Query 041545
Match_columns 554
No_of_seqs 170 out of 275
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1837 Uncharacterized conser 100.0 1.4E-51 3.1E-56 469.9 27.2 451 18-554 1092-1545(1621)
2 PF08146 BP28CT: BP28CT (NUC21 100.0 9.6E-38 2.1E-42 290.6 13.5 151 314-490 1-153 (153)
3 KOG2171 Karyopherin (importin) 99.9 1.5E-19 3.2E-24 205.1 36.3 373 14-433 479-897 (1075)
4 KOG2023 Nuclear transport rece 99.8 1.7E-19 3.8E-24 193.6 18.0 311 92-432 368-714 (885)
5 KOG2171 Karyopherin (importin) 99.2 1.7E-08 3.7E-13 116.1 28.4 340 23-432 262-617 (1075)
6 KOG2023 Nuclear transport rece 98.8 4.8E-06 1E-10 91.3 27.8 378 14-510 132-572 (885)
7 KOG1241 Karyopherin (importin) 98.7 1.5E-05 3.2E-10 88.8 29.2 369 19-434 268-693 (859)
8 COG5215 KAP95 Karyopherin (imp 98.5 8.2E-05 1.8E-09 80.7 26.3 322 74-434 320-693 (858)
9 KOG1241 Karyopherin (importin) 98.3 0.00018 3.9E-09 80.4 25.5 194 23-252 514-714 (859)
10 KOG1824 TATA-binding protein-i 98.2 0.0039 8.4E-08 71.5 33.2 272 90-434 185-489 (1233)
11 PF12348 CLASP_N: CLASP N term 97.9 0.0003 6.4E-09 69.5 15.5 105 88-208 16-126 (228)
12 KOG0915 Uncharacterized conser 97.9 0.006 1.3E-07 73.0 27.7 357 22-429 953-1364(1702)
13 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00013 2.8E-09 63.1 9.4 77 95-171 2-79 (97)
14 KOG1824 TATA-binding protein-i 97.6 0.25 5.4E-06 57.4 33.3 123 19-171 183-309 (1233)
15 COG5215 KAP95 Karyopherin (imp 97.6 0.0033 7.1E-08 68.7 17.9 193 97-318 616-817 (858)
16 KOG1991 Nuclear transport rece 97.3 0.41 9E-06 55.9 30.5 279 95-433 478-781 (1010)
17 KOG1242 Protein containing ada 97.3 0.1 2.2E-06 57.9 24.8 134 67-222 208-342 (569)
18 KOG2022 Nuclear transport rece 97.1 0.17 3.6E-06 58.3 25.0 306 92-433 522-850 (982)
19 PF01602 Adaptin_N: Adaptin N 97.1 0.48 1E-05 52.4 28.9 69 352-433 320-389 (526)
20 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0048 1E-07 53.3 9.3 93 136-247 3-95 (97)
21 PF12348 CLASP_N: CLASP N term 97.0 0.059 1.3E-06 53.0 18.2 159 20-222 17-182 (228)
22 KOG1248 Uncharacterized conser 97.0 0.11 2.4E-06 61.5 22.2 255 19-334 663-922 (1176)
23 PTZ00429 beta-adaptin; Provisi 96.9 0.066 1.4E-06 62.1 20.4 100 101-217 238-338 (746)
24 PF08064 UME: UME (NUC010) dom 96.8 0.013 2.9E-07 51.5 10.6 98 70-170 6-106 (107)
25 PF12717 Cnd1: non-SMC mitotic 96.8 0.071 1.5E-06 51.0 16.4 108 93-222 2-110 (178)
26 KOG1242 Protein containing ada 96.7 1.4 3E-05 49.2 27.1 125 76-222 175-300 (569)
27 KOG2956 CLIP-associating prote 96.6 0.035 7.6E-07 59.8 13.6 159 13-220 332-493 (516)
28 PF03378 CAS_CSE1: CAS/CSE pro 96.6 0.42 9E-06 52.3 22.3 317 65-432 15-350 (435)
29 PF01602 Adaptin_N: Adaptin N 96.4 1.8 3.8E-05 47.9 26.2 168 191-405 355-523 (526)
30 KOG0213 Splicing factor 3b, su 96.4 0.21 4.5E-06 56.7 18.1 154 15-222 888-1041(1172)
31 PF14500 MMS19_N: Dos2-interac 96.2 1.1 2.5E-05 45.6 21.7 242 17-328 6-255 (262)
32 PF10274 ParcG: Parkin co-regu 96.2 0.02 4.4E-07 55.0 8.2 91 116-222 35-129 (183)
33 smart00802 UME Domain in UVSB 96.1 0.084 1.8E-06 46.4 10.8 95 70-167 6-103 (107)
34 PF12460 MMS19_C: RNAPII trans 96.0 0.059 1.3E-06 58.5 12.0 125 76-222 272-411 (415)
35 KOG0213 Splicing factor 3b, su 96.0 0.31 6.8E-06 55.3 17.3 158 70-252 794-957 (1172)
36 PF05004 IFRD: Interferon-rela 96.0 0.73 1.6E-05 48.2 19.3 138 67-222 121-278 (309)
37 PF13513 HEAT_EZ: HEAT-like re 96.0 0.0068 1.5E-07 46.1 3.1 54 133-202 1-54 (55)
38 KOG1967 DNA repair/transcripti 95.9 0.11 2.3E-06 60.1 13.6 150 72-243 864-1016(1030)
39 PF03378 CAS_CSE1: CAS/CSE pro 95.8 2.1 4.5E-05 46.9 22.8 181 114-336 21-215 (435)
40 KOG1059 Vesicle coat complex A 95.8 1.2 2.5E-05 50.7 20.4 173 14-222 148-345 (877)
41 KOG1248 Uncharacterized conser 95.4 2.3 5E-05 50.8 21.9 119 89-223 748-875 (1176)
42 PF12460 MMS19_C: RNAPII trans 95.3 0.077 1.7E-06 57.6 9.2 95 70-168 318-414 (415)
43 KOG1992 Nuclear export recepto 95.2 8.4 0.00018 44.8 24.7 99 70-172 493-601 (960)
44 cd00020 ARM Armadillo/beta-cat 95.2 0.067 1.5E-06 46.1 6.9 92 76-171 8-102 (120)
45 PF13513 HEAT_EZ: HEAT-like re 94.9 0.015 3.3E-07 44.1 2.0 54 93-146 1-55 (55)
46 KOG0212 Uncharacterized conser 94.9 3.1 6.8E-05 46.2 20.0 186 17-252 257-447 (675)
47 PF10508 Proteasom_PSMB: Prote 94.9 3.6 7.8E-05 45.9 21.2 194 15-252 124-322 (503)
48 PF10508 Proteasom_PSMB: Prote 94.9 5.2 0.00011 44.7 22.5 144 14-206 164-320 (503)
49 COG5181 HSH155 U2 snRNP splice 94.9 1.2 2.6E-05 49.9 16.6 117 75-222 730-846 (975)
50 PF11865 DUF3385: Domain of un 94.8 0.38 8.3E-06 45.3 11.3 95 75-172 10-140 (160)
51 cd00020 ARM Armadillo/beta-cat 94.6 0.14 3.1E-06 44.0 7.6 105 15-148 12-120 (120)
52 KOG1062 Vesicle coat complex A 94.6 2.1 4.4E-05 49.3 18.2 80 13-126 353-432 (866)
53 PTZ00429 beta-adaptin; Provisi 94.6 12 0.00026 43.8 28.8 148 14-220 36-186 (746)
54 PRK09687 putative lyase; Provi 94.6 2.3 5E-05 43.8 17.4 110 14-169 27-137 (280)
55 PF02985 HEAT: HEAT repeat; I 94.4 0.075 1.6E-06 35.7 4.1 31 120-150 1-31 (31)
56 PF08167 RIX1: rRNA processing 94.3 1.1 2.3E-05 42.5 13.2 131 70-222 20-160 (165)
57 PF08623 TIP120: TATA-binding 94.1 0.76 1.7E-05 43.7 11.8 114 90-209 38-151 (169)
58 PF13646 HEAT_2: HEAT repeats; 94.0 0.34 7.3E-06 39.8 8.2 73 77-171 1-73 (88)
59 PF13646 HEAT_2: HEAT repeats; 93.9 0.32 7E-06 39.9 7.9 83 15-144 4-88 (88)
60 KOG1993 Nuclear transport rece 93.8 17 0.00036 42.3 24.4 140 2-165 513-661 (978)
61 KOG0212 Uncharacterized conser 93.7 4.9 0.00011 44.7 18.3 288 93-434 14-304 (675)
62 PRK09687 putative lyase; Provi 93.7 0.79 1.7E-05 47.2 12.0 97 15-146 59-155 (280)
63 KOG2022 Nuclear transport rece 93.5 3.4 7.3E-05 48.2 17.1 139 93-252 481-623 (982)
64 PF08167 RIX1: rRNA processing 93.4 1.9 4E-05 40.8 13.2 128 14-167 29-162 (165)
65 KOG1993 Nuclear transport rece 93.4 8.8 0.00019 44.5 20.0 127 79-222 530-664 (978)
66 KOG2274 Predicted importin 9 [ 93.3 5.5 0.00012 46.6 18.6 165 20-222 583-755 (1005)
67 KOG0915 Uncharacterized conser 92.6 30 0.00064 43.0 23.8 155 51-228 1207-1367(1702)
68 PF10274 ParcG: Parkin co-regu 92.5 0.65 1.4E-05 44.7 8.6 89 72-166 35-130 (183)
69 PF10521 DUF2454: Protein of u 92.5 2 4.3E-05 44.2 12.9 141 15-171 124-276 (282)
70 KOG2021 Nuclear mRNA export fa 92.2 0.84 1.8E-05 52.1 10.1 74 95-168 662-746 (980)
71 PF04826 Arm_2: Armadillo-like 92.2 2.2 4.8E-05 43.3 12.4 148 16-209 60-209 (254)
72 smart00802 UME Domain in UVSB 91.9 1.6 3.4E-05 38.5 9.5 85 116-221 8-96 (107)
73 COG5181 HSH155 U2 snRNP splice 91.0 5.2 0.00011 45.0 14.3 122 71-212 600-724 (975)
74 PF08064 UME: UME (NUC010) dom 90.9 2 4.3E-05 37.7 9.3 89 116-222 8-101 (107)
75 PF12719 Cnd3: Nuclear condens 90.8 22 0.00048 36.7 20.8 137 89-252 37-181 (298)
76 KOG1240 Protein kinase contain 90.8 2.3 5.1E-05 50.9 12.1 127 71-222 573-701 (1431)
77 PF04388 Hamartin: Hamartin pr 90.2 4.2 9.1E-05 47.0 13.7 149 14-222 8-157 (668)
78 KOG2081 Nuclear transport regu 90.2 28 0.0006 39.0 19.1 213 70-331 335-557 (559)
79 KOG1240 Protein kinase contain 89.8 11 0.00024 45.5 16.4 123 15-161 467-625 (1431)
80 KOG2956 CLIP-associating prote 89.4 7.8 0.00017 42.4 13.8 145 193-375 347-491 (516)
81 KOG2160 Armadillo/beta-catenin 89.2 6.6 0.00014 41.4 12.9 123 17-167 131-259 (342)
82 KOG1020 Sister chromatid cohes 89.1 60 0.0013 40.6 21.9 124 16-145 822-957 (1692)
83 PRK13800 putative oxidoreducta 88.9 3.3 7.1E-05 49.6 11.9 88 14-147 625-712 (897)
84 KOG1991 Nuclear transport rece 88.6 61 0.0013 38.7 23.3 157 18-209 470-631 (1010)
85 PF11865 DUF3385: Domain of un 88.4 6.8 0.00015 36.9 11.4 130 15-150 15-159 (160)
86 COG5656 SXM1 Importin, protein 88.3 57 0.0012 38.0 24.1 108 95-222 476-585 (970)
87 PF13251 DUF4042: Domain of un 88.1 3.4 7.4E-05 39.9 9.3 135 10-151 39-177 (182)
88 PF14500 MMS19_N: Dos2-interac 88.0 26 0.00055 35.8 16.2 79 126-223 6-86 (262)
89 KOG1820 Microtubule-associated 87.6 29 0.00063 41.0 18.0 149 12-209 255-404 (815)
90 cd08050 TAF6 TATA Binding Prot 87.2 5 0.00011 42.6 10.8 118 18-171 186-320 (343)
91 KOG2032 Uncharacterized conser 86.9 11 0.00024 41.5 13.1 104 104-222 239-347 (533)
92 PF12717 Cnd1: non-SMC mitotic 85.4 26 0.00056 33.3 13.8 90 132-250 1-93 (178)
93 PF02985 HEAT: HEAT repeat; I 84.0 2.1 4.5E-05 28.6 4.0 30 76-109 1-30 (31)
94 PF10363 DUF2435: Protein of u 83.7 5 0.00011 34.3 7.2 80 120-216 4-83 (92)
95 KOG1943 Beta-tubulin folding c 83.1 23 0.0005 42.5 14.2 141 72-227 338-480 (1133)
96 PLN03200 cellulose synthase-in 82.9 7.8 0.00017 49.9 11.2 130 14-172 613-747 (2102)
97 KOG2549 Transcription initiati 82.7 54 0.0012 36.7 16.2 156 18-222 215-388 (576)
98 PF04826 Arm_2: Armadillo-like 82.5 40 0.00086 34.3 14.4 125 14-171 16-145 (254)
99 PF07571 DUF1546: Protein of u 82.4 8.2 0.00018 32.9 8.0 70 90-159 17-90 (92)
100 PLN03200 cellulose synthase-in 82.4 47 0.001 43.2 17.6 150 76-252 610-767 (2102)
101 KOG1820 Microtubule-associated 82.2 26 0.00055 41.5 14.4 128 76-221 250-379 (815)
102 PF10521 DUF2454: Protein of u 82.1 64 0.0014 33.1 16.4 134 76-222 120-270 (282)
103 KOG2274 Predicted importin 9 [ 81.6 1.2E+02 0.0027 36.0 25.1 201 89-334 460-666 (1005)
104 KOG1967 DNA repair/transcripti 81.5 5.9 0.00013 46.5 8.7 120 116-252 864-985 (1030)
105 PF12397 U3snoRNP10: U3 small 80.0 9.6 0.00021 33.8 8.0 74 72-150 3-76 (121)
106 KOG2149 Uncharacterized conser 79.5 32 0.0007 37.0 12.8 126 19-172 67-194 (393)
107 PRK13800 putative oxidoreducta 78.7 15 0.00033 44.0 11.5 22 14-35 746-767 (897)
108 KOG2933 Uncharacterized conser 77.7 32 0.00069 36.0 11.7 89 118-222 87-175 (334)
109 PF05918 API5: Apoptosis inhib 77.6 1.3E+02 0.0029 34.1 19.7 253 15-333 64-320 (556)
110 PF03224 V-ATPase_H_N: V-ATPas 76.2 29 0.00062 36.1 11.4 131 15-172 110-251 (312)
111 KOG2081 Nuclear transport regu 75.9 61 0.0013 36.4 14.0 124 75-219 426-551 (559)
112 KOG1077 Vesicle coat complex A 75.5 1.7E+02 0.0036 34.1 19.0 189 12-228 258-456 (938)
113 KOG1059 Vesicle coat complex A 75.3 1.7E+02 0.0037 34.1 17.9 86 75-167 144-229 (877)
114 COG5095 TAF6 Transcription ini 75.1 1.1E+02 0.0024 32.0 15.7 73 131-222 210-282 (450)
115 PF12231 Rif1_N: Rap1-interact 73.4 1.3E+02 0.0029 32.1 28.9 333 19-418 2-362 (372)
116 KOG1060 Vesicle coat complex A 72.7 2E+02 0.0044 33.9 18.6 82 116-220 284-365 (968)
117 KOG1058 Vesicle coat complex C 71.9 49 0.0011 38.5 12.3 122 14-172 321-445 (948)
118 PLN03076 ARF guanine nucleotid 70.8 19 0.00041 46.1 9.8 136 15-169 1352-1511(1780)
119 cd08050 TAF6 TATA Binding Prot 70.4 21 0.00045 37.9 8.8 77 70-146 253-338 (343)
120 PF05004 IFRD: Interferon-rela 69.9 1.5E+02 0.0032 31.0 22.8 177 16-222 49-233 (309)
121 KOG0392 SNF2 family DNA-depend 69.7 12 0.00027 45.4 7.3 97 90-208 827-928 (1549)
122 KOG4653 Uncharacterized conser 68.8 89 0.0019 37.0 13.6 91 80-171 849-941 (982)
123 KOG1062 Vesicle coat complex A 68.3 22 0.00047 41.4 8.7 90 75-172 142-231 (866)
124 KOG2149 Uncharacterized conser 68.2 39 0.00085 36.4 10.1 117 90-222 69-187 (393)
125 PF05804 KAP: Kinesin-associat 66.8 2.5E+02 0.0055 32.9 17.1 83 14-129 335-421 (708)
126 KOG2933 Uncharacterized conser 65.9 44 0.00096 34.9 9.6 116 89-220 98-215 (334)
127 PF11698 V-ATPase_H_C: V-ATPas 64.3 28 0.0006 31.3 6.9 71 75-148 43-115 (119)
128 KOG0166 Karyopherin (importin) 63.8 67 0.0015 35.9 11.3 128 15-171 157-290 (514)
129 PF01347 Vitellogenin_N: Lipop 63.3 69 0.0015 36.4 11.9 56 115-170 431-496 (618)
130 PF08767 CRM1_C: CRM1 C termin 63.0 2E+02 0.0044 30.1 16.9 143 276-433 69-226 (319)
131 KOG2549 Transcription initiati 62.2 2.7E+02 0.0059 31.4 17.6 207 121-365 209-427 (576)
132 PF08146 BP28CT: BP28CT (NUC21 61.4 1.1E+02 0.0023 28.6 10.7 106 95-206 37-148 (153)
133 PF12830 Nipped-B_C: Sister ch 59.8 68 0.0015 30.8 9.4 125 14-171 12-141 (187)
134 TIGR02270 conserved hypothetic 59.3 44 0.00096 36.4 8.9 84 15-146 122-205 (410)
135 PF04388 Hamartin: Hamartin pr 58.5 66 0.0014 37.4 10.6 88 74-167 69-159 (668)
136 PF14357 DUF4404: Domain of un 58.1 51 0.0011 27.7 7.1 64 64-129 18-81 (85)
137 PF09324 DUF1981: Domain of un 57.0 65 0.0014 27.0 7.7 70 72-144 13-84 (86)
138 KOG2025 Chromosome condensatio 56.6 71 0.0015 37.0 9.9 97 19-146 94-191 (892)
139 PF10363 DUF2435: Protein of u 56.6 52 0.0011 28.0 7.1 68 90-158 14-82 (92)
140 KOG2137 Protein kinase [Signal 56.5 90 0.0019 36.1 10.8 126 74-222 348-476 (700)
141 KOG4653 Uncharacterized conser 56.3 4.2E+02 0.0091 31.7 19.0 157 17-222 734-893 (982)
142 KOG1837 Uncharacterized conser 55.6 86 0.0019 39.4 11.0 93 76-171 1500-1593(1621)
143 COG5096 Vesicle coat complex, 53.2 4.4E+02 0.0096 31.1 15.9 158 19-222 28-209 (757)
144 KOG3961 Uncharacterized conser 53.1 39 0.00084 33.6 6.3 90 117-222 112-204 (262)
145 PF05536 Neurochondrin: Neuroc 53.0 2E+02 0.0044 32.6 13.1 97 70-171 93-191 (543)
146 PF12231 Rif1_N: Rap1-interact 52.7 2.2E+02 0.0048 30.4 12.9 127 14-154 179-309 (372)
147 KOG4524 Uncharacterized conser 52.0 66 0.0014 38.4 9.0 138 97-248 566-706 (1014)
148 PF00790 VHS: VHS domain; Int 51.5 54 0.0012 29.9 6.9 79 17-118 49-127 (140)
149 KOG0166 Karyopherin (importin) 50.9 26 0.00057 39.1 5.4 121 15-162 199-330 (514)
150 TIGR02270 conserved hypothetic 49.4 1.1E+02 0.0023 33.5 9.8 55 14-106 151-205 (410)
151 PF12530 DUF3730: Protein of u 49.1 2.6E+02 0.0057 27.8 12.0 67 89-158 94-161 (234)
152 PF06371 Drf_GBD: Diaphanous G 48.9 42 0.00092 31.5 6.0 108 11-147 67-186 (187)
153 cd03561 VHS VHS domain family; 48.7 2E+02 0.0044 25.9 10.2 74 16-113 43-117 (133)
154 PF12074 DUF3554: Domain of un 48.5 1.2E+02 0.0026 31.7 10.0 94 74-172 21-115 (339)
155 PF13251 DUF4042: Domain of un 48.1 26 0.00057 33.8 4.4 57 95-151 2-72 (182)
156 PF07571 DUF1546: Protein of u 48.1 58 0.0012 27.7 6.0 60 130-203 17-76 (92)
157 smart00638 LPD_N Lipoprotein N 48.0 2.9E+02 0.0063 31.1 13.6 58 114-171 392-453 (574)
158 COG5096 Vesicle coat complex, 47.1 1.3E+02 0.0028 35.4 10.4 90 76-172 90-193 (757)
159 KOG0168 Putative ubiquitin fus 47.0 3.5E+02 0.0077 32.3 13.6 145 19-206 176-365 (1051)
160 KOG0803 Predicted E3 ubiquitin 46.9 7E+02 0.015 31.5 20.2 85 119-222 41-129 (1312)
161 cd03569 VHS_Hrs_Vps27p VHS dom 46.8 1.2E+02 0.0025 28.0 8.4 72 17-113 48-119 (142)
162 PF00514 Arm: Armadillo/beta-c 46.8 35 0.00076 23.9 3.9 29 120-148 13-41 (41)
163 cd03568 VHS_STAM VHS domain fa 46.6 1.2E+02 0.0025 28.1 8.3 74 17-116 44-117 (144)
164 KOG1061 Vesicle coat complex A 46.4 5.5E+02 0.012 30.1 21.7 46 100-145 220-265 (734)
165 PF08623 TIP120: TATA-binding 46.2 1.1E+02 0.0024 29.2 8.2 85 295-380 78-167 (169)
166 KOG2137 Protein kinase [Signal 45.5 1.2E+02 0.0026 35.2 9.6 57 76-137 429-485 (700)
167 PF11640 TAN: Telomere-length 44.7 2.6E+02 0.0056 25.9 12.6 97 15-132 9-120 (155)
168 KOG2021 Nuclear mRNA export fa 43.9 6.2E+02 0.013 30.0 18.2 153 70-228 690-850 (980)
169 KOG1992 Nuclear export recepto 43.9 6.3E+02 0.014 30.2 20.2 235 57-334 531-774 (960)
170 COG5101 CRM1 Importin beta-rel 41.9 3.5E+02 0.0076 31.3 12.2 105 30-149 158-262 (1053)
171 PF04118 Dopey_N: Dopey, N-ter 41.5 4.4E+02 0.0095 27.6 15.6 146 70-252 49-201 (307)
172 PLN03076 ARF guanine nucleotid 41.4 9.6E+02 0.021 31.5 23.2 59 276-334 1454-1513(1780)
173 cd03569 VHS_Hrs_Vps27p VHS dom 40.9 2.9E+02 0.0063 25.3 11.3 89 116-221 38-128 (142)
174 PF13001 Ecm29: Proteasome sta 40.8 2.9E+02 0.0062 30.9 11.8 176 22-252 295-488 (501)
175 KOG4224 Armadillo repeat prote 40.7 5.1E+02 0.011 28.1 13.2 146 15-205 213-363 (550)
176 cd03568 VHS_STAM VHS domain fa 40.0 3E+02 0.0066 25.3 11.4 89 106-209 24-114 (144)
177 PF03224 V-ATPase_H_N: V-ATPas 39.7 4.5E+02 0.0096 27.2 18.5 130 14-170 62-201 (312)
178 PF05804 KAP: Kinesin-associat 39.2 2.5E+02 0.0053 33.0 11.1 96 69-172 484-588 (708)
179 smart00288 VHS Domain present 39.2 1.5E+02 0.0032 26.8 7.7 72 17-112 44-115 (133)
180 PF12612 TFCD_C: Tubulin foldi 38.9 3.6E+02 0.0078 25.8 14.5 149 119-311 11-159 (193)
181 KOG4524 Uncharacterized conser 38.8 8E+02 0.017 29.8 15.1 133 70-216 798-935 (1014)
182 KOG0414 Chromosome condensatio 38.3 8.8E+02 0.019 30.2 16.8 73 75-150 919-992 (1251)
183 PF08161 NUC173: NUC173 domain 38.1 85 0.0018 30.7 6.3 61 99-159 20-82 (198)
184 PF01347 Vitellogenin_N: Lipop 37.3 3.5E+02 0.0076 30.7 12.2 12 29-40 325-336 (618)
185 KOG3961 Uncharacterized conser 37.3 1.1E+02 0.0024 30.5 6.7 94 76-171 112-209 (262)
186 PF13001 Ecm29: Proteasome sta 36.9 1.5E+02 0.0034 33.0 8.9 66 89-154 384-449 (501)
187 PF00514 Arm: Armadillo/beta-c 36.7 43 0.00093 23.4 3.0 23 14-36 16-38 (41)
188 PF12719 Cnd3: Nuclear condens 35.8 5E+02 0.011 26.6 17.3 73 116-208 23-96 (298)
189 cd03565 VHS_Tom1 VHS domain fa 35.5 3.5E+02 0.0076 24.8 11.5 92 117-221 36-132 (141)
190 cd03567 VHS_GGA VHS domain fam 35.2 3E+02 0.0064 25.3 9.0 85 16-123 44-130 (139)
191 KOG1060 Vesicle coat complex A 34.3 8.7E+02 0.019 29.0 20.9 151 12-222 37-188 (968)
192 KOG4535 HEAT and armadillo rep 33.6 1.8E+02 0.004 32.4 8.3 124 19-151 56-182 (728)
193 PF12333 Ipi1_N: Rix1 complex 33.1 1.4E+02 0.0031 25.7 6.2 57 115-171 7-64 (102)
194 PF08767 CRM1_C: CRM1 C termin 33.1 5.9E+02 0.013 26.6 21.9 76 138-222 91-170 (319)
195 cd03572 ENTH_epsin_related ENT 32.5 1.2E+02 0.0027 27.2 5.9 18 18-35 46-63 (122)
196 KOG2032 Uncharacterized conser 32.1 2.4E+02 0.0053 31.4 9.0 108 20-154 268-377 (533)
197 smart00288 VHS Domain present 31.4 3.9E+02 0.0085 24.0 12.4 99 107-221 25-125 (133)
198 PF11919 DUF3437: Domain of un 30.3 1.2E+02 0.0025 25.9 5.1 34 192-225 5-38 (90)
199 cd00197 VHS_ENTH_ANTH VHS, ENT 30.1 2E+02 0.0043 24.9 6.8 46 116-161 34-79 (115)
200 smart00638 LPD_N Lipoprotein N 30.0 2.9E+02 0.0063 31.2 9.8 13 277-289 513-525 (574)
201 cd00256 VATPase_H VATPase_H, r 29.4 8E+02 0.017 27.0 19.9 130 14-172 105-240 (429)
202 KOG0803 Predicted E3 ubiquitin 28.9 1.3E+03 0.028 29.3 17.5 113 58-171 21-135 (1312)
203 PF10350 DUF2428: Putative dea 28.8 6.1E+02 0.013 25.5 11.5 142 69-222 90-245 (255)
204 KOG0211 Protein phosphatase 2A 28.6 1.1E+03 0.023 28.2 16.2 167 26-248 495-663 (759)
205 cd03567 VHS_GGA VHS domain fam 27.4 2.2E+02 0.0048 26.1 6.8 82 117-208 36-119 (139)
206 PF14668 RICTOR_V: Rapamycin-i 27.0 66 0.0014 26.3 2.9 32 75-109 28-59 (73)
207 PF12783 Sec7_N: Guanine nucle 26.7 5.2E+02 0.011 23.9 12.9 117 75-205 10-146 (168)
208 cd03561 VHS VHS domain family; 26.5 4.7E+02 0.01 23.4 12.2 92 116-220 34-129 (133)
209 COG5116 RPN2 26S proteasome re 26.3 3.6E+02 0.0078 30.8 9.1 102 92-222 565-667 (926)
210 PF00790 VHS: VHS domain; Int 25.6 5E+02 0.011 23.4 12.9 67 105-171 28-96 (140)
211 COG5218 YCG1 Chromosome conden 25.5 4.3E+02 0.0093 30.4 9.5 94 19-143 100-194 (885)
212 KOG2160 Armadillo/beta-catenin 24.9 2.1E+02 0.0045 30.5 6.8 71 89-159 134-207 (342)
213 PF11864 DUF3384: Domain of un 24.2 9.8E+02 0.021 26.3 13.6 89 70-170 212-311 (464)
214 smart00185 ARM Armadillo/beta- 23.7 1.1E+02 0.0024 20.5 3.3 28 120-147 13-40 (41)
215 PF04054 Not1: CCR4-Not comple 23.4 9.6E+02 0.021 25.9 12.8 30 393-426 276-307 (379)
216 PF14868 DUF4487: Domain of un 23.0 7.7E+02 0.017 28.1 11.3 129 65-209 424-556 (559)
217 KOG3723 PH domain protein Melt 22.9 1.2E+03 0.026 26.8 17.4 42 72-113 78-124 (851)
218 KOG4500 Rho/Rac GTPase guanine 22.8 2.3E+02 0.005 31.2 6.7 74 120-205 316-390 (604)
219 PF09324 DUF1981: Domain of un 22.5 75 0.0016 26.6 2.5 60 19-106 27-86 (86)
220 KOG0929 Guanine nucleotide exc 22.5 5.5E+02 0.012 32.8 10.6 130 21-171 1185-1322(1514)
221 COG1413 FOG: HEAT repeat [Ener 22.0 5E+02 0.011 26.7 9.3 62 76-150 75-137 (335)
222 KOG0168 Putative ubiquitin fus 21.6 1.5E+03 0.032 27.4 17.3 175 121-319 169-354 (1051)
223 KOG2973 Uncharacterized conser 21.5 4.1E+02 0.009 28.0 8.0 23 13-35 6-28 (353)
224 PF14961 BROMI: Broad-minded p 21.1 1.1E+03 0.023 29.7 12.3 139 77-222 160-310 (1296)
225 COG5095 TAF6 Transcription ini 20.3 1E+03 0.022 25.1 12.4 95 114-222 272-377 (450)
226 KOG0567 HEAT repeat-containing 20.2 2.5E+02 0.0055 28.9 6.1 58 77-145 220-277 (289)
227 PF03130 HEAT_PBS: PBS lyase H 20.1 86 0.0019 20.1 1.9 26 135-170 1-26 (27)
No 1
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-51 Score=469.91 Aligned_cols=451 Identities=24% Similarity=0.261 Sum_probs=365.7
Q ss_pred hhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHH
Q 041545 18 SLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKL 97 (554)
Q Consensus 18 ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq 97 (554)
+-.++.+.+++++..+++.++++.-+|+ +.+.+.|.++++.+..+++..+..++..-.+
T Consensus 1092 ~~~~~~~~l~~~~~~~~~r~~~s~v~~~---------------------k~~~~~~~~l~~~i~~li~~~d~~s~e~~a~ 1150 (1621)
T KOG1837|consen 1092 AKNTPSQKLLHVLADTMQRCVLSVVQYQ---------------------KLDENLTGAVLLLIGELIRSHDMRSTEHHAT 1150 (1621)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHhHH---------------------HHhhhhhhhhhhHHHHHHHHhccCCchHHHH
Confidence 4456778888888888887777766543 4558999999999999999888777888888
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHH--HHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhh
Q 041545 98 TAVSTLEVLANRFASYDSVFNLCLASV--TNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTY 175 (554)
Q Consensus 98 ~Al~~L~~lA~~~g~~~~~~~~~L~~v--~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~ 175 (554)
.|+.|+-.++.+|....+.|..+++.+ ..+++++...++.++++|....+.+++...+++.|+++++.+.++.+..
T Consensus 1151 ~~~~~l~~~~~~~~a~~~~~~~~i~~va~~~~~~~~~~~vr~ss~~~~~~~~~tLl~~~~~~~~~v~~~s~~~~~~st-- 1228 (1621)
T KOG1837|consen 1151 SALKTLLVTAQRFIARFSKFQYDIAAVAGAGGLGNSGHRVRQSSLGGNTFGSDTLLICSLTCIQRVVDQSASFFDEST-- 1228 (1621)
T ss_pred HHHHHHHHHHHHhhhcccccccchhhhccccCcCcchhhhhhhhhhhhhcccHHHHHhhhhhhhhhhhHHHHHHHHhc--
Confidence 999999999998887655455444433 4567778899999999999999999999999999999999998776521
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHH
Q 041545 176 VDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIV 255 (554)
Q Consensus 176 ~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~ 255 (554)
++..++..-++++..++.-+..-.+.+-+||.+ + +.+.+..+.+..+.+|..++++++++.+|
T Consensus 1229 --------~d~~~~~~eLl~~s~l~~~~~vl~~~~ss~~~~-~-----l~~~~~~~~a~e~~sr~~sl~~lla~~i~--- 1291 (1621)
T KOG1837|consen 1229 --------GDVIIRLCELLARSGLPSFLLVLNQPSSSLTAA-G-----LGSKTVIDFASELDSRLLSLIELLATMIP--- 1291 (1621)
T ss_pred --------cCcchhHHHHHHHHHHHHHHHhhccCccccchh-h-----ccchhhhhhHHHHHHHHHHHHHHHhcccc---
Confidence 133334444444444443333333333334444 2 23344444566888899999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhh
Q 041545 256 LIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLR 335 (554)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R 335 (554)
+|.+++++...|+++...+...++.+++++++++..|+|+++..+++.++++|+.+||+|
T Consensus 1292 --------------------~r~~l~~L~~~~~~~~~l~n~~~~~~l~~le~~~~~~~ks~i~s~~~~l~~~~l~~ldfR 1351 (1621)
T KOG1837|consen 1292 --------------------LRLLLQRLKRIYSEASALSNDEVASLLSDLEEAVEIMRKSAITSGCTGLFDLLLIALDFR 1351 (1621)
T ss_pred --------------------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHhccchHHHHHhhhhhhh
Confidence 999999999999998888888899999999999999999999999999999999999999
Q ss_pred hhc-ccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchh
Q 041545 336 RQH-RVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSL 414 (554)
Q Consensus 336 ~~~-~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKsl 414 (554)
+++ +...++++.+|.+|+++++.+|+||||++|||+|.++++||.+|++..+ ..+..+|+++||+|++.++|+|||+
T Consensus 1352 ~~~~~~~~e~v~~~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a--~~~~~~Rli~fy~f~~~l~esl~si 1429 (1621)
T KOG1837|consen 1352 SQEAPLFSENVDKLERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKA--EQKCLERLISFYHFADYLQESLKSI 1429 (1621)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCcccc--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 6789999999999999999999999999999999999999998754333 3488999999999999999999999
Q ss_pred hccchhhHHHHHHHHhhhhhcccccchhhhhhhhhhhhcccccccccchhhhHHHHHHHHHHHHHhhccccccccccchh
Q 041545 415 FVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDST 494 (554)
Q Consensus 415 ftpy~~~ll~~~~~~L~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~l~~~vl~~L~~~F~~D~~~~~F~~~~ 494 (554)
|||||+|++++.+.+|+..+ .+....+++- ..++ .+.-|.++++|+.||.+||.||++. +||+.+
T Consensus 1430 ~~pYf~~~l~~~~~~L~k~n---~s~~~~~~~~------~~~~-----~r~~~~~~~Lvl~cl~~~~~~Dt~~-~f~t~~ 1494 (1621)
T KOG1837|consen 1430 VTPYFGYLLEPRVILLKKIN---ASKHRWFWLL------PVNQ-----SRKPLLLGTLVLNCLKDLFLFDTIE-SFVTKS 1494 (1621)
T ss_pred HHHHHHHHhhHHHHHHHHhh---hhhhhhhhhh------cccc-----cchhHHHHHHHHHHHHHHHhhhhhH-HHHhhh
Confidence 99999999999999999987 3322111110 0001 2345889999999999999999954 699999
Q ss_pred hHhhhHHHHHHHhhcCCCCCcccccCCCchhhhhhhhHHHHHHHHHhhCCccccccccCC
Q 041545 495 NFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTDLLWKPLNHE 554 (554)
Q Consensus 495 rf~~l~~pLv~QL~~~~~~~~~~~~~~~~~~~~~~~lvpci~~la~a~~~d~lwK~LN~~ 554 (554)
||+.++.|+|+|+.|..++. ...++|.++++|||+++++|.+|| |||||||
T Consensus 1495 r~~~~~~p~v~ql~n~~~e~-------~~~~~v~~~li~~i~~~~~a~~~d--~~pl~~k 1545 (1621)
T KOG1837|consen 1495 RFELLSYPLVSQLVNVLLEF-------YASDIVSKLLIAEIASDSVADKDD--LKPLNQK 1545 (1621)
T ss_pred hhhhhhhhhHHHHHHhhccc-------hhhhHHHHHHHHHHHhhccCChhh--hHHHHHH
Confidence 99999999999999964432 235679999999999999998888 9999985
No 2
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=100.00 E-value=9.6e-38 Score=290.57 Aligned_cols=151 Identities=45% Similarity=0.765 Sum_probs=132.9
Q ss_pred CCccccchHHHHHHHHHHhhhhhhc--ccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhcccccccccc
Q 041545 314 RSSIGGFHGKIFDQCLLALDLRRQH--RVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKS 391 (554)
Q Consensus 314 ~~~i~~~~~~l~~~~l~aLd~R~~~--~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~ 391 (554)
|+++.++++.++++|++|||+|+++ +.+.++++++|+++++|+++|||||||++|||+|.|++|||..++++.+. .
T Consensus 1 ks~i~~~~~~l~~~~l~ald~R~~~~~~~~~~~v~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~--~ 78 (153)
T PF08146_consen 1 KSSISKNSPQLFDFFLQALDFRRQQRSKFDLEDVDEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDS--S 78 (153)
T ss_pred ChHHHHhHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccC--c
Confidence 4578899999999999999999998 68999999999999999999999999999999999999999987766543 3
Q ss_pred ccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhhcccccchhhhhhhhhhhhcccccccccchhhhHHHHH
Q 041545 392 KSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRA 471 (554)
Q Consensus 392 ~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~l~~ 471 (554)
+..+|+++|||++++++|+|||||||||||++++++++|+..+ ... .. . ..+.|.|++
T Consensus 79 ~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~---~~~-----~~--------~------~~~~~~L~~ 136 (153)
T PF08146_consen 79 GSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFN---SSK-----TE--------S------KSKSWELWR 136 (153)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcc-----cc--------c------hhhHHHHHH
Confidence 8899999999999999999999999999999999999999975 110 00 0 013477888
Q ss_pred HHHHHHHHhhccccccccc
Q 041545 472 LVISSLHKCFLYDTASLKF 490 (554)
Q Consensus 472 ~vl~~L~~~F~~D~~~~~F 490 (554)
+||++|++||+||+|+ |
T Consensus 137 ~vL~~L~~~F~~D~~~--F 153 (153)
T PF08146_consen 137 LVLSTLQKCFLHDQDG--F 153 (153)
T ss_pred HHHHHHHHHHhhccCC--C
Confidence 9999999999999996 7
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.5e-19 Score=205.06 Aligned_cols=373 Identities=16% Similarity=0.157 Sum_probs=248.9
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.++.|++++.++||+.|+..|..=...-. +.=.+||..+||.|..++++.++++..
T Consensus 479 ~l~~L~~~~~~~v~e~vvtaIasvA~AA~------------------------~~F~pY~d~~Mp~L~~~L~n~~~~d~r 534 (1075)
T KOG2171|consen 479 KLLLLLQSSKPYVQEQAVTAIASVADAAQ------------------------EKFIPYFDRLMPLLKNFLQNADDKDLR 534 (1075)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHh------------------------hhhHhHHHHHHHHHHHHHhCCCchhhH
Confidence 67889999999999999999985443322 111789999999999999998888899
Q ss_pred hHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHH---hcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHh
Q 041545 94 SLKLTAVSTLEVLANRFASY--DSVFNLCLASVTNS---ISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKK 168 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~---l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~ 168 (554)
++|++.++|+++++.++|++ +|.-.+++....+. ...++.+++++.+.+||.||+++|++|.||||.+||+++++
T Consensus 535 ~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 535 ELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHh
Confidence 99999999999999999998 56677777777665 55578999999999999999999999999999999999998
Q ss_pred hhhhhh--hhhhhccc-c-----------------cchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCC
Q 041545 169 SREIST--YVDVQNES-N-----------------EDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEY 228 (554)
Q Consensus 169 l~~~~~--~~~~~~~~-~-----------------~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~ 228 (554)
.+...+ ..++.+++ . +...+.-.-..+++-+|..+...+..-|.||+++++...+..-.+
T Consensus 615 a~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f 694 (1075)
T KOG2171|consen 615 ARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKF 694 (1075)
T ss_pred hccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 876331 01111100 0 000111234568899999999999999999999999932222222
Q ss_pred CCCC-ChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhh--cCcchHHHHHHHH
Q 041545 229 LPGS-DPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVD--AGDSSLVIAFEIL 305 (554)
Q Consensus 229 ~~~~-~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~--~~~~~l~~ll~~L 305 (554)
.. +..++..+.++++++....- +....+.+ ++.+...+.+++-..+. .....+..+|+.+
T Consensus 695 --~fhdgVR~aa~~~~p~ll~~~~~-------A~~~~p~~--------l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f 757 (1075)
T KOG2171|consen 695 --YFHDGVRKAAAESMPQLLTCALK-------ACQGGPEY--------LKQLWEAIRPALIKALEEEPETEVLSEILESF 757 (1075)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHH-------HhccChHH--------HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 12 23444455555444432111 00111112 34444444444433332 2334577999999
Q ss_pred HHHHHhcCCCccc-cchHHHHHHHHHH-hhh--hhh-cc----------cChhhHHHHHHHHHHHHHH---HHHhhcccc
Q 041545 306 GNIISRMDRSSIG-GFHGKIFDQCLLA-LDL--RRQ-HR----------VSIQDIDIVEKSVISTVIS---LTMKLTETM 367 (554)
Q Consensus 306 ~~~i~~~~~~~i~-~~~~~l~~~~l~a-Ld~--R~~-~~----------~~~~~i~~vE~~vi~a~~~---lVlKLsE~t 367 (554)
..+|+.||.-.+. .+...+....+.. ++. |.+ .+ ...+++++-|..+.+.+.+ -++|-.-++
T Consensus 758 ~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~ 837 (1075)
T KOG2171|consen 758 AECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGS 837 (1075)
T ss_pred HHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHcccc
Confidence 9999999976553 3444444333332 222 111 01 1122233333334444444 445556688
Q ss_pred hhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhh
Q 041545 368 FRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDA 433 (554)
Q Consensus 368 FrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~ 433 (554)
|-|.|..++--...-..+. ....|.++.+ .+++++++.+.-.++|+.+++..+.+.+.+.
T Consensus 838 f~p~f~~~~p~iv~~l~~~-----~~~~r~~av~-~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~ 897 (1075)
T KOG2171|consen 838 FLPFFENFLPLIVKLLKSK-----KTVARQWAVC-IFDDLIEGCGEASAKYKERFLPLVLEALQDS 897 (1075)
T ss_pred ccHHHHHHHHHHHHHHhcC-----CcHHHHHHHH-HHHHHHHhcccccchHHHHHHHHHHHHcCCC
Confidence 8888877765443322222 2334999954 5999999999999999999999999999884
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.7e-19 Score=193.63 Aligned_cols=311 Identities=18% Similarity=0.243 Sum_probs=238.3
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~ 171 (554)
+|+||++++.+|+++|.-||. ..+..+||.+.+.+.+++|-+++++++++|+|+++|-..++||||.++|.++..+.+
T Consensus 368 dWNLRkCSAAaLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred cccHhhccHHHHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhcc
Confidence 389999999999999999995 478888999999999999999999999999999999999999999999999999887
Q ss_pred hh-------------hhhhhhcccc-c------------chhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhc
Q 041545 172 IS-------------TYVDVQNESN-E------------DKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLC 225 (554)
Q Consensus 172 ~~-------------~~~~~~~~~~-~------------~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~ 225 (554)
.. |..|..++.. + -.|+++.++.++|+++..+.+..+.-+.|||+.|+..+...
T Consensus 446 KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~a 525 (885)
T KOG2023|consen 446 KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFA 525 (885)
T ss_pred CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 22 4445544322 1 46788899999999999999999999999999999998544
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH--HHHHHhHhhHHHHHhhhhhhcCcchHHHHHH
Q 041545 226 PEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFI--LHLVRLALPPLLKIYSGAVDAGDSSLVIAFE 303 (554)
Q Consensus 226 ~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~--~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~ 303 (554)
=.+| .++++...+++| .++|+.+. ..+ +.|..+|+||+.+.|+. +.+.+..+.++++
T Consensus 526 f~kY--Q~KNLlILYDAI-gtlAdsvg-----------------~~Ln~~~YiqiLmPPLi~KW~~-lsd~DKdLfPLLE 584 (885)
T KOG2023|consen 526 FGKY--QKKNLLILYDAI-GTLADSVG-----------------HALNKPAYIQILMPPLIEKWEL-LSDSDKDLFPLLE 584 (885)
T ss_pred HHHH--hhcceehHHHHH-HHHHHHHH-----------------HhcCcHHHHHHhccHHHHHHHh-cCcccchHHHHHH
Confidence 2222 256888899999 89999987 333 36689999999999987 5578889999999
Q ss_pred HHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhc---ccChhhHHHHHHHHHHHHHHHHHhhcc---cchhhHHHH--H
Q 041545 304 ILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQH---RVSIQDIDIVEKSVISTVISLTMKLTE---TMFRPLFIR--S 375 (554)
Q Consensus 304 ~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~---~~~~~~i~~vE~~vi~a~~~lVlKLsE---~tFrPLf~k--l 375 (554)
||+....+++. .+..+...+|..|...++.--+. .....+++.-|...+=+.++++..|.| ..--||.++ +
T Consensus 585 ClSsia~AL~~-gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl 663 (885)
T KOG2023|consen 585 CLSSIASALGV-GFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNL 663 (885)
T ss_pred HHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccH
Confidence 99999999988 67789999999999998843221 112234444455555566666666666 222233211 1
Q ss_pred HhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhh
Q 041545 376 IEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTD 432 (554)
Q Consensus 376 ~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~ 432 (554)
.+--.....+. ...-|..+ |.+++.+....-..+-||...|+.....-|+.
T Consensus 664 ~~lll~C~~D~-----~peVRQS~-FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~ 714 (885)
T KOG2023|consen 664 LDLLLQCLQDE-----VPEVRQSA-FALLGDLTKACFEHVIPNLADFLPILGANLNP 714 (885)
T ss_pred HHHHHHHhccC-----ChHHHHHH-HHHHHHHHHHHHHhccchHHHHHHHHhhcCCh
Confidence 11111111111 35578777 88999999999999999999999887644443
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.7e-08 Score=116.07 Aligned_cols=340 Identities=10% Similarity=0.056 Sum_probs=231.8
Q ss_pred ChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCC------------CC
Q 041545 23 EICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNST------------GE 90 (554)
Q Consensus 23 ~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~------------~~ 90 (554)
+..+|..||+.|..=+..-. .+- |+ ..++...+++.+........ ++
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap---~~~---k~---------------~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAP---AMC---KK---------------LALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhH---HHh---hh---------------chhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 47899999999996665511 111 11 12233345555554443211 11
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhh
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSR 170 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~ 170 (554)
+.......|..+|+.+|...|.+ ..+..+++.+-..+++.+|.-|..+++++|+++++++..+++.||+|||.++..++
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~-~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~ 399 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGK-QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN 399 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChh-hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC
Confidence 22337889999999999999973 46888889999999999999999999999999999999999999999999999777
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHH-HHh-hccCCCCCCChhHHHHHHHHHHHHH
Q 041545 171 EISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITE-LLV-LCPEYLPGSDPKLKVKADAVRRLLT 248 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~-~l~-l~~~~~~~~~~~~~s~~~~l~~~la 248 (554)
+. ...+..++|.+++.+-..++.++..|-.+.+. .+. .... .+....-..+..++..+..
T Consensus 400 Dp----------------hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~--~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 400 DP----------------HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS--TQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred CC----------------CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc--cCchHHHHHHHHHHHHHHH
Confidence 63 35689999999999999999888865555544 221 1111 1111222345556655555
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHH-HhhhhhhcCcc-hHHHHHHHHHHHHHhcCCCccccchHHHHH
Q 041545 249 DKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLK-IYSGAVDAGDS-SLVIAFEILGNIISRMDRSSIGGFHGKIFD 326 (554)
Q Consensus 249 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~-~~~~~~~~~~~-~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~ 326 (554)
.... +.| .-.||.+.+ .+..+...++. ........++++-.+++. .+.+|.+.+.-
T Consensus 462 ~~~~-----------------~~l----~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~-~F~pY~d~~Mp 519 (1075)
T KOG2171|consen 462 ECDK-----------------SIL----EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE-KFIPYFDRLMP 519 (1075)
T ss_pred hCcH-----------------HHH----HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh-hhHhHHHHHHH
Confidence 4444 332 223444444 33333333333 334666777777777777 67788888888
Q ss_pred HHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHH
Q 041545 327 QCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNK 406 (554)
Q Consensus 327 ~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~ 406 (554)
.+...|.- .+.++.-.+-+..++|..-+-+......|+|+-..++.-+... .++. .......|+.. +.+...
T Consensus 520 ~L~~~L~n-----~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~-~~~~-~~~dd~~~sy~-~~~war 591 (1075)
T KOG2171|consen 520 LLKNFLQN-----ADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLEL-QGSD-QDDDDPLRSYM-IAFWAR 591 (1075)
T ss_pred HHHHHHhC-----CCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhh-cccc-hhhccccHHHH-HHHHHH
Confidence 77776644 2335566677778888888888888899999999888877653 2111 11123344333 667888
Q ss_pred HHHhcchhhccchhhHHHHHHHHhhh
Q 041545 407 LAESHRSLFVPYFKYLLEGCVQHLTD 432 (554)
Q Consensus 407 l~e~LKslftpy~~~ll~~~~~~L~~ 432 (554)
+...|+.=|.||...++++.....+-
T Consensus 592 mc~ilg~~F~p~L~~Vmppl~~ta~~ 617 (1075)
T KOG2171|consen 592 MCRILGDDFAPFLPVVMPPLLKTARL 617 (1075)
T ss_pred HHHHhchhhHhHHHHHhHHHHHhhcc
Confidence 99999999999999999999877654
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=4.8e-06 Score=91.32 Aligned_cols=378 Identities=17% Similarity=0.211 Sum_probs=222.0
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccc--hHHHHHHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSA--FESFRKMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~~l~~~L~~il~~~~~~~ 91 (554)
.|+++|.+++...++-|++-|..=..+... +-+++ ..-+.-|+|.+..+.+. .
T Consensus 132 ~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~---------------------~lds~~~~rpl~~mipkfl~f~~h----~ 186 (885)
T KOG2023|consen 132 QLCELLDSPDYNTCEGAFGALQKICEDSAQ---------------------FLDSDVLTRPLNIMIPKFLQFFKH----P 186 (885)
T ss_pred HHHHHhcCCcccccchhHHHHHHHHhhhHH---------------------HHhhhcccCchHHhHHHHHHHHhC----C
Confidence 588999999999999999888733333221 11111 12234599999999985 3
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHHHHHHH----HHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHH
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFNLCLAS----VTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRK 167 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~----v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~ 167 (554)
...+|.-|+.|+..+.-.-. ..+..-+.. +...-+.+++.||...-.++.-+-++.-++++|||+.||..++.
T Consensus 187 spkiRs~A~~cvNq~i~~~~---qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~ 263 (885)
T KOG2023|consen 187 SPKIRSHAVGCVNQFIIIQT---QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQ 263 (885)
T ss_pred ChhHHHHHHhhhhheeecCc---HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHH
Confidence 56799999999876654332 123323333 33334667899999998999999999999999999999999887
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH--hcccccccHHHHHHHHhhccCCCCCCC------------
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK--LGGFLNPYLGDITELLVLCPEYLPGSD------------ 233 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~--l~~FlsPYL~~il~~l~l~~~~~~~~~------------ 233 (554)
.-++ .++.+-+-+|-...++.+. .+..+.|||++++-.+...-.| ++.|
T Consensus 264 ~tqd----------------~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Y-sd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 264 RTQD----------------VDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVY-SDDDIILLKNNEEDES 326 (885)
T ss_pred HccC----------------cchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCcc-ccccHHHhcCcccccc
Confidence 4332 2345777788877777764 2355779999999886433333 1111
Q ss_pred -----hhHHHHHH------------------------------HHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH-HHHHH
Q 041545 234 -----PKLKVKAD------------------------------AVRRLLTDKIQVIVLIKMLVIDFDLKFLLFI-LHLVR 277 (554)
Q Consensus 234 -----~~~~s~~~------------------------------~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~-~~~~r 277 (554)
+.++.|.. .+|++-|..++ +=.+ .. -++.-
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLD-----------VLan---vf~~elL~ 392 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALD-----------VLAN---VFGDELLP 392 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHH-----------HHHH---hhHHHHHH
Confidence 01111110 24444444444 0000 00 12244
Q ss_pred hHhhHHHHHhhhhhhcCc--chHHHHHHHHHH-HHHhcCCCccccchHHHHHHHHHHhhhhhhc-c-cChhhHHHHHHHH
Q 041545 278 LALPPLLKIYSGAVDAGD--SSLVIAFEILGN-IISRMDRSSIGGFHGKIFDQCLLALDLRRQH-R-VSIQDIDIVEKSV 352 (554)
Q Consensus 278 ~Llpal~~~~~~~~~~~~--~~l~~ll~~L~~-~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~-~-~~~~~i~~vE~~v 352 (554)
+++|-+.+...+ ++.. .+-...+..+++ |.+ ....|.+.+.-|+++.|+-+..- + .+==++++
T Consensus 393 ~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~-----g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsR----- 460 (885)
T KOG2023|consen 393 ILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQ-----GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSR----- 460 (885)
T ss_pred HHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhh-----hcccchHHHHHHHHHHhccCccceeeeeeeeHhh-----
Confidence 455555544322 1111 121222233322 332 45679999999999998864311 0 00011121
Q ss_pred HHHHHHHHHhhc-ccchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhh
Q 041545 353 ISTVISLTMKLT-ETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLT 431 (554)
Q Consensus 353 i~a~~~lVlKLs-E~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~ 431 (554)
+-.+|.-.+ +.-|+|+..-+..--... .+.=.=+=|.-+..+-|.=..=-|||.+|+|+..+..+.
T Consensus 461 ---ys~wv~~~~~~~~f~pvL~~ll~~llD~----------NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 461 ---YSKWVVQDSRDEYFKPVLEGLLRRLLDS----------NKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG 527 (885)
T ss_pred ---hhhhHhcCChHhhhHHHHHHHHHHHhcc----------cHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 233333333 356788777666543321 111111225557788888888999999999999998887
Q ss_pred hhhcccccchhhhhhhhhhhhcccccccccchhhhHHHHHHHHHHHHHhhccccccccccch-hhHhhhHHHHHHHhhcC
Q 041545 432 DAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDS-TNFQVLLKPIVSQLAAE 510 (554)
Q Consensus 432 ~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~l~~~vl~~L~~~F~~D~~~~~F~~~-~rf~~l~~pLv~QL~~~ 510 (554)
.+. || |- +-++ =.+.+|..+.-| =+++ .--+.||+||++-.+.-
T Consensus 528 kYQ----------~K------------NL---lILY----DAIgtlAdsvg~------~Ln~~~YiqiLmPPLi~KW~~l 572 (885)
T KOG2023|consen 528 KYQ----------KK------------NL---LILY----DAIGTLADSVGH------ALNKPAYIQILMPPLIEKWELL 572 (885)
T ss_pred HHh----------hc------------ce---ehHH----HHHHHHHHHHHH------hcCcHHHHHHhccHHHHHHHhc
Confidence 753 11 11 1112 256666655422 3344 34799999999866554
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.5e-05 Score=88.84 Aligned_cols=369 Identities=14% Similarity=0.161 Sum_probs=224.1
Q ss_pred hhcCChhHHHHHHHHHH----HHhcccCC-ccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCC---CC
Q 041545 19 LFNGEICTCEQALGLLC----ETVKDLDM-AKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNST---GE 90 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~----~kl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~---~~ 90 (554)
.+++...|.-+++|.-+ |+..-.-. .+.-.+ .+- +++. +|+. ..+..++|.|.+.+..-+ ++
T Consensus 268 mks~~deValQaiEFWsticeEEiD~~~e~~e~~d~---~~~---p~~~-~fa~---~a~~~v~P~Ll~~L~kqde~~d~ 337 (859)
T KOG1241|consen 268 MKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ---GLP---PSSK-YFAR---QALQDVVPVLLELLTKQDEDDDD 337 (859)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCC---chhh-HHHH---HHHhHhhHHHHHHHHhCCCCccc
Confidence 46888999999998766 33320000 000000 000 1221 2332 233458888888886532 47
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHhh
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKKS 169 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~l 169 (554)
++|+...+|-.||.++|+.+|. .....+++-+.+.++++||+-|..+..++|++-.+--+. .-|..+..+|.++...
T Consensus 338 DdWnp~kAAg~CL~l~A~~~~D--~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm 415 (859)
T KOG1241|consen 338 DDWNPAKAAGVCLMLFAQCVGD--DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLM 415 (859)
T ss_pred ccCcHHHHHHHHHHHHHHHhcc--cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHh
Confidence 7899999999999999999994 467789999999999999999999999999998876655 5888999999998877
Q ss_pred hhhhh-----hhhhhc-------cc--cc------------chhhHHHHHHHHHHHHHHHHHHhc----c-----ccccc
Q 041545 170 REIST-----YVDVQN-------ES--NE------------DKTQRESLMASVLITLEAVIDKLG----G-----FLNPY 214 (554)
Q Consensus 170 ~~~~~-----~~~~~~-------~~--~~------------~~d~~~~l~~s~lsaL~~lv~~l~----~-----FlsPY 214 (554)
.+... ..|... +. .+ .......+-..++-++..++++.+ . +..||
T Consensus 416 ~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~ 495 (859)
T KOG1241|consen 416 SDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPF 495 (859)
T ss_pred cCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchh
Confidence 65321 111110 00 00 000011234455555555554433 2 56689
Q ss_pred HHHHHHHHhhccCCCCCCChh-HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhh-hhhh
Q 041545 215 LGDITELLVLCPEYLPGSDPK-LKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYS-GAVD 292 (554)
Q Consensus 215 L~~il~~l~l~~~~~~~~~~~-~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~-~~~~ 292 (554)
-+.|+..+....+...|.+.+ +.+.+++| ..+.+..| .++-..+..+.-.++.-+.++.+ +...
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeAL-mElIk~st-------------~~vy~~v~~~~l~il~kl~q~i~~~~l~ 561 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEAL-MELIKNST-------------DDVYPMVQKLTLVILEKLDQTISSQILS 561 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHH-HHHHHcCc-------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999875555544443333 34566666 33334444 11111211113333443444443 1111
Q ss_pred -cCc---chH-HHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcc--
Q 041545 293 -AGD---SSL-VIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTE-- 365 (554)
Q Consensus 293 -~~~---~~l-~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE-- 365 (554)
++. ..+ +.++..|...++++++ .+....+.+...|++.|+-.+.. . ++..+.-+.-.++--|..
T Consensus 562 ~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s~-~-------v~e~a~laV~tl~~~Lg~~F 632 (859)
T KOG1241|consen 562 LADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRSA-V-------VHEEAFLAVSTLAESLGKGF 632 (859)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCCccc-c-------chHHHHHHHHHHHHHHhHhH
Confidence 111 123 3677999999999999 88899999999999999983221 1 122222223333333333
Q ss_pred ----cchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhh
Q 041545 366 ----TMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAK 434 (554)
Q Consensus 366 ----~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~ 434 (554)
.+|+|+..+= .+.. ....=+.+-.+++.+++..|+.-|.||...+..-.++-|...+
T Consensus 633 ~kym~~f~pyL~~g----L~n~--------~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 633 AKYMPAFKPYLLMG----LSNF--------QEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPN 693 (859)
T ss_pred HHHHHHHHHHHHHH----hhcc--------hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcc
Confidence 3455555432 2111 1123345668999999999999999999999998888887643
No 8
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.48 E-value=8.2e-05 Score=80.75 Aligned_cols=322 Identities=15% Similarity=0.122 Sum_probs=195.7
Q ss_pred HHHHHHHHHhhccCC---CCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 041545 74 RKMCSEVVLLVDNST---GESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVL 150 (554)
Q Consensus 74 ~~l~~~L~~il~~~~---~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vL 150 (554)
...+|.|..++...+ ++++|+.-.+|-.||.+.|...|. ..+.++++.+.+.|.+++|+-|+.+..++|++..+=
T Consensus 320 ~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 320 ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 358899999997633 478999999999999999999994 577789999999999999999999999999987754
Q ss_pred chh-hhchhhHHHHHHHHhhhhhhh-----hhhh-------hcc--ccc-------------chhhHHHHHHHHHHHHHH
Q 041545 151 GLK-ALAELPLIMENVRKKSREIST-----YVDV-------QNE--SNE-------------DKTQRESLMASVLITLEA 202 (554)
Q Consensus 151 g~~-~iP~LP~imP~ll~~l~~~~~-----~~~~-------~~~--~~~-------------~~d~~~~l~~s~lsaL~~ 202 (554)
-.. .-|+.|..+|.++....+... ..|. +.+ +.. --|.. .....+.-.+..
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p-~~~~ncsw~~~n 476 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCP-FRSINCSWRKEN 476 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccc-hHHhhhHHHHHh
Confidence 333 467777777777765443210 0011 000 000 00111 111122222333
Q ss_pred HHH-------HhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHH
Q 041545 203 VID-------KLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHL 275 (554)
Q Consensus 203 lv~-------~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~ 275 (554)
+++ +.++|+.|+-+.|+..++........ +. +.+.+..+.|.+.|.++. +.|.+.+..+
T Consensus 477 lv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~N-e~---n~R~s~fsaLgtli~~~~----------d~V~~~~a~~ 542 (858)
T COG5215 477 LVDHIAKAVREVESFLAKFYLAILNALVKGTELALN-ES---NLRVSLFSALGTLILICP----------DAVSDILAGF 542 (858)
T ss_pred HHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhcc-ch---hHHHHHHHHHHHHHhhcc----------hhHHHHHHHH
Confidence 333 44789999999999887544443211 11 233344455555444110 1222222111
Q ss_pred HHhH-------hhHHHHHhhhhhhcC---cchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChh--
Q 041545 276 VRLA-------LPPLLKIYSGAVDAG---DSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQ-- 343 (554)
Q Consensus 276 ~r~L-------lpal~~~~~~~~~~~---~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~-- 343 (554)
...+ +....+.|.. ++. ..-.+-++..|...|++-++ ++....+.+.++|++.|+...+. ...+
T Consensus 543 ~~~~~~kl~~~isv~~q~l~~--eD~~~~~elqSN~~~vl~aiir~~~~-~ie~v~D~lm~Lf~r~les~~~t-~~~~dV 618 (858)
T COG5215 543 YDYTSKKLDECISVLGQILAT--EDQLLVEELQSNYIGVLEAIIRTRRR-DIEDVEDQLMELFIRILESTKPT-TAFGDV 618 (858)
T ss_pred HHHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHhccCCc-hhhhHH
Confidence 2222 2222222221 111 11234678889999998777 78888899999999999886221 1111
Q ss_pred --hHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhh
Q 041545 344 --DIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKY 421 (554)
Q Consensus 344 --~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ 421 (554)
.|+.+-.++-+-|-.++ .+|-|+..|=. +. ....=+++-.+++.+++..|..=|.+|...
T Consensus 619 ~~aIsal~~sl~e~Fe~y~-----~~fiPyl~~al----n~---------~d~~v~~~avglvgdlantl~~df~~y~d~ 680 (858)
T COG5215 619 YTAISALSTSLEERFEQYA-----SKFIPYLTRAL----NC---------TDRFVLNSAVGLVGDLANTLGTDFNIYADV 680 (858)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHh----cc---------hhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 22222222222233332 45777766544 21 123445677999999999999999999999
Q ss_pred HHHHHHHHhhhhh
Q 041545 422 LLEGCVQHLTDAK 434 (554)
Q Consensus 422 ll~~~~~~L~~~~ 434 (554)
+....++-|....
T Consensus 681 ~ms~LvQ~lss~~ 693 (858)
T COG5215 681 LMSSLVQCLSSEA 693 (858)
T ss_pred HHHHHHHHhcChh
Confidence 9999998887753
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00018 Score=80.43 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=145.7
Q ss_pred ChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhcc-CC----CCccHhHHH
Q 041545 23 EICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDN-ST----GESNISLKL 97 (554)
Q Consensus 23 ~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~-~~----~~~~~~lrq 97 (554)
+...|--|-+-|.+=++..+. ...+.-+.....++..|...++. +. ...-.+|+.
T Consensus 514 qsNLR~AAYeALmElIk~st~--------------------~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNSTD--------------------DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQS 573 (859)
T ss_pred hhhHHHHHHHHHHHHHHcCcH--------------------HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHH
Confidence 357899999999988888663 34444455555677777776661 11 122334777
Q ss_pred HHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhh
Q 041545 98 TAVSTLEVLANRFASYDS-VFNLCLASVTNSISS-RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTY 175 (554)
Q Consensus 98 ~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~-~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~ 175 (554)
.--.+|..+-+++|++.+ .-..+|......+.+ .+.-+-+-++++++.++..||.+|.-|.|.|.|.++..++..+
T Consensus 574 ~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~-- 651 (859)
T KOG1241|consen 574 LLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ-- 651 (859)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch--
Confidence 777899999999999855 466778888887776 5566778999999999999999999999999999999886522
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhh
Q 041545 176 VDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQ 252 (554)
Q Consensus 176 ~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~ 252 (554)
.-.+..+++..++.+...+..-|.||-..++..+..+-.- +..|.+++..+-+++.-||-.++
T Consensus 652 -------------e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss-~~~hR~vKP~IlS~FgDIAlaIg 714 (859)
T KOG1241|consen 652 -------------EYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSS-PNLHRNVKPAILSVFGDIALAIG 714 (859)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccC-ccccccccchHHHHHHHHHHHHH
Confidence 2468999999999999999999999999999887332110 11255666666666677776665
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.24 E-value=0.0039 Score=71.52 Aligned_cols=272 Identities=15% Similarity=0.232 Sum_probs=171.6
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHh
Q 041545 90 ESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSR-NLALASSCLRTTGALVNVLGLKALAELPLIMENVRKK 168 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~-~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~ 168 (554)
.....+|+.|..+|+.+|...+. -.+..+...+.++++.. .....-..+-|+|++|+.-|-++-.|++++||.+.+.
T Consensus 185 s~R~aVrKkai~~l~~la~~~~~--~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y 262 (1233)
T KOG1824|consen 185 SPRLAVRKKAITALGHLASSCNR--DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADY 262 (1233)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHH
Confidence 33445899999999999998875 47888888888888653 3445567799999999999999999999999999996
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhc----cCCCCCC--C---------
Q 041545 169 SREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLC----PEYLPGS--D--------- 233 (554)
Q Consensus 169 l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~----~~~~~~~--~--------- 233 (554)
++..+ ..++++....+-+++.++..-|.-+.||.++|++.+.-. |.|..+. |
T Consensus 263 ~~~~e-------------~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~ 329 (1233)
T KOG1824|consen 263 CNKIE-------------EDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDE 329 (1233)
T ss_pred hcccc-------------cCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhcc
Confidence 65421 124678899999999999999999999999999886322 5553111 0
Q ss_pred ---h--------------hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcc
Q 041545 234 ---P--------------KLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDS 296 (554)
Q Consensus 234 ---~--------------~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~ 296 (554)
+ .+..++.+|-..+..+-+ .++++.+.+=|++...+++ ....
T Consensus 330 eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E------------------~L~~~~q~l~p~lI~RfkE---REEn 388 (1233)
T KOG1824|consen 330 EDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE------------------MLPDFYQTLGPALISRFKE---REEN 388 (1233)
T ss_pred ccchhccccccccchhHHHHHHHHHHHHHHHhccHH------------------HHHHHHHHhCHHHHHHHHH---Hhhh
Confidence 0 122233344344444433 3344466777777777754 1222
Q ss_pred hHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Q 041545 297 SLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSI 376 (554)
Q Consensus 297 ~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~ 376 (554)
.-...++..-..+++.++ .+.-+.+ -.+. |+ .....+...+-.+++ ++.|-.
T Consensus 389 Vk~dvf~~yi~ll~qt~~-~~~~~~d------~d~~--e~--~g~~s~~~~L~~~~~-----------------~iVkai 440 (1233)
T KOG1824|consen 389 VKADVFHAYIALLKQTRP-VIEVLAD------NDAM--EQ--GGTPSDLSMLSDQVP-----------------LIVKAI 440 (1233)
T ss_pred HHHHHHHHHHHHHHcCCC-CcccccC------chhh--hc--cCCccchHHHHhhhH-----------------HHHHHH
Confidence 233555555555555444 1111110 0000 00 111111121222221 111111
Q ss_pred hhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhh
Q 041545 377 EWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAK 434 (554)
Q Consensus 377 ~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~ 434 (554)
.--.. ++ +.+.|.-. |-++.++...+.+.-+++...++..+.-.|+|.+
T Consensus 441 ~~qlr--~k------s~kt~~~c-f~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkS 489 (1233)
T KOG1824|consen 441 QKQLR--EK------SVKTRQGC-FLLLTELINVLPGALAQHIPSLVPGIIYSLNDKS 489 (1233)
T ss_pred HHHHh--hc------cccchhhH-HHHHHHHHHhCcchhhhcccccchhhhhhcCCcc
Confidence 11111 11 23366555 7778999999999999999999999999999964
No 11
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.93 E-value=0.0003 Score=69.47 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCccHhHHHHHHHHHHHHHHHhCCC--CchHHHHHH----HHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHH
Q 041545 88 TGESNISLKLTAVSTLEVLANRFASY--DSVFNLCLA----SVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLI 161 (554)
Q Consensus 88 ~~~~~~~lrq~Al~~L~~lA~~~g~~--~~~~~~~L~----~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~i 161 (554)
+.+.+|+-|..|+..|..+.+...+. .+.+...+. .+...+++....|...++.|++.++..+|.++-||++.+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 36789999999999999999987222 335666665 455666666788999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Q 041545 162 MENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLG 208 (554)
Q Consensus 162 mP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~ 208 (554)
+|.+++.+.+ ....+..++..++..++++.+
T Consensus 96 l~~Ll~~~~~----------------~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 96 LPPLLKKLGD----------------SKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHGGG-------------------HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHcc----------------ccHHHHHHHHHHHHHHHHHCC
Confidence 9999996654 245678899999999999766
No 12
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.006 Score=73.00 Aligned_cols=357 Identities=13% Similarity=0.120 Sum_probs=222.1
Q ss_pred CChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHH
Q 041545 22 GEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVS 101 (554)
Q Consensus 22 ~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~ 101 (554)
++|.+==|=|.|-| ++..|.-|+--+=+++... ....+...|||.+++|.|-..== +.+..+++
T Consensus 953 ~qPdLVYKFM~LAn----h~A~wnSk~GaAfGf~~i~----~~a~~kl~p~l~kLIPrLyRY~y----DP~~~Vq~---- 1016 (1702)
T KOG0915|consen 953 GQPDLVYKFMQLAN----HNATWNSKKGAAFGFGAIA----KQAGEKLEPYLKKLIPRLYRYQY----DPDKKVQD---- 1016 (1702)
T ss_pred CChHHHHHHHHHhh----hhchhhcccchhhchHHHH----HHHHHhhhhHHHHhhHHHhhhcc----CCcHHHHH----
Confidence 44777778888887 5555543321111111111 11235567788888888876543 22333443
Q ss_pred HHHHHHHHhCCC-----CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHhhhhhhh-
Q 041545 102 TLEVLANRFASY-----DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKKSREIST- 174 (554)
Q Consensus 102 ~L~~lA~~~g~~-----~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~l~~~~~- 174 (554)
++..|=...-.+ +.++.+++......+++..|++|+++-+++.-+.++-.-. +.-.+|++-.+++....++.-
T Consensus 1017 aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs 1096 (1702)
T KOG0915|consen 1017 AMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES 1096 (1702)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443 4578889998888899999999999999999999885543 578888888888876665320
Q ss_pred ------------------hhhhhcc---------------cccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Q 041545 175 ------------------YVDVQNE---------------SNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITEL 221 (554)
Q Consensus 175 ------------------~~~~~~~---------------~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~ 221 (554)
+.+++.. +.+.....+++-.-+++++..++++-|..+-||.++++..
T Consensus 1097 VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ 1176 (1702)
T KOG0915|consen 1097 VREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPL 1176 (1702)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHH
Confidence 1111110 0111123345667788888999999999999999999988
Q ss_pred Hh-hccCCCCC--------CChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHH----HHhHhhHHHHHhh
Q 041545 222 LV-LCPEYLPG--------SDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHL----VRLALPPLLKIYS 288 (554)
Q Consensus 222 l~-l~~~~~~~--------~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~----~r~Llpal~~~~~ 288 (554)
+. ......+. ....-..+++..|...++.-| .=++..++|+++ ...++|-+.+.-.
T Consensus 1177 ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akssp-----------mmeTi~~ci~~iD~~vLeelip~l~el~R 1245 (1702)
T KOG0915|consen 1177 LLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSP-----------MMETINKCINYIDISVLEELIPRLTELVR 1245 (1702)
T ss_pred HHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCc-----------HHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 62 22222100 011223456666666666666 444444444422 7778999988886
Q ss_pred hhhhcC-cchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcc-c
Q 041545 289 GAVDAG-DSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTE-T 366 (554)
Q Consensus 289 ~~~~~~-~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE-~ 366 (554)
.-+.-| +..++.+...|. ...+. ...++...+++.|+..+.-|.. .+.-....++..+.|.+- .
T Consensus 1246 ~sVgl~Tkvg~A~fI~~L~---~r~~~-emtP~sgKll~al~~g~~dRNe----------sv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1246 GSVGLGTKVGCASFISLLV---QRLGS-EMTPYSGKLLRALFPGAKDRNE----------SVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred ccCCCCcchhHHHHHHHHH---HHhcc-ccCcchhHHHHHHhhccccccH----------HHHHHHHHHHHHHHhcCChH
Confidence 544222 222333333332 33555 6778999999999998877643 244445556666777665 6
Q ss_pred chhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHH
Q 041545 367 MFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQH 429 (554)
Q Consensus 367 tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~ 429 (554)
+|.-+..++..|-.... ...|.++ ++....|+.+-+.++-.|++-+++...=.
T Consensus 1312 q~qKLie~~l~~~l~k~---------es~~sis-catis~Ian~s~e~Lkn~asaILPLiFLa 1364 (1702)
T KOG0915|consen 1312 QMQKLIETLLADLLGKD---------ESLKSIS-CATISNIANYSQEMLKNYASAILPLIFLA 1364 (1702)
T ss_pred HHHHHHHHHHHHHhccC---------CCccchh-HHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 99999999999987532 2233455 55555577777777788888888776533
No 13
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.82 E-value=0.00013 Score=63.06 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhh
Q 041545 95 LKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~ 171 (554)
.|..++.+|..+|...|+. .+++..+++.+..++++.+++||-+|.-++..++++.+..++||++.+.+.+.+.+.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5788999999999999987 4479999999999999999999999999999999999999999999999999986654
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.60 E-value=0.25 Score=57.40 Aligned_cols=123 Identities=13% Similarity=0.165 Sum_probs=95.9
Q ss_pred hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHH
Q 041545 19 LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLT 98 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~ 98 (554)
|..+-.-||+||...|..=...-+ ...|..++..|..=+.+ ..+..--.|
T Consensus 183 l~s~R~aVrKkai~~l~~la~~~~---------------------------~~ly~~li~~Ll~~L~~---~~q~~~~rt 232 (1233)
T KOG1824|consen 183 LQSPRLAVRKKAITALGHLASSCN---------------------------RDLYVELIEHLLKGLSN---RTQMSATRT 232 (1233)
T ss_pred ccChHHHHHHHHHHHHHHHHHhcC---------------------------HHHHHHHHHHHHhccCC---CCchHHHHH
Confidence 456667899999999984443322 55677777777766664 345566778
Q ss_pred HHHHHHHHHHHhCCC-CchHHHHHHHHHHH---hcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhh
Q 041545 99 AVSTLEVLANRFASY-DSVFNLCLASVTNS---ISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 99 Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~---l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~ 171 (554)
.+.||..+++.-|++ ......+++.+.+. +..+++.+|+.++-++++..+-+...+.||-|.++-.+++.+.-
T Consensus 233 ~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisY 309 (1233)
T KOG1824|consen 233 YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISY 309 (1233)
T ss_pred HHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhcc
Confidence 899999999999987 33455556666554 46789999999999999999999999999999999999987764
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.0033 Score=68.73 Aligned_cols=193 Identities=15% Similarity=0.213 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhh
Q 041545 97 LTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTY 175 (554)
Q Consensus 97 q~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~ 175 (554)
.-.+.+++.++...|+. ..+.....|..+..+...+..+..+++-.+|.+++.+|.++.||--.+|..+.+.+....
T Consensus 616 ~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~-- 693 (858)
T COG5215 616 GDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEA-- 693 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChh--
Confidence 34566777777755543 235666667777777778899999999999999999999999999999999988776521
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCCh--hHHHHHHHHHHHHHhhhhH
Q 041545 176 VDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDP--KLKVKADAVRRLLTDKIQV 253 (554)
Q Consensus 176 ~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~--~~~s~~~~l~~~la~~v~~ 253 (554)
..-.+.-+++|.++.+.-.++.-|-|||+.|+..+..........+. ..+-+. .+++.+.
T Consensus 694 ------------~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~-~~~~~v~----- 755 (858)
T COG5215 694 ------------THRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRK-NAVQLVN----- 755 (858)
T ss_pred ------------hccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHH-HHHHHHH-----
Confidence 12236788999999999999999999999999886333332211111 111111 1111111
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhh---h--cCcchHH-HHHHHHHHHHHhcCCCccc
Q 041545 254 IVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAV---D--AGDSSLV-IAFEILGNIISRMDRSSIG 318 (554)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~---~--~~~~~l~-~ll~~L~~~i~~~~~~~i~ 318 (554)
+.-+++-...++- +|.++|-+...+..+- + ++..+.. ..+.++.....--++.++.
T Consensus 756 -----~ayVgI~~~~~nr----~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk 817 (858)
T COG5215 756 -----CAYVGIGDSSKNR----VRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELK 817 (858)
T ss_pred -----HHHHHhhhhhhhh----HHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchh
Confidence 1122233333344 8889998888886533 2 2333444 7778888888877776543
No 16
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.41 Score=55.87 Aligned_cols=279 Identities=16% Similarity=0.191 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhc---hhhhchhhHHHHHHHHhh
Q 041545 95 LKLTAVSTLEVLA-NRFASYDSVFNLCLASVTNSIS-SRNLALASSCLRTTGALVNVLG---LKALAELPLIMENVRKKS 169 (554)
Q Consensus 95 lrq~Al~~L~~lA-~~~g~~~~~~~~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vLg---~~~iP~LP~imP~ll~~l 169 (554)
||..|...+..++ ..|. +...+..++..+..|+. +.+-+|+.-|.+++-.+.+.+. +++-||+|.+|..+++..
T Consensus 478 Lrarac~vl~~~~~~df~-d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFK-DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 8999999888888 5664 33479999999999987 6789999999999999999888 559999999999999977
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhh--ccCC------CCCCChhHHHHHH
Q 041545 170 REISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVL--CPEY------LPGSDPKLKVKAD 241 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l--~~~~------~~~~~~~~~s~~~ 241 (554)
++.+ .+ -.-..++++|...+.-++||=.++.+.+.. .-.. .++.++.- ..+.
T Consensus 557 ne~E-----------nd--------~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~-iaA~ 616 (1010)
T KOG1991|consen 557 NEVE-----------ND--------DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKA-IAAS 616 (1010)
T ss_pred Hhcc-----------hh--------HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHH-HHHH
Confidence 7632 11 122467899999999999999998877621 1111 11111111 2233
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccch
Q 041545 242 AVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFH 321 (554)
Q Consensus 242 ~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~ 321 (554)
.+.+++.+-+. ++.-+..+.+ .+--+++|.+..+..+ +......++++++..+.-. .| .++...
T Consensus 617 GiL~Ti~Til~--------s~e~~p~vl~---~le~~~l~vi~~iL~~---~i~dfyeE~~ei~~~~t~~-~~-~Isp~m 680 (1010)
T KOG1991|consen 617 GILRTISTILL--------SLENHPEVLK---QLEPIVLPVIGFILKN---DITDFYEELLEIVSSLTFL-SK-EISPIM 680 (1010)
T ss_pred HHHHHHHHHHH--------HHhccHHHHH---HHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhhhh-hc-ccCHHH
Confidence 44455554443 1111111100 0022223333333321 1112222344443332221 11 233333
Q ss_pred HHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcc------cch--hhHH----HHHHhhhhhcccccccc
Q 041545 322 GKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTE------TMF--RPLF----IRSIEWAESDVEDIGSM 389 (554)
Q Consensus 322 ~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE------~tF--rPLf----~kl~~WA~~~~~~~~~~ 389 (554)
=.++...+++|..- .++-|.++..-|+. .+| +|.+ ..++.-..++..
T Consensus 681 W~ll~li~e~~~~~----------------~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~----- 739 (1010)
T KOG1991|consen 681 WGLLELILEVFQDD----------------GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSEN----- 739 (1010)
T ss_pred HHHHHHHHHHHhhh----------------hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCC-----
Confidence 34444444443221 13334444333332 111 2211 112222222111
Q ss_pred ccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhh
Q 041545 390 KSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDA 433 (554)
Q Consensus 390 ~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~ 433 (554)
....++..+ ++++..++=++|++.-.|-..+++.+...|+..
T Consensus 740 -~~D~d~~~a-~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~ 781 (1010)
T KOG1991|consen 740 -GEDSDCESA-CKLLEVIILNCKGLLDQYIPLFLELALSRLTRE 781 (1010)
T ss_pred -CchHHHHHH-HHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhcc
Confidence 123456555 999999999999999999999999999888874
No 17
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.1 Score=57.92 Aligned_cols=134 Identities=11% Similarity=0.111 Sum_probs=97.7
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 041545 67 DSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGAL 146 (554)
Q Consensus 67 ~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l 146 (554)
..-.||+.+++|.+..-+. +-...+|+.|..+.+.+-+.+... .....++..+..+....|+-...++-.+|.|
T Consensus 208 ~~~EPyiv~~lp~il~~~~----d~~~~Vr~Aa~~a~kai~~~~~~~--aVK~llpsll~~l~~~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFG----DKINKVREAAVEAAKAIMRCLSAY--AVKLLLPSLLGSLLEAKWRTKMASLELLGAM 281 (569)
T ss_pred CCCCchHHhhHHHHHHHhh----ccchhhhHHHHHHHHHHHHhcCcc--hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 3446777777777666553 224569999999999999999753 3555667776666555899999999999999
Q ss_pred HHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHH
Q 041545 147 VNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-LNPYLGDITELL 222 (554)
Q Consensus 147 ~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-lsPYL~~il~~l 222 (554)
+.+-....--++|.++|.+.+.+.+. ..++..++..++.++......- +.||++.++.++
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT----------------~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l 342 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDT----------------KPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL 342 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccC----------------CHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99888888999999999999977652 2345566666665554444422 667777777774
No 18
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.17 Score=58.33 Aligned_cols=306 Identities=14% Similarity=0.089 Sum_probs=176.2
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSR 170 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~ 170 (554)
+..+-.|+.+.++.++..+|. +| ++...++.+.+++.+ ....+.++..+-.+|+.|..+.-||.-.+|..+=+.+.
T Consensus 522 n~ql~~Tss~~igs~s~~l~e-~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~ 598 (982)
T KOG2022|consen 522 NPQLLSTSSDLIGSLSNWLGE-HPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLN 598 (982)
T ss_pred ChhHHHHHHHHHHHHHHHHhc-CCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhc
Confidence 556889999999999999986 66 788999999999853 44456777889999999999999999999988777665
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHh-cccccccHHHHHHHHh--hccCCCCCCC-hhHHHHHH-----
Q 041545 171 EISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL-GGFLNPYLGDITELLV--LCPEYLPGSD-PKLKVKAD----- 241 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l-~~FlsPYL~~il~~l~--l~~~~~~~~~-~~~~s~~~----- 241 (554)
...+ .++ ....++.+++-++..+ |.-+-.||-.++..+. +-+.++++.+ ....-|+.
T Consensus 599 ~~~~-----------~~S---~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~ 664 (982)
T KOG2022|consen 599 KSNA-----------KDS---DRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNT 664 (982)
T ss_pred cccc-----------Cch---HHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 5221 111 2233333443333333 3444566666665541 1122233322 22222222
Q ss_pred --HHHHHHHhhhhHHH-HHHH-HhhhhhH-HHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCc
Q 041545 242 --AVRRLLTDKIQVIV-LIKM-LVIDFDL-KFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSS 316 (554)
Q Consensus 242 --~l~~~la~~v~~~~-~~~~-~~~~~~~-~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~ 316 (554)
++.+.+....|+.+ -+.. -..|+.+ ++. .+...++|.+.+..+-. ......+...|.++...+.....+.
T Consensus 665 iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il----~v~~k~i~~~~kv~s~~-~~~s~vve~~C~i~~~~v~~~~~sF 739 (982)
T KOG2022|consen 665 ISALFTSLINKKDIIDTDQPEQREEPFQQFPIL----QVLQKAIPVFEKVLSMW-LGLSDVVEASCIIMVKGVRSLLTSF 739 (982)
T ss_pred HHHHHhccCCCCccccccchhhhccccccCCHH----HHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHhccccccccc
Confidence 22222222222111 0000 0011100 121 22444555444433321 2344567777888887788888874
Q ss_pred cccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhc----cccccccccc
Q 041545 317 IGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESD----VEDIGSMKSK 392 (554)
Q Consensus 317 i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~----~~~~~~~~~~ 392 (554)
...+.+.++.|+.. +--+.. ....+ ++ +.-++.|..+..-+|+.-..++-++.. .++..- ..
T Consensus 740 ~~p~l~~l~~Fi~r-~~~~~~--a~tl~-------l~--~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f--~n 805 (982)
T KOG2022|consen 740 PEPMLPSLCPFIVR-FLTSCL--AVTLS-------LI--AACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPF--SN 805 (982)
T ss_pred hhhhHHHHHHHHHH-hccchH--HHHHH-------HH--HHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCC--CC
Confidence 47899999999988 444332 11111 12 334567777766666665555544332 111110 13
Q ss_pred cchhHHHHHHHHHHHHHhcchhhcc----chhhHHHHHHHHhhhh
Q 041545 393 SIDRAIVFYSLVNKLAESHRSLFVP----YFKYLLEGCVQHLTDA 433 (554)
Q Consensus 393 ~~~R~itfy~l~~~l~e~LKslftp----y~~~ll~~~~~~L~~~ 433 (554)
..|=...||+|++.+..+..+++-+ |.+.++.-+..+|+.-
T Consensus 806 ~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~p 850 (982)
T KOG2022|consen 806 QPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSP 850 (982)
T ss_pred CchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCC
Confidence 4567789999999999999999887 4455554555666553
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.12 E-value=0.48 Score=52.37 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhcc-cchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHh
Q 041545 352 VISTVISLTMKLTE-TMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHL 430 (554)
Q Consensus 352 vi~a~~~lVlKLsE-~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L 430 (554)
+-...+++++++.+ ..+..++..+..++... . ...-|.-. .+-...++++. .+-+...++.+.++|
T Consensus 320 Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~-~-------d~~~~~~~-i~~I~~la~~~----~~~~~~~v~~l~~ll 386 (526)
T PF01602_consen 320 IRKKALDLLYKLANESNVKEILDELLKYLSEL-S-------DPDFRREL-IKAIGDLAEKF----PPDAEWYVDTLLKLL 386 (526)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC----------HHHHHHH-HHHHHHHHHHH----GSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHhc-c-------chhhhhhH-HHHHHHHHhcc----CchHHHHHHHHHHhh
Confidence 44456666666655 77888888888887321 0 11133233 33344455554 777778888888888
Q ss_pred hhh
Q 041545 431 TDA 433 (554)
Q Consensus 431 ~~~ 433 (554)
...
T Consensus 387 ~~~ 389 (526)
T PF01602_consen 387 EIS 389 (526)
T ss_dssp HCT
T ss_pred hhc
Confidence 764
No 20
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.03 E-value=0.0048 Score=53.33 Aligned_cols=93 Identities=22% Similarity=0.207 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccH
Q 041545 136 ASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYL 215 (554)
Q Consensus 136 ~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL 215 (554)
|-.++.++++++-.+|..+-+|++.|+|+++..+.+ .+..+...++-+|..+.+..+.-+.||.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D----------------~d~rVRy~AcEaL~ni~k~~~~~~l~~f 66 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDD----------------QDSRVRYYACEALYNISKVARGEILPYF 66 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999997654 2456899999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCChhHHHHHHHHHHHH
Q 041545 216 GDITELLVLCPEYLPGSDPKLKVKADAVRRLL 247 (554)
Q Consensus 216 ~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~l 247 (554)
.+|...+.... .+.++++++.+..+-+++
T Consensus 67 ~~IF~~L~kl~---~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 67 NEIFDALCKLS---ADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHH---cCCchhHHHHHHHHHHHh
Confidence 99999873321 233566666665554433
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.99 E-value=0.059 Score=53.03 Aligned_cols=159 Identities=14% Similarity=0.187 Sum_probs=93.0
Q ss_pred hcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHH
Q 041545 20 FNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTA 99 (554)
Q Consensus 20 ~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~A 99 (554)
.+.+=..|..||.-|..=+..+.. .. .-+.-.+.+..++..+...+. +....+.++|
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~--~~-----------------~~~~~~~~l~~~~~~i~~~l~----d~Rs~v~~~A 73 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAP--ED-----------------FPPDFVECLRQLLDAIIKQLS----DLRSKVSKTA 73 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------------------------HHHHHHHH---HHHHH-S-----HH---HHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCc--cc-----------------cHHHHHHHHHHhHHHHHHHHh----hhHHHHHHHH
Confidence 556678888999988877766511 00 001112222223333333333 3345589999
Q ss_pred HHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHH-HHHHhhhhhhhhhh
Q 041545 100 VSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIME-NVRKKSREISTYVD 177 (554)
Q Consensus 100 l~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP-~ll~~l~~~~~~~~ 177 (554)
..+++.++..+|.. .|.+..+++.+.+.+++....++.++..|+..|+..++ +.|+++. .+...+++
T Consensus 74 ~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~------ 142 (228)
T PF12348_consen 74 CQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKS------ 142 (228)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhC------
Confidence 99999999999987 55778889999999998889999999999999999765 5566633 33332222
Q ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHhc---ccccc--cHHHHHHHH
Q 041545 178 VQNESNEDKTQRESLMASVLITLEAVIDKLG---GFLNP--YLGDITELL 222 (554)
Q Consensus 178 ~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~---~FlsP--YL~~il~~l 222 (554)
.+..+-..++..+..+++..| ..+.+ +++.+...+
T Consensus 143 ----------Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l 182 (228)
T PF12348_consen 143 ----------KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKAL 182 (228)
T ss_dssp ----------S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHH
Confidence 234566778888888888888 44442 235555544
No 22
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.11 Score=61.48 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=146.9
Q ss_pred hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHH
Q 041545 19 LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLT 98 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~ 98 (554)
.++....+|+|+-++|.+=++- ++. . .+ ...+...++..|..-.+ +.....|..
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~-~s~---------------~---~~---~~q~i~~I~n~L~ds~q----s~~~~~~~~ 716 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSS-PSG---------------E---GL---VEQRIDDIFNSLLDSFQ----SSSSPAQAS 716 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcC-Cch---------------h---hH---HHHHHHHHHHHHHHHHh----ccchHHHHH
Confidence 3455899999999999865544 210 0 01 11222223333333333 334458999
Q ss_pred HHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH---HhchhhhchhhHHHHHHHHhhhhhhh
Q 041545 99 AVSTLEVLANRFASYDSV-FNLCLASVTNSISSRNLALASSCLRTTGALVN---VLGLKALAELPLIMENVRKKSREIST 174 (554)
Q Consensus 99 Al~~L~~lA~~~g~~~~~-~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~---vLg~~~iP~LP~imP~ll~~l~~~~~ 174 (554)
++.||..|-+..+.++-. ....++-++=++...+...|.+++-||-.|++ .+-..-=| -+.++...+..+....
T Consensus 717 rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isagl- 794 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISAGL- 794 (1176)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHhhh-
Confidence 999999999999965432 23344444333355566677777777777774 22222122 1122222222222110
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhH
Q 041545 175 YVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN-PYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQV 253 (554)
Q Consensus 175 ~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls-PYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~ 253 (554)
.++ ...+..+-+.++..++.....+++ ++++.++..+..+- .+++.+.+++++..+ +.+...+|
T Consensus 795 --------~gd---~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L--~s~sreI~kaAI~fi-kvlv~~~p- 859 (1176)
T KOG1248|consen 795 --------VGD---STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYL--ASNSREIAKAAIGFI-KVLVYKFP- 859 (1176)
T ss_pred --------ccc---HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHH-HHHHHcCC-
Confidence 001 112233338889999999999999 99999998874331 133344666666666 66666777
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhh
Q 041545 254 IVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALD 333 (554)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd 333 (554)
. .++......|||.++. |.+ +.........-.+|+..|.+.|...+.++.+....-.|+=..
T Consensus 860 -----------e----~~l~~~~~~LL~sll~-ls~--d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIR 921 (1176)
T KOG1248|consen 860 -----------E----ECLSPHLEELLPSLLA-LSH--DHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIR 921 (1176)
T ss_pred -----------H----HHHhhhHHHHHHHHHH-HHH--hhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHH
Confidence 1 1111116668888888 643 112223335667788888999998888888866655555444
Q ss_pred h
Q 041545 334 L 334 (554)
Q Consensus 334 ~ 334 (554)
.
T Consensus 922 K 922 (1176)
T KOG1248|consen 922 K 922 (1176)
T ss_pred H
Confidence 4
No 23
>PTZ00429 beta-adaptin; Provisional
Probab=96.94 E-value=0.066 Score=62.13 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhh-HHHHHHHHhhhhhhhhhhhh
Q 041545 101 STLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELP-LIMENVRKKSREISTYVDVQ 179 (554)
Q Consensus 101 ~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP-~imP~ll~~l~~~~~~~~~~ 179 (554)
..|+.+++--+.++.....++..+...+++.++.|+-+++-++-.+...+.+..+.... ++.++++..+.
T Consensus 238 ~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s--------- 308 (746)
T PTZ00429 238 YILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR--------- 308 (746)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC---------
Confidence 55666665444444567788888888898888888877777777665444333333222 22233333211
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHH
Q 041545 180 NESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGD 217 (554)
Q Consensus 180 ~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~ 217 (554)
++.+++..++..+..++..-|..|.||+..
T Consensus 309 --------s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~ 338 (746)
T PTZ00429 309 --------RDAETQYIVCKNIHALLVIFPNLLRTNLDS 338 (746)
T ss_pred --------CCccHHHHHHHHHHHHHHHCHHHHHHHHHh
Confidence 123467778878888888888888877543
No 24
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.84 E-value=0.013 Score=51.46 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISS--RNLALASSCLRTTGALV 147 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~--~~~~l~~sallcl~~l~ 147 (554)
.++|+.++..+...+.......+...|..++.+++.+.+..|+ ......|.+..+++. +.+.++..++-||..++
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~---~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi 82 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGS---HISSARPQIMACLQSALEIPELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 6899999999999998655577888999999999999994443 445555555554432 34589999999999999
Q ss_pred HHhchh-hhchhhHHHHHHHHhhh
Q 041545 148 NVLGLK-ALAELPLIMENVRKKSR 170 (554)
Q Consensus 148 ~vLg~~-~iP~LP~imP~ll~~l~ 170 (554)
+.+++. ..|+++.++-.++..++
T Consensus 83 ~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 83 KTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHCCHHHHHHHHHHHHHHHHHhcc
Confidence 999987 47888888887776553
No 25
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.82 E-value=0.071 Score=50.97 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=88.4
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhh
Q 041545 93 ISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~ 172 (554)
..+|..++.+++-++.+|+. .+...++.+..++.++++.||..++.+++.|... +++..=+.++..++..+.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~---~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D- 74 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN---LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVD- 74 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH---HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcC-
Confidence 46899999999999999974 6667788899999999999999999999999864 5555556666666664432
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH-hcccccccHHHHHHHH
Q 041545 173 STYVDVQNESNEDKTQRESLMASVLITLEAVIDK-LGGFLNPYLGDITELL 222 (554)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~-l~~FlsPYL~~il~~l 222 (554)
.+..+...+..++..+... -|..+..++.+++..+
T Consensus 75 ---------------~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 75 ---------------ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 2456788888999999888 8888999999999886
No 26
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=1.4 Score=49.24 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=97.4
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
++..|...++ +......|..++.+........|+. .|++.++++.+..+.++....+|..+.-+.-++.+++-+..
T Consensus 175 ~l~~l~~ai~---dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a 251 (569)
T KOG1242|consen 175 FLDNLSKAII---DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA 251 (569)
T ss_pred HHHHHHHHhc---ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch
Confidence 5555666665 3444456778999999999999976 67999999999999998899999999999999999998887
Q ss_pred hchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 155 LAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 155 iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
++ .++|.++..+... . + .-..+++..++.+.+.-|.-++-++++++..+
T Consensus 252 VK---~llpsll~~l~~~---k------------W-rtK~aslellg~m~~~ap~qLs~~lp~iiP~l 300 (569)
T KOG1242|consen 252 VK---LLLPSLLGSLLEA---K------------W-RTKMASLELLGAMADCAPKQLSLCLPDLIPVL 300 (569)
T ss_pred hh---HhhhhhHHHHHHH---h------------h-hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHH
Confidence 64 4556666544431 1 1 13467788888999999988888888888775
No 27
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.61 E-value=0.035 Score=59.79 Aligned_cols=159 Identities=17% Similarity=0.247 Sum_probs=113.5
Q ss_pred hhhHHhhhc-CChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCc
Q 041545 13 VNLYASLFN-GEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGES 91 (554)
Q Consensus 13 ~~~~~ll~~-~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~ 91 (554)
..+|+-|.. .+...|+-||++|.+-++.... -.|....--+..+++...+..
T Consensus 332 ~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---------------------------~l~DstE~ai~K~Leaa~ds~ 384 (516)
T KOG2956|consen 332 LLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---------------------------RLFDSTEIAICKVLEAAKDSQ 384 (516)
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHhchH---------------------------hhhchHHHHHHHHHHHHhCCc
Confidence 345665655 7788899999999988876542 223334444555565544566
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKKSR 170 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~l~ 170 (554)
+...+-++-+|+.++|.-.|-. ++..+..+|...|.+....++-++..+++.+..+ ..+.+|.++|.+++..+
T Consensus 385 ~~v~~~Aeed~~~~las~~P~~------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~ 458 (516)
T KOG2956|consen 385 DEVMRVAEEDCLTTLASHLPLQ------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYD 458 (516)
T ss_pred hhHHHHHHHHHHHHHHhhCchh------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhc
Confidence 6678888889999998877631 2333334444466666677777999999998877 58999999999999665
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc-ccccccHHHHHH
Q 041545 171 EISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLG-GFLNPYLGDITE 220 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~-~FlsPYL~~il~ 220 (554)
..+ ..+--+++=+|-+++..+| .-|.|||+.+-.
T Consensus 459 S~S----------------S~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 459 STS----------------STVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred Cch----------------HHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 422 2355677778889999999 889999998754
No 28
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.59 E-value=0.42 Score=52.33 Aligned_cols=317 Identities=15% Similarity=0.219 Sum_probs=176.0
Q ss_pred cCccch-HHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cC-CChhHHHH
Q 041545 65 LDDSAF-ESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSI----SS-RNLALASS 138 (554)
Q Consensus 65 ~~~~~~-~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l----~~-~~~~l~~s 138 (554)
|...+. |+...++..|..+++..+..|+.-+=++-|-.+..+.+... |....+++..++.+ .+ +++.--..
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~---p~~~~il~~L~~il~~v~kNPsnP~FnHy 91 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDIL---PIAVEILQHLTAILKEVSKNPSNPRFNHY 91 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTG---GGHHHHHHHHHHHHHHHHTS---HHHHHH
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHhCCCCcchhhh
Confidence 344444 67788999999999865444444455565555555444443 55666666655443 23 46777788
Q ss_pred HHHHHHHHHHHhchh---hh-chhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc-ccccc
Q 041545 139 CLRTTGALVNVLGLK---AL-AELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLG-GFLNP 213 (554)
Q Consensus 139 allcl~~l~~vLg~~---~i-P~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~-~FlsP 213 (554)
.+=++|.+++..... ++ .+=+.++|.+..+|++.- .+..--++-.++.+++.-| .-+.+
T Consensus 92 lFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV----------------~EF~PYvfQIla~Lle~~~~~~~p~ 155 (435)
T PF03378_consen 92 LFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV----------------QEFIPYVFQILAQLLELRPSSPLPD 155 (435)
T ss_dssp HHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-----------------TTTHHHHHHHHHHHHHHSS--S--T
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHcCCCCCCcH
Confidence 999999999975532 22 345677777777776521 1234445556666777766 55555
Q ss_pred cHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhc
Q 041545 214 YLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDA 293 (554)
Q Consensus 214 YL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~ 293 (554)
.-..++..+ ++|..-.. ..++ ..+..+.+..-++-| ..+ +..--+.++.+.++.++..
T Consensus 156 ~y~~L~~~L-l~p~lWe~-~gni-PalvrLL~a~i~k~~-----------------~~i--~~~~~l~~iLgvFQkLi~s 213 (435)
T PF03378_consen 156 AYKQLFPPL-LSPALWER-RGNI-PALVRLLQAYIKKDP-----------------SFI--VANNQLEPILGVFQKLIAS 213 (435)
T ss_dssp TTGGGHHHH-TSGGGGGS-TTTH-HHHHHHHHHHHHHHG-----------------GG------S-CHHHHHHHHHHHT-
T ss_pred HHHHHHHHH-cCcchhcc-CCCc-CcHHHHHHHHHHhCc-----------------hhh--cchhhHHHHHHHHHHHHCC
Confidence 555555553 44443221 1122 233334344444444 000 0122367888999887754
Q ss_pred CcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccCh-----hhHHHHHHHHHHHHHHHHHhhcccch
Q 041545 294 GDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSI-----QDIDIVEKSVISTVISLTMKLTETMF 368 (554)
Q Consensus 294 ~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~-----~~i~~vE~~vi~a~~~lVlKLsE~tF 368 (554)
...+. .-|++|...+..++.+.+.++.+.++..+++=|...+...+.. -.+-.+-. =.+.+++.+-+.-..-|
T Consensus 214 k~~D~-~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~-g~~~li~~id~IQ~glF 291 (435)
T PF03378_consen 214 KANDH-YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY-GPDFLIQTIDSIQPGLF 291 (435)
T ss_dssp TTCHH-HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH--HHHHHHHHHTTSTTHH
T ss_pred CCcch-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHhcCCcH
Confidence 44333 4468999999999999999999999999999665432211000 00000000 12335555666666788
Q ss_pred hhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhcc---chhhHHHHHHHHhhh
Q 041545 369 RPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVP---YFKYLLEGCVQHLTD 432 (554)
Q Consensus 369 rPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftp---y~~~ll~~~~~~L~~ 432 (554)
.+++.++ |.- +..+.. +..+|.+...++..=+.+. ..+... .++.+++..++++..
T Consensus 292 ~~il~~v--~lp-~~~k~~----~~~erKi~~vGltkLL~es-~~~~~~~~~~w~~ll~~Ll~ll~~ 350 (435)
T PF03378_consen 292 GMILEKV--WLP-DLQKVS----GPIERKICAVGLTKLLCES-PAFLSEYSQLWPPLLEALLKLLER 350 (435)
T ss_dssp HHHHHHT--HHH-HGGG------SHHHHHHHHHHHHHHHHSS-TTHHHH-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--hcC-chhhcC----CcchhhHHHHHHHHHHhcc-HhhhhHHHHHHHHHHHHHHHHHcC
Confidence 8888888 432 233323 5689999999977766653 444334 455555555565555
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.37 E-value=1.8 Score=47.92 Aligned_cols=168 Identities=16% Similarity=0.211 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 041545 191 SLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLL 270 (554)
Q Consensus 191 ~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~ 270 (554)
.+...++.++..+.+..+.....|++-++..+.....+ ........+++.+. +.| +
T Consensus 355 ~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~------~~~~~~~~i~~ll~-~~~-----------------~ 410 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDY------VSNEIINVIRDLLS-NNP-----------------E 410 (526)
T ss_dssp HHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGG------CHCHHHHHHHHHHH-HST-----------------T
T ss_pred hhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhcccc------ccchHHHHHHHHhh-cCh-----------------h
Confidence 37778888888888888888888888777776332222 12223445544443 344 0
Q ss_pred HHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHH
Q 041545 271 FILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEK 350 (554)
Q Consensus 271 ~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~ 350 (554)
. -...+..+.+.... ...+......+-++++-....+. .. ....+.+.+..-+- ++-..+..
T Consensus 411 ~----~~~~l~~L~~~l~~--~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~---------~~~~~vk~ 472 (526)
T PF01602_consen 411 L----REKILKKLIELLED--ISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFI---------EESPEVKL 472 (526)
T ss_dssp T----HHHHHHHHHHHHTS--SSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHT---------TSHHHHHH
T ss_pred h----hHHHHHHHHHHHHH--hhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhc---------cccHHHHH
Confidence 0 12234444444433 12223344555666665555544 12 44555555554321 12345788
Q ss_pred HHHHHHHHHHHhhcccchh-hHHHHHHhhhhhccccccccccccchhHHHHHHHHH
Q 041545 351 SVISTVISLTMKLTETMFR-PLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVN 405 (554)
Q Consensus 351 ~vi~a~~~lVlKLsE~tFr-PLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~ 405 (554)
.++.+++.+..+-.+..-+ .++..+..++..+..+ ..-.+|+.=++++++
T Consensus 473 ~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~-----~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 473 QILTALAKLFKRNPENEVQNEILQFLLSLATEDSSD-----PEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SS-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHHc
Confidence 8999999999888765444 6666777777621111 256799877777664
No 30
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.37 E-value=0.21 Score=56.66 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=114.6
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
|.-.|+|--..|+.--..|+- ++-++++. -.+.-....+|-.|...++.- .-+
T Consensus 888 ltPILknrheKVqen~IdLvg-~IadrgpE----------------------~v~aREWMRIcfeLlelLkah----kK~ 940 (1172)
T KOG0213|consen 888 LTPILKNRHEKVQENCIDLVG-TIADRGPE----------------------YVSAREWMRICFELLELLKAH----KKE 940 (1172)
T ss_pred chHhhhhhHHHHHHHHHHHHH-HHHhcCcc----------------------cCCHHHHHHHHHHHHHHHHHH----HHH
Confidence 444788888888887777664 44444431 223445677888888888832 456
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhh
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIST 174 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~ 174 (554)
+|..|..+++-||++.|+. ++|+.....+...+...|.|+-+++|.+++.||+= .++|.+++--..
T Consensus 941 iRRaa~nTfG~IakaIGPq-----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF------tVLPalmneYrt--- 1006 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKAIGPQ-----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF------TVLPALMNEYRT--- 1006 (1172)
T ss_pred HHHHHHhhhhHHHHhcCHH-----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch------hhhHHHHhhccC---
Confidence 9999999999999999972 45777777787778889999999999999999964 456666652211
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 175 YVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 175 ~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
-...+|++++-+++-+|+.++.+=-.|+-.++-.+
T Consensus 1007 -------------Pe~nVQnGVLkalsf~FeyigemskdYiyav~Pll 1041 (1172)
T KOG0213|consen 1007 -------------PEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLL 1041 (1172)
T ss_pred -------------chhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHH
Confidence 23458999999999999999987777777776654
No 31
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.22 E-value=1.1 Score=45.59 Aligned_cols=242 Identities=14% Similarity=0.132 Sum_probs=147.3
Q ss_pred HhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHH
Q 041545 17 ASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLK 96 (554)
Q Consensus 17 ~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lr 96 (554)
.-|.++++.+|.||+++|.+-|...+.. .+.+.++..+.. |.... =+|...-
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-------------------~L~~~ev~~L~~-------F~~~r--l~D~~~~ 57 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD-------------------FLSRQEVQVLLD-------FFCSR--LDDHACV 57 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh-------------------hccHHHHHHHHH-------HHHHH--hccHhhH
Confidence 3577899999999999999988886631 233333333333 22211 1233445
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhh
Q 041545 97 LTAVSTLEVLANRFASYDSVFNLCLASVTNSIS--SRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIST 174 (554)
Q Consensus 97 q~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~--~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~ 174 (554)
+.|+.++..+.+.-.-.......++..+.+... +-....|-..+..+-.+.+......-..=+.++..+++..+-
T Consensus 58 ~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g--- 134 (262)
T PF14500_consen 58 QPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG--- 134 (262)
T ss_pred HHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc---
Confidence 555888888884322112246666666665432 234566778888888888877665533345555555553321
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhc-cC-CCCCC-Ch---hHHHHHHHHHHHHH
Q 041545 175 YVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLC-PE-YLPGS-DP---KLKVKADAVRRLLT 248 (554)
Q Consensus 175 ~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~-~~-~~~~~-~~---~~~s~~~~l~~~la 248 (554)
+. +..-++=++..+..+....+ +.++.+++...+..+ |- +.+.. |+ ..+.-..+++++++
T Consensus 135 ----------Ek--DPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~ 200 (262)
T PF14500_consen 135 ----------EK--DPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS 200 (262)
T ss_pred ----------CC--CHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc
Confidence 22 33445666777777777777 389999998886332 32 11111 22 22334445555555
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHH
Q 041545 249 DKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQC 328 (554)
Q Consensus 249 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~ 328 (554)
. -| .++...+|.+.+...+ ....+-...++.|..|+.+-|...+..|...+.+-+
T Consensus 201 s-~~---------------------~fa~~~~p~LleKL~s---~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 201 S-TP---------------------LFAPFAFPLLLEKLDS---TSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred C-cH---------------------hhHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 2 22 1267788888888864 233344578899999999999988888888877643
No 32
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.19 E-value=0.02 Score=54.96 Aligned_cols=91 Identities=16% Similarity=0.254 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-hchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHH
Q 041545 116 VFNLCLASVTNSISSRNLALASSCLRTTGALVNV-LGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMA 194 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~v-Lg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~ 194 (554)
.+...|+...+++...+.+-+--|...+..|... -|.+++|.+|++++++-..|.. .+..+..
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t----------------r~~~V~~ 98 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT----------------RDPEVFC 98 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC----------------CCHHHHH
Confidence 4778899999999888888888899999999999 8889999999999999998775 2345788
Q ss_pred HHHHHHHHH---HHHhcccccccHHHHHHHH
Q 041545 195 SVLITLEAV---IDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 195 s~lsaL~~l---v~~l~~FlsPYL~~il~~l 222 (554)
+++.+|+.+ -+..|..+.||+.+++..+
T Consensus 99 ~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 99 ATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 888888888 7778889999999999887
No 33
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.06 E-value=0.084 Score=46.45 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISS--RNLALASSCLRTTGALV 147 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~--~~~~l~~sallcl~~l~ 147 (554)
.++|+.++..+...+..........-|..++.+++.+.+..|+ .....+|.+..|+++ +.+.++..++-||..++
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~---~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i 82 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGK---HISSALPQIMACLQSALEIPELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 6899999999999998655444666799999999999998774 444445554444432 45779999999999999
Q ss_pred HHhchhh-hchhhHHHHHHHH
Q 041545 148 NVLGLKA-LAELPLIMENVRK 167 (554)
Q Consensus 148 ~vLg~~~-iP~LP~imP~ll~ 167 (554)
+.+.+.- .|.+-.++..++.
T Consensus 83 ~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 83 KTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HhCCHHHHHHHHHHHHHHHHH
Confidence 9999853 4555555555544
No 34
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.03 E-value=0.059 Score=58.48 Aligned_cols=125 Identities=15% Similarity=0.226 Sum_probs=98.6
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhC--------CC------CchHHHHHHHHHHHhcCCChhHHHHHHH
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFA--------SY------DSVFNLCLASVTNSISSRNLALASSCLR 141 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g--------~~------~~~~~~~L~~v~~~l~~~~~~l~~sall 141 (554)
+...|..++. +..+.+.|..+++.+..-.. .. ...|..++|.+++.....+...+..-+.
T Consensus 272 ~~~~L~~lL~------~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 272 LLDKLLELLS------SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHhC------ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 4444444444 24578888888888877522 11 2268899999999988766668889999
Q ss_pred HHHHHHHHhchhh-hchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHH
Q 041545 142 TTGALVNVLGLKA-LAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITE 220 (554)
Q Consensus 142 cl~~l~~vLg~~~-iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~ 220 (554)
+++.+.+..-... .|++|+++|-+++.+.-. +..+..+++.++..+++.-|..+.+|+..++.
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~----------------~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~ 409 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP----------------DADVLLSSLETLKMILEEAPELISEHLSSLIP 409 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 9999999888775 999999999999988531 23488999999999999999999999999998
Q ss_pred HH
Q 041545 221 LL 222 (554)
Q Consensus 221 ~l 222 (554)
.+
T Consensus 410 ~L 411 (415)
T PF12460_consen 410 RL 411 (415)
T ss_pred HH
Confidence 75
No 35
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.01 E-value=0.31 Score=55.27 Aligned_cols=158 Identities=13% Similarity=0.214 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHH-HHHHhcCCChhHHHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDS-VFNLCLAS-VTNSISSRNLALASSCLRTTGALV 147 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~-v~~~l~~~~~~l~~sallcl~~l~ 147 (554)
.+|+-.+|..+.-.+++. ....||-|++.++.||.-.-.... .+..-+.. ..+.++.+.+.+.+|.+-++-+++
T Consensus 794 kpylpqi~stiL~rLnnk----sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRLNNK----SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred ccchHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 456666777777777743 456999999999999986644322 23334444 468999999999999999999999
Q ss_pred HHhchh-hhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHH-h
Q 041545 148 NVLGLK-ALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN--PYLGDITELL-V 223 (554)
Q Consensus 148 ~vLg~~-~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls--PYL~~il~~l-~ 223 (554)
++.|.. .-|=...++|.++.+|+.. -+.++.+++.+++.|.+.-|.+++ -|..-....+ .
T Consensus 870 nvigm~km~pPi~dllPrltPILknr----------------heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlel 933 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNR----------------HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLEL 933 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhh----------------HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 999876 5888888999999888863 245788999999999999999988 3444333333 2
Q ss_pred hccCCCCCCChhHHHHHHHHHHHHHhhhh
Q 041545 224 LCPEYLPGSDPKLKVKADAVRRLLTDKIQ 252 (554)
Q Consensus 224 l~~~~~~~~~~~~~s~~~~l~~~la~~v~ 252 (554)
+-.+ ..+.+.++..++ .++++.|.
T Consensus 934 Lkah----kK~iRRaa~nTf-G~IakaIG 957 (1172)
T KOG0213|consen 934 LKAH----KKEIRRAAVNTF-GYIAKAIG 957 (1172)
T ss_pred HHHH----HHHHHHHHHhhh-hHHHHhcC
Confidence 1222 112223333333 67887776
No 36
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.98 E-value=0.73 Score=48.15 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=98.5
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHH---HHHHHHHH--HhcC----------C
Q 041545 67 DSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFN---LCLASVTN--SISS----------R 131 (554)
Q Consensus 67 ~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~---~~L~~v~~--~l~~----------~ 131 (554)
+...+.|..+.|.|..++.. .+.....|..++.||..++=-.|.+..... ++|..+.. .+.. +
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d--~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTD--SSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhC--CccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCC
Confidence 44578899999999999994 355667899999999998877665433444 56664432 2211 2
Q ss_pred ChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc-
Q 041545 132 NLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG- 209 (554)
Q Consensus 132 ~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~- 209 (554)
++.+..+++.+||-|...+... +-.++...+|.+...|+.. +-.+..++--+|.-+++....
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~----------------d~~VRiAAGEaiAll~E~~~~~ 262 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD----------------DVDVRIAAGEAIALLYELARDH 262 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC----------------CHHHHHHHHHHHHHHHHHhhcc
Confidence 4679999999999999888874 4455688888888866542 234778888888777776664
Q ss_pred ---cccccHHHHHHHH
Q 041545 210 ---FLNPYLGDITELL 222 (554)
Q Consensus 210 ---FlsPYL~~il~~l 222 (554)
|.-|+.+.++..+
T Consensus 263 ~~~~~~~~~~~l~~~l 278 (309)
T PF05004_consen 263 EEDFLYEDMEELLEQL 278 (309)
T ss_pred cccccccCHHHHHHHH
Confidence 5557777777665
No 37
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.95 E-value=0.0068 Score=46.11 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 041545 133 LALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEA 202 (554)
Q Consensus 133 ~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~ 202 (554)
|++|..++.++|.++...+...-||+|.++|.++..+++. ++.+..+++-+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~----------------~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD----------------DDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS----------------SHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHhc
Confidence 6799999999999999999999999999999999977642 12467777777754
No 38
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.93 E-value=0.11 Score=60.14 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 041545 72 SFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY--DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNV 149 (554)
Q Consensus 72 ~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~v 149 (554)
.|-...|.|.+-+.. .....|...+.+|..+-.++|++ -|.+..++|.+.++++.+|..++.+.+-|+--+...
T Consensus 864 fF~~ivP~l~~~~~t----~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFET----APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHHhhHHHHHHHhcc----CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 445566666666652 23456888889999999999987 578999999999999999999999999999999999
Q ss_pred hchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHhhccCC
Q 041545 150 LGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-LNPYLGDITELLVLCPEY 228 (554)
Q Consensus 150 Lg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-lsPYL~~il~~l~l~~~~ 228 (554)
.+.-.--|+-+++|.++.+-.+. ......+...++-++..+.+.+|.- +.||-+++++.+... +
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~-------------~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~--L 1004 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDN-------------DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKI--L 1004 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCC-------------CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhc--c
Confidence 99999999999999999844431 1113678899999999999999965 669999999987322 2
Q ss_pred CCCCChhHHHHHHHH
Q 041545 229 LPGSDPKLKVKADAV 243 (554)
Q Consensus 229 ~~~~~~~~~s~~~~l 243 (554)
.|+.+..|-.++
T Consensus 1005 ---dDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 1005 ---DDKKRLVRKEAV 1016 (1030)
T ss_pred ---CcHHHHHHHHHH
Confidence 145655555554
No 39
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.83 E-value=2.1 Score=46.93 Aligned_cols=181 Identities=13% Similarity=0.132 Sum_probs=94.6
Q ss_pred CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHH
Q 041545 114 DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLM 193 (554)
Q Consensus 114 ~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~ 193 (554)
.|....++......+..+...--+..+-|+-.++.+++....|+.+.+++.++.+++.+. ..-++...-
T Consensus 21 ~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~-----------kNPsnP~Fn 89 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS-----------KNPSNPRFN 89 (435)
T ss_dssp TCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH-----------TS---HHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------hCCCCcchh
Confidence 355667777777777543333347788999999999999999999999999999998743 111122223
Q ss_pred HHHHHHHHHHHHHhc-----------ccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 041545 194 ASVLITLEAVIDKLG-----------GFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVI 262 (554)
Q Consensus 194 ~s~lsaL~~lv~~l~-----------~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~ 262 (554)
.-.+-+++.++.... ..+.|-+..|++. .. ..-+--+.+.++-.++.. ..-
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~-----dV--------~EF~PYvfQIla~Lle~~-----~~~ 151 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQ-----DV--------QEFIPYVFQILAQLLELR-----PSS 151 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHT-----T---------TTTHHHHHHHHHHHHHHS-----S--
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH-----HH--------HHHHHHHHHHHHHHHHcC-----CCC
Confidence 333333333333211 1222333333221 00 001112233333333300 011
Q ss_pred hhhHHHHHHHHHHHHhHhhHHH--HHhhhhhhcCcchHHHHHHHHHHHHHhcCCCcc-ccchHHHHHHHHHHhhhhh
Q 041545 263 DFDLKFLLFILHLVRLALPPLL--KIYSGAVDAGDSSLVIAFEILGNIISRMDRSSI-GGFHGKIFDQCLLALDLRR 336 (554)
Q Consensus 263 ~~~~~~~~~~~~~~r~Llpal~--~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i-~~~~~~l~~~~l~aLd~R~ 336 (554)
++++.| ..++|++. ..|+ ....+-++..+|..-|.+.+...+ ..+...+..+|...+.-|.
T Consensus 152 ~~p~~y--------~~L~~~Ll~p~lWe-----~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 152 PLPDAY--------KQLFPPLLSPALWE-----RRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA 215 (435)
T ss_dssp S--TTT--------GGGHHHHTSGGGGG-----STTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT
T ss_pred CCcHHH--------HHHHHHHcCcchhc-----cCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC
Confidence 233333 23333333 3453 234556777788877877666443 4688999999999888876
No 40
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=1.2 Score=50.72 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=100.9
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.+++||.++.||||+||..++=.=-.+ . .+.+...+|.|..=++ ..|.
T Consensus 148 Dv~tLL~sskpYvRKkAIl~lykvFLk------------------------Y----PeAlr~~FprL~EkLe----DpDp 195 (877)
T KOG1059|consen 148 DVFTLLNSSKPYVRKKAILLLYKVFLK------------------------Y----PEALRPCFPRLVEKLE----DPDP 195 (877)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHh------------------------h----hHhHhhhHHHHHHhcc----CCCc
Confidence 467899999999999999988621111 1 4566677788877666 4467
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-C-CChhHHHHHHHHHHHHHH---HhchhhhchhhHHHHHHHHh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSIS-S-RNLALASSCLRTTGALVN---VLGLKALAELPLIMENVRKK 168 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~-~-~~~~l~~sallcl~~l~~---vLg~~~iP~LP~imP~ll~~ 168 (554)
.+.-+|+.-+=-||++=++. +.++.|...+.+. + .+|- .+=.+=.+|.++- .||.+.||-|-.+|-.-.+.
T Consensus 196 ~V~SAAV~VICELArKnPkn---yL~LAP~ffkllttSsNNWm-LIKiiKLF~aLtplEPRLgKKLieplt~li~sT~Am 271 (877)
T KOG1059|consen 196 SVVSAAVSVICELARKNPQN---YLQLAPLFYKLLVTSSNNWV-LIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAM 271 (877)
T ss_pred hHHHHHHHHHHHHHhhCCcc---cccccHHHHHHHhccCCCee-hHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHH
Confidence 78888877777777776653 3334445555543 2 3453 3334444555443 45655555555554422211
Q ss_pred ------hhhhh--hhhhhhccccc------------chhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 169 ------SREIS--TYVDVQNESNE------------DKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 169 ------l~~~~--~~~~~~~~~~~------------~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
.+.+- .+..+..+..+ -+|++..+..=.+.|++++..+-|.+++-+.+=|++++
T Consensus 272 SLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL 345 (877)
T KOG1059|consen 272 SLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCL 345 (877)
T ss_pred HHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHh
Confidence 00000 00000000000 12233345556678889999999999999988888875
No 41
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=2.3 Score=50.83 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=95.1
Q ss_pred CCccHhHHHHHHHHHHHHH--H---HhCCCC-c-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh-hchhhH
Q 041545 89 GESNISLKLTAVSTLEVLA--N---RFASYD-S-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA-LAELPL 160 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA--~---~~g~~~-~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~-iP~LP~ 160 (554)
.+.+...|++|.+||-.|+ . .+|.+. + .+.+.+..+..++..+...++.+.+++++.+....+... -+++++
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3557779999999999999 3 445443 2 477888888888777778888888999999999998886 788888
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHh
Q 041545 161 IMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-LNPYLGDITELLV 223 (554)
Q Consensus 161 imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-lsPYL~~il~~l~ 223 (554)
++..+.-.+.+ ..-++.-+|+.++..++..+|.- ++||++.+|..+.
T Consensus 828 li~~V~~~L~s----------------~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll 875 (1176)
T KOG1248|consen 828 LISMVCLYLAS----------------NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLL 875 (1176)
T ss_pred HHHHHHHHHhc----------------CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHH
Confidence 88877765543 13457889999999999999965 6699999998873
No 42
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.25 E-value=0.077 Score=57.59 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY--DSVFNLCLASVTNSISSRNLALASSCLRTTGALV 147 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~ 147 (554)
+-.|..++|.|.+-.+..+ ...|...+.||..+.+..++. -+.+..++|.+.++++.++..++.+++.++..+.
T Consensus 318 QR~F~~~~p~L~~~~~~~~----~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEAD----DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred HHHHHHHHHHHHHHHhhcC----hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 5577888999988777432 228999999999999999976 5678899999999999999999999999999999
Q ss_pred HHhchhhhchhhHHHHHHHHh
Q 041545 148 NVLGLKALAELPLIMENVRKK 168 (554)
Q Consensus 148 ~vLg~~~iP~LP~imP~ll~~ 168 (554)
+.-.+-+.+|+..++|.+++.
T Consensus 394 ~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 394 EEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HcCHHHHHHHHHHHHHHHHhc
Confidence 999888999999999999874
No 43
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=8.4 Score=44.75 Aligned_cols=99 Identities=11% Similarity=0.195 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHH--------HhCCC--CchHHHHHHHHHHHhcCCChhHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLAN--------RFASY--DSVFNLCLASVTNSISSRNLALASSC 139 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~--------~~g~~--~~~~~~~L~~v~~~l~~~~~~l~~sa 139 (554)
.+++..++|.+..+++. +...+-.-|+.|++.+-. .||++ .|.....+..+.+.++.+...--+..
T Consensus 493 ~~~lm~~~p~li~~L~a----~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~Eneyl 568 (960)
T KOG1992|consen 493 KEHLMALLPRLIRFLEA----ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYL 568 (960)
T ss_pred hHHHHHHHHHHHHhccC----cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHH
Confidence 45666788888888873 233444445555555432 35554 23344555566666665555555788
Q ss_pred HHHHHHHHHHhchhhhchhhHHHHHHHHhhhhh
Q 041545 140 LRTTGALVNVLGLKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 140 llcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~ 172 (554)
+-|+-.+..++...++|+.|.+++.+.+++.+.
T Consensus 569 mKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v 601 (960)
T KOG1992|consen 569 MKAIMRIISILQSAIIPHAPELLRQLTEIVEEV 601 (960)
T ss_pred HHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999988773
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.15 E-value=0.067 Score=46.09 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=67.2
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCch-HH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSV-FN-LCLASVTNSISSRNLALASSCLRTTGALVNVLGLK 153 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~-~~-~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~ 153 (554)
.++.|..+++. . ++.+|..|+.+|..++......... +. .+++.+.+.+.+++++++..++-+++.++......
T Consensus 8 ~i~~l~~~l~~---~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 8 GLPALVSLLSS---S-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred ChHHHHHHHHc---C-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 57778888873 2 4789999999999999875332222 22 67778888888889999999999999999876543
Q ss_pred hhc-hhhHHHHHHHHhhhh
Q 041545 154 ALA-ELPLIMENVRKKSRE 171 (554)
Q Consensus 154 ~iP-~LP~imP~ll~~l~~ 171 (554)
..- .-..++|.+++.++.
T Consensus 84 ~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred HHHHHHCCChHHHHHHHhc
Confidence 322 224478888876654
No 45
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.94 E-value=0.015 Score=44.14 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=45.4
Q ss_pred HhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 041545 93 ISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGAL 146 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l 146 (554)
+.+|..|+.+|+.++...+.. .+....+++.++.++.++++.||..+..++|.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 458999999999987766654 457888999999999988899999999999865
No 46
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=3.1 Score=46.23 Aligned_cols=186 Identities=15% Similarity=0.085 Sum_probs=126.2
Q ss_pred HhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHH
Q 041545 17 ASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLK 96 (554)
Q Consensus 17 ~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lr 96 (554)
.=|+.+.+.+++||+.-+++=++-.+. .-.++..+.+..+.+.+. +.++...+
T Consensus 257 ~~l~ss~~~iq~~al~Wi~efV~i~g~------------------------~~l~~~s~il~~iLpc~s---~~e~~~i~ 309 (675)
T KOG0212|consen 257 PHLQSSEPEIQLKALTWIQEFVKIPGR------------------------DLLLYLSGILTAILPCLS---DTEEMSIK 309 (675)
T ss_pred ccccCCcHHHHHHHHHHHHHHhcCCCc------------------------chhhhhhhhhhhcccCCC---CCccccHH
Confidence 367889999999999999977755432 013333333333333333 55555677
Q ss_pred HHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhh
Q 041545 97 LTAVSTLEVLANRFASY----DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 97 q~Al~~L~~lA~~~g~~----~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~ 172 (554)
-.|...-+.+-+.++.+ .-.+..++....+.++++.-..+.+++--+-.+-+..+.+.+-|.-.+.+.+++.+.+
T Consensus 310 ~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd- 388 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD- 388 (675)
T ss_pred HHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC-
Confidence 77766665666666544 3357789999999999888899999999999999999999999999999999997765
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhh
Q 041545 173 STYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-LNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKI 251 (554)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-lsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v 251 (554)
..+++..-+++.++.++..-.++ +-+++.++++.+.-- ..-++.|..-|.+.+.-.+
T Consensus 389 ---------------~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~-------~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 389 ---------------RSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKED-------TKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred ---------------chhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhh-------hHHHHhhhhHHHHHHHHHh
Confidence 23457777888888888765543 335666666553111 1234445555555554444
Q ss_pred h
Q 041545 252 Q 252 (554)
Q Consensus 252 ~ 252 (554)
.
T Consensus 447 ~ 447 (675)
T KOG0212|consen 447 N 447 (675)
T ss_pred C
Confidence 4
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.86 E-value=3.6 Score=45.94 Aligned_cols=194 Identities=11% Similarity=0.080 Sum_probs=107.9
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH-HHHHHHHHhhccCCCCccH
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR-KMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~l~~~L~~il~~~~~~~~~ 93 (554)
+..+|..++..|.+.|..+|..=..+... -...|. .+.+.|..++.. + +.
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-------------------------~~~l~~~~~~~~L~~l~~~---~-~~ 174 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEG-------------------------LEQLFDSNLLSKLKSLMSQ---S-SD 174 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchh-------------------------HHHHhCcchHHHHHHHHhc---c-CH
Confidence 34588999999999999999844433221 011111 126777777763 1 22
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhh--HHHHHHHHhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELP--LIMENVRKKS 169 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP--~imP~ll~~l 169 (554)
.+|--+++.+-.+++.=..-..... .+++.+++.+.++|.-++.+++-+++.|+. ..+-..||. .+++.+...+
T Consensus 175 ~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l 252 (503)
T PF10508_consen 175 IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLL 252 (503)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHH
Confidence 4554455544444322111011122 267777888888888889999999999999 666667664 4677777766
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHh
Q 041545 170 REISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTD 249 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~ 249 (554)
.... ++......+..+.+.+++.+...-|.-+.--.+.++..+... ..++.......+++++ ..++.
T Consensus 253 ~~~~----------~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~--~~s~d~~~~~~A~dtl-g~igs 319 (503)
T PF10508_consen 253 QDSE----------EDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSM--LESQDPTIREVAFDTL-GQIGS 319 (503)
T ss_pred hccc----------cCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHH--hCCCChhHHHHHHHHH-HHHhC
Confidence 6532 011123345555555555555433322222223444433211 1111122445567777 77777
Q ss_pred hhh
Q 041545 250 KIQ 252 (554)
Q Consensus 250 ~v~ 252 (554)
..+
T Consensus 320 t~~ 322 (503)
T PF10508_consen 320 TVE 322 (503)
T ss_pred CHH
Confidence 777
No 48
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.86 E-value=5.2 Score=44.68 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=90.3
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH-----HHHHHHHHhhccCC
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR-----KMCSEVVLLVDNST 88 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-----~l~~~L~~il~~~~ 88 (554)
.|-.++.+++..+|.|+++++.+-... +.+.+. .+++.+..-++
T Consensus 164 ~L~~l~~~~~~~vR~Rv~el~v~i~~~----------------------------S~~~~~~~~~sgll~~ll~eL~--- 212 (503)
T PF10508_consen 164 KLKSLMSQSSDIVRCRVYELLVEIASH----------------------------SPEAAEAVVNSGLLDLLLKELD--- 212 (503)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhc----------------------------CHHHHHHHHhccHHHHHHHHhc---
Confidence 455688888899999999999944333 233333 25566666555
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcC-CChh-----HHHHHHHHHHHHHHHhchhhhchhhH
Q 041545 89 GESNISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISS-RNLA-----LASSCLRTTGALVNVLGLKALAELPL 160 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~-~~~~-----l~~sallcl~~l~~vLg~~~iP~LP~ 160 (554)
++|.-+|-.|++.+..+|. ......++. .+++.+.+.+.. ...+ +..+.+.++|.++.+-...++--+|.
T Consensus 213 -~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~ 290 (503)
T PF10508_consen 213 -SDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPA 290 (503)
T ss_pred -CccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHH
Confidence 3788999999999999999 222122222 345555555532 1222 33455688888888866667777788
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 041545 161 IMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK 206 (554)
Q Consensus 161 imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~ 206 (554)
++..+...++. .+.....+++.+++.+-.+
T Consensus 291 ~~~~l~~~~~s----------------~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 291 FLERLFSMLES----------------QDPTIREVAFDTLGQIGST 320 (503)
T ss_pred HHHHHHHHhCC----------------CChhHHHHHHHHHHHHhCC
Confidence 88777754332 1223456666666555443
No 49
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.86 E-value=1.2 Score=49.90 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=88.8
Q ss_pred HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545 75 KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
.+|-.|...++ +-+.++|..|..+++-|+++.|+. ++|......+...+...|.|+-+++|.+++.||+-
T Consensus 730 RIcfeLvd~Lk----s~nKeiRR~A~~tfG~Is~aiGPq-----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf- 799 (975)
T COG5181 730 RICFELVDSLK----SWNKEIRRNATETFGCISRAIGPQ-----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF- 799 (975)
T ss_pred HHHHHHHHHHH----HhhHHHHHhhhhhhhhHHhhcCHH-----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-
Confidence 45555666555 224569999999999999999972 45666677777778889999999999999999974
Q ss_pred hchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 155 LAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 155 iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
.++|.++.--.. -...+|++++-+++-+++.++..=-.|+-.|+..+
T Consensus 800 -----sVlP~lm~dY~T----------------Pe~nVQnGvLkam~fmFeyig~~s~dYvy~itPll 846 (975)
T COG5181 800 -----SVLPTLMSDYET----------------PEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLL 846 (975)
T ss_pred -----hhHHHHHhcccC----------------chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 356666652111 23468999999999999999987777777777665
No 50
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.78 E-value=0.38 Score=45.34 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=63.0
Q ss_pred HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHH----HhCC----------C---C---ch----------HHHHHH--
Q 041545 75 KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLAN----RFAS----------Y---D---SV----------FNLCLA-- 122 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~----~~g~----------~---~---~~----------~~~~L~-- 122 (554)
+|++.|..+++. +..+.+|..|+-+++.|.. ++-. + + +. -.+..+
T Consensus 10 ~LL~~L~~iLk~---e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~v 86 (160)
T PF11865_consen 10 ELLDILLNILKT---EQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTV 86 (160)
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHH
Confidence 688999999994 3569999999999999864 1110 0 0 00 001111
Q ss_pred ---HHHHHhcCC-ChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhh
Q 041545 123 ---SVTNSISSR-NLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 123 ---~v~~~l~~~-~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~ 172 (554)
.....++++ -..-..+++-++..+.+.+|.+..||||++||.++..++.+
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~ 140 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC 140 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC
Confidence 111222211 11222467778888889999999999999999999988864
No 51
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.64 E-value=0.14 Score=44.01 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=76.3
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCcc
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGESN 92 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~~ 92 (554)
+.++|+++++.+|+.++..|.+=-...+ .....+. ..++.|..++.. ++
T Consensus 12 l~~~l~~~~~~~~~~a~~~l~~l~~~~~-------------------------~~~~~~~~~~~i~~l~~~l~~----~~ 62 (120)
T cd00020 12 LVSLLSSSDENVQREAAWALSNLSAGNN-------------------------DNIQAVVEAGGLPALVQLLKS----ED 62 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcCCH-------------------------HHHHHHHHCCChHHHHHHHhC----CC
Confidence 5679999999999999999885332211 1122222 578888888873 36
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 041545 93 ISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVN 148 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~ 148 (554)
..++..|+.+|..++...+.....+. .+++.+.+.+...+..++..++.+++.+|.
T Consensus 63 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 63 EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 78999999999999876542112222 257778888888889999999999998873
No 52
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=2.1 Score=49.35 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=62.4
Q ss_pred hhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCcc
Q 041545 13 VNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESN 92 (554)
Q Consensus 13 ~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~ 92 (554)
.+.++=|+.+|.++|||||||+-.=+.... ...|+.+|..++... +
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn~~N------------------------------v~~mv~eLl~fL~~~----d 398 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVNESN------------------------------VRVMVKELLEFLESS----D 398 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhcccc------------------------------HHHHHHHHHHHHHhc----c
Confidence 466788999999999999999873333222 235889999999842 5
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 041545 93 ISLKLTAVSTLEVLANRFASYDSVFNLCLASVTN 126 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~ 126 (554)
...|.-....+..+|++|.++...+.+.|-.+..
T Consensus 399 ~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~ 432 (866)
T KOG1062|consen 399 EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLK 432 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 5788888999999999999987777777766654
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=94.62 E-value=12 Score=43.85 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=94.7
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|-+.|++.+..-|+.||.-+-.-+....+ ...+++.+...+. +.+.
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G~D-----------------------------vS~LF~dVvk~~~----S~d~ 82 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMGRD-----------------------------VSYLFVDVVKLAP----STDL 82 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCC-----------------------------chHHHHHHHHHhC----CCCH
Confidence 355678888888888888644422222111 1124555556665 4478
Q ss_pred hHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSV-FNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~-~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~ 172 (554)
.+|+-....+... ++.+|. ..-+.+...+-++++++-+|+.|+-+++.+.. |.+++.++..++++
T Consensus 83 elKKLvYLYL~~y----a~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----------~~i~e~l~~~lkk~ 148 (746)
T PTZ00429 83 ELKKLVYLYVLST----ARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----------SSVLEYTLEPLRRA 148 (746)
T ss_pred HHHHHHHHHHHHH----cccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHH
Confidence 8999888877755 555664 44556777777888899999999988776432 55555555544442
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc--ccHHHHHH
Q 041545 173 STYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN--PYLGDITE 220 (554)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls--PYL~~il~ 220 (554)
- .|.+..+.-++..++.+++..-|..+. .+++.+..
T Consensus 149 L------------~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~ 186 (746)
T PTZ00429 149 V------------ADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE 186 (746)
T ss_pred h------------cCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH
Confidence 1 123456788888888999988887653 34555544
No 54
>PRK09687 putative lyase; Provisional
Probab=94.56 E-value=2.3 Score=43.75 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=64.5
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|+.+|.+++..||..|...|-.. ... ..++.+..+++ +++.
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~-~~~---------------------------------~~~~~l~~ll~----~~d~ 68 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLR-GGQ---------------------------------DVFRLAIELCS----SKNP 68 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-Ccc---------------------------------hHHHHHHHHHh----CCCH
Confidence 467789999999999999888621 111 13344445444 4466
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNS-ISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKS 169 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~-l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l 169 (554)
..|..|..+|+.|.. .......+++.+... +.++++.||.+++-++|.++. ......|.+++.+...+
T Consensus 69 ~vR~~A~~aLg~lg~----~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~----~~~~~~~~a~~~l~~~~ 137 (280)
T PRK09687 69 IERDIGADILSQLGM----AKRCQDNVFNILNNLALEDKSACVRASAINATGHRCK----KNPLYSPKIVEQSQITA 137 (280)
T ss_pred HHHHHHHHHHHhcCC----CccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc----cccccchHHHHHHHHHh
Confidence 788888888777532 111133445555444 355677788888888877642 22223455555544433
No 55
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.39 E-value=0.075 Score=35.73 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 041545 120 CLASVTNSISSRNLALASSCLRTTGALVNVL 150 (554)
Q Consensus 120 ~L~~v~~~l~~~~~~l~~sallcl~~l~~vL 150 (554)
++|.+.++++++++.||.++..|+|.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4788889999999999999999999999864
No 56
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.28 E-value=1.1 Score=42.46 Aligned_cols=131 Identities=13% Similarity=0.161 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcC-CChhHHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY--DSVFNLCLASVTNSISS-RNLALASSCLRTTGAL 146 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~-~~~~l~~sallcl~~l 146 (554)
.....+++..+..+++.. +..-|-+++.-++.+++..|.+ -.....-+..+++.++. ++..+.++++.+++.+
T Consensus 20 ~~~l~~l~~ri~~LL~s~----~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSK----SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHHHhCCC----ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 567778899999999842 3456777877788888877654 11223344445555543 5677889999999999
Q ss_pred HHHhch-------hhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHH
Q 041545 147 VNVLGL-------KALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDIT 219 (554)
Q Consensus 147 ~~vLg~-------~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il 219 (554)
..-.+. -..|.+|++++.+++.++. ......++.++..++.+.|.-+-||-.++=
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~------------------~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~ 157 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD------------------SSCPETALDALATLLPHHPTTFRPFANKIE 157 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc------------------cccHHHHHHHHHHHHHHCCccccchHHHHH
Confidence 885543 3589999999999996653 124678899999999999999999998886
Q ss_pred HHH
Q 041545 220 ELL 222 (554)
Q Consensus 220 ~~l 222 (554)
..+
T Consensus 158 ~~l 160 (165)
T PF08167_consen 158 SAL 160 (165)
T ss_pred HHH
Confidence 654
No 57
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.15 E-value=0.76 Score=43.74 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=84.5
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhh
Q 041545 90 ESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKS 169 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l 169 (554)
+++.++|++|.+|+.++-..+... -.+...+..+..++++ +..++.-+.+.+..++........+.|..+++++-+.+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~-~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSR-IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSS-S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999966542 3467778889999986 89999999999999999999999999999999999888
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 041545 170 REISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG 209 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~ 209 (554)
...- .++.+. .+.+..++..-|++-++..+-.++|.
T Consensus 116 ~~k~-k~~Avk---QE~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 116 SKKL-KENAVK---QEIEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp H-----TTS-H---HHHHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred hccC-CCCccc---ccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 6421 111111 13445667888888888887666653
No 58
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.96 E-value=0.34 Score=39.80 Aligned_cols=73 Identities=10% Similarity=0.205 Sum_probs=55.1
Q ss_pred HHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhc
Q 041545 77 CSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALA 156 (554)
Q Consensus 77 ~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP 156 (554)
+|.|...+. ++++..+|..|+.+|+ .+|. + .+++.+.+.++++++.++..++..+|.+-
T Consensus 1 i~~L~~~l~---~~~~~~vr~~a~~~L~----~~~~--~---~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQ---NDPDPQVRAEAARALG----ELGD--P---EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHH---TSSSHHHHHHHHHHHH----CCTH--H---HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHh---cCCCHHHHHHHHHHHH----HcCC--H---hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 466777775 4668889999998888 3331 2 45777777888899999999999999873
Q ss_pred hhhHHHHHHHHhhhh
Q 041545 157 ELPLIMENVRKKSRE 171 (554)
Q Consensus 157 ~LP~imP~ll~~l~~ 171 (554)
-|..+|.+.+.+++
T Consensus 60 -~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 60 -DPEAIPALIKLLQD 73 (88)
T ss_dssp -HHHTHHHHHHHHTC
T ss_pred -CHHHHHHHHHHHcC
Confidence 37788888876654
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.90 E-value=0.32 Score=39.94 Aligned_cols=83 Identities=10% Similarity=0.123 Sum_probs=59.1
Q ss_pred hHHhh-hcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 15 LYASL-FNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 15 ~~~ll-~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
|+..| +++++.||..|...|. ++ . .+ ..++.|..+++ +++.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~-~~---~---------------------------~~---~~~~~L~~~l~----d~~~ 45 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALG-EL---G---------------------------DP---EAIPALIELLK----DEDP 45 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHH-CC---T---------------------------HH---HHHHHHHHHHT----SSSH
T ss_pred HHHHHhcCCCHHHHHHHHHHHH-Hc---C---------------------------CH---hHHHHHHHHHc----CCCH
Confidence 56767 8889999999999999 11 1 11 35777777775 4578
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-ChhHHHHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSR-NLALASSCLRTTG 144 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~-~~~l~~sallcl~ 144 (554)
.+|..|+.+|+.+ |. ...++.+.+.+.++ +..++..++-++|
T Consensus 46 ~vr~~a~~aL~~i----~~-----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 46 MVRRAAARALGRI----GD-----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHHCC----HH-----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CC-----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 8999999999976 31 23556666667654 5566888887775
No 60
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=17 Score=42.28 Aligned_cols=140 Identities=18% Similarity=0.226 Sum_probs=99.9
Q ss_pred cchhhhhhcchh-----hhHHhhhcC-ChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHH
Q 041545 2 HWLEVQLSVAPV-----NLYASLFNG-EICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRK 75 (554)
Q Consensus 2 ~~~~~~~~~~~~-----~~~~ll~~~-~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 75 (554)
||.+||..---. -...||+-. |.-||--+-+.++--+.+ |++..++=.|+|..
T Consensus 513 ~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD---------------------~nF~~dsFlp~len 571 (978)
T KOG1993|consen 513 QWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDD---------------------WNFSEDSFLPYLEN 571 (978)
T ss_pred hhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhh---------------------ccCChhhhhhhHHH
Confidence 899988653222 122366666 888999999999966655 44566666888888
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHh--cCCChhHHHHHHHHHHHHHHHhch
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSI--SSRNLALASSCLRTTGALVNVLGL 152 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l--~~~~~~l~~sallcl~~l~~vLg~ 152 (554)
+...+..+++. -++.+.|-..+..++.+..+.+.- .|....+++..-... +.+++-+|...+-.+-.+++.+|+
T Consensus 572 lf~~lfkll~~---~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~ 648 (978)
T KOG1993|consen 572 LFVLLFKLLKA---VEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGA 648 (978)
T ss_pred HHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhcc
Confidence 88888888884 446678899999999999999854 344333333322221 235666777777788999999999
Q ss_pred hhhchhhHHHHHH
Q 041545 153 KALAELPLIMENV 165 (554)
Q Consensus 153 ~~iP~LP~imP~l 165 (554)
..-++-|-+.|-+
T Consensus 649 qS~~~~~fL~pVI 661 (978)
T KOG1993|consen 649 QSFEFYPFLYPVI 661 (978)
T ss_pred CCccchHHHHHHH
Confidence 9999988888753
No 61
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=4.9 Score=44.75 Aligned_cols=288 Identities=13% Similarity=0.126 Sum_probs=168.9
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCc--hHHHHHHH-HHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhh
Q 041545 93 ISLKLTAVSTLEVLANRFASYDS--VFNLCLAS-VTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKS 169 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~--~~~~~L~~-v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l 169 (554)
.+=|++|..-++.+.+.+-.++. ....++.. +-+-..+.+.+-+..++..++.++-++|.+..+|+.+++|+++..+
T Consensus 14 YekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf 93 (675)
T KOG0212|consen 14 YEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCF 93 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhc
Confidence 44588888888888887766533 46666763 4455566777777799999999999999999999999999999977
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHh
Q 041545 170 REISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTD 249 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~ 249 (554)
.+. +..+-..+|-++-.+.+-..+-+-+|.++|...++... .++|.+++..+.-+-+++.+
T Consensus 94 ~D~----------------d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls---aDsd~~V~~~aeLLdRLikd 154 (675)
T KOG0212|consen 94 SDQ----------------DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS---ADSDQNVRGGAELLDRLIKD 154 (675)
T ss_pred cCc----------------cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh---cCCccccccHHHHHHHHHHH
Confidence 652 33466778888888889888999999999998873221 22344454444444333322
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHH
Q 041545 250 KIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCL 329 (554)
Q Consensus 250 ~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l 329 (554)
-+- .....+. ...++|-+.+.... .++..-..+.+-+. ++...+.-....|.+.+++-++
T Consensus 155 IVt----e~~~tFs------------L~~~ipLL~eriy~---~n~~tR~flv~Wl~-~Lds~P~~~m~~yl~~~ldGLf 214 (675)
T KOG0212|consen 155 IVT----ESASTFS------------LPEFIPLLRERIYV---INPMTRQFLVSWLY-VLDSVPDLEMISYLPSLLDGLF 214 (675)
T ss_pred hcc----ccccccC------------HHHHHHHHHHHHhc---CCchHHHHHHHHHH-HHhcCCcHHHHhcchHHHHHHH
Confidence 211 0000111 23344444433321 12222112222222 2233333345567777777777
Q ss_pred HHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHH
Q 041545 330 LALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAE 409 (554)
Q Consensus 330 ~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e 409 (554)
+-|.-- .+++-.+=+.+++-|++=|- =.|.+.++-+-....+.... .....-+.++ ..-..+|..
T Consensus 215 ~~LsD~------s~eVr~~~~t~l~~fL~eI~------s~P~s~d~~~~i~vlv~~l~--ss~~~iq~~a-l~Wi~efV~ 279 (675)
T KOG0212|consen 215 NMLSDS------SDEVRTLTDTLLSEFLAEIR------SSPSSMDYDDMINVLVPHLQ--SSEPEIQLKA-LTWIQEFVK 279 (675)
T ss_pred HHhcCC------cHHHHHHHHHHHHHHHHHHh------cCccccCcccchhhcccccc--CCcHHHHHHH-HHHHHHHhc
Confidence 765432 23333333334443433332 23333332222222111111 1134455566 667788888
Q ss_pred hcchhhccchhhHHHHHHHHhhhhh
Q 041545 410 SHRSLFVPYFKYLLEGCVQHLTDAK 434 (554)
Q Consensus 410 ~LKslftpy~~~ll~~~~~~L~~~~ 434 (554)
--+.-+.||++-++......+.+.+
T Consensus 280 i~g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred CCCcchhhhhhhhhhhcccCCCCCc
Confidence 8889999999999988877776643
No 62
>PRK09687 putative lyase; Provisional
Probab=93.69 E-value=0.79 Score=47.18 Aligned_cols=97 Identities=3% Similarity=-0.067 Sum_probs=63.3
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
+..|++++++.+|+-|...|.. +...+. . ....++.|..++. ++++..
T Consensus 59 l~~ll~~~d~~vR~~A~~aLg~-lg~~~~-------------------------~---~~~a~~~L~~l~~---~D~d~~ 106 (280)
T PRK09687 59 AIELCSSKNPIERDIGADILSQ-LGMAKR-------------------------C---QDNVFNILNNLAL---EDKSAC 106 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHh-cCCCcc-------------------------c---hHHHHHHHHHHHh---cCCCHH
Confidence 5668999999999999999983 221110 0 2235566666655 466788
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGAL 146 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l 146 (554)
+|..|+.+|+.++..-. ......++.....+.++++.||..++.++|.+
T Consensus 107 VR~~A~~aLG~~~~~~~---~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~ 155 (280)
T PRK09687 107 VRASAINATGHRCKKNP---LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI 155 (280)
T ss_pred HHHHHHHHHhccccccc---ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc
Confidence 99999999988743211 12334445555556667788888777777643
No 63
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.46 E-value=3.4 Score=48.17 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=95.9
Q ss_pred HhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhh
Q 041545 93 ISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNS-ISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSR 170 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~-l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~ 170 (554)
++---+.+.++..+|..+|-+ ++.+..++...-+. ++..++.+...+.-.+|++++-+|.+- -|||..+|.+++.++
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~Lh 559 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLFQGLH 559 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHHHHhc
Confidence 444566788999999999976 44666666654432 333588999999999999999999884 477888888888776
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH--hhccCCCCCCChhHHHHHHHHHHHHH
Q 041545 171 EISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL--VLCPEYLPGSDPKLKVKADAVRRLLT 248 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l--~l~~~~~~~~~~~~~s~~~~l~~~la 248 (554)
..+ .-..+.+.+.++.+.-|..+.||.+.++..+ ++-+..+ .+..+...+.+|--.+.
T Consensus 560 ~sk------------------~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~--~~S~~~klm~sIGyvls 619 (982)
T KOG2022|consen 560 NSK------------------ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNA--KDSDRLKLMKSIGYVLS 619 (982)
T ss_pred Cch------------------HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccccc--CchHHHHHHHHHHHHHH
Confidence 522 1223344499999999999999999999886 2222221 23344445556644444
Q ss_pred hhhh
Q 041545 249 DKIQ 252 (554)
Q Consensus 249 ~~v~ 252 (554)
...|
T Consensus 620 ~~~p 623 (982)
T KOG2022|consen 620 RLKP 623 (982)
T ss_pred hccH
Confidence 3333
No 64
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.44 E-value=1.9 Score=40.80 Aligned_cols=128 Identities=14% Similarity=0.080 Sum_probs=89.2
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.+..||+.++++-|-.++.|+...+++.+ |+.+ ..+-...+..|..+++. .+..
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-------------------~e~l----~~~~~~W~~~Ll~~L~~---~~~~ 82 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCS-------------------WEIL----LSHGSQWLRALLSILEK---PDPP 82 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhh-------------------HHHH----HHHHHHHHHHHHHHHcC---CCCH
Confidence 46679999999999999999998888754 2222 34445677778888883 5677
Q ss_pred hHHHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHh-cC-CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANRFASYD----SVFNLCLASVTNSI-SS-RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRK 167 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~----~~~~~~L~~v~~~l-~~-~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~ 167 (554)
..+..|..++..|-...+... ....+.++.+++.+ +- ++....+.++-+++.+....-.-+=||-.++-..++.
T Consensus 83 ~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 83 SVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 889999999999999887641 12334444444322 11 1156677888888888777777777777766665554
No 65
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=8.8 Score=44.45 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=89.3
Q ss_pred HHHHhhccCCCCccHhHHHHHHHHHHHHHHHhC--CC--CchHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHhchh
Q 041545 79 EVVLLVDNSTGESNISLKLTAVSTLEVLANRFA--SY--DSVFNLCLASVTNSISS-RNLALASSCLRTTGALVNVLGLK 153 (554)
Q Consensus 79 ~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g--~~--~~~~~~~L~~v~~~l~~-~~~~l~~sallcl~~l~~vLg~~ 153 (554)
.+..+++ +.+|..+|-++..+++++..-+. ++ .|++..+--.+.+.+.. ..-..+.+.+..++.++...++.
T Consensus 530 a~lnLL~---d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 530 AFLNLLQ---DQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHhcC---ccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3445555 67788999999999999999554 33 33443333333333322 23345577888999999999999
Q ss_pred hhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc--c-ccccHHHHHHHH
Q 041545 154 ALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG--F-LNPYLGDITELL 222 (554)
Q Consensus 154 ~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~--F-lsPYL~~il~~l 222 (554)
+-||.-+++-.+=..++..+ ....+..+++.++..+|..+|. | +.|+|-+++...
T Consensus 607 I~P~~~~ivq~lp~LWe~s~--------------~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~ 664 (978)
T KOG1993|consen 607 IAPYASTIVQYLPLLWEESE--------------EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELS 664 (978)
T ss_pred hhHHHHHHHHHHHHHHhhhc--------------cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHh
Confidence 99999988866555555421 1235788999999999999983 4 559999999875
No 66
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.33 E-value=5.5 Score=46.60 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=112.0
Q ss_pred hcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHH
Q 041545 20 FNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTA 99 (554)
Q Consensus 20 ~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~A 99 (554)
-..||+|...+.+++.+-++... .-.+.-..++|.|.++++...+.-...+.-+|
T Consensus 583 ~s~DP~V~~~~qd~f~el~q~~~-------------------------~~g~m~e~~iPslisil~~~~~~~~~~l~~~a 637 (1005)
T KOG2274|consen 583 YSEDPQVASLAQDLFEELLQIAA-------------------------NYGPMQERLIPSLISVLQLNADKAPAGLCAIA 637 (1005)
T ss_pred hcCCchHHHHHHHHHHHHHHHHH-------------------------hhcchHHHHHHHHHHHHcCcccccCchhhHHH
Confidence 34569999999999998887533 22667778999999999987655567899999
Q ss_pred HHHHHHHHHHhCCCCc--hHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHH-----hchhhhchhhHHHHHHHHhhhh
Q 041545 100 VSTLEVLANRFASYDS--VFNLCLASVTNSI-SSRNLALASSCLRTTGALVNV-----LGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 100 l~~L~~lA~~~g~~~~--~~~~~L~~v~~~l-~~~~~~l~~sallcl~~l~~v-----Lg~~~iP~LP~imP~ll~~l~~ 171 (554)
++-|.++-++-++.-| ..--+.|.+.++. -++|......+==|+..++++ +.-+.-|-.. +-.+++.+.+
T Consensus 638 idvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~--~~yImqV~sq 715 (1005)
T KOG2274|consen 638 IDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN--LWYIMQVLSQ 715 (1005)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc--HHHHHHHHHH
Confidence 9999999998877633 3445777777775 356778888888888888887 2222233333 3333333333
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 172 ISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
.++-.. .++ -..-+=-.+..++.++|..+.|.+++|++.+
T Consensus 716 --LLdp~~------sds---~a~~VG~lV~tLit~a~~el~~n~d~IL~Av 755 (1005)
T KOG2274|consen 716 --LLDPET------SDS---AAAFVGPLVLTLITHASSELGPNLDQILRAV 755 (1005)
T ss_pred --HcCCcc------chh---HHHHHhHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 111111 011 1112223446788999999999999999886
No 67
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.55 E-value=30 Score=43.04 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=109.7
Q ss_pred cccCCCCCCccccccCc----cchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHH
Q 041545 51 RRELDPDSNSRWFHLDD----SAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVT 125 (554)
Q Consensus 51 ~~~~~~~~~~~~~~~~~----~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~ 125 (554)
.|.+-.+++-.|.++++ .+...+.+|+|.+...++ .+-+...|..+..-+..|+.++|.| .|+--..+....
T Consensus 1207 ~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R---~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~ 1283 (1702)
T KOG0915|consen 1207 LRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVR---GSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALF 1283 (1702)
T ss_pred HHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHh---ccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHh
Confidence 45566667777776655 466788899999999999 4566778999999999999999999 566666666666
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHHhch-hhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 041545 126 NSISSRNLALASSCLRTTGALVNVLGL-KALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVI 204 (554)
Q Consensus 126 ~~l~~~~~~l~~sallcl~~l~~vLg~-~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv 204 (554)
-++.+.+..++-+.-.+.|-++..=.+ .++-++-+++-..+. ..++. ...+|..+..|.
T Consensus 1284 ~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~-----------------k~es~---~siscatis~Ia 1343 (1702)
T KOG0915|consen 1284 PGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLG-----------------KDESL---KSISCATISNIA 1343 (1702)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc-----------------cCCCc---cchhHHHHHHHH
Confidence 677767788887766666777766655 455555555544333 11111 144555555588
Q ss_pred HHhcccccccHHHHHHHHhhccCC
Q 041545 205 DKLGGFLNPYLGDITELLVLCPEY 228 (554)
Q Consensus 205 ~~l~~FlsPYL~~il~~l~l~~~~ 228 (554)
.+.+..|.-|-..|+-.+++..++
T Consensus 1344 n~s~e~Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1344 NYSQEMLKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred HhhHHHHHhhHHHHHHHHHHHHhH
Confidence 888888999999999988666554
No 68
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=92.55 E-value=0.65 Score=44.72 Aligned_cols=89 Identities=10% Similarity=0.148 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHH----HHHHhcCCChhHHHHHHHHHHHH-
Q 041545 72 SFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLAS----VTNSISSRNLALASSCLRTTGAL- 146 (554)
Q Consensus 72 ~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~----v~~~l~~~~~~l~~sallcl~~l- 146 (554)
.|...+|.+..=+. +.+...|=.|..++.-+-++ |.. ....++++. +...+++.++.+...++.|+-.|
T Consensus 35 dy~~~Lpif~dGL~----Et~~Py~flA~~g~~dll~~-~~~-~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv 108 (183)
T PF10274_consen 35 DYHHYLPIFFDGLR----ETEHPYRFLARQGIKDLLER-GGG-EKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLV 108 (183)
T ss_pred chhhHHHHHHhhhh----ccCccHHHHHHHHHHHHHHh-cch-hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35566666666555 22345777777777777777 332 234444554 44778889999999999999999
Q ss_pred --HHHhchhhhchhhHHHHHHH
Q 041545 147 --VNVLGLKALAELPLIMENVR 166 (554)
Q Consensus 147 --~~vLg~~~iP~LP~imP~ll 166 (554)
....|+...||++++.|.+=
T Consensus 109 ~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 109 TSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HhhhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999998654
No 69
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.52 E-value=2 Score=44.22 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=95.9
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCc-cchHHHHHHHHHHHHhhcc-CCCCcc
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDD-SAFESFRKMCSEVVLLVDN-STGESN 92 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~l~~~L~~il~~-~~~~~~ 92 (554)
++.|++..++.+|.+.+.+|..=+..-.... |+.+.. .-.+.|.+.+......+-. +.+++.
T Consensus 124 iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~----------------~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 124 ILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE----------------WDILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCChhh----------------hHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 6789999999999999999996665433211 111111 1133444433334444432 235667
Q ss_pred HhHHHHHHHHHHHHHHHhCCC-----CchHHHHHHH-HHHHhcC----CChhHHHHHHHHHHHHHHHhchhhhchhhHHH
Q 041545 93 ISLKLTAVSTLEVLANRFASY-----DSVFNLCLAS-VTNSISS----RNLALASSCLRTTGALVNVLGLKALAELPLIM 162 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~-----~~~~~~~L~~-v~~~l~~----~~~~l~~sallcl~~l~~vLg~~~iP~LP~im 162 (554)
..+=+.|..|+-.+++.-..+ ...+..++.. +...+.. +..+++...+-.+..+++.+|...+-||.+++
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii 267 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRII 267 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 779999999999998864322 1234444544 4444421 35899999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 041545 163 ENVRKKSRE 171 (554)
Q Consensus 163 P~ll~~l~~ 171 (554)
|.+.+.++.
T Consensus 268 ~~l~~~l~n 276 (282)
T PF10521_consen 268 PVLSQILEN 276 (282)
T ss_pred HHHHHHhcC
Confidence 999987765
No 70
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=92.25 E-value=0.84 Score=52.08 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHhCCC-----Cc----hHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHhchhhhchhhHHHH
Q 041545 95 LKLTAVSTLEVLANRFASY-----DS----VFNLCLASVTNSIS--SRNLALASSCLRTTGALVNVLGLKALAELPLIME 163 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~-----~~----~~~~~L~~v~~~l~--~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP 163 (554)
-.+.++-+++.+|+.|... .+ .|..++..+.-.++ ....++|+..=.+++.|+.++|.+.+||+|+.+.
T Consensus 662 ~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie 741 (980)
T KOG2021|consen 662 ECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIE 741 (980)
T ss_pred HHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHH
Confidence 4899999999999999754 12 36666666544443 2467899999999999999999999999999999
Q ss_pred HHHHh
Q 041545 164 NVRKK 168 (554)
Q Consensus 164 ~ll~~ 168 (554)
.+++.
T Consensus 742 ~lL~s 746 (980)
T KOG2021|consen 742 LLLSS 746 (980)
T ss_pred HHHhc
Confidence 98873
No 71
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.15 E-value=2.2 Score=43.34 Aligned_cols=148 Identities=13% Similarity=0.083 Sum_probs=89.8
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhH
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISL 95 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~l 95 (554)
..+|.+|++.||.||+..|++=-.... .+..-..-++++...+.. ..-+..+
T Consensus 60 ~~lL~~p~~~vr~~AL~aL~Nls~~~e--------------------------n~~~Ik~~i~~Vc~~~~s--~~lns~~ 111 (254)
T PF04826_consen 60 GSLLNDPNPSVREKALNALNNLSVNDE--------------------------NQEQIKMYIPQVCEETVS--SPLNSEV 111 (254)
T ss_pred HHHcCCCChHHHHHHHHHHHhcCCChh--------------------------hHHHHHHHHHHHHHHHhc--CCCCCHH
Confidence 349999999999999999983211111 111222223333333321 2335567
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH--hchhhhchhhHHHHHHHHhhhhhh
Q 041545 96 KLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNV--LGLKALAELPLIMENVRKKSREIS 173 (554)
Q Consensus 96 rq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~v--Lg~~~iP~LP~imP~ll~~l~~~~ 173 (554)
++.++-.|..++-.... +..+...++.....+..++..++..++-++..|+.. +..+++.. +.++.++..++..
T Consensus 112 Q~agLrlL~nLtv~~~~-~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~--q~~~~~~~Lf~~~- 187 (254)
T PF04826_consen 112 QLAGLRLLTNLTVTNDY-HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA--QVLSSFLSLFNSS- 187 (254)
T ss_pred HHHHHHHHHccCCCcch-hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc--cchhHHHHHHccC-
Confidence 77766666666532211 345677788888888888899999999988888763 22233222 3444555544431
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 041545 174 TYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG 209 (554)
Q Consensus 174 ~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~ 209 (554)
.+.+.+.-+++.++.+-+++..
T Consensus 188 --------------~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 188 --------------ESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred --------------CccHHHHHHHHHHHHHHHhhCc
Confidence 2445788888888888776653
No 72
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=91.87 E-value=1.6 Score=38.47 Aligned_cols=85 Identities=22% Similarity=0.271 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhcCCC--h--hHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHH
Q 041545 116 VFNLCLASVTNSISSRN--L--ALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRES 191 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~~~--~--~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~ 191 (554)
.+..++....+.+.+.+ . .-+..++.+++.|++..|..+.+++|++|--+-..++. ++
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~------------------~e 69 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI------------------PE 69 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------------hh
Confidence 34445555555554432 3 34789999999999999999999999998766654432 34
Q ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHH
Q 041545 192 LMASVLITLEAVIDKLGGFLNPYLGDITEL 221 (554)
Q Consensus 192 l~~s~lsaL~~lv~~l~~FlsPYL~~il~~ 221 (554)
+...++++-..++.+++. .+|+.++..
T Consensus 70 L~~~al~~W~~~i~~L~~---~~l~~ll~~ 96 (107)
T smart00802 70 LRSLALRCWHVLIKTLKE---EELGPLLDQ 96 (107)
T ss_pred HHHHHHHHHHHHHHhCCH---HHHHHHHHH
Confidence 788899999999999885 445555544
No 73
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.00 E-value=5.2 Score=45.02 Aligned_cols=122 Identities=9% Similarity=0.145 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 041545 71 ESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYD--SVFNLCLASVTNSISSRNLALASSCLRTTGALVN 148 (554)
Q Consensus 71 ~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~--~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~ 148 (554)
||+..++..+...++. ...+.|+-|++.++.|+.-.-.-+ ..+..+=....+.++.+.+.+.+|.+-++-++.+
T Consensus 600 p~l~~ivStiL~~L~~----k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~s 675 (975)
T COG5181 600 PHLSMIVSTILKLLRS----KPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYS 675 (975)
T ss_pred cchHHHHHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhh
Confidence 4455566666666663 345689999999999887443221 2344444456789999999999999999999999
Q ss_pred Hhchh-hhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc
Q 041545 149 VLGLK-ALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN 212 (554)
Q Consensus 149 vLg~~-~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls 212 (554)
+.+-+ +-|-...++|.++.+|+... ..+..+.+..++.+...-|..++
T Consensus 676 v~~~~~mqpPi~~ilP~ltPILrnkh----------------~Kv~~nti~lvg~I~~~~peyi~ 724 (975)
T COG5181 676 VHRFRSMQPPISGILPSLTPILRNKH----------------QKVVANTIALVGTICMNSPEYIG 724 (975)
T ss_pred hhcccccCCchhhccccccHhhhhhh----------------HHHhhhHHHHHHHHHhcCcccCC
Confidence 99887 46777888888888887632 24667778888888888888776
No 74
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.91 E-value=2 Score=37.65 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHhcC----CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHH
Q 041545 116 VFNLCLASVTNSISS----RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRES 191 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~----~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~ 191 (554)
.+..++....+.+.+ .+..-+..++.++++|++..|....+++|++|..+-..++. +.
T Consensus 8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------------------~~ 69 (107)
T PF08064_consen 8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------------------PE 69 (107)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------------------hh
Confidence 344445544444433 45677889999999999998998999999998766554432 24
Q ss_pred HHHHHHHHHHHHHHHhcc-cccccHHHHHHHH
Q 041545 192 LMASVLITLEAVIDKLGG-FLNPYLGDITELL 222 (554)
Q Consensus 192 l~~s~lsaL~~lv~~l~~-FlsPYL~~il~~l 222 (554)
+...++.+-..++.+++. -+.|+++.++..+
T Consensus 70 l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 70 LREEALSCWNCFIKTLDEEDLGPLLDQIFAIL 101 (107)
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 677788999999999985 3667777777654
No 75
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.78 E-value=22 Score=36.69 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=85.5
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhH-----HHH
Q 041545 89 GESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPL-----IME 163 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~-----imP 163 (554)
.+.+..+|..|+.||++.+---.+ ...+-++.....++.++.+++..++-++.-+.-..|...+...+. -..
T Consensus 37 ~~~~~~vR~~al~cLGl~~Lld~~---~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 37 QSSDPAVRELALKCLGLCCLLDKE---LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred cCCCHHHHHHHHHHHHHHHHhChH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 355679999999999998875542 333344555555555789999999999999999999998888776 333
Q ss_pred HHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH---hhccCCCCCCChhHHHHH
Q 041545 164 NVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL---VLCPEYLPGSDPKLKVKA 240 (554)
Q Consensus 164 ~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l---~l~~~~~~~~~~~~~s~~ 240 (554)
.+++.+... .+ . .+..++..++-.+.+++=+ +-+.+ -++++..+ ...|...+ -
T Consensus 114 ~l~~~l~~~--l~--------~--~~~~~~~~a~EGl~KLlL~--~~i~~-~~~vL~~Lll~yF~p~t~~---------~ 169 (298)
T PF12719_consen 114 SLLKILTKF--LD--------S--ENPELQAIAVEGLCKLLLS--GRISD-PPKVLSRLLLLYFNPSTED---------N 169 (298)
T ss_pred HHHHHHHHH--Hh--------c--CCHHHHHHHHHHHHHHHhc--CCCCc-HHHHHHHHHHHHcCcccCC---------c
Confidence 444444331 10 0 1334777777888777653 22332 23444443 22343211 1
Q ss_pred HHHHHHHHhhhh
Q 041545 241 DAVRRLLTDKIQ 252 (554)
Q Consensus 241 ~~l~~~la~~v~ 252 (554)
..++++|+-..|
T Consensus 170 ~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 170 QRLRQCLSVFFP 181 (298)
T ss_pred HHHHHHHHHHHH
Confidence 156677776666
No 76
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=90.77 E-value=2.3 Score=50.92 Aligned_cols=127 Identities=16% Similarity=0.253 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 041545 71 ESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNV 149 (554)
Q Consensus 71 ~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~v 149 (554)
..+.+++.+...-+- .+++..+|++-+.+|.-||.-||++.. .+ +|.-++--|+..||++|++-+-.+.-+|-.
T Consensus 573 ~~L~~~V~~~v~sLl---sd~~~~Vkr~Lle~i~~LC~FFGk~ksND~--iLshLiTfLNDkDw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLL---SDSPPIVKRALLESIIPLCVFFGKEKSNDV--ILSHLITFLNDKDWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHHHHHhhhcccccc--hHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence 344444444433333 244578999999999999999999833 22 355556667788999999888777777777
Q ss_pred hchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHH
Q 041545 150 LGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN-PYLGDITELL 222 (554)
Q Consensus 150 Lg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls-PYL~~il~~l 222 (554)
.|.+.+.. -++|-+.+.+.+ ..+.+..+|+.++..+++. ++|- ||+.+|++.+
T Consensus 648 VG~rs~se--yllPLl~Q~ltD----------------~EE~Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v 701 (1431)
T KOG1240|consen 648 VGWRSVSE--YLLPLLQQGLTD----------------GEEAVIVSALGSLSILIKL--GLLRKPAVKDILQDV 701 (1431)
T ss_pred EeeeeHHH--HHHHHHHHhccC----------------cchhhHHHHHHHHHHHHHh--cccchHHHHHHHHhh
Confidence 77773321 134444443332 3457899999999999984 4555 9999999886
No 77
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=90.22 E-value=4.2 Score=47.04 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=102.0
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|+.+|..++..+.+.+-.++++.+..... .| ++..|+..--.
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~-----------------~~-------------l~~~l~~y~~~------- 50 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSDRE-----------------PW-------------LVNGLVDYYLS------- 50 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhccch-----------------HH-------------HHHHHHHHHhh-------
Confidence 578899999999999999999988876431 13 33333333221
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhh-HHHHHHHHhhhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELP-LIMENVRKKSREI 172 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP-~imP~ll~~l~~~ 172 (554)
-...-++++|+ |-.+|.-...+..+-+++... .-|-.++..||.+++.-.+..=..+- .+++.+++.|+.
T Consensus 51 ---t~s~~~~~il~---~~~~P~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~- 121 (668)
T PF04388_consen 51 ---TNSQRALEILV---GVQEPHDKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQF- 121 (668)
T ss_pred ---cCcHHHHHHHH---hcCCccHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhh-
Confidence 11223444554 444676666677777777654 44566677778999887766533332 456677776654
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 173 STYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
|.+..+..+++++|..++=++|.-+.|||.+++..+
T Consensus 122 --------------D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 122 --------------DTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIF 157 (668)
T ss_pred --------------cccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 224567889999999999999999999999999987
No 78
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=28 Score=38.97 Aligned_cols=213 Identities=12% Similarity=0.096 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHhhccCC-----CCccHh---HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNST-----GESNIS---LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLR 141 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~-----~~~~~~---lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sall 141 (554)
.|||.+++.-+..=++... .+++.+ -|-...+.++=++--.|+ +..+..+.-.+.+ .+.+|+..++++-
T Consensus 335 rpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs-~e~lk~~~~~l~e--~~~~We~~EAaLF 411 (559)
T KOG2081|consen 335 RPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGS-DECLKQMYIRLKE--NNASWEEVEAALF 411 (559)
T ss_pred HHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHcc--CCCchHHHHHHHH
Confidence 4555555555555555433 122333 466666666677777886 2345544444444 4578999999999
Q ss_pred HHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Q 041545 142 TTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITEL 221 (554)
Q Consensus 142 cl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~ 221 (554)
++..++....+.--+.+|.+|..+.+.=.|.. --......++.+...++.-|.++.|-+.=+...
T Consensus 412 ~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~---------------~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~ 476 (559)
T KOG2081|consen 412 ILRAVAKNVSPEENTIMPEVLKLICNLPEQAP---------------LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQG 476 (559)
T ss_pred HHHHHhccCCccccchHHHHHHHHhCCccchh---------------HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999888877777777766555322211 112234455666788888888888777766666
Q ss_pred HhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhh--hcCcchHH
Q 041545 222 LVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAV--DAGDSSLV 299 (554)
Q Consensus 222 l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~--~~~~~~l~ 299 (554)
....+ + ...+......+.......++ -++|.+...-.... ..+..+..
T Consensus 477 ~~~~~-~----as~~a~~~~~i~~~c~~~~~-------------------------~l~~~~~~l~~~l~~~~~~~e~a~ 526 (559)
T KOG2081|consen 477 LQLKR-L----ASAAALAFHRICSACRVQMT-------------------------CLIPSLLELIRSLDSTQINEEAAC 526 (559)
T ss_pred hhhcc-h----hHHHHHHHHHHHHHHHHHhh-------------------------hhhHHHHHHHHHHHHHhccHHHHH
Confidence 43333 2 11111122222222222222 12222222211111 11233333
Q ss_pred HHHHHHHHHHHhcCCCccccchHHHHHHHHHH
Q 041545 300 IAFEILGNIISRMDRSSIGGFHGKIFDQCLLA 331 (554)
Q Consensus 300 ~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~a 331 (554)
+++-++.++.+.+...+..+.++++..-+..
T Consensus 527 -l~~~~s~i~~~lp~~k~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 527 -LLQGISLIISNLPAHKAKIALEELCEPQLRN 557 (559)
T ss_pred -HHHHHHHHHhcCCHhhhhHHHHHHhhHHHhc
Confidence 8899999999999988888888888776653
No 79
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.79 E-value=11 Score=45.54 Aligned_cols=123 Identities=17% Similarity=0.190 Sum_probs=82.7
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHH-HHHHHHHhhccCCCCccH
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRK-MCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-l~~~L~~il~~~~~~~~~ 93 (554)
.+.|+..+...||-.||+.|++=|..-.+ +..++...|-+ ++|.|..++. ++...
T Consensus 467 ~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~---------------------~~~~daniF~eYlfP~L~~l~~---d~~~~ 522 (1431)
T KOG1240|consen 467 FVHLLMDSEADVRATALETLTELLALVRD---------------------IPPSDANIFPEYLFPHLNHLLN---DSSAQ 522 (1431)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhhccC---------------------CCcccchhhHhhhhhhhHhhhc---cCccc
Confidence 34599999999999999999988876553 33344455554 7899999988 44566
Q ss_pred hHHHHHHHHHHHHHHH-hC------------------C----C---Cch---HHHHHHHHH-HHhcCCChhHHHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANR-FA------------------S----Y---DSV---FNLCLASVT-NSISSRNLALASSCLRTT 143 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~-~g------------------~----~---~~~---~~~~L~~v~-~~l~~~~~~l~~sallcl 143 (554)
.+|-+-+.||..+|+- ++ . + +.. +...+...+ ..++.+++-|+-+.+-.+
T Consensus 523 ~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i 602 (1431)
T KOG1240|consen 523 IVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESI 602 (1431)
T ss_pred eehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 6899999999988871 11 0 0 011 222333222 344555667888888889
Q ss_pred HHHHHHhchh-----hhchhhHH
Q 041545 144 GALVNVLGLK-----ALAELPLI 161 (554)
Q Consensus 144 ~~l~~vLg~~-----~iP~LP~i 161 (554)
+.||.-+|-+ +++||+++
T Consensus 603 ~~LC~FFGk~ksND~iLshLiTf 625 (1431)
T KOG1240|consen 603 IPLCVFFGKEKSNDVILSHLITF 625 (1431)
T ss_pred HHHHHHhhhcccccchHHHHHHH
Confidence 9999988865 35555544
No 80
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.44 E-value=7.8 Score=42.36 Aligned_cols=145 Identities=13% Similarity=0.140 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHH
Q 041545 193 MASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFI 272 (554)
Q Consensus 193 ~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~ 272 (554)
..-++..|+.+..+-|.-|--|-+..+..+ +..+..+ .++.+..+.++..++++.+.| + .+
T Consensus 347 k~laLrvL~~ml~~Q~~~l~DstE~ai~K~-Leaa~ds-~~~v~~~Aeed~~~~las~~P---------------~-~~- 407 (516)
T KOG2956|consen 347 KKLALRVLREMLTNQPARLFDSTEIAICKV-LEAAKDS-QDEVMRVAEEDCLTTLASHLP---------------L-QC- 407 (516)
T ss_pred HHHHHHHHHHHHHhchHhhhchHHHHHHHH-HHHHhCC-chhHHHHHHHHHHHHHHhhCc---------------h-hH-
Confidence 445677788999999999999999888774 3333221 134555666666689998888 1 00
Q ss_pred HHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHH
Q 041545 273 LHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSV 352 (554)
Q Consensus 273 ~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~v 352 (554)
+..+-|-|.. .+..-....+.|+.+.++..+...+...++.+.=-+++|+|--+ +.|-..+
T Consensus 408 ---I~~i~~~Ilt-------~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~S---------S~VRKta 468 (516)
T KOG2956|consen 408 ---IVNISPLILT-------ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTS---------STVRKTA 468 (516)
T ss_pred ---HHHHhhHHhc-------CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCch---------HHhhhhH
Confidence 1111222211 22233446678999999999999888888888888899887632 3467789
Q ss_pred HHHHHHHHHhhcccchhhHHHHH
Q 041545 353 ISTVISLTMKLTETMFRPLFIRS 375 (554)
Q Consensus 353 i~a~~~lVlKLsE~tFrPLf~kl 375 (554)
+-|+++||-++=+..|.|.+.+|
T Consensus 469 VfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 469 VFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHhHHHHHHHHhHHhhhhHhhhc
Confidence 99999999999999999999887
No 81
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=6.6 Score=41.44 Aligned_cols=123 Identities=13% Similarity=0.068 Sum_probs=81.3
Q ss_pred HhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHH--HHHHHHHhhccCCCCccHh
Q 041545 17 ASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRK--MCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 17 ~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~--l~~~L~~il~~~~~~~~~~ 94 (554)
..|+|++..||++|+..+-.-++.++.. ++.+.+ ..+.|..++. .+....
T Consensus 131 ~~l~~~~~~lR~~Aa~Vigt~~qNNP~~-------------------------Qe~v~E~~~L~~Ll~~ls---~~~~~~ 182 (342)
T KOG2160|consen 131 GYLENSDAELRELAARVIGTAVQNNPKS-------------------------QEQVIELGALSKLLKILS---SDDPNT 182 (342)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHhcCHHH-------------------------HHHHHHcccHHHHHHHHc---cCCCch
Confidence 3899999999999999999888887742 333332 5666777776 455667
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHH--HHHHHHhcC--CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHH
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCL--ASVTNSISS--RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRK 167 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L--~~v~~~l~~--~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~ 167 (554)
.|-.|+.|+..+.+++..-...|-.+= ......+++ .+..+..=++..++-+...-..+-.-.=+..+|..+.
T Consensus 183 ~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~ 259 (342)
T KOG2160|consen 183 VRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLE 259 (342)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Confidence 899999999999999975422333221 122344444 4566777777777877776665554333333444444
No 82
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.05 E-value=60 Score=40.56 Aligned_cols=124 Identities=10% Similarity=0.084 Sum_probs=73.2
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccc----cccccCCCCCCccccccCccchHHHHH-------HHHHH-HHh
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKH----KRRRELDPDSNSRWFHLDDSAFESFRK-------MCSEV-VLL 83 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~f~~-------l~~~L-~~i 83 (554)
+..|..+.+.+|-|||.-|+.=+.-.+..-... .=..+++.. .+ .+-|+.++.... ++++. ..+
T Consensus 822 l~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Ds-sa---sVREAaldLvGrfvl~~~e~~~qyY~~i 897 (1692)
T KOG1020|consen 822 LSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDS-SA---SVREAALDLVGRFVLSIPELIFQYYDQI 897 (1692)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccc-hh---HHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 457889999999999999997554443321110 000111111 11 233444443332 22222 233
Q ss_pred hccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 041545 84 VDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGA 145 (554)
Q Consensus 84 l~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~ 145 (554)
+.++. +....+|+-++--+.-++..++. -+.++++.+.++..+.+++..+..-+...+-.
T Consensus 898 ~erIl-DtgvsVRKRvIKIlrdic~e~pd-f~~i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 898 IERIL-DTGVSVRKRVIKILRDICEETPD-FSKIVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred HhhcC-CCchhHHHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 34443 55778899888888878777753 44677777777777777777788888776654
No 83
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.90 E-value=3.3 Score=49.61 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=64.4
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|.+.|+.+++.||+.|...|-..-. ...++.|...+. +++.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~----------------------------------~~~~~~L~~aL~----D~d~ 666 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP----------------------------------PGFGPALVAALG----DGAA 666 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc----------------------------------hhHHHHHHHHHc----CCCH
Confidence 67789999999999999999983210 114566777775 4477
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALV 147 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~ 147 (554)
.+|..|+.+|..+++..+. .+.+...+.++++.+|..++-.|+.+-
T Consensus 667 ~VR~~Aa~aL~~l~~~~~~--------~~~L~~~L~~~d~~VR~~A~~aL~~~~ 712 (897)
T PRK13800 667 AVRRAAAEGLRELVEVLPP--------APALRDHLGSPDPVVRAAALDVLRALR 712 (897)
T ss_pred HHHHHHHHHHHHHHhccCc--------hHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 8999999999887654432 123445567788999999998888753
No 84
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=61 Score=38.68 Aligned_cols=157 Identities=10% Similarity=0.067 Sum_probs=98.4
Q ss_pred hhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHH
Q 041545 18 SLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKL 97 (554)
Q Consensus 18 ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq 97 (554)
.++++--++|-||...++. . ..++=.+..-|...+.--...+. ++.+..+|-
T Consensus 470 ~f~s~~g~Lrarac~vl~~-~------------------------~~~df~d~~~l~~ale~t~~~l~---~d~~lPV~V 521 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQ-F------------------------SSIDFKDPNNLSEALELTHNCLL---NDNELPVRV 521 (1010)
T ss_pred hhcCchhHHHHHHHHHHHH-H------------------------HhccCCChHHHHHHHHHHHHHhc---cCCcCchhh
Confidence 5678888999999998871 1 11223344555555555555555 355778999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHH----HhcC-CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhh
Q 041545 98 TAVSTLEVLANRFASYDSVFNLCLASVTN----SISS-RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 98 ~Al~~L~~lA~~~g~~~~~~~~~L~~v~~----~l~~-~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~ 172 (554)
.|+.||..+..+....++.+.+.++.+.+ .... ++..+ -.|+-.++..++.+..||-+.++-.+-..+-++
T Consensus 522 eAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~L----t~vme~iV~~fseElsPfA~eL~q~La~~F~k~ 597 (1010)
T KOG1991|consen 522 EAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDL----TNVMEKIVCKFSEELSPFAVELCQNLAETFLKV 597 (1010)
T ss_pred HHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHH----HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 99999999999887654555555555443 3332 23333 346788999999999999999999888877663
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 041545 173 STYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG 209 (554)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~ 209 (554)
- ..+.+++ +..+.......+++.++.+++.++-.
T Consensus 598 l--~~~~~~~-~~~ddk~iaA~GiL~Ti~Til~s~e~ 631 (1010)
T KOG1991|consen 598 L--QTSEDED-ESDDDKAIAASGILRTISTILLSLEN 631 (1010)
T ss_pred H--hccCCCC-ccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 1111111 11111223445666666666665543
No 85
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=88.40 E-value=6.8 Score=36.87 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=84.1
Q ss_pred hHHhhhcCC-hhHHHHHHHHHHHHhcccCCccccccccccCCC---------CC-CccccccC--ccchHHHH-HHHHHH
Q 041545 15 LYASLFNGE-ICTCEQALGLLCETVKDLDMAKPKHKRRRELDP---------DS-NSRWFHLD--DSAFESFR-KMCSEV 80 (554)
Q Consensus 15 ~~~ll~~~~-~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~--~~~~~~f~-~l~~~L 80 (554)
|+.+|+++. ..+||.||++|= -+-..++.+-| ...+..+ .. .......+ .+..+++- ..+..|
T Consensus 15 L~~iLk~e~s~~iR~E~lr~lG-ilGALDP~~~k--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~~L 91 (160)
T PF11865_consen 15 LLNILKTEQSQSIRREALRVLG-ILGALDPYKHK--SIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVINAL 91 (160)
T ss_pred HHHHHHhCCCHHHHHHHHHHhh-hccccCcHHHh--cccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHHHH
Confidence 455778875 999999999886 33334433222 1111111 00 11110011 12334443 477888
Q ss_pred HHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 041545 81 VLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVL 150 (554)
Q Consensus 81 ~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vL 150 (554)
..+++ +.+-......++.++-.+-+..|.. -|.+..++|..+..+.+.+.++++..+.-++.++...
T Consensus 92 ~~iL~---D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 92 MRILR---DPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHH---hhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 88888 5556667778888888888878766 5689999999999888766799999998999888754
No 86
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=57 Score=37.96 Aligned_cols=108 Identities=15% Similarity=0.221 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc--hhhhchhhHHHHHHHHhhhhh
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLG--LKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg--~~~iP~LP~imP~ll~~l~~~ 172 (554)
||.-|.+.+.++.+-|. +...+..+...+..|+.+.+.+|+.-|-+++.-+..... +++-.|.|.+|..++...+.-
T Consensus 476 L~Srace~is~~eeDfk-d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~f 554 (970)
T COG5656 476 LKSRACEFISTIEEDFK-DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTF 554 (970)
T ss_pred hHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccc
Confidence 78888888888877774 234678888999999998889999999998888877654 456889999999988855542
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 173 STYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
+ ....-..++.+++..+.-++||=.++...+
T Consensus 555 e-------------------iD~LS~vMe~fVe~fseELspfa~eLa~~L 585 (970)
T COG5656 555 E-------------------IDPLSMVMESFVEYFSEELSPFAPELAGSL 585 (970)
T ss_pred c-------------------chHHHHHHHHHHHHhHHhhchhHHHHHHHH
Confidence 1 111224568899999999999999888766
No 87
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=88.09 E-value=3.4 Score=39.87 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=85.6
Q ss_pred cchhhhHH-hhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCC
Q 041545 10 VAPVNLYA-SLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNST 88 (554)
Q Consensus 10 ~~~~~~~~-ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~ 88 (554)
-.+.+|+. +|+.|.+.||--|+.+|..=+...+++- .| +-+.+ ..+.+|-.+...-..-..++=..|...++.
T Consensus 39 ~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L-~~--Ae~~~-~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~-- 112 (182)
T PF13251_consen 39 PATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFL-AQ--AEESK-GPSGSFTSLSSTLASMIMELHRGLLLALQA-- 112 (182)
T ss_pred CCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHH-HH--HHhcC-CCCCCcccHHHHHHHHHHHHHHHHHHHHhc--
Confidence 34556777 8888999999999999997776643211 01 11111 122234333333333333444455555553
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCC--Cc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc
Q 041545 89 GESNISLKLTAVSTLEVLANRFASY--DS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLG 151 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~--~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg 151 (554)
+....+-.-.+-|+..+..+.+-. .+ .+..++..+...+.+.|.+++..++.|+|.+..+-.
T Consensus 113 -E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 113 -EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred -ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 334445556678888888887754 23 466777777777888899999999999999987643
No 88
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=88.04 E-value=26 Score=35.80 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=51.3
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHHhchhhh--chhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 041545 126 NSISSRNLALASSCLRTTGALVNVLGLKAL--AELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAV 203 (554)
Q Consensus 126 ~~l~~~~~~l~~sallcl~~l~~vLg~~~i--P~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~l 203 (554)
+.++++++.+|+-++.+++++...+....+ .....++....+.+.+ ......++.++.++
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D------------------~~~~~~~l~gl~~L 67 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD------------------HACVQPALKGLLAL 67 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc------------------HhhHHHHHHHHHHH
Confidence 457788999999999999999998886642 2233333333332221 12334447777778
Q ss_pred HHHhcccccccHHHHHHHHh
Q 041545 204 IDKLGGFLNPYLGDITELLV 223 (554)
Q Consensus 204 v~~l~~FlsPYL~~il~~l~ 223 (554)
+ +++.|-......+++.+.
T Consensus 68 ~-~~~~~~~~~~~~i~~~l~ 86 (262)
T PF14500_consen 68 V-KMKNFSPESAVKILRSLF 86 (262)
T ss_pred H-hCcCCChhhHHHHHHHHH
Confidence 7 667776666777777764
No 89
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.56 E-value=29 Score=41.04 Aligned_cols=149 Identities=16% Similarity=0.254 Sum_probs=110.4
Q ss_pred hhhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCc
Q 041545 12 PVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGES 91 (554)
Q Consensus 12 ~~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~ 91 (554)
+-++.+-+-+++-.-|.+||+=+...+.+.. ... .+-+..++..+..++. .+.
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~----------------------~~~~~~ll~~~~ki~~---kDa 307 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK--KEI----------------------VKGYTGLLGILLKIRL---KDA 307 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc--ccc----------------------ccCcchHHHHHHHHhc---cCc
Confidence 3456677888999999999999998887755 101 1222234444445544 566
Q ss_pred cHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSR 170 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~ 170 (554)
+.++-+.|+.+|..||.+.|.. .++-..+.+.+.+++......++.+.+-|+=.+++ .-.|-++++.++..++
T Consensus 308 N~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 308 NINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALK 381 (815)
T ss_pred chhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhc
Confidence 8889999999999999999976 34566777788888887778888888888888887 6677888888888776
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 041545 171 EISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG 209 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~ 209 (554)
.. +...-..+...+.+.+..+++
T Consensus 382 ~k----------------np~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 382 GK----------------NPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred CC----------------ChhhHHHHHHHHHHHHhhcCC
Confidence 52 233455667788888888886
No 90
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=87.16 E-value=5 Score=42.60 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=74.5
Q ss_pred hhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHH-
Q 041545 18 SLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLK- 96 (554)
Q Consensus 18 ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lr- 96 (554)
.+-+++...|+.||+-|. . -+.+..|+|.+..||.. .-..++.
T Consensus 186 a~~~~~~~~r~~aL~sL~----t-----------------------------D~gl~~LlPyf~~fI~~---~v~~n~~~ 229 (343)
T cd08050 186 ALVGSNEEKRREALQSLR----T-----------------------------DPGLQQLLPYFVRFIAE---GVTVNLDQ 229 (343)
T ss_pred HHhCCCHHHHHHHHHHhc----c-----------------------------CCCchhhhhHHHHHHHH---HHHhhhcc
Confidence 455567777888887766 1 22344567777777652 1111222
Q ss_pred -HHHHHHHHHHHHHhCCC-----CchHHHHHHHHHHHh----------cCCChhHHHHHHHHHHHHHHHhchhhhchhhH
Q 041545 97 -LTAVSTLEVLANRFASY-----DSVFNLCLASVTNSI----------SSRNLALASSCLRTTGALVNVLGLKALAELPL 160 (554)
Q Consensus 97 -q~Al~~L~~lA~~~g~~-----~~~~~~~L~~v~~~l----------~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~ 160 (554)
-..+..+-.++++.=.. ++++-.+++.+..|+ ..++|.+|..|--+++.+|+.++..--...|+
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~r 309 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPR 309 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 11122333333333222 567888999988776 12569999999999999999999886666677
Q ss_pred HHHHHHHhhhh
Q 041545 161 IMENVRKKSRE 171 (554)
Q Consensus 161 imP~ll~~l~~ 171 (554)
++-.+.+.+.+
T Consensus 310 i~~tl~k~l~d 320 (343)
T cd08050 310 ITRTLLKALLD 320 (343)
T ss_pred HHHHHHHHHcC
Confidence 77766665554
No 91
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.88 E-value=11 Score=41.50 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=81.3
Q ss_pred HHHHHHhCCC----CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhh
Q 041545 104 EVLANRFASY----DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQ 179 (554)
Q Consensus 104 ~~lA~~~g~~----~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~ 179 (554)
.-+|+..++. .+.+..++...-+..++++..++++++.|+|.+...+-.+...|-++++-.++..|-+
T Consensus 239 Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D-------- 310 (533)
T KOG2032|consen 239 AFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYD-------- 310 (533)
T ss_pred HHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhc--------
Confidence 3455555543 3456666666556666788899999999999999999999999999999998885533
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHH
Q 041545 180 NESNEDKTQRESLMASVLITLEAVIDKLGGF-LNPYLGDITELL 222 (554)
Q Consensus 180 ~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-lsPYL~~il~~l 222 (554)
+.+++++.-++++|..+.+..-.+ +.||+-+|-..+
T Consensus 311 -------~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 311 -------DLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred -------CCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 123678899999999999988877 889999988765
No 92
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=85.35 E-value=26 Score=33.29 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=55.7
Q ss_pred ChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccc
Q 041545 132 NLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFL 211 (554)
Q Consensus 132 ~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fl 211 (554)
|+.+|..++.++|-+|-....-+-||+|.+... |++ .+..+...++..+..++.. .++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~----L~D----------------~~~~VR~~al~~Ls~Li~~--d~i 58 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKC----LRD----------------EDPLVRKTALLVLSHLILE--DMI 58 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHH----HCC----------------CCHHHHHHHHHHHHHHHHc--Cce
Confidence 578999999999999999987777887766643 322 1345677788888888764 443
Q ss_pred c--ccH-HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhh
Q 041545 212 N--PYL-GDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDK 250 (554)
Q Consensus 212 s--PYL-~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~ 250 (554)
- +.+ ..++..+ .+.++.+.+.+...+..+..+
T Consensus 59 k~k~~l~~~~l~~l-------~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 59 KVKGQLFSRILKLL-------VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred eehhhhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHh
Confidence 3 333 5555443 122334444444444444444
No 93
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.03 E-value=2.1 Score=28.60 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=24.2
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHH
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANR 109 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~ 109 (554)
++|.+.+.++ ++++.+|.+|..|++.+++.
T Consensus 1 llp~l~~~l~----D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLN----DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-----SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcC----CCCHHHHHHHHHHHHHHHhh
Confidence 4677777777 45889999999999999874
No 94
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.70 E-value=5 Score=34.29 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHH
Q 041545 120 CLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLIT 199 (554)
Q Consensus 120 ~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsa 199 (554)
.+..+.+.+.++..++|+-++.-+..+++.-- ..+...|.++.-++..+++ .+..+-++++-+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d----------------~DsyVYL~aI~~ 66 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKD----------------EDSYVYLNAIKG 66 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCC----------------CCchHHHHHHHH
Confidence 45667777888899999999999999998877 5566678888777775554 134688999999
Q ss_pred HHHHHHHhcccccccHH
Q 041545 200 LEAVIDKLGGFLNPYLG 216 (554)
Q Consensus 200 L~~lv~~l~~FlsPYL~ 216 (554)
+..+.+..|..+.|.|-
T Consensus 67 L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 67 LAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHHHChHHHHHHHH
Confidence 99999988886655443
No 95
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=83.07 E-value=23 Score=42.47 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHh
Q 041545 72 SFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISS-RNLALASSCLRTTGALVNVL 150 (554)
Q Consensus 72 ~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~-~~~~l~~sallcl~~l~~vL 150 (554)
.....+..|.+-+. +.|..+|-+|.-.++.++.+.+.+ ....++..++++.+- ++...-..+.+++|+|+..
T Consensus 338 ivE~vie~Lls~l~----d~dt~VrWSaAKg~grvt~rlp~~--Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r- 410 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALS----DTDTVVRWSAAKGLGRVTSRLPPE--LADQVIGSVIDLFNPAEDDSAWHGACLALAELALR- 410 (1133)
T ss_pred HHHHHHHHHHHhcc----CCcchhhHHHHHHHHHHHccCcHH--HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-
Confidence 44445555555554 447789999999999999999832 455778888886543 3355556889999999853
Q ss_pred chhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHh-cccccccHHHHHHHHhhccC
Q 041545 151 GLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL-GGFLNPYLGDITELLVLCPE 227 (554)
Q Consensus 151 g~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l-~~FlsPYL~~il~~l~l~~~ 227 (554)
|--...-++.++|.+++.+.-.. .- +.-.....+-.|++=..-++...- |..+.||+..+...+.....
T Consensus 411 GlLlps~l~dVvplI~kaL~Yd~----~~----G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al 480 (1133)
T KOG1943|consen 411 GLLLPSLLEDVVPLILKALHYDV----RR----GQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL 480 (1133)
T ss_pred CCcchHHHHHHHHHHHHHhhhhh----hh----cccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh
Confidence 33333357899999888776421 00 000112234455555555555543 45577888888877633333
No 96
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=82.91 E-value=7.8 Score=49.87 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=90.9
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|..||+++...+|++|..+|.+=-..+.+ -...-.....+|.|..++.. .+.
T Consensus 613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d-----------------------~~~avv~agaIpPLV~LLss----~~~ 665 (2102)
T PLN03200 613 TLIQLLSSSKEETQEKAASVLADIFSSRQD-----------------------LCESLATDEIINPCIKLLTN----NTE 665 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCChH-----------------------HHHHHHHcCCHHHHHHHHhc----CCh
Confidence 467799999999999999888733322221 11223344688999999983 234
Q ss_pred hHHHHHHHHHHHHHHHhCCCCc--hHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHh
Q 041545 94 SLKLTAVSTLEVLANRFASYDS--VFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKK 168 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~--~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~ 168 (554)
..+..|.-+|.-+++ -|.++. .+. .+++..++.++..+..++.-++.+++.+++.-..+ .+..- ..+|++++.
T Consensus 666 ~v~keAA~AL~nL~~-~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~-~~I~~Lv~l 743 (2102)
T PLN03200 666 AVATQSARALAALSR-SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAE-DIILPLTRV 743 (2102)
T ss_pred HHHHHHHHHHHHHHh-CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhc-CcHHHHHHH
Confidence 578888899999997 344322 233 36777888898889999999999999998865333 24433 457888888
Q ss_pred hhhh
Q 041545 169 SREI 172 (554)
Q Consensus 169 l~~~ 172 (554)
+++.
T Consensus 744 Lr~G 747 (2102)
T PLN03200 744 LREG 747 (2102)
T ss_pred HHhC
Confidence 8763
No 97
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.68 E-value=54 Score=36.73 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=100.5
Q ss_pred hhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCc--cHhH
Q 041545 18 SLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGES--NISL 95 (554)
Q Consensus 18 ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~--~~~l 95 (554)
.+-.++...|.+||+-|. + .+-+..|+|.+..+|...-.-. ..++
T Consensus 215 a~~g~~~~~r~eAL~sL~------T---------------------------DsGL~~LlPyFv~fIae~vs~ni~~~nL 261 (576)
T KOG2549|consen 215 ACTGSDEPLRQEALQSLE------T---------------------------DSGLQQLLPYFVTFIAEGVSVNIVQNNL 261 (576)
T ss_pred HHhcCCHHHHHHHHHhhc------c---------------------------CccHHHHHHHHHHHHhhheeeccccccH
Confidence 344488889999998887 1 2234457788887776311110 1223
Q ss_pred HHHHHHHHHHHHHHhCCC-----CchHHHHHHHHHHHhc----------CCChhHHHHHHHHHHHHHHHhchhhhchhhH
Q 041545 96 KLTAVSTLEVLANRFASY-----DSVFNLCLASVTNSIS----------SRNLALASSCLRTTGALVNVLGLKALAELPL 160 (554)
Q Consensus 96 rq~Al~~L~~lA~~~g~~-----~~~~~~~L~~v~~~l~----------~~~~~l~~sallcl~~l~~vLg~~~iP~LP~ 160 (554)
++ +..|-.+++..=++ .|++-.+||.++.|+- +.+|.+|--+...++-+|+.++..--..-|+
T Consensus 262 ~l--L~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~R 339 (576)
T KOG2549|consen 262 EL--LIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPR 339 (576)
T ss_pred HH--HHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33 23444455544443 5688899999887751 2469999999999999999999998877777
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH-HHhcccccccHHHHHHHH
Q 041545 161 IMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVI-DKLGGFLNPYLGDITELL 222 (554)
Q Consensus 161 imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv-~~l~~FlsPYL~~il~~l 222 (554)
+.-.+.++|.+.. ...-.+.+++-.|+.+. +....++.|.|..+-..+
T Consensus 340 it~tl~k~l~D~~--------------~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l 388 (576)
T KOG2549|consen 340 ITRTLSKALLDNK--------------KPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERL 388 (576)
T ss_pred HHHHHHHHhcCCC--------------CCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHh
Confidence 7777777665521 11123344444443333 455677889999998875
No 98
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=82.45 E-value=40 Score=34.28 Aligned_cols=125 Identities=17% Similarity=0.067 Sum_probs=77.7
Q ss_pred hhHHhhhc-CChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCC
Q 041545 14 NLYASLFN-GEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGE 90 (554)
Q Consensus 14 ~~~~ll~~-~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~ 90 (554)
+|+.+|+. .||.++++|+-.+.+-..... .++... .-++.+..++..
T Consensus 16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~--------------------------nq~~Ir~~Ggi~lI~~lL~~---- 65 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQEKALIALGNSAAFPF--------------------------NQDIIRDLGGISLIGSLLND---- 65 (254)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccChh--------------------------HHHHHHHcCCHHHHHHHcCC----
Confidence 57789995 579999999999985322111 122222 256667777763
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHh
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISS--RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKK 168 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~--~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~ 168 (554)
.+..+|..|+.|+.-++..... .......++.+.+.+.+ .+.++.-+++-.++.|+-. .+.=..+...+|.++..
T Consensus 66 p~~~vr~~AL~aL~Nls~~~en-~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~L 142 (254)
T PF04826_consen 66 PNPSVREKALNALNNLSVNDEN-QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSL 142 (254)
T ss_pred CChHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHH
Confidence 3667999999998877654322 12345566666665433 3678888999999998633 22222344455655555
Q ss_pred hhh
Q 041545 169 SRE 171 (554)
Q Consensus 169 l~~ 171 (554)
+..
T Consensus 143 L~~ 145 (254)
T PF04826_consen 143 LSS 145 (254)
T ss_pred HHc
Confidence 543
No 99
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=82.41 E-value=8.2 Score=32.89 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=48.6
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHH-Hhchhhhchhh
Q 041545 90 ESNISLKLTAVSTLEVLANRFASYDSV-FNLCLASVTNSISSRN--LALASSCLRTTGALVN-VLGLKALAELP 159 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~~~~-~~~~L~~v~~~l~~~~--~~l~~sallcl~~l~~-vLg~~~iP~LP 159 (554)
++.+.+|.-|...|..|+++||...+. -..++....+.+.+++ ....--|+.+++++.. +...-++|.++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAVRALILPNLK 90 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 568999999999999999999987664 4556666777776543 4445567777777633 22223456554
No 100
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=82.37 E-value=47 Score=43.18 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=88.5
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-Cc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK 153 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~ 153 (554)
-++.|..+++. ++...|+.|..+|..++..-... .. .....++.++..+++.+..++.-+-.+++.+.+.....
T Consensus 610 gL~~Lv~LL~s----gs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~ 685 (2102)
T PLN03200 610 ALRTLIQLLSS----SKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN 685 (2102)
T ss_pred cHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH
Confidence 45666666662 35568888888888877622111 11 23456777788888888889999999999999855444
Q ss_pred hhchhh--HHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHh---cccc-cccHHHHHHHHhhccC
Q 041545 154 ALAELP--LIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL---GGFL-NPYLGDITELLVLCPE 227 (554)
Q Consensus 154 ~iP~LP--~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l---~~Fl-sPYL~~il~~l~l~~~ 227 (554)
-..++- ..+|++++.++.. +..+..-++.+|..++..- ..+. ...++.++..+.
T Consensus 686 q~~~~v~~GaV~pL~~LL~~~----------------d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr---- 745 (2102)
T PLN03200 686 RKVSYAAEDAIKPLIKLAKSS----------------SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR---- 745 (2102)
T ss_pred HHHHHHHcCCHHHHHHHHhCC----------------ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH----
Confidence 344432 3789999988652 1224444555554444421 1222 234455555431
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhh
Q 041545 228 YLPGSDPKLKVKADAVRRLLTDKIQ 252 (554)
Q Consensus 228 ~~~~~~~~~~s~~~~l~~~la~~v~ 252 (554)
+|.+++.+.+..+| -.|.++-|
T Consensus 746 --~G~~~~k~~Aa~AL-~~L~~~~~ 767 (2102)
T PLN03200 746 --EGTLEGKRNAARAL-AQLLKHFP 767 (2102)
T ss_pred --hCChHHHHHHHHHH-HHHHhCCC
Confidence 34455666666666 44555655
No 101
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.21 E-value=26 Score=41.49 Aligned_cols=128 Identities=11% Similarity=0.067 Sum_probs=91.3
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHhchh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSI-SSRNLALASSCLRTTGALVNVLGLK 153 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l-~~~~~~l~~sallcl~~l~~vLg~~ 153 (554)
+.+.+...++..-.+.+|--|..|+..+.-+.+.-+++ ...+...+...+... .+.+-.+..-+..|++.|+..++..
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 45555555554335779999999999998888877733 334555666666554 4568889999999999999999999
Q ss_pred hhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Q 041545 154 ALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITEL 221 (554)
Q Consensus 154 ~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~ 221 (554)
+-+|--.+.|.++..+++. ...+..+++.++-++... .-++-+.+.|+..
T Consensus 330 ~~~~~~~v~p~lld~lkek----------------k~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEK----------------KSELRDALLKALDAILNS--TPLSKMSEAILEA 379 (815)
T ss_pred hHHHHHhhcchHHHHhhhc----------------cHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence 9999999999999987762 234666777777777773 2233333444443
No 102
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=82.07 E-value=64 Score=33.08 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCC------chHHHHHHH-HHHHhc--------CCChhHHHHHH
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYD------SVFNLCLAS-VTNSIS--------SRNLALASSCL 140 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~------~~~~~~L~~-v~~~l~--------~~~~~l~~sal 140 (554)
++|.+..+++ +.+...|..++.+|..+.++++... .-+.+++.. +..++. .+...+...++
T Consensus 120 iiP~iL~llD----D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 120 IIPPILNLLD----DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred HHhhHHHHhc----CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 5666666666 3378899999999999999888653 112233333 334443 35677889999
Q ss_pred HHHHHHHHHhc-hhhhchhhHHHHHHHH-hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHH
Q 041545 141 RTTGALVNVLG-LKALAELPLIMENVRK-KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDI 218 (554)
Q Consensus 141 lcl~~l~~vLg-~~~iP~LP~imP~ll~-~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~i 218 (554)
-|+-.++.+.. ...-++...+...+-+ ++...... .......+....+..+..+++.+|-+...||.++
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~---------~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~ri 266 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHE---------SSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRI 266 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceec---------cccCchhHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999988873 3333444433333333 22221110 0011345778888889999999999999999999
Q ss_pred HHHH
Q 041545 219 TELL 222 (554)
Q Consensus 219 l~~l 222 (554)
+..+
T Consensus 267 i~~l 270 (282)
T PF10521_consen 267 IPVL 270 (282)
T ss_pred HHHH
Confidence 9886
No 103
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=81.61 E-value=1.2e+02 Score=36.01 Aligned_cols=201 Identities=15% Similarity=0.204 Sum_probs=106.8
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHhchhh-hchhhHHHHHHH
Q 041545 89 GESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSR-NLALASSCLRTTGALVNVLGLKA-LAELPLIMENVR 166 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~-~~~l~~sallcl~~l~~vLg~~~-iP~LP~imP~ll 166 (554)
-.+-..+-.-|.-++...+.++.-..+.+...|...+..++.+ .+.++.+++.++...| |.+. .|++|.|+..++
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLL 536 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHH
Confidence 3445555558888888777776543456778888888777654 4666766666555554 8885 899999999888
Q ss_pred HhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc---ccccHHHHHHHHhhccCCCCCCChhHHHHHHHH
Q 041545 167 KKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF---LNPYLGDITELLVLCPEYLPGSDPKLKVKADAV 243 (554)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F---lsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l 243 (554)
+...+. .++++..+.-+|+.+++-=|.| +..-+-+.+-.+++. |. .|+.+.+....+
T Consensus 537 qlas~~----------------s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k--~s--~DP~V~~~~qd~ 596 (1005)
T KOG2274|consen 537 QLASKS----------------SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK--YS--EDPQVASLAQDL 596 (1005)
T ss_pred HHcccc----------------cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH--hc--CCchHHHHHHHH
Confidence 855442 1223333444444444433333 222222222222111 11 134444444444
Q ss_pred HHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhh-cCcchHHHHHHHHHHHHHhcCCCccccchH
Q 041545 244 RRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVD-AGDSSLVIAFEILGNIISRMDRSSIGGFHG 322 (554)
Q Consensus 244 ~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~-~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~ 322 (554)
.+-+..... ++.+. ...++|.+......-.. ....-+..-.++|...+++-++. -..
T Consensus 597 f~el~q~~~--------------~~g~m----~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p----L~~ 654 (1005)
T KOG2274|consen 597 FEELLQIAA--------------NYGPM----QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP----LPN 654 (1005)
T ss_pred HHHHHHHHH--------------hhcch----HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC----ccH
Confidence 344433222 22222 66788988888764110 01111334446666666665553 334
Q ss_pred HHHHHHHHHhhh
Q 041545 323 KIFDQCLLALDL 334 (554)
Q Consensus 323 ~l~~~~l~aLd~ 334 (554)
.+...++.|.-.
T Consensus 655 ~l~~~~FpaVak 666 (1005)
T KOG2274|consen 655 LLICYAFPAVAK 666 (1005)
T ss_pred HHHHHHhHHhHh
Confidence 555556655533
No 104
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.51 E-value=5.9 Score=46.47 Aligned_cols=120 Identities=9% Similarity=0.066 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh-chhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHH
Q 041545 116 VFNLCLASVTNSISSRNLALASSCLRTTGALVNVL-GLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMA 194 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vL-g~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~ 194 (554)
-|.++.|..++.+...+...+..-+-.++.+.... .+-.+|++|.+.|-+++.+.=. +-.+..
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~----------------D~~v~v 927 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP----------------DVIVRV 927 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC----------------ccchhh
Confidence 47788888888876544555555555555554433 3456999999999999866421 123678
Q ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCC-CChhHHHHHHHHHHHHHhhhh
Q 041545 195 SVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPG-SDPKLKVKADAVRRLLTDKIQ 252 (554)
Q Consensus 195 s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~-~~~~~~s~~~~l~~~la~~v~ 252 (554)
+++++++.+....+.-++-|+..++..+...+.-... +-.++..+++++ ..|+++.|
T Consensus 928 stl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL-~aL~~~~P 985 (1030)
T KOG1967|consen 928 STLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCL-NALTRRLP 985 (1030)
T ss_pred hHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHH-HHHhccCC
Confidence 9999999999999999999999999876222221111 112445556666 67777788
No 105
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=80.00 E-value=9.6 Score=33.77 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 041545 72 SFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVL 150 (554)
Q Consensus 72 ~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vL 150 (554)
++..++|.+...++. +...++|-+++.-+..+|.+.+=++..+..++..+.......+. ...++.|++.++...
T Consensus 3 ~l~~lLP~l~~~L~~---s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKS---SSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHcc---CCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 455678888888873 34558999999999999999986556777777777776654333 577899999999665
No 106
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.50 E-value=32 Score=36.99 Aligned_cols=126 Identities=12% Similarity=0.091 Sum_probs=98.6
Q ss_pred hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHH
Q 041545 19 LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLT 98 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~ 98 (554)
+++....||.-|+.=|-.-+.++.. ....+...+++.+...+- .++...|+.
T Consensus 67 lkHhNakvRkdal~glkd~l~s~p~------------------------~l~~~~~~ll~~~~~~i~----D~~~~vR~~ 118 (393)
T KOG2149|consen 67 LKHHNAKVRKDALNGLKDLLKSHPA------------------------ELQSHLYALLQKLRELIL----DDDSLVRDA 118 (393)
T ss_pred hcCchHhhhHHHHHHHHHHHHhChH------------------------HHHHHHHHHHHHhhhhhc----CccccHHHH
Confidence 6788899999999888876666442 113355566666666665 446679999
Q ss_pred HHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhh
Q 041545 99 AVSTLEVLANRFASYD--SVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 99 Al~~L~~lA~~~g~~~--~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~ 172 (554)
....++.+.-.-++++ |.+.-+++.+...+....+.++..++.++..+..-+++.++-+.-.+.+......+..
T Consensus 119 ~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~ 194 (393)
T KOG2149|consen 119 LYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKL 194 (393)
T ss_pred HHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888874 4566677777777887889999999999999999999999988888777777666553
No 107
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.73 E-value=15 Score=43.99 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=17.1
Q ss_pred hhHHhhhcCChhHHHHHHHHHH
Q 041545 14 NLYASLFNGEICTCEQALGLLC 35 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~ 35 (554)
-|..+|..+++.||.-|..-|.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLA 767 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHH
Confidence 3566788888888888887776
No 108
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.65 E-value=32 Score=35.95 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHH
Q 041545 118 NLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVL 197 (554)
Q Consensus 118 ~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~l 197 (554)
...+..+...+.+++|.....++..+-.++.......-|.|-.++..+++.++.. ...+.-++|
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl----------------RS~VsraA~ 150 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL----------------RSAVSRAAC 150 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh----------------HHHHHHHHH
Confidence 3457777888999999999999999999999999889999999999999988763 234677888
Q ss_pred HHHHHHHHHhcccccccHHHHHHHH
Q 041545 198 ITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 198 saL~~lv~~l~~FlsPYL~~il~~l 222 (554)
.+++.+++.+...+..-++..+.++
T Consensus 151 ~t~~difs~ln~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 151 MTLADIFSSLNNSIDQELDDLVTQL 175 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877777777765
No 109
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=77.58 E-value=1.3e+02 Score=34.06 Aligned_cols=253 Identities=12% Similarity=0.112 Sum_probs=106.4
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
++.|..-.|..||++|+.=|-.=- ....++..++...|.++++. ++..+..
T Consensus 64 ~~DLcEDed~~iR~~aik~lp~~c----------------------------k~~~~~v~kvaDvL~QlL~t-dd~~E~~ 114 (556)
T PF05918_consen 64 QLDLCEDEDVQIRKQAIKGLPQLC----------------------------KDNPEHVSKVADVLVQLLQT-DDPVELD 114 (556)
T ss_dssp HHHHHT-SSHHHHHHHHHHGGGG------------------------------T--T-HHHHHHHHHHHTT----HHHHH
T ss_pred HHHHHhcccHHHHHHHHHhHHHHH----------------------------HhHHHHHhHHHHHHHHHHhc-ccHHHHH
Confidence 455667788888888877665222 22234555677777777773 2233333
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhh
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIST 174 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~ 174 (554)
..+.|+.++ -+.-++ ..+..++..+... .+.+..+|+-++-++..=...++...+..=..+...++..++..
T Consensus 115 ~v~~sL~~l---l~~d~k--~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkv-- 186 (556)
T PF05918_consen 115 AVKNSLMSL---LKQDPK--GTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKV-- 186 (556)
T ss_dssp HHHHHHHHH---HHH-HH--HHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHH---HhcCcH--HHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHH--
Confidence 444443333 222111 1233333333211 13567788888877776666666666552223333333333321
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc--cc--ccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhh
Q 041545 175 YVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF--LN--PYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDK 250 (554)
Q Consensus 175 ~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F--ls--PYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~ 250 (554)
+.+.+. + .-.+.+.++ ..++.| .. +-..+++..+.-.+.+....+......++.+..++-..
T Consensus 187 L~DVTa----e---EF~l~m~lL-------~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~A 252 (556)
T PF05918_consen 187 LQDVTA----E---EFELFMSLL-------KSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQA 252 (556)
T ss_dssp CTT--H----H---HHHHHHHHH-------HTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHH
T ss_pred HHhccH----H---HHHHHHHHH-------HhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHh
Confidence 111110 0 112333333 444443 11 22233333321111111111111122455555555555
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHH
Q 041545 251 IQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLL 330 (554)
Q Consensus 251 v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~ 330 (554)
+| ..+-..+. -+++.-+.+.++|.+.+. +...=..++..+++....++........+.+|+.++.
T Consensus 253 lp------~fs~~v~S--skfv~y~~~kvlP~l~~l-------~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 253 LP------FFSRGVSS--SKFVNYMCEKVLPKLSDL-------PEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKK 317 (556)
T ss_dssp GG------G-BTTB----HHHHHHHHHHTCCCTT------------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHT
T ss_pred hH------HhcCCCCh--HHHHHHHHHHhcCChhhC-------ChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 55 10111110 112222266677844333 1122337889999999988876667777888888776
Q ss_pred Hhh
Q 041545 331 ALD 333 (554)
Q Consensus 331 aLd 333 (554)
-+=
T Consensus 318 ymP 320 (556)
T PF05918_consen 318 YMP 320 (556)
T ss_dssp TS-
T ss_pred hCC
Confidence 554
No 110
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.19 E-value=29 Score=36.09 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=70.3
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
++.+|.++|.+++.+|..+|..=+.+.+.- ....-.+.++.+..++.....+++.+
T Consensus 110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~------------------------~~~~~~~~l~~ll~~L~~~l~~~~~~ 165 (312)
T PF03224_consen 110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKR------------------------SEKLVKEALPKLLQWLSSQLSSSDSE 165 (312)
T ss_dssp HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--------------------------HHHHHHHHHHHHHHHH-TT-HHHH-
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCCcc------------------------ccchHHHHHHHHHHHHHHhhcCCCcc
Confidence 455999999999999999999777665521 01111455667777776544466677
Q ss_pred HHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHh------c-CCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHH
Q 041545 95 LKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSI------S-SRNLALASSCLRTTGALVNVLGLKALAEL--PLIME 163 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l------~-~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP 163 (554)
++..|+.|+..+.+.=.- +..| ...++.+.+.+ + ..+..+.=.+++|+=-++ +-+++++.+ ..++|
T Consensus 166 ~~~~av~~L~~LL~~~~~-R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~ 242 (312)
T PF03224_consen 166 LQYIAVQCLQNLLRSKEY-RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIP 242 (312)
T ss_dssp --HHHHHHHHHHHTSHHH-HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHH
T ss_pred hHHHHHHHHHHHhCcchh-HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHH
Confidence 889999999888742110 1222 22333333333 1 133455555666654332 333333333 23888
Q ss_pred HHHHhhhhh
Q 041545 164 NVRKKSREI 172 (554)
Q Consensus 164 ~ll~~l~~~ 172 (554)
.++++++..
T Consensus 243 ~L~~i~~~~ 251 (312)
T PF03224_consen 243 LLADILKDS 251 (312)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHHHhc
Confidence 888888764
No 111
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.87 E-value=61 Score=36.36 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=81.8
Q ss_pred HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh
Q 041545 75 KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSV-FNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK 153 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~-~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~ 153 (554)
..||++.+++.+ -.++.-+|+|+..-++.+.+=+.. +|. +..++..+..+++.. ++...+-+|+-.+|..+...
T Consensus 426 ~i~pevl~~i~n--lp~Q~~~~~ts~ll~g~~~ew~~~-~p~~le~v~~~~~~~~~~~--~~as~~a~~~~~i~~~c~~~ 500 (559)
T KOG2081|consen 426 TIMPEVLKLICN--LPEQAPLRYTSILLLGEYSEWVEQ-HPELLEPVLRYIRQGLQLK--RLASAAALAFHRICSACRVQ 500 (559)
T ss_pred chHHHHHHHHhC--CccchhHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHH
Confidence 478888888775 344555999999999999998876 675 444555555666532 37788889999999999999
Q ss_pred hhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-ccccHHHHH
Q 041545 154 ALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-LNPYLGDIT 219 (554)
Q Consensus 154 ~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-lsPYL~~il 219 (554)
.-+++|.+.--+ ..+...+. +++... .+-.++.++.++|.. ..+.++++.
T Consensus 501 ~~~l~~~~~~l~-~~l~~~~~--------------~~e~a~-l~~~~s~i~~~lp~~k~~~~~~el~ 551 (559)
T KOG2081|consen 501 MTCLIPSLLELI-RSLDSTQI--------------NEEAAC-LLQGISLIISNLPAHKAKIALEELC 551 (559)
T ss_pred hhhhhHHHHHHH-HHHHHHhc--------------cHHHHH-HHHHHHHHHhcCCHhhhhHHHHHHh
Confidence 888887776433 23333221 122222 566667777888765 445555443
No 112
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.52 E-value=1.7e+02 Score=34.14 Aligned_cols=189 Identities=15% Similarity=0.180 Sum_probs=118.0
Q ss_pred hhhhHHhhhc----CChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCcccc-----ccCccchHHHHHHHHHHHH
Q 041545 12 PVNLYASLFN----GEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWF-----HLDDSAFESFRKMCSEVVL 82 (554)
Q Consensus 12 ~~~~~~ll~~----~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~f~~l~~~L~~ 82 (554)
+|+++-||++ .|+.+|.+-.+.|+.=|.-.. ..++-|+-.+.|.+--.-|. .--|++.+.+..-|.+|-.
T Consensus 258 ~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~-~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 258 QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQ-EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQ 336 (938)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccc-cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4677777775 578999988888775443322 11122212222222111111 1236667778889999999
Q ss_pred hhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhchhhhchhhHH
Q 041545 83 LVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSIS-SRNLALASSCLRTTGALVNVLGLKALAELPLI 161 (554)
Q Consensus 83 il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vLg~~~iP~LP~i 161 (554)
++.. -+.++|=-|++++-.+|.. +..+.....-...++..+. ..|-.+|--++=.+=.||++=.++. |
T Consensus 337 fls~----rE~NiRYLaLEsm~~L~ss-~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~------I 405 (938)
T KOG1077|consen 337 FLSH----RETNIRYLALESMCKLASS-EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ------I 405 (938)
T ss_pred Hhhc----ccccchhhhHHHHHHHHhc-cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH------H
Confidence 9984 2567998888888877765 2112245555777888887 5788999999999999999887764 4
Q ss_pred HHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCC
Q 041545 162 MENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEY 228 (554)
Q Consensus 162 mP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~ 228 (554)
+.-+++.+....+ + ..+++ ..=+.-+.|+...-++=|+.-|++.+...-.|
T Consensus 406 V~elLqYL~tAd~---s---------ireei----vlKvAILaEKyAtDy~WyVdviLqLiriagd~ 456 (938)
T KOG1077|consen 406 VAELLQYLETADY---S---------IREEI----VLKVAILAEKYATDYSWYVDVILQLIRIAGDY 456 (938)
T ss_pred HHHHHHHHhhcch---H---------HHHHH----HHHHHHHHHHhcCCcchhHHHHHHHHHHhccc
Confidence 5556655544221 1 11111 22223455888888888888888887555444
No 113
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.26 E-value=1.7e+02 Score=34.12 Aligned_cols=86 Identities=13% Similarity=0.218 Sum_probs=70.4
Q ss_pred HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545 75 KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
.+.+.+..++.. +-.=+|..|+..+=.+..+|+. .+.++.+...+.+..+|+.|.++++..+-++++.=-.-.
T Consensus 144 DLa~Dv~tLL~s----skpYvRKkAIl~lykvFLkYPe---Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 144 DLADDVFTLLNS----SKPYVRKKAILLLYKVFLKYPE---ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHHHhc----CchHHHHHHHHHHHHHHHhhhH---hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 577777777763 3445899999999988888863 789999999999999999999999999999999887778
Q ss_pred hchhhHHHHHHHH
Q 041545 155 LAELPLIMENVRK 167 (554)
Q Consensus 155 iP~LP~imP~ll~ 167 (554)
+|.-|-+..-+..
T Consensus 217 L~LAP~ffklltt 229 (877)
T KOG1059|consen 217 LQLAPLFYKLLVT 229 (877)
T ss_pred ccccHHHHHHHhc
Confidence 8888877765443
No 114
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=75.13 E-value=1.1e+02 Score=31.96 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=48.8
Q ss_pred CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc
Q 041545 131 RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF 210 (554)
Q Consensus 131 ~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F 210 (554)
.+...+-.++-|+ +-=|=|-+++|..+..+.+.- + ..-.+.+++..++-....+.++---|
T Consensus 210 s~~~~r~aAl~sL---------r~dsGlhQLvPYFi~f~~eqi-----t-----~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 210 SDEQTRDAALESL---------RNDSGLHQLVPYFIHFFNEQI-----T-----KNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHh---------ccCccHHHHHHHHHHHHHHHH-----H-----HhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 3455555565554 223445677777777665421 1 11235667888888889999998889
Q ss_pred ccccHHHHHHHH
Q 041545 211 LNPYLGDITELL 222 (554)
Q Consensus 211 lsPYL~~il~~l 222 (554)
+-||+.+++.-+
T Consensus 271 vdPY~hqlmPSi 282 (450)
T COG5095 271 VDPYLHQLMPSI 282 (450)
T ss_pred ecHHHHHHHHHH
Confidence 999999999665
No 115
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=73.45 E-value=1.3e+02 Score=32.09 Aligned_cols=333 Identities=13% Similarity=0.079 Sum_probs=165.9
Q ss_pred hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCC---CCccHhH
Q 041545 19 LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNST---GESNISL 95 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~---~~~~~~l 95 (554)
|..++..-|.-|--.|+..++..+..+. .+.-+.++.-++..+..=+.... +..+..+
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~-------------------~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L 62 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPD-------------------RQALQDKMSLLLQFIQRDISSSSSKGDPFDSRL 62 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCc-------------------HHHHHHHHHHHHHHHHHHHhcccCCCCCcchHH
Confidence 3456777888888889999988765321 11223333334443333333211 2246667
Q ss_pred HHHHHHHHHHHHHHhC--CC-CchHHH-HHHHHHHHhcC--CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhh
Q 041545 96 KLTAVSTLEVLANRFA--SY-DSVFNL-CLASVTNSISS--RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKS 169 (554)
Q Consensus 96 rq~Al~~L~~lA~~~g--~~-~~~~~~-~L~~v~~~l~~--~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l 169 (554)
-+.|+-+++.+-.... +. ...+.. ++...++.+.+ .+..+....+-|++. ..++++.++ ...+..++..+
T Consensus 63 ~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~--~~~~~~l~~~l 138 (372)
T PF12231_consen 63 VIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMT--SDRVERLLAAL 138 (372)
T ss_pred HHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccc--hhhHHHHHHHH
Confidence 7777777776543221 11 123333 56666666643 467788888888775 566666432 23333444444
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccc----cHHHHHHHHhhccCCCCCCChhHHHHHHHHHH
Q 041545 170 REISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNP----YLGDITELLVLCPEYLPGSDPKLKVKADAVRR 245 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsP----YL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~ 245 (554)
.... +.-....+....+.++.+++...|..|.. |++.++..++.+ .+....++..+..
T Consensus 139 ~~i~-----------~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~-------~k~ir~~a~~l~~ 200 (372)
T PF12231_consen 139 HNIK-----------NRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSS-------AKDIRTKAISLLL 200 (372)
T ss_pred HHhh-----------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------chHHHHHHHHHHH
Confidence 4422 00123446777888889999999887764 555555554211 1233333444434
Q ss_pred HHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHH
Q 041545 246 LLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIF 325 (554)
Q Consensus 246 ~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~ 325 (554)
.++..++ + -+.+-..+.+.++....++ .-+..+++-|...+..-+. ..+...+.
T Consensus 201 ~~~~~l~---~-------------------~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~---~~~a~~iW 254 (372)
T PF12231_consen 201 EAKKCLG---P-------------------NKELSKSVLEDLQRSLENG-KLIQLYCERLKEMIKSKDE---YKLAMQIW 254 (372)
T ss_pred HHHHHhC---h-------------------hHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHhCcCC---cchHHHHH
Confidence 4443443 0 1112223333333322223 3333455555555554322 34566666
Q ss_pred HHHHHHhhhhh-hc-------------cc-ChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccc
Q 041545 326 DQCLLALDLRR-QH-------------RV-SIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMK 390 (554)
Q Consensus 326 ~~~l~aLd~R~-~~-------------~~-~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~ 390 (554)
..+...|..++ .. .+ +.+...++++...=-.+-+++..++.+.+....=|...-..........+
T Consensus 255 ~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~ 334 (372)
T PF12231_consen 255 SVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSK 334 (372)
T ss_pred HHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCcccccc
Confidence 66666664321 10 01 22223344443332222235566665554333323222211111111111
Q ss_pred cccchhHHHHHHHHHHHHHhcchhhccc
Q 041545 391 SKSIDRAIVFYSLVNKLAESHRSLFVPY 418 (554)
Q Consensus 391 ~~~~~R~itfy~l~~~l~e~LKslftpy 418 (554)
.+...|-..++++.+-++-.++...+|.
T Consensus 335 ~~~~~~~~ll~~l~~lly~~f~p~~~~~ 362 (372)
T PF12231_consen 335 TKEEVWWYLLYSLCNLLYYAFRPSASPL 362 (372)
T ss_pred ccHHHHHHHHHHHhchHHHHhCCCCCHH
Confidence 1225688888888888888887666553
No 116
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.72 E-value=2e+02 Score=33.87 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHH
Q 041545 116 VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMAS 195 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s 195 (554)
...-+|..+--++.+.++.+.-++ +.+---+.++. ..-+|+.+++..+... ..++.-
T Consensus 284 D~~lLL~stkpLl~S~n~sVVmA~----aql~y~lAP~~--~~~~i~kaLvrLLrs~-----------------~~vqyv 340 (968)
T KOG1060|consen 284 DLKLLLQSTKPLLQSRNPSVVMAV----AQLFYHLAPKN--QVTKIAKALVRLLRSN-----------------REVQYV 340 (968)
T ss_pred cHHHHHHhccHHHhcCCcHHHHHH----HhHHHhhCCHH--HHHHHHHHHHHHHhcC-----------------Ccchhh
Confidence 344444444444555555443322 22222222222 5667788888876652 235666
Q ss_pred HHHHHHHHHHHhcccccccHHHHHH
Q 041545 196 VLITLEAVIDKLGGFLNPYLGDITE 220 (554)
Q Consensus 196 ~lsaL~~lv~~l~~FlsPYL~~il~ 220 (554)
++..+..+...-|..|-||++....
T Consensus 341 vL~nIa~~s~~~~~lF~P~lKsFfv 365 (968)
T KOG1060|consen 341 VLQNIATISIKRPTLFEPHLKSFFV 365 (968)
T ss_pred hHHHHHHHHhcchhhhhhhhhceEe
Confidence 7778888889999999999987643
No 117
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.88 E-value=49 Score=38.47 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=79.2
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccC---CCC
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNS---TGE 90 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~---~~~ 90 (554)
..+-.|..+|..||+|+|++.=.=+..+. +..+..-|..=+..+ +.+
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvssrN------------------------------vediv~~Lkke~~kT~~~e~d 370 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVSSRN------------------------------VEDIVQFLKKEVMKTHNEESD 370 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhhhcc------------------------------HHHHHHHHHHHHHhccccccc
Confidence 34568999999999999998763332222 222333332222211 224
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhh
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSR 170 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~ 170 (554)
+....||.-+.++...|-+|+. +...+.+.+.+.|++.+..-....+.++-+..+.+-.-- ..++..++..+.
T Consensus 371 ~~~~yRqlLiktih~cav~Fp~---~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----~~ii~~l~~~~~ 443 (948)
T KOG1058|consen 371 DNGKYRQLLIKTIHACAVKFPE---VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----ASIIEKLLETFP 443 (948)
T ss_pred cchHHHHHHHHHHHHHhhcChH---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----HHHHHHHHHhhh
Confidence 4555899999999999999974 566677888888988888777788888888776543211 134455555555
Q ss_pred hh
Q 041545 171 EI 172 (554)
Q Consensus 171 ~~ 172 (554)
+.
T Consensus 444 ~i 445 (948)
T KOG1058|consen 444 QI 445 (948)
T ss_pred hh
Confidence 53
No 118
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=70.79 E-value=19 Score=46.13 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=89.6
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccC----C--
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNS----T-- 88 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~----~-- 88 (554)
|..+...+.+.||.+|++.|=.-+..++. +=++..| ..-|..++-.|...++.. .
T Consensus 1352 Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~------------~Fs~~~W-------~~if~~VLFPIFd~l~~~~~~~~~~ 1412 (1780)
T PLN03076 1352 LSELSFDPRPEIRKSALQVLFDTLRNHGH------------LFSLPLW-------ERVFESVLFPIFDYVRHAIDPSGGD 1412 (1780)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhhc------------cCCHHHH-------HHHHHHHHHHHHHHHHHhhcccccc
Confidence 34456678899999999999988877663 2233445 445665555555555421 0
Q ss_pred ---------C----CccHhHHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc
Q 041545 89 ---------G----ESNISLKLTAVSTLEVLANRFASY----DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLG 151 (554)
Q Consensus 89 ---------~----~~~~~lrq~Al~~L~~lA~~~g~~----~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg 151 (554)
+ +...-+..|...||..+..-|.+- .+.+...+.....|+.+++..+...+..|+-.++...|
T Consensus 1413 ~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1413 EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 0 001115788889999988888764 22455555566678888999999999999999999888
Q ss_pred hhhh-chhhHHHHHHHHhh
Q 041545 152 LKAL-AELPLIMENVRKKS 169 (554)
Q Consensus 152 ~~~i-P~LP~imP~ll~~l 169 (554)
.+|- .+--.++-.+.+.+
T Consensus 1493 ~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1493 HLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 8773 23344444433333
No 119
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=70.36 E-value=21 Score=37.91 Aligned_cols=77 Identities=10% Similarity=0.105 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhhccCC------CCccHhHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCChhH--HHHHH
Q 041545 70 FESFRKMCSEVVLLVDNST------GESNISLKLTAVSTLEVLANRFASYDSV-FNLCLASVTNSISSRNLAL--ASSCL 140 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~------~~~~~~lrq~Al~~L~~lA~~~g~~~~~-~~~~L~~v~~~l~~~~~~l--~~sal 140 (554)
.+|+..+||.+..++-... .++.|.||.-|...|..|+++||...+. -..++....+.+.++..++ .--|+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi 332 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI 332 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence 7899999999998884332 3567899999999999999999998774 4456666667666544333 33445
Q ss_pred HHHHHH
Q 041545 141 RTTGAL 146 (554)
Q Consensus 141 lcl~~l 146 (554)
.+++.+
T Consensus 333 ~GL~~l 338 (343)
T cd08050 333 VGLSAL 338 (343)
T ss_pred HHHHHh
Confidence 555544
No 120
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=69.88 E-value=1.5e+02 Score=31.03 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=108.5
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhH
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISL 95 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~l 95 (554)
...|..-....|..+|+-|+.-+.++-. .+--..++..++..+...++.... .=
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~----------------------~d~v~~~~~tL~~~~~k~lkkg~~----~E 102 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYL----------------------PDFVEDRRETLLDALLKSLKKGKS----EE 102 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhccc----------------------HHHHHHHHHHHHHHHHHHhccCCH----HH
Confidence 4466666799999999999988877542 222345667789999999985321 22
Q ss_pred HHHHHHHHHHHHHHhC--CCCc-hHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHHh
Q 041545 96 KLTAVSTLEVLANRFA--SYDS-VFNLCLASVTNSISS--RNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRKK 168 (554)
Q Consensus 96 rq~Al~~L~~lA~~~g--~~~~-~~~~~L~~v~~~l~~--~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~~ 168 (554)
+..|+.++.++|--+| .+.. .|..+.+.....+.. ....+|.+++.|+|.++-+.|...--.. =..|..+...
T Consensus 103 ~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~ 182 (309)
T PF05004_consen 103 QALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLL 182 (309)
T ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Confidence 4567888999999988 3333 577777777776654 3456778889999999998877642221 1233322111
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHH
Q 041545 169 SREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-LNPYLGDITELL 222 (554)
Q Consensus 169 l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-lsPYL~~il~~l 222 (554)
. +...+.....-....+..++.+++.+-+-++..+|.. +..+++..+..+
T Consensus 183 ~----~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l 233 (309)
T PF05004_consen 183 S----ILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPAL 233 (309)
T ss_pred H----hcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 1100000000000113468889999998888877762 334455555443
No 121
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=69.73 E-value=12 Score=45.38 Aligned_cols=97 Identities=14% Similarity=0.170 Sum_probs=68.2
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cC-CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSI----SS-RNLALASSCLRTTGALVNVLGLKALAELPLIMEN 164 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l----~~-~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ 164 (554)
+.....|-.|..|++.+++.-- .+.|..+++.+ .. ++-.=+..+...++.++.+++....||.|-++|+
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~------~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~p 900 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSAT------RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVP 900 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhh
Confidence 5577889999999988887543 33445444432 21 2233357788888999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Q 041545 165 VRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLG 208 (554)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~ 208 (554)
++....+ ..+.+..++-.++..++-.+|
T Consensus 901 llr~msd----------------~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 901 LLRRMSD----------------QIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred hhccccc----------------chHHHHHHHHHHHHHHhcccc
Confidence 9985543 233466677777777776554
No 122
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.79 E-value=89 Score=36.97 Aligned_cols=91 Identities=13% Similarity=0.198 Sum_probs=68.1
Q ss_pred HHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhchhhhch
Q 041545 80 VVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSIS-SRNLALASSCLRTTGALVNVLGLKALAE 157 (554)
Q Consensus 80 L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vLg~~~iP~ 157 (554)
+..++.++. +.+...|..++..++.++.+..-. ...|-+++..++.... ++...+|-+|+..+..+-++.|..++|+
T Consensus 849 i~tfl~gvr-epd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpi 927 (982)
T KOG4653|consen 849 INTFLSGVR-EPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPI 927 (982)
T ss_pred HHHHHHhcC-CchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHH
Confidence 334445544 447789999999999999866532 2267788887776654 4678899999999999999999999999
Q ss_pred hhHHHHHHHHhhhh
Q 041545 158 LPLIMENVRKKSRE 171 (554)
Q Consensus 158 LP~imP~ll~~l~~ 171 (554)
+....--+.+.+.+
T Consensus 928 lr~~l~Dl~~tl~~ 941 (982)
T KOG4653|consen 928 LRLLLIDLDETLLS 941 (982)
T ss_pred HHHHHHHHHHHHHH
Confidence 98775544444443
No 123
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.31 E-value=22 Score=41.37 Aligned_cols=90 Identities=10% Similarity=0.151 Sum_probs=70.4
Q ss_pred HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545 75 KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
.+.|++..+++ ..+..+|+.|+.|.-.+.++.+. .....++...+.+.+.+..|...++..+.+||.. ++..
T Consensus 142 dlapeVe~Ll~----~~~~~irKKA~Lca~r~irK~P~---l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~ 213 (866)
T KOG1062|consen 142 DLAPEVERLLQ----HRDPYIRKKAALCAVRFIRKVPD---LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI-SPDA 213 (866)
T ss_pred HhhHHHHHHHh----CCCHHHHHHHHHHHHHHHHcCch---HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc-CHHH
Confidence 46666666776 35677999999999999988863 2333344455667777888999999999999975 6688
Q ss_pred hchhhHHHHHHHHhhhhh
Q 041545 155 LAELPLIMENVRKKSREI 172 (554)
Q Consensus 155 iP~LP~imP~ll~~l~~~ 172 (554)
+-|+.+++|.++.+|++.
T Consensus 214 l~~fr~l~~~lV~iLk~l 231 (866)
T KOG1062|consen 214 LSYFRDLVPSLVKILKQL 231 (866)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999984
No 124
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.22 E-value=39 Score=36.36 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=88.7
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh-hchhhHHHHHHHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA-LAELPLIMENVRK 167 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~-iP~LP~imP~ll~ 167 (554)
.-++..|+.|+..+.-+-..++.+ ......+++.+.+.+.+++..+|-.++..+-.+.-..++.. -|+.+-+||.+..
T Consensus 69 HhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~ 148 (393)
T KOG2149|consen 69 HHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISS 148 (393)
T ss_pred CchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHH
Confidence 336679999999999888886654 23466677777788888899999999999998777766665 8999999998877
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
....+. ..++.-.+..+..+++..|.-++-|...++..+
T Consensus 149 AMThit----------------~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~ 187 (393)
T KOG2149|consen 149 AMTHIT----------------PEIQEDSLKFLSLLLERYPDTFSRYASKILENF 187 (393)
T ss_pred HHhhcc----------------HHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 665521 235666677778888888777777777766654
No 125
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=66.77 E-value=2.5e+02 Score=32.93 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=56.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHH--HHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRK--MCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~--l~~~L~~il~~~~~~~ 91 (554)
.|..+|+.+...+++.||++|.+ ..|+..-.+.... ++|.|..++.. +
T Consensus 335 kL~kLl~s~~~~l~~~aLrlL~N--------------------------LSfd~~~R~~mV~~GlIPkLv~LL~d---~- 384 (708)
T PF05804_consen 335 KLLKLLPSENEDLVNVALRLLFN--------------------------LSFDPELRSQMVSLGLIPKLVELLKD---P- 384 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH--------------------------hCcCHHHHHHHHHCCCcHHHHHHhCC---C-
Confidence 36779999999999999999982 2355555666665 99999999983 2
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhc
Q 041545 92 NISLKLTAVSTLEVLANRFASYDS--VFNLCLASVTNSIS 129 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~--~~~~~L~~v~~~l~ 129 (554)
+.++.++..|-.++..=.. .. ...+|++.+++.+.
T Consensus 385 --~~~~val~iLy~LS~dd~~-r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 385 --NFREVALKILYNLSMDDEA-RSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred --chHHHHHHHHHHhccCHhh-HHHHhhcchHHHHHHHHH
Confidence 3666666666666652111 12 34467887777653
No 126
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.89 E-value=44 Score=34.91 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=84.0
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHH
Q 041545 89 GESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRK 167 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~ 167 (554)
++++|+.+--++..+..+++-.... ++-+-++.-.+++.+.+....|--.|..|++.|...++.++...+-..+-.++.
T Consensus 98 ~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ 177 (334)
T KOG2933|consen 98 SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLH 177 (334)
T ss_pred chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5779999999999999998876533 555666666777888888888889999999999999999999987777777766
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHh-cccccccHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL-GGFLNPYLGDITE 220 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l-~~FlsPYL~~il~ 220 (554)
...+ .+..+...+.-+|.+++.+. |.-+.|.|..++.
T Consensus 178 ka~~----------------dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~ 215 (334)
T KOG2933|consen 178 KASQ----------------DNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQ 215 (334)
T ss_pred hhcc----------------cchHHHHHHHHHHHHHHhccChHHHHHHHHHHHh
Confidence 3322 13456666667777777754 3334444444443
No 127
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=64.33 E-value=28 Score=31.32 Aligned_cols=71 Identities=8% Similarity=0.141 Sum_probs=49.9
Q ss_pred HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 041545 75 KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVN 148 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~ 148 (554)
+++..|..++. ++.+...-..|..=|+-+++.++.....+. .+=..+.+.++++|+.|+--|++|+..+..
T Consensus 43 ~llk~L~~lL~---~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLD---KSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---cCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 36777778886 455777888899999999999975322222 122345678888999999999999988753
No 128
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.84 E-value=67 Score=35.94 Aligned_cols=128 Identities=13% Similarity=0.031 Sum_probs=89.1
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCcc
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGESN 92 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~~ 92 (554)
+..||..+...||++|.--|-+=..+... -..+.. ..++.|..++.. ...
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~-------------------------~Rd~vl~~g~l~pLl~~l~~---~~~ 208 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPD-------------------------CRDYVLSCGALDPLLRLLNK---SDK 208 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChH-------------------------HHHHHHhhcchHHHHHHhcc---ccc
Confidence 56799999999999999999844433221 022222 367777777773 323
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh-hchhhHHHHHHHHh
Q 041545 93 ISLKLTAVSTLEVLANRFASYDS---VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA-LAELPLIMENVRKK 168 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~---~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~-iP~LP~imP~ll~~ 168 (554)
..+...++-+|.-+|+.--+ .| ...++++.+..++.+.|..+..-+.-+++.++..--+.+ +-.--.++|.+++.
T Consensus 209 ~~~lRn~tW~LsNlcrgk~P-~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~l 287 (514)
T KOG0166|consen 209 LSMLRNATWTLSNLCRGKNP-SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDL 287 (514)
T ss_pred hHHHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHH
Confidence 45666777999999986532 23 366888888999999999999888888888887655554 22334566777776
Q ss_pred hhh
Q 041545 169 SRE 171 (554)
Q Consensus 169 l~~ 171 (554)
|..
T Consensus 288 L~~ 290 (514)
T KOG0166|consen 288 LGH 290 (514)
T ss_pred HcC
Confidence 665
No 129
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=63.30 E-value=69 Score=36.38 Aligned_cols=56 Identities=9% Similarity=0.120 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh----------hhchhhHHHHHHHHhhh
Q 041545 115 SVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK----------ALAELPLIMENVRKKSR 170 (554)
Q Consensus 115 ~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~----------~iP~LP~imP~ll~~l~ 170 (554)
..+..+...+.......++.++.++++++|+|++..-.. .-....++++.+...++
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 496 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELK 496 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHH
Confidence 344444444432222234555666666666665544333 44444555555555444
No 130
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=62.97 E-value=2e+02 Score=30.11 Aligned_cols=143 Identities=15% Similarity=0.262 Sum_probs=81.4
Q ss_pred HHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHH-HhhhhhhcccCh----hhHHHHHH
Q 041545 276 VRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLL-ALDLRRQHRVSI----QDIDIVEK 350 (554)
Q Consensus 276 ~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~-aLd~R~~~~~~~----~~i~~vE~ 350 (554)
+.-++.++..-|.... ...-....+++++..|++.+. .+....+.+++-+++ .++.=.+.-.+. ...-..=.
T Consensus 69 i~~l~~~vL~DY~~~~--p~~r~~evL~l~~~ii~kl~~-~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~ 145 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNSV--PDAREPEVLSLMATIINKLGE-LIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLR 145 (319)
T ss_dssp HHHHHHHHHHHHHHS---GGGS-HHHHHHHHHHHHHHGG-GCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--ccccChhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHH
Confidence 4445555666776522 223345788999999999888 556777777766664 344422111111 12222333
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHHH------HHHHHHHHHH----hcchhhccchh
Q 041545 351 SVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIV------FYSLVNKLAE----SHRSLFVPYFK 420 (554)
Q Consensus 351 ~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~it------fy~l~~~l~e----~LKslftpy~~ 420 (554)
.++......++.|.+..|+.++.-+ -||... ..|.++ ...+++.+.. ..+.-+--|+-
T Consensus 146 ~i~~~~f~~l~~lp~~~f~~~idsi-~wg~kh-----------~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~ 213 (319)
T PF08767_consen 146 AINEHCFPALLQLPPEQFKLVIDSI-VWGFKH-----------TNREISETGLNILLELLNNVSKTNPEFANQFYQQYYL 213 (319)
T ss_dssp HHHHHHTHHHHHS-HHHHHHHHHHH-HHHHTS-----------SSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcCCHHHHHHHHHHH-HHHhCC-----------CcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555556778889999999888555 699853 334333 2233333332 22234445666
Q ss_pred hHHHHHHHHhhhh
Q 041545 421 YLLEGCVQHLTDA 433 (554)
Q Consensus 421 ~ll~~~~~~L~~~ 433 (554)
.++..+..+++|.
T Consensus 214 ~il~~if~vltD~ 226 (319)
T PF08767_consen 214 DILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHCc
Confidence 6777777788774
No 131
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=62.22 E-value=2.7e+02 Score=31.42 Aligned_cols=207 Identities=14% Similarity=0.128 Sum_probs=109.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHH
Q 041545 121 LASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITL 200 (554)
Q Consensus 121 L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL 200 (554)
+..+++.+...+...+.-||-+|.. .+++=+.||.|+-.+-+.... ...-.+..++..++-.+
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T-----DsGL~~LlPyFv~fIae~vs~------------ni~~~nL~lL~~lm~m~ 271 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET-----DSGLQQLLPYFVTFIAEGVSV------------NIVQNNLELLIYLMRMV 271 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc-----CccHHHHHHHHHHHHhhheee------------ccccccHHHHHHHHHHH
Confidence 3445555445778888888877654 222233334443332221111 01113456777777777
Q ss_pred HHHHHHhcccccccHHHHHHHHhhc---cCCCCC--CC--hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 041545 201 EAVIDKLGGFLNPYLGDITELLVLC---PEYLPG--SD--PKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFIL 273 (554)
Q Consensus 201 ~~lv~~l~~FlsPYL~~il~~l~l~---~~~~~~--~~--~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~ 273 (554)
-.+.++---|+.|||..++--+.-| ...... .| -.+..-++.+...+.++.+ ..++++
T Consensus 272 rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~-------------~~y~~L-- 336 (576)
T KOG2549|consen 272 RSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFS-------------TLYNNL-- 336 (576)
T ss_pred HHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhh-------------hHHHHH--
Confidence 8888887788999999999665211 222111 11 1222223333333333333 333343
Q ss_pred HHHHhHhhHHHHHhhhhhhcCcchHH---HHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcc-cChhhHHHHH
Q 041545 274 HLVRLALPPLLKIYSGAVDAGDSSLV---IAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHR-VSIQDIDIVE 349 (554)
Q Consensus 274 ~~~r~Llpal~~~~~~~~~~~~~~l~---~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~-~~~~~i~~vE 349 (554)
-+-+...+.++|. +.....+ ..+..|+..-...=+..+..+.......+..-++.+.... .+..+...++
T Consensus 337 --~~Rit~tl~k~l~----D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~ 410 (576)
T KOG2549|consen 337 --QPRITRTLSKALL----DNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVY 410 (576)
T ss_pred --HHHHHHHHHHHhc----CCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHH
Confidence 4445556666663 2222222 2222233222222233566677777777777777765432 3466777788
Q ss_pred HHHHHHHHH-HHHhhcc
Q 041545 350 KSVISTVIS-LTMKLTE 365 (554)
Q Consensus 350 ~~vi~a~~~-lVlKLsE 365 (554)
..+.+|... ..+||+-
T Consensus 411 ~~llk~~~~ii~~~l~~ 427 (576)
T KOG2549|consen 411 GALLKAENPIIRDKLNS 427 (576)
T ss_pred HHHHHHhhHHHHhhhcc
Confidence 888888887 6667765
No 132
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=61.40 E-value=1.1e+02 Score=28.65 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcC----CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHh
Q 041545 95 LKLTAVSTLEVLANRFASY--DSVFNLCLASVTNSISS----RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKK 168 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~----~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~ 168 (554)
+-..+..|+-.+.-+.... +|.|..++.=+...+.. ....=+.+-+-++..+.+.|+.-+.||...+++.+.+.
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~ 116 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDL 116 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888643 44455444444443322 23334467788999999999999999999999999999
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 041545 169 SREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK 206 (554)
Q Consensus 169 l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~ 206 (554)
|++.... .. ++......+...++.+|+..+.+
T Consensus 117 L~~~~~~--~~----~~~~~~~~L~~~vL~~L~~~F~~ 148 (153)
T PF08146_consen 117 LKQFNSS--KT----ESKSKSWELWRLVLSTLQKCFLH 148 (153)
T ss_pred HHHhhhc--cc----cchhhHHHHHHHHHHHHHHHHhh
Confidence 9874310 00 01012346777888888777654
No 133
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=59.82 E-value=68 Score=30.81 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=77.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
+.+++...++..||..|++++..-++| +-.-+++ .+|.|.++.. +.+.
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~q-GLvnP~~---------------------------cvp~lIAL~t----s~~~ 59 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQ-GLVNPKQ---------------------------CVPTLIALET----SPNP 59 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhc-CCCChHH---------------------------HHhHhhhhhC----CCCh
Confidence 456788899999999999999988876 3222233 6788887665 4577
Q ss_pred hHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHH---HhcCCCh-hHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHh
Q 041545 94 SLKLTAVSTLEVLANRFASY-DSVFNLCLASVTN---SISSRNL-ALASSCLRTTGALVNVLGLKALAELPLIMENVRKK 168 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~---~l~~~~~-~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~ 168 (554)
.+|..|...+..+.+++++= +..+.+-+..+.+ .+..+.. .........++.+=+.++ .--++=.+++..+++.
T Consensus 60 ~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~ 138 (187)
T PF12830_consen 60 SIRSRAYQLLKELHEKHESLVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQ 138 (187)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHH
Confidence 89999999999999999852 1122222333322 1222211 111113344444444454 2236667777777776
Q ss_pred hhh
Q 041545 169 SRE 171 (554)
Q Consensus 169 l~~ 171 (554)
+..
T Consensus 139 f~~ 141 (187)
T PF12830_consen 139 FDF 141 (187)
T ss_pred HHh
Confidence 665
No 134
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=59.31 E-value=44 Score=36.40 Aligned_cols=84 Identities=13% Similarity=0.064 Sum_probs=48.2
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
|..+|+.+++.||+=+++.+-.+-.+ -.+.|..+++ +++..
T Consensus 122 L~~~L~~~~p~vR~aal~al~~r~~~-----------------------------------~~~~L~~~L~----d~d~~ 162 (410)
T TIGR02270 122 LEPLLAASEPPGRAIGLAALGAHRHD-----------------------------------PGPALEAALT----HEDAL 162 (410)
T ss_pred HHHHhcCCChHHHHHHHHHHHhhccC-----------------------------------hHHHHHHHhc----CCCHH
Confidence 55677777777777777666632211 1234555554 34566
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGAL 146 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l 146 (554)
+|..|+.+++.+...- .++.+...+.+.++.||..++-+++.+
T Consensus 163 Vra~A~raLG~l~~~~---------a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 163 VRAAALRALGELPRRL---------SESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHHHHhhcccc---------chHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 7777777776654321 122233446667777777777766444
No 135
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=58.53 E-value=66 Score=37.40 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-Cch-HHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHh
Q 041545 74 RKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSV-FNLCLASVTNSISS-RNLALASSCLRTTGALVNVL 150 (554)
Q Consensus 74 ~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~-~~~~L~~v~~~l~~-~~~~l~~sallcl~~l~~vL 150 (554)
..++..|...+... .-|-.|+.-|..+.+.-++- +.. -.+++..+..|+.. .+..+..+|++|+..|.-.+
T Consensus 69 K~~~~~l~~~~~~~------~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 69 KHLFDKLNDYFVKP------SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred HHHHHHHHHHHcCc------hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 34777888888742 25555555555555544432 111 12456667777764 46778889999999988777
Q ss_pred chhhhchhhHHHHHHHH
Q 041545 151 GLKALAELPLIMENVRK 167 (554)
Q Consensus 151 g~~~iP~LP~imP~ll~ 167 (554)
-....||||.++.-...
T Consensus 143 p~~l~~~L~~Lf~If~R 159 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGR 159 (668)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 77777777777765554
No 136
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=58.06 E-value=51 Score=27.72 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=50.8
Q ss_pred ccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 041545 64 HLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSIS 129 (554)
Q Consensus 64 ~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~ 129 (554)
.++++....+..++..|...+.. +.+...-...-++.+...+.+|-.+||.+..++..+...++
T Consensus 18 ~ld~~~~~~L~~l~~dIe~~L~~--~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i~~sLa 81 (85)
T PF14357_consen 18 PLDEETRAELSSLDDDIEAQLAE--EDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNIMDSLA 81 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc--CCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 47888899999999999999996 22233345566688888999999999999998888877664
No 137
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=57.03 E-value=65 Score=26.96 Aligned_cols=70 Identities=6% Similarity=0.148 Sum_probs=50.7
Q ss_pred HHH-HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 041545 72 SFR-KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTG 144 (554)
Q Consensus 72 ~f~-~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~ 144 (554)
.|. .++.++..++. ...+.++|.-.+.|+..+....|.. .+--..++..+......++..+...|+-|+-
T Consensus 13 ~fQ~~fL~Pf~~i~~---~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 13 NFQKDFLKPFEYIMS---NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 344 46777777776 3457789999999999999999975 3445556666555555667888888877753
No 138
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.64 E-value=71 Score=37.03 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=64.7
Q ss_pred hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHH
Q 041545 19 LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLT 98 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~ 98 (554)
+..++..||-+++.+|+.=+.. ..+.+...|..+...|..=+. +. +.++|--
T Consensus 94 ~Eskdk~VRfrvlqila~l~d~------------------------~~eidd~vfn~l~e~l~~Rl~---Dr-ep~VRiq 145 (892)
T KOG2025|consen 94 TESKDKKVRFRVLQILALLSDE------------------------NAEIDDDVFNKLNEKLLIRLK---DR-EPNVRIQ 145 (892)
T ss_pred ccCcchhHHHHHHHHHHHHhcc------------------------ccccCHHHHHHHHHHHHHHHh---cc-CchHHHH
Confidence 4456799999999999944332 345667889998888877666 22 4568888
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCChhHHHHHHHHHHHH
Q 041545 99 AVSTLEVLANRFASYDSVFNLCLASVTNSIS-SRNLALASSCLRTTGAL 146 (554)
Q Consensus 99 Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~-~~~~~l~~sallcl~~l 146 (554)
|+.||..+-..=+ ++.+. +.......++ ++++.||.++++|++.=
T Consensus 146 Av~aLsrlQ~d~~--dee~~-v~n~l~~liqnDpS~EVRRaaLsnI~vd 191 (892)
T KOG2025|consen 146 AVLALSRLQGDPK--DEECP-VVNLLKDLIQNDPSDEVRRAALSNISVD 191 (892)
T ss_pred HHHHHHHHhcCCC--CCccc-HHHHHHHHHhcCCcHHHHHHHHHhhccC
Confidence 8888876654211 33332 2333333343 47899999999998753
No 139
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=56.64 E-value=52 Score=28.05 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=52.5
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh
Q 041545 90 ESNISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL 158 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L 158 (554)
+....+|.-++..|..+.+.-- ... ....++....+.+.++|+=|--+|+-++++|+.....+.+|.|
T Consensus 14 dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 14 DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 3456799999888888887654 112 3566777778889989999999999999999999877665543
No 140
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=56.45 E-value=90 Score=36.11 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh
Q 041545 74 RKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK 153 (554)
Q Consensus 74 ~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~ 153 (554)
.++.|.|..+.+. .......-+-+.=+++|.++..++ .....||+.+..++.+.+..+.+.++--+..+.+.+-..
T Consensus 348 ~~~~p~l~pi~~~---~~~~~~~l~i~e~mdlL~~Kt~~e-~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 348 PKMLPALKPIYSA---SDPKQALLFILENMDLLKEKTPPE-EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhhHHHHHHhcc---CCcccchhhHHhhHHHHHhhCChH-HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 3577888888874 223335556677788889998763 246689999999999999999999999999998888754
Q ss_pred hh--chhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHH
Q 041545 154 AL--AELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-LNPYLGDITELL 222 (554)
Q Consensus 154 ~i--P~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-lsPYL~~il~~l 222 (554)
++ +.||++.--+++ .++-.+...++.|++.+++.+-.+ +.+-+..++.++
T Consensus 424 ~vk~~ilP~l~~l~~~-------------------tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFK-------------------TTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI 476 (700)
T ss_pred HHHHHHHHHhhcchhc-------------------ccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 43 233333322111 123457788999999999988876 336666666554
No 141
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.31 E-value=4.2e+02 Score=31.69 Aligned_cols=157 Identities=12% Similarity=0.155 Sum_probs=101.5
Q ss_pred HhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHH
Q 041545 17 ASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLK 96 (554)
Q Consensus 17 ~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lr 96 (554)
..++.+.+.+|--+|..|..=+.++. .+....-.+++.-....++ ++|.=+=
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~------------------------~~~~~~~ekvl~i~ld~Lk----dedsyvy 785 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRK------------------------KATLIQGEKVLAIALDTLK----DEDSYVY 785 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcc------------------------hhhhhhHHHHHHHHHHHhc----ccCceee
Confidence 36777778888888888775544332 1123333345555555555 2333344
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHH---HhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhh
Q 041545 97 LTAVSTLEVLANRFASYDSVFNLCLASVTN---SISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIS 173 (554)
Q Consensus 97 q~Al~~L~~lA~~~g~~~~~~~~~L~~v~~---~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~ 173 (554)
-.|+.++..+++.|+++ .|..+.+.=.+ ..+ .+.+++.. =+++.+++.+|+-+..|+..++-.++....+
T Consensus 786 LnaI~gv~~Lcevy~e~--il~dL~e~Y~s~k~k~~-~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvre-- 858 (982)
T KOG4653|consen 786 LNAIRGVVSLCEVYPED--ILPDLSEEYLSEKKKLQ-TDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVRE-- 858 (982)
T ss_pred HHHHHHHHHHHHhcchh--hHHHHHHHHHhcccCCC-ccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCC--
Confidence 45666677899998753 33333221111 111 24444443 6678888899999999998888888874442
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 174 TYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 174 ~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
.+...-+|.++.++.+..-+..-++.++.+++..+
T Consensus 859 --------------pd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~I 893 (982)
T KOG4653|consen 859 --------------PDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLI 893 (982)
T ss_pred --------------chHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 23457899999999999999988888888888876
No 142
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.60 E-value=86 Score=39.35 Aligned_cols=93 Identities=10% Similarity=-0.030 Sum_probs=61.0
Q ss_pred HHHHHHHhhccC-CCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545 76 MCSEVVLLVDNS-TGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 76 l~~~L~~il~~~-~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
+.|-..+.++.. +...+..+-.....|+...+..-+. .|.++...+.....++..+.|=.++..+..+...+|..-
T Consensus 1500 ~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~~~---d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~ 1576 (1621)
T KOG1837|consen 1500 SYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVADKD---DLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENV 1576 (1621)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccCChh---hhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchh
Confidence 555555555511 1122222333333444433333322 277666666666666778899999999999999999999
Q ss_pred hchhhHHHHHHHHhhhh
Q 041545 155 LAELPLIMENVRKKSRE 171 (554)
Q Consensus 155 iP~LP~imP~ll~~l~~ 171 (554)
++.||..+|.+-+.+++
T Consensus 1577 ~~lL~q~iPfLaEL~ED 1593 (1621)
T KOG1837|consen 1577 IVLLPQSIPFLAELMED 1593 (1621)
T ss_pred HHhhhhhhHHHHHHHhh
Confidence 99999999999886654
No 143
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=53.20 E-value=4.4e+02 Score=31.13 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=93.0
Q ss_pred hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHH
Q 041545 19 LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLT 98 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~ 98 (554)
|....++.|+.||.-+=..+.... .+-.++|.+...+. ..+.++|.-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~-----------------------------dmssLf~dViK~~~----trd~ElKrL 74 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE-----------------------------DMSSLFPDVIKNVA----TRDVELKRL 74 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC-----------------------------ChHHHHHHHHHHHH----hcCHHHHHH
Confidence 444457889999988877776644 24556777777776 336677776
Q ss_pred HHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhh-hhh
Q 041545 99 AVSTLEVLANRFASYDS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIS-TYV 176 (554)
Q Consensus 99 Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~-~~~ 176 (554)
-..=+... |+-+| ...-+.+.+.+-++++|+.+|++|+-+++.|= .--.++.++|++.+.+++.. |-.
T Consensus 75 ~ylYl~~y----ak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVR 144 (757)
T COG5096 75 LYLYLERY----AKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVR 144 (757)
T ss_pred HHHHHHHH----hccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHH
Confidence 66655544 44445 34456667777788888889988888877542 12234555566655555522 000
Q ss_pred hh----------hc----cccc--------chhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 177 DV----------QN----ESNE--------DKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 177 ~~----------~~----~~~~--------~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
.. .+ .+.+ ..|++..+..+|+.++..+-.. -..||...+...+
T Consensus 145 k~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i 209 (757)
T COG5096 145 KTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRI 209 (757)
T ss_pred HHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHh
Confidence 00 00 0000 1234555666777777666665 3347777776665
No 144
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.08 E-value=39 Score=33.58 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHH
Q 041545 117 FNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASV 196 (554)
Q Consensus 117 ~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~ 196 (554)
+-..|+.-.+++..-+-+-+-.|--.+..|.-..|.+++|.||++++++=+.|... +.++.-.+
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr----------------d~ev~~~~ 175 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR----------------DDEVICRT 175 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc----------------cHHHHHHH
Confidence 55667777788776555666667777788888999999999999999988877651 23444444
Q ss_pred HHHHHHH---HHHhcccccccHHHHHHHH
Q 041545 197 LITLEAV---IDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 197 lsaL~~l---v~~l~~FlsPYL~~il~~l 222 (554)
+-.|+.+ ..-.|.-+.||-.+++-.+
T Consensus 176 Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 176 LKVLQQLVVSVGCVGAALVPFYRQLLPVL 204 (262)
T ss_pred HHHHHHHHHhccccchhhhhHHHHhhhhh
Confidence 4444444 4456677889988888775
No 145
>PF05536 Neurochondrin: Neurochondrin
Probab=53.03 E-value=2e+02 Score=32.57 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHH--HHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNL--CLASVTNSISSRNLALASSCLRTTGALV 147 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~--~L~~v~~~l~~~~~~l~~sallcl~~l~ 147 (554)
.+.+...+|.|..++.. .++.+...-|+.||-.++ ..+.....|.. .++.+.+.+.+ .....+.++-.|..++
T Consensus 93 ~~~~~~~IP~Lle~l~~---~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Ll 167 (543)
T PF05536_consen 93 SPQMVSRIPLLLEILSS---SSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLL 167 (543)
T ss_pred CHHHHHHHHHHHHHHHc---CCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHH
Confidence 47788899999999984 334667788888888888 44332223433 45555565544 5667888999999999
Q ss_pred HHhchhhhchhhHHHHHHHHhhhh
Q 041545 148 NVLGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 148 ~vLg~~~iP~LP~imP~ll~~l~~ 171 (554)
...+.+..+--++.+-.++..+..
T Consensus 168 s~~~~~~~~~~~~~l~~il~~La~ 191 (543)
T PF05536_consen 168 SRLGQKSWAEDSQLLHSILPSLAR 191 (543)
T ss_pred HhcchhhhhhhHHHHHHHHHHHHH
Confidence 999988877666666666655443
No 146
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=52.71 E-value=2.2e+02 Score=30.42 Aligned_cols=127 Identities=14% Similarity=0.133 Sum_probs=76.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
-++..+-+....+|.||+.++.+-...-+..+.-. |...+.-+.. .+.. .+-..+++.|..++... ++..
T Consensus 179 ~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s---~~~~~~~~~~----~~~~-~~~~~~~~~L~~mi~~~--~~~~ 248 (372)
T PF12231_consen 179 ILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELS---KSVLEDLQRS----LENG-KLIQLYCERLKEMIKSK--DEYK 248 (372)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHH---HHHHHHhccc----cccc-cHHHHHHHHHHHHHhCc--CCcc
Confidence 46677778899999999998876554433211111 1111111100 0111 33445777788888742 2121
Q ss_pred hHHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545 94 SLKLTAVSTLEVLANRFASY----DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~----~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
.|+..=..+..-+|.. .+.+.+.|.....|..++++.++..|+.||-.++......-
T Consensus 249 ----~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~ 309 (372)
T PF12231_consen 249 ----LAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNE 309 (372)
T ss_pred ----hHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 2223333333333432 34788999999999999999999999999999999665543
No 147
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.99 E-value=66 Score=38.38 Aligned_cols=138 Identities=12% Similarity=0.032 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhh-HHHHHHHHhhhhhhh
Q 041545 97 LTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELP-LIMENVRKKSREIST 174 (554)
Q Consensus 97 q~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP-~imP~ll~~l~~~~~ 174 (554)
-.++++++.+|...|.+ .+.+...+=.+.+.+.+++..+...|-.|+-.||+.|+-..+|++= .=+-.++..+...
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~-- 643 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALR-- 643 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHH--
Confidence 35789999999999987 5556655666677777788889999999999999999988777651 1222333322210
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHH
Q 041545 175 YVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL-VLCPEYLPGSDPKLKVKADAVRRLLT 248 (554)
Q Consensus 175 ~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l-~l~~~~~~~~~~~~~s~~~~l~~~la 248 (554)
+ .. ..+...+---+..+.+.-.+-..||+.++++.+ ..++.|+..+....-+..-++.+.++
T Consensus 644 L--~~----------~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~ 706 (1014)
T KOG4524|consen 644 L--NT----------SGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMK 706 (1014)
T ss_pred h--cc----------CCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence 0 00 000111222233444555566779999988887 33444432221222233344444444
No 148
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=51.48 E-value=54 Score=29.87 Aligned_cols=79 Identities=24% Similarity=0.267 Sum_probs=51.5
Q ss_pred HhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHH
Q 041545 17 ASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLK 96 (554)
Q Consensus 17 ~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lr 96 (554)
.=|+++.+.+.-.||.||..=+++-+. .| -.+.... .++..|..++..........+|
T Consensus 49 krl~~~~~~vq~~aL~lld~lvkNcg~-----------------~f--~~ev~~~---~fl~~l~~l~~~~~~~~~~~Vk 106 (140)
T PF00790_consen 49 KRLKHGNPNVQLLALTLLDALVKNCGP-----------------RF--HREVASK---EFLDELVKLIKSKKTDPETPVK 106 (140)
T ss_dssp HHHTTSSHHHHHHHHHHHHHHHHHSHH-----------------HH--HHHHTSH---HHHHHHHHHHHHTTTHHHSHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCH-----------------HH--HHHHhHH---HHHHHHHHHHccCCCCchhHHH
Confidence 357788899999999999876665431 01 0111111 3667788888753322222299
Q ss_pred HHHHHHHHHHHHHhCCCCchHH
Q 041545 97 LTAVSTLEVLANRFASYDSVFN 118 (554)
Q Consensus 97 q~Al~~L~~lA~~~g~~~~~~~ 118 (554)
+.++..+..-+..|+. +|.+.
T Consensus 107 ~k~l~ll~~W~~~f~~-~~~~~ 127 (140)
T PF00790_consen 107 EKILELLQEWAEAFKS-DPELS 127 (140)
T ss_dssp HHHHHHHHHHHHHTTT-STTGH
T ss_pred HHHHHHHHHHHHHHCC-CCCch
Confidence 9999999999999965 45443
No 149
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.92 E-value=26 Score=39.07 Aligned_cols=121 Identities=13% Similarity=0.148 Sum_probs=76.0
Q ss_pred hHHhhhcCCh-hHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 15 LYASLFNGEI-CTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 15 ~~~ll~~~~~-~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
|+.++.++++ +..|.+.=+|++=-+...+ ..- .......+|-|..++. +.|.
T Consensus 199 Ll~~l~~~~~~~~lRn~tW~LsNlcrgk~P---------------~P~--------~~~v~~iLp~L~~ll~----~~D~ 251 (514)
T KOG0166|consen 199 LLRLLNKSDKLSMLRNATWTLSNLCRGKNP---------------SPP--------FDVVAPILPALLRLLH----STDE 251 (514)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHcCCCC---------------CCc--------HHHHHHHHHHHHHHHh----cCCH
Confidence 5667777775 7888887777743333221 111 2233456666666666 3355
Q ss_pred hHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH--------hchhhhchhhHHH
Q 041545 94 SLKLTAVSTLEVLANRFASYDS--VFNLCLASVTNSISSRNLALASSCLRTTGALVNV--------LGLKALAELPLIM 162 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~--~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~v--------Lg~~~iP~LP~im 162 (554)
++..-|.-++.-|+..-...-. .-..+++.+++++...+..++..++.++|.++.+ +...++|+|+.++
T Consensus 252 ~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll 330 (514)
T KOG0166|consen 252 EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLL 330 (514)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHh
Confidence 6666666777666653322111 1235778889999999999999999999998764 4455566655544
No 150
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.37 E-value=1.1e+02 Score=33.50 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=40.2
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.+..+|++++++||+.|++.|. ++.... .++.|...+. +.+.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG-~l~~~~---------------------------------a~~~L~~al~----d~~~ 192 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALG-ELPRRL---------------------------------SESTLRLYLR----DSDP 192 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHH-hhcccc---------------------------------chHHHHHHHc----CCCH
Confidence 3566899999999999999997 233222 3455665544 5688
Q ss_pred hHHHHHHHHHHHH
Q 041545 94 SLKLTAVSTLEVL 106 (554)
Q Consensus 94 ~lrq~Al~~L~~l 106 (554)
.+|..|+.++..+
T Consensus 193 ~VR~aA~~al~~l 205 (410)
T TIGR02270 193 EVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHHHHHHc
Confidence 8999999888655
No 151
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=49.14 E-value=2.6e+02 Score=27.77 Aligned_cols=67 Identities=6% Similarity=-0.025 Sum_probs=47.5
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHhchhhhchh
Q 041545 89 GESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSI-SSRNLALASSCLRTTGALVNVLGLKALAEL 158 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l-~~~~~~l~~sallcl~~l~~vLg~~~iP~L 158 (554)
+++.++..-....++.-+++..+. .-.++++.+.+++ ...+...+..++-+++.+|+.--.++-+..
T Consensus 94 ~~~~~~~~i~~a~s~~~ic~~~p~---~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 94 KDEFWECLISIAASIRDICCSRPD---HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred CcchHHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 445555555556788888888875 5666778888888 677888888999999999944444444433
No 152
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=48.88 E-value=42 Score=31.53 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=68.8
Q ss_pred chhhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH------HHHHHHHHhh
Q 041545 11 APVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR------KMCSEVVLLV 84 (554)
Q Consensus 11 ~~~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~------~l~~~L~~il 84 (554)
.|-.+...|++..... +.|.-|...|+..+ .+| ...|. .++..|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~-----------------~~W-------v~~Fl~~~G~~~L~~~L~~~~ 120 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNP-----------------ISW-------VQEFLELGGLEALLNVLSKLN 120 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS------------------HHH-------HHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCC-----------------chH-------HHHhccCCCHHHHHHHHHHhh
Confidence 3555666776665444 88888888887654 345 44443 3555555555
Q ss_pred ccCC-CCccHhHHHHHHHHHHHHHH-HhCCC----CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 041545 85 DNST-GESNISLKLTAVSTLEVLAN-RFASY----DSVFNLCLASVTNSISSRNLALASSCLRTTGALV 147 (554)
Q Consensus 85 ~~~~-~~~~~~lrq~Al~~L~~lA~-~~g~~----~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~ 147 (554)
.... .+.+......++.|++.|.+ ..|-+ +|. ++..+..++.+.+..++..++-.|+.+|
T Consensus 121 ~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~---~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 121 KKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPD---SVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp THHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSS---HHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcH---HHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4332 24667788999999999877 45532 333 4556677777888999999998888887
No 153
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=48.69 E-value=2e+02 Score=25.86 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=52.7
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHH-HHHHHHHHHhhccCCCCccHh
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESF-RKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~l~~~L~~il~~~~~~~~~~ 94 (554)
-.-|+++.+.++..||.+|..=+++-+. .| ..+.- .+.+..|..++... ...+..
T Consensus 43 ~krl~~~n~~vql~AL~lLd~~vkNcg~-----------------~f------~~~i~s~~fl~~l~~l~~~~-~~~~~~ 98 (133)
T cd03561 43 RKKIKYGNPHVQLLALTLLELLVKNCGK-----------------PF------HLQVADKEFLLELVKIAKNS-PKYDPK 98 (133)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhCCh-----------------HH------HHHHhhHHHHHHHHHHhCCC-CCCCHH
Confidence 3467888999999999999876666442 11 01111 13555688888753 256778
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 041545 95 LKLTAVSTLEVLANRFASY 113 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~ 113 (554)
+|+.++..+..-+..|+.+
T Consensus 99 Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 99 VREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999975
No 154
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=48.47 E-value=1.2e+02 Score=31.72 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc-h
Q 041545 74 RKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLG-L 152 (554)
Q Consensus 74 ~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg-~ 152 (554)
.+++..|..++.. +.+-.-...++.++..=..+++.+ .=..++...++++++...++|..=+.|+|.+....+ .
T Consensus 21 ~~i~~~l~~~~~K---E~nE~aL~~~l~al~~~~~~~~~~--~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 21 SKIVQGLSPLLSK---ESNEAALSALLSALFKHLFFLSSE--LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred HHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHhCcC--CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 3567777777773 333345556667777766677432 334567788889998888899999999999886222 3
Q ss_pred hhhchhhHHHHHHHHhhhhh
Q 041545 153 KALAELPLIMENVRKKSREI 172 (554)
Q Consensus 153 ~~iP~LP~imP~ll~~l~~~ 172 (554)
..+++...++|.+++.+++.
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~ 115 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEA 115 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45788888899999888774
No 155
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=48.15 E-value=26 Score=33.77 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhCCC--CchHHHHHHHH------------HHHhcCCChhHHHHHHHHHHHHHHHhc
Q 041545 95 LKLTAVSTLEVLANRFASY--DSVFNLCLASV------------TNSISSRNLALASSCLRTTGALVNVLG 151 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~--~~~~~~~L~~v------------~~~l~~~~~~l~~sallcl~~l~~vLg 151 (554)
+|+.|+.||..+++..++. ..+....+|.. +-.+.+++..+|..++..++.|-++.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk 72 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK 72 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH
Confidence 7999999999999996654 33444555544 123456789999999999999988754
No 156
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=48.05 E-value=58 Score=27.67 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=41.1
Q ss_pred CCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 041545 130 SRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAV 203 (554)
Q Consensus 130 ~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~l 203 (554)
.++|.+|..|--.++.+|+.+|..--..-|+++-.+.+.+.+. ..+-..+.+++..|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~--------------~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDP--------------KKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHHH
Confidence 3679999999999999999988775555555655555555431 12334566777766555
No 157
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.99 E-value=2.9e+02 Score=31.11 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhc----hhhHHHHHHHHhhhh
Q 041545 114 DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALA----ELPLIMENVRKKSRE 171 (554)
Q Consensus 114 ~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP----~LP~imP~ll~~l~~ 171 (554)
...+..+...+...-...+..++.++++++|++++......-. ....++|.+...+++
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~ 453 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQ 453 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 4566666666664333456778888888888888743333211 234455555554443
No 158
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=47.12 E-value=1.3e+02 Score=35.39 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=62.8
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKAL 155 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~i 155 (554)
++--++.|.+. -++.+..+|+.|+-++..+- +......+++.+.+++.++++.||..|++|++.+=+. +.+..
T Consensus 90 ~lLavNti~kD-l~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~ 162 (757)
T COG5096 90 ALLAVNTIQKD-LQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLY 162 (757)
T ss_pred HHHHHHHHHhh-ccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhh
Confidence 34444455543 24667789999999998762 2235667788888999999999999999999998742 33333
Q ss_pred chh--------------hHHHHHHHHhhhhh
Q 041545 156 AEL--------------PLIMENVRKKSREI 172 (554)
Q Consensus 156 P~L--------------P~imP~ll~~l~~~ 172 (554)
+-+ |.+++..+..+..+
T Consensus 163 ~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 163 HELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred hcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 333 67777777776653
No 159
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.05 E-value=3.5e+02 Score=32.28 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=94.0
Q ss_pred hhcC-ChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHH--HHHHHHHHHhhccCCCCccHhH
Q 041545 19 LFNG-EICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESF--RKMCSEVVLLVDNSTGESNISL 95 (554)
Q Consensus 19 l~~~-~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~l~~~L~~il~~~~~~~~~~l 95 (554)
|++. |++.+-+||.=||+-|---+. .+..-| ..++|.|..+++. +.+.++
T Consensus 176 L~~~~Des~Qleal~Elce~L~mgnE------------------------esLs~fpv~slvp~Lv~LL~~---E~n~DI 228 (1051)
T KOG0168|consen 176 LQAESDESQQLEALTELCEMLSMGNE------------------------ESLSGFPVKSLVPVLVALLSH---EHNFDI 228 (1051)
T ss_pred ccccCChHHHHHHHHHHHHHHhhcch------------------------hhhccccHHHHHHHHHHHHhc---cccHHH
Confidence 4444 899999999999988765442 111222 3588999999994 446778
Q ss_pred HHHHHHHHHHHHHHhCCC-----C----chHH------HHHHHHHHH------hcCCC---------------------h
Q 041545 96 KLTAVSTLEVLANRFASY-----D----SVFN------LCLASVTNS------ISSRN---------------------L 133 (554)
Q Consensus 96 rq~Al~~L~~lA~~~g~~-----~----~~~~------~~L~~v~~~------l~~~~---------------------~ 133 (554)
---|.-||.-+++.++.. + |.|. ++|..+.++ |+..+ -
T Consensus 229 Ml~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi 308 (1051)
T KOG0168|consen 229 MLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSI 308 (1051)
T ss_pred HHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHH
Confidence 888889999999999864 1 2222 122222222 22111 1
Q ss_pred hHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 041545 134 ALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK 206 (554)
Q Consensus 134 ~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~ 206 (554)
.+.-.|+...+.+|..+.++..-|.-..+|-+...|... ++....+++.++..+++.
T Consensus 309 ~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~----------------D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 309 HAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQ----------------DKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhc----------------cchhHHHHHHHHHHHHHh
Confidence 122356777788999999998888888898888877651 233455666666666553
No 160
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.87 E-value=7e+02 Score=31.52 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh----hhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHH
Q 041545 119 LCLASVTNSISSRNLALASSCLRTTGALVNVLGLK----ALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMA 194 (554)
Q Consensus 119 ~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~----~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~ 194 (554)
.-+..+++.++-.|.....=|+.+++++++..... ++|++|.+.+.++- |.+..+-.
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~-------------------d~~~~VR~ 101 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLII-------------------DEDRTVRL 101 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhc-------------------CccHHHHH
Confidence 34555666666677778888888888888755444 47778888877664 11345677
Q ss_pred HHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 195 SVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 195 s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
..-..++.++..+..-++|||..++.-.
T Consensus 102 ~t~~v~s~l~t~lkk~lsp~LK~li~~w 129 (1312)
T KOG0803|consen 102 LTHDVFSKLLTKLKKKLSPFLKSLIPPW 129 (1312)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhhhh
Confidence 7888889999999999999999999875
No 161
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.81 E-value=1.2e+02 Score=27.95 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=50.9
Q ss_pred HhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHH
Q 041545 17 ASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLK 96 (554)
Q Consensus 17 ~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lr 96 (554)
.-|+++++.|...||.||..=+++-+. .| | .+.... +++..|..++.. ..+..+|
T Consensus 48 krl~~~n~~vql~AL~LLe~~vkNCG~-----------------~f-h-~evas~---~fl~~l~~l~~~---~~~~~Vk 102 (142)
T cd03569 48 KRLLSKNPNVQLYALLLLESCVKNCGT-----------------HF-H-DEVASR---EFMDELKDLIKT---TKNEEVR 102 (142)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHCCH-----------------HH-H-HHHhhH---HHHHHHHHHHcc---cCCHHHH
Confidence 467788899999999999866665331 11 1 111111 466777777773 5577899
Q ss_pred HHHHHHHHHHHHHhCCC
Q 041545 97 LTAVSTLEVLANRFASY 113 (554)
Q Consensus 97 q~Al~~L~~lA~~~g~~ 113 (554)
+.++..+..-+..|+.+
T Consensus 103 ~kil~li~~W~~~f~~~ 119 (142)
T cd03569 103 QKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999999864
No 162
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=46.81 E-value=35 Score=23.87 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 041545 120 CLASVTNSISSRNLALASSCLRTTGALVN 148 (554)
Q Consensus 120 ~L~~v~~~l~~~~~~l~~sallcl~~l~~ 148 (554)
.++..++.+.+.+..++..+.-+++.|++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57788888999999999999999999874
No 163
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=46.60 E-value=1.2e+02 Score=28.09 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=53.6
Q ss_pred HhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHH
Q 041545 17 ASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLK 96 (554)
Q Consensus 17 ~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lr 96 (554)
.-|++++++|.-.||.||..=+++-+. .| -.+.+.. .++..|..++... .+..+|
T Consensus 44 KRl~~~n~~v~l~AL~LLe~~vkNCG~-----------------~f--h~evask---~Fl~eL~kl~~~~---~~~~Vk 98 (144)
T cd03568 44 KRLNHKDPNVQLRALTLLDACAENCGK-----------------RF--HQEVASR---DFTQELKKLINDR---VHPTVK 98 (144)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHCCH-----------------HH--HHHHhhH---HHHHHHHHHhccc---CCHHHH
Confidence 367788999999999999877766542 11 1111111 4677888888852 677899
Q ss_pred HHHHHHHHHHHHHhCCCCch
Q 041545 97 LTAVSTLEVLANRFASYDSV 116 (554)
Q Consensus 97 q~Al~~L~~lA~~~g~~~~~ 116 (554)
+..+..+...+..|+. +|.
T Consensus 99 ~kil~li~~W~~~f~~-~~~ 117 (144)
T cd03568 99 EKLREVVKQWADEFKN-DPS 117 (144)
T ss_pred HHHHHHHHHHHHHhCC-Ccc
Confidence 9999999999999985 453
No 164
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=5.5e+02 Score=30.14 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 041545 100 VSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGA 145 (554)
Q Consensus 100 l~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~ 145 (554)
+..++.+++-+++++.....++..+...++..+.++..+++=.+-.
T Consensus 220 i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 220 IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence 4668888888988765677788888888888888777666554433
No 165
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=46.20 E-value=1.1e+02 Score=29.21 Aligned_cols=85 Identities=14% Similarity=0.252 Sum_probs=47.5
Q ss_pred cchHHHHH-HHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHH---HHHHHHHHHHHhhcccchhh
Q 041545 295 DSSLVIAF-EILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEK---SVISTVISLTMKLTETMFRP 370 (554)
Q Consensus 295 ~~~l~~ll-~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~---~vi~a~~~lVlKLsE~tFrP 370 (554)
..++..++ .+|... ....+..+..+.+.+.+-+-..|..+-.....-+++++.++ +++.+...+-.++.+..=-|
T Consensus 78 ~~DIk~L~~~~l~kl-~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~ 156 (169)
T PF08623_consen 78 EHDIKMLCHLMLSKL-AQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSP 156 (169)
T ss_dssp -HHHHHHHHHHHHHH-HHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH
T ss_pred cHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCH
Confidence 55666555 445544 44456677777888888888878766544334445554444 44444444444456666667
Q ss_pred -HHHHHHhhhh
Q 041545 371 -LFIRSIEWAE 380 (554)
Q Consensus 371 -Lf~kl~~WA~ 380 (554)
-|..+++|..
T Consensus 157 ~~~~~f~~~i~ 167 (169)
T PF08623_consen 157 NKWNEFVEWIK 167 (169)
T ss_dssp -HHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 8888988865
No 166
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=45.51 E-value=1.2e+02 Score=35.16 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=35.6
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHH
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALAS 137 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~ 137 (554)
++|.|..+-- ..+....|..++.|+..++++.-+ ....+.+..+.+++...++.+.-
T Consensus 429 ilP~l~~l~~---~tt~~~vkvn~L~c~~~l~q~lD~--~~v~d~~lpi~~~~~~~dp~iv~ 485 (700)
T KOG2137|consen 429 ILPRLKNLAF---KTTNLYVKVNVLPCLAGLIQRLDK--AAVLDELLPILKCIKTRDPAIVM 485 (700)
T ss_pred HHHHhhcchh---cccchHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHhcCCCcHHHH
Confidence 6666666633 355666788888888888766643 34555556666667666655543
No 167
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=44.72 E-value=2.6e+02 Score=25.87 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=59.9
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCC------
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNST------ 88 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~------ 88 (554)
...+|.++...=|++|++-|..=+.+...+ .......+..++..|..++....
T Consensus 9 ~~~~L~S~k~keR~~al~~L~~il~~~~~~---------------------~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~ 67 (155)
T PF11640_consen 9 ILRLLSSDKIKERNKALEDLRHILSSPPRV---------------------DSLNDKQWHSIFEALFRCIEKEKEAYSRK 67 (155)
T ss_pred HHHHHhccccchHHHHHHHHHHHHcCcccc---------------------ccCCcchHHHHHHHHHHHHHHHHHHHhcC
Confidence 567999999999999999999888776421 12223344555555555554211
Q ss_pred -CCccHhH------HHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCCC
Q 041545 89 -GESNISL------KLTAVSTLEVLANRFASY--DSVFNLCLASVTNSISSRN 132 (554)
Q Consensus 89 -~~~~~~l------rq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~~~ 132 (554)
....... -+.+..+|..+.+...+. ...+..++..+++.+..++
T Consensus 68 ~~~~~s~~~~~~~RL~~~a~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 68 KSSSASTATTAESRLSSCASALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 1111111 234557777777766554 2367788888888887654
No 168
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=43.93 E-value=6.2e+02 Score=30.02 Aligned_cols=153 Identities=12% Similarity=0.083 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSI-SSRNLALASSCLRTTGALVN 148 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l-~~~~~~l~~sallcl~~l~~ 148 (554)
...|......+...+..-.. ..++|.+.-.++..+....|.+ .-+-+|.+++.+ ++.+..=..--+-++.-++.
T Consensus 690 ~~vf~~~ldvil~~ls~f~k--~E~iRsavrft~hRmI~~lg~~---vlPfipklie~lL~s~d~kEmvdfl~flsQLih 764 (980)
T KOG2021|consen 690 MVVFSNILDVILVTLSFFNK--FENIRSAVRFTFHRMIPILGNK---VLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIH 764 (980)
T ss_pred HHHHHHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHHhcchh---hhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34566655555555543222 2358999999999999999864 223355555543 44454444556778899999
Q ss_pred HhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH-----HHhccccc-ccHHHHHHHH
Q 041545 149 VLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVI-----DKLGGFLN-PYLGDITELL 222 (554)
Q Consensus 149 vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv-----~~l~~Fls-PYL~~il~~l 222 (554)
.++...-|.+.++.|+++....++- .+.....+.+.......+.-+-++.++.+. .-+..... -|++.++.-+
T Consensus 765 kfk~~~~~ilnqmlppll~rIfsvi-~r~a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l 843 (980)
T KOG2021|consen 765 KFKTDCYQILNQMLPPLLNRIFSVI-ERIAKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDL 843 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cccCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHh
Confidence 9999999999999999988666532 111110000111112235557777777776 22332322 4555566554
Q ss_pred -hhccCC
Q 041545 223 -VLCPEY 228 (554)
Q Consensus 223 -~l~~~~ 228 (554)
..++.|
T Consensus 844 ~~~a~~y 850 (980)
T KOG2021|consen 844 VTYAPQY 850 (980)
T ss_pred hhccccc
Confidence 334554
No 169
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.92 E-value=6.3e+02 Score=30.15 Aligned_cols=235 Identities=11% Similarity=0.134 Sum_probs=123.4
Q ss_pred CCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cC-C
Q 041545 57 DSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSI----SS-R 131 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l----~~-~ 131 (554)
++++.- +-.+.-.|+...++..|..-+...++.|+.=+-++-+-.+..+=...- |....++...++.+ .+ +
T Consensus 531 ~~~~~i-f~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~---p~~~~~l~~Lteiv~~v~KNPs 606 (960)
T KOG1992|consen 531 NSNAKI-FGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAII---PHAPELLRQLTEIVEEVSKNPS 606 (960)
T ss_pred Cccccc-cchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhh---hhhhHHHHHHHHHHHHHhcCCC
Confidence 344442 233444556667777777666655444444455555555544433331 23334444433332 33 3
Q ss_pred ChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccc
Q 041545 132 NLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFL 211 (554)
Q Consensus 132 ~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fl 211 (554)
++.--...+=.+|.+.+..+..-..-++.+..+++..++.+- . +| -.+..-.++-.++.++++-.+-+
T Consensus 607 ~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il--~---------eD-I~EfiPYvfQlla~lve~~~~~i 674 (960)
T KOG1992|consen 607 NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTIL--S---------ED-IQEFIPYVFQLLAVLVEHSSGTI 674 (960)
T ss_pred CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH--H---------HH-HHHHHHHHHHHHHHHHHhcCCCC
Confidence 455556777778888887776665555555555554444421 1 01 13466677777888888766633
Q ss_pred cccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhH----hhHHHHHh
Q 041545 212 NPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLA----LPPLLKIY 287 (554)
Q Consensus 212 sPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~L----lpal~~~~ 287 (554)
.+...+++.. .++|..-.- ..++ .++.++.+.+-++=+ .+.. ++.+...+
T Consensus 675 p~~~~~l~~~-lLsp~lW~r-~gNi-palvrLl~aflk~g~-----------------------~~~~~~~~l~~iLGif 728 (960)
T KOG1992|consen 675 PDSYSPLFPP-LLSPNLWKR-SGNI-PALVRLLQAFLKTGS-----------------------QIVEAADKLSGILGIF 728 (960)
T ss_pred chhHHHHHHH-hcCHHHHhh-cCCc-HHHHHHHHHHHhcCc-----------------------hhhcccccchhHHHHH
Confidence 3333333333 234433110 0111 122333333333333 2222 56677777
Q ss_pred hhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhh
Q 041545 288 SGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDL 334 (554)
Q Consensus 288 ~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~ 334 (554)
+.++.....+- .=|.+|...+..++...+..+...++..+++=+.-
T Consensus 729 qkLiaSka~Dh-~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqn 774 (960)
T KOG1992|consen 729 QKLIASKANDH-HGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQN 774 (960)
T ss_pred HHHhcCcccch-hHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhc
Confidence 66553222222 33678888888888888888888888888774433
No 170
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=41.94 E-value=3.5e+02 Score=31.33 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=62.8
Q ss_pred HHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHH
Q 041545 30 ALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANR 109 (554)
Q Consensus 30 al~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~ 109 (554)
+|.+|++-+=+-+..++.|-|+|-++.. ---.|-+++.-...+++. +.+..|-.+.+.++-...+-
T Consensus 158 vLklLsEEvFdfSaeqmTq~k~~~LkNq-----------m~~EF~qIF~lc~qiLE~---~~~~SLi~ATLesllrfl~w 223 (1053)
T COG5101 158 VLKLLSEEVFDFSAEQMTQVKKRLLKNQ-----------MKIEFPQIFGLCKQILEY---SRDESLIEATLESLLRFLEW 223 (1053)
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHhh
Confidence 5667777665555444444322222211 122344444555555553 44667888888888888877
Q ss_pred hCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 041545 110 FASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNV 149 (554)
Q Consensus 110 ~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~v 149 (554)
.|-+.-....++..+.+.+.+ .+..|..++-|+.++++-
T Consensus 224 iPl~yIfeTnIieLv~~~f~s-~pd~r~~tl~CLtEi~~L 262 (1053)
T COG5101 224 IPLDYIFETNIIELVLEHFNS-MPDTRVATLSCLTEIVDL 262 (1053)
T ss_pred CchhHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHhh
Confidence 765433456778887776643 244567889999998863
No 171
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=41.46 E-value=4.4e+02 Score=27.61 Aligned_cols=146 Identities=10% Similarity=0.090 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCC-----c-hHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYD-----S-VFNLCLASVTNSISSRNLALASSCLRTT 143 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~-----~-~~~~~L~~v~~~l~~~~~~l~~sallcl 143 (554)
.|+=..++..|...+.. .-...+-+.|++.-+.|-++.|++. + +...++|.. +...-.|+..-+-.+
T Consensus 49 IP~k~~v~krLaqCL~P---~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~----~~asi~Vkp~lL~i~ 121 (307)
T PF04118_consen 49 IPHKLQVSKRLAQCLNP---ALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLF----SYASIQVKPQLLDIY 121 (307)
T ss_pred eCcHHHHHHHHHHhcCC---CCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHH----HHHHHhhHHHHHHHH
Confidence 44444566667777764 3344588999999999999999761 1 122333322 222344666666666
Q ss_pred HHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHH-HHH
Q 041545 144 GALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDIT-ELL 222 (554)
Q Consensus 144 ~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il-~~l 222 (554)
-.-.-.+|....|.++.++..++..+++. ..+....++..+..+-+.++.- |.-..+ ..+
T Consensus 122 e~~~lpL~~~L~p~l~~li~slLpGLede----------------~sE~~~~~~~ll~~l~~~v~~~---~F~~~lwl~i 182 (307)
T PF04118_consen 122 EKYYLPLGPALRPCLKGLILSLLPGLEDE----------------GSEFFDRTLKLLDKLKEAVGDK---YFWQCLWLCI 182 (307)
T ss_pred HHHhcCccHHHHHHHHHHHHHhccccccC----------------CchHHHHHHHHHHHHHHhcChh---HHHHHHHHHH
Confidence 66555778877888888888877755431 2235555666666666655533 222333 333
Q ss_pred hhccCCCCCCChhHHHHHHHHHHHHHhhhh
Q 041545 223 VLCPEYLPGSDPKLKVKADAVRRLLTDKIQ 252 (554)
Q Consensus 223 ~l~~~~~~~~~~~~~s~~~~l~~~la~~v~ 252 (554)
..+|.. |..++ ..+.++.|
T Consensus 183 i~sp~~----------Rl~al-~~l~~~l~ 201 (307)
T PF04118_consen 183 ITSPSR----------RLGAL-NYLLRRLP 201 (307)
T ss_pred hcCcch----------hHHHH-HHHHHhCC
Confidence 333431 44455 77777777
No 172
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=41.43 E-value=9.6e+02 Score=31.51 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=43.9
Q ss_pred HHhHhhHHHHHhhhhhhcCcchHH-HHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhh
Q 041545 276 VRLALPPLLKIYSGAVDAGDSSLV-IAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDL 334 (554)
Q Consensus 276 ~r~Llpal~~~~~~~~~~~~~~l~-~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~ 334 (554)
++-+||.+.+.+..++......++ .=.++|...|...+...-..+=..+++.|.++|+.
T Consensus 1454 L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1454 VNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 455778788877777654333333 44589999999988877778888899888888876
No 173
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=40.86 E-value=2.9e+02 Score=25.35 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHH
Q 041545 116 VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRKKSREISTYVDVQNESNEDKTQRESLM 193 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~ 193 (554)
.-.+++..+.+.|.+.++.+.-.|+..+-.++..||.++-..+ ..++..+.+.+.. .....+.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---------------~~~~~Vk 102 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---------------TKNEEVR 102 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---------------cCCHHHH
Confidence 3456677777778788899999999999999999999986655 3444444443322 1234566
Q ss_pred HHHHHHHHHHHHHhcccccccHHHHHHH
Q 041545 194 ASVLITLEAVIDKLGGFLNPYLGDITEL 221 (554)
Q Consensus 194 ~s~lsaL~~lv~~l~~FlsPYL~~il~~ 221 (554)
.-++..+..-...+++- |.+..+-..
T Consensus 103 ~kil~li~~W~~~f~~~--~~l~~i~~~ 128 (142)
T cd03569 103 QKILELIQAWALAFRNK--PQLKYVVDT 128 (142)
T ss_pred HHHHHHHHHHHHHhCCC--cccHHHHHH
Confidence 77777777777766654 554444433
No 174
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=40.81 E-value=2.9e+02 Score=30.92 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=90.1
Q ss_pred CChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCC--CCccHhHHHHH
Q 041545 22 GEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNST--GESNISLKLTA 99 (554)
Q Consensus 22 ~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~--~~~~~~lrq~A 99 (554)
-.+.+|.|.|.+|+.-....+ .| |....++...- ++....+|+.+
T Consensus 295 a~~~lq~kIL~~L~kS~~Aa~-----------------------------~~----~~~~~i~~~~l~~~~~~~klk~~~ 341 (501)
T PF13001_consen 295 ASPRLQEKILSLLSKSVIAAT-----------------------------SF----PNILQIVFDGLYSDNTNSKLKSLA 341 (501)
T ss_pred CCHHHHHHHHHHHHHhHHHHh-----------------------------CC----ccHHHHHhccccCCccccccchhc
Confidence 568899999999994332222 11 33333333211 23356789999
Q ss_pred HHHH---HHHHHHhCCCCchHHHHHHHHHH----Hh--------cCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHH
Q 041545 100 VSTL---EVLANRFASYDSVFNLCLASVTN----SI--------SSRNLALASSCLRTTGALVNVLGLKALAELPLIMEN 164 (554)
Q Consensus 100 l~~L---~~lA~~~g~~~~~~~~~L~~v~~----~l--------~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ 164 (554)
+.-+ ....+.++.. .+..+-+.+.. .+ .+.+..+|+.++-|+|.+++..-.-+.-- -.++..
T Consensus 342 l~F~~~~~~~~~~~~~~--~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~ 418 (501)
T PF13001_consen 342 LQFIRGSSWIFKHISPQ--ILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEF 418 (501)
T ss_pred chhhhcchHHhhhcCHH--HHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHH
Confidence 8888 6666666632 22222222322 23 13578899999999999998765543111 233444
Q ss_pred HHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHHhhccCCCCCCChhHHHHHHHH
Q 041545 165 VRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN-PYLGDITELLVLCPEYLPGSDPKLKVKADAV 243 (554)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls-PYL~~il~~l~l~~~~~~~~~~~~~s~~~~l 243 (554)
++..++. ...++..++-.||..+..+++..-. +....-+....+.-.+.. +.....|+.++
T Consensus 419 LF~sL~~----------------~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~R~~av 480 (501)
T PF13001_consen 419 LFDSLED----------------ESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQ--SEVRSCRYAAV 480 (501)
T ss_pred HHHHhhC----------------cchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhcc--chhHHHHHHHH
Confidence 4444421 0223455555555555555444333 222222222111211111 22344566666
Q ss_pred HHHHHhhhh
Q 041545 244 RRLLTDKIQ 252 (554)
Q Consensus 244 ~~~la~~v~ 252 (554)
+......|
T Consensus 481 -k~an~~fp 488 (501)
T PF13001_consen 481 -KYANACFP 488 (501)
T ss_pred -HHHHHhCC
Confidence 66666665
No 175
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.72 E-value=5.1e+02 Score=28.10 Aligned_cols=146 Identities=16% Similarity=0.068 Sum_probs=83.5
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH----HHHHHHHHhhccCCCC
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR----KMCSEVVLLVDNSTGE 90 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~----~l~~~L~~il~~~~~~ 90 (554)
|+.||+.+++.||..+-.-+.+---+ ....-.+. +++|.|..+.+ ++
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd--------------------------~~~Rk~Laqaep~lv~~Lv~Lmd---~~ 263 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVD--------------------------RRARKILAQAEPKLVPALVDLMD---DG 263 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhh--------------------------HHHHHHHHhcccchHHHHHHHHh---CC
Confidence 67899999999998765555421111 11111111 37889999888 34
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhh
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSV-FNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKS 169 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~-~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l 169 (554)
++. .|--|-.+|..+|.----..+. =..-+|..++.++++-.++.-.++.|+-.+.-.=+...+-.=..|+.+++.++
T Consensus 264 s~k-vkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL 342 (550)
T KOG4224|consen 264 SDK-VKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLL 342 (550)
T ss_pred ChH-HHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHH
Confidence 333 4444456777666422111221 22346777888888888888888888855543322222111223555666666
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 170 REISTYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
... .+++.+..+++++-.+..
T Consensus 343 ~~~---------------dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 343 RAG---------------DNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hcC---------------CchhhhhhHHHHHHHHhh
Confidence 531 145577778888866655
No 176
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=40.02 E-value=3e+02 Score=25.33 Aligned_cols=89 Identities=10% Similarity=0.157 Sum_probs=58.4
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhh--HHHHHHHHhhhhhhhhhhhhcccc
Q 041545 106 LANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELP--LIMENVRKKSREISTYVDVQNESN 183 (554)
Q Consensus 106 lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP--~imP~ll~~l~~~~~~~~~~~~~~ 183 (554)
||.....+...-..++..+.+.+.+.++.+.-.|+..+-.++..||.++-...- .++..+.+.+...
T Consensus 24 icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~----------- 92 (144)
T cd03568 24 VCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR----------- 92 (144)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-----------
Confidence 444444432234566677777777788999999999999999999998865553 3444444433321
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhcc
Q 041545 184 EDKTQRESLMASVLITLEAVIDKLGG 209 (554)
Q Consensus 184 ~~~d~~~~l~~s~lsaL~~lv~~l~~ 209 (554)
....+..-++..+....+.++.
T Consensus 93 ----~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 93 ----VHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred ----CCHHHHHHHHHHHHHHHHHhCC
Confidence 2345677777777777776663
No 177
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=39.67 E-value=4.5e+02 Score=27.15 Aligned_cols=130 Identities=15% Similarity=0.078 Sum_probs=73.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHH-----HHHHhhccCC
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCS-----EVVLLVDNST 88 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~-----~L~~il~~~~ 88 (554)
+++.-+ ++...+.+=+|.++++=+...+. -.+.|..+-. ....+++.-
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~-------------------------~~~~~~~~~~~~~~~~~~~fl~ll- 114 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPS-------------------------RVELFLELAKQDDSDPYSPFLKLL- 114 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSS-------------------------SHHHHHHHHH-TTH--HHHHHHH--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHH-------------------------HHHHHHHhcccccchhHHHHHHHh-
Confidence 455544 56899999999999996655442 1333443221 233333211
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhc----CCChhHHHHHHHHHHHHHHHhchhhhchhhHHHH
Q 041545 89 GESNISLKLTAVSTLEVLANRFASYDSV-FNLCLASVTNSIS----SRNLALASSCLRTTGALVNVLGLKALAELPLIME 163 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~~~~-~~~~L~~v~~~l~----~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP 163 (554)
+..|.-.+..|...+..++..-+..... -.+.++...+.+. +++.++...++-|++.+.+.=.-+..=.=...++
T Consensus 115 ~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~ 194 (312)
T PF03224_consen 115 DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVS 194 (312)
T ss_dssp S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHH
Confidence 2447777888888888887766553221 2355565555443 3556777888999999987655554333377777
Q ss_pred HHHHhhh
Q 041545 164 NVRKKSR 170 (554)
Q Consensus 164 ~ll~~l~ 170 (554)
.++..+.
T Consensus 195 ~l~~iL~ 201 (312)
T PF03224_consen 195 PLFDILR 201 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777773
No 178
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=39.20 E-value=2.5e+02 Score=33.03 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCc---hHH--HHHHHHHHHhcC--CChhHHHHHHH
Q 041545 69 AFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDS---VFN--LCLASVTNSISS--RNLALASSCLR 141 (554)
Q Consensus 69 ~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~---~~~--~~L~~v~~~l~~--~~~~l~~sall 141 (554)
....|...+..|..++...+ +. ...++|++++|+---++.. .+. .++|.+.+.+.. .++.+.--++.
T Consensus 484 ~k~~f~~~i~~L~~~v~~~~---~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 484 LKELFVDFIGDLAKIVSSGD---SE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred HHHHHHHHHHHHHHHhhcCC---cH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 46678888999888887432 22 3678999999986544311 222 345555565532 34456666678
Q ss_pred HHHHHHHHhchhhhchh--hHHHHHHHHhhhhh
Q 041545 142 TTGALVNVLGLKALAEL--PLIMENVRKKSREI 172 (554)
Q Consensus 142 cl~~l~~vLg~~~iP~L--P~imP~ll~~l~~~ 172 (554)
++|++|. -++..+.| ..+++.+++.+++.
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhh
Confidence 8888884 55556665 48999999988874
No 179
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.19 E-value=1.5e+02 Score=26.80 Aligned_cols=72 Identities=21% Similarity=0.165 Sum_probs=50.5
Q ss_pred HhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHH
Q 041545 17 ASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLK 96 (554)
Q Consensus 17 ~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lr 96 (554)
.=|+++++.|...||.+|..=+++-+. .| -.+.+.. +++..|..++..... ...+|
T Consensus 44 krl~~~n~~v~l~AL~lLe~~vkNcg~-----------------~f--~~ev~s~---~fl~~L~~l~~~~~~--~~~Vk 99 (133)
T smart00288 44 KRLNNKNPHVALLALTLLDACVKNCGS-----------------KF--HLEVASK---EFLNELVKLIKPKYP--LPLVK 99 (133)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHCCH-----------------HH--HHHHHhH---HHHHHHHHHHcCCCC--cHHHH
Confidence 367788999999999999977776442 11 1111112 366788888885322 22399
Q ss_pred HHHHHHHHHHHHHhCC
Q 041545 97 LTAVSTLEVLANRFAS 112 (554)
Q Consensus 97 q~Al~~L~~lA~~~g~ 112 (554)
+.++..+..-+..|+.
T Consensus 100 ~kil~li~~W~~~f~~ 115 (133)
T smart00288 100 KRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999975
No 180
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=38.85 E-value=3.6e+02 Score=25.84 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHH
Q 041545 119 LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLI 198 (554)
Q Consensus 119 ~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~ls 198 (554)
.++....|.| +++|..|-.|+..+. ..+...+|++| =.+.+.+++...... . ....+.-.
T Consensus 11 ~llrqa~EKi----DrvR~~A~~~l~~ll-~~~~~~~~~ip-~~~~L~~i~~~~~~~--~------------~~w~~~~~ 70 (193)
T PF12612_consen 11 GLLRQAAEKI----DRVREVAGKCLQRLL-HSQDPTIPHIP-HREELQDIFPSESEA--S------------LNWSSSSE 70 (193)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHh-cCCCccccCCC-cHHHHHHHccccccc--c------------cccCCHHH
Confidence 3444444444 789999999999998 55655677888 446666666542210 0 00111112
Q ss_pred HHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 041545 199 TLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRL 278 (554)
Q Consensus 199 aL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~ 278 (554)
++..+++=+. +.-|-..++..++.+.. ++.+.-++....++.+.+.+.-. +. .. ...
T Consensus 71 ~F~~l~~LL~--~~~y~~~ll~Glv~S~G--~~tesl~~~s~~AL~~~~~~~~~------------~~---~~----~~~ 127 (193)
T PF12612_consen 71 YFPRLVKLLD--LPEYRYSLLSGLVVSAG--GLTESLVRASSAALLSYLRELSD------------SP---EE----LEQ 127 (193)
T ss_pred HHHHHHHHhc--cHHHHHHHHhHHHhcCC--CCchhHHHHHHHHHHHHHHHhhc------------CH---HH----HHH
Confidence 2222221111 12577888888755543 23344555566666666642100 00 01 555
Q ss_pred HhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHh
Q 041545 279 ALPPLLKIYSGAVDAGDSSLVIAFEILGNIISR 311 (554)
Q Consensus 279 Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~ 311 (554)
++..+.+.++.-. .++..+.++|+.+...++.
T Consensus 128 v~~~l~~il~~~~-~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 128 VLSDLLSILKENL-RNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HHHHHHHHHHHhC-CCCCeeecHHHHHHHHHhC
Confidence 6666666665422 2233344777777777765
No 181
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.80 E-value=8e+02 Score=29.82 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHH----HHHHHHhcCCChhHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCL----ASVTNSISSRNLALASSCLRTTGA 145 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L----~~v~~~l~~~~~~l~~sallcl~~ 145 (554)
+.-..+.+.+-..++. .++.-+|-.|++++..--.-....+..|-++. +.+++++..+++-+...++-|+-.
T Consensus 798 v~iv~kIl~r~~~~LS----~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~ 873 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLS----HESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQ 873 (1014)
T ss_pred HHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHH
Confidence 3344556666666666 45667888888888876666665543444433 457888888999999999999999
Q ss_pred HHHHhchhh-hchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHH
Q 041545 146 LVNVLGLKA-LAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLG 216 (554)
Q Consensus 146 l~~vLg~~~-iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~ 216 (554)
|+.-.|+=. --++..+.|.+=..+++.. ++... ..-..+.+.+-.=-+++++++.|. |||+
T Consensus 874 m~~~sgDFv~sR~l~dvlP~l~~~~~~~~-~~~~~--------~~~~~qta~yKlq~k~i~~~~~~v-~~l~ 935 (1014)
T KOG4524|consen 874 MGKYSGDFVASRFLEDVLPWLKHLCQDSF-ARTIL--------KELRIQTAEYKLQLKSISKLVKFV-PYLE 935 (1014)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhh--------hhHHHHHHHHHHHHHHHhcCCCcc-eeee
Confidence 999888754 4456667776655555422 00000 112234455555556667777765 5654
No 182
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.25 E-value=8.8e+02 Score=30.16 Aligned_cols=73 Identities=18% Similarity=0.059 Sum_probs=52.4
Q ss_pred HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHh
Q 041545 75 KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSIS-SRNLALASSCLRTTGALVNVL 150 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vL 150 (554)
.++|-+..+.++.+.-++.+++++|..||+.+.--- ...+..-|+..+..+. ++++.+|..+++++|-++=.+
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 356666666676666778889999999988764322 1246667777776665 688999999888888776554
No 183
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=38.08 E-value=85 Score=30.66 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh-hchhh
Q 041545 99 AVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA-LAELP 159 (554)
Q Consensus 99 Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~-iP~LP 159 (554)
.+..+..+-+++|.. +|.+..++..+-+.-.+++-..+..+=.|+|+.++.+|++. +..+|
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 344555555667765 55788888888887777777888999999999999999995 44444
No 184
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=37.33 E-value=3.5e+02 Score=30.67 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=7.6
Q ss_pred HHHHHHHHHhcc
Q 041545 29 QALGLLCETVKD 40 (554)
Q Consensus 29 kal~ll~~kl~~ 40 (554)
+.++.++..++.
T Consensus 325 ~l~~~l~~~~~~ 336 (618)
T PF01347_consen 325 ELLKELADLLEE 336 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC
Confidence 566777766633
No 185
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.26 E-value=1.1e+02 Score=30.52 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=67.8
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH---Hhc
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVN---VLG 151 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~---vLg 151 (554)
.++-|-.|.++- .+-+...|-.|-..+.-+-.+-|.+ .|++..++.-+-..+...|.++...++-.+..|+. ..|
T Consensus 112 y~~yLp~F~dGL-~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 112 YCPYLPLFFDGL-AETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred chHHHHHHhhhh-hhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccc
Confidence 666666666653 2335556777777777777777754 56677766666778888899999999888777665 467
Q ss_pred hhhhchhhHHHHHHHHhhhh
Q 041545 152 LKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 152 ~~~iP~LP~imP~ll~~l~~ 171 (554)
+..+||..+++|.+ ..++.
T Consensus 191 ~aLVPfYRQlLp~~-n~~k~ 209 (262)
T KOG3961|consen 191 AALVPFYRQLLPVL-NTFKN 209 (262)
T ss_pred hhhhhHHHHhhhhh-hhhcc
Confidence 88999999999864 45555
No 186
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=36.88 E-value=1.5e+02 Score=33.04 Aligned_cols=66 Identities=20% Similarity=0.115 Sum_probs=49.9
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545 89 GESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
.+++..+|+-|+.||+.|+++.+.--..=..++.-..+.+..+.+.++.+.--|+++|+..+....
T Consensus 384 ~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~ 449 (501)
T PF13001_consen 384 SSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLP 449 (501)
T ss_pred CcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccc
Confidence 356788999999999999999986311113455556667777889999999999999988776543
No 187
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=36.68 E-value=43 Score=23.42 Aligned_cols=23 Identities=22% Similarity=-0.018 Sum_probs=20.2
Q ss_pred hhHHhhhcCChhHHHHHHHHHHH
Q 041545 14 NLYASLFNGEICTCEQALGLLCE 36 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~ 36 (554)
.|..||+++++.||+.|...|.+
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~n 38 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGN 38 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 47789999999999999998864
No 188
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=35.85 E-value=5e+02 Score=26.61 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=53.2
Q ss_pred hHHHHHHHHH-HHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHH
Q 041545 116 VFNLCLASVT-NSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMA 194 (554)
Q Consensus 116 ~~~~~L~~v~-~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~ 194 (554)
.+..++..++ -++.+.+..+|.-++-|+|=.|=.-+.-+..+++.++-.+ + . ..+.+..
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~-~---~----------------~~~~v~~ 82 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL-Q---K----------------DDEEVKI 82 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH-H---h----------------CCHHHHH
Confidence 5668887655 7889999999999999999998888877888888777654 2 1 0234566
Q ss_pred HHHHHHHHHHHHhc
Q 041545 195 SVLITLEAVIDKLG 208 (554)
Q Consensus 195 s~lsaL~~lv~~l~ 208 (554)
.++-++-.++-.-|
T Consensus 83 ~al~~l~Dll~~~g 96 (298)
T PF12719_consen 83 TALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHHHcC
Confidence 66666655555544
No 189
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.47 E-value=3.5e+02 Score=24.75 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHhchhhhchhh--HHHHH-HHHhhhhhhhhhhhhcccccchhhHHHH
Q 041545 117 FNLCLASVTNSISS-RNLALASSCLRTTGALVNVLGLKALAELP--LIMEN-VRKKSREISTYVDVQNESNEDKTQRESL 192 (554)
Q Consensus 117 ~~~~L~~v~~~l~~-~~~~l~~sallcl~~l~~vLg~~~iP~LP--~imP~-ll~~l~~~~~~~~~~~~~~~~~d~~~~l 192 (554)
-..++..+.+.|.. .++++.-.|+..+-.++..||.+|-...- .++.. +++.+... .+....+
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~-------------~~~~~~V 102 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPK-------------NNPPTIV 102 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHccc-------------CCCcHHH
Confidence 34556666666653 57778888899999999999999875553 44444 44444320 0123456
Q ss_pred HHHHHHHHHHHHHHhccccc-ccHHHHHHH
Q 041545 193 MASVLITLEAVIDKLGGFLN-PYLGDITEL 221 (554)
Q Consensus 193 ~~s~lsaL~~lv~~l~~Fls-PYL~~il~~ 221 (554)
..-++..++..-+.+++--. +|+.++-..
T Consensus 103 k~kil~li~~W~~~f~~~~~l~~i~~~y~~ 132 (141)
T cd03565 103 QEKVLALIQAWADAFRGSPDLTGVVEVYEE 132 (141)
T ss_pred HHHHHHHHHHHHHHhCCCccchHHHHHHHH
Confidence 67777777777776654322 444444444
No 190
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=35.21 E-value=3e+02 Score=25.30 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=54.5
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccC--CCCccH
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNS--TGESNI 93 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~--~~~~~~ 93 (554)
-.-|+++.+.|.-.||.||..=+++=+. .| + .+.+.. +++.+|..++... +...+.
T Consensus 44 ~krl~~~n~~v~l~AL~LLe~~vkNCG~-----------------~f-h-~evas~---~Fl~el~kl~~~k~~~~~~~~ 101 (139)
T cd03567 44 AHKIQSPQEKEALQALTVLEACMKNCGE-----------------RF-H-SEVGKF---RFLNELIKLVSPKYLGSRTSE 101 (139)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHcCH-----------------HH-H-HHHHhH---HHHHHHHHHhccccCCCCCCH
Confidence 3467788888888888888766655331 11 0 111111 3566777777532 123567
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLAS 123 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~ 123 (554)
.+|+..+..+..-+..|+. +|.+.++...
T Consensus 102 ~Vk~kil~li~~W~~~f~~-~p~~~~~Y~~ 130 (139)
T cd03567 102 KVKTKIIELLYSWTLELPH-EPKIKEAYDM 130 (139)
T ss_pred HHHHHHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 8999999999999999985 5665544443
No 191
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.33 E-value=8.7e+02 Score=28.97 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=94.2
Q ss_pred hhhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCc
Q 041545 12 PVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGES 91 (554)
Q Consensus 12 ~~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~ 91 (554)
+.+|..||+......+..||.-+-.-+.+..+ -..++|..+.-+. +.
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----------------------------vS~~Fp~VVKNVa----sk 83 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----------------------------VSLLFPAVVKNVA----SK 83 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc-----------------------------HHHHHHHHHHHhh----cc
Confidence 56788999999999999999776655544332 1224555555554 44
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFN-LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSR 170 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~-~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~ 170 (554)
+.++|.-...=|= +|+.++|.+. --+...++.+.++|.-+|++|+..+++| -+|.|.|-++...+
T Consensus 84 n~EVKkLVyvYLl----rYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsI----------Rvp~IaPI~llAIk 149 (968)
T KOG1060|consen 84 NIEVKKLVYVYLL----RYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSI----------RVPMIAPIMLLAIK 149 (968)
T ss_pred CHHHHHHHHHHHH----HHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhc----------chhhHHHHHHHHHH
Confidence 6677766554443 5555556322 2356677889999999999999998876 36788888777776
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 171 EISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
++- .|....+--++--|+.++-.- ..---+-|.+++..+
T Consensus 150 ~~~------------~D~s~yVRk~AA~AIpKLYsL-d~e~k~qL~e~I~~L 188 (968)
T KOG1060|consen 150 KAV------------TDPSPYVRKTAAHAIPKLYSL-DPEQKDQLEEVIKKL 188 (968)
T ss_pred HHh------------cCCcHHHHHHHHHhhHHHhcC-ChhhHHHHHHHHHHH
Confidence 632 122334555555556555432 111123555666553
No 192
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=33.64 E-value=1.8e+02 Score=32.40 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=68.9
Q ss_pred hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHH
Q 041545 19 LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLT 98 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~ 98 (554)
|+.+.+..|-=||+.+..-|-..+.+- ++ -.+.++..|-.|.-+-.-....+-.-|..++.. +.....+.|+
T Consensus 56 lkd~~~~~ra~alqv~~~~l~gsk~fl-s~-----a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~--e~~~~~~tq~ 127 (728)
T KOG4535|consen 56 LKDPSPKTRACALQVLSAILEGSKQFL-SV-----AEDTSDHAFTPFSVMIACSIRELHRCLLLALVA--ESSSQTVTQI 127 (728)
T ss_pred cCCCChhHHHHHHHHHHHHHHhhHHHH-HH-----HhccCCcCCCchHHHHHHHHHHHHHHHHHHHHH--hcCchhHHHH
Confidence 678888888888888876654433210 01 122333343333333333333444455555554 3433334443
Q ss_pred HHHHHHHHHHHhCCCC---chHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc
Q 041545 99 AVSTLEVLANRFASYD---SVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLG 151 (554)
Q Consensus 99 Al~~L~~lA~~~g~~~---~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg 151 (554)
+-||..+..+-+-+. ..+.+..+.+-..|.+.|.+++.|+++.++.++..-+
T Consensus 128 -~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~ 182 (728)
T KOG4535|consen 128 -IKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHA 182 (728)
T ss_pred -HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCC
Confidence 344444444433221 1233455555667888999999999999999987654
No 193
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=33.07 E-value=1.4e+02 Score=25.74 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHhhhh
Q 041545 115 SVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKKSRE 171 (554)
Q Consensus 115 ~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~l~~ 171 (554)
|.+..++..+..+++.-.+.+|..|+.++.-+.+.++.. +-.+-.+++|..+..+..
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 456667777778888888999999999999999999999 677888999988887765
No 194
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=33.05 E-value=5.9e+02 Score=26.61 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc----c
Q 041545 138 SCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN----P 213 (554)
Q Consensus 138 sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls----P 213 (554)
-.+.|++.+++.+|..+.|++|.++..+++.--.- ..+ +...-.+...+-+..+.+++++.+..+. .
T Consensus 91 evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~M------I~~---d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~ 161 (319)
T PF08767_consen 91 EVLSLMATIINKLGELIQPQVPQILEAVFECTLPM------INK---DFEEYPEHRVNFFKLLRAINEHCFPALLQLPPE 161 (319)
T ss_dssp HHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHH------HSS---TSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HH
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH------HHh---hhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHH
Confidence 45779999999999999999999999888743331 111 1111234667788888888887554432 2
Q ss_pred cHHHHHHHH
Q 041545 214 YLGDITELL 222 (554)
Q Consensus 214 YL~~il~~l 222 (554)
....++..+
T Consensus 162 ~f~~~idsi 170 (319)
T PF08767_consen 162 QFKLVIDSI 170 (319)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555444
No 195
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=32.49 E-value=1.2e+02 Score=27.25 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=10.8
Q ss_pred hhhcCChhHHHHHHHHHH
Q 041545 18 SLFNGEICTCEQALGLLC 35 (554)
Q Consensus 18 ll~~~~~~vr~kal~ll~ 35 (554)
=|++..++|+-|||.+|-
T Consensus 46 RL~~~~~hVK~K~Lrilk 63 (122)
T cd03572 46 RLKRSSPHVKLKVLKIIK 63 (122)
T ss_pred HhcCCCCcchHHHHHHHH
Confidence 455555666666666654
No 196
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.14 E-value=2.4e+02 Score=31.42 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=70.3
Q ss_pred hcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHH
Q 041545 20 FNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTA 99 (554)
Q Consensus 20 ~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~A 99 (554)
..|+..+|+-|+.-|-+....-+...++|| . ..+..++.+-.+..+.++.-.|
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~--------------------~-------~~ldaii~gL~D~~~~~V~lea 320 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHK--------------------T-------TQLDAIIRGLYDDLNEEVQLEA 320 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhH--------------------H-------HHHHHHHHHHhcCCccHHHHHH
Confidence 456678888888888876655232222221 1 2233333332234445677788
Q ss_pred HHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545 100 VSTLEVLANRFASY--DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 100 l~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
+.||..+..+.-.. .++|.++.-.+.....+.++.+|.+++..+|.+....|-+-
T Consensus 321 m~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~ 377 (533)
T KOG2032|consen 321 MKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW 377 (533)
T ss_pred HHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc
Confidence 88887777765443 45677666666666777889999999999999998877654
No 197
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=31.40 E-value=3.9e+02 Score=24.05 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=63.6
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHHhhhhhhhhhhhhccccc
Q 041545 107 ANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRKKSREISTYVDVQNESNE 184 (554)
Q Consensus 107 A~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~~l~~~~~~~~~~~~~~~ 184 (554)
|.....+...-..++..+.+.+.+.++.+.-.|+..+..++..||.++--.+ .+++..+.+.+....
T Consensus 25 cD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~----------- 93 (133)
T smart00288 25 CDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY----------- 93 (133)
T ss_pred HHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC-----------
Confidence 4444333223455666677778888899999999999999999999986555 345665555444311
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Q 041545 185 DKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITEL 221 (554)
Q Consensus 185 ~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~ 221 (554)
....+..-++..++.-...++. .|.+..+-..
T Consensus 94 ---~~~~Vk~kil~li~~W~~~f~~--~~~~~~i~~~ 125 (133)
T smart00288 94 ---PLPLVKKRILELIQEWADAFKN--DPDLSQIVDV 125 (133)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHcC--CCCchHHHHH
Confidence 1122666777777776666655 5666555544
No 198
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=30.29 E-value=1.2e+02 Score=25.89 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHhhc
Q 041545 192 LMASVLITLEAVIDKLGGFLNPYLGDITELLVLC 225 (554)
Q Consensus 192 l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~ 225 (554)
-..+++-.|++++...|+-+-||++++|..+..+
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~ 38 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARH 38 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 3567888899999999999999999999987444
No 199
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=30.07 E-value=2e+02 Score=24.93 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHH
Q 041545 116 VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLI 161 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~i 161 (554)
....++..+.+.|.+.+|.+.--+|..+=.++..+|.++..++-.-
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 5677888888888888999999999999999999999998877554
No 200
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=29.97 E-value=2.9e+02 Score=31.16 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=7.0
Q ss_pred HhHhhHHHHHhhh
Q 041545 277 RLALPPLLKIYSG 289 (554)
Q Consensus 277 r~Llpal~~~~~~ 289 (554)
+.+-+.+...|..
T Consensus 513 ~~v~~~l~~i~~n 525 (574)
T smart00638 513 RKVQEVLLPIYLN 525 (574)
T ss_pred hHHHHHHHHHHcC
Confidence 4455555566643
No 201
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=29.44 E-value=8e+02 Score=27.02 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=73.5
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.++.+|+++|..+..+|..+|..=+..... ...++..++ ++.-|...++. ..+.
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~--------------------~~~~~~l~~---~~~~l~~~l~~---~~~~ 158 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLA--------------------KMEGSDLDY---YFNWLKEQLNN---ITNN 158 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCcc--------------------ccchhHHHH---HHHHHHHHhhc---cCCc
Confidence 355699999999999999999855443221 111222222 44445555553 2356
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISS--RNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRK 167 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~--~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~ 167 (554)
..+.+|+.|+..+.+.=+- +..|. ..++.+.+.++. .+..+.=-+++|+=-+. +-+++.+.+ +.++|.+++
T Consensus 159 ~~~~~~v~~L~~LL~~~~~-R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~l~~ 235 (429)
T cd00256 159 DYVQTAARCLQMLLRVDEY-RFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLT--FNPHAAEVLKRLSLIQDLSD 235 (429)
T ss_pred chHHHHHHHHHHHhCCchH-HHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHh--ccHHHHHhhccccHHHHHHH
Confidence 7888999998777542110 11111 123333344432 23455666666665553 222233344 679999999
Q ss_pred hhhhh
Q 041545 168 KSREI 172 (554)
Q Consensus 168 ~l~~~ 172 (554)
+++.+
T Consensus 236 i~k~s 240 (429)
T cd00256 236 ILKES 240 (429)
T ss_pred HHHhh
Confidence 88874
No 202
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.90 E-value=1.3e+03 Score=29.30 Aligned_cols=113 Identities=11% Similarity=-0.010 Sum_probs=79.4
Q ss_pred CCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHH-HHhcCCChhH
Q 041545 58 SNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDS-VFNLCLASVT-NSISSRNLAL 135 (554)
Q Consensus 58 ~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~-~~l~~~~~~l 135 (554)
+++...++..-..+.+..+=+++..+++.-. .-|...|-.|+..+..+....-.+.- -+.+..+.++ +++.+.+..|
T Consensus 21 ~~~~~n~~~~~~~~~~~~~dsel~~I~kkL~-KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~V 99 (1312)
T KOG0803|consen 21 VSASINSASSNPDPFVLELDSELDIIVKKLL-KRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTV 99 (1312)
T ss_pred ccccccccccCCChHHhccCHHHHHHHHHHh-ccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHH
Confidence 3344444444455555555556666665432 34667899999999999987765411 1233344444 5667789999
Q ss_pred HHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhh
Q 041545 136 ASSCLRTTGALVNVLGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 136 ~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~ 171 (554)
|..+.-.+..+...++-++.|||-.+||..+-.-.+
T Consensus 100 R~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d 135 (1312)
T KOG0803|consen 100 RLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFD 135 (1312)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheecc
Confidence 999999999999999999999999999998864433
No 203
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=28.76 E-value=6.1e+02 Score=25.48 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHH----HHHHHHHHhcCC-Ch---hHH---
Q 041545 69 AFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNL----CLASVTNSISSR-NL---ALA--- 136 (554)
Q Consensus 69 ~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~----~L~~v~~~l~~~-~~---~l~--- 136 (554)
+.+.+..+...+..++-... -.--=..+..++..+|+++-.. ++.+.. -+...++.+.+. .. ..|
T Consensus 90 s~~~i~~ig~~l~~~L~~~r---HrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSA 166 (255)
T PF10350_consen 90 SPDQIEKIGELLIEQLLEIR---HRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSA 166 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccC
Confidence 34455555555555554221 1113456678888888888743 344433 344445555443 11 233
Q ss_pred HHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH--Hhccccccc
Q 041545 137 SSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVID--KLGGFLNPY 214 (554)
Q Consensus 137 ~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~--~l~~FlsPY 214 (554)
|--+++.+-+...-+..- +.|+..|..++++.+..... .++.. .+.-+.=++..|-.++. .++.-+.||
T Consensus 167 GLP~~i~aiL~ae~~~~~-~ll~~~~~~Ll~ia~~~~~~-------~~~~~-~d~~qVHAlNiLr~if~ds~L~~~~~~y 237 (255)
T PF10350_consen 167 GLPFLILAILSAEPSNSR-PLLHRTMKSLLEIAKSPSTQ-------HEDEK-SDLPQVHALNILRAIFRDSKLSEDVSPY 237 (255)
T ss_pred cHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHhcCCccc-------ccccc-cchHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 333555555555444434 99999999999988763210 00111 12345556666666665 566777899
Q ss_pred HHHHHHHH
Q 041545 215 LGDITELL 222 (554)
Q Consensus 215 L~~il~~l 222 (554)
+++.+...
T Consensus 238 i~~~l~la 245 (255)
T PF10350_consen 238 IEDALILA 245 (255)
T ss_pred HHHHHHHH
Confidence 99998764
No 204
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=28.65 E-value=1.1e+03 Score=28.17 Aligned_cols=167 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHH
Q 041545 26 TCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEV 105 (554)
Q Consensus 26 vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~ 105 (554)
+|...++-+=..+.|.+ .+.|..-...+..-=. .+-...+|..|..++..
T Consensus 495 vr~ail~~ip~la~q~~---------------------------~~~~~~~~~~l~~~~l---~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLG---------------------------VEFFDEKLAELLRTWL---PDHVYSIREAAARNLPA 544 (759)
T ss_pred HHHHHHHHHHHHHHhhh---------------------------hHHhhHHHHHHHHhhh---hhhHHHHHHHHHHHhHH
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh-hchhhHHHHHHHHhhhhhhhhhhhhccccc
Q 041545 106 LANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA-LAELPLIMENVRKKSREISTYVDVQNESNE 184 (554)
Q Consensus 106 lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~-iP~LP~imP~ll~~l~~~~~~~~~~~~~~~ 184 (554)
++..|| ..=.-....+.......+++.-.|-..+.|+.+++.++|..+ .-+|=.++-.+..
T Consensus 545 l~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~----------------- 606 (759)
T KOG0211|consen 545 LVETFG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVK----------------- 606 (759)
T ss_pred HHHHhC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhcc-----------------
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHH
Q 041545 185 DKTQRESLMASVLITLEAVIDKLGGFLN-PYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLT 248 (554)
Q Consensus 185 ~~d~~~~l~~s~lsaL~~lv~~l~~Fls-PYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la 248 (554)
|....+-..+.-.+..+...+-.-.- -++-+++..+...+.. +.+.++.--.+.+.
T Consensus 607 --D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~------dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 607 --DPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQEL------DVRYRAILAFGSIE 663 (759)
T ss_pred --CCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCccc------chhHHHHHHHHHHH
No 205
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=27.45 E-value=2.2e+02 Score=26.13 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhh--HHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHH
Q 041545 117 FNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELP--LIMENVRKKSREISTYVDVQNESNEDKTQRESLMA 194 (554)
Q Consensus 117 ~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP--~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~ 194 (554)
-..++..+...+++.++.+.--|+..+-+++..||.+|-..+- .++..+++.+... +. ....+..+..
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k-~~---------~~~~~~~Vk~ 105 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPK-YL---------GSRTSEKVKT 105 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccc-cC---------CCCCCHHHHH
Confidence 3455556666677777888888888889999999988754442 3444444444210 00 0012344566
Q ss_pred HHHHHHHHHHHHhc
Q 041545 195 SVLITLEAVIDKLG 208 (554)
Q Consensus 195 s~lsaL~~lv~~l~ 208 (554)
-++..+..--+.++
T Consensus 106 kil~li~~W~~~f~ 119 (139)
T cd03567 106 KIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666665555554
No 206
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=26.96 E-value=66 Score=26.30 Aligned_cols=32 Identities=13% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHH
Q 041545 75 KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANR 109 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~ 109 (554)
.+++.+..+.+ ..+-..+|+||..+|.++|+.
T Consensus 28 ~iv~~iv~~a~---~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 28 DIVEDIVKIAE---NSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred CHHHHHHHHHH---hCCccchHHHHHHHHHHHhCC
Confidence 37777777777 677888999999999999873
No 207
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.67 E-value=5.2e+02 Score=23.92 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=78.0
Q ss_pred HHHHHHHHhhccCCCC--------ccHhHHHHHHHHHHHHHHHhCCC---Cc---hHHHHHH-----HHHHHhcCCChhH
Q 041545 75 KMCSEVVLLVDNSTGE--------SNISLKLTAVSTLEVLANRFASY---DS---VFNLCLA-----SVTNSISSRNLAL 135 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~--------~~~~lrq~Al~~L~~lA~~~g~~---~~---~~~~~L~-----~v~~~l~~~~~~l 135 (554)
.++..|..++....+. .+..-|.-++..+..+-+..|.. ++ .|..++. .+.+.+.+++..+
T Consensus 10 ~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i 89 (168)
T PF12783_consen 10 LVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPI 89 (168)
T ss_pred HHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4556666666322111 14457889999999998888854 22 4554443 2334444566999
Q ss_pred HHHHHHHHHHHHHHhchhhhchhhHHHHHHHH-hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 136 ASSCLRTTGALVNVLGLKALAELPLIMENVRK-KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 136 ~~sallcl~~l~~vLg~~~iP~LP~imP~ll~-~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
...++-.+..+...++.+.-..+..+++.++. .++... +.-....-++.++..+++
T Consensus 90 ~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~--------------~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 90 FSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDN--------------SSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------------CcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888 443311 011244557777777775
No 208
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.47 E-value=4.7e+02 Score=23.41 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhH--HHHHHHHhhhhhhhhhhhhcccccchhhHHHHH
Q 041545 116 VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPL--IMENVRKKSREISTYVDVQNESNEDKTQRESLM 193 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~--imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~ 193 (554)
.-..++..+.+.|+..++.++-.|+..+-.++..+|.+|-..+-. ++-.+++.+... ...+..+.
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-------------~~~~~~Vk 100 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-------------PKYDPKVR 100 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-------------CCCCHHHH
Confidence 455566777777878889999999999999999999988655533 444455544321 01244577
Q ss_pred HHHHHHHHHHHHHhccc--ccccHHHHHH
Q 041545 194 ASVLITLEAVIDKLGGF--LNPYLGDITE 220 (554)
Q Consensus 194 ~s~lsaL~~lv~~l~~F--lsPYL~~il~ 220 (554)
.-++..+...-..++.. =-|++.++-.
T Consensus 101 ~kil~ll~~W~~~f~~~~~~~~~~~~~y~ 129 (133)
T cd03561 101 EKALELILAWSESFGGHSEDLPGIEDAYK 129 (133)
T ss_pred HHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 77778887777777653 2255554443
No 209
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.31 E-value=3.6e+02 Score=30.84 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=61.4
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSIS-SRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSR 170 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~ 170 (554)
+..+|.+|+-+|+.+|-+ ++. .+..+++.++ +.+.-||..+-.++|-.|..-|.+. ++.+|.
T Consensus 565 nDDVrRAAViAlGfvc~~----D~~---~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~----------a~diL~ 627 (926)
T COG5116 565 NDDVRRAAVIALGFVCCD----DRD---LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV----------ATDILE 627 (926)
T ss_pred chHHHHHHHHheeeeEec----Ccc---hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH----------HHHHHH
Confidence 445666666666555422 121 2233334333 2456666666666777776666653 122222
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 171 EISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
.. ..|.++.+.++++.+++-+.-..-.-+.|.+..|...+
T Consensus 628 ~L------------~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f 667 (926)
T COG5116 628 AL------------MYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKF 667 (926)
T ss_pred HH------------hhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHH
Confidence 10 12346778899999998888777777889999999886
No 210
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.55 E-value=5e+02 Score=23.42 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=50.5
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHHhhhh
Q 041545 105 VLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRKKSRE 171 (554)
Q Consensus 105 ~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~~l~~ 171 (554)
.||.........-.+++..+.+.|.+.++.+.-.|+..+-.++..+|+++-..+ ..++..+.+.+..
T Consensus 28 ~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~ 96 (140)
T PF00790_consen 28 EICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS 96 (140)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc
Confidence 355555554335667777788888889999999999999999999999997776 5566666665554
No 211
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=25.49 E-value=4.3e+02 Score=30.40 Aligned_cols=94 Identities=6% Similarity=-0.066 Sum_probs=62.7
Q ss_pred hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHH
Q 041545 19 LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLT 98 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~ 98 (554)
+..++..||.+++++|.-=+ +.+.+.+...|..++..|..=+= + -+..+|..
T Consensus 100 ~eskdk~VR~r~lqila~~~------------------------d~v~eIDe~l~N~L~ekl~~R~~---D-RE~~VR~e 151 (885)
T COG5218 100 TESKDKKVRKRSLQILALLS------------------------DVVREIDEVLANGLLEKLSERLF---D-REKAVRRE 151 (885)
T ss_pred ccCcchhHHHHHHHHHHHHH------------------------HhcchHHHHHHHHHHHHHHHHHh---c-chHHHHHH
Confidence 56788999999999998332 24667778888888888877664 2 24468888
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCChhHHHHHHHHH
Q 041545 99 AVSTLEVLANRFASYDSVFNLCLASVTNSIS-SRNLALASSCLRTT 143 (554)
Q Consensus 99 Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~-~~~~~l~~sallcl 143 (554)
|+.||..+-+.-|.+....+ ......++ .++..||.++++-+
T Consensus 152 Av~~L~~~Qe~~~neen~~~---n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 152 AVKVLCYYQEMELNEENRIV---NLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHhccCChHHHHH---HHHHHHHhcCcHHHHHHHHHHHe
Confidence 88888877765554311222 23334444 35678888887744
No 212
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.91 E-value=2.1e+02 Score=30.47 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=50.1
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhchhhhchhh
Q 041545 89 GESNISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSIS-SRNLALASSCLRTTGALVNVLGLKALAELP 159 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vLg~~~iP~LP 159 (554)
++.+.++|..|+..|++.+.+-++-...+. ..+..+...++ +++..++..++.+++++++...+..--|++
T Consensus 134 ~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~ 207 (342)
T KOG2160|consen 134 ENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK 207 (342)
T ss_pred cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 366888999999999999998875311111 12334444444 356677899999999999998887666654
No 213
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.17 E-value=9.8e+02 Score=26.31 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHh------cCCChhHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLAN-RFASYDSVFNLCLASVTNSI------SSRNLALASSCLRT 142 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~-~~g~~~~~~~~~L~~v~~~l------~~~~~~l~~sallc 142 (554)
.+.|..++..|..++... ++.+.+-.++.-|++ ..| +.. +..+.+.+ ..++.++.-.|+-+
T Consensus 212 ~~sl~~~i~vLCsi~~~~------~l~~~~w~~m~nL~~S~~g--~~~----i~~L~~iL~~~~~~~~~~~~~lRGAv~~ 279 (464)
T PF11864_consen 212 SESLSPCIEVLCSIVNSV------SLCKPSWRTMRNLLKSHLG--HSA----IRTLCDILRSPDPQNKRDINVLRGAVFF 279 (464)
T ss_pred hHHHHHHHHHHhhHhccc------ccchhHHHHHHHHHcCccH--HHH----HHHHHHHHcccCccccccHHHHhhHHHH
Confidence 445555666666665532 577777776666664 222 112 22333333 12466777788999
Q ss_pred HHHHHHHhchhhhchhhH----HHHHHHHhhh
Q 041545 143 TGALVNVLGLKALAELPL----IMENVRKKSR 170 (554)
Q Consensus 143 l~~l~~vLg~~~iP~LP~----imP~ll~~l~ 170 (554)
++.+.-.-|.+-+|.+|. ++|.+...++
T Consensus 280 l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~ 311 (464)
T PF11864_consen 280 LRMLLWGSGEQGYPSLPFSPSSVLPSLLNALK 311 (464)
T ss_pred HHHHHhccccCCcceecccHHHHHHHHHHHHh
Confidence 999998888888888654 5555555444
No 214
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.73 E-value=1.1e+02 Score=20.54 Aligned_cols=28 Identities=11% Similarity=0.136 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 041545 120 CLASVTNSISSRNLALASSCLRTTGALV 147 (554)
Q Consensus 120 ~L~~v~~~l~~~~~~l~~sallcl~~l~ 147 (554)
+++.+++.+++++..++..++-++..|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666677777778999999999988875
No 215
>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [].
Probab=23.38 E-value=9.6e+02 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHHHHHHhcc--hhhccchhhHHHHH
Q 041545 393 SIDRAIVFYSLVNKLAESHR--SLFVPYFKYLLEGC 426 (554)
Q Consensus 393 ~~~R~itfy~l~~~l~e~LK--slftpy~~~ll~~~ 426 (554)
...| |-+++.+++.|| +.-|-||+.++-..
T Consensus 276 ~E~R----Y~ll~aiaNqLRYPN~HT~~Fs~~lL~l 307 (379)
T PF04054_consen 276 PEGR----YYLLSAIANQLRYPNSHTHFFSCVLLNL 307 (379)
T ss_pred HHHH----HHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 4577 999999999999 99999999987554
No 216
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=23.02 E-value=7.7e+02 Score=28.13 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=65.1
Q ss_pred cCccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhc-CCChhHHHHHHHH
Q 041545 65 LDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSIS-SRNLALASSCLRT 142 (554)
Q Consensus 65 ~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~-~~~~~l~~sallc 142 (554)
+|..+.....+++.++-.+++......+.-+.++.=..+.+++.-.+.-+| .+..++-.+...+. .++..++-+.+
T Consensus 424 ~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~-- 501 (559)
T PF14868_consen 424 IDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALL-- 501 (559)
T ss_pred cCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHH--
Confidence 344444455556666666663322233344555555555555555443344 45555555555543 23333443333
Q ss_pred HHHHHHHhchhhhchhhH--HHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 041545 143 TGALVNVLGLKALAELPL--IMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG 209 (554)
Q Consensus 143 l~~l~~vLg~~~iP~LP~--imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~ 209 (554)
.....+|.-++|.-.+ +.|.+-..+..- + .|.+=.++.-++.|++.+.+.+++
T Consensus 502 --~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~L--L----------~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 502 --DFLSSLGKLFIPESDQNPVSPALSELFHML--L----------ADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred --HHHHHhccccCCccccchhhhHHHHHHHHH--h----------cCCcHHHHHHHHHHHHHHhccCCc
Confidence 4444444444444433 666655544431 1 112335777888888888876653
No 217
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=22.86 E-value=1.2e+03 Score=26.80 Aligned_cols=42 Identities=2% Similarity=-0.005 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhccC-----CCCccHhHHHHHHHHHHHHHHHhCCC
Q 041545 72 SFRKMCSEVVLLVDNS-----TGESNISLKLTAVSTLEVLANRFASY 113 (554)
Q Consensus 72 ~f~~l~~~L~~il~~~-----~~~~~~~lrq~Al~~L~~lA~~~g~~ 113 (554)
|-..|+..|...+... +.++|..=.+.|.+-+..|--+|.+.
T Consensus 78 YaAaLVDlLd~cL~hnl~p~g~kded~PHaKIAsDi~SSiFLny~K~ 124 (851)
T KOG3723|consen 78 YAAALVDLLDSCLEHNLRPFGKKDEDTPHAKIASDIMSSIFLNYNKP 124 (851)
T ss_pred HHHHHHHHHHHHHhccCccCCCCCCCCchhhHHHHHHHHHHHhcCCC
Confidence 4445666666665332 23566667888889999888888764
No 218
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=22.82 E-value=2.3e+02 Score=31.23 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh-hHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHH
Q 041545 120 CLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL-PLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLI 198 (554)
Q Consensus 120 ~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L-P~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~ls 198 (554)
.+..+.+.+.+.|..+.-++.+++|..+|. .+..|.+. ..+|..++..+.+.. +.|++-+.+.++++
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~-----------~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEK-----------DVDGNVERQHACLS 383 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhc-----------CCCccchhHHHHHH
Confidence 677778888888999999999999999985 23344443 456777777665522 34556678999999
Q ss_pred HHHHHHH
Q 041545 199 TLEAVID 205 (554)
Q Consensus 199 aL~~lv~ 205 (554)
|+..++-
T Consensus 384 ALRnl~I 390 (604)
T KOG4500|consen 384 ALRNLMI 390 (604)
T ss_pred HHHhccc
Confidence 9977654
No 219
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=22.46 E-value=75 Score=26.59 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=41.3
Q ss_pred hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHH
Q 041545 19 LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLT 98 (554)
Q Consensus 19 l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~ 98 (554)
-++++..||+..|+-+..=++.++. +=.+.| +.+..++.....+++..+...
T Consensus 27 ~~~~~~~vre~il~ci~qil~~~~~-------------~i~SGW---------------~~if~il~~aa~~~~e~lv~~ 78 (86)
T PF09324_consen 27 SNNPSIDVRELILECILQILQSRGE-------------NIKSGW---------------KVIFSILRAAAKDNDESLVRL 78 (86)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhHH-------------HHHhcc---------------HHHHHHHHHHHhCCCccHHHH
Confidence 4667899999999999877766552 224567 455555554444556678888
Q ss_pred HHHHHHHH
Q 041545 99 AVSTLEVL 106 (554)
Q Consensus 99 Al~~L~~l 106 (554)
|..+++.+
T Consensus 79 af~~~~~I 86 (86)
T PF09324_consen 79 AFQIVQLI 86 (86)
T ss_pred HHHHHhhC
Confidence 88888753
No 220
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.45 E-value=5.5e+02 Score=32.78 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=84.9
Q ss_pred cCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCC---CccHhHHH
Q 041545 21 NGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTG---ESNISLKL 97 (554)
Q Consensus 21 ~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~---~~~~~lrq 97 (554)
....-||.++|+-+.+-+..++.- =...-| ...|. .+-++-..+....+ ..+| +.-
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~------------F~~~~W-------e~v~~-~~fpIF~~~~~~~~~~~~~eW-~~t 1243 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDD------------FSKEFW-------EDVFR-ILFPIFDNVKLDEDESEKDEW-LST 1243 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhh------------ccHHHH-------HHHHH-heeecccccCcccchhhhhHH-HHH
Confidence 678999999999999999887631 011112 22333 33333333333211 1122 455
Q ss_pred HHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh-hchhhHHHHHHHHhhhh
Q 041545 98 TAVSTLEVLANRFASY----DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA-LAELPLIMENVRKKSRE 171 (554)
Q Consensus 98 ~Al~~L~~lA~~~g~~----~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~-iP~LP~imP~ll~~l~~ 171 (554)
|...|+..++.-|-.- +..+..++.....|+.+++..+..++.-|+-.++...|.+| -+.--.+.-.+.+.++.
T Consensus 1244 T~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1244 TCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKT 1322 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHh
Confidence 5556666665554322 44566777777889999999999999999999999999998 55666666666666655
No 221
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=21.99 E-value=5e+02 Score=26.66 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=40.3
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSIS-SRNLALASSCLRTTGALVNVL 150 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vL 150 (554)
-++.|..++. +++..+|..|.++|+.+ | ....++..++.+. +++..+|..+..+++.+-..-
T Consensus 75 av~~l~~~l~----d~~~~vr~~a~~aLg~~----~-----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~ 137 (335)
T COG1413 75 AVPLLRELLS----DEDPRVRDAAADALGEL----G-----DPEAVPPLVELLENDENEGVRAAAARALGKLGDER 137 (335)
T ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHcc----C-----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh
Confidence 4667777776 33447888888854432 1 2233455555555 588999999999888775543
No 222
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.62 E-value=1.5e+03 Score=27.43 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=86.8
Q ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHhch---hhhchh--hHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHH
Q 041545 121 LASVTNSISSR-NLALASSCLRTTGALVNVLGL---KALAEL--PLIMENVRKKSREISTYVDVQNESNEDKTQRESLMA 194 (554)
Q Consensus 121 L~~v~~~l~~~-~~~l~~sallcl~~l~~vLg~---~~iP~L--P~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~ 194 (554)
+..++++++.. |+.. .+-++.+||+.+-. ..+.-+ -.++|.++.+++.. .+-.+++
T Consensus 169 ~kkLL~gL~~~~Des~---Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---------------~n~DIMl 230 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQ---QLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---------------HNFDIML 230 (1051)
T ss_pred HHHHHHhccccCChHH---HHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---------------ccHHHHH
Confidence 34445555544 4433 35566777775432 234444 46899999988762 2345788
Q ss_pred HHHHHHHHHHHHhcccccccHH----HHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 041545 195 SVLITLEAVIDKLGGFLNPYLG----DITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLL 270 (554)
Q Consensus 195 s~lsaL~~lv~~l~~FlsPYL~----~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~ 270 (554)
-++-||.-+++.+|.-..--++ +++..=.+.-+|. | ..++.+++| +.|.+.-|..=++. ..+..=..|..
T Consensus 231 ~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi---D-vAEQ~LqAL-E~iSR~H~~AiL~A-G~l~a~LsylD 304 (1051)
T KOG0168|consen 231 LACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI---D-VAEQSLQAL-EKISRRHPKAILQA-GALSAVLSYLD 304 (1051)
T ss_pred HHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh---H-HHHHHHHHH-HHHHhhccHHHHhc-ccHHHHHHHHH
Confidence 8999999999999976542222 2222211122221 1 333445555 44554444111111 00000011111
Q ss_pred HHH-HHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCcccc
Q 041545 271 FIL-HLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGG 319 (554)
Q Consensus 271 ~~~-~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~ 319 (554)
+.. +.-|..|....++...+-.+...-+...+-+|...+...+++.+..
T Consensus 305 FFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies 354 (1051)
T KOG0168|consen 305 FFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIES 354 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHH
Confidence 111 2245555555555555444444444455555666666666654443
No 223
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=4.1e+02 Score=28.04 Aligned_cols=23 Identities=22% Similarity=0.043 Sum_probs=20.2
Q ss_pred hhhHHhhhcCChhHHHHHHHHHH
Q 041545 13 VNLYASLFNGEICTCEQALGLLC 35 (554)
Q Consensus 13 ~~~~~ll~~~~~~vr~kal~ll~ 35 (554)
+.++++|+.+.|.||.-|++-+-
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~ 28 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLL 28 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHh
Confidence 57889999999999999997665
No 224
>PF14961 BROMI: Broad-minded protein
Probab=21.12 E-value=1.1e+03 Score=29.66 Aligned_cols=139 Identities=12% Similarity=0.130 Sum_probs=86.7
Q ss_pred HHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC--Cc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh
Q 041545 77 CSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY--DS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK 153 (554)
Q Consensus 77 ~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~--~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~ 153 (554)
=.+++.+++..+.+...++|+.| +..|++..+++ +. .-..+-..+..+++++|+.+...++-+.+.+-++-...
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eA---lq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEA---LQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHH---HHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 56777788776667777888866 56678887776 22 34444556778899999999999999888877766555
Q ss_pred hhchhhHHHHHHHHhhhhhhhhhhh--hccc-cc--chhhHHHHHHHHHHHHHHHHHHhcc----cccccHHHHHHHH
Q 041545 154 ALAELPLIMENVRKKSREISTYVDV--QNES-NE--DKTQRESLMASVLITLEAVIDKLGG----FLNPYLGDITELL 222 (554)
Q Consensus 154 ~iP~LP~imP~ll~~l~~~~~~~~~--~~~~-~~--~~d~~~~l~~s~lsaL~~lv~~l~~----FlsPYL~~il~~l 222 (554)
+.. .+--.+++.++.- +.+.. ...- .+ ....+-.-+.-.+-.+..+-+.+|. |--+|+++|+...
T Consensus 237 ~tr---EiYtsL~~~l~~~-Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsT 310 (1296)
T PF14961_consen 237 MTR---EIYTSLANHLESY-FLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVEST 310 (1296)
T ss_pred hhH---HHHHHHHHHHHHH-HHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHH
Confidence 432 1222333333220 11100 0000 00 1111234567788888899999998 4459999999764
No 225
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.29 E-value=1e+03 Score=25.12 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=62.6
Q ss_pred CchHHHHHHHHHHHh-----cCCC-----hhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccc
Q 041545 114 DSVFNLCLASVTNSI-----SSRN-----LALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESN 183 (554)
Q Consensus 114 ~~~~~~~L~~v~~~l-----~~~~-----~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~ 183 (554)
+|++-.+||.+.-|+ ++.+ -.+|--+.-.++-+|+.++..--..=|++.-.+++.+-+..
T Consensus 272 dPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~---------- 341 (450)
T COG5095 272 DPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE---------- 341 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc----------
Confidence 788999999887554 3433 34888888888889998888877777888888887665422
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHh-cccccccHHHHHHHH
Q 041545 184 EDKTQRESLMASVLITLEAVIDKL-GGFLNPYLGDITELL 222 (554)
Q Consensus 184 ~~~d~~~~l~~s~lsaL~~lv~~l-~~FlsPYL~~il~~l 222 (554)
...-.+-+++-.+..+-++. ..|+.|.+.--.+.+
T Consensus 342 ----k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv 377 (450)
T COG5095 342 ----KTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLV 377 (450)
T ss_pred ----cccchhhhhhhhhhhhchhheeeeeccchHHHHHHH
Confidence 11123555555555555443 344557766555554
No 226
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=20.21 E-value=2.5e+02 Score=28.89 Aligned_cols=58 Identities=10% Similarity=0.227 Sum_probs=32.2
Q ss_pred HHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 041545 77 CSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGA 145 (554)
Q Consensus 77 ~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~ 145 (554)
+|.|...+.. ..|...+|+-|+.+|+.||. .++++.+.+.++.+++-|++|+..++..
T Consensus 220 i~~L~k~L~d--~~E~pMVRhEaAeALGaIa~---------e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 220 IPSLIKVLLD--ETEHPMVRHEAAEALGAIAD---------EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred hHHHHHHHHh--hhcchHHHHHHHHHHHhhcC---------HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5555555553 34455566666666655542 1244555555555666666666665544
No 227
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=20.11 E-value=86 Score=20.12 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhh
Q 041545 135 LASSCLRTTGALVNVLGLKALAELPLIMENVRKKSR 170 (554)
Q Consensus 135 l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~ 170 (554)
||..+.-++|.+.. |..+|.+++.++
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 35556666665554 666677666554
Done!