Query         041543
Match_columns 179
No_of_seqs    119 out of 689
Neff          6.1 
Searched_HMMs 13730
Date          Mon Mar 25 13:48:51 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041543.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041543hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d3cnwa1 d.129.3.8 (A:3-140) Un  99.9 1.4E-26 9.9E-31  174.0  20.1  129   12-173     5-137 (138)
  2 d1e09a_ d.129.3.1 (A:) Major t  99.9 1.2E-22   9E-27  158.3  16.0  140   13-178     7-153 (159)
  3 d1fm4a_ d.129.3.1 (A:) Major t  99.9 3.5E-22 2.6E-26  155.7  15.8  141   12-178     6-153 (159)
  4 d1icxa_ d.129.3.1 (A:) Plant p  99.9 8.3E-22   6E-26  153.2  14.8  140   13-178     7-151 (155)
  5 d1txca1 d.129.3.1 (A:1-147) Pl  99.9 1.8E-21 1.3E-25  149.7  15.8  136   12-173     6-147 (147)
  6 d2bk0a1 d.129.3.1 (A:2-154) Ma  99.9   4E-21 2.9E-25  148.9  17.5  139   12-178     6-152 (153)
  7 d1xdfa1 d.129.3.1 (A:1-157) Pl  99.9 2.3E-21 1.7E-25  150.9  14.6  140   12-178     6-152 (157)
  8 d2b79a1 d.129.3.9 (A:1-137) Hy  99.7 4.6E-15 3.4E-19  108.1  16.5  133   11-177     3-136 (137)
  9 d2d4ra1 d.129.3.6 (A:2-147) Hy  99.6 6.7E-15 4.9E-19  108.3  16.7  137   12-179     4-144 (146)
 10 d2rera1 d.129.3.6 (A:1-155) Mu  99.6 1.6E-13 1.1E-17  101.4  17.9  136   13-176     7-148 (155)
 11 d1vjha_ d.129.3.1 (A:) Hypothe  99.5 8.2E-14   6E-18  103.4  13.7   81   86-178    35-119 (120)
 12 d2ns9a1 d.129.3.10 (A:10-156)   99.5 3.2E-13 2.4E-17   97.4  14.2  139   12-179     6-147 (147)
 13 d2qpva1 d.129.3.8 (A:1-133) Un  99.2 1.4E-10   1E-14   85.7  12.6  122   12-173     8-132 (133)
 14 d2pcsa1 d.129.3.10 (A:1-147) H  99.1 6.1E-10 4.4E-14   81.0  14.0  141   10-178     2-146 (147)
 15 d1xuva_ d.129.3.5 (A:) Hypothe  99.0 6.8E-09   5E-13   77.6  13.2  139   11-177    14-156 (163)
 16 d1t17a_ d.129.3.6 (A:) Hypothe  98.9 8.8E-09 6.4E-13   76.2  13.0  135   12-176     5-142 (148)
 17 d2il5a1 d.129.3.5 (A:5-168) Hy  98.8 7.6E-08 5.6E-12   71.9  15.1  142   11-178     9-160 (164)
 18 d1xfsa_ d.129.3.5 (A:) Hypothe  98.6 5.4E-07   4E-11   67.1  13.7  139   10-177     6-160 (165)
 19 d1z94a1 d.129.3.5 (A:2-144) Hy  98.6   1E-06 7.4E-11   63.9  14.8  134   12-173     5-141 (143)
 20 d2nn5a1 d.129.3.5 (A:1-160) Hy  98.5 1.5E-06 1.1E-10   65.8  14.1  119   12-174    15-134 (160)
 21 d3elia1 d.129.3.5 (A:2-144) Un  98.4 5.5E-06   4E-10   59.7  13.1  133   12-176     4-142 (143)
 22 d1xn6a_ d.129.3.5 (A:) Hypothe  98.3   6E-06 4.3E-10   60.5  13.3  123   11-176    10-141 (143)
 23 d1xn5a_ d.129.3.5 (A:) Hypothe  98.3 4.3E-06 3.2E-10   60.2  11.1   92   12-146     8-99  (138)
 24 d1zxfa1 d.129.3.5 (A:1-155) Ca  98.1 8.9E-06 6.5E-10   59.6   9.9  103   12-145     7-116 (155)
 25 d2k5ga1 d.129.3.5 (A:1-183) Un  97.8 0.00016 1.1E-08   54.6  12.7  111   11-145    21-134 (183)
 26 d1jssa_ d.129.3.2 (A:) Cholest  97.8 0.00038 2.8E-08   52.4  14.9  146   11-176    46-198 (199)
 27 d1em2a_ d.129.3.2 (A:) Lipid t  97.8 0.00052 3.8E-08   52.1  14.9  143   12-176    55-209 (214)
 28 d1x53a1 d.129.3.5 (A:8-139) Ac  97.7   5E-05 3.7E-09   55.0   7.2   96   12-148     7-105 (132)
 29 d1ln1a_ d.129.3.2 (A:) Phospha  97.5  0.0023 1.6E-07   48.0  14.1  140   12-176    48-200 (203)
 30 d2psoa1 d.129.3.2 (A:908-1104)  96.2   0.084 6.1E-06   39.1  13.8  133   12-170    47-192 (197)
 31 d2ffsa1 d.129.3.7 (A:1-151) Hy  94.0    0.74 5.4E-05   33.6  14.5   67   18-107    18-85  (151)

No 1  
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}
Probab=99.95  E-value=1.4e-26  Score=174.04  Aligned_cols=129  Identities=22%  Similarity=0.392  Sum_probs=109.1

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL   91 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L   91 (179)
                      .+|++| +||||+||++|+||+++++|+|.+.+|+...+     |++|.+.+.     +|.             .+.|+|
T Consensus         5 ~~si~I-~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~~-----G~~R~~~~~-----~g~-------------~~~E~l   60 (138)
T d3cnwa1           5 TTSMEI-FGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLANP-----DGD-------------TIIERL   60 (138)
T ss_dssp             EEEEEE-SSCHHHHHHHHCCTTCGGGTCTTCSEEEEEGG-----GTEEEEECT-----TCC-------------EEEEEE
T ss_pred             EEEEEE-eCCHHHHHHHHhCccchHHHhcccceeEeecC-----ceeEEEEec-----CCc-------------eeEEEE
Confidence            679999 99999999999999999999999999987432     789999872     565             899999


Q ss_pred             EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHH----HHHHHHHHHHH
Q 041543           92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLAD----LLQKYDLGLQR  167 (179)
Q Consensus        92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~----~~~~~~~gl~~  167 (179)
                      +.+|+.+|+++|+++++++++.+|.++++|.|.+++        ++|+|+|+++|+|. +...+.    +..+|+.+|++
T Consensus        61 ~~~d~~~~~~~y~~~~~~~p~~~~~~~~~l~p~~~g--------~~t~v~w~~~f~p~-~~~~~~~~~~~~~~~~~~l~~  131 (138)
T d3cnwa1          61 EVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTES--------NTSLVEWSGTFTPV-EVSDEEAINLFHGIYSDGLKA  131 (138)
T ss_dssp             EEEETTTTEEEEEEEECSSSEEEEEEEEEEEECSST--------TCEEEEEEEEEEES-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCcEEEEEEecCCCcceeeEEEEEEEECCCC--------CeEEEEEEEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998763        57999999999985 344443    33566777777


Q ss_pred             HHHHHH
Q 041543          168 MAKTME  173 (179)
Q Consensus       168 m~~~le  173 (179)
                      |++++.
T Consensus       132 L~~~f~  137 (138)
T d3cnwa1         132 LQQAFL  137 (138)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            776653


No 2  
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}
Probab=99.89  E-value=1.2e-22  Score=158.34  Aligned_cols=140  Identities=13%  Similarity=0.202  Sum_probs=115.2

Q ss_pred             EEEEecCCChhhHhHHh-hCCCCc-cccccc-eeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543           13 VSTRVSRATADQIWPLF-TDFFNI-HKYFHS-LATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE   89 (179)
Q Consensus        13 vs~~i~~apae~VW~~l-~df~~l-~~w~p~-i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E   89 (179)
                      .++++ ++||+++|+++ +||.++ ++++|. +.+|+.++| +|++|+||.+++.  +  +|           ....+||
T Consensus         7 ~E~~~-~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eG-dg~~GsIr~~~~~--~--~~-----------~~~~~KE   69 (159)
T d1e09a_           7 SEFTS-EIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEG-DGGPGTIKKITFG--E--GS-----------QYGYVKH   69 (159)
T ss_dssp             EEEEE-SSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEES-SSSTTCEEEEEEC--C--SS-----------SCEEEEE
T ss_pred             EEEee-cCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcC-CCCcCcEEEEEEc--C--CC-----------CcEEEEE
Confidence            45666 89999999986 799985 899996 567787788 4789999999983  2  22           2458999


Q ss_pred             EEEEEecCCcEEEEEEEeccc---ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcH-HHHHHHHHHHH
Q 041543           90 RLVTVDHVQRCLIYEMVDGNI---GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVL-ADLLQKYDLGL  165 (179)
Q Consensus        90 ~L~~~D~~~r~~~Y~~~~~~~---~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~-~~~~~~~~~gl  165 (179)
                      ||+.+|+.+|+++|++++|++   .+.+|..++++.+.++         ++|.++|+++|++..+..+ +.-...+...+
T Consensus        70 rie~iD~~~~~~~y~viEGd~l~~~~~s~~~~~~~~~~~~---------~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~  140 (159)
T d1e09a_          70 KIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPS---------GGSIIKSTSHYHTKGNVEIKEEHVKAGKEKA  140 (159)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTGGGEEEEEEEEEECCCTT---------SSEEEEEEEEEEECSSCCCCHHHHHHHHHHH
T ss_pred             EEEEEcccccEEEEEEEecccccccEEEEEEEEEEccCCC---------CCcEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            999999999999999999985   5889999999999887         6899999999998765443 33335566777


Q ss_pred             HHHHHHHHHHhhc
Q 041543          166 QRMAKTMEDAIVQ  178 (179)
Q Consensus       166 ~~m~~~le~~l~~  178 (179)
                      ..|.+.+|++|++
T Consensus       141 ~~~~K~iEayLla  153 (159)
T d1e09a_         141 SNLFKLIETYLKG  153 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            8899999999986


No 3  
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}
Probab=99.88  E-value=3.5e-22  Score=155.66  Aligned_cols=141  Identities=18%  Similarity=0.273  Sum_probs=113.7

Q ss_pred             EEEEEecCCChhhHhHHh-hCCCC-ccccccce-eEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeE
Q 041543           12 KVSTRVSRATADQIWPLF-TDFFN-IHKYFHSL-ATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSK   88 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l-~df~~-l~~w~p~i-~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~   88 (179)
                      ..++.+ ++||+++|+++ .|+.+ +++|+|.+ .+|+.++| +|++|+||.+++.  +  ++           ....+|
T Consensus         6 e~E~~~-~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eG-dg~~GsIr~~~~~--~--~~-----------~~~~~K   68 (159)
T d1fm4a_           6 ETEATS-VIPAARMFKAFILDGDKLVPKVAPQAISSVENIEG-NGGPGTIKKINFP--E--GF-----------PFKYVK   68 (159)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEEC-SSSTTCEEEEECC--T--TS-----------SSSEEE
T ss_pred             EEEeec-cCCHHHHHHHHHhCcccccccccCcceEEEEEECC-CCCCCCEEEEEec--C--CC-----------CceEEE
Confidence            345667 99999999985 79998 59999964 57777778 4789999999983  1  22           245899


Q ss_pred             EEEEEEecCCcEEEEEEEecc-c--ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcH-HHHHHHHHHH
Q 041543           89 ERLVTVDHVQRCLIYEMVDGN-I--GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVL-ADLLQKYDLG  164 (179)
Q Consensus        89 E~L~~~D~~~r~~~Y~~~~~~-~--~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~-~~~~~~~~~g  164 (179)
                      |||+.+|+++|+++|++++|+ +  .+++|..+++|.|.++         ++|.++|+.+|++..+..+ ++-...+...
T Consensus        69 erve~iD~~~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~---------gg~v~kwt~eYe~~~~~~~~~e~~k~~ke~  139 (159)
T d1fm4a_          69 DRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPD---------GGCVLKISNKYHTKGNHEVKAEQVKASKEM  139 (159)
T ss_dssp             EEEEEEETTTTEEEEEEEEBTTBTTTEEEEEEEEEEEECTT---------SCEEEEEEEEEEESTTCCCCTTTTHHHHHH
T ss_pred             EEEEEEcccccEEEEEEEeccccccceEEEEEEEEEecCCC---------CceEEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence            999999999999999999987 3  6899999999999987         7999999999998754332 2223445666


Q ss_pred             HHHHHHHHHHHhhc
Q 041543          165 LQRMAKTMEDAIVQ  178 (179)
Q Consensus       165 l~~m~~~le~~l~~  178 (179)
                      +.+|.+.+|++|+|
T Consensus       140 ~~~~~K~iE~YLla  153 (159)
T d1fm4a_         140 GETLLRAVESYLLA  153 (159)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            77889999999986


No 4  
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}
Probab=99.87  E-value=8.3e-22  Score=153.19  Aligned_cols=140  Identities=15%  Similarity=0.240  Sum_probs=118.9

Q ss_pred             EEEEecCCChhhHhHHh-hCCCCc-cccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543           13 VSTRVSRATADQIWPLF-TDFFNI-HKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER   90 (179)
Q Consensus        13 vs~~i~~apae~VW~~l-~df~~l-~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~   90 (179)
                      .++++ .+||+++|.++ .|+.+| ++++|.|.+|+.++|+ |++|+||.+++.  +  ++           ....+|||
T Consensus         7 ~E~~~-~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGd-Gg~GsIk~~~~~--~--~~-----------~~~~~Ker   69 (155)
T d1icxa_           7 NEQSS-TVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-GGPGTIKKIIAI--H--DG-----------HTSFVLHK   69 (155)
T ss_dssp             EEEEE-SSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESS-SSTTCEEEEEEE--S--SS-----------SEEEEEEE
T ss_pred             EeEEe-cCCHHHHhhhheeccchhchhhhhheeeeeEecCC-CccceEEEEEec--c--CC-----------ceEEEEEE
Confidence            34556 99999999986 699996 8999999999999996 889999999984  1  23           24589999


Q ss_pred             EEEEecCCcEEEEEEEeccc---ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 041543           91 LVTVDHVQRCLIYEMVDGNI---GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQR  167 (179)
Q Consensus        91 L~~~D~~~r~~~Y~~~~~~~---~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~  167 (179)
                      |+.+|+++|+++|++++|+.   .+.+|..++++.|.++         ++|.++|+.+|++..+...+.-...+.....+
T Consensus        70 ie~iD~en~~~~y~viEGd~l~~~~~~~~~~~k~~~~~~---------~g~i~k~t~eYe~~g~~~~e~~~~~~ke~~~~  140 (155)
T d1icxa_          70 LDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPD---------GGSIGKINVKFHTKGDVLSETVRDQAKFKGLG  140 (155)
T ss_dssp             EEEEEGGGTEEEEEEEEETTSCTTEEEEEEEEEEEECGG---------GCEEEEEEEEEEESSSSCCHHHHTTHHHHHHH
T ss_pred             EEEEcccccEEEEEEEecccccccEEEEEEEEEEecCCC---------CCeEEEEEEEEEECCCCCChhhHHHHHHHHHH
Confidence            99999999999999999984   6899999999999987         68999999999998655555545556677779


Q ss_pred             HHHHHHHHhhc
Q 041543          168 MAKTMEDAIVQ  178 (179)
Q Consensus       168 m~~~le~~l~~  178 (179)
                      |.+.+|++|+|
T Consensus       141 ~fK~iE~YLla  151 (155)
T d1icxa_         141 LFKAIEGYVLA  151 (155)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999986


No 5  
>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}
Probab=99.87  E-value=1.8e-21  Score=149.74  Aligned_cols=136  Identities=14%  Similarity=0.169  Sum_probs=105.0

Q ss_pred             EEEEEecCCChhhHhH-HhhCCCCccccccc-eeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543           12 KVSTRVSRATADQIWP-LFTDFFNIHKYFHS-LATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE   89 (179)
Q Consensus        12 ~vs~~i~~apae~VW~-~l~df~~l~~w~p~-i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E   89 (179)
                      ..++++ ++||+++|. ++.||++++.|+|. |.+|+.++| +|++|+||.+++.     .|.          ....++|
T Consensus         6 ~~E~~~-~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eG-dg~~GsIr~~~~~-----~g~----------~~~~~kE   68 (147)
T d1txca1           6 RDETSS-SVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEG-NGGVGTIKKITAN-----EGD----------KTSFVLQ   68 (147)
T ss_dssp             EEEEEE-SSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEES-SSSTTCEEEEEEE-----ETT----------EEEEEEE
T ss_pred             EEEEec-cCCHHHHHHhhhcccccCccccccccccceeecC-CCCcceEEEEEEc-----CCC----------cceEEEE
Confidence            346667 999999997 55799999888886 778888888 5789999999984     222          1348999


Q ss_pred             EEEEEecCCcEEEEEEEeccc---ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCc-HHHHHHHHHHHH
Q 041543           90 RLVTVDHVQRCLIYEMVDGNI---GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLV-LADLLQKYDLGL  165 (179)
Q Consensus        90 ~L~~~D~~~r~~~Y~~~~~~~---~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~-~~~~~~~~~~gl  165 (179)
                      ||+.+|+++|+++|++++++.   ++.+|..++++.|.++         ++|.++|+.+|++..+.. .++-........
T Consensus        69 rl~~iD~~~~~~~y~iiEGd~l~~~~~s~~~~~~~~~~~~---------ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~  139 (147)
T d1txca1          69 KVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSG---------GGSISKVTLKFHTKGDAPLSDAVRDDALAKG  139 (147)
T ss_dssp             EEEEEEGGGTEEEEEEEESTTSCTTEEEEEEEEEEEECST---------TCEEEEEEEEEEETTSCCCCHHHHHHHHHHH
T ss_pred             EEEEEccCCcEEEEEEEccCccccceEEEEEEEEEecCCC---------CCcEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            999999999999999999863   6899999999999887         789999999998764332 222223344455


Q ss_pred             HHHHHHHH
Q 041543          166 QRMAKTME  173 (179)
Q Consensus       166 ~~m~~~le  173 (179)
                      .+|-+++|
T Consensus       140 ~~~~KavE  147 (147)
T d1txca1         140 AGFFKAIE  147 (147)
T ss_dssp             HHHHHHHH
T ss_pred             hhhheecC
Confidence            56666554


No 6  
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}
Probab=99.87  E-value=4e-21  Score=148.93  Aligned_cols=139  Identities=14%  Similarity=0.204  Sum_probs=112.9

Q ss_pred             EEEEEecCCChhhHhHHh-hCCCCc-cccccc-eeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeE
Q 041543           12 KVSTRVSRATADQIWPLF-TDFFNI-HKYFHS-LATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSK   88 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l-~df~~l-~~w~p~-i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~   88 (179)
                      ..++++ ++||+++|+++ .|+.++ |+++|. |.+|+ ++|+ |++|+||.+++.    .+|           ....++
T Consensus         6 e~E~~~-~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve-veGd-G~~GsIr~~~~~----~~~-----------~~~~~K   67 (153)
T d2bk0a1           6 VLELTS-SVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGD-GGPGTLKIITLP----DGG-----------PITTMT   67 (153)
T ss_dssp             EEEEEE-SSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE-EESS-SSTTCEEEEECC----TTS-----------SCCEEE
T ss_pred             EEEEec-cCCHHHHHHHHhhcccccccccccceeeEEE-EECC-CCCCeEEEEEEe----cCc-----------cceeeE
Confidence            356677 99999999987 688884 999995 55666 5885 899999999983    123           245899


Q ss_pred             EEEEEEecCCcEEEEEEEeccc---ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCC--cHHHHHHHHHH
Q 041543           89 ERLVTVDHVQRCLIYEMVDGNI---GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGL--VLADLLQKYDL  163 (179)
Q Consensus        89 E~L~~~D~~~r~~~Y~~~~~~~---~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~--~~~~~~~~~~~  163 (179)
                      ||++++|+++|+++|++++|+.   .+++|..++++.|.++         ++|.++|+.+|++..+.  .++.+ ..+..
T Consensus        68 erve~iD~~~~~~~y~viEGd~l~~~y~s~~~~~~~~~~~~---------ggsv~k~t~eYe~~~~~~~~~e~~-k~~~e  137 (153)
T d2bk0a1          68 LRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTAD---------GGSICKTTAIFHTKGDAVVPEENI-KYANE  137 (153)
T ss_dssp             EEEEEEETTTTEEEEEEEESGGGTTTEEEEEEEEEEEECTT---------SCEEEEEEEEEEESTTCCCCHHHH-HHHHH
T ss_pred             EEEEEEecCccEEEEEEEecccccccEEEEEEEEEEecCCC---------CCeEEEEEEEEEECCCCCCCHHHH-HHHHH
Confidence            9999999999999999999973   4899999999999987         78999999999987543  33333 44455


Q ss_pred             HHHHHHHHHHHHhhc
Q 041543          164 GLQRMAKTMEDAIVQ  178 (179)
Q Consensus       164 gl~~m~~~le~~l~~  178 (179)
                      .+.+|.+.+|++|+|
T Consensus       138 ~~~~~~K~iE~YLla  152 (153)
T d2bk0a1         138 QNTALFKALEAYLIA  152 (153)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            577888999999986


No 7  
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}
Probab=99.86  E-value=2.3e-21  Score=150.94  Aligned_cols=140  Identities=13%  Similarity=0.198  Sum_probs=117.0

Q ss_pred             EEEEEecCCChhhHhHHh-hCCCCc-cccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543           12 KVSTRVSRATADQIWPLF-TDFFNI-HKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE   89 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l-~df~~l-~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E   89 (179)
                      ..++++ .+||+++|+++ .|+.++ +++.+.|.+|+.++|+ |++|+||.+++.  +  ++           ....+||
T Consensus         6 ~~E~~~-~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGd-G~~GsIr~~~~~--~--g~-----------~~~~~Ke   68 (157)
T d1xdfa1           6 EDESTS-TIAPARLYKALVKDADAIIPKAVEAIQSIETVEGN-GGPGTIKKLTLI--E--GG-----------ETKYVLH   68 (157)
T ss_dssp             EEEEEE-SSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESS-SSTTCEEEEEEE--E--TT-----------EEEEEEE
T ss_pred             EEEEec-cCCHHHHHHHHhhchhhccccchhheecceeecCC-CCCCcEEEEEEc--C--CC-----------ccEEEEE
Confidence            356677 99999999986 699985 8988899999999996 899999999984  1  22           2348999


Q ss_pred             EEEEEecCCcEEEEEEEecc-c--ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCc--HHHHHHHHHHH
Q 041543           90 RLVTVDHVQRCLIYEMVDGN-I--GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLV--LADLLQKYDLG  164 (179)
Q Consensus        90 ~L~~~D~~~r~~~Y~~~~~~-~--~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~--~~~~~~~~~~g  164 (179)
                      ||+.+|+++++++|++++|+ +  .+++|..++++.|.++         ++|.++|+.+|++..+..  ++.+ ..+...
T Consensus        69 rie~vD~e~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~---------ggsv~k~t~eYe~~~~~~~~~e~i-k~~~e~  138 (157)
T d1xdfa1          69 KIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGAN---------GGSIGKVTIKIETKGDAQPNEEEG-KAAKAR  138 (157)
T ss_dssp             EEEEEEGGGTEEEEEEESSTTSCTTEEEEEEEEEEEECTT---------SSEEEEEEEEEEESSSSCCCHHHH-HHHHHH
T ss_pred             EEEEEechhcEEEEEEEecccccccEEEEEEEEEEEcCCC---------CceEEEEEEEEEECCCCCCCHHHH-HHHHHH
Confidence            99999999999999999997 3  5899999999999987         799999999999875533  3333 455667


Q ss_pred             HHHHHHHHHHHhhc
Q 041543          165 LQRMAKTMEDAIVQ  178 (179)
Q Consensus       165 l~~m~~~le~~l~~  178 (179)
                      +.+|.+.+|++|++
T Consensus       139 ~~~~~K~iEaYLla  152 (157)
T d1xdfa1         139 GDAFFKAIENYLSA  152 (157)
T ss_dssp             HHTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            78899999999986


No 8  
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}
Probab=99.65  E-value=4.6e-15  Score=108.12  Aligned_cols=133  Identities=10%  Similarity=0.052  Sum_probs=95.6

Q ss_pred             EEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543           11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER   90 (179)
Q Consensus        11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~   90 (179)
                      =+.++.| +||+|+||++++|+.++++|+|.+..++. .+ +..+|....+...     ++.             .+..+
T Consensus         3 ~s~si~I-~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~-~~-~~~~G~~~~~~~~-----~~~-------------~~~~~   61 (137)
T d2b79a1           3 FSFELAV-NTKKEDAWTYYSQVNQWFVWEGDLEQISL-EG-EFTTGQKGKMKME-----DMP-------------ELAFT   61 (137)
T ss_dssp             EEEEEEE-SSCHHHHHHHHHCGGGGGGTSTTEEEEEE-SS-SSSTTCEEEEEET-----TSC-------------CEEEE
T ss_pred             eEEEEEE-cCCHHHHHHHHhhhhhCccccCcccceee-cc-cccceEEEEEEEc-----CCc-------------ceeee
Confidence            3678999 99999999999999999999999988886 44 3356766666551     333             56778


Q ss_pred             EEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCC-CcHHHHHHHHHHHHHHHH
Q 041543           91 LVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEG-LVLADLLQKYDLGLQRMA  169 (179)
Q Consensus        91 L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g-~~~~~~~~~~~~gl~~m~  169 (179)
                      ++++++. ++++|+...   ++..+.....+.+.++         ++|+|+|++++.+... .....+...+..++....
T Consensus        62 v~~~~p~-~~~~~~~~~---~~~~~~~~~~~~~~~~---------g~t~vt~~~~~~g~~~~~~~~~~~~~v~~~~~~~l  128 (137)
T d2b79a1          62 LVEVREN-QCFSDLTAT---PFGNVLFEHEILENPD---------GTISLRHSVSLTDSDTTEEALAFLKQIFADVPESV  128 (137)
T ss_dssp             ECCCBTT-TEEEEEEEE---TTEEEEEEEEEEECTT---------SCEEEEEEEEECSCSCCTTHHHHHHHHHTTHHHHH
T ss_pred             eecccCC-cEEEEEecc---cceeeeeEEEEccCCC---------CcEEEEEEEecccccchHHHHHHHHHHHHHHHHHH
Confidence            9999885 679997543   4557788888999886         6899999999986532 323334444555555555


Q ss_pred             HHHHHHhh
Q 041543          170 KTMEDAIV  177 (179)
Q Consensus       170 ~~le~~l~  177 (179)
                      ++|.+.++
T Consensus       129 ~~LK~~~E  136 (137)
T d2b79a1         129 GKLKQILE  136 (137)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            55555444


No 9  
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}
Probab=99.64  E-value=6.7e-15  Score=108.33  Aligned_cols=137  Identities=14%  Similarity=0.209  Sum_probs=95.0

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL   91 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L   91 (179)
                      +.+++| +||+++||++|+||.++++|+|.+..|+.+.++++..+....+...     ++.           . ....++
T Consensus         4 ~~~~~I-~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~~~~~~-----~~~-----------~-~~~~~~   65 (146)
T d2d4ra1           4 RAERYI-PAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAM-----GKK-----------V-RWLEEE   65 (146)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEET-----TEE-----------E-EEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEEEEEee-----eee-----------E-EEEEEE
Confidence            678899 9999999999999999999999999998865543333222222221     111           1 344444


Q ss_pred             EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC----CCCcHHHHHHHHHHHHHH
Q 041543           92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV----EGLVLADLLQKYDLGLQR  167 (179)
Q Consensus        92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~----~g~~~~~~~~~~~~gl~~  167 (179)
                      + .++..+.+.|++..++  +..|.++++|.|.++          ||.|+|+++++..    .+.....+...++..++.
T Consensus        66 ~-~~~~~~~i~~~~~~g~--~~~~~g~w~l~~~~~----------gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (146)
T d2d4ra1          66 E-WDDENLRNRFFSPEGD--FDRYEGTWVFLPEGE----------GTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVES  132 (146)
T ss_dssp             E-EETTTTEEEEEEEEES--CSEEEEEEEEEECSS----------SEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHH
T ss_pred             E-EcCCCCEEEEEEccCC--cceEEEEEEEEecCC----------ceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHH
Confidence            4 4667889999999875  457899999999874          7999999888742    122223344666666777


Q ss_pred             HHHHHHHHhhcC
Q 041543          168 MAKTMEDAIVQA  179 (179)
Q Consensus       168 m~~~le~~l~~~  179 (179)
                      |.+.|++.+.++
T Consensus       133 ~l~~l~~~~~~~  144 (146)
T d2d4ra1         133 LLKGLEERVLAA  144 (146)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            777766666543


No 10 
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}
Probab=99.57  E-value=1.6e-13  Score=101.37  Aligned_cols=136  Identities=17%  Similarity=0.118  Sum_probs=93.4

Q ss_pred             EEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEE
Q 041543           13 VSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLV   92 (179)
Q Consensus        13 vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~   92 (179)
                      -|++| +||+++||++|+|+.++++|+|.+..|........+.+....+...  +  ++.            ....+..+
T Consensus         7 ~si~I-~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~------------~~~~~~~~   69 (155)
T d2rera1           7 NSIVV-NAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPD--A--NGR------------VWEWVSHR   69 (155)
T ss_dssp             EEEEE-SSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCC--T--TSC------------CCEEEEEE
T ss_pred             EEEEE-CCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEe--e--eee------------eEEEEEEE
Confidence            47899 9999999999999999999999999998765433333332222221  1  221            14445556


Q ss_pred             EEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEc--CCCCCcH----HHHHHHHHHHHH
Q 041543           93 TVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVD--PVEGLVL----ADLLQKYDLGLQ  166 (179)
Q Consensus        93 ~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~--p~~g~~~----~~~~~~~~~gl~  166 (179)
                      ..++..+.+.|... ...++..+.++++|.|.+          +||.|+|+++++  +......    ..+...+...|+
T Consensus        70 ~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~----------~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  138 (155)
T d2rera1          70 VPDKGSRTVRAHRV-ETGPFAYMNLHWTYRAVA----------GGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANME  138 (155)
T ss_dssp             EEEGGGTEEEEEES-SCTTEEEEEEEEEEEEET----------TEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCccEEEEEee-cCccceeeEEEEEEeecC----------CccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHH
Confidence            66777777877764 345678899999999987          489999987665  4222222    334456777778


Q ss_pred             HHHHHHHHHh
Q 041543          167 RMAKTMEDAI  176 (179)
Q Consensus       167 ~m~~~le~~l  176 (179)
                      +|++.+|+.-
T Consensus       139 ~lk~~~E~~~  148 (155)
T d2rera1         139 RIKKIIEDRH  148 (155)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhHH
Confidence            8888777643


No 11 
>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.54  E-value=8.2e-14  Score=103.44  Aligned_cols=81  Identities=21%  Similarity=0.340  Sum_probs=67.6

Q ss_pred             eeEEEEEEEecCCcEEEEEEEeccc--ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCc--HHHHHHHH
Q 041543           86 WSKERLVTVDHVQRCLIYEMVDGNI--GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLV--LADLLQKY  161 (179)
Q Consensus        86 ~~~E~L~~~D~~~r~~~Y~~~~~~~--~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~--~~~~~~~~  161 (179)
                      ..+|||.++|+++++++|++++|++  .+++|..+++++|.+++        +||.++|+++|++..+..  +..+    
T Consensus        35 ~~KerVe~vD~en~sity~vieGdvl~~yksf~~~i~~~p~~~g--------~gsi~kwt~eYek~~~~~p~p~~~----  102 (120)
T d1vjha_          35 NGKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVG--------DGSHVVWTFHFEKVHKDIDDPHSI----  102 (120)
T ss_dssp             TCEEEEEEEETTTTEEEEEEECTTGGGTEEEEEEEEEEEECSSS--------SCEEEEEEEEEEESSTTSCCSHHH----
T ss_pred             ccEEEEEEEcCCCCEEEEEEEeeccccceeEEEEEEEEEecCCC--------CceEEEEEEEEEeCCCCCCCHHHH----
Confidence            5699999999999999999999996  68999999999999863        489999999999875433  3333    


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 041543          162 DLGLQRMAKTMEDAIVQ  178 (179)
Q Consensus       162 ~~gl~~m~~~le~~l~~  178 (179)
                      ...+..|.+.|++||++
T Consensus       103 ~e~~~~~~K~id~yLL~  119 (120)
T d1vjha_         103 IDESVKYFKKLDEAILN  119 (120)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            44556799999999975


No 12 
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}
Probab=99.50  E-value=3.2e-13  Score=97.36  Aligned_cols=139  Identities=10%  Similarity=0.085  Sum_probs=83.2

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL   91 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L   91 (179)
                      .-|++| +||+++||++|+|+.++++|+|.+.++....+..+..+..+.....     ..             .......
T Consensus         6 e~si~I-~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------------~~~~~~~   66 (147)
T d2ns9a1           6 EGSFEV-SKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIELRLSLGPLR-----GD-------------ARVRASF   66 (147)
T ss_dssp             EEEEEE-SSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEEEEEEEEESSSSE-----EE-------------EEEEEEE
T ss_pred             EEEEEE-cCCHHHHHHHHhCHhhhhhcccchhheeecccccceeEEEEEEEEe-----eE-------------eeeeeee
Confidence            457888 9999999999999999999999998776533211111111111110     01             1334445


Q ss_pred             EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC---CCCcHHHHHHHHHHHHHHH
Q 041543           92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV---EGLVLADLLQKYDLGLQRM  168 (179)
Q Consensus        92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~---~g~~~~~~~~~~~~gl~~m  168 (179)
                      ...++..+...+...........+..++++.+.+          ++|.++|+++++..   .......+...++..++.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~  136 (147)
T d2ns9a1          67 EDLEKPSKATVKGSGRGAGSTLDFTLRFAVEPSG----------GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDV  136 (147)
T ss_dssp             EEEETTTEEEEEEEEECSSEEEEEEEEEEEEEET----------TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHH
T ss_pred             eeecCCcceeEEEeeeccccceeeEEEEEEEecC----------CCcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHH
Confidence            5555554444444343445567889999999987          48999999888743   1222222334444444444


Q ss_pred             HHHHHHHhhcC
Q 041543          169 AKTMEDAIVQA  179 (179)
Q Consensus       169 ~~~le~~l~~~  179 (179)
                      .+.|.+.|.+|
T Consensus       137 l~~lk~~~~~A  147 (147)
T d2ns9a1         137 ISGVKRELGEA  147 (147)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHhcC
Confidence            44454444443


No 13 
>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=99.19  E-value=1.4e-10  Score=85.71  Aligned_cols=122  Identities=11%  Similarity=0.133  Sum_probs=83.3

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL   91 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L   91 (179)
                      .++++| ++|+++||.+++||.++++|+|++.+++...+     +..+....   |  .|              ..+-++
T Consensus         8 ~~~i~I-~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~~~-----~~~~~~~~---~--~G--------------~~~~~i   62 (133)
T d2qpva1           8 IIHLSV-EKPWAEVYDFAANPGNMPRWAAGLAGGLEADG-----EDWIAKGG---P--LG--------------EVRVNF   62 (133)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCGGGGGGTCGGGTTCCEEET-----TEEEEECS---S--SC--------------EEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHHhChhhcchhhhccceeEEecC-----CcEEEEec---C--CC--------------cEEEEE
Confidence            578999 99999999999999999999999988766544     23343333   2  23              445567


Q ss_pred             EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHH---HHHHHHHHHHH
Q 041543           92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADL---LQKYDLGLQRM  168 (179)
Q Consensus        92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~---~~~~~~gl~~m  168 (179)
                      ++. ...+.|.|++..++..  ....++++.+.+          .+|.+.++.. .|. +.....+   ...++..|.+|
T Consensus        63 ~~~-~p~~~i~w~~~~~~~~--~g~v~fr~~~~g----------~gt~v~~~~~-~pp-g~~~~~~~~~~~~v~~dL~rl  127 (133)
T d2qpva1          63 APH-NEFGVIDHVVTLPDGL--KVYNALRVTPNG----------SGTEVSFTLL-RLE-GMTDEDFEQDASAITADLEML  127 (133)
T ss_dssp             CCC-CSSCBCCEEEECTTSC--EEEEEEEEEEET----------TEEEEEEEEE-CCT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEc-CCCCEEEEEEecCCCC--EEEEEEEEccCC----------CeEEEEEEEE-eCC-CCchHHHHHHHHHHHHHHHHH
Confidence            664 4578899998865432  233567777766          4799988864 443 3343333   34567777777


Q ss_pred             HHHHH
Q 041543          169 AKTME  173 (179)
Q Consensus       169 ~~~le  173 (179)
                      ++.+|
T Consensus       128 K~l~E  132 (133)
T d2qpva1         128 KSLLE  132 (133)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77665


No 14 
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}
Probab=99.15  E-value=6.1e-10  Score=81.00  Aligned_cols=141  Identities=11%  Similarity=0.132  Sum_probs=86.6

Q ss_pred             eEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543           10 EGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE   89 (179)
Q Consensus        10 ~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E   89 (179)
                      |+.-+.+| ++|+|+||++|.|+.++++++|++.+.+.... +...+.++...+. +.   +           .. ..+.
T Consensus         2 n~s~~~~i-~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~-~~~~~~~~~~~g~-~~---~-----------~~-~~~~   63 (147)
T d2pcsa1           2 NGNGSIEL-KGTVEEVWSKLMDPSILSKCIMGCKSLELIGE-DKYKADLQIGIAA-VK---G-----------KY-DAII   63 (147)
T ss_dssp             EEEEEEEE-ESCHHHHHHHHTCHHHHHHHSTTEEEEEEEET-TEEEEEEEECCGG-GC---E-----------EE-EEEE
T ss_pred             CCCceEEe-CCCHHHHHHHHcCHHHHHhhCcchhhceecCC-CEEEEEEEEeecc-ee---e-----------ee-EEEE
Confidence            56778899 99999999999999999999999987766543 2223334432221 10   1           01 3455


Q ss_pred             EEEEEecCCcEEEEEEEe-cccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC---CCCcHHHHHHHHHHHH
Q 041543           90 RLVTVDHVQRCLIYEMVD-GNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV---EGLVLADLLQKYDLGL  165 (179)
Q Consensus        90 ~L~~~D~~~r~~~Y~~~~-~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~---~g~~~~~~~~~~~~gl  165 (179)
                      ++...+...+ ....... ...+.....+...+.+.++         ++|+|+|+++++..   ......-+....+..+
T Consensus        64 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~T~v~~~~~~~~~g~l~~l~~~li~~~~~~~~  133 (147)
T d2pcsa1          64 EVTDIKPPYH-YKLLVNGEGGPGFVNAEGVIDLTPIND---------ECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLI  133 (147)
T ss_dssp             EEEEEETTTE-EEEEEEEEETTEEEEEEEEEEEEESSS---------SEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHH
T ss_pred             EEeccCcccc-eeEeeccccccchhcceeEEeeecccC---------CcEEEEEEEEEEECcHHHHHHHHHHHHHHHHHH
Confidence            6777776544 3443333 3345556667777777776         79999999877742   1122222334445555


Q ss_pred             HHHHHHHHHHhhc
Q 041543          166 QRMAKTMEDAIVQ  178 (179)
Q Consensus       166 ~~m~~~le~~l~~  178 (179)
                      +...+++++.|.+
T Consensus       134 ~~f~~~~~~~l~~  146 (147)
T d2pcsa1         134 SDFFKKIQKEIAK  146 (147)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            5555555555544


No 15 
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}
Probab=98.96  E-value=6.8e-09  Score=77.61  Aligned_cols=139  Identities=9%  Similarity=-0.020  Sum_probs=85.8

Q ss_pred             EEEEEEecCCChhhHhHHhhCCCCccccccc-eeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543           11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHS-LATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE   89 (179)
Q Consensus        11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~-i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E   89 (179)
                      =.++.+| +||+++||+++.|...+.+|++. --++.....+....|..++....  |  +|.           .....-
T Consensus        14 i~i~r~i-~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~--~--~g~-----------~~~~~g   77 (163)
T d1xuva_          14 IIITREF-DAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKD--P--EGN-----------EYAFHG   77 (163)
T ss_dssp             EEEEEEE-SSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEEC--T--TSC-----------EEEEEE
T ss_pred             EEEEEEe-CCCHHHHHHHHcChHHhhhccCCCCccceeeeeeceeCceEEEEEEe--c--CCC-----------ceEEEE
Confidence            3678899 99999999999999999999752 22333333332233445544321  2  443           125677


Q ss_pred             EEEEEecCCcEEEEEEEeccc--ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHH-HHHHHHHHHH
Q 041543           90 RLVTVDHVQRCLIYEMVDGNI--GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLAD-LLQKYDLGLQ  166 (179)
Q Consensus        90 ~L~~~D~~~r~~~Y~~~~~~~--~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~-~~~~~~~gl~  166 (179)
                      +++++++. ++|+|+......  .-.....++++.+.++         ++|+++++..+....  ..+. +...+..|.+
T Consensus        78 ~v~~i~~~-~rl~~tw~~~~~~~~~~~~~v~~~~e~~~~---------g~t~~~~~~~~~~~~--~~~~~~~~g~~~GW~  145 (163)
T d1xuva_          78 VNHDVTEP-ERIISTFEFEGLPEKGHVILDTARFEALPG---------DRTKLTSHSVFQTIE--DRDGMLQSGMEEGIN  145 (163)
T ss_dssp             EEEEEETT-TEEEEEEEETTSSSSCCCEEEEEEEEEETT---------TEEEEEEEEECSSHH--HHHHHHHTTHHHHHH
T ss_pred             EEEEecCC-CEEEEEEeccCCCCCCCcEEEEEEEEEeCC---------CcEEEEEEEcCCCHH--HHHHHHHHHHHHHHH
Confidence            89999996 558887654332  2335678999999886         678898887665421  1111 1223445555


Q ss_pred             HHHHHHHHHhh
Q 041543          167 RMAKTMEDAIV  177 (179)
Q Consensus       167 ~m~~~le~~l~  177 (179)
                      .+..+|+++|.
T Consensus       146 ~~L~~L~~~le  156 (163)
T d1xuva_         146 DSYERLDELLE  156 (163)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555543


No 16 
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}
Probab=98.94  E-value=8.8e-09  Score=76.17  Aligned_cols=135  Identities=18%  Similarity=0.170  Sum_probs=84.8

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCC-CCCCcE--EEEeecccccCCCCCCCCCCCCCCCCCceeE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGT-NGEPDC--IRYCAGFSIPSRAASSSTDDNPPPAACSWSK   88 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~-~g~~G~--vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~   88 (179)
                      +++.+| .+|+++||+++.|+.++++|+|.+.+++..... ++....  .+...+.     .+.           .....
T Consensus         5 ~~~~vi-~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~   67 (148)
T d1t17a_           5 VVTKVL-PYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGF-----SFL-----------REKFA   67 (148)
T ss_dssp             EEEEEE-SSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECST-----TSS-----------CCEEE
T ss_pred             eEEEEe-CCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEe-----eee-----------EEEEE
Confidence            577889 999999999999999999999999887654432 222121  2221111     111           11222


Q ss_pred             EEEEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHH
Q 041543           89 ERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRM  168 (179)
Q Consensus        89 E~L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m  168 (179)
                      .+ .......+.+.....+  .++....+..++.|.+          ++|.|+|..+++-........+..+++...+.|
T Consensus        68 ~~-~~~~~~~~~~~~~~~~--g~f~~l~~~W~f~~~~----------~~T~V~~~l~fe~~~~l~~~~~~~~~~~~~~~~  134 (148)
T d1t17a_          68 TR-VRRDKDARSIDVSLLY--GPFKRLNNGWRFMPEG----------DATRVEFVIEFAFKSALLDAMLAANVDRAAGKL  134 (148)
T ss_dssp             EE-EEEETTTCEEEEEESS--TTSSCEEEEEEEEEET----------TEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             EE-eeecCCceEEEEeccC--chhhhcccceeeccCC----------CceEEEEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence            22 3345556666555444  3556778999999976          479999999998543222233335566666666


Q ss_pred             HHHHHHHh
Q 041543          169 AKTMEDAI  176 (179)
Q Consensus       169 ~~~le~~l  176 (179)
                      .+.+++-+
T Consensus       135 i~aF~~Ra  142 (148)
T d1t17a_         135 IACFEARA  142 (148)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543


No 17 
>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}
Probab=98.83  E-value=7.6e-08  Score=71.87  Aligned_cols=142  Identities=8%  Similarity=0.040  Sum_probs=87.5

Q ss_pred             EEEEEEecCCChhhHhHHhhCCCCccccccce-eEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543           11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHSL-ATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE   89 (179)
Q Consensus        11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~i-~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E   89 (179)
                      =+++.+| +||+++||++++|...+.+|.+.- -.+.....+...-|..|.....  +  +|.           ...+.-
T Consensus         9 i~ier~i-~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~--~--~g~-----------~~~~~g   72 (164)
T d2il5a1           9 VEIEKLY-KFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQ--R--NGK-----------VNVIEG   72 (164)
T ss_dssp             EEEEEEE-SSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEEC--G--GGC-----------EEEEEE
T ss_pred             EEEEEEE-CCCHHHHHHHHcCHHHHhCcccCCCccceEEEeecccCceEEEEEec--C--Ccc-----------eEEEEE
Confidence            3577889 999999999999999999986521 1222223322222455554321  1  232           125677


Q ss_pred             EEEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCC--CCcHH-------HHHHH
Q 041543           90 RLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVE--GLVLA-------DLLQK  160 (179)
Q Consensus        90 ~L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~--g~~~~-------~~~~~  160 (179)
                      +++++++. ++|+|+......+-.....++.+.+..+         ++|+++++.+.-+..  .....       .....
T Consensus        73 ~v~e~~p~-~~i~~t~~~~~~~~~~~~~~~~~~e~~~---------ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (164)
T d2il5a1          73 IYESLVMD-EYVKMTIGMPGLSETQDVIEVEFFERET---------GGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDA  142 (164)
T ss_dssp             EEEEEETT-TEEEEEESCC--CCCCEEEEEEEEECSS---------SSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCC-CEEEEEEeccCCCCCceEEEEEEEEcCC---------CCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHH
Confidence            89999985 6688876433333333456677767665         799999997665432  22222       12234


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 041543          161 YDLGLQRMAKTMEDAIVQ  178 (179)
Q Consensus       161 ~~~gl~~m~~~le~~l~~  178 (179)
                      +..|...+..+|++.|.+
T Consensus       143 ~~~Gw~~~l~~L~~~lE~  160 (164)
T d2il5a1         143 MVHGFELMFDKMYHVIET  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            567778888888887765


No 18 
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}
Probab=98.61  E-value=5.4e-07  Score=67.11  Aligned_cols=139  Identities=9%  Similarity=0.032  Sum_probs=82.0

Q ss_pred             eEEEEEEecCCChhhHhHHhhCCCCcccccc-ceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeE
Q 041543           10 EGKVSTRVSRATADQIWPLFTDFFNIHKYFH-SLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSK   88 (179)
Q Consensus        10 ~g~vs~~i~~apae~VW~~l~df~~l~~w~p-~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~   88 (179)
                      +=.++.+| +||+++||.+++|...+.+|+. .--.+....++...-|..+.....  |  +|.           .....
T Consensus         6 ~l~i~r~i-~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~--~--~g~-----------~~~~~   69 (165)
T d1xfsa_           6 DLMLKREL-AVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQD--P--EGN-----------KFPNS   69 (165)
T ss_dssp             EEEEEEEE-SSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEEC--T--TCC-----------EEEEE
T ss_pred             EEEEEEEE-cCCHHHHHHHHcCHHHHhhcCCCCCccceeecccceeCceEEEEEEC--C--CCc-----------eeeEE
Confidence            34688999 9999999999999999999963 212333333432223455554321  2  443           12456


Q ss_pred             EEEEEEecCCcEEEEEEEec--------------ccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcH
Q 041543           89 ERLVTVDHVQRCLIYEMVDG--------------NIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVL  154 (179)
Q Consensus        89 E~L~~~D~~~r~~~Y~~~~~--------------~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~  154 (179)
                      -+++++++. ++|.|+....              ..+......++++.+.+          ++|+|+.+....+..  ..
T Consensus        70 g~v~ei~p~-~rl~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----------~gT~lt~~~~~~~~~--~~  136 (165)
T d1xfsa_          70 GCFLEVTDE-KRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTS----------SGTRYTACAMHNTPG--QR  136 (165)
T ss_dssp             EEEEEEETT-TEEEEESSEEGGGEECCC-----------CCEEEEEEEECS----------SSEEEEEEEECSSHH--HH
T ss_pred             EEEEEecCC-cEEEEEEeecccccccccccccccCCCCccEEEEEEEEEcC----------CcEEEEEEEEcCCHH--HH
Confidence            689999985 6688864321              11222346789999877          489999886543321  12


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHhh
Q 041543          155 ADLLQ-KYDLGLQRMAKTMEDAIV  177 (179)
Q Consensus       155 ~~~~~-~~~~gl~~m~~~le~~l~  177 (179)
                      +.... -+..|.+.+-.+|++.|.
T Consensus       137 ~~~~~~g~~~GW~~~l~~L~~~le  160 (165)
T d1xfsa_         137 KLHEEMGFHEGWGTTITQLEELLK  160 (165)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111 144555566666666654


No 19 
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}
Probab=98.61  E-value=1e-06  Score=63.86  Aligned_cols=134  Identities=11%  Similarity=0.105  Sum_probs=79.2

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCcccccc-ceeEEEeecCCCCCCc-EEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFH-SLATSYGVHGTNGEPD-CIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE   89 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p-~i~~~~~~~G~~g~~G-~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E   89 (179)
                      +++.+| +||+++||++++|...+.+|++ .-..+....++ ..+| ..|..... .+  +|.           ...+.=
T Consensus         5 ~~~r~i-~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d-~~~Gg~~~~~~~~-~~--~g~-----------~~~~~g   68 (143)
T d1z94a1           5 RLHRVL-SAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHD-ARVGGAYKMEFLA-FA--SGQ-----------KHAFGG   68 (143)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEEC-CSTTCEEEEEEEE-TT--TCC-----------EEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHhcCHHHHhhhhCCCCccceeEeec-cccceeEEEEEee-CC--CCc-----------EEEEEE
Confidence            578899 9999999999999999999964 22333333443 2333 55654331 12  332           124556


Q ss_pred             EEEEEecCCcEEEEEEEecccce-eeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHHHHH
Q 041543           90 RLVTVDHVQRCLIYEMVDGNIGF-KSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRM  168 (179)
Q Consensus        90 ~L~~~D~~~r~~~Y~~~~~~~~~-~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl~~m  168 (179)
                      +++++++. ++|.|+........ .....+++|.+.++          +|+++-+.+.-+. ......+..-....|+.|
T Consensus        69 ~v~~~~p~-~~i~~t~~~~~~~~~~~~~v~~~l~~~~~----------gT~lt~~~~~~~~-~~~~~~~~~GW~~~l~~L  136 (143)
T d1z94a1          69 RYLELVPG-ERIRYTDRFDDAGLPGDMITTITLAPLSC----------GADLSIVQEGIPD-AIPPENCYLGWQQSLKQL  136 (143)
T ss_dssp             EEEEEETT-TEEEEEEEESCCC---CEEEEEEEEEETT----------EEEEEEEEECCCT-TSCHHHHHHHHHHHHHHH
T ss_pred             EEEEecCC-eEEEEEEeccCCCCCCcEEEEEEEEEcCC----------CEEEEEEEEcCCC-hhHHHHHHHHHHHHHHHH
Confidence            89999995 55888865433222 34567899999884          7988766443222 223333333334444444


Q ss_pred             HHHHH
Q 041543          169 AKTME  173 (179)
Q Consensus       169 ~~~le  173 (179)
                      ++.||
T Consensus       137 ~~~lE  141 (143)
T d1z94a1         137 AALVE  141 (143)
T ss_dssp             HHHHS
T ss_pred             HHHHc
Confidence            44443


No 20 
>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}
Probab=98.52  E-value=1.5e-06  Score=65.82  Aligned_cols=119  Identities=12%  Similarity=0.145  Sum_probs=76.1

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL   91 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L   91 (179)
                      ++++.| +||+++||++|+|...+.+|++....-..     ...|.++....      ++              ...-++
T Consensus        15 ~~er~i-~ap~e~Vw~AlTdpe~l~~W~~~~~~~d~-----~~GG~~~~~~~------~~--------------~~~~~v   68 (160)
T d2nn5a1          15 GTERAI-SASPQTIWRYLTETDKLKQWFPELEIGEL-----GVNGFWRFILP------DF--------------EETMPF   68 (160)
T ss_dssp             EEEEEE-SSCHHHHHHHHHCHHHHHHHCTTEEEEEC-----STTCEEEEEET------TE--------------EEEEEE
T ss_pred             EEEEEe-cCCHHHHHHHHcCHHHHHhhCCCCCcccc-----cCCCeeEEEcC------CC--------------CcceEE
Confidence            457789 99999999999999999999986533222     12256765432      22              234468


Q ss_pred             EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCC-CCCcHHHHHHHHHHHHHHHHH
Q 041543           92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPV-EGLVLADLLQKYDLGLQRMAK  170 (179)
Q Consensus        92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~-~g~~~~~~~~~~~~gl~~m~~  170 (179)
                      +++++ .|+|.|+-.+       -..+++|.|.++         ++|+++-+-...+. .........+ -...|+.|++
T Consensus        69 ~~~ep-p~rL~~tW~~-------~~v~~eL~~~~~---------~~t~l~l~~~~~~~~~~~~~~~~~G-W~~~Ld~L~~  130 (160)
T d2nn5a1          69 TDYAE-EKYLGVTWDT-------GIIYFDLKEQAP---------HQTLLVFSESLPENFTTPRHKDIAG-WSIVLNRLKQ  130 (160)
T ss_dssp             EEEET-TTEEEEEETT-------EEEEEEEEEEET---------TEEEEEEEEEECTTCSSCHHHHHHH-HHHHHHHHHH
T ss_pred             EEEec-CCEEEEEecC-------ceEEEEEecCCC---------CeEEEEEEEecCccccchhhhhHHH-HHHHHHHHHH
Confidence            89998 5779998632       257889988766         68998877555432 1222221112 3444555665


Q ss_pred             HHHH
Q 041543          171 TMED  174 (179)
Q Consensus       171 ~le~  174 (179)
                      .||.
T Consensus       131 ~leg  134 (160)
T d2nn5a1         131 VVET  134 (160)
T ss_dssp             HHHC
T ss_pred             HHcC
Confidence            5543


No 21 
>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=98.35  E-value=5.5e-06  Score=59.69  Aligned_cols=133  Identities=5%  Similarity=-0.035  Sum_probs=77.0

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCcccccc-ceeEEEee--cCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFH-SLATSYGV--HGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSK   88 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p-~i~~~~~~--~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~   88 (179)
                      +++.+| +||+++||++++|...+.+|+. .-..+...  ..+...-|..++....  +  +|.           ...+.
T Consensus         4 ~i~r~i-~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~--~--~g~-----------~~~~~   67 (143)
T d3elia1           4 RLEREF-AVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVN--G--EGQ-----------RYKVS   67 (143)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEEC--T--TCC-----------EEEEE
T ss_pred             EEEEEE-CCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEEeeccCccEEEEEEC--C--CCc-----------EEEEE
Confidence            578899 9999999999999999999974 21122111  1111122344444321  1  342           12456


Q ss_pred             EEEEEEecCCcEEEEEE--Eecccc-eeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHHHHHHHHH
Q 041543           89 ERLVTVDHVQRCLIYEM--VDGNIG-FKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGL  165 (179)
Q Consensus        89 E~L~~~D~~~r~~~Y~~--~~~~~~-~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~~~~~~gl  165 (179)
                      -+++++++. ++|.|+.  .+.+.. -..-..++++.|.+          ++|+++.+..  ..   ...........|.
T Consensus        68 g~v~~~~p~-~rl~~t~~~~~~~~~~~~~~~vt~~l~~~~----------~gT~l~~~~~--~~---~~~~~~~~~~~GW  131 (143)
T d3elia1          68 GQVTHVKPP-QSVGFTWGWHDDDDRRGAESHVMFIVEPCA----------KGARLILDHR--EL---GDDEMSLRHEEGW  131 (143)
T ss_dssp             EEEEEEETT-TEEEEEEEEECTTSCEEEEEEEEEECCBC------------CEEEEEEEE--SC---SCHHHHHHHHHHH
T ss_pred             EEEEEcCCC-CEEEEEEeecCCCCCCCCcEEEEEEEEEcC----------CCEEEEEEEE--cC---CCHHHHHHHHHHH
Confidence            689999996 5566654  332221 12345677777776          4799977643  22   1122334456677


Q ss_pred             HHHHHHHHHHh
Q 041543          166 QRMAKTMEDAI  176 (179)
Q Consensus       166 ~~m~~~le~~l  176 (179)
                      +.+-.+|++.|
T Consensus       132 ~~~L~~L~~~l  142 (143)
T d3elia1         132 TSSLRKLAAEL  142 (143)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777777766


No 22 
>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}
Probab=98.35  E-value=6e-06  Score=60.48  Aligned_cols=123  Identities=11%  Similarity=0.128  Sum_probs=76.3

Q ss_pred             EEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCc-EEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543           11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPD-CIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE   89 (179)
Q Consensus        11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G-~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E   89 (179)
                      =+.++.| +||+++||++|+|...+.+|++.   |..    ...+| .++. .+   +  +|.              ..=
T Consensus        10 i~~~~~i-~ap~e~Vw~alTdp~~l~~W~~~---~~~----~~~~G~~~~~-~~---~--~g~--------------~~g   61 (143)
T d1xn6a_          10 IKQTIVF-NASIQKVWSVVSTAEGIASWFMP---NDF----VLEVGHEFHV-QS---P--FGP--------------SPC   61 (143)
T ss_dssp             EEEEEEE-SSCHHHHHHTTSCSHHHHTTSCC---BCC----CCCTTCEECB-CC---T--TCC--------------CCE
T ss_pred             EEEEEEE-CCCHHHHHHHhcChHHhceEeec---cCc----ccccCceEEE-ec---c--ccc--------------eeE
Confidence            4678899 99999999999999999999863   221    11223 3322 11   1  332              234


Q ss_pred             EEEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEE-EcCCC------CCcHHHHHHHHH
Q 041543           90 RLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFT-VDPVE------GLVLADLLQKYD  162 (179)
Q Consensus        90 ~L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~-~~p~~------g~~~~~~~~~~~  162 (179)
                      +++++++. ++|.|+.-..     +...+++|.+.++         |+|+|+.+-. +.+..      ..........+.
T Consensus        62 ~v~~~~p~-~~l~~tw~~~-----~~~v~~~l~~~~~---------G~T~l~l~h~g~~~~~~~~~~~~~~~~~~~~~~~  126 (143)
T d1xn6a_          62 KVLEIDEP-NHLSFSWDTD-----GWVVSFDLKDLGD---------NKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMS  126 (143)
T ss_dssp             EEEEEETT-TEEEEEETTT-----TEEEEEEEEEEET---------TEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHH
T ss_pred             EEEEEeCC-cEEEEEEcCC-----CcEEEEEEEEcCC---------CcEEEEEEEeCCCCchhhhhhcchhhHHHHHHHh
Confidence            68889985 6799985322     2568899999876         6899987633 22221      223344445566


Q ss_pred             HHHHHHH-HHHHHHh
Q 041543          163 LGLQRMA-KTMEDAI  176 (179)
Q Consensus       163 ~gl~~m~-~~le~~l  176 (179)
                      .|-..+. +.|.++|
T Consensus       127 ~GW~~~l~~~Lk~~l  141 (143)
T d1xn6a_         127 GGWVAIVNEKLKKVV  141 (143)
T ss_dssp             HHHHHHHTTHHHHHH
T ss_pred             hCHHHHHHHHHHHHh
Confidence            6654433 4555554


No 23 
>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}
Probab=98.29  E-value=4.3e-06  Score=60.24  Aligned_cols=92  Identities=13%  Similarity=0.144  Sum_probs=63.8

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL   91 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L   91 (179)
                      +.++.| +||+++||++++|...+.+|++...      . ...+|..=...+   +  ++              ...=++
T Consensus         8 ~~~~~i-~ap~e~Vw~alt~p~~~~~W~~~~~------~-~~~~g~~~~~~~---~--~~--------------~~~g~v   60 (138)
T d1xn5a_           8 KKEVRF-NAPIEKVWEAVSTSEGLAFWFMEND------L-KAETGHHFHLQS---P--FG--------------PSPCQV   60 (138)
T ss_dssp             EEEEEE-SSCHHHHHHHTTSHHHHHTTSCCBC------C-CSCTTCEEEEEC---S--SC--------------EEEEEE
T ss_pred             EEEEEE-CCCHHHHHHHHcCHHHhceEccCCc------c-cccceeeEEecC---C--cc--------------ceeEEE
Confidence            678999 9999999999999999999987431      1 112332211222   1  22              345578


Q ss_pred             EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEE
Q 041543           92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTV  146 (179)
Q Consensus        92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~  146 (179)
                      +++++. ++|.|+....     +...+++|.|.+          ++|+|+.+.+-
T Consensus        61 ~~~~~~-~~l~~~~~~~-----~~~v~~~l~~~~----------~gT~lt~~~~g   99 (138)
T d1xn5a_          61 TDVERP-IKLSFTWDTD-----GWSVTFHLKEEE----------NGTIFTIVHSG   99 (138)
T ss_dssp             EEEETT-TEEEEEETTT-----TEEEEEEEEECS----------SSEEEEEEEEC
T ss_pred             EEEeCC-cEEEEEecCC-----CeEEEEEEEEcC----------CcEEEEEEEec
Confidence            999985 6799986432     357889999977          48999987543


No 24 
>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}
Probab=98.12  E-value=8.9e-06  Score=59.62  Aligned_cols=103  Identities=12%  Similarity=0.079  Sum_probs=61.7

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccc-eeEEEee--cCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHS-LATSYGV--HGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSK   88 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~-i~~~~~~--~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~   88 (179)
                      +.+++| +||+++||++++|  .+.+|.+. ...+...  ..+.+.-|..+...    |  +|.           . .+.
T Consensus         7 ~~~~~i-~Ap~e~Vf~a~te--~~~~Ww~~~~~~~~~~~~~~~~~~gG~~~~~~----~--dG~-----------~-~~~   65 (155)
T d1zxfa1           7 RHSVTV-KADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVDKKGGRWYEID----E--QGE-----------E-HTF   65 (155)
T ss_dssp             EEEEEE-SSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEETTTTEEECCC----T--TTS-----------C-CCC
T ss_pred             EEEEEE-eCCHHHHHHHHHh--hhHhhcCCCCCCceEEEEEEeeCCCceEEEEc----c--ccc-----------e-eee
Confidence            678999 9999999999996  47788642 2111110  11112234443322    2  443           1 233


Q ss_pred             EEEEEEecCCcEEEEEEEeccc----ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEE
Q 041543           89 ERLVTVDHVQRCLIYEMVDGNI----GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFT  145 (179)
Q Consensus        89 E~L~~~D~~~r~~~Y~~~~~~~----~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~  145 (179)
                      =+++++++. ++|.|+-.....    +-.....++.+++.++         ++|+|+-+-+
T Consensus        66 g~v~ei~p~-~rl~~tw~~~~~~~~~~~~~s~v~~~~~~~~~---------~~T~ltl~h~  116 (155)
T d1zxfa1          66 GLIRKVDEP-DTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQ---------KKTRVDVEHT  116 (155)
T ss_dssp             EEEEEEETT-TEEEEECCCSSSSSCCCSSCCCEEEEEEEETT---------TEEEEEEEEC
T ss_pred             EEEEEEecC-cEEEEEEecCCccccccccceEEEEEEEecCC---------CCEEEEEEEe
Confidence            468899985 668887543221    1224568888888876         6898887643


No 25 
>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}
Probab=97.85  E-value=0.00016  Score=54.59  Aligned_cols=111  Identities=8%  Similarity=0.076  Sum_probs=65.8

Q ss_pred             EEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCC-cEEEEeecccccCCCCCCC--CCCCCCCCCCcee
Q 041543           11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEP-DCIRYCAGFSIPSRAASSS--TDDNPPPAACSWS   87 (179)
Q Consensus        11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~-G~vR~~~~~~~p~~~g~~~--~~~~~~~~~~~~~   87 (179)
                      =+.+.+| +||+++||++|+|...+.+|+... .     . +-.+ |.++.....  +  ++...  .....+......+
T Consensus        21 l~~er~~-~Ap~e~VW~AlTdpe~l~~W~~p~-~-----~-d~~~Gg~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~   88 (183)
T d2k5ga1          21 IRFERLL-PGPIERVWAWLADADKRARWLAGG-E-----L-PRQPGQTFELHFNH--A--ALTAETAPARYAQYDRPIVA   88 (183)
T ss_dssp             EEEEEEE-SSSSHHHHHHHHCHHHHTTTSCCC-C-----C-CSSTTCEEEEEECG--G--GSCCSSCCSSCSGGGSCEEE
T ss_pred             EEEEEEe-CCCHHHHHHHHhChHHHhhhcCCC-C-----c-cccCCCEEEEEecC--C--CCcccccccccccCCCceeE
Confidence            4678889 999999999999999999997532 1     1 1122 344443321  0  11000  0000000111245


Q ss_pred             EEEEEEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEE
Q 041543           88 KERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFT  145 (179)
Q Consensus        88 ~E~L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~  145 (179)
                      .=+++++++. ++|.|+....... ..-..+++|.+.+          ++|+++-+.+
T Consensus        89 ~g~v~~~~p~-~rl~~tw~~~~~~-~~s~v~~~l~~~g----------~gT~ltl~~~  134 (183)
T d2k5ga1          89 RHTLLRCEPP-RVLALTWGGGAGE-APSEVLFELSEAG----------EQVRLVLTHT  134 (183)
T ss_dssp             EEEEEEEETT-TEEEEECCCCSSS-SCCEEEEEEEECS----------SSEEEEEEEE
T ss_pred             EEEEEEEeCC-eEEEEEeccCCCC-CcEEEEEEEEEcC----------CcEEEEEEEe
Confidence            6789999984 6799987653322 1235788888887          4798876543


No 26 
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.85  E-value=0.00038  Score=52.42  Aligned_cols=146  Identities=6%  Similarity=-0.073  Sum_probs=84.2

Q ss_pred             EEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543           11 GKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER   90 (179)
Q Consensus        11 g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~   90 (179)
                      =+++.+| ++|+++|+++|.|.....+|.|.+..++.++..+...-.++++....+|.  -.         +.-..+.-+
T Consensus        46 ~r~~~~i-~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~--~v---------~~RD~v~~~  113 (199)
T d1jssa_          46 YKAQGVM-DDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLN--II---------SPREFVDFS  113 (199)
T ss_dssp             EEEEEEE-SSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTT--TB---------CCEEEEEEE
T ss_pred             EEEEEEe-CCCHHHHHHHHhChhhhhhcccchheEEEEEEcCCCcEEEEEEEcccCCC--Cc---------CCcEEEEEE
Confidence            4678888 99999999999999999999999999988764222112244443211110  00         001122223


Q ss_pred             EEEEecCCcEEEEEEEecc------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHH-HHHHHH
Q 041543           91 LVTVDHVQRCLIYEMVDGN------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADL-LQKYDL  163 (179)
Q Consensus        91 L~~~D~~~r~~~Y~~~~~~------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~-~~~~~~  163 (179)
                      -...++....++.......      .....+.+-+.+.|.++++       .+|.|+|.+.++|. |..+.-+ ..++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~-------~~t~vt~~~~~Dp~-G~iP~~lvn~~~~~  185 (199)
T d1jssa_         114 YTVGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSP-------SQSLLTGYIQTDLR-GMIPQSAVDTAMAS  185 (199)
T ss_dssp             EEEEETTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEE-------EEEEEEEEECEECC-SCCCHHHHHHHHHH
T ss_pred             EEEEcCCcEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCC-------CcEEEEEEEEcCCC-CCCcHHHHHHHHHH
Confidence            3333333322222222211      1234566788888986532       47999999999996 4444433 344555


Q ss_pred             HHHHHHHHHHHHh
Q 041543          164 GLQRMAKTMEDAI  176 (179)
Q Consensus       164 gl~~m~~~le~~l  176 (179)
                      .+-...+.|.++|
T Consensus       186 ~~~~~~~~Lr~~l  198 (199)
T d1jssa_         186 TLANFYSDLRKGL  198 (199)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            5555555555544


No 27 
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.78  E-value=0.00052  Score=52.14  Aligned_cols=143  Identities=8%  Similarity=0.050  Sum_probs=84.2

Q ss_pred             EEEEEecCCChhhHhH-HhhCCCCccccccceeEEEeecCCCCCCcEEEEeeccccc--CCCCCCCCCCCCCCCCCceeE
Q 041543           12 KVSTRVSRATADQIWP-LFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIP--SRAASSSTDDNPPPAACSWSK   88 (179)
Q Consensus        12 ~vs~~i~~apae~VW~-~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p--~~~g~~~~~~~~~~~~~~~~~   88 (179)
                      +++.+| ++|+++|.. ++.|+...++|.|.+..++.++--+..-..+.++.....|  -.++             ..+.
T Consensus        55 k~~~~i-~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~R-------------D~v~  120 (214)
T d1em2a_          55 ILKTFL-PCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPR-------------DFVN  120 (214)
T ss_dssp             EEEEEE-SSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCE-------------EEEE
T ss_pred             EEEEEE-eCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcCCCceEEEEEecccCCCCCCCc-------------EEEE
Confidence            778889 999999885 7789999999999999998875322221223333321111  1111             2455


Q ss_pred             EEEEEEecCCcEEEEEEEecc--------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHH-H
Q 041543           89 ERLVTVDHVQRCLIYEMVDGN--------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLL-Q  159 (179)
Q Consensus        89 E~L~~~D~~~r~~~Y~~~~~~--------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~-~  159 (179)
                      -+-...++....+.+..+..+        .....+.+.+.++|.++++       ++|.|+|...++|. |..+.-+. .
T Consensus       121 ~~~~~~~~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~-------~~t~vt~~~~~Dp~-G~iP~~lvn~  192 (214)
T d1em2a_         121 VRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNP-------RVCTFVWILNTDLK-GRLPRYLIHQ  192 (214)
T ss_dssp             EEEEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCT-------TCEEEEEEECEECC-SSSCHHHHHH
T ss_pred             EEEEEEcCCcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCC-------CeEEEEEEEEeCCC-CCCCHHHHHH
Confidence            555555665555555444322        1234566777888876543       68999999999995 44443322 3


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 041543          160 KYDLGLQRMAKTMEDAI  176 (179)
Q Consensus       160 ~~~~gl~~m~~~le~~l  176 (179)
                      .+..++-...+.|.+++
T Consensus       193 ~~~~~~~~~~~~Lrk~~  209 (214)
T d1em2a_         193 SLAATMFEFAFHLRQRI  209 (214)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            33343333444444433


No 28 
>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.69  E-value=5e-05  Score=54.96  Aligned_cols=96  Identities=7%  Similarity=0.056  Sum_probs=59.8

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCC-cEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEP-DCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER   90 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~-G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~   90 (179)
                      .++.++ +||+++||++++|...+.+|...-  +   ..+ ..+ |..+..        +|              .+.=+
T Consensus         7 ~~~r~~-~ap~e~Vw~a~tdpe~l~~W~~~~--~---~~d-~~~Gg~f~~~--------~g--------------~~~G~   57 (132)
T d1x53a1           7 TLKETF-LTSPEELYRVFTTQELVQAFTHAP--A---TLE-ADRGGKFHMV--------DG--------------NVSGE   57 (132)
T ss_dssp             EEEEEE-SSCHHHHHHHTTCHHHHHHHSCSC--C---BCC-CSTTCCCBBT--------TT--------------TEECC
T ss_pred             EEEEEE-CCCHHHHHHHHcCHHHHHhhhCCc--c---ccc-cccCCEEEEE--------ec--------------ceeEE
Confidence            578899 999999999999999999997422  1   121 122 233332        22              23335


Q ss_pred             EEEEecCCcEEEEEE--EecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcC
Q 041543           91 LVTVDHVQRCLIYEM--VDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDP  148 (179)
Q Consensus        91 L~~~D~~~r~~~Y~~--~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p  148 (179)
                      ++++++.+ +|.|+-  .+.+.+. .-..++++.+.+          ++|+++-+.+.-|
T Consensus        58 ~~ev~p~~-rlv~tw~~~~~~~~~-~s~vt~~l~~~~----------~~T~l~l~~~g~p  105 (132)
T d1x53a1          58 FTDLVPEK-HIVMKWRFKSWPEGH-FATITLTFIDKN----------GETELCMEGRGIP  105 (132)
T ss_dssp             EEEEETTT-EEEEEEEETTSCTTC-CEEEEEECCBCS----------SCEEEEEEEEEEE
T ss_pred             EEEEeCCC-EEEEEEecCCCCCCC-cEEEEEEEEECC----------CcEEEEEEEECCC
Confidence            77888865 466553  3322221 234677777765          5899998865434


No 29 
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.45  E-value=0.0023  Score=48.01  Aligned_cols=140  Identities=15%  Similarity=0.174  Sum_probs=77.8

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE-E
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE-R   90 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E-~   90 (179)
                      ++..+|+++|++.++.++.|....++|.|.+.++...... +. .-+......+.|-.++             ..+.- +
T Consensus        48 k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~~~-~~-~i~y~~~~~p~p~~~R-------------D~v~~~~  112 (203)
T d1ln1a_          48 KVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECN-GE-TVVYWEVKYPFPMSNR-------------DYVYLRQ  112 (203)
T ss_dssp             EEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEET-TE-EEEEEEECCCTTSCCE-------------EEEEEEE
T ss_pred             EEEEEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEccC-Cc-EEEEEEcccccccCCc-------------eEEEEEE
Confidence            5667785699999999999999999999998876543322 21 1222222221221111             12222 2


Q ss_pred             EEEEecCCcEEEEEE---Eec-c-------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHHHH-
Q 041543           91 LVTVDHVQRCLIYEM---VDG-N-------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLL-  158 (179)
Q Consensus        91 L~~~D~~~r~~~Y~~---~~~-~-------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~~~-  158 (179)
                      ....++....+...+   ... .       .....+.+.+.++|.++         ++|.+++....+|. |..+.-+. 
T Consensus       113 ~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~---------~~t~v~~~~~~Dp~-G~iP~~lvn  182 (203)
T d1ln1a_         113 RRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGK---------KGSKVFMYYFDNPG-GQIPSWLIN  182 (203)
T ss_dssp             EEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSS---------SSEEEEEEEEECCS-SCCCHHHHH
T ss_pred             EEEccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCC---------CcEEEEEEEEcCCC-CcCHHHHHH
Confidence            222233322222211   111 1       12346778889999876         68999999999995 54444333 


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 041543          159 QKYDLGLQRMAKTMEDAI  176 (179)
Q Consensus       159 ~~~~~gl~~m~~~le~~l  176 (179)
                      .....+.-.+-+.|.+++
T Consensus       183 ~~~~~~~~~~~~~l~k~~  200 (203)
T d1ln1a_         183 WAAKNGVPNFLKDMARAC  200 (203)
T ss_dssp             HHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            233333344444444443


No 30 
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.21  E-value=0.084  Score=39.11  Aligned_cols=133  Identities=13%  Similarity=0.089  Sum_probs=72.9

Q ss_pred             EEEEEecCCChhhHhH-HhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEE
Q 041543           12 KVSTRVSRATADQIWP-LFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKER   90 (179)
Q Consensus        12 ~vs~~i~~apae~VW~-~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~   90 (179)
                      +++.+| ++++++|.. ++.+   .+.|.+.+..++.++--+...--+.+..-.+.|-.++             ..+.-+
T Consensus        47 k~~~~i-~a~~~~vl~~~l~~---r~~Wd~~~~~~~~le~~~~~~~i~y~~~~~p~pvs~R-------------D~v~~~  109 (197)
T d2psoa1          47 KASVEV-EAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQTEIYQYVLNSMAPHPSR-------------DFVVLR  109 (197)
T ss_dssp             EEEEEE-SSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETTEEEEEEEECCSSSCCCE-------------EEEEEE
T ss_pred             EEEEEE-cCCHHHHHHHHHHh---HHHHhhhhheEEEEEEcCCCCEEEEEEccCCCcccce-------------eEEEEE
Confidence            677889 899888864 5554   5789999988877652111111123222211121111             133333


Q ss_pred             EEEEecCC--cEEEEEEEecc-------cceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCC---CCcHHHHH
Q 041543           91 LVTVDHVQ--RCLIYEMVDGN-------IGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVE---GLVLADLL  158 (179)
Q Consensus        91 L~~~D~~~--r~~~Y~~~~~~-------~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~---g~~~~~~~  158 (179)
                      -...+.+.  ..+...-++.+       +....+.+.+.++|.++         ++|.|+|....+|..   .+....+.
T Consensus       110 ~~~~~~~~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~---------~~t~vt~~~~~Dp~G~iP~W~~n~~~  180 (197)
T d2psoa1         110 TWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGS---------GKSRLTHICRIDLKGHSPEWYSKGFG  180 (197)
T ss_dssp             EEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECST---------TCEEEEEEEEECCSSSCTTTTTTHHH
T ss_pred             EEEEeCCCCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECCC---------CcEEEEEEEEECCCCcCchhHHhhhH
Confidence            33444322  33333333332       12356777888899876         689999999999842   23344444


Q ss_pred             HHHHHHHHHHHH
Q 041543          159 QKYDLGLQRMAK  170 (179)
Q Consensus       159 ~~~~~gl~~m~~  170 (179)
                      ..+..-+.+|.+
T Consensus       181 ~~~~~~~~~lr~  192 (197)
T d2psoa1         181 HLCAAEVARIRN  192 (197)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443


No 31 
>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=94.02  E-value=0.74  Score=33.58  Aligned_cols=67  Identities=9%  Similarity=-0.030  Sum_probs=48.0

Q ss_pred             cCCChhhHhHHhh-CCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEEEEEec
Q 041543           18 SRATADQIWPLFT-DFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDH   96 (179)
Q Consensus        18 ~~apae~VW~~l~-df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L~~~D~   96 (179)
                      |..+.+++|.-|- --.+...+.|+|.+|+.+....  -+-.|.+.+      ++.             .++|+++-.-+
T Consensus        18 p~LTr~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~~--~~~~Rel~f------g~~-------------~v~e~Vtl~~~   76 (151)
T d2ffsa1          18 PVLDRLQLWEGLVCRAREPQYFVVGLERFEILVDDG--DRLHRRLYL------PGL-------------VVEDEVVLKAP   76 (151)
T ss_dssp             CCCCHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECS--SEEEEEEEE------TTE-------------EEEEEEEEETT
T ss_pred             CccCHHHHHHHHHHhhcCHhhcccccceEEEEEecC--CeEEEEEEE------CCc-------------eeEEEEEEcCC
Confidence            3557889999883 4555677899999999876432  256898887      222             78898876654


Q ss_pred             CCcEEEEEEEe
Q 041543           97 VQRCLIYEMVD  107 (179)
Q Consensus        97 ~~r~~~Y~~~~  107 (179)
                        ..+.|.+..
T Consensus        77 --~~v~f~~~a   85 (151)
T d2ffsa1          77 --DSAHYSIKP   85 (151)
T ss_dssp             --TEEEEEECC
T ss_pred             --cEEEEEccc
Confidence              567887765


Done!