLNQDSGKV 130
Query: 138 -CVIEWSFTVDPVEGLVLADLLQKYD----LGLQRMA 169
V+ S+TVD EG D D L LQ++
Sbjct: 131 YTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 167
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 30/157 (19%)
Query: 20 ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNP 79
A A +WPL F N +Y H + + G +G+ +R S AS+ST
Sbjct: 34 APASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGSVREVTVIS--GLPASTST---- 86
Query: 80 PPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAG-- 137
ERL VD R L + +V G K+Y S + ++ NQ +G
Sbjct: 87 ---------ERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSV-------NEFLNQDSGKV 130
Query: 138 -CVIEWSFTVDPVEGLVLADLLQKYD----LGLQRMA 169
V+ S+TVD EG D D L LQ++
Sbjct: 131 YTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 167
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 32/158 (20%)
Query: 20 ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFS-IPSRAASSSTDDN 78
A A +WPL F N +Y H + + G +G+ +R S +P AS+ST
Sbjct: 33 APASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGSVREVTVISGLP---ASTST--- 85
Query: 79 PPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAG- 137
ERL VD R L + +V G K+Y S + ++ NQ +G
Sbjct: 86 ----------ERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSV-------NEFLNQDSGK 128
Query: 138 --CVIEWSFTVDPVEGLVLADLLQKYD----LGLQRMA 169
V+ S+TVD EG D D L LQ++
Sbjct: 129 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 166
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 32/158 (20%)
Query: 20 ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFS-IPSRAASSSTDDN 78
A A +WPL F N +Y H + + G +G+ +R S +P
Sbjct: 34 APASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGSVREVTVISGLP----------- 81
Query: 79 PPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAG- 137
S S ERL VD R L + +V G K+Y S + ++ NQ +G
Sbjct: 82 -----FSTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSV-------NEFLNQDSGK 129
Query: 138 --CVIEWSFTVDPVEGLVLADLLQKYD----LGLQRMA 169
V+ S+TVD EG D D L LQ++
Sbjct: 130 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 167
>pdb|3CNW|A Chain A, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196.
pdb|3CNW|B Chain B, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196
Length = 148
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 89 ERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDP 148
ERL + +R Y + + +Y+STI++ G ++N ++EWS T P
Sbjct: 60 ERLEVFNDKERYYTYSIXNAPFPVTNYLSTIQVKEGTESN--------TSLVEWSGTFTP 111
Query: 149 VE 150
VE
Sbjct: 112 VE 113
>pdb|3F08|A Chain A, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153.
pdb|3F08|B Chain B, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153
Length = 146
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 89 ERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDP 148
ERL + +R Y + + +Y+STI++ G ++N ++EWS T P
Sbjct: 58 ERLEVFNDKERYYTYSIXNAPFPVTNYLSTIQVKEGTESN--------TSLVEWSGTFTP 109
Query: 149 V 149
V
Sbjct: 110 V 110
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 147 DPVEGLVLADLLQKYDLGLQRMAKTMEDAIVQA 179
+P+ ++ A +L KY LG ++ AK +EDA++ A
Sbjct: 334 NPLATILSAAMLLKYGLGEEKAAKRIEDAVLVA 366
>pdb|3N6L|A Chain A, The Crystal Strucutre Of Rna-Dependent Rna Polymerase Of
Ev71 Virus
pdb|3N6M|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Gtp
pdb|3N6N|A Chain A, Crystal Structure Of Ev71 Rdrp In Complex With Br-Utp
Length = 462
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 83 ACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIP 123
+ W+K+ T DHV+ + +G ++ +VSTI+ +P
Sbjct: 401 SIRWTKDARNTQDHVRSLCLLAWHNGKQEYEKFVSTIRSVP 441
>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 1003
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 84 CSWSKERL---------VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQ 134
C W E L VT D + R + V+ NI KS V I+++P D+ D Q
Sbjct: 180 CQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQYIELLPNADDIRDSIPQ 239
>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease
Length = 977
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 84 CSWSKERL---------VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQ 134
C W E L VT D + R + V+ NI KS V I+++P D+ D Q
Sbjct: 154 CQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQYIELLPNADDIRDSIPQ 213
>pdb|2LE1|A Chain A, Solution Nmr Structure Of Tfu_2981 From Thermobifida
Fusca, Northeast Structural Genomics Consortium Target
Tfr85a
Length = 151
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 29/129 (22%)
Query: 20 ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIR-YCAGFSIPSRAASSSTDDN 78
A A +W L DF IH++ ++ + P R + AG D++
Sbjct: 12 APAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTEEELVERLVERDES 71
Query: 79 PPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGC 138
R L+Y M D ++ + ++++P DD + C
Sbjct: 72 -------------------ARRLVYTMPDPPFPITNHRAVLEVVPRDDRH---------C 103
Query: 139 VIEWSFTVD 147
+ W+ D
Sbjct: 104 TVVWTAMFD 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,822,108
Number of Sequences: 62578
Number of extensions: 239160
Number of successful extensions: 431
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 15
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)