BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041543
         (179 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P59082|LFS_ALLCE Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1
          Length = 169

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 24/161 (14%)

Query: 4   NLQQKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAG 63
           N  +KW GKV   +     +Q W L  DF N+HK   SL+    V G      C+RY  G
Sbjct: 16  NGARKWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKG 75

Query: 64  FSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIP 123
              P                  W+KE+LV +D+      Y   +   G++ Y +T++I+ 
Sbjct: 76  IMHPIEEE-------------FWAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIVE 122

Query: 124 GDDNNHDGQNQSAGCVIEWSFTVDPVEGLV---LADLLQKY 161
           G ++         G   +WSF    +EG+      ++LQ +
Sbjct: 123 GPEHK--------GSRFDWSFQCKYIEGMTESAFTEILQHW 155


>sp|O80992|PYL2_ARATH Abscisic acid receptor PYL2 OS=Arabidopsis thaliana GN=PYL2 PE=1
           SV=1
          Length = 190

 Score = 37.4 bits (85), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 32/158 (20%)

Query: 20  ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFS-IPSRAASSSTDDN 78
           A A  +WPL   F N  +Y H +     + G +G+   +R     S +P   AS+ST   
Sbjct: 45  APASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGSVREVTVISGLP---ASTST--- 97

Query: 79  PPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAG- 137
                     ERL  VD   R L + +V G    K+Y S   +       ++  NQ +G 
Sbjct: 98  ----------ERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSV-------NEFLNQDSGK 140

Query: 138 --CVIEWSFTVDPVEGLVLADLLQKYD----LGLQRMA 169
              V+  S+TVD  EG    D     D    L LQ++ 
Sbjct: 141 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLG 178


>sp|Q9SSK7|MLP34_ARATH MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1
          Length = 316

 Score = 33.9 bits (76), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 10/65 (15%)

Query: 87  SKERLVTVDHVQRCLIYEMVDGNI--GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSF 144
           +KER+  VD  +  + + +++G++   +KS+V TI++ P     H G    +G V+ W F
Sbjct: 231 AKERIEAVDPEKNLITFRVIEGDLMKEYKSFVITIQVTP----KHGG----SGSVVHWHF 282

Query: 145 TVDPV 149
             + +
Sbjct: 283 EYEKI 287


>sp|Q9SA14|LEU31_ARATH 3-isopropylmalate dehydrogenase 1, chloroplastic OS=Arabidopsis
           thaliana GN=IMDH1 PE=1 SV=2
          Length = 404

 Score = 31.6 bits (70), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 147 DPVEGLVLADLLQKYDLGLQRMAKTMEDAIVQA 179
           +P+  ++ A +L KY LG ++ AK +EDA+V A
Sbjct: 335 NPLATILSAAMLLKYGLGEEKAAKMIEDAVVDA 367


>sp|Q9FMT1|LEU33_ARATH 3-isopropylmalate dehydrogenase 3, chloroplastic OS=Arabidopsis
           thaliana GN=IMDH3 PE=1 SV=1
          Length = 409

 Score = 31.6 bits (70), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 147 DPVEGLVLADLLQKYDLGLQRMAKTMEDAIVQA 179
           +P+  ++ A +L KY LG ++ AK +EDA+V A
Sbjct: 338 NPLATILSAAMLLKYGLGEEKAAKRIEDAVVDA 370


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,172,088
Number of Sequences: 539616
Number of extensions: 2840979
Number of successful extensions: 5580
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5575
Number of HSP's gapped (non-prelim): 5
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)