Query 041543
Match_columns 179
No_of_seqs 119 out of 689
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 1E-24 2.2E-29 170.2 18.8 136 12-177 4-146 (148)
2 PF00407 Bet_v_1: Pathogenesis 99.8 1.4E-18 3.1E-23 136.8 17.0 139 13-178 8-150 (151)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1.5E-16 3.2E-21 118.4 17.4 132 12-172 4-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 9.9E-16 2.2E-20 114.0 20.0 131 9-173 2-139 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 5.9E-15 1.3E-19 111.9 16.6 142 12-177 2-143 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.6 2.9E-13 6.3E-18 100.3 16.4 135 12-177 2-139 (140)
7 cd07819 SRPBCC_2 Ligand-bindin 99.6 4.6E-13 1E-17 100.1 17.3 132 12-174 5-138 (140)
8 cd08862 SRPBCC_Smu440-like Lig 99.5 2.2E-12 4.7E-17 96.4 17.2 132 12-176 4-136 (138)
9 cd07822 SRPBCC_4 Ligand-bindin 99.5 2.4E-12 5.3E-17 95.7 16.2 137 12-176 3-140 (141)
10 cd07818 SRPBCC_1 Ligand-bindin 99.5 3.3E-12 7.1E-17 97.6 15.9 135 9-173 2-149 (150)
11 cd08861 OtcD1_ARO-CYC_like N-t 99.5 2.3E-12 5.1E-17 97.3 14.0 133 13-173 3-141 (142)
12 cd07812 SRPBCC START/RHO_alpha 99.4 3.6E-11 7.7E-16 86.4 16.5 136 12-175 2-140 (141)
13 cd07813 COQ10p_like Coenzyme Q 99.4 8.2E-12 1.8E-16 94.5 13.2 133 13-176 3-135 (138)
14 cd07817 SRPBCC_8 Ligand-bindin 99.4 5.5E-11 1.2E-15 88.8 15.1 127 12-173 3-138 (139)
15 cd07825 SRPBCC_7 Ligand-bindin 99.3 6E-11 1.3E-15 89.8 13.8 112 12-149 3-115 (144)
16 cd07814 SRPBCC_CalC_Aha1-like 99.3 2.8E-11 6.1E-16 90.3 11.8 108 12-149 3-111 (139)
17 cd07824 SRPBCC_6 Ligand-bindin 99.2 8.6E-10 1.9E-14 84.7 15.9 107 13-149 5-112 (146)
18 cd05018 CoxG Carbon monoxide d 99.2 9.9E-10 2.1E-14 82.3 13.8 109 12-149 4-113 (144)
19 cd08860 TcmN_ARO-CYC_like N-te 99.1 3.2E-09 7E-14 82.8 15.5 134 13-174 5-144 (146)
20 cd07820 SRPBCC_3 Ligand-bindin 99.1 6.3E-09 1.4E-13 79.0 15.4 108 13-149 3-112 (137)
21 PF03364 Polyketide_cyc: Polyk 99.0 3.1E-08 6.7E-13 73.8 13.9 129 18-172 1-129 (130)
22 cd07823 SRPBCC_5 Ligand-bindin 98.9 4E-08 8.6E-13 75.4 13.1 107 14-148 4-113 (146)
23 cd08898 SRPBCC_CalC_Aha1-like_ 98.9 6.8E-08 1.5E-12 72.8 13.9 134 12-178 4-145 (145)
24 PRK10724 hypothetical protein; 98.9 7.8E-08 1.7E-12 76.3 13.4 133 12-175 18-150 (158)
25 cd08893 SRPBCC_CalC_Aha1-like_ 98.8 3.5E-07 7.6E-12 68.0 13.2 128 12-176 3-134 (136)
26 cd08899 SRPBCC_CalC_Aha1-like_ 98.7 2.4E-07 5.2E-12 72.4 11.8 125 11-175 13-138 (157)
27 cd08894 SRPBCC_CalC_Aha1-like_ 98.6 1.8E-06 4E-11 65.7 13.3 135 12-177 3-138 (139)
28 cd07826 SRPBCC_CalC_Aha1-like_ 98.6 3.8E-06 8.3E-11 64.4 14.6 139 12-178 3-142 (142)
29 cd08876 START_1 Uncharacterize 98.6 1.2E-05 2.7E-10 64.3 17.5 142 10-176 42-194 (195)
30 COG3427 Carbon monoxide dehydr 98.5 3.3E-06 7.3E-11 66.5 12.5 107 14-149 6-113 (146)
31 cd08895 SRPBCC_CalC_Aha1-like_ 98.4 2.8E-05 6E-10 59.6 15.9 140 12-177 3-145 (146)
32 cd08897 SRPBCC_CalC_Aha1-like_ 98.4 2.1E-05 4.5E-10 59.4 14.3 129 12-178 3-133 (133)
33 PF06240 COXG: Carbon monoxide 98.3 2.5E-05 5.3E-10 60.1 11.9 106 14-148 2-108 (140)
34 cd08896 SRPBCC_CalC_Aha1-like_ 98.2 7.9E-05 1.7E-09 57.1 14.3 135 12-178 3-146 (146)
35 cd08900 SRPBCC_CalC_Aha1-like_ 98.2 0.00019 4E-09 54.7 15.2 132 12-176 3-141 (143)
36 cd08892 SRPBCC_Aha1 Putative h 98.2 0.00012 2.7E-09 55.0 13.9 99 12-149 3-102 (126)
37 cd08891 SRPBCC_CalC Ligand-bin 98.1 0.00016 3.4E-09 55.6 14.3 132 12-177 3-148 (149)
38 cd08901 SRPBCC_CalC_Aha1-like_ 98.1 0.0001 2.2E-09 56.0 12.7 97 12-145 3-99 (136)
39 PF08327 AHSA1: Activator of H 98.1 9E-05 1.9E-09 54.2 12.0 121 19-176 1-123 (124)
40 COG5637 Predicted integral mem 98.1 6.7E-05 1.4E-09 61.3 11.4 130 10-173 71-209 (217)
41 PTZ00220 Activator of HSP-90 A 97.9 0.00025 5.5E-09 54.1 10.7 90 19-145 2-93 (132)
42 cd08874 START_STARD9-like C-te 97.8 0.0023 4.9E-08 52.9 16.4 123 13-158 49-185 (205)
43 COG3832 Uncharacterized conser 97.8 0.00075 1.6E-08 52.7 11.9 134 12-177 11-148 (149)
44 cd08905 START_STARD1-like Chol 97.6 0.0044 9.6E-08 50.9 15.4 124 12-155 52-184 (209)
45 cd08870 START_STARD2_7-like Li 97.6 0.01 2.3E-07 48.5 17.3 146 8-176 49-206 (209)
46 cd08871 START_STARD10-like Lip 97.6 0.01 2.2E-07 48.9 16.9 140 12-174 50-202 (222)
47 COG2867 Oligoketide cyclase/li 97.5 0.00093 2E-08 52.7 9.5 133 13-175 6-138 (146)
48 cd08873 START_STARD14_15-like 97.5 0.0033 7.1E-08 53.2 13.3 114 12-148 80-204 (235)
49 cd00177 START Lipid-binding ST 97.5 0.025 5.5E-07 43.9 17.0 141 9-174 39-190 (193)
50 cd08868 START_STARD1_3_like Ch 97.4 0.014 3.1E-07 47.5 15.8 121 12-154 51-182 (208)
51 cd08906 START_STARD3-like Chol 97.4 0.025 5.4E-07 46.7 17.2 38 12-50 52-90 (209)
52 cd08914 START_STARD15-like Lip 97.3 0.027 5.8E-07 47.8 16.0 137 11-174 80-235 (236)
53 cd08869 START_RhoGAP C-termina 97.2 0.043 9.4E-07 44.6 15.8 113 12-149 47-168 (197)
54 cd08911 START_STARD7-like Lipi 97.2 0.051 1.1E-06 44.5 16.2 145 12-176 48-204 (207)
55 cd08867 START_STARD4_5_6-like 97.1 0.084 1.8E-06 42.9 16.7 143 12-176 49-205 (206)
56 cd08913 START_STARD14-like Lip 97.0 0.069 1.5E-06 45.3 15.9 113 12-148 84-209 (240)
57 cd08903 START_STARD5-like Lipi 96.9 0.13 2.8E-06 42.2 16.3 48 12-60 49-98 (208)
58 cd08877 START_2 Uncharacterize 96.8 0.067 1.4E-06 43.8 14.1 142 11-177 48-213 (215)
59 COG4276 Uncharacterized conser 96.8 0.12 2.7E-06 40.5 14.2 108 14-151 7-120 (153)
60 smart00234 START in StAR and p 96.6 0.25 5.5E-06 39.4 15.8 117 9-149 45-173 (206)
61 cd08908 START_STARD12-like C-t 96.6 0.26 5.6E-06 40.8 16.1 118 12-155 55-180 (204)
62 cd08910 START_STARD2-like Lipi 96.5 0.13 2.8E-06 42.3 13.7 142 10-176 50-204 (207)
63 PF10698 DUF2505: Protein of u 96.5 0.28 6.2E-06 38.5 14.8 70 95-175 85-158 (159)
64 cd08904 START_STARD6-like Lipi 96.3 0.49 1.1E-05 39.1 16.6 145 12-176 49-203 (204)
65 cd08902 START_STARD4-like Lipi 94.5 2.4 5.1E-05 35.3 15.2 143 12-176 50-201 (202)
66 PF08982 DUF1857: Domain of un 94.4 1.3 2.9E-05 34.9 11.8 62 19-103 17-79 (149)
67 cd08863 SRPBCC_DUF1857 DUF1857 92.4 4.3 9.4E-05 31.8 14.1 66 19-107 16-82 (141)
68 PF01852 START: START domain; 91.8 5.4 0.00012 31.5 15.3 145 7-175 44-199 (206)
69 cd08872 START_STARD11-like Cer 91.7 7.2 0.00016 32.7 15.1 39 11-49 54-92 (235)
70 KOG3177 Oligoketide cyclase/li 79.1 36 0.00077 28.7 10.3 105 16-148 75-182 (227)
71 cd08909 START_STARD13-like C-t 73.3 52 0.0011 27.2 16.4 119 7-155 52-181 (205)
72 PLN00188 enhanced disease resi 69.1 1.2E+02 0.0027 29.9 13.6 124 12-153 230-364 (719)
73 cd08907 START_STARD8-like C-te 26.9 3.7E+02 0.0081 22.4 14.1 112 12-155 55-181 (205)
74 KOG2936 Uncharacterized conser 25.3 3.4E+02 0.0073 24.1 7.1 97 14-149 178-275 (301)
75 PF08379 Bact_transglu_N: Bact 21.0 2.5E+02 0.0055 19.0 4.6 41 99-150 6-46 (82)
76 KOG2761 START domain-containin 21.0 5.1E+02 0.011 21.9 14.2 145 9-176 53-216 (219)
77 TIGR02777 LigD_PE_dom DNA liga 20.9 48 0.001 26.6 1.0 56 84-149 53-109 (156)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.93 E-value=1e-24 Score=170.21 Aligned_cols=136 Identities=21% Similarity=0.423 Sum_probs=110.5
Q ss_pred EEEEEecCCChhhHhHHhhCCCC-c-cccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFN-I-HKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE 89 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~-l-~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E 89 (179)
..+++| +||+|+||++++||.+ + +.|+|.|.+|+.++|+ |++||+|.+++. +|. ...+++|
T Consensus 4 ~~e~~i-~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~~-----~~~----------~~~~~kE 66 (148)
T cd07816 4 EHEVEL-KVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFG-----PGG----------KVKYVKE 66 (148)
T ss_pred EEEEEe-cCCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEEc-----CCC----------cceEEEE
Confidence 467788 9999999999999995 4 7799999999998886 889999999983 221 1348999
Q ss_pred EEEEEecCCcEEEEEEEeccc---ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCC--CcHHHHHHHHHHH
Q 041543 90 RLVTVDHVQRCLIYEMVDGNI---GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEG--LVLADLLQKYDLG 164 (179)
Q Consensus 90 ~L~~~D~~~r~~~Y~~~~~~~---~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g--~~~~~~~~~~~~g 164 (179)
||+.+|+.+|+|+|+++++++ ++++|.++|+|.|.++ ++|.++|+++|++.++ ..++.+..++.
T Consensus 67 ~l~~~D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~---------~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~-- 135 (148)
T cd07816 67 RIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGD---------GGCVVKWTIEYEKKGDAEPPEEEIKAGKE-- 135 (148)
T ss_pred EEEEEcccccEEEEEEEecccccCceEEEEEEEEEEECCC---------CCEEEEEEEEEEECCCCCCCHHHHHhHHH--
Confidence 999999999999999999887 5999999999999966 6899999999998866 34444444444
Q ss_pred HHHHHHHHHHHhh
Q 041543 165 LQRMAKTMEDAIV 177 (179)
Q Consensus 165 l~~m~~~le~~l~ 177 (179)
.+.+.++.++.
T Consensus 136 --~~~~~~~~~~~ 146 (148)
T cd07816 136 --KALKMFKAVEA 146 (148)
T ss_pred --HHHHHHHHHHh
Confidence 44555555543
No 2
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.81 E-value=1.4e-18 Score=136.84 Aligned_cols=139 Identities=25% Similarity=0.461 Sum_probs=107.4
Q ss_pred EEEEecCCChhhHhHHhhCCCC-ccccccce-eEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 13 VSTRVSRATADQIWPLFTDFFN-IHKYFHSL-ATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 13 vs~~i~~apae~VW~~l~df~~-l~~w~p~i-~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
.++++ ++||+++|+++....+ +++.+|.+ .+++.++|+.|..|+||.+++. + +| ....+|||
T Consensus 8 ~E~~~-~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~--~--~~-----------~~~~~Kek 71 (151)
T PF00407_consen 8 VEVEV-KVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFG--P--GG-----------PFKYVKEK 71 (151)
T ss_dssp EEEEE-SS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEE--T--TS-----------SEEEEEEE
T ss_pred EEEEe-cCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEec--C--CC-----------CcceeEEE
Confidence 34555 9999999999987444 78989854 6778888964444599999984 2 33 24589999
Q ss_pred EEEEecCCcEEEEEEEeccc--ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHH
Q 041543 91 LVTVDHVQRCLIYEMVDGNI--GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRM 168 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~~~--~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m 168 (179)
++.+|+++++++|++++|++ .+..|..+++++|.++ ++|.++|+.+|++..+..+.. ..+..++..|
T Consensus 72 ve~~D~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~---------g~~v~k~t~~Ye~~~~~~~~p--~~~~~~~~~~ 140 (151)
T PF00407_consen 72 VEAIDEENKTITYTVIEGDVLGDYKSFKSTIQKIPKGD---------GGCVVKWTIEYEKKGEDVPPP--EKYLDFAVGM 140 (151)
T ss_dssp EEEEETTTTEEEEEEEEETTGTTTEEEEEEEEEEEETT---------SCEEEEEEEEEEESSTSCHHH--HHHHHHHHHH
T ss_pred EEeecCCCcEEEEEEEeccccccEEEEEEEEEecCCCC---------CceEEEEEEEEEecCCCCCCc--HHHHHHHHHH
Confidence 99999999999999999884 6789999999998887 679999999999986544221 2233337799
Q ss_pred HHHHHHHhhc
Q 041543 169 AKTMEDAIVQ 178 (179)
Q Consensus 169 ~~~le~~l~~ 178 (179)
.+.+|+||++
T Consensus 141 ~K~ieayLla 150 (151)
T PF00407_consen 141 FKAIEAYLLA 150 (151)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.75 E-value=1.5e-16 Score=118.37 Aligned_cols=132 Identities=31% Similarity=0.535 Sum_probs=104.6
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+.+++| ++|+++||+++.|+.++++|+|.+.+++...+.+ ++|++|.+... +|. .+++++
T Consensus 4 ~~~~~i-~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~-~~g~~~~~~~~-----~g~-------------~~~~~i 63 (140)
T cd07821 4 TVSVTI-DAPADKVWALLSDFGGLHKWHPAVASCELEGGGP-GVGAVRTVTLK-----DGG-------------TVRERL 63 (140)
T ss_pred EEEEEE-CCCHHHHHHHHhCcCchhhhccCcceEEeecCCC-CCCeEEEEEeC-----CCC-------------EEEEEe
Confidence 567889 9999999999999999999999998888766543 57888887762 333 789999
Q ss_pred EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcH----HHHHHHHHHHHHH
Q 041543 92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVL----ADLLQKYDLGLQR 167 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~----~~~~~~~~~gl~~ 167 (179)
+++|+.++.+.|++.++..++.++.+++++.|.++ ++|+|+|++.+++..+... ..+...++.+|++
T Consensus 64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (140)
T cd07821 64 LALDDAERRYSYRIVEGPLPVKNYVATIRVTPEGD---------GGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAA 134 (140)
T ss_pred hhcCccCCEEEEEecCCCCCcccceEEEEEEECCC---------CccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999868899999987778889999999999986 6899999999998643222 2333555555555
Q ss_pred HHHHH
Q 041543 168 MAKTM 172 (179)
Q Consensus 168 m~~~l 172 (179)
|++.+
T Consensus 135 L~~~~ 139 (140)
T cd07821 135 LKAAL 139 (140)
T ss_pred HHHhh
Confidence 55544
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.74 E-value=9.9e-16 Score=114.01 Aligned_cols=131 Identities=21% Similarity=0.383 Sum_probs=100.8
Q ss_pred eeEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCC-CCCCCCCCCCCCCcee
Q 041543 9 WEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAA-SSSTDDNPPPAACSWS 87 (179)
Q Consensus 9 w~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g-~~~~~~~~~~~~~~~~ 87 (179)
|+-.++++| +||+++||++++|+.++++|.|.+..|+...+ ++++..+.+.. .| . .+
T Consensus 2 ~~~~~~~~v-~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~------~g~~-------------~~ 59 (139)
T PF10604_consen 2 FKVEVSIEV-PAPPEAVWDLLSDPENWPRWWPGVKSVELLSG--GGPGTERTVRV------AGRG-------------TV 59 (139)
T ss_dssp EEEEEEEEE-SS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE--CSTEEEEEEEE------CSCS-------------EE
T ss_pred EEEEEEEEE-CCCHHHHHHHHhChhhhhhhhhceEEEEEccc--cccceeEEEEe------cccc-------------ce
Confidence 456789999 99999999999999999999999999988652 23455455554 23 2 79
Q ss_pred EEEEEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcC-CCCCcH-H----HHHHHH
Q 041543 88 KERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDP-VEGLVL-A----DLLQKY 161 (179)
Q Consensus 88 ~E~L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p-~~g~~~-~----~~~~~~ 161 (179)
+++++.+++..+.+.|++. ..++.++..++++.|.++ +|+|+|++++++ ..+... . .+...+
T Consensus 60 ~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (139)
T PF10604_consen 60 REEITEYDPEPRRITWRFV--PSGFTNGTGRWRFEPVGD----------GTRVTWTVEFEPGLPGWLAGPLLRPAVKRIV 127 (139)
T ss_dssp EEEEEEEETTTTEEEEEEE--SSSSCEEEEEEEEEEETT----------TEEEEEEEEEEESCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEecCCCcEEEEEEE--ecceeEEEEEEEEEEcCC----------CEEEEEEEEEEEeccchhhHHHHHHHHHHHH
Confidence 9999999987899999996 677778999999999985 599999998885 434332 2 234556
Q ss_pred HHHHHHHHHHHH
Q 041543 162 DLGLQRMAKTME 173 (179)
Q Consensus 162 ~~gl~~m~~~le 173 (179)
+..|++|++.+|
T Consensus 128 ~~~l~~l~~~~E 139 (139)
T PF10604_consen 128 REALENLKRAAE 139 (139)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhcccC
Confidence 666666666654
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.67 E-value=5.9e-15 Score=111.89 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=97.2
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+.++.| +||+++||+++.||.++++|+|.+.+|+.+.+.++.. .+|.....++. .... ...+..++
T Consensus 2 ~~~~~i-~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~-~~~~~~~~~~~-~~~~-----------~~~v~~~~ 67 (144)
T cd08866 2 VARVRV-PAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRV-VLEQTGKQGIL-FFKF-----------EARVVLEL 67 (144)
T ss_pred eEEEEE-CCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEE-EEEEeeeEEEE-eeee-----------eEEEEEEE
Confidence 468899 9999999999999999999999999998876532211 12211100000 0000 01445567
Q ss_pred EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHH
Q 041543 92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKT 171 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~~~ 171 (179)
.+.++..+++.|++++++ +..|.+++++.|.+++ ++|+|+|.+.++|..+.....+..+++..+..+.+.
T Consensus 68 ~~~~~~~~~i~~~~~~g~--~~~~~g~w~~~~~~~~--------~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~ 137 (144)
T cd08866 68 REREEFPRELDFEMVEGD--FKRFEGSWRLEPLADG--------GGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLA 137 (144)
T ss_pred EEecCCCceEEEEEcCCc--hhceEEEEEEEECCCC--------CeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 777766789999998764 6689999999999862 489999999999865444433445566666666666
Q ss_pred HHHHhh
Q 041543 172 MEDAIV 177 (179)
Q Consensus 172 le~~l~ 177 (179)
|.+.++
T Consensus 138 lr~~ae 143 (144)
T cd08866 138 IRAEAE 143 (144)
T ss_pred HHHHHh
Confidence 665554
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.57 E-value=2.9e-13 Score=100.33 Aligned_cols=135 Identities=9% Similarity=0.120 Sum_probs=93.1
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+.++.| +||+++||++|+||.++++|+|.+.+|+.+.+.+..+|+...+... + .|. .-.+++++
T Consensus 2 ~~~~~i-~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~-~---~g~-----------~~~~~~~v 65 (140)
T cd08865 2 EESIVI-ERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRK-F---LGR-----------RIELTYEI 65 (140)
T ss_pred ceEEEE-cCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEE-e---cCc-----------eEEEEEEE
Confidence 357889 9999999999999999999999998888765544557766555432 0 121 11568899
Q ss_pred EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCc---HHHHHHHHHHHHHHH
Q 041543 92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLV---LADLLQKYDLGLQRM 168 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~---~~~~~~~~~~gl~~m 168 (179)
+.+++ .+.+.|....+++ .+..++++.+.+ ++|.++|++++++. +.. ..-+...+...++.+
T Consensus 66 ~~~~p-~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~t~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 130 (140)
T cd08865 66 TEYEP-GRRVVFRGSSGPF---PYEDTYTFEPVG----------GGTRVRYTAELEPG-GFARLLDPLMAPAFRRRARAA 130 (140)
T ss_pred EEecC-CcEEEEEecCCCc---ceEEEEEEEEcC----------CceEEEEEEEEccc-hhHHHHHHHHHHHHhhhhHHH
Confidence 99997 4789999776533 478999999986 47999999988862 111 112223444444445
Q ss_pred HHHHHHHhh
Q 041543 169 AKTMEDAIV 177 (179)
Q Consensus 169 ~~~le~~l~ 177 (179)
.++|.+.++
T Consensus 131 l~~lk~~~e 139 (140)
T cd08865 131 LENLKALLE 139 (140)
T ss_pred HHHHHHHhh
Confidence 555544443
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.57 E-value=4.6e-13 Score=100.07 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=87.0
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCc-EEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPD-CIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G-~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
+.+++| +||+++||++|.|+.++++|+|.+.+|+...+.+++.. .+| +... . .+ ...+.
T Consensus 5 ~~s~~i-~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~--------------~~~~~ 64 (140)
T cd07819 5 SREFEI-EAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVR-IGVG-A---YG--------------IKDTY 64 (140)
T ss_pred EEEEEE-eCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEE-EEEe-e---ee--------------EEEEE
Confidence 467888 99999999999999999999999999988655433322 233 2221 0 11 22233
Q ss_pred EEEEecC-CcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHH
Q 041543 91 LVTVDHV-QRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMA 169 (179)
Q Consensus 91 L~~~D~~-~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~ 169 (179)
+.+++.. .+.++|++.++. ++..+.+++++.|.++ +|+|+|++++++........+....+..+..+.
T Consensus 65 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~----------~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (140)
T cd07819 65 ALEYTWDGAGSVSWTLVEGE-GNRSQEGSYTLTPKGD----------GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEAL 133 (140)
T ss_pred EEEEEEcCCCcEEEEEeccc-ceeEEEEEEEEEECCC----------CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHH
Confidence 3344322 477999988754 6778899999999974 799999999987432222222344444444555
Q ss_pred HHHHH
Q 041543 170 KTMED 174 (179)
Q Consensus 170 ~~le~ 174 (179)
+.|.+
T Consensus 134 ~~l~~ 138 (140)
T cd07819 134 KGLKK 138 (140)
T ss_pred HhHhh
Confidence 44444
No 8
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.52 E-value=2.2e-12 Score=96.38 Aligned_cols=132 Identities=14% Similarity=0.036 Sum_probs=90.7
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
..+++| +||+++||++++||.++++|+|.+.+|+...+.+ .+|..-.+.. + .+. .+..+|
T Consensus 4 ~~~~~i-~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~-~~G~~~~~~~---~--~~~-------------~~~~~i 63 (138)
T cd08862 4 EATIVI-DAPPERVWAVLTDVENWPAWTPSVETVRLEGPPP-AVGSSFKMKP---P--GLV-------------RSTFTV 63 (138)
T ss_pred EEEEEE-cCCHHHHHHHHHhhhhcccccCcceEEEEecCCC-CCCcEEEEec---C--CCC-------------ceEEEE
Confidence 568889 9999999999999999999999999988855432 5565444444 1 222 567889
Q ss_pred EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCC-CcHHHHHHHHHHHHHHHHH
Q 041543 92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEG-LVLADLLQKYDLGLQRMAK 170 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g-~~~~~~~~~~~~gl~~m~~ 170 (179)
+++++. ++|+|+.... ...+..++++.+.++ ++|+++|++++.+..+ .....+...++.+++...+
T Consensus 64 ~~~~p~-~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (138)
T cd08862 64 TELRPG-HSFTWTGPAP---GISAVHRHEFEAKPD---------GGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLE 130 (138)
T ss_pred EEecCC-CEEEEEecCC---CEEEEEEEEEEEcCC---------CcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHH
Confidence 999975 5688886542 345678999999875 6899999999886421 1112233444444444444
Q ss_pred HHHHHh
Q 041543 171 TMEDAI 176 (179)
Q Consensus 171 ~le~~l 176 (179)
.|.+.+
T Consensus 131 ~lk~~~ 136 (138)
T cd08862 131 GLKAAA 136 (138)
T ss_pred HHHHHh
Confidence 444433
No 9
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.50 E-value=2.4e-12 Score=95.65 Aligned_cols=137 Identities=16% Similarity=0.161 Sum_probs=96.1
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+.+++| +||+++||+++.|+.++++|+|.+..+.... ..+|....+.... + ++. .....+++
T Consensus 3 ~~~~~i-~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~---~~~G~~~~~~~~~-~--~~~-----------~~~~~~~v 64 (141)
T cd07822 3 STEIEI-NAPPEKVWEVLTDFPSYPEWNPFVRSATGLS---LALGARLRFVVKL-P--GGP-----------PRSFKPRV 64 (141)
T ss_pred EEEEEe-cCCHHHHHHHHhccccccccChhheeEeccc---cCCCCEEEEEEeC-C--CCC-----------cEEEEEEE
Confidence 568899 9999999999999999999999886665421 2345433333310 1 111 12678899
Q ss_pred EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCC-cHHHHHHHHHHHHHHHHH
Q 041543 92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGL-VLADLLQKYDLGLQRMAK 170 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~-~~~~~~~~~~~gl~~m~~ 170 (179)
+++|+. ++|.|+...++.++..+..+++|.+.++ ++|+++|++.+.+.... ....+...++.+++.+.+
T Consensus 65 ~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T cd07822 65 TEVEPP-RRLAWRGGLPFPGLLDGEHSFELEPLGD---------GGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNE 134 (141)
T ss_pred EEEcCC-CEeEEEecCCCCcEeeEEEEEEEEEcCC---------CcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHH
Confidence 999985 6899998776555456778999999865 68999999887654221 122344667777777777
Q ss_pred HHHHHh
Q 041543 171 TMEDAI 176 (179)
Q Consensus 171 ~le~~l 176 (179)
.|++++
T Consensus 135 ~L~~~~ 140 (141)
T cd07822 135 ALKARA 140 (141)
T ss_pred HHHHhh
Confidence 777665
No 10
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.48 E-value=3.3e-12 Score=97.56 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=91.3
Q ss_pred eeEEEEEEecCCChhhHhHHhhCCCCccccccceeE---EEe-ecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCC
Q 041543 9 WEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLAT---SYG-VHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAAC 84 (179)
Q Consensus 9 w~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~---~~~-~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~ 84 (179)
|.-+.++.| ++|+++||+++.|+.++++|+|.+.. +.. ..+...++|+...+... .+.
T Consensus 2 ~~~~~s~~I-~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~-----~~~------------ 63 (150)
T cd07818 2 YRVERSIVI-NAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGN-----DKV------------ 63 (150)
T ss_pred eEEEEEEEE-eCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecC-----Ccc------------
Confidence 556789999 99999999999999999999996643 222 12333456766555541 101
Q ss_pred ceeEEEEEEEecCCcEEEEEEEecccce-eeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCc--------HH
Q 041543 85 SWSKERLVTVDHVQRCLIYEMVDGNIGF-KSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLV--------LA 155 (179)
Q Consensus 85 ~~~~E~L~~~D~~~r~~~Y~~~~~~~~~-~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~--------~~ 155 (179)
.....+++++++ .+++.|++.... ++ ..+..++++.|.+ ++|.|+|+++++...+.. ..
T Consensus 64 ~~~~~~v~~~~p-~~~i~~~~~~~~-~~~~~~~~~~~~~~~~----------~gT~v~~~~~~~~~~~~~~~~~~~~~~~ 131 (150)
T cd07818 64 GEGEMEITESVP-NERIEYELRFIK-PFEATNDVEFTLEPVG----------GGTKVTWGMSGELPFPLKLMYLFLDMDK 131 (150)
T ss_pred cceEEEEEecCC-CcEEEEEEEecC-CccccceEEEEEEEcC----------CceEEEEEEEecCCchHHHHHHHhhHHH
Confidence 033557888887 577999998522 23 3778999999995 589999999998653222 12
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041543 156 DLLQKYDLGLQRMAKTME 173 (179)
Q Consensus 156 ~~~~~~~~gl~~m~~~le 173 (179)
.+...++.+|++|++.+|
T Consensus 132 ~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 132 MIGKDFEKGLANLKAVLE 149 (150)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333445555666665555
No 11
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.47 E-value=2.3e-12 Score=97.34 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=89.7
Q ss_pred EEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEE
Q 041543 13 VSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLV 92 (179)
Q Consensus 13 vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~ 92 (179)
.+++| +||+++||++++||.++++|+|. ..+..+.+. +....+|..... + +|. . ...+...
T Consensus 3 ~s~~i-~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~-~~~~~~~~~~~~--~--~g~----------~--~~~~~~~ 63 (142)
T cd08861 3 HSVTV-AAPAEDVYDLLADAERWPEFLPT-VHVERLELD-GGVERLRMWATA--F--DGS----------V--HTWTSRR 63 (142)
T ss_pred EEEEE-cCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEc-CCEEEEEEEEEc--C--CCc----------E--EEEEEEE
Confidence 57899 99999999999999999999997 444433432 111234432221 1 222 1 2234556
Q ss_pred EEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCc-H-HH----HHHHHHHHHH
Q 041543 93 TVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLV-L-AD----LLQKYDLGLQ 166 (179)
Q Consensus 93 ~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~-~-~~----~~~~~~~gl~ 166 (179)
.+|+..+++.|.+..+...+..+.+++++.|.++ ++|.|+|+.++++..... . .. +...++..|.
T Consensus 64 ~~~~~~~~i~~~~~~~~~~~~~~~g~w~~~~~~~---------~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (142)
T cd08861 64 VLDPEGRRIVFRQEEPPPPVASMSGEWRFEPLGG---------GGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELA 134 (142)
T ss_pred EEcCCCCEEEEEEeeCCCChhhheeEEEEEECCC---------CcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHH
Confidence 7788788899998876667788999999999986 589999998888753221 1 11 2234666666
Q ss_pred HHHHHHH
Q 041543 167 RMAKTME 173 (179)
Q Consensus 167 ~m~~~le 173 (179)
+|++.+|
T Consensus 135 ~lk~~~E 141 (142)
T cd08861 135 ALRAAAE 141 (142)
T ss_pred HHHHHhh
Confidence 6666655
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=3.6e-11 Score=86.38 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=98.7
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+.++.| ++|+++||+++.|+.++++|+|.+..|+...+.....|....+... + .+ ......++
T Consensus 2 ~~~~~i-~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~------------~~~~~~~v 64 (141)
T cd07812 2 EASIEI-PAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRK--G--GR------------RLTLTSEV 64 (141)
T ss_pred cEEEEe-CCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEec--C--Cc------------cccceEEE
Confidence 467889 9999999999999999999999999998866544455555544431 0 11 12577888
Q ss_pred EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCC---cHHHHHHHHHHHHHHH
Q 041543 92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGL---VLADLLQKYDLGLQRM 168 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~---~~~~~~~~~~~gl~~m 168 (179)
+.+++ ...++|....++.+ ..+..++++.+.++ ++|+++|++++++.... ....+...++..+..+
T Consensus 65 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T cd07812 65 TEVDP-PRPGRFRVTGGGGG-VDGTGEWRLEPEGD---------GGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAAL 133 (141)
T ss_pred EEecC-CCceEEEEecCCCC-cceeEEEEEEECCC---------CcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHH
Confidence 88887 56799998876654 67899999999975 48999999999876433 2334445566555555
Q ss_pred HHHHHHH
Q 041543 169 AKTMEDA 175 (179)
Q Consensus 169 ~~~le~~ 175 (179)
.+.++..
T Consensus 134 ~~~~~~~ 140 (141)
T cd07812 134 LRALKAR 140 (141)
T ss_pred HHHHHhh
Confidence 5555543
No 13
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.40 E-value=8.2e-12 Score=94.55 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=91.9
Q ss_pred EEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEE
Q 041543 13 VSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLV 92 (179)
Q Consensus 13 vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~ 92 (179)
-+++| +||++.||+++.|+.++++|+|.+.+|+.+++.+ ..-.++ .... .| +. .. ....++.
T Consensus 3 ~s~~i-~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~-~~~~-~~---~~----------~~-~~~~~~~ 64 (138)
T cd07813 3 KSRLV-PYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAE-LTVG-FG---GI----------RE-SFTSRVT 64 (138)
T ss_pred EEEEc-CCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEE-EEEe-ec---cc----------cE-EEEEEEE
Confidence 47888 9999999999999999999999999999877543 212233 2221 12 21 01 3334443
Q ss_pred EEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041543 93 TVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTM 172 (179)
Q Consensus 93 ~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~~~l 172 (179)
+++ .+++++...++ ++..+.++.++.|.++ ++|+|+|...++|..+...--+..+++.....|.+.+
T Consensus 65 -~~~-~~~i~~~~~~g--~~~~~~g~w~~~p~~~---------~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f 131 (138)
T cd07813 65 -LVP-PESIEAELVDG--PFKHLEGEWRFKPLGE---------NACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAF 131 (138)
T ss_pred -ecC-CCEEEEEecCC--ChhhceeEEEEEECCC---------CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 56788888776 5667899999999986 6899999999998632222223355666666666666
Q ss_pred HHHh
Q 041543 173 EDAI 176 (179)
Q Consensus 173 e~~l 176 (179)
++.+
T Consensus 132 ~~~~ 135 (138)
T cd07813 132 EKRA 135 (138)
T ss_pred HHHH
Confidence 6554
No 14
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.36 E-value=5.5e-11 Score=88.83 Aligned_cols=127 Identities=13% Similarity=0.273 Sum_probs=86.9
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEE-eecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRY-CAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
+.+++| +||+++||+++.|+.++++|+|.+.+|+...+ +..|+ +.. | .|. .. ....+
T Consensus 3 ~~~i~I-~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~---~--~g~----------~~-~~~~~ 60 (139)
T cd07817 3 EKSITV-NVPVEEVYDFWRDFENLPRFMSHVESVEQLDD-----TRSHWKAKG---P--AGL----------SV-EWDAE 60 (139)
T ss_pred eEEEEe-CCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC-----CceEEEEec---C--CCC----------cE-EEEEE
Confidence 467889 99999999999999999999999998887543 11232 222 2 232 12 45666
Q ss_pred EEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcH--------HHHHHHHH
Q 041543 91 LVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVL--------ADLLQKYD 162 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~--------~~~~~~~~ 162 (179)
++.+++. +.+.|....+.+ .+..++++.+.++ ++|+|++++.+++..+... ..+...++
T Consensus 61 v~~~~~~-~~i~~~~~~~~~---~~~~~~~f~~~~~---------~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (139)
T cd07817 61 ITEQVPN-ERIAWRSVEGAD---PNAGSVRFRPAPG---------RGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLR 127 (139)
T ss_pred EeccCCC-CEEEEEECCCCC---CcceEEEEEECCC---------CCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHH
Confidence 7777775 459999776543 5779999999875 5899999999998643321 12223455
Q ss_pred HHHHHHHHHHH
Q 041543 163 LGLQRMAKTME 173 (179)
Q Consensus 163 ~gl~~m~~~le 173 (179)
..|+++++.+|
T Consensus 128 ~~l~~lk~~aE 138 (139)
T cd07817 128 EDLRRFKQLVE 138 (139)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 15
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.33 E-value=6e-11 Score=89.80 Aligned_cols=112 Identities=12% Similarity=0.018 Sum_probs=76.4
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCC-CCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGT-NGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~-~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
.++++| +||+++||+++.||.++++|+|....+....++ +-.+|....+... .+ ++. ..+..+
T Consensus 3 ~~~~~i-~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~--g~~------------~~~~~~ 66 (144)
T cd07825 3 SVSRTV-DAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMR-LD--GGP------------YRITNH 66 (144)
T ss_pred EEEEEE-eCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEE-cC--CCc------------eEEEEE
Confidence 578899 999999999999999999999853322222222 2346654434332 11 111 256677
Q ss_pred EEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 91 LVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
++++++. ++|+|+......+......++++.+.++ ++|+|++++++...
T Consensus 67 v~~~~p~-~~l~~~~~~~~~~~~~~~~~~~l~~~~~---------g~T~vt~~~~~~g~ 115 (144)
T cd07825 67 VVAFEEN-RLIAWRPGPAGQEPGGHRWRWELEPIGP---------GRTRVTETYDWSAV 115 (144)
T ss_pred EEEECCC-CEEEEEccCCCCCCCceeEEEEEEECCC---------CcEEEEEEEeccCC
Confidence 8999985 6699996532223334567889999886 68999999988865
No 16
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.33 E-value=2.8e-11 Score=90.26 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=78.8
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
..+++| +||+++||++|.|+.++++|+|.+..+.. ... ..|+.+..... + +|. ...+..++
T Consensus 3 ~~s~~I-~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~-~~~--~Gg~~~~~~~~--~--~g~-----------~~~~~~~i 63 (139)
T cd07814 3 TIEREF-DAPPELVWRALTDPELLAQWFGPTTTAEM-DLR--VGGRWFFFMTG--P--DGE-----------EGWVSGEV 63 (139)
T ss_pred EEEEEe-cCCHHHHHHHcCCHHHHHhhhCcCCceEE-ccc--CCceEEEEEEC--C--CCC-----------EEeccEEE
Confidence 468899 99999999999999999999996322222 111 12666655431 1 111 12678899
Q ss_pred EEEecCCcEEEEEEEeccc-ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 92 VTVDHVQRCLIYEMVDGNI-GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~-~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
+++|+. +.|.|+...+.. +...+..++++.|.++ +|.|+|+.++.+.
T Consensus 64 ~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------~T~v~~~~~~~~~ 111 (139)
T cd07814 64 LEVEPP-RRLVFTWAFSDETPGPETTVTVTLEETGG----------GTRLTLTHSGFPE 111 (139)
T ss_pred EEEcCC-CeEEEEecccCCCCCCceEEEEEEEECCC----------CEEEEEEEEccCh
Confidence 999985 679999887653 4557889999999984 7999999888775
No 17
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.24 E-value=8.6e-10 Score=84.70 Aligned_cols=107 Identities=13% Similarity=0.230 Sum_probs=74.4
Q ss_pred EEEEecCCChhhHhHHhhCCCCccccccceeEEEeec-CCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 13 VSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVH-GTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 13 vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~-G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
-+.+| +||+|+||++++|+.++++|.|.+.+++.+. +.+..+|..-.....+. .+. .....-++
T Consensus 5 ~~~~i-~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-----------~~~~~~~v 69 (146)
T cd07824 5 TVWRI-PAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGL---LPY-----------RLRFELRV 69 (146)
T ss_pred EEEEe-cCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEec---CCc-----------EEEEEEEE
Confidence 36788 9999999999999999999999999998866 33445564422221100 111 01445567
Q ss_pred EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
+++++ .+.++|... ++ +. +..+++|.+.+ ++|+|+++.+++..
T Consensus 70 ~~~~p-~~~~~~~~~-g~--~~-~~~~~~~~~~~----------~gt~vt~~~~~~~~ 112 (146)
T cd07824 70 TRIEP-LSLLEVRAS-GD--LE-GVGRWTLAPDG----------SGTVVRYDWEVRTT 112 (146)
T ss_pred EeecC-CcEEEEEEE-Ee--ee-EEEEEEEEEcC----------CCEEEEEEEEEEcC
Confidence 77776 567888853 43 22 47899999975 47999999888863
No 18
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.19 E-value=9.9e-10 Score=82.31 Aligned_cols=109 Identities=12% Similarity=0.130 Sum_probs=74.7
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+.+++| ++|+++||+++.|+.++++|+|.+..++...+ +.....-.+... | .+. .. ..+-++
T Consensus 4 ~~~~~i-~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~--~~~~~~~~~~~~--~--~~~----------~~-~~~~~~ 65 (144)
T cd05018 4 SGEFRI-PAPPEEVWAALNDPEVLARCIPGCESLEKIGP--NEYEATVKLKVG--P--VKG----------TF-KGKVEL 65 (144)
T ss_pred eeEEEe-cCCHHHHHHHhcCHHHHHhhccchhhccccCC--CeEEEEEEEEEc--c--EEE----------EE-EEEEEE
Confidence 567889 99999999999999999999999988766442 111111111111 1 010 01 235567
Q ss_pred EEEecCCcEEEEEEEec-ccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 92 VTVDHVQRCLIYEMVDG-NIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~-~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
.++++. +.+.+..... ...+..+..++++.|. + ++|+|+|+.++++.
T Consensus 66 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~-~---------~gT~v~~~~~~~~~ 113 (144)
T cd05018 66 SDLDPP-ESYTITGEGKGGAGFVKGTARVTLEPD-G---------GGTRLTYTADAQVG 113 (144)
T ss_pred EecCCC-cEEEEEEEEcCCCceEEEEEEEEEEec-C---------CcEEEEEEEEEEEc
Confidence 777764 5677776643 2346789999999998 4 58999999999864
No 19
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.15 E-value=3.2e-09 Score=82.84 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=88.2
Q ss_pred EEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEE
Q 041543 13 VSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLV 92 (179)
Q Consensus 13 vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~ 92 (179)
-+++| ++|++.||+++.|+.++|.|+|.+..++.++.++.+.| +|..... + .+|. ..+|..|+
T Consensus 5 ~si~i-~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~-~r~~i~~--~-~~g~----------~~~w~s~~-- 67 (146)
T cd08860 5 NSIVI-DAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR-FRLTMHP--D-ANGT----------VWSWVSER-- 67 (146)
T ss_pred eEEEE-cCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE-EEEEEEe--c-cCCE----------EEEEEEEE--
Confidence 47899 99999999999999999999999999988764333344 4432111 0 1221 12232221
Q ss_pred EEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCc------HHHHHHHHHHHHH
Q 041543 93 TVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLV------LADLLQKYDLGLQ 166 (179)
Q Consensus 93 ~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~------~~~~~~~~~~gl~ 166 (179)
..|+..+++.++ .....++..-.++.+++|.++ +|+|++..+++...+.. ...+...+...|+
T Consensus 68 ~~~~~~~~i~~~-~~~~~p~~~m~~~W~f~~~~~----------gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (146)
T cd08860 68 TLDPVNRTVRAR-RVETGPFAYMNIRWEYTEVPE----------GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMA 136 (146)
T ss_pred EecCCCcEEEEE-EecCCCcceeeeeEEEEECCC----------CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHH
Confidence 257777777774 222346888899999999964 59999998877543222 2233344666677
Q ss_pred HHHHHHHH
Q 041543 167 RMAKTMED 174 (179)
Q Consensus 167 ~m~~~le~ 174 (179)
+|++.+|.
T Consensus 137 ~Lk~~aE~ 144 (146)
T cd08860 137 RIKKKIEA 144 (146)
T ss_pred HHHHHhhh
Confidence 77776665
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=6.3e-09 Score=79.05 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=78.3
Q ss_pred EEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCC--CCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 13 VSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNG--EPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 13 vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g--~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
.+++| +||+++||++++|+.++++|.|.+.+++.+...++ .+|+.-...... .|. ...| +-+
T Consensus 3 ~s~~I-~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~----~~~----------~~~w-~~~ 66 (137)
T cd07820 3 RSTVI-PAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH----FGI----------PQRW-TTE 66 (137)
T ss_pred EEEEc-CCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe----cCC----------ceEE-EEE
Confidence 57889 99999999999999999999999988877532222 245433333321 121 1334 555
Q ss_pred EEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 91 LVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
++++++ .+.|++++..++ +..+..++++.+.+ ++|+|+++++|+++
T Consensus 67 it~~~p-~~~f~~~~~~G~--~~~w~h~~~f~~~~----------~gT~vt~~v~~~~p 112 (137)
T cd07820 67 ITEVEP-PRRFVDEQVSGP--FRSWRHTHRFEAIG----------GGTLMTDRVEYRLP 112 (137)
T ss_pred EEEEcC-CCeEEEEeccCC--chhCEEEEEEEECC----------CceEEEEEEEEeCC
Confidence 788887 467999977654 55688899999886 47999999999985
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.97 E-value=3.1e-08 Score=73.76 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=76.7
Q ss_pred cCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEEEecC
Q 041543 18 SRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHV 97 (179)
Q Consensus 18 ~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~~D~~ 97 (179)
=+||+++||++++|+.++++|+|.+..|+.+..+++.....-.+.. .+. .. ....++....+.
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~------~~~----------~~-~~~~~~~~~~~~ 63 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKF------GGI----------KR-SWTSRVTEDPPE 63 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECT------TTT----------CE-EEEEEEEEECTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEec------CCE----------EE-EEEEEEEEEEee
Confidence 0899999999999999999999999999887654331111111222 121 12 334555555443
Q ss_pred CcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041543 98 QRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTM 172 (179)
Q Consensus 98 ~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~~~l 172 (179)
. +.+....+ +++.+.++.++.+.++.++ ..+|.++..+.++|.......-+..+++..+..+.++|
T Consensus 64 ~--~~~~~~~g--~~~~~~g~W~~~~~~~~~~-----g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 64 R--IRFEQISG--PFKSFEGSWRFEPLGGNEG-----GTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp T--EEEESSET--TEEEEEEEEEEEEETTECC-----EEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred e--eeeeecCC--CchhcEEEEEEEECCCCcC-----CCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 3 66666655 5789999999999984100 02445555555655433333233355666666665554
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.92 E-value=4e-08 Score=75.41 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=66.8
Q ss_pred EEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEE
Q 041543 14 STRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVT 93 (179)
Q Consensus 14 s~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~ 93 (179)
+.+| +||+++||++|+|+.+++.|.|++.+.+.. |++.-...++. ...++. +. . ..+=++.+
T Consensus 4 ~~~v-~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~-~~~~~~~~~~~-~~g~~~---~~-----------~-~~~~~~~~ 65 (146)
T cd07823 4 EFTV-PAPPDRVWALLLDIERVAPCLPGASLTEVE-GDDEYKGTVKV-KLGPIS---AS-----------F-KGTARLLE 65 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhcCCCceecccc-CCCeEEEEEEE-EEccEE---EE-----------E-EEEEEEEe
Confidence 5678 999999999999999999999988766542 32111112221 111010 00 0 01114666
Q ss_pred EecCCcEEEEEEEeccc---ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcC
Q 041543 94 VDHVQRCLIYEMVDGNI---GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDP 148 (179)
Q Consensus 94 ~D~~~r~~~Y~~~~~~~---~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p 148 (179)
+++..+.+++...+.+. +......++++.|.+ ++|+|+|..+++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~l~~~~----------~gT~v~~~~~~~~ 113 (146)
T cd07823 66 DDEAARRAVLEATGKDARGQGTAEATVTLRLSPAG----------GGTRVTVDTDLAL 113 (146)
T ss_pred ccCCCcEEEEEEEEecCCCcceEEEEEEEEEEecC----------CcEEEEEEEEEEE
Confidence 66457888887665322 222467788888843 5899999987763
No 23
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.91 E-value=6.8e-08 Score=72.78 Aligned_cols=134 Identities=15% Similarity=0.153 Sum_probs=83.2
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+.+++| +||+++||++++|+..+++|++... +....+ .+..|.++ . ++..+. ...=++
T Consensus 4 ~~~i~i-~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~-~~~~g~~~---~---~~~~~~-------------~~~~~i 61 (145)
T cd08898 4 ERTILI-DAPRERVWRALTDPEHFGQWFGVKL-GPFVVG-EGATGEIT---Y---PGYEHG-------------VFPVTV 61 (145)
T ss_pred EEEEEe-cCCHHHHHHHhcChhhhhhcccccC-CCcccC-CcceeEEe---c---CCCCcc-------------ceEEEE
Confidence 467889 9999999999999999999998542 211111 12223222 2 100111 345578
Q ss_pred EEEecCCcEEEEEEEecc----c---ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEE-EcCCCCCcHHHHHHHHHH
Q 041543 92 VTVDHVQRCLIYEMVDGN----I---GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFT-VDPVEGLVLADLLQKYDL 163 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~----~---~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~-~~p~~g~~~~~~~~~~~~ 163 (179)
+++++ .+.|.|+..... . .......+++|.+.+ ++|+|+++.. +........+.....+..
T Consensus 62 ~~~~p-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~gT~vt~~~~~~~~~~~~~~~~~~~~~~~ 130 (145)
T cd08898 62 VEVDP-PRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIA----------GGTLLTVTESGFDALPAERRAEAYRMNEG 130 (145)
T ss_pred EEeCC-CcEEEEEecCCCcccccccCCCCceEEEEEEEecC----------CcEEEEEEEcCCCCCChHHHHHHHHhhhh
Confidence 88988 477999876432 1 122456899999986 4799999854 332211111223455777
Q ss_pred HHHHHHHHHHHHhhc
Q 041543 164 GLQRMAKTMEDAIVQ 178 (179)
Q Consensus 164 gl~~m~~~le~~l~~ 178 (179)
|...+...|+++|.+
T Consensus 131 gw~~~l~~L~~~le~ 145 (145)
T cd08898 131 GWDEQLENLVAYVEA 145 (145)
T ss_pred hHHHHHHHHHHHhcC
Confidence 777777777777753
No 24
>PRK10724 hypothetical protein; Provisional
Probab=98.87 E-value=7.8e-08 Score=76.33 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=89.8
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+.+++| ++|++++|+++.|..++++|+|.+..++.++-.+++ ...+...++ .|. ......+.
T Consensus 18 ~~~~~v-~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~-~~a~l~v~~-----~g~-----------~~~f~srv 79 (158)
T PRK10724 18 SRTALV-PYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ-MTAAVDVSK-----AGI-----------SKTFTTRN 79 (158)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE-EEEEEEEee-----CCc-----------cEEEEEEE
Confidence 457888 999999999999999999999999998886543222 122221111 222 11333344
Q ss_pred EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHH
Q 041543 92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKT 171 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~~~ 171 (179)
.- ++. +++.+.+++| +|+.+.+..++.|.++ ++|.|++..+|+.........+..+++.....|.+.
T Consensus 80 ~~-~~~-~~I~~~~~~G--pF~~l~g~W~f~p~~~---------~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~A 146 (158)
T PRK10724 80 QL-TSN-QSILMQLVDG--PFKKLIGGWKFTPLSQ---------EACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQA 146 (158)
T ss_pred Ee-cCC-CEEEEEecCC--ChhhccceEEEEECCC---------CCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHH
Confidence 33 443 4799998887 5778999999999986 579999998887543222233345666666666666
Q ss_pred HHHH
Q 041543 172 MEDA 175 (179)
Q Consensus 172 le~~ 175 (179)
+++-
T Consensus 147 F~~R 150 (158)
T PRK10724 147 FTVR 150 (158)
T ss_pred HHHH
Confidence 6653
No 25
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.76 E-value=3.5e-07 Score=67.99 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=77.9
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
..++.| +||+++||++++|+.++++|.+... + ..+...-|.++..... + ... .+.=++
T Consensus 3 ~~~~~i-~ap~e~Vw~~~td~~~~~~W~~~~~-~---~~~~~~G~~~~~~~~~--~--~~~-------------~~~~~v 60 (136)
T cd08893 3 VYVTYI-RATPEKVWQALTDPEFTRQYWGGTT-V---ESDWKVGSAFEYRRGD--D--GTV-------------DVEGEV 60 (136)
T ss_pred EEEEEe-cCCHHHHHHHHcCchhhhheecccc-c---ccCCcCCCeEEEEeCC--C--ccc-------------ccceEE
Confidence 467899 9999999999999999999987632 1 2222222355543321 0 011 234467
Q ss_pred EEEecCCcEEEEEEEeccc----ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 041543 92 VTVDHVQRCLIYEMVDGNI----GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQR 167 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~----~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~ 167 (179)
+++++ .+.|+|+...... +......++.+.+.+ ++|+++.+.+..+... .+......|...
T Consensus 61 ~~~~~-~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~----------~~t~l~~~~~~~~~~~----~~~~~~~~gw~~ 125 (136)
T cd08893 61 LESDP-PRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVG----------DVVKLTVTHDGFPPGS----PTLEGVSGGWPA 125 (136)
T ss_pred EEecC-CCeEEEEEecCCCcccCCCCCEEEEEEEEecC----------CcEEEEEEecCCCCch----hHHHhhhcCHHH
Confidence 77876 4668787664322 233678889998876 4788888866543221 233344455555
Q ss_pred HHHHHHHHh
Q 041543 168 MAKTMEDAI 176 (179)
Q Consensus 168 m~~~le~~l 176 (179)
+.+.|++.|
T Consensus 126 ~l~~Lk~~~ 134 (136)
T cd08893 126 ILSSLKTLL 134 (136)
T ss_pred HHHHHHHHh
Confidence 555555544
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.73 E-value=2.4e-07 Score=72.37 Aligned_cols=125 Identities=11% Similarity=0.203 Sum_probs=81.1
Q ss_pred EEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCc-EEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543 11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPD-CIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE 89 (179)
Q Consensus 11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G-~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E 89 (179)
=.++++| +||+++||++|.|+.++++|++.. .. +-.+| .+|..... + .+. ....
T Consensus 13 i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~~~------~~-~~~~G~~~~~~~~~--~--~~~-------------~~~~ 67 (157)
T cd08899 13 LRFERLL-PAPIEDVWAALTDPERLARWFAPG------TG-DLRVGGRVEFVMDD--E--EGP-------------NATG 67 (157)
T ss_pred EEEEEec-CCCHHHHHHHHcCHHHHHhhcCCC------CC-CcccCceEEEEecC--C--CCC-------------ccce
Confidence 3577888 999999999999999999999832 11 12233 44443321 0 011 4567
Q ss_pred EEEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHH
Q 041543 90 RLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMA 169 (179)
Q Consensus 90 ~L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~ 169 (179)
+++++|+. ++|.|+...+. .....+++|.+.+ ++|.|+.+.+..+.. .....+..-....|+.|+
T Consensus 68 ~v~e~~p~-~~l~~~~~~~~---~~~~~~~~l~~~~----------~gT~v~~~~~~~~~~-~~~~~~~~GW~~~L~~Lk 132 (157)
T cd08899 68 TILACEPP-RLLAFTWGEGG---GESEVRFELAPEG----------DGTRLTLTHRLLDER-FGAGAVGAGWHLCLDVLE 132 (157)
T ss_pred EEEEEcCC-cEEEEEecCCC---CCceEEEEEEEcC----------CCEEEEEEEeccCch-hhhhhhcccHHHHHHHHH
Confidence 88899885 67999877544 3456788898866 479999987776543 122223333445566666
Q ss_pred HHHHHH
Q 041543 170 KTMEDA 175 (179)
Q Consensus 170 ~~le~~ 175 (179)
+.+|+.
T Consensus 133 ~~~e~~ 138 (157)
T cd08899 133 AALEGG 138 (157)
T ss_pred HHHcCC
Confidence 666543
No 27
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.61 E-value=1.8e-06 Score=65.70 Aligned_cols=135 Identities=9% Similarity=0.079 Sum_probs=80.9
Q ss_pred EEEEEecCCChhhHhHHhhCCCCcccccc-ceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFH-SLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p-~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
.++..| +||+++||.+++|...+.+|++ .--++.....+...-|..|+.... | +|. .-...=+
T Consensus 3 ~~~r~i-~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~--~--~g~-----------~~~~~g~ 66 (139)
T cd08894 3 VTTRVI-DAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHG--P--DGT-----------DYPNRIV 66 (139)
T ss_pred EEEEEe-CCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEEC--C--CCC-----------EecceEE
Confidence 578899 9999999999999999999974 111121112111122455654321 2 332 1123347
Q ss_pred EEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHH
Q 041543 91 LVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAK 170 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~~ 170 (179)
++++++. ++|.|+....+ .....++++.|.+ ++|+++.+..+.+.+ ...+.+...+..|...+..
T Consensus 67 v~e~~p~-~~l~~t~~~~~---~~~~v~~~~~~~~----------~gT~ltl~~~~~~~~-~~~~~~~~~~~~Gw~~~l~ 131 (139)
T cd08894 67 FLEIEPP-ERIVYDHGSGP---PRFRLTVTFEEQG----------GKTRLTWRQVFPTAA-ERCEKIKFGAVEGNEQTLD 131 (139)
T ss_pred EEEEcCC-CEEEEEeccCC---CcEEEEEEEEECC----------CCEEEEEEEEcCCHH-HHHHHHHhCHHHHHHHHHH
Confidence 8889984 67999876542 1356889999876 489999887654321 1011222345566666666
Q ss_pred HHHHHhh
Q 041543 171 TMEDAIV 177 (179)
Q Consensus 171 ~le~~l~ 177 (179)
.|+++|.
T Consensus 132 ~L~~~l~ 138 (139)
T cd08894 132 RLAAYLA 138 (139)
T ss_pred HHHHHHh
Confidence 6666553
No 28
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.58 E-value=3.8e-06 Score=64.43 Aligned_cols=139 Identities=9% Similarity=0.000 Sum_probs=86.0
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccce-eEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSL-ATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i-~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
.++.++ +||+++||++++|...+.+|...- ..+.....+.-.-|..+..... + +|. ...+.=+
T Consensus 3 ~i~r~~-~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~--~--~g~-----------~~~~~g~ 66 (142)
T cd07826 3 VITREF-DAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRA--P--DGE-----------EMGFHGV 66 (142)
T ss_pred EEEEEE-CCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEEC--C--CCC-----------EecceEE
Confidence 467889 999999999999999999997532 1222222221122456654321 1 221 1134456
Q ss_pred EEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHH
Q 041543 91 LVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAK 170 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~~ 170 (179)
++++++. ++|.|+....+.+-.....++++.+.+ ++|+++.+..+.... ........-+..|...+..
T Consensus 67 ~~ei~p~-~~l~~t~~~~~~~~~~s~v~~~l~~~~----------~gT~l~l~~~~~~~~-~~~~~~~~~~~~Gw~~~l~ 134 (142)
T cd07826 67 YHEVTPP-ERIVQTEEFEGLPDGVALETVTFTELG----------GRTRLTATSRYPSKE-ARDGVLASGMEEGMEESYD 134 (142)
T ss_pred EEEEcCC-CEEEEEeEecCCCCCceEEEEEEEECC----------CCEEEEEEEEeCCHH-HHHHHHHhhHHHHHHHHHH
Confidence 8889884 668887654333223457789999976 489999885553211 1111333457778888888
Q ss_pred HHHHHhhc
Q 041543 171 TMEDAIVQ 178 (179)
Q Consensus 171 ~le~~l~~ 178 (179)
+|+++|.+
T Consensus 135 ~L~~~l~~ 142 (142)
T cd07826 135 RLDELLAS 142 (142)
T ss_pred HHHHHHhC
Confidence 88888764
No 29
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.56 E-value=1.2e-05 Score=64.27 Aligned_cols=142 Identities=12% Similarity=0.074 Sum_probs=85.1
Q ss_pred eEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCC-CCcEEEEeecccccCCCCCCCCCCCCCCCCCceeE
Q 041543 10 EGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNG-EPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSK 88 (179)
Q Consensus 10 ~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g-~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~ 88 (179)
.=+++.+| ++|+++||+++.|....++|.|.+..|+.++..+. ...+...+.. +.|-.+. ..+.
T Consensus 42 ~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~-p~pvs~R-------------dfv~ 106 (195)
T cd08876 42 EFKAVAEV-DASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDL-PWPVKDR-------------DMVL 106 (195)
T ss_pred EEEEEEEE-eCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEec-ccccCCc-------------eEEE
Confidence 34778889 89999999999999999999999999988764322 2122222221 1110011 1332
Q ss_pred EEEEEEecCCcEEEEEEEeccc---------ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHH-
Q 041543 89 ERLVTVDHVQRCLIYEMVDGNI---------GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLL- 158 (179)
Q Consensus 89 E~L~~~D~~~r~~~Y~~~~~~~---------~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~- 158 (179)
.+-...+.....+...+...+. .+..+.+.+.++|.++ ++|+|++...++|. |..+.-+.
T Consensus 107 ~~~~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~---------~~t~vt~~~~~dp~-g~iP~~lv~ 176 (195)
T cd08876 107 RSTTEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN---------GKTRVTYQAYADPG-GSIPGWLAN 176 (195)
T ss_pred EEEEEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCC---------CeEEEEEEEEeCCC-CCCCHHHHH
Confidence 2212222212233333332211 2567778889999986 68999999999996 44444433
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 041543 159 QKYDLGLQRMAKTMEDAI 176 (179)
Q Consensus 159 ~~~~~gl~~m~~~le~~l 176 (179)
..+...+..+.+.|++.+
T Consensus 177 ~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 177 AFAKDAPYNTLENLRKQL 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 455555656666665543
No 30
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.50 E-value=3.3e-06 Score=66.52 Aligned_cols=107 Identities=17% Similarity=0.337 Sum_probs=74.6
Q ss_pred EEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEE
Q 041543 14 STRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVT 93 (179)
Q Consensus 14 s~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~ 93 (179)
+-+| ++|+++||+.|.|+..+..-+|++.+.+. .|+ .-...+|.-.+ .+. +. . ..+=++..
T Consensus 6 ~f~V-~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~-~g~-e~~~~v~l~ig-~l~---~~-----------~-~g~~~~~~ 66 (146)
T COG3427 6 TFRV-AAPPEAVWEFLNDPEQVAACIPGVQSVET-NGD-EYTAKVKLKIG-PLK---GT-----------F-SGRVRFVN 66 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhhcCCcceeee-cCC-eEEEEEEEeec-cee---EE-----------E-EEEEEEcc
Confidence 4567 99999999999999999999999977665 553 22233333222 110 10 1 23445667
Q ss_pred EecCCcEEEEEEEecc-cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 94 VDHVQRCLIYEMVDGN-IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 94 ~D~~~r~~~Y~~~~~~-~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
+|+..++++-...++. -++.+..+.+.|.|.++ +|++.|.+..+-.
T Consensus 67 v~~~~~~~~i~g~G~~~~g~~~~~~~v~l~~~g~----------gt~v~w~~~~~~g 113 (146)
T COG3427 67 VDEPPRSITINGSGGGAAGFADGTVDVQLEPSGE----------GTRVNWFADANVG 113 (146)
T ss_pred ccCCCcEEEEEeecccccceeeeeeEEEEEEcCC----------CcEEEEEEEcccc
Confidence 7777888777766522 36778899999999985 5999999988753
No 31
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.43 E-value=2.8e-05 Score=59.61 Aligned_cols=140 Identities=13% Similarity=0.114 Sum_probs=80.0
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccce-eEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSL-ATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i-~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
.++..| +||+++||+++.|...+.+|++-- ..|.....+...-|..+......-+ ..|. -.+......=+
T Consensus 3 ~~~r~i-~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~-~~g~-------~~g~~~~~~g~ 73 (146)
T cd08895 3 RLHRVI-AAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDP-SVGK-------TTGNTDVFGGR 73 (146)
T ss_pred EEEEEE-CCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCc-cccc-------cCCcEeeeEEE
Confidence 578899 999999999999999999997621 1222222221122344432211000 0010 00000133346
Q ss_pred EEEEecCCcEEEEEEEecc--cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHH
Q 041543 91 LVTVDHVQRCLIYEMVDGN--IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRM 168 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~~--~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m 168 (179)
++++++. ++|.|+..... .+ .....++++.+.+ ++|+++++...-+.. ........|-..+
T Consensus 74 v~~v~p~-~~i~~~~~~~~~~~~-~~~~v~~~~~~~~----------~~T~lt~~~~~~~~~-----~~~~~~~~GW~~~ 136 (146)
T cd08895 74 FLELVPN-ERIVYTDVFDDPSLS-GEMTMTWTLSPVS----------GGTDVTIVQSGIPDG-----IPPEDCELGWQES 136 (146)
T ss_pred EEEEcCC-CEEEEEEEecCCCCC-ceEEEEEEEEecC----------CCEEEEEEEeCCCch-----hhhhHHHHHHHHH
Confidence 8889885 67999865321 22 2457889998886 489999998643321 1123555666666
Q ss_pred HHHHHHHhh
Q 041543 169 AKTMEDAIV 177 (179)
Q Consensus 169 ~~~le~~l~ 177 (179)
...|++.|.
T Consensus 137 l~~L~~~le 145 (146)
T cd08895 137 LANLAALVE 145 (146)
T ss_pred HHHHHHHhc
Confidence 666666654
No 32
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.40 E-value=2.1e-05 Score=59.40 Aligned_cols=129 Identities=15% Similarity=0.148 Sum_probs=78.4
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeE--EEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLAT--SYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE 89 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~--~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E 89 (179)
.+++.| +||+++||++++|-..+.+|+..... |.....+...-|..|..... + +|. ......=
T Consensus 3 ~~~~~~-~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~--~--~g~----------~~~~~~g 67 (133)
T cd08897 3 TVETTV-DAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEA--K--DGS----------MGFDFEG 67 (133)
T ss_pred EEEEEe-CCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEc--C--CCC----------cccccce
Confidence 467889 99999999999999999999653221 11112221122455554321 1 221 0012345
Q ss_pred EEEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHH
Q 041543 90 RLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMA 169 (179)
Q Consensus 90 ~L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~ 169 (179)
+++++++ .++|.|+..+ ....++++.+.+ ++|+++-++ .+...... .....|...+.
T Consensus 68 ~~~ei~p-~~~l~~~~~~------~~~v~~~l~~~~----------~gT~l~l~~--~~~~~~~~----~~~~~GW~~~l 124 (133)
T cd08897 68 TYTEVEP-HKLIEYTMED------GREVEVEFTEEG----------DGTKVVETF--DAENENPV----EMQRQGWQAIL 124 (133)
T ss_pred EEEEECC-CCEEEEEcCC------CCEEEEEEEECC----------CCEEEEEEE--CCCCCCcH----HHHHHHHHHHH
Confidence 6788888 4779998643 246899999976 479998764 33322222 33556666666
Q ss_pred HHHHHHhhc
Q 041543 170 KTMEDAIVQ 178 (179)
Q Consensus 170 ~~le~~l~~ 178 (179)
..|+++|.+
T Consensus 125 ~~L~~~le~ 133 (133)
T cd08897 125 DNFKKYVES 133 (133)
T ss_pred HHHHHHhhC
Confidence 677766653
No 33
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.26 E-value=2.5e-05 Score=60.10 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=64.8
Q ss_pred EEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEE
Q 041543 14 STRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVT 93 (179)
Q Consensus 14 s~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~ 93 (179)
+.+| ++|+++||++|.|+..+.+-+|++.+.+... + .--+.++. ...++. + .+ ..+=++.+
T Consensus 2 s~~v-~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~-~~~~~~~v-~vG~i~---~-----------~~-~g~~~~~~ 62 (140)
T PF06240_consen 2 SFEV-PAPPEKVWAFLSDPENLARCIPGVESIEKVG-D-EYKGKVKV-KVGPIK---G-----------TF-DGEVRITE 62 (140)
T ss_dssp EEEE-CS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-T-EEEEEEEE-ESCCCE---E-----------EE-EEEEEEEE
T ss_pred cEEe-cCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-c-EEEEEEEE-EeccEE---E-----------EE-EEEEEEEE
Confidence 5678 9999999999999999999999998877644 2 21222331 111111 0 01 33446778
Q ss_pred EecCCcEEEEEEEeccc-ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcC
Q 041543 94 VDHVQRCLIYEMVDGNI-GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDP 148 (179)
Q Consensus 94 ~D~~~r~~~Y~~~~~~~-~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p 148 (179)
+|++++.. .++..... .-.+-.+.+++...++ ++|.|.|+.+++-
T Consensus 63 ~~~~~~~~-~~~~g~g~~~~~~~~~~~~~~~~~~---------~~T~v~~~~~~~~ 108 (140)
T PF06240_consen 63 IDPPESYT-LEFEGRGRGGGSSASANITLSLEDD---------GGTRVTWSADVEV 108 (140)
T ss_dssp EETTTEEE-EEEEEEECTCCEEEEEEEEEEECCC---------TCEEEEEEEEEEE
T ss_pred cCCCcceE-eeeeccCCccceEEEEEEEEEcCCC---------CCcEEEEEEEEEE
Confidence 88876652 44444222 2234456677776655 3599999988874
No 34
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.23 E-value=7.9e-05 Score=57.09 Aligned_cols=135 Identities=10% Similarity=0.005 Sum_probs=80.6
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccc----eeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCcee
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHS----LATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWS 87 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~----i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 87 (179)
.+++.| +||+++||+++.|...+.+|++- +..|+. +...-|..|+.... | +|. .. ..
T Consensus 3 ~i~r~i-~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~---d~~~GG~~~~~~~~--~--~g~----------~~-~~ 63 (146)
T cd08896 3 VLSRTI-DAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL---DLRPGGAFRTVMRG--P--DGE----------EF-PN 63 (146)
T ss_pred EEEEEe-CCCHHHHHHHcCCHHHHhccCCCCCccceEEEE---EeecCcEEEEEEEC--C--CCC----------Ee-cc
Confidence 467889 99999999999999999999652 223333 11122456655321 1 332 11 23
Q ss_pred EEEEEEEecCCcEEEEEEEecc--cc-eee-EEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHH-HHHH
Q 041543 88 KERLVTVDHVQRCLIYEMVDGN--IG-FKS-YVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLL-QKYD 162 (179)
Q Consensus 88 ~E~L~~~D~~~r~~~Y~~~~~~--~~-~~~-y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~-~~~~ 162 (179)
.=+++++|+. ++|.|+-...+ .+ -.. -..++++.+.+ ++|+++.+...... ...+... .-+.
T Consensus 64 ~g~v~~i~p~-~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~----------~gT~Ltl~~~~~~~--~~~~~~~~~~~~ 130 (146)
T cd08896 64 PGCFLEVVPG-ERLVFTDALTPGWRPAEKPFMTAIITFEDEG----------GGTRYTARARHWTE--ADRKQHEEMGFH 130 (146)
T ss_pred eEEEEEEeCC-CEEEEEEeecCCcCCCCCCcEEEEEEEEecC----------CcEEEEEEEEeCCH--HHHHHHHHcCHH
Confidence 4568899985 66888753321 11 111 36789999876 58999876443221 1111111 1145
Q ss_pred HHHHHHHHHHHHHhhc
Q 041543 163 LGLQRMAKTMEDAIVQ 178 (179)
Q Consensus 163 ~gl~~m~~~le~~l~~ 178 (179)
.|...+...|+++|.+
T Consensus 131 ~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 131 DGWGTAADQLAALAES 146 (146)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777777777777754
No 35
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.18 E-value=0.00019 Score=54.74 Aligned_cols=132 Identities=8% Similarity=0.060 Sum_probs=76.5
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccc-----eeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCce
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHS-----LATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSW 86 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~-----i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~ 86 (179)
.++..| +||+++||++++|-..+.+|+.. +..+.. +...-|..+..... + +|. ...
T Consensus 3 ~i~r~~-~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~---d~~~Gg~~~~~~~~--~--~g~-----------~~~ 63 (143)
T cd08900 3 TLERTY-PAPPERVFAAWSDPAARARWFVPSPDWTVLEDEF---DFRVGGREVSRGGP--K--GGP-----------EIT 63 (143)
T ss_pred EEEEEe-CCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEE---ecCCCCEEEEEEEC--C--CCC-----------EEe
Confidence 467889 99999999999999999999753 223332 11112455554321 1 332 113
Q ss_pred eEEEEEEEecCCcEEEEEEEec--ccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHH
Q 041543 87 SKERLVTVDHVQRCLIYEMVDG--NIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLG 164 (179)
Q Consensus 87 ~~E~L~~~D~~~r~~~Y~~~~~--~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~g 164 (179)
..=+++++++. ++|.|+-... ..+......+++|.+.+ ++|+++-....-..+.. + ....+..|
T Consensus 64 ~~g~~~~~~p~-~~l~~t~~~~~~~~~~~~s~v~~~l~~~~----------~gT~l~~~~~~~~~~~~--~-~~~~~~~G 129 (143)
T cd08900 64 VEARYHDIVPD-ERIVYTYTMHIGGTLLSASLATVEFAPEG----------GGTRLTLTEQGAFLDGD--D-DPAGREQG 129 (143)
T ss_pred eeEEEEEecCC-ceEEEEEeeccCCccccceEEEEEEEECC----------CCEEEEEEEEEeccccc--c-hhhhHHHH
Confidence 34578889884 6688775432 12222356889999876 47999988554222111 1 12233444
Q ss_pred HHHHHHHHHHHh
Q 041543 165 LQRMAKTMEDAI 176 (179)
Q Consensus 165 l~~m~~~le~~l 176 (179)
-..+...|++.|
T Consensus 130 W~~~l~~L~~~l 141 (143)
T cd08900 130 TAALLDNLAAEL 141 (143)
T ss_pred HHHHHHHHHHHH
Confidence 444555555544
No 36
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.17 E-value=0.00012 Score=54.99 Aligned_cols=99 Identities=10% Similarity=0.056 Sum_probs=64.1
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
.+++.| +||+++||+++++-..+.+|+... +.. +-..| |..+... | .+.=++
T Consensus 3 ~~~r~i-~ap~e~Vw~A~T~~e~l~~W~~~~--~~~-d~~~G--G~~~~~~--------g--------------~~~g~~ 54 (126)
T cd08892 3 SLTETF-QVPAEELYEALTDEERVQAFTRSP--AKV-DAKVG--GKFSLFG--------G--------------NITGEF 54 (126)
T ss_pred EEEEEE-CCCHHHHHHHHCCHHHHHhhcCCC--cee-cCCCC--CEEEEeC--------C--------------ceEEEE
Confidence 467889 999999999999999999997532 222 11112 4555432 2 123357
Q ss_pred EEEecCCcEEEEEEEecccc-eeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 92 VTVDHVQRCLIYEMVDGNIG-FKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~-~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
+++++. ++|+|+-.....+ -..-..++++.+.+ ++|+++-+...-+.
T Consensus 55 ~~i~p~-~~l~~~w~~~~~~~~~~s~v~~~l~~~~----------~gT~ltl~~~g~~~ 102 (126)
T cd08892 55 VELVPG-KKIVQKWRFKSWPEGHYSTVTLTFTEKD----------DETELKLTQTGVPA 102 (126)
T ss_pred EEEcCC-CEEEEEEEcCCCCCCCcEEEEEEEEECC----------CCEEEEEEEECCCC
Confidence 888874 6687776533222 12356888888875 58998888665553
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.14 E-value=0.00016 Score=55.60 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=75.1
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccc--------eeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCC
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHS--------LATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAA 83 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~--------i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~ 83 (179)
+.+++| +||+++||++++| .+.+|.+. ...|+.. -..| |..+.. . + +|.
T Consensus 3 ~~~~~i-~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d-~~~G--G~~~~~-~---~--~g~----------- 59 (149)
T cd08891 3 RKSVTV-PAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFE-PRAG--GRWYEI-G---E--DGT----------- 59 (149)
T ss_pred EEEEEe-cCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEc-ccCC--cEEEEe-c---C--CCc-----------
Confidence 568899 9999999999999 58888642 1344441 1111 445432 2 1 332
Q ss_pred CceeEEEEEEEecCCcEEEEEEEecc-c-ce--eeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCC--CcHHHH
Q 041543 84 CSWSKERLVTVDHVQRCLIYEMVDGN-I-GF--KSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEG--LVLADL 157 (179)
Q Consensus 84 ~~~~~E~L~~~D~~~r~~~Y~~~~~~-~-~~--~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g--~~~~~~ 157 (179)
. ...=+++++++. ++|+|+-.... . +. ..-..+++|.+.++ ++|+++-+...-+..+ +.....
T Consensus 60 ~-~~~g~v~~v~p~-~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~---------~gT~ltl~~~~~~~~~~~~~~~~~ 128 (149)
T cd08891 60 E-CEWGTVLAWEPP-SRLVFTWQINADWRPDPDKASEVEVRFEAVGA---------EGTRVELEHRGFERHGDGWEAAAM 128 (149)
T ss_pred E-eceEEEEEEcCC-CEEEEEeccCCCcCcCCCCceEEEEEEEECCC---------CCeEEEEEEecccccCcchhhHHH
Confidence 1 224578889985 66888755211 1 11 13478899999873 4799988754432211 122222
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 041543 158 LQKYDLGLQRMAKTMEDAIV 177 (179)
Q Consensus 158 ~~~~~~gl~~m~~~le~~l~ 177 (179)
..-+..|-..+...|++.|+
T Consensus 129 ~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 129 RMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred HhcccCcHHHHHHHHHHHhc
Confidence 33344555555555555543
No 38
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.12 E-value=0.0001 Score=55.99 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=62.2
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+.++.| +||+++||+++++...+.+|.+.-...+... | |.++.... + .++ ...=++
T Consensus 3 ~~~~~i-~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~~---G--g~~~~~~~---~-~~~--------------~~~g~~ 58 (136)
T cd08901 3 KTAMLI-RRPVAEVFEAFVDPEITTKFWFTGSSGRLEE---G--KTVTWDWE---M-YGA--------------SVPVNV 58 (136)
T ss_pred eEEEEe-cCCHHHHHHHhcCHHHhccccccCCCccccC---C--CEEEEEEE---c-cCC--------------ceEEEE
Confidence 567889 9999999999999999999855322222211 1 34443221 0 011 122367
Q ss_pred EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEE
Q 041543 92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFT 145 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~ 145 (179)
+++++. ++|.|+..... ..-..++++.+.++ ++|+++-+-.
T Consensus 59 ~~~~p~-~~l~~~w~~~~---~~s~v~~~l~~~~~---------ggT~ltl~~~ 99 (136)
T cd08901 59 LEIEPN-KRIVIEWGDPG---EPTTVEWTFEELDD---------GRTFVTITES 99 (136)
T ss_pred EEEcCC-CEEEEEecCCC---CCEEEEEEEEECCC---------CcEEEEEEEC
Confidence 888874 77989876431 12457899999874 5798887733
No 39
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.12 E-value=9e-05 Score=54.16 Aligned_cols=121 Identities=12% Similarity=0.174 Sum_probs=73.1
Q ss_pred CCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEEEecCC
Q 041543 19 RATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQ 98 (179)
Q Consensus 19 ~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~~D~~~ 98 (179)
+||+++||+++++...+.+|.+ ...+.... ..| |.+|... + +|. .....=+++++++.
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~~~-~~G--g~~~~~~----~--~g~-----------~~~~~~~v~~~~p~- 58 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEMDF-RPG--GSFRFMD----P--DGG-----------EFGFDGTVLEVEPP- 58 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEEEC-STT--EEEEEEE----T--TSE-----------EEEEEEEEEEEETT-
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCcceeee-ecC--CEEEEEe----c--CCC-----------CceeeEEEEEEeCC-
Confidence 6899999999999999999922 12222211 112 4666622 1 332 11233358999985
Q ss_pred cEEEEEEEecccc-eeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHH-HHHHHHHHHHHHHHHh
Q 041543 99 RCLIYEMVDGNIG-FKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQK-YDLGLQRMAKTMEDAI 176 (179)
Q Consensus 99 r~~~Y~~~~~~~~-~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~-~~~gl~~m~~~le~~l 176 (179)
++|.|+....+.+ -.....+++|.+.+ ++|+++-+..--+. ...... +..|...+..+|++.|
T Consensus 59 ~~i~~~~~~~~~~~~~~~~v~~~~~~~~----------~~T~l~~~~~~~~~-----~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 59 ERIVFTWRMPDDPDGPESRVTFEFEEEG----------GGTRLTLTHSGFPD-----DDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp TEEEEEEEEETSSSCEEEEEEEEEEEET----------TEEEEEEEEEEEHS-----HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEccCCCCCCceEEEEEEEEcC----------CcEEEEEEEEcCCc-----cHHHHHHHHHHHHHHHHHHHHHh
Confidence 5699986654332 44678899999944 58999887643332 122222 5556666666666555
No 40
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.08 E-value=6.7e-05 Score=61.27 Aligned_cols=130 Identities=17% Similarity=0.298 Sum_probs=87.4
Q ss_pred eEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543 10 EGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE 89 (179)
Q Consensus 10 ~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E 89 (179)
+-++.++| ++|++.||.+.+||.++|.|+-.+++.+.... +. -|...-. | .|. .++|--
T Consensus 71 ~v~~~V~I-~kPae~vy~~W~dLe~lP~~Mkhl~SVkVldd-kr----SrW~~~a--p--~g~----------~v~Wea- 129 (217)
T COG5637 71 EVEVQVTI-DKPAEQVYAYWRDLENLPLWMKHLDSVKVLDD-KR----SRWKANA--P--LGL----------EVEWEA- 129 (217)
T ss_pred EEEEEEEe-CChHHHHHHHHHhhhhhhHHHHhhceeeccCC-Cc----cceeEcC--C--CCc----------eEEEee-
Confidence 45789999 99999999999999999999999988776433 22 4444331 2 232 233433
Q ss_pred EEEEEecCCcEEEEEEEec-ccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHH--------HH
Q 041543 90 RLVTVDHVQRCLIYEMVDG-NIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLL--------QK 160 (179)
Q Consensus 90 ~L~~~D~~~r~~~Y~~~~~-~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~--------~~ 160 (179)
+|+. |..+..+.|+-++| .++ ..+.+++.+..+ ..|.|.-++.|.|+.+....... .-
T Consensus 130 ~it~-d~~~e~I~W~Sl~Ga~v~---NsG~VrF~~~pg---------~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqq 196 (217)
T COG5637 130 EITK-DIPGERIQWESLPGARVE---NSGAVRFYDAPG---------DSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQ 196 (217)
T ss_pred hhhc-cCCCcEEeeecCCCCcCC---CCccEEeeeCCC---------CceEEEEEEEecCCccHHHHHHHHHhccchHHH
Confidence 3444 45577899998875 233 467788889887 57999999999997554332222 23
Q ss_pred HHHHHHHHHHHHH
Q 041543 161 YDLGLQRMAKTME 173 (179)
Q Consensus 161 ~~~gl~~m~~~le 173 (179)
+++=|++.+..+|
T Consensus 197 I~~DL~RFk~~~e 209 (217)
T COG5637 197 IQDDLERFKEYQE 209 (217)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555444
No 41
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.87 E-value=0.00025 Score=54.13 Aligned_cols=90 Identities=7% Similarity=0.054 Sum_probs=56.9
Q ss_pred CCChhhHhHHhhCCCCccccccceeEEEeecCCCCCC-cEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEEEecC
Q 041543 19 RATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEP-DCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHV 97 (179)
Q Consensus 19 ~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~-G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~~D~~ 97 (179)
+||+++||++++|...+.+|.-. ..|+. + ..+ |..|.+.. .+.=+.+++|+.
T Consensus 2 ~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~-d---~~~GG~f~~~~~----------------------~~~G~~~ev~pp 54 (132)
T PTZ00220 2 YVPPEVLYNAFLDAYTLTRLSLG-SPAEM-D---AKVGGKFSLFNG----------------------SVEGEFTELEKP 54 (132)
T ss_pred CCCHHHHHHHHcCHHHHHHHhcC-CCccc-c---CCcCCEEEEecC----------------------ceEEEEEEEcCC
Confidence 79999999999999999888411 12332 1 122 35565432 123367788885
Q ss_pred CcEEEEEEEeccc-ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEE
Q 041543 98 QRCLIYEMVDGNI-GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFT 145 (179)
Q Consensus 98 ~r~~~Y~~~~~~~-~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~ 145 (179)
++|.|+-...+. +-..-..|+++.+.++ ++|+++-+..
T Consensus 55 -~rlv~tw~~~~~~~~~~s~vt~~~~~~~~---------g~T~lt~~~~ 93 (132)
T PTZ00220 55 -KKIVQKWRFRDWEEDVYSKVTIEFRAVEE---------DHTELKLTQT 93 (132)
T ss_pred -CEEEEEEecCCCCCCCceEEEEEEEeCCC---------CcEEEEEEEe
Confidence 557776543321 1112468899999764 5899988866
No 42
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.82 E-value=0.0023 Score=52.94 Aligned_cols=123 Identities=11% Similarity=-0.001 Sum_probs=76.4
Q ss_pred EEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccC--CCCCCCCCCCCCCCCCceeEEE
Q 041543 13 VSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPS--RAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 13 vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~--~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
...+| ++|+++||++|.|....++|.+.+.+++.++.-+....-+++..-.+.|. .++. .+.-+
T Consensus 49 ge~~v-~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RD-------------fV~l~ 114 (205)
T cd08874 49 GAGVI-KAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRD-------------FCCLQ 114 (205)
T ss_pred EEEEE-cCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCe-------------EEEEE
Confidence 45688 99999999999999999999999999988764333344456554332221 2221 33323
Q ss_pred EEEEecCCcEEEEEEEec-c--------cceeeEEEEEEEEeC---CCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHH
Q 041543 91 LVTVDHVQRCLIYEMVDG-N--------IGFKSYVSTIKIIPG---DDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLL 158 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~-~--------~~~~~y~at~~v~p~---~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~ 158 (179)
-...+.....+.-+-+.. . ++...+.+-..++|. +. +.|+|++....+|-.|..+..+.
T Consensus 115 ~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~---------~~t~vty~~q~DPggg~iP~~l~ 185 (205)
T cd08874 115 VEAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGN---------QYTRVIYIAQVALCGPDVPAQLL 185 (205)
T ss_pred EEEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCC---------CcEEEEEEEEECCCCCCCCHHHH
Confidence 222233222222222222 1 223466777888887 43 68999999999997444544433
No 43
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00075 Score=52.67 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=75.2
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEE-EeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIR-YCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
+++.+| ++|+++||++++|-..+.+|+. -..|+. +...| |.-| .... + +|. .....-+
T Consensus 11 ~~er~i-~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~-d~r~g--g~~~~~~~~---~--~g~-----------~~~~~~~ 69 (149)
T COG3832 11 EIERLI-DAPPEKVFEALTDPELLARWFM-PGGAEF-DARTG--GGERVRFRG---P--DGP-----------VHSFEGE 69 (149)
T ss_pred EEEEee-cCCHHHHHHHhcCHHHHHhhcC-CCCCcc-ceecC--CceEEeeec---C--CCC-----------eeecceE
Confidence 578889 9999999999999999999987 322222 11111 1222 2222 1 332 1245667
Q ss_pred EEEEecCCcEEEEEEEec--ccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHH-HHHHHHHHH
Q 041543 91 LVTVDHVQRCLIYEMVDG--NIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLL-QKYDLGLQR 167 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~--~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~-~~~~~gl~~ 167 (179)
+.++++. ++|.|+-... ..++..-..++++++..++ +++++.-.....-.+ ..+... .-+..|...
T Consensus 70 ~~~v~p~-~rIv~tw~~~~~~~~~~~~~v~~~l~~~~~g--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~Gw~~ 138 (149)
T COG3832 70 YLEVVPP-ERIVFTWDFDEDGEPFLKSLVTITLTPEDDG--------GTTTLVRTSGGGFLE--DEDQKLGMGMEEGWGQ 138 (149)
T ss_pred EEEEcCC-cEEEEEeccCCCCCcccCceEEEEEEEecCC--------CcEEEEEEeeccccc--hhHHHhCcchhhhHHH
Confidence 8888885 5577766553 3333456788999997752 222322222211010 111111 124777777
Q ss_pred HHHHHHHHhh
Q 041543 168 MAKTMEDAIV 177 (179)
Q Consensus 168 m~~~le~~l~ 177 (179)
|...|++.|.
T Consensus 139 ~~~~l~~~l~ 148 (149)
T COG3832 139 LLDNLKALLE 148 (149)
T ss_pred HHHHHHHhhc
Confidence 7777776654
No 44
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.63 E-value=0.0044 Score=50.94 Aligned_cols=124 Identities=10% Similarity=0.071 Sum_probs=72.3
Q ss_pred EEEEEecCCChhhHh-HHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 12 KVSTRVSRATADQIW-PLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW-~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
++..+| ++|+++++ .++-|..+.++|.+.+.+++.++--+...-.++..... .| .+. -+.-..+.-+
T Consensus 52 k~e~~i-~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p-~p--~~~--------vs~RD~V~~~ 119 (209)
T cd08905 52 RLEVVV-DQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAE-TA--GNV--------VGPRDFVSVR 119 (209)
T ss_pred EEEEEe-cCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEecc-CC--CCc--------cCccceEEEE
Confidence 467788 99999999 77789999999999998887764322222224443321 11 110 0001133333
Q ss_pred EEEEecCCcEEEEEEEecc--------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHH
Q 041543 91 LVTVDHVQRCLIYEMVDGN--------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLA 155 (179)
Q Consensus 91 L~~~D~~~r~~~Y~~~~~~--------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~ 155 (179)
....+.....+.......+ ++...+.+-+.++|.++++ ++|.|+|.+-.||- |..+.
T Consensus 120 ~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~-------~~t~v~~~~~~Dpk-G~iP~ 184 (209)
T cd08905 120 CAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDP-------SKTKLTWLLSIDLK-GWLPK 184 (209)
T ss_pred EEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCC-------CceEEEEEEeecCC-CCCCH
Confidence 3333333322221112221 2345777888899986432 68999999999995 44443
No 45
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.62 E-value=0.01 Score=48.52 Aligned_cols=146 Identities=15% Similarity=0.152 Sum_probs=88.8
Q ss_pred ceeEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCC-CCcEEEEeecccccCCCCCCCCCCCCCCCCCce
Q 041543 8 KWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNG-EPDCIRYCAGFSIPSRAASSSTDDNPPPAACSW 86 (179)
Q Consensus 8 ~w~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g-~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~ 86 (179)
..+=++..+++++|++.+.+++.|-....+|.+.+..++.++-+.. ....+++..-.+.|-.++. .
T Consensus 49 ~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD-------------~ 115 (209)
T cd08870 49 LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDRE-------------Y 115 (209)
T ss_pred ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCce-------------E
Confidence 3456788888677999999999999999999999888877654322 2234555444333333432 3
Q ss_pred eEEEEEEEe-cCCcEEEEEEEec-------ccceeeEEEEEEEEeC--CCCCCCCCCCCCceEEEEEEEEcCCCCCcHH-
Q 041543 87 SKERLVTVD-HVQRCLIYEMVDG-------NIGFKSYVSTIKIIPG--DDNNHDGQNQSAGCVIEWSFTVDPVEGLVLA- 155 (179)
Q Consensus 87 ~~E~L~~~D-~~~r~~~Y~~~~~-------~~~~~~y~at~~v~p~--~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~- 155 (179)
+.-|-...| +....+....+.. -..+..|.+.+.++|. ++ ++|.+++++-.+|- |..+.
T Consensus 116 V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~---------~~t~~~~~~~~dp~-G~IP~w 185 (209)
T cd08870 116 VIARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDG---------QGSACEVTYFHNPD-GGIPRE 185 (209)
T ss_pred EEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCC---------CceEEEEEEEECCC-CCCCHH
Confidence 333333333 3333333322322 2346789999999998 43 68999999998984 43333
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 041543 156 DLLQKYDLGLQRMAKTMEDAI 176 (179)
Q Consensus 156 ~~~~~~~~gl~~m~~~le~~l 176 (179)
-...+...++-..-+.|.+++
T Consensus 186 lvN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 186 LAKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 223444444444444555444
No 46
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.59 E-value=0.01 Score=48.87 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=79.3
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+++.+|+++|++.+++++.|.....+|.+.+..|+.++.-+..--.++.....+.|-.++. .+.-+.
T Consensus 50 k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RD-------------fV~~r~ 116 (222)
T cd08871 50 KVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRD-------------FVNLRS 116 (222)
T ss_pred EEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCe-------------EEEEEE
Confidence 4556665899999999999988899999999888776543222122333322222212221 333333
Q ss_pred EEEecCCcEEEEEEEecc--------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHH-----
Q 041543 92 VTVDHVQRCLIYEMVDGN--------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLL----- 158 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~~~--------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~----- 158 (179)
...++....+...-+..+ +....+.+-+.++|.++ ++|.|+|....+|. |..+.-+.
T Consensus 117 ~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~---------~~t~vt~~~~~Dp~-G~IP~~lvN~~~~ 186 (222)
T cd08871 117 WLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP---------KGCTLTYVTQNDPK-GSLPKWVVNKATT 186 (222)
T ss_pred EEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC---------CCEEEEEEEecCCC-CCcCHHHHHHHHH
Confidence 333332222222212211 12345677788999875 68999999999995 44443332
Q ss_pred HHHHHHHHHHHHHHHH
Q 041543 159 QKYDLGLQRMAKTMED 174 (179)
Q Consensus 159 ~~~~~gl~~m~~~le~ 174 (179)
...-..|++|.+.+++
T Consensus 187 ~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 187 KLAPKVMKKLHKAALK 202 (222)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 2233445555555544
No 47
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.54 E-value=0.00093 Score=52.68 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=85.8
Q ss_pred EEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEE
Q 041543 13 VSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLV 92 (179)
Q Consensus 13 vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~ 92 (179)
.++.| ..+|+++++++.|-..+|+++|.+..+...+..+...-+-=.+.+ .|. ..+..-|.+
T Consensus 6 ~s~lv-~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~------k~i-----------~e~F~Trv~ 67 (146)
T COG2867 6 RTALV-PYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGF------KGI-----------RETFTTRVT 67 (146)
T ss_pred eeeec-cCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEh------hhe-----------eeeeeeeee
Confidence 46677 999999999999999999999999877766554333221111121 121 112222333
Q ss_pred EEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041543 93 TVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTM 172 (179)
Q Consensus 93 ~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m~~~l 172 (179)
.++..+.+.=.+++ -||+...++.+++|.++ ++|.|+...+|+..+..-...+..++......|.+.+
T Consensus 68 -~~~~~~~I~~~l~~--GPFk~L~~~W~F~pl~~---------~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF 135 (146)
T COG2867 68 -LKPTARSIDMKLID--GPFKYLKGGWQFTPLSE---------DACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAF 135 (146)
T ss_pred -ecCchhhhhhhhhc--CChhhhcCceEEEECCC---------CceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334433333333 46667889999999876 6999999988887644444455567777777777766
Q ss_pred HHH
Q 041543 173 EDA 175 (179)
Q Consensus 173 e~~ 175 (179)
++-
T Consensus 136 ~kR 138 (146)
T COG2867 136 EKR 138 (146)
T ss_pred HHH
Confidence 653
No 48
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.52 E-value=0.0033 Score=53.22 Aligned_cols=114 Identities=9% Similarity=0.005 Sum_probs=72.1
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
++..++ ++|+++++++|.|.....+|.+.+.+|+.+..-+...+-++...-.+.|-.+.. .+.-+-
T Consensus 80 k~e~~v-d~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RD-------------fV~~~s 145 (235)
T cd08873 80 CVELKV-QTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPND-------------FVLLVS 145 (235)
T ss_pred EEEEEe-cCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCce-------------EEEEEE
Confidence 566778 999999999999999999999999999887633223343443322111211221 333222
Q ss_pred EEE--ecCC-cEEEEEEEecc--------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcC
Q 041543 92 VTV--DHVQ-RCLIYEMVDGN--------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDP 148 (179)
Q Consensus 92 ~~~--D~~~-r~~~Y~~~~~~--------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p 148 (179)
... +... -.+..+-+..+ +....+.+-+.+.|.++ ++|.|++....+|
T Consensus 146 ~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~---------~~t~VtY~~~~dP 204 (235)
T cd08873 146 RRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCG---------TCTEVSYYNETNP 204 (235)
T ss_pred EEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCC---------CcEEEEEEEEcCC
Confidence 222 2211 22233333311 23567888999999986 6899999999998
No 49
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=97.47 E-value=0.025 Score=43.91 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=79.5
Q ss_pred eeEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecc-cccCCCCCCCCCCCCCCCCCcee
Q 041543 9 WEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGF-SIPSRAASSSTDDNPPPAACSWS 87 (179)
Q Consensus 9 w~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~-~~p~~~g~~~~~~~~~~~~~~~~ 87 (179)
..-+.+.+| ++|+++||.++.|.....+|.+.+..++.+.--+... .+.+..+. +.|-.++. .+
T Consensus 39 ~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~-~i~~~~~~~p~p~~~Rd-------------fv 103 (193)
T cd00177 39 KLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHT-DIIYYKTKPPWPVSPRD-------------FV 103 (193)
T ss_pred eeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCe-EEEEEEeeCCCccCCcc-------------EE
Confidence 455678889 8899999999999999999999999888765432222 33333332 11111111 22
Q ss_pred EEEEEEEec-CCcEEEEEEEecc-c----c---eeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHH-H
Q 041543 88 KERLVTVDH-VQRCLIYEMVDGN-I----G---FKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLAD-L 157 (179)
Q Consensus 88 ~E~L~~~D~-~~r~~~Y~~~~~~-~----~---~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~-~ 157 (179)
--+-...++ ....+...-++.+ . + ...+.+-+.++|.++ ++|.+++...++|. |..+.- +
T Consensus 104 ~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~---------~~~~vt~~~~~D~~-g~iP~~~~ 173 (193)
T cd00177 104 YLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP---------GKTKVTYVLQVDPK-GSIPKSLV 173 (193)
T ss_pred EEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC---------CCEEEEEEEeeCCC-CCccHHHH
Confidence 222222233 2222222222221 1 1 223356677888855 79999999999996 444333 3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041543 158 LQKYDLGLQRMAKTMED 174 (179)
Q Consensus 158 ~~~~~~gl~~m~~~le~ 174 (179)
...+......+.+.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 174 NSAAKKQLASFLKDLRK 190 (193)
T ss_pred HhhhhhccHHHHHHHHH
Confidence 34455555555555443
No 50
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=97.43 E-value=0.014 Score=47.47 Aligned_cols=121 Identities=10% Similarity=0.059 Sum_probs=71.4
Q ss_pred EEEEEecCCChhhHhH-HhhCCCCccccccceeEEEeecCCCCCCcEEEEeeccc--ccCCCCCCCCCCCCCCCCCceeE
Q 041543 12 KVSTRVSRATADQIWP-LFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFS--IPSRAASSSTDDNPPPAACSWSK 88 (179)
Q Consensus 12 ~vs~~i~~apae~VW~-~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~--~p~~~g~~~~~~~~~~~~~~~~~ 88 (179)
+++.+| ++|+++|.. ++.|....++|.+.+..++.++.-++..--++.+.... .|-.++. .+.
T Consensus 51 k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RD-------------fV~ 116 (208)
T cd08868 51 RLTGVL-DCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRD-------------FVS 116 (208)
T ss_pred EEEEEE-cCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccc-------------eEE
Confidence 567788 999999986 56799999999999988877654332222233333210 1111111 333
Q ss_pred EEEEEEecCCcEEEEEEEecc--------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcH
Q 041543 89 ERLVTVDHVQRCLIYEMVDGN--------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVL 154 (179)
Q Consensus 89 E~L~~~D~~~r~~~Y~~~~~~--------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~ 154 (179)
=|-...++....+...-+..+ ++...+.+.+.++|.++++ ++|.|+|.+..+|- |+.+
T Consensus 117 ~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~-------~~t~v~~~~~~Dp~-G~iP 182 (208)
T cd08868 117 LRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNP-------NKCNFTWLLNTDLK-GWLP 182 (208)
T ss_pred EEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCC-------CceEEEEEEEECCC-CCCc
Confidence 333334443333333333311 1234666788899986432 68999999999995 4443
No 51
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.43 E-value=0.025 Score=46.66 Aligned_cols=38 Identities=3% Similarity=0.079 Sum_probs=33.4
Q ss_pred EEEEEecCCChhhHh-HHhhCCCCccccccceeEEEeecC
Q 041543 12 KVSTRVSRATADQIW-PLFTDFFNIHKYFHSLATSYGVHG 50 (179)
Q Consensus 12 ~vs~~i~~apae~VW-~~l~df~~l~~w~p~i~~~~~~~G 50 (179)
++.++| ++|+++++ .++.|....++|.+.+.+|+.+.-
T Consensus 52 k~~~~v-~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~ 90 (209)
T cd08906 52 ILKAFM-QCPAELVYQEVILQPEKMVLWNKTVSACQVLQR 90 (209)
T ss_pred EEEEEE-cCCHHHHHHHHHhChhhccccCccchhhhheee
Confidence 677888 99999998 688999999999999999987643
No 52
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.28 E-value=0.027 Score=47.77 Aligned_cols=137 Identities=8% Similarity=0.027 Sum_probs=78.6
Q ss_pred EEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccc-cCCCCCCCCCCCCCCCCCceeEE
Q 041543 11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSI-PSRAASSSTDDNPPPAACSWSKE 89 (179)
Q Consensus 11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~-p~~~g~~~~~~~~~~~~~~~~~E 89 (179)
=+++.++ ++|++++.++|.|..+.++|.+.+.+|+.+..-+..-- +.++...+. |-.+.. .+.-
T Consensus 80 fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD-------------~V~~ 144 (236)
T cd08914 80 VWVEKHV-KRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKD-------------LVVL 144 (236)
T ss_pred EEEEEEE-cCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-EEEEecCCCCCCCCce-------------EEEE
Confidence 3567788 99999999999999999999999999988753221112 555554221 222221 2221
Q ss_pred EEEE-EecCCcEEEEEEEe--c-cc-------ceee-EEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcH---
Q 041543 90 RLVT-VDHVQRCLIYEMVD--G-NI-------GFKS-YVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVL--- 154 (179)
Q Consensus 90 ~L~~-~D~~~r~~~Y~~~~--~-~~-------~~~~-y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~--- 154 (179)
+-.. ..+.+..+...+.. . .+ ++.. ..+. .++|.++ ++|.|++....+| |..+
T Consensus 145 ~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~---------~~~~VtY~~~~dP--g~lp~~~ 212 (236)
T cd08914 145 VSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDS---------NSCTVSYFNQISA--SILPYFA 212 (236)
T ss_pred EEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCC---------CcEEEEEEEEcCC--ccchheE
Confidence 1111 12122223222222 2 22 2334 3333 7889876 6999999999999 4332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH
Q 041543 155 ---ADLLQKYDLGLQRMAKTMED 174 (179)
Q Consensus 155 ---~~~~~~~~~gl~~m~~~le~ 174 (179)
.++-.-+...+..|.+-||.
T Consensus 213 ~n~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd08914 213 GNLGGWSKSIEETAASCIQFLEN 235 (236)
T ss_pred EecchhhhHHHHHHHHHHHHHhc
Confidence 23333444555566555553
No 53
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=97.18 E-value=0.043 Score=44.62 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=69.1
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+++.+| ++++++|+..+-|. -++|.+.+.+|+.++--+..---+++....+.|-.+. ..+.-|.
T Consensus 47 K~~~~v-~a~~~~v~~~l~d~--r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~R-------------DfV~~r~ 110 (197)
T cd08869 47 RASTEV-EAPPEEVLQRILRE--RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTR-------------DYVVLRT 110 (197)
T ss_pred EEEEEe-CCCHHHHHHHHHHH--HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCc-------------eEEEEEE
Confidence 678888 99999999988765 3899999999988754322222345544322221122 1444434
Q ss_pred EEEecCC--cEEEEEEEec--cc-----ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 92 VTVDHVQ--RCLIYEMVDG--NI-----GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 92 ~~~D~~~--r~~~Y~~~~~--~~-----~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
...+..+ ..+.+.-+.. .. ....+.+-+.++|.++ ++|+|+|....||.
T Consensus 111 ~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~---------~~t~vty~~~~Dp~ 168 (197)
T cd08869 111 WRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGS---------GKSRVTHICRVDLR 168 (197)
T ss_pred EEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCC---------CCeEEEEEEEECCC
Confidence 3333322 2233333321 22 2345667788899875 68999999999995
No 54
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.16 E-value=0.051 Score=44.51 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=84.6
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCC-CCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNG-EPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g-~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~ 90 (179)
+++.++.++|++.+.+++.|-....+|.+.+.+++.++.... .--.+....-.+.|-.++. .+.-|
T Consensus 48 k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD-------------~V~~r 114 (207)
T cd08911 48 KVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRD-------------YVYVR 114 (207)
T ss_pred EEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCcc-------------EEEEE
Confidence 454555599999999999999999999999988887764211 1122333222222223332 55555
Q ss_pred EEEEecCCcEE---EEEEEe-------cccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHH-HH
Q 041543 91 LVTVDHVQRCL---IYEMVD-------GNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADL-LQ 159 (179)
Q Consensus 91 L~~~D~~~r~~---~Y~~~~-------~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~-~~ 159 (179)
-...|+.+..+ .+.+.. +-+.+..|.+.+.++|.+..+ .++|.+++.+-.+|- |..+.-+ ..
T Consensus 115 ~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~------~~~~~~~~~~~~dPg-G~IP~~lvN~ 187 (207)
T cd08911 115 RYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFD------EPGFEFVLTYFDNPG-VNIPSYITSW 187 (207)
T ss_pred EEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCC------CCCeEEEEEEEeCCC-CccCHHHHHH
Confidence 55666554332 222221 113467899999999985210 058999998777885 4444322 23
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041543 160 KYDLGLQRMAKTMEDAI 176 (179)
Q Consensus 160 ~~~~gl~~m~~~le~~l 176 (179)
+...++-.+-+.|.+|+
T Consensus 188 ~~~~~~~~~l~~l~~a~ 204 (207)
T cd08911 188 VAMSGMPDFLERLRNAA 204 (207)
T ss_pred HHHhhccHHHHHHHHHH
Confidence 44444444444444444
No 55
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=97.09 E-value=0.084 Score=42.88 Aligned_cols=143 Identities=11% Similarity=-0.014 Sum_probs=78.3
Q ss_pred EEEEEecCCChhhHhHHhhC--CCCccccccceeEEEeecCCCCCCcEEEEeecccccCC-CC-CCCCCCCCCCCCCcee
Q 041543 12 KVSTRVSRATADQIWPLFTD--FFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSR-AA-SSSTDDNPPPAACSWS 87 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~d--f~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~-~g-~~~~~~~~~~~~~~~~ 87 (179)
+++.+| ++++++|..++-| .....+|.+.+..|+.++.-+..---+++ .. |.. .+ . +.-..+
T Consensus 49 k~~~~i-~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~-~~---p~~~~~~v---------s~RDfV 114 (206)
T cd08867 49 RAEGIV-DALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRT-IT---PSAAMGLI---------SPRDFV 114 (206)
T ss_pred EEEEEE-cCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEE-Ec---cccccCcc---------CCcceE
Confidence 677888 8999999999998 77789999999999887643221112333 22 100 00 0 000122
Q ss_pred -EEEEEEEecCCcEEEEEEEecc--------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHH
Q 041543 88 -KERLVTVDHVQRCLIYEMVDGN--------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLL 158 (179)
Q Consensus 88 -~E~L~~~D~~~r~~~Y~~~~~~--------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~ 158 (179)
.+....+++....+....++.+ ++...+.+-+-+.|..+++ ++|.++|.+.++|. |..+.-+.
T Consensus 115 ~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~-------~~t~~~~~~~~Dpk-G~iP~~lv 186 (206)
T cd08867 115 DLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSP-------DKSFLVLYVQTDLR-GMIPQSLV 186 (206)
T ss_pred EEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCC-------CceEEEEEEEeccC-CCCcHHHH
Confidence 2222333332222333333222 1123344555677765322 68999999999996 44444333
Q ss_pred -HHHHHHHHHHHHHHHHHh
Q 041543 159 -QKYDLGLQRMAKTMEDAI 176 (179)
Q Consensus 159 -~~~~~gl~~m~~~le~~l 176 (179)
..+..++....+.|.+|+
T Consensus 187 n~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 187 ESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred HhhhhhhHHHHHHHHHHhc
Confidence 455555555555555554
No 56
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.01 E-value=0.069 Score=45.27 Aligned_cols=113 Identities=13% Similarity=0.051 Sum_probs=69.7
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccc--cCCCCCCCCCCCCCCCCCceeEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSI--PSRAASSSTDDNPPPAACSWSKE 89 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~--p~~~g~~~~~~~~~~~~~~~~~E 89 (179)
++..+| ++|+++++++|.|....++|.+.+.+|+.++.-+..- .+..+...+. |-.+.. .+.-
T Consensus 84 K~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RD-------------fV~~ 148 (240)
T cd08913 84 KVEMVV-HVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQD-------------FVIL 148 (240)
T ss_pred EEEEEE-cCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-EEEEEecCCCCCCCCCCe-------------EEEE
Confidence 556788 9999999999999999999999999998875432222 3544443211 111121 2222
Q ss_pred EEEEEec-CCc--EEEEEEEecc-c-------ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcC
Q 041543 90 RLVTVDH-VQR--CLIYEMVDGN-I-------GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDP 148 (179)
Q Consensus 90 ~L~~~D~-~~r--~~~Y~~~~~~-~-------~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p 148 (179)
+-...+. ... .+...++..+ + ...++.+-+.+.|.++ +.|.+++....+|
T Consensus 149 ~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~---------~~t~vtY~~~~dP 209 (240)
T cd08913 149 ASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESD---------QLTKVSYYNQATP 209 (240)
T ss_pred EEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCC---------CcEEEEEEEEeCC
Confidence 2221221 121 1333344322 2 2456778888999876 6899999877777
No 57
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=96.90 E-value=0.13 Score=42.22 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=35.8
Q ss_pred EEEEEecCCChhhHhHHhhCCCCc--cccccceeEEEeecCCCCCCcEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNI--HKYFHSLATSYGVHGTNGEPDCIRY 60 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l--~~w~p~i~~~~~~~G~~g~~G~vR~ 60 (179)
++..+| ++++++++++|-|-.+. .+|.+.+.+++.++--+....-+|.
T Consensus 49 k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~ 98 (208)
T cd08903 49 KGEGIV-YATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT 98 (208)
T ss_pred EEEEEe-cCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE
Confidence 577888 99999999999877664 7999999998887543333333444
No 58
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.83 E-value=0.067 Score=43.76 Aligned_cols=142 Identities=12% Similarity=0.060 Sum_probs=79.9
Q ss_pred EEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeec-ccccCCCCCCCCCCCCCCCCCceeE-
Q 041543 11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAG-FSIPSRAASSSTDDNPPPAACSWSK- 88 (179)
Q Consensus 11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~-~~~p~~~g~~~~~~~~~~~~~~~~~- 88 (179)
=++..+| ++|++.+..++.|-...++|.|.+..++.+...+. .-.+=+... .+.|-.++. .+.
T Consensus 48 ~k~e~~i-~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~-~~~v~y~~~~~PwPv~~RD-------------~v~~ 112 (215)
T cd08877 48 LRMEGEI-DGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGR-ADKVCYLRVDLPWPLSNRE-------------AVFR 112 (215)
T ss_pred EEEEEEe-cCChhHeEEEEehhhhHhhhcccceeeEEEeecCC-ceEEEEEEEeCceEecceE-------------EEEE
Confidence 3678889 99999999999999999999999887766543211 112222222 112211111 111
Q ss_pred -EEEEEEecCCcEEEEEEEe--------------------cccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEc
Q 041543 89 -ERLVTVDHVQRCLIYEMVD--------------------GNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVD 147 (179)
Q Consensus 89 -E~L~~~D~~~r~~~Y~~~~--------------------~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~ 147 (179)
-.+..++. +..+...+.. +......+.+-+.++|.++ ++|.+++.+..+
T Consensus 113 ~~~~~~~~~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~---------~~t~v~~~~~~D 182 (215)
T cd08877 113 GFGVDRLEE-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISP---------TKCYLRFVANVD 182 (215)
T ss_pred EEEEeeecc-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCC---------CCeEEEEEEEcC
Confidence 11111222 2333222221 1122356778888999986 689999999999
Q ss_pred CCCCCcHHHHH-HHHHHHHHHHHHHHHHHhh
Q 041543 148 PVEGLVLADLL-QKYDLGLQRMAKTMEDAIV 177 (179)
Q Consensus 148 p~~g~~~~~~~-~~~~~gl~~m~~~le~~l~ 177 (179)
|.....+.-+. .+.+.....|-+.|.+.+.
T Consensus 183 P~g~~IP~~liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 183 PKMSLVPKSLLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 96442444333 3344444455555555443
No 59
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.12 Score=40.53 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=75.9
Q ss_pred EEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeec----ccccCCCCCCCCCCCCCCCCCceeEE
Q 041543 14 STRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAG----FSIPSRAASSSTDDNPPPAACSWSKE 89 (179)
Q Consensus 14 s~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~----~~~p~~~g~~~~~~~~~~~~~~~~~E 89 (179)
..+| +||.|.||+.-+.-+++..--|--. ..+-.|. +++..-++.+ +++| .|. .-+-
T Consensus 7 ~~~i-~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~--eitqgtri~m~l~pfglp--~~~-------------tW~A 67 (153)
T COG4276 7 RTTI-TAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS--EITQGTRIAMGLTPFGLP--AGL-------------TWVA 67 (153)
T ss_pred eeEe-cCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC--cccceeeeeecceeecCC--CCc-------------eEEE
Confidence 3568 9999999999998888877666433 2222332 3333322322 2444 443 4566
Q ss_pred EEEE--EecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCC
Q 041543 90 RLVT--VDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEG 151 (179)
Q Consensus 90 ~L~~--~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g 151 (179)
|+++ +|+. ++|+=.++.++++..+...+.++.+.+ ++|++.=+..|+++-+
T Consensus 68 rhte~~~d~~-~~FtDv~i~gPfp~~~WrHtH~F~~eg----------g~TvliD~Vsye~p~g 120 (153)
T COG4276 68 RHTESGFDNG-SRFTDVCITGPFPALNWRHTHNFVDEG----------GGTVLIDSVSYELPAG 120 (153)
T ss_pred EeeecccCCc-ceeeeeeecCCccceeeEEEeeeecCC----------CcEEEEeeEEeeccCc
Confidence 7777 8774 668888888888878899999999998 4899999999997644
No 60
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=96.63 E-value=0.25 Score=39.41 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=69.6
Q ss_pred eeEEEEEEecCCChhh-HhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeec-ccc-cCCCCCCCCCCCCCCCCCc
Q 041543 9 WEGKVSTRVSRATADQ-IWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAG-FSI-PSRAASSSTDDNPPPAACS 85 (179)
Q Consensus 9 w~g~vs~~i~~apae~-VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~-~~~-p~~~g~~~~~~~~~~~~~~ 85 (179)
-.=+++.+| .+++++ +=.++.|....++|.+.+..++.++--+.. ..+.+... ... |-.++.
T Consensus 45 ~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RD------------- 109 (206)
T smart00234 45 EASRAVGVV-PMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRD------------- 109 (206)
T ss_pred EEEEEEEEE-ecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC-CeEEEEEEecccCcCCCCe-------------
Confidence 445778888 777776 556778999999999999888776432222 23333322 111 211221
Q ss_pred eeEEEEEEE-ecCCcEEEEEEEecc--------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 86 WSKERLVTV-DHVQRCLIYEMVDGN--------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 86 ~~~E~L~~~-D~~~r~~~Y~~~~~~--------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
.+.-|-... ++....+..+.+..+ +....+.+-+.++|.++ +.|.|+|....+|.
T Consensus 110 fv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~---------~~t~vt~~~~~D~~ 173 (206)
T smart00234 110 FVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN---------GPSKVTWVSHADLK 173 (206)
T ss_pred EEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC---------CCeEEEEEEEEecC
Confidence 332222223 233333443223221 23356788889999886 57999999999985
No 61
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=96.62 E-value=0.26 Score=40.82 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=70.7
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+++++| ++++++|...+-|- .++|.+.+..+..++.-+..---+++....+.|-.++. .+.-|.
T Consensus 55 r~~~~i-~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD-------------~V~~Rs 118 (204)
T cd08908 55 RTTIEV-PAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARD-------------YVVLRT 118 (204)
T ss_pred EEEEEe-CCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCcE-------------EEEEEE
Confidence 566777 88999999999766 78999988888776432222223444433222322332 444434
Q ss_pred EEEecCCcEEEEEEEe---ccc-----ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHH
Q 041543 92 VTVDHVQRCLIYEMVD---GNI-----GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLA 155 (179)
Q Consensus 92 ~~~D~~~r~~~Y~~~~---~~~-----~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~ 155 (179)
...+..+-.+.-.+.. ..+ ....+.+...++|.+. ++|.|++...++|. |..+.
T Consensus 119 ~~~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~---------g~t~vtyi~~~DPg-G~iP~ 180 (204)
T cd08908 119 WRTNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGS---------GKSKLTYMCRIDLR-GHMPE 180 (204)
T ss_pred EEEeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCC---------CcEEEEEEEEeCCC-CCCcH
Confidence 3333333333222221 112 3345677788899876 79999999999995 55554
No 62
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=96.52 E-value=0.13 Score=42.26 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=81.8
Q ss_pred eEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCcee-E
Q 041543 10 EGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWS-K 88 (179)
Q Consensus 10 ~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~ 88 (179)
+=++..++++++++.+.+++-|.....+|.+.+.+...... ++. --++...-.+.|-.++. .+ .
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~-~~~-~i~y~~~k~PwPvs~RD-------------~V~~ 114 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKEC-DGE-TVIYWEVKYPFPLSNRD-------------YVYI 114 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecC-CCC-EEEEEEEEcCCCCCCce-------------EEEE
Confidence 34678888458999999999999999999998765432222 221 12333222222322332 22 1
Q ss_pred EEEEEEecCCcEEEE---EEEec--------ccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHH
Q 041543 89 ERLVTVDHVQRCLIY---EMVDG--------NIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADL 157 (179)
Q Consensus 89 E~L~~~D~~~r~~~Y---~~~~~--------~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~ 157 (179)
-+...+|...+.+.. ..+.. -+++..|.+.+.++|.+. ++|.+++.+-.+|- |..+.-+
T Consensus 115 r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~---------~~t~i~~~~~~DPg-G~IP~wl 184 (207)
T cd08910 115 RQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK---------KGSKVFMYYFDNPG-GMIPSWL 184 (207)
T ss_pred EEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC---------CceEEEEEEEeCCC-CcchHHH
Confidence 122334433332111 12221 134678999999998875 68999999999994 5454433
Q ss_pred H-HHHHHHHHHHHHHHHHHh
Q 041543 158 L-QKYDLGLQRMAKTMEDAI 176 (179)
Q Consensus 158 ~-~~~~~gl~~m~~~le~~l 176 (179)
. .+...++-..-+.|.+++
T Consensus 185 vN~~~~~~~~~~l~~l~ka~ 204 (207)
T cd08910 185 INWAAKNGVPNFLKDMQKAC 204 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 3 444555555555555554
No 63
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.46 E-value=0.28 Score=38.47 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=45.7
Q ss_pred ecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEc---CCCC-CcHHHHHHHHHHHHHHHHH
Q 041543 95 DHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVD---PVEG-LVLADLLQKYDLGLQRMAK 170 (179)
Q Consensus 95 D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~---p~~g-~~~~~~~~~~~~gl~~m~~ 170 (179)
++..++.+|++.-...|+ ...++++|.+.+ ++|++++..++. |.=| ..+..+...+...|+...+
T Consensus 85 ~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~~----------~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 85 DDGRRTGTFTVSIPGAPV-SISGTMRLRPDG----------GGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQE 153 (159)
T ss_pred CCCeEEEEEEEEecCceE-EEEEEEEEecCC----------CCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHH
Confidence 566777777766433333 678999999965 589999997776 4423 3333444667766666666
Q ss_pred HHHHH
Q 041543 171 TMEDA 175 (179)
Q Consensus 171 ~le~~ 175 (179)
.+.+.
T Consensus 154 ~~~~w 158 (159)
T PF10698_consen 154 FTAEW 158 (159)
T ss_pred HHHhh
Confidence 55443
No 64
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=96.33 E-value=0.49 Score=39.11 Aligned_cols=145 Identities=9% Similarity=-0.047 Sum_probs=82.3
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL 91 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L 91 (179)
+++.+| +++++++|+.+.+-..-.+|.+.+..++.++-=+...--.+..+.. .+ .+. . +.-.++-=|.
T Consensus 49 k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~-~~--~~~----v----spRDfV~vr~ 116 (204)
T cd08904 49 RVEGII-PESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQS-FA--MGS----I----SPRDFVDLVH 116 (204)
T ss_pred EEEEEe-cCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEeccc-cc--CCc----c----cCceEEEEEE
Confidence 567889 9999999999998777889999988887764322111222322210 01 110 0 0011222222
Q ss_pred EE-EecCCcEEEEEEEeccc--c------eeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHH-HHHHHH
Q 041543 92 VT-VDHVQRCLIYEMVDGNI--G------FKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLA-DLLQKY 161 (179)
Q Consensus 92 ~~-~D~~~r~~~Y~~~~~~~--~------~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~-~~~~~~ 161 (179)
.. ++.....+.+..++.+- + -.++..=+-+.|..+++ ++|.++|-+..++- |+-+. .+...+
T Consensus 117 ~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p-------~~t~l~~~~~~Dlk-G~lP~~vv~~~~ 188 (204)
T cd08904 117 IKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENP-------AYSKLVMFVQPELR-GNLSRSVIEKTM 188 (204)
T ss_pred EEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCC-------CceEEEEEEEeCCC-CCCCHHHHHHHh
Confidence 22 23332223333344331 1 23445566778887643 58999999999986 55544 333566
Q ss_pred HHHHHHHHHHHHHHh
Q 041543 162 DLGLQRMAKTMEDAI 176 (179)
Q Consensus 162 ~~gl~~m~~~le~~l 176 (179)
...+-.....|+++|
T Consensus 189 ~~~~~~f~~~~~~~~ 203 (204)
T cd08904 189 PTNLVNLILDAKDGI 203 (204)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666666666666654
No 65
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=94.52 E-value=2.4 Score=35.29 Aligned_cols=143 Identities=10% Similarity=0.004 Sum_probs=79.7
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeE-EE
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSK-ER 90 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~-E~ 90 (179)
+.+..| +..++++|+.+.+-....+|.+.+.+|..++--+...--.|+++... + .|. - ++-+++- -+
T Consensus 50 R~Egvv-~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~-~--~~i-------I-SpRDFVdv~~ 117 (202)
T cd08902 50 KAQGVV-EDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQ-L--LNI-------I-SPREFVDFSY 117 (202)
T ss_pred EEEEEe-cCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccC-C--cCc-------c-CccceEEEEE
Confidence 456778 77889999999987767899999999988763221222237766531 1 111 0 0000111 11
Q ss_pred EEEEecCCcEEEEE--EEeccc--ce---eeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHH-HHHHHH
Q 041543 91 LVTVDHVQRCLIYE--MVDGNI--GF---KSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLAD-LLQKYD 162 (179)
Q Consensus 91 L~~~D~~~r~~~Y~--~~~~~~--~~---~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~-~~~~~~ 162 (179)
.....+ .+ ++=. +.-... ++ .++-.-+=+.|..+++ ..|.++|-+.+|+- |+.+.. +..++-
T Consensus 118 ~~~~~d-~~-~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p-------~k~~~t~~lq~DLk-G~LPqsiIdq~~~ 187 (202)
T cd08902 118 TTQYED-GL-LSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNP-------SHSLLTGYIQTDLR-GMLPQSAVDTAMA 187 (202)
T ss_pred EEEeCC-Ce-EEEEeeecCCCCCCCeEeecccccEEEEEECCCCC-------CceEEEEEEEecCC-CCccHHHHHHHhh
Confidence 122222 11 2111 111111 22 2444455677887654 68999999999986 555443 335666
Q ss_pred HHHHHHHHHHHHHh
Q 041543 163 LGLQRMAKTMEDAI 176 (179)
Q Consensus 163 ~gl~~m~~~le~~l 176 (179)
..+-.....|.++|
T Consensus 188 ~~~~~F~~~Lrk~~ 201 (202)
T cd08902 188 STLVNFYSDLKKAL 201 (202)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666666554
No 66
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=94.43 E-value=1.3 Score=34.92 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=40.1
Q ss_pred CCChhhHhHHhh-CCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEEEecC
Q 041543 19 RATADQIWPLFT-DFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHV 97 (179)
Q Consensus 19 ~apae~VW~~l~-df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~~D~~ 97 (179)
..+.++||.-|- --.+...+.|+|.+|+.+.-. ...-.|.+.+ ++. .++|++....+
T Consensus 17 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~--~~~~~R~v~f------g~~-------------~v~E~v~~~~~- 74 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARNPQLFVPGIDSCEVLSES--DTVLTREVTF------GGA-------------TVRERVTLYPP- 74 (149)
T ss_dssp ---HHHHHHHHHHHHH-GGGT-TT--EEEEEEE---SSEEEEEEEE------TTE-------------EEEEEEEEETT-
T ss_pred ccCHHHHHHHHHHHHhChhhCccccCeEEEEecC--CCeEEEEEEE------CCc-------------EEEEEEEEeCC-
Confidence 457899999884 345567889999999987653 3356898888 333 89998887654
Q ss_pred CcEEEE
Q 041543 98 QRCLIY 103 (179)
Q Consensus 98 ~r~~~Y 103 (179)
+.+.|
T Consensus 75 -~~V~f 79 (149)
T PF08982_consen 75 -ERVDF 79 (149)
T ss_dssp -TEEEE
T ss_pred -cEEEE
Confidence 56777
No 67
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=92.44 E-value=4.3 Score=31.85 Aligned_cols=66 Identities=11% Similarity=-0.015 Sum_probs=48.1
Q ss_pred CCChhhHhHHh-hCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEEEecC
Q 041543 19 RATADQIWPLF-TDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHV 97 (179)
Q Consensus 19 ~apae~VW~~l-~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~~D~~ 97 (179)
-.+.+++|.=| .--.+...+.|+|.+|+.+...++ -..|.+.+. +. .++|+++-.-+
T Consensus 16 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~--~l~Rel~f~------~~-------------~v~e~vt~~~~- 73 (141)
T cd08863 16 TLTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGT--VLERELTFG------PA-------------KIRETVTLEPP- 73 (141)
T ss_pred ccCHHHHHhHHHhhhCCchhcccccceEEEEecCCC--EEEEEEEEC------Cc-------------eEEEEEEecCC-
Confidence 34789999987 455667788999999999865422 356888882 22 78998876543
Q ss_pred CcEEEEEEEe
Q 041543 98 QRCLIYEMVD 107 (179)
Q Consensus 98 ~r~~~Y~~~~ 107 (179)
..+.|.+..
T Consensus 74 -~~v~f~~~~ 82 (141)
T cd08863 74 -SRVHFLQAD 82 (141)
T ss_pred -cEEEEEecC
Confidence 568888775
No 68
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=91.80 E-value=5.4 Score=31.52 Aligned_cols=145 Identities=14% Similarity=0.068 Sum_probs=78.2
Q ss_pred cceeEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCce
Q 041543 7 QKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSW 86 (179)
Q Consensus 7 ~~w~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~ 86 (179)
..+.-++...| +++++++...+-+-.. .|.+.+..++.++--+.. ..+.+.... .|..... +++ ..
T Consensus 44 ~~~~~k~~~~v-~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~-~~i~~~~~~-~~~~~p~--------~~R-Df 109 (206)
T PF01852_consen 44 PIKMFKAEGVV-PASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED-TDIVYFVMK-SPWPGPV--------SPR-DF 109 (206)
T ss_dssp SCEEEEEEEEE-SSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT-EEEEEEEEE--CTTTTS--------SEE-EE
T ss_pred cceEEEEEEEE-cCChHHHHHHHHhhHh--hcccchhhheeeeecCCC-CeEEEEEec-ccCCCCC--------CCc-EE
Confidence 55677899999 8888866666654333 999999888776531111 334443331 1100011 000 12
Q ss_pred eEEEEEEE-ecCCcEEEEEEEecc---------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHH
Q 041543 87 SKERLVTV-DHVQRCLIYEMVDGN---------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLAD 156 (179)
Q Consensus 87 ~~E~L~~~-D~~~r~~~Y~~~~~~---------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~ 156 (179)
+.=|.... .+....+..+-++.+ +....|.+-+.++|.++ +.|.|++....+|. |+.+.-
T Consensus 110 v~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~---------~~~~vt~~~~~D~~-G~iP~~ 179 (206)
T PF01852_consen 110 VFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD---------GRTRVTYVSQVDPK-GWIPSW 179 (206)
T ss_dssp EEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT---------CEEEEEEEEEEESS-SSSHHH
T ss_pred EEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC---------CCceEEEEEEECCC-CCChHH
Confidence 22222222 333334444333322 12346778888999987 57999999999996 555543
Q ss_pred HH-HHHHHHHHHHHHHHHHH
Q 041543 157 LL-QKYDLGLQRMAKTMEDA 175 (179)
Q Consensus 157 ~~-~~~~~gl~~m~~~le~~ 175 (179)
+. .++....-.+.+.+-++
T Consensus 180 ~~n~~~~~~~~~~~~~~~~~ 199 (206)
T PF01852_consen 180 LVNMVVKSQPPNFLKNLRKA 199 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33 33444443444444333
No 69
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=91.66 E-value=7.2 Score=32.72 Aligned_cols=39 Identities=18% Similarity=0.048 Sum_probs=33.8
Q ss_pred EEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeec
Q 041543 11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVH 49 (179)
Q Consensus 11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~ 49 (179)
-++..+|++++++++-++|-|.....+|.+.+.+++.++
T Consensus 54 ~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie 92 (235)
T cd08872 54 LKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVE 92 (235)
T ss_pred EEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEE
Confidence 478888955999999999999999999999888887654
No 70
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=79.10 E-value=36 Score=28.73 Aligned_cols=105 Identities=11% Similarity=0.193 Sum_probs=63.1
Q ss_pred EecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEEEe
Q 041543 16 RVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVD 95 (179)
Q Consensus 16 ~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~~D 95 (179)
.| ..+++.+++++++-..++++.|-+.++....-.++++---..--++ |+- +....-+++-.+
T Consensus 75 li-gysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGF--k~l--------------~E~y~S~Vt~~~ 137 (227)
T KOG3177|consen 75 LI-GYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGF--KPL--------------DERYTSNVTCVK 137 (227)
T ss_pred hh-CCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecC--ccc--------------chhheeeeEEec
Confidence 45 8999999999999999999999998887754432322222222222 211 112222344443
Q ss_pred cCCcEEEEEEEecccce-eeEEEEEEEEeCCCCCCCCCCCCCceEEEEE--EEEcC
Q 041543 96 HVQRCLIYEMVDGNIGF-KSYVSTIKIIPGDDNNHDGQNQSAGCVIEWS--FTVDP 148 (179)
Q Consensus 96 ~~~r~~~Y~~~~~~~~~-~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~--~~~~p 148 (179)
+ .++|...- +..+ .......++.|..+-+ +.|++... |+|..
T Consensus 138 p---~l~kt~~~-d~rLF~~L~t~Wsf~pg~~~p-------~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 138 P---HLTKTVCA-DGRLFNHLITIWSFKPGPNIP-------RTCTLDFSVSFEFKS 182 (227)
T ss_pred c---cceEEeec-cccHHHhhhheeeeccCCCCC-------CeEEEEEEEEEEehh
Confidence 3 25665543 2233 3445666888887333 79999998 55554
No 71
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=73.26 E-value=52 Score=27.24 Aligned_cols=119 Identities=16% Similarity=0.061 Sum_probs=65.0
Q ss_pred cceeEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCC--CCCcEEEEeecccccCCCCCCCCCCCCCCCCC
Q 041543 7 QKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTN--GEPDCIRYCAGFSIPSRAASSSTDDNPPPAAC 84 (179)
Q Consensus 7 ~~w~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~--g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~ 84 (179)
..|. ++++| ++|++.|=..+-+ .-+.|-..+..++.++--+ ..++..+.-...++| +..
T Consensus 52 k~~r--~~~ei-~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~--~RD------------ 112 (205)
T cd08909 52 RLWK--VSVEV-EAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHP--SRD------------ 112 (205)
T ss_pred EEEE--EEEEe-CCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCC--CCE------------
Confidence 3555 57888 8888888666644 5778988777666654222 233322222221122 222
Q ss_pred ceeEEEEEEEecCCc--EEEEEEEecc-cc------eeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHH
Q 041543 85 SWSKERLVTVDHVQR--CLIYEMVDGN-IG------FKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLA 155 (179)
Q Consensus 85 ~~~~E~L~~~D~~~r--~~~Y~~~~~~-~~------~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~ 155 (179)
.+.-|--..|...- .+.+.-+..+ .+ ...+.+-+-++|.+. ++|+|++-..+||- |..+.
T Consensus 113 -~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~---------g~trvt~i~~vDpk-G~~P~ 181 (205)
T cd08909 113 -FVVLRSWRTDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGS---------GKSRLTHICRVDLK-GHSPE 181 (205)
T ss_pred -EEEEEEEEEeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCC---------CCEEEEEEEEecCC-CCChH
Confidence 55555444443222 2222222222 11 223455567788876 68999999999994 55553
No 72
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=69.08 E-value=1.2e+02 Score=29.88 Aligned_cols=124 Identities=13% Similarity=0.036 Sum_probs=68.0
Q ss_pred EEEEEecCCChhhHhHHhhCCC-CccccccceeEEEeecCCCCCCc-EEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543 12 KVSTRVSRATADQIWPLFTDFF-NIHKYFHSLATSYGVHGTNGEPD-CIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE 89 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~-~l~~w~p~i~~~~~~~G~~g~~G-~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E 89 (179)
++..+| ++++++||+.|-+.. .-.+|-..+..|++++--++... +.++++-..+| ... +.-+.+-=
T Consensus 230 KavGVV-~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~--~~i---------spRDFV~~ 297 (719)
T PLN00188 230 KAVGVV-EATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFP--MFV---------WPRDLCYV 297 (719)
T ss_pred EEEEEe-cCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEecccccc--Ccc---------CcceeEEE
Confidence 566789 999999999997666 45689998888877754333322 22333311001 000 00113333
Q ss_pred EEEEEecCC-cEEEEEEEecc--cce------eeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCc
Q 041543 90 RLVTVDHVQ-RCLIYEMVDGN--IGF------KSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLV 153 (179)
Q Consensus 90 ~L~~~D~~~-r~~~Y~~~~~~--~~~------~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~ 153 (179)
|-...++.. ..+.|.-+..+ .+- ....+-+-+.|.... ++..+|.|+|-+.+++. ||.
T Consensus 298 Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~-----~g~~r~lv~~~lqtDlk-GW~ 364 (719)
T PLN00188 298 RYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPR-----NGRPRTQVQHLMQIDLK-GWG 364 (719)
T ss_pred EEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCC-----CCCCceEEEEEEEEccC-ccc
Confidence 333343333 33344444432 121 233456677786532 22369999999999974 444
No 73
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=26.93 E-value=3.7e+02 Score=22.38 Aligned_cols=112 Identities=19% Similarity=0.104 Sum_probs=60.8
Q ss_pred EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeec--CCCCCCcEEEEee--cccccCCCCCCCCCCCCCCCCCcee
Q 041543 12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVH--GTNGEPDCIRYCA--GFSIPSRAASSSTDDNPPPAACSWS 87 (179)
Q Consensus 12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~--G~~g~~G~vR~~~--~~~~p~~~g~~~~~~~~~~~~~~~~ 87 (179)
+++++|++.|++-+-.+|.| -+.|=+.+..+..++ .++..+| .|+. ..++| ... ++
T Consensus 55 k~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~--yY~~~~~~p~p--~RD-------------fv 114 (205)
T cd08907 55 KVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVY--HYVTDSMAPHP--RRD-------------FV 114 (205)
T ss_pred EEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEE--EEEecCCCCCC--Cce-------------EE
Confidence 56677789999999999998 557777666554432 2244454 2222 11222 221 33
Q ss_pred EEEEEEEecCCcEEEEEEEe----c-c------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHH
Q 041543 88 KERLVTVDHVQRCLIYEMVD----G-N------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLA 155 (179)
Q Consensus 88 ~E~L~~~D~~~r~~~Y~~~~----~-~------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~ 155 (179)
.=|--.-|...- .|-|+. . . +....|..-+-++|.+. ++|+|+.-..+++. |..++
T Consensus 115 ~lRsW~~~l~~g--~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~---------g~s~ltyi~rvD~r-G~~P~ 181 (205)
T cd08907 115 VLRMWRSDLPRG--GCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGM---------GRSRLTHICRADLR-GRSPD 181 (205)
T ss_pred EEEEEccCCCCC--CEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCC---------CCeEEEEEEEeCCC-CCCcH
Confidence 333211111110 122222 1 1 11235555666778875 79999999999984 55543
No 74
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.31 E-value=3.4e+02 Score=24.05 Aligned_cols=97 Identities=10% Similarity=0.149 Sum_probs=56.1
Q ss_pred EEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEE
Q 041543 14 STRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVT 93 (179)
Q Consensus 14 s~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~ 93 (179)
+.++ +++++++.+++.|-..+..|.-+...- ..++| |.+-.+ +|+ .+. ++++
T Consensus 178 ~~tf-n~~~~eLy~~fld~~rv~~wt~S~a~l---~~~~~--g~f~lf--------~Gn-------------Vtg-~~~~ 229 (301)
T KOG2936|consen 178 SATF-NCRVDELYEIFLDPERVKAWTRSPAEL---EADPG--GKFSLF--------DGN-------------VTG-EFLE 229 (301)
T ss_pred hhhc-CCCHHHHHHHHhcHHHHHHhcCChhhc---ccCCC--CceEEe--------ccc-------------cee-eeee
Confidence 4456 999999999999988888886533222 33333 344333 343 333 3554
Q ss_pred EecCCc-EEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC
Q 041543 94 VDHVQR-CLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV 149 (179)
Q Consensus 94 ~D~~~r-~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~ 149 (179)
+.+.++ .+.|++-.=+- .+.|||+++..... +.|.+.-...--|.
T Consensus 230 ~e~~K~Iv~kWrl~~Wp~---~~~atI~~~f~~~~--------~~t~l~~~~kgVP~ 275 (301)
T KOG2936|consen 230 LEKNKKIVMKWRLKSWPD---GHDATITLTFYESQ--------GETKLQVKQKGVPI 275 (301)
T ss_pred ecCCCeEEEEEecccCCC---CccceEEEEEecCC--------CceEEEEEecCCCc
Confidence 544333 45566544222 35688888887642 56766655444444
No 75
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=21.03 E-value=2.5e+02 Score=18.96 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=29.3
Q ss_pred cEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCC
Q 041543 99 RCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVE 150 (179)
Q Consensus 99 r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~ 150 (179)
|...|+-. -++......+.+.|.++. +...+.|++.++|..
T Consensus 6 H~T~Y~Y~---~pV~~~~~~lrl~P~~~~--------~Q~v~~~~l~i~P~~ 46 (82)
T PF08379_consen 6 HRTRYRYD---APVSLSPHRLRLTPRSDP--------GQRVLSWSLTIEPEP 46 (82)
T ss_pred EEEEEEcC---ChHHhceeeeEEECCCCC--------CccEEEEEEEEcCCC
Confidence 44455422 345566788999999874 688999999999853
No 76
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=20.96 E-value=5.1e+02 Score=21.85 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=80.5
Q ss_pred eeEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCc--EEEEeecccccCCCCCCCCCCCCCCCCCce
Q 041543 9 WEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPD--CIRYCAGFSIPSRAASSSTDDNPPPAACSW 86 (179)
Q Consensus 9 w~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G--~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~ 86 (179)
-+=++..++.+++|+.|-+++-|-.=-.+|=-.+...+.++-+ ..+| -+|+..-++.|-.++. + .
T Consensus 53 ~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d-~~tg~~vv~w~~kfP~p~~~Rd-----------Y-V 119 (219)
T KOG2761|consen 53 YEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEED-PVTGTEVVYWVKKFPFPMSNRD-----------Y-V 119 (219)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeec-CCCCceEEEEEEeCCcccCCcc-----------E-E
Confidence 3446778888999999999998765567887666666554433 2223 4676655544544442 1 1
Q ss_pred eEEEEEEEecCCcEEEEEEEe----cc-------cceeeEEEEEEEE-eC-CCCCCCCCCCCCceEEEEEEEEcCCCCCc
Q 041543 87 SKERLVTVDHVQRCLIYEMVD----GN-------IGFKSYVSTIKII-PG-DDNNHDGQNQSAGCVIEWSFTVDPVEGLV 153 (179)
Q Consensus 87 ~~E~L~~~D~~~r~~~Y~~~~----~~-------~~~~~y~at~~v~-p~-~~~~~~~~~~~~~t~v~W~~~~~p~~g~~ 153 (179)
..=|+..-|+ + ..|-+.. .. ..+..|.+-+.+. +. .++ +++|.++..+-.+|-.+..
T Consensus 120 ~~Rr~~~~~~-k--~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~-------~~~~~~~~~~~~~p~~~iP 189 (219)
T KOG2761|consen 120 YVRRWWESDE-K--DYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGD-------EQGCACEYLYFHNPGGGIP 189 (219)
T ss_pred EEEEEEecCC-c--eEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCC-------CCccEEEEEEEECCCCCCc
Confidence 2223443432 2 2222222 11 2345677766666 22 111 1689999887777765555
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHh
Q 041543 154 LADLL----QKYDLGLQRMAKTMEDAI 176 (179)
Q Consensus 154 ~~~~~----~~~~~gl~~m~~~le~~l 176 (179)
..... .-+-.+++.|.+++.+++
T Consensus 190 ~~~v~~~~~~gmp~~vkKm~~a~~~Y~ 216 (219)
T KOG2761|consen 190 KWVVKLAVRKGMPGAVKKMEKALLAYQ 216 (219)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhh
Confidence 44333 334555556666555554
No 77
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=20.95 E-value=48 Score=26.56 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=40.2
Q ss_pred CceeEEEEEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEE-EEEcCC
Q 041543 84 CSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWS-FTVDPV 149 (179)
Q Consensus 84 ~~~~~E~L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~-~~~~p~ 149 (179)
.||+.-+=-..|+..+++.-.+.+.++.+.+|.++|---.-+ +|+++.|- -+++|.
T Consensus 53 ~SWAvPkGPs~dp~~kRLAv~~EDHpl~Y~~FEG~IP~g~YG----------aG~V~iWD~Gty~~~ 109 (156)
T TIGR02777 53 KSWAVPKGPSLDPADKRLAVHVEDHPLDYADFEGTIPKGEYG----------AGTVIVWDRGTWEPE 109 (156)
T ss_pred EEeEcCcCCCCCcccceeeeEccCccchhccccccccCCccC----------CccEEEEeCceEEeC
Confidence 457777777778888888888888888887887776422222 58999998 566664
Done!