Query 041545
Match_columns 554
No_of_seqs 170 out of 275
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 99.7 1.7E-13 5.9E-18 157.8 38.7 423 16-541 262-743 (852)
2 1qgr_A Protein (importin beta 99.6 1.6E-11 5.5E-16 140.3 39.9 445 18-545 267-727 (876)
3 2bpt_A Importin beta-1 subunit 99.5 1.6E-11 5.5E-16 140.0 35.6 303 74-433 368-692 (861)
4 2bpt_A Importin beta-1 subunit 99.5 8.3E-11 2.8E-15 134.1 38.5 364 17-432 273-650 (861)
5 1u6g_C TIP120 protein, CAND1; 99.4 7E-12 2.4E-16 149.9 26.0 368 14-432 179-578 (1230)
6 4fdd_A Transportin-1; heat rep 99.4 2.9E-10 1E-14 130.9 38.5 385 16-510 365-766 (852)
7 1qgr_A Protein (importin beta 99.4 1.9E-10 6.6E-15 131.4 31.2 366 15-432 456-853 (876)
8 1u6g_C TIP120 protein, CAND1; 99.3 2.2E-09 7.5E-14 128.4 33.1 338 14-432 10-385 (1230)
9 1b3u_A Protein (protein phosph 99.2 7.5E-09 2.6E-13 112.4 28.4 158 16-222 170-329 (588)
10 1b3u_A Protein (protein phosph 99.1 2.8E-08 9.5E-13 107.9 28.8 315 15-432 208-530 (588)
11 1ibr_B P95, importin beta-1 su 99.0 1.9E-06 6.5E-11 90.4 36.4 397 14-544 5-441 (462)
12 2x1g_F Cadmus; transport prote 99.0 2.4E-07 8.4E-12 108.0 31.2 335 91-508 476-839 (971)
13 2x19_B Importin-13; nuclear tr 99.0 4.2E-07 1.4E-11 105.7 32.7 277 89-423 459-768 (963)
14 2qk1_A Protein STU2; STU2P, XM 98.7 4.8E-07 1.6E-11 89.7 19.4 200 8-252 14-223 (249)
15 1ibr_B P95, importin beta-1 su 98.7 1.9E-07 6.4E-12 98.2 17.4 185 16-222 265-456 (462)
16 2qk2_A LP04448P; mini spindles 98.7 3.9E-07 1.3E-11 88.9 17.4 190 11-252 16-208 (242)
17 2qk1_A Protein STU2; STU2P, XM 98.7 7.2E-07 2.5E-11 88.4 17.6 197 90-324 27-234 (249)
18 2x1g_F Cadmus; transport prote 98.6 3.8E-06 1.3E-10 98.0 26.3 303 92-432 519-840 (971)
19 4hat_C Exportin-1; heat repeat 98.6 1.4E-06 4.6E-11 102.8 21.9 296 90-432 464-812 (1023)
20 2x19_B Importin-13; nuclear tr 98.5 2.1E-05 7.1E-10 91.4 27.7 303 92-432 502-828 (963)
21 3m1i_C Exportin-1; heat repeat 98.5 2.8E-05 9.6E-10 91.7 27.4 298 90-429 464-805 (1049)
22 1wa5_C Importin alpha RE-expor 98.4 4E-05 1.4E-09 89.5 27.4 285 91-433 470-773 (960)
23 2qk2_A LP04448P; mini spindles 98.4 3.6E-06 1.2E-10 82.0 15.0 110 78-207 18-129 (242)
24 1wa5_C Importin alpha RE-expor 98.3 0.00019 6.5E-09 83.8 29.8 361 16-434 461-871 (960)
25 3ibv_A Exportin-T; karyopherin 98.3 0.00014 4.8E-09 85.4 27.7 346 90-504 454-846 (980)
26 3gjx_A Exportin-1; transport, 98.2 0.00011 3.7E-09 86.8 22.4 305 76-432 478-838 (1073)
27 3m1i_C Exportin-1; heat repeat 98.1 0.0018 6.2E-08 76.2 31.0 306 20-375 354-689 (1049)
28 2vgl_B AP-2 complex subunit be 97.9 0.00069 2.3E-08 74.9 21.6 121 14-171 90-213 (591)
29 4hat_C Exportin-1; heat repeat 97.9 0.0011 3.9E-08 78.0 24.2 345 69-434 489-912 (1023)
30 3gjx_A Exportin-1; transport, 97.8 0.004 1.4E-07 73.5 25.7 339 70-434 561-936 (1073)
31 1w63_A Adapter-related protein 97.7 0.015 5.2E-07 64.5 27.3 322 14-433 111-434 (618)
32 2jdq_A Importin alpha-1 subuni 97.5 0.0082 2.8E-07 62.4 21.4 162 2-207 14-181 (450)
33 4b8j_A Importin subunit alpha- 97.4 0.01 3.5E-07 63.7 21.8 152 14-208 78-235 (528)
34 3ibv_A Exportin-T; karyopherin 97.2 0.022 7.7E-07 66.7 22.7 295 90-418 506-832 (980)
35 2vgl_A Adaptor protein complex 97.2 0.42 1.4E-05 53.0 31.7 116 78-221 77-195 (621)
36 1w63_A Adapter-related protein 97.2 0.063 2.1E-06 59.5 24.5 258 76-406 314-577 (618)
37 2jdq_A Importin alpha-1 subuni 97.1 0.0036 1.2E-07 65.2 12.4 160 14-218 238-410 (450)
38 1xqr_A HSPBP1 protein; armadil 97.0 0.0038 1.3E-07 63.2 12.0 148 14-206 85-239 (296)
39 2db0_A 253AA long hypothetical 97.0 0.049 1.7E-06 51.3 17.4 153 15-222 37-190 (253)
40 4hxt_A De novo protein OR329; 96.9 0.0064 2.2E-07 57.8 11.9 154 15-214 91-250 (252)
41 4db8_A Armadillo-repeat protei 96.9 0.0053 1.8E-07 58.9 10.9 147 14-205 16-167 (252)
42 4db6_A Armadillo repeat protei 96.9 0.005 1.7E-07 57.4 10.3 150 12-206 14-168 (210)
43 2iw3_A Elongation factor 3A; a 96.8 0.13 4.5E-06 59.9 23.9 131 70-222 90-222 (986)
44 2vgl_B AP-2 complex subunit be 96.8 0.032 1.1E-06 61.3 17.5 307 14-405 206-531 (591)
45 4hxt_A De novo protein OR329; 96.7 0.027 9.2E-07 53.3 14.3 147 14-205 6-157 (252)
46 3ltj_A Alpharep-4; protein eng 96.7 0.078 2.7E-06 49.0 17.1 118 13-203 17-134 (201)
47 1wa5_B Importin alpha subunit; 96.6 0.037 1.3E-06 59.6 16.2 149 14-205 219-370 (530)
48 4db8_A Armadillo-repeat protei 96.5 0.013 4.5E-07 56.1 10.8 147 14-205 58-209 (252)
49 4b8j_A Importin subunit alpha- 96.5 0.015 5.1E-07 62.5 12.3 150 14-209 290-447 (528)
50 1wa5_B Importin alpha subunit; 96.5 0.014 4.8E-07 62.9 12.1 151 14-209 303-461 (530)
51 4db6_A Armadillo repeat protei 96.5 0.026 9.1E-07 52.4 12.2 146 14-204 58-208 (210)
52 1oyz_A Hypothetical protein YI 96.4 0.031 1.1E-06 54.6 13.1 22 14-35 27-48 (280)
53 3ltj_A Alpharep-4; protein eng 96.3 0.032 1.1E-06 51.6 11.8 117 14-203 49-165 (201)
54 3ltm_A Alpha-REP4; protein eng 96.2 0.032 1.1E-06 52.1 11.6 117 14-203 23-139 (211)
55 4ffb_C Protein STU2; tubulin f 96.2 0.063 2.1E-06 53.0 14.1 150 18-208 63-215 (278)
56 3ltm_A Alpha-REP4; protein eng 96.1 0.044 1.5E-06 51.1 11.5 117 14-203 54-170 (211)
57 4ffb_C Protein STU2; tubulin f 96.0 0.077 2.6E-06 52.3 13.5 169 7-221 8-187 (278)
58 1oyz_A Hypothetical protein YI 95.9 0.12 4E-06 50.5 14.0 101 76-204 55-156 (280)
59 2iw3_A Elongation factor 3A; a 95.7 0.33 1.1E-05 56.6 18.7 124 75-222 54-180 (986)
60 2of3_A ZYG-9; multifunctional 95.7 0.34 1.2E-05 48.1 16.3 162 10-221 46-215 (266)
61 2vgl_A Adaptor protein complex 95.6 0.18 6.3E-06 55.9 15.6 108 90-221 122-232 (621)
62 1xqr_A HSPBP1 protein; armadil 95.3 0.24 8.1E-06 49.9 14.2 107 14-149 128-239 (296)
63 2z6g_A B-catenin; FULL-length, 95.2 0.73 2.5E-05 52.4 19.6 131 14-171 154-287 (780)
64 1te4_A Conserved protein MTH18 95.2 0.0046 1.6E-07 54.0 0.8 99 15-171 17-115 (131)
65 2z6h_A Catenin beta-1, beta-ca 95.0 0.18 6.1E-06 55.8 13.4 129 14-171 18-151 (644)
66 3a6p_A Exportin-5; exportin-5, 94.8 1.6 5.5E-05 52.1 21.6 175 94-289 501-682 (1204)
67 1jdh_A Beta-catenin; beta-cate 94.7 0.25 8.4E-06 52.3 12.9 128 14-171 21-154 (529)
68 3b2a_A TON_1937, putative unch 94.7 0.52 1.8E-05 45.9 13.7 143 14-205 37-179 (265)
69 3tpo_A Importin subunit alpha- 94.2 0.18 6.3E-06 54.3 10.8 148 14-206 297-450 (529)
70 2of3_A ZYG-9; multifunctional 93.8 0.32 1.1E-05 48.3 10.7 85 76-167 168-255 (266)
71 2z6g_A B-catenin; FULL-length, 93.3 0.23 7.8E-06 56.6 9.8 124 13-171 118-245 (780)
72 3tpo_A Importin subunit alpha- 93.3 0.77 2.6E-05 49.4 13.5 150 14-204 166-321 (529)
73 3ul1_B Importin subunit alpha- 93.1 0.66 2.3E-05 49.7 12.7 151 14-205 147-303 (510)
74 1te4_A Conserved protein MTH18 92.8 0.27 9.2E-06 42.5 7.5 85 14-145 46-130 (131)
75 3now_A UNC-45 protein, SD10334 92.8 0.55 1.9E-05 53.8 11.8 148 14-205 627-782 (810)
76 3a6p_A Exportin-5; exportin-5, 92.2 0.66 2.3E-05 55.5 12.1 80 91-171 544-636 (1204)
77 3ul1_B Importin subunit alpha- 92.1 0.7 2.4E-05 49.5 11.1 148 14-206 278-431 (510)
78 3now_A UNC-45 protein, SD10334 90.7 4.6 0.00016 46.2 16.5 150 14-205 540-694 (810)
79 1jdh_A Beta-catenin; beta-cate 90.5 3.7 0.00013 43.1 14.7 126 14-171 63-196 (529)
80 3nmz_A APC variant protein; pr 89.7 2.7 9.3E-05 44.8 12.8 148 14-204 247-407 (458)
81 4atg_A TAF6; transcription, TF 89.6 1.5 5.2E-05 41.4 9.5 92 70-162 82-177 (196)
82 3nmw_A APC variant protein; AR 89.0 3.4 0.00012 42.3 12.6 148 14-204 131-291 (354)
83 1xm9_A Plakophilin 1; armadill 87.5 2.7 9.1E-05 44.4 10.9 125 14-170 6-137 (457)
84 2z6h_A Catenin beta-1, beta-ca 87.3 4.5 0.00015 44.4 13.0 128 14-171 60-193 (644)
85 3nmw_A APC variant protein; AR 86.1 7.4 0.00025 39.8 13.0 156 15-212 175-341 (354)
86 3tt9_A Plakophilin-2; cell adh 85.6 2.5 8.5E-05 40.9 8.6 130 14-171 56-205 (233)
87 1xm9_A Plakophilin 1; armadill 84.7 4 0.00014 43.0 10.5 127 14-171 48-196 (457)
88 4gmo_A Putative uncharacterize 84.2 3.4 0.00012 46.2 10.1 80 90-171 45-130 (684)
89 3nmz_A APC variant protein; pr 83.9 14 0.0005 39.1 14.4 153 14-208 290-453 (458)
90 1vsy_4 Proteasome activator BL 82.4 73 0.0025 36.2 31.8 344 64-485 327-697 (799)
91 3l6x_A Catenin delta-1; cateni 79.9 7.4 0.00025 42.8 10.5 130 14-171 94-246 (584)
92 3tjz_B Coatomer subunit gamma; 79.6 17 0.00059 37.2 12.6 132 16-205 74-205 (355)
93 3b2a_A TON_1937, putative unch 78.2 18 0.00063 35.2 11.3 105 15-153 80-184 (265)
94 4atg_A TAF6; transcription, TF 77.1 19 0.00064 33.8 11.0 117 92-222 59-180 (196)
95 1w9c_A CRM1 protein, exportin 74.7 39 0.0013 34.1 13.3 144 276-434 71-228 (321)
96 1w9c_A CRM1 protein, exportin 74.1 20 0.00067 36.3 10.9 119 20-167 39-170 (321)
97 2db0_A 253AA long hypothetical 74.0 60 0.0021 30.6 14.7 108 119-252 32-139 (253)
98 3tt9_A Plakophilin-2; cell adh 73.6 17 0.00057 35.0 10.0 93 76-171 9-105 (233)
99 3opb_A SWI5-dependent HO expre 72.6 20 0.00067 40.7 11.5 137 14-171 610-758 (778)
100 3grl_A General vesicular trans 69.7 46 0.0016 36.9 13.4 94 76-171 61-177 (651)
101 1lsh_A Lipovitellin (LV-1N, LV 67.7 14 0.00049 43.4 9.5 112 76-206 392-508 (1056)
102 4gmo_A Putative uncharacterize 66.0 44 0.0015 37.0 12.7 69 15-113 39-110 (684)
103 3l6x_A Catenin delta-1; cateni 65.8 9.9 0.00034 41.7 7.2 128 14-169 52-183 (584)
104 3oc3_A Helicase MOT1, MOT1; re 65.7 58 0.002 35.8 12.7 126 15-171 179-310 (800)
105 3opb_A SWI5-dependent HO expre 65.4 87 0.003 35.5 14.8 133 76-226 607-759 (778)
106 1vsy_5 Proteasome activator BL 62.4 44 0.0015 39.1 12.1 139 77-223 799-944 (997)
107 3tjz_B Coatomer subunit gamma; 61.8 31 0.0011 35.3 9.7 103 8-148 102-205 (355)
108 4ady_A RPN2, 26S proteasome re 60.0 32 0.0011 39.9 10.1 103 91-222 590-693 (963)
109 3oc3_A Helicase MOT1, MOT1; re 53.3 58 0.002 35.9 10.0 55 89-147 273-327 (800)
110 3u0r_A Apoptosis inhibitor 5; 50.5 2.6E+02 0.0089 29.8 17.4 245 15-334 70-323 (507)
111 1dvp_A HRS, hepatocyte growth 47.5 1.5E+02 0.005 27.8 11.2 102 106-222 29-133 (220)
112 4ady_A RPN2, 26S proteasome re 44.9 75 0.0026 36.9 10.0 86 76-169 612-697 (963)
113 1vsy_4 Proteasome activator BL 43.4 4.1E+02 0.014 30.1 23.0 58 95-152 399-459 (799)
114 1juq_A ADP-ribosylation factor 40.4 1.4E+02 0.0048 27.0 9.4 87 15-124 55-143 (171)
115 3o2t_A Symplekin; heat repeat, 38.1 68 0.0023 33.2 7.6 108 23-147 20-128 (386)
116 1mhq_A ADP-ribosylation factor 38.1 1.3E+02 0.0044 26.6 8.6 85 16-123 44-130 (148)
117 1x5b_A Signal transducing adap 36.0 2.4E+02 0.0081 25.2 11.6 86 116-218 49-136 (163)
118 3grl_A General vesicular trans 34.0 2.5E+02 0.0086 31.0 11.6 152 15-206 213-395 (651)
119 3gs3_A Symplekin, LD45768P; he 33.9 1.6E+02 0.0055 28.5 9.2 118 20-155 7-126 (257)
120 3ldz_A STAM-1, signal transduc 32.4 2.5E+02 0.0084 24.3 13.3 88 106-209 29-118 (140)
121 4f52_E Glomulin; cullin-ring E 27.9 3.2E+02 0.011 29.8 11.2 103 18-144 325-427 (596)
122 1elk_A Target of MYB1; superhe 27.3 3.2E+02 0.011 24.1 10.1 81 116-209 50-134 (157)
123 3g2s_A C-terminal fragment of 26.9 3.3E+02 0.011 24.0 10.3 83 15-126 53-143 (149)
124 1x5b_A Signal transducing adap 26.5 3.4E+02 0.012 24.1 10.1 76 16-117 58-133 (163)
125 1dvp_A HRS, hepatocyte growth 25.2 2.7E+02 0.0093 25.9 9.0 74 15-113 47-120 (220)
126 1juq_A ADP-ribosylation factor 25.2 3.7E+02 0.013 24.1 11.4 95 116-222 47-143 (171)
127 3zyq_A Hepatocyte growth facto 23.6 4.5E+02 0.016 24.5 12.4 78 117-209 43-122 (226)
128 1mhq_A ADP-ribosylation factor 21.5 4.1E+02 0.014 23.2 9.9 93 117-221 36-130 (148)
129 3u0r_A Apoptosis inhibitor 5; 20.8 7.8E+02 0.027 26.2 18.3 71 92-171 41-111 (507)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.67 E-value=1.7e-13 Score=157.81 Aligned_cols=423 Identities=14% Similarity=0.177 Sum_probs=278.1
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhc----------
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVD---------- 85 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~---------- 85 (554)
+.++++++..||..|++.+.. +..... .| +.-.++...++|.|...+.
T Consensus 262 ~~~~~~~~~~vr~~a~e~l~~-l~~~~~-----------------~~----~~~~~~~~~l~p~ll~~l~~~e~d~~~~~ 319 (852)
T 4fdd_A 262 LQRTQDQDENVALEACEFWLT-LAEQPI-----------------CK----DVLVRHLPKLIPVLVNGMKYSDIDIILLK 319 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHH-HTTSTT-----------------HH----HHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHccCCcHHHHHHHHHHHHH-Hhcchh-----------------HH----HHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence 457788999999999999874 322110 01 1114566678888877762
Q ss_pred cC--CC--C----ccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhch
Q 041545 86 NS--TG--E----SNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAE 157 (554)
Q Consensus 86 ~~--~~--~----~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~ 157 (554)
.. ++ + .++.+|.+|..+++.++..+|. ..+..+++.+.+.+.+++|.+|..++.++|.+++.++..+.|+
T Consensus 320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~ 397 (852)
T 4fdd_A 320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY 397 (852)
T ss_dssp C------------CCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 11 11 1 3567899999999999999984 5677889999999988999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhhh-------------hhhhhhccccc-------------chhhHHHHHHHHHHHHHHHHHHhcccc
Q 041545 158 LPLIMENVRKKSREIS-------------TYVDVQNESNE-------------DKTQRESLMASVLITLEAVIDKLGGFL 211 (554)
Q Consensus 158 LP~imP~ll~~l~~~~-------------~~~~~~~~~~~-------------~~d~~~~l~~s~lsaL~~lv~~l~~Fl 211 (554)
++.++|.++..+++.. +..+...+... -.+.+..+..+++.++..+++..+.-+
T Consensus 398 l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l 477 (852)
T 4fdd_A 398 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 477 (852)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhh
Confidence 9999999999987632 11111000000 112345788999999999999999999
Q ss_pred cccHHHHHHHHh-hccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhh
Q 041545 212 NPYLGDITELLV-LCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGA 290 (554)
Q Consensus 212 sPYL~~il~~l~-l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~ 290 (554)
.||+++++..+. ....+ .++.....+++| ..+++.++ -.+.. ++|...++|++.+.|..+
T Consensus 478 ~~~l~~ll~~L~~~l~~~---~~~~~~~~~~ai-~~l~~~~~---------~~~~~------~~~~~~l~p~l~~~~~~l 538 (852)
T 4fdd_A 478 VPYLAYILDTLVFAFSKY---QHKNLLILYDAI-GTLADSVG---------HHLNK------PEYIQMLMPPLIQKWNML 538 (852)
T ss_dssp GGGHHHHHHHHHHHHHHC---CHHHHHHHHHHH-HHHHHHHG---------GGGCC------HHHHHHHHHHHHHHHHHS
T ss_pred HhHHHHHHHHHHHHHHHh---ChHHHHHHHHHH-HHHHHHhh---------hhhcc------HHHHHHHHHHHHHHHHhc
Confidence 999999998872 22222 123333344555 55555544 00000 233788999999999874
Q ss_pred hhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhh-------cc--cChhhHHHHHHHHHHHHHHHHH
Q 041545 291 VDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQ-------HR--VSIQDIDIVEKSVISTVISLTM 361 (554)
Q Consensus 291 ~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~-------~~--~~~~~i~~vE~~vi~a~~~lVl 361 (554)
. ++...+..++++++..+..++. .+.++.+.++..++..+.-.-. .+ .+.++. .+-..+++++-.++-
T Consensus 539 ~-d~~~~~~~~~~~l~~i~~~~g~-~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~-~~~~~~l~~l~~l~~ 615 (852)
T 4fdd_A 539 K-DEDKDLFPLLECLSSVATALQS-GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK-DFMIVALDLLSGLAE 615 (852)
T ss_dssp C-TTCTTHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT-HHHHHHHHHHHHHHH
T ss_pred c-cccHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc-hHHHHHHHHHHHHHH
Confidence 4 3444556889999999999887 6677888888887777654210 01 111111 134455666666666
Q ss_pred hhcccchhhHH-----HHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhhcc
Q 041545 362 KLTETMFRPLF-----IRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGV 436 (554)
Q Consensus 362 KLsE~tFrPLf-----~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~~~ 436 (554)
++. ..|+|++ ..++-+...+ + ...-|..+ |.+++.++..+.+-|.||...+++.+.+.|+..+
T Consensus 616 ~l~-~~~~~~~~~~~~~~~l~~~l~~----~----~~~vr~~a-~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~-- 683 (852)
T 4fdd_A 616 GLG-GNIEQLVARSNILTLMYQCMQD----K----MPEVRQSS-FALLGDLTKACFQHVKPCIADFMPILGTNLNPEF-- 683 (852)
T ss_dssp HHG-GGGHHHHHTCCHHHHHHHHTTC----S----SHHHHHHH-HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTS--
T ss_pred HHh-HhHHHHhcCCcHHHHHHHHhCC----C----ChhHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccc--
Confidence 665 6677764 3333333221 1 23466555 8999999999999999999999999998884421
Q ss_pred cccchhhhhhhhhhhhcccccccccchhhhHHHHHHHHHHHHHhhccccccccccchhhHhhhHHHHHHHhhcCCCCCcc
Q 041545 437 NTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLE 516 (554)
Q Consensus 437 ~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~l~~~vl~~L~~~F~~D~~~~~F~~~~rf~~l~~pLv~QL~~~~~~~~~ 516 (554)
.+ .++ ...| .+..+...+.-+-.. | ...++++|+.-|.+..
T Consensus 684 -~~----v~~-----------------~a~~-----alg~i~~~~~~~~~p--~-----~~~il~~L~~~l~~~~----- 724 (852)
T 4fdd_A 684 -IS----VCN-----------------NATW-----AIGEISIQMGIEMQP--Y-----IPMVLHQLVEIINRPN----- 724 (852)
T ss_dssp -HH----HHH-----------------HHHH-----HHHHHHHHHGGGGGG--G-----THHHHHHHHHHHTCSS-----
T ss_pred -hH----HHH-----------------HHHH-----HHHHHHHHhhHhHHH--H-----HHHHHHHHHHHhCCCC-----
Confidence 00 000 1123 233333333222111 3 3688999998886532
Q ss_pred cccCCCchhhhhhhhHHHHHHHHHh
Q 041545 517 EHLNVPTVKEVDDLLVVCIGQMAVT 541 (554)
Q Consensus 517 ~~~~~~~~~~~~~~lvpci~~la~a 541 (554)
....+.+..+-|||+|+..
T Consensus 725 ------~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 725 ------TPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp ------CCHHHHHHHHHHHHHHHHH
T ss_pred ------CCchHHHHHHHHHHHHHHh
Confidence 1245677888888888865
No 2
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.56 E-value=1.6e-11 Score=140.28 Aligned_cols=445 Identities=10% Similarity=0.040 Sum_probs=265.5
Q ss_pred hhhcCChhHHHHHHHHHHHHhcccCCccccccc--cccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCC---Ccc
Q 041545 18 SLFNGEICTCEQALGLLCETVKDLDMAKPKHKR--RRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTG---ESN 92 (554)
Q Consensus 18 ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~---~~~ 92 (554)
.+...+..||..|++.+..=............. ..+..+ .+..+ ....+++..++|.+...+....+ +++
T Consensus 267 ~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~ll~~ll~~l~~~~~d~~~~~ 341 (876)
T 1qgr_A 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP-EHTSK----FYAKGALQYLVPILTQTLTKQDENDDDDD 341 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC-SSCCC----CHHHHHHHHHHHHHHHHTTCCCSSCCTTC
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCc-cchhH----HHHHHHHHHHhHHHHHHhhcccccccccc
Confidence 456778999999998886443321000000000 000000 00111 11134567788888888864322 457
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhch-hhhchhhHHHHHHHHhhhh
Q 041545 93 ISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGL-KALAELPLIMENVRKKSRE 171 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~-~~iP~LP~imP~ll~~l~~ 171 (554)
+..|.+|..+++.++..+|. ..+..+++.+.+.+.+.+|.+|..++.++|.++..+++ .+-||++.++|.++..+++
T Consensus 342 ~~~r~~a~~~l~~l~~~~~~--~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 342 WNPCKAAGVCLMLLATCCED--DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcH--hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 88999999999999999994 46778888888889889999999999999999999984 4679999999999987754
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccc--cccHHHHHHHHhhccCCCCCCChhHH-HHHHHHHHHHH
Q 041545 172 ISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFL--NPYLGDITELLVLCPEYLPGSDPKLK-VKADAVRRLLT 248 (554)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fl--sPYL~~il~~l~l~~~~~~~~~~~~~-s~~~~l~~~la 248 (554)
. ...+..+++.+++.+.+.++..+ .||++.++..+...-. . +..+. ....++ ..++
T Consensus 420 ~----------------~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~--~--~~~v~~~a~~al-~~l~ 478 (876)
T 1qgr_A 420 P----------------SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS--A--EPRVASNVCWAF-SSLA 478 (876)
T ss_dssp S----------------SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT--S--CHHHHHHHHHHH-HHHH
T ss_pred C----------------CHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc--C--CHHHHHHHHHHH-HHHH
Confidence 1 24578889999999999988764 5999999988732211 1 12222 222223 2222
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchH-HHHHHHHHHHHHhcCCCccccchHHHHHH
Q 041545 249 DKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSL-VIAFEILGNIISRMDRSSIGGFHGKIFDQ 327 (554)
Q Consensus 249 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l-~~ll~~L~~~i~~~~~~~i~~~~~~l~~~ 327 (554)
+..+ +. ...+.+-.......+..+...++|.+.+...... .+...+ ...++.+...+..++. ....+...++..
T Consensus 479 ~~~~--~~-~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~-~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~~~l~~~ 553 (876)
T 1qgr_A 479 EAAY--EA-ADVADDQEEPATYCLSSSFELIVQKLLETTDRPD-GHQNNLRSSAYESLMEIVKNSAK-DCYPAVQKTTLV 553 (876)
T ss_dssp HHHH--HT-TSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS-SCSTTHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHH
T ss_pred HHhh--hc-cccccccccccchhhhHhHHHHHHHHHHHHhCcC-cchhhHHHHHHHHHHHHHHHCch-hhHHHHHHHHHH
Confidence 2211 00 0000000000000011125567777777765311 112233 4678999999998887 456677888888
Q ss_pred HHHHhhhhh--hc----ccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHHHHH
Q 041545 328 CLLALDLRR--QH----RVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFY 401 (554)
Q Consensus 328 ~l~aLd~R~--~~----~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy 401 (554)
+++.+..-- +. ..+.+...++-..++.++..++-++....|.|+.-.++.-.......... ...-|.-+ +
T Consensus 554 l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~---~~~v~~~a-~ 629 (876)
T 1qgr_A 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG---SGGVQEDA-L 629 (876)
T ss_dssp HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC--------CCHHHHHH-H
T ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC---CCCccHHH-H
Confidence 887775420 00 01122234455677888888887776456666665555433322211100 01234444 7
Q ss_pred HHHHHHHHhcchhhccchhhHHHHHHHHhhhhhcccccchhhhhhhhhhhhcccccccccchhhhHHHHHHHHHHHHHhh
Q 041545 402 SLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCF 481 (554)
Q Consensus 402 ~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~l~~~vl~~L~~~F 481 (554)
.++..++..++.-|.||+..+++.+...|.+.+ . +..|...+.+|..+.
T Consensus 630 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~----~---------------------------~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYA----E---------------------------YQVCLAAVGLVGDLC 678 (876)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCT----T---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcc----h---------------------------HHHHHHHHHHHHHHH
Confidence 788899999999999999999999988887641 0 112222333333322
Q ss_pred ccccccccccchhhHhhhHHHHHHHhhcCCCCCcccccCCCchhhhhhhhHHHHHHHHHhhCCc
Q 041545 482 LYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVVCIGQMAVTAGTD 545 (554)
Q Consensus 482 ~~D~~~~~F~~~~rf~~l~~pLv~QL~~~~~~~~~~~~~~~~~~~~~~~lvpci~~la~a~~~d 545 (554)
..-.+. | ....+.++++|++.|..... ...+......|+++++.+.+.+
T Consensus 679 ~~~~~~--~--~~~~~~i~~~l~~~l~~~~~-----------~~~~~~~~~~~l~~i~~~~g~~ 727 (876)
T 1qgr_A 679 RALQSN--I--IPFCDEVMQLLLENLGNENV-----------HRSVKPQILSVFGDIALAIGGE 727 (876)
T ss_dssp HHHGGG--G--HHHHHHHHHHHHHHHTCTTS-----------CGGGHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHh--h--hhhHHHHHHHHHHHhCCccc-----------cHHhhHHHHHHHHHHHHHhchh
Confidence 211111 2 12457888888888865310 1245567777888887766654
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.52 E-value=1.6e-11 Score=140.04 Aligned_cols=303 Identities=9% Similarity=0.098 Sum_probs=208.3
Q ss_pred HHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc
Q 041545 74 RKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY--DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLG 151 (554)
Q Consensus 74 ~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg 151 (554)
..+++.+...++ +.++..|.+|+.+++.+++..+++ .+.+..+++.+...+.++++.+|..++.++|.++..++
T Consensus 368 ~~l~~~l~~~l~----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 368 EPVLEFVEQNIT----ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHHHHTT----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHcC----CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 345666666665 346899999999999999766522 34566778888888888899999999999999999999
Q ss_pred hhh--hchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc----ccccccHHHHHHHHhh-
Q 041545 152 LKA--LAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLG----GFLNPYLGDITELLVL- 224 (554)
Q Consensus 152 ~~~--iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~----~FlsPYL~~il~~l~l- 224 (554)
.++ -++++.++|.+++.+++ +..+..+++.++..+++.++ ..+.||+++++..+..
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~-----------------~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~ 506 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQD-----------------HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGA 506 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTS-----------------CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhcc-----------------ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 876 67999999999986643 13477889999999999886 7788999999987622
Q ss_pred ccCCCCCCChh-HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhh-----------
Q 041545 225 CPEYLPGSDPK-LKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVD----------- 292 (554)
Q Consensus 225 ~~~~~~~~~~~-~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~----------- 292 (554)
.... +.+.. +...+.++ ..+++..+ .... .+...++|.+.+.|.....
T Consensus 507 l~~~--d~~~~vr~~a~~al-~~l~~~~~-------------~~~~----~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 507 ANRI--DNEFNARASAFSAL-TTMVEYAT-------------DTVA----ETSASISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp HTCS--CCGGGHHHHHHHHH-HHHHHHCC-------------GGGH----HHHHHHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred HhCc--CcchHHHHHHHHHH-HHHHHHcc-------------hhhH----HHHHHHHHHHHHHHHHHHhhhcccCChhhH
Confidence 2211 11122 22333344 44444444 1111 2266688888888875310
Q ss_pred cCcch-HHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhH
Q 041545 293 AGDSS-LVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPL 371 (554)
Q Consensus 293 ~~~~~-l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPL 371 (554)
+.... ...+++.|...+..++. .+..+.+.++..++..++.... + .+-..+..++..++ +-....|.|+
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~------~--~v~~~~~~~l~~l~-~~~~~~~~~~ 636 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDS------A--FIEDDVFYAISALA-ASLGKGFEKY 636 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTG------G--GTHHHHHHHHHHHH-HHHGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCC------C--cHHHHHHHHHHHHH-HHHhhhHHHH
Confidence 00111 24678899999999887 5678899999999998865421 0 12233444443333 3334568888
Q ss_pred HHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhh
Q 041545 372 FIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDA 433 (554)
Q Consensus 372 f~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~ 433 (554)
+.+++..-.....+ + ...-|..+ ++++..+...++.-|.||...+++.+.+.|.+.
T Consensus 637 l~~i~~~l~~~l~~-~----~~~vr~~a-~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 637 LETFSPYLLKALNQ-V----DSPVSITA-VGFIADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp HHHHHHHHHHHHHC-T----TSHHHHHH-HHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcc-c----cHHHHHHH-HHHHHHHHHHhchhccchHHHHHHHHHHHhCCc
Confidence 77766655543321 1 23466555 788999999999999999999999988888763
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.50 E-value=8.3e-11 Score=134.12 Aligned_cols=364 Identities=9% Similarity=0.076 Sum_probs=227.0
Q ss_pred HhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCcccccc-CccchHHHHHHHHHHHHhhccCCC---Ccc
Q 041545 17 ASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHL-DDSAFESFRKMCSEVVLLVDNSTG---ESN 92 (554)
Q Consensus 17 ~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~l~~~L~~il~~~~~---~~~ 92 (554)
..+...+..||..|++.+..=...........+ .- ..|... .....+++..++|.|...+...++ +++
T Consensus 273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~ 344 (861)
T 2bpt_A 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELA---QF-----PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDD 344 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH---HC-----TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCC
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhh---hc-----cCCchhhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 467788899999999998754333210000000 00 001000 001145667788888888864322 345
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc-hhhhchhhHHHHHHHHhhhh
Q 041545 93 ISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLG-LKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg-~~~iP~LP~imP~ll~~l~~ 171 (554)
+.+|.+|..+++.++..+|. ..+..+++.+.+.+++.+|.+|..++.++|.+++.++ ..+.|+++.++|.++..+++
T Consensus 345 ~~~r~~a~~~L~~l~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d 422 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCGN--HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND 422 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC
T ss_pred CcHHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 78999999999999999993 5677888888899988899999999999999999887 66789999999999987654
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccc--cccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHh
Q 041545 172 ISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFL--NPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTD 249 (554)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fl--sPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~ 249 (554)
. +..+..+++-+++.+.+.++..+ .+|+++++..+...-. .. ...+.....++ ..+.+
T Consensus 423 ~----------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~--~~-~~v~~~a~~al-~~l~~ 482 (861)
T 2bpt_A 423 Q----------------SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ--DH-PKVATNCSWTI-INLVE 482 (861)
T ss_dssp S----------------CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT--SC-HHHHHHHHHHH-HHHHH
T ss_pred C----------------cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhc--cC-hHHHHHHHHHH-HHHHH
Confidence 1 23466778889999999888655 5789998887632211 11 11222222233 22222
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchH-HHHHHHHHHHHHhcCCCccccchHHHHHHH
Q 041545 250 KIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSL-VIAFEILGNIISRMDRSSIGGFHGKIFDQC 328 (554)
Q Consensus 250 ~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l-~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~ 328 (554)
..+ . .. ...+..+...++|.+.+.... .+....+ ...++.+...+...+. .+..+...+...+
T Consensus 483 ~~~--------~--~~---~~~l~~~~~~il~~L~~~l~~--~d~~~~vr~~a~~al~~l~~~~~~-~~~~~~~~l~~~l 546 (861)
T 2bpt_A 483 QLA--------E--AT---PSPIYNFYPALVDGLIGAANR--IDNEFNARASAFSALTTMVEYATD-TVAETSASISTFV 546 (861)
T ss_dssp HHS--------S--SS---SCGGGGGHHHHHHHHHHHHTC--SCCGGGHHHHHHHHHHHHHHHCCG-GGHHHHHHHHHHH
T ss_pred hcc--------c--cc---chhhHHHHHHHHHHHHHHHhC--cCcchHHHHHHHHHHHHHHHHcch-hhHHHHHHHHHHH
Confidence 221 0 00 000001134455555555532 1222233 3677888888888876 4566777777777
Q ss_pred HHHhhhhhhc--c----cChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHHHHHH
Q 041545 329 LLALDLRRQH--R----VSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYS 402 (554)
Q Consensus 329 l~aLd~R~~~--~----~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~ 402 (554)
++.|...-.. + .+.+....+-..+++++..++-++.+ .|.|+...++.-......... ...-|..+ +.
T Consensus 547 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~----~~~v~~~~-~~ 620 (861)
T 2bpt_A 547 MDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKD----SAFIEDDV-FY 620 (861)
T ss_dssp HHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTT----GGGTHHHH-HH
T ss_pred HHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCC----CCcHHHHH-HH
Confidence 7766532100 0 01122334445778888888877766 677776655543322221111 00235444 67
Q ss_pred HHHHHHHhcchhhccchhhHHHHHHHHhhh
Q 041545 403 LVNKLAESHRSLFVPYFKYLLEGCVQHLTD 432 (554)
Q Consensus 403 l~~~l~e~LKslftpy~~~ll~~~~~~L~~ 432 (554)
.+..++..++.-|.||+..+++.+.+.|++
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 650 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKALNQ 650 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 788999999999999999999999998854
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.45 E-value=7e-12 Score=149.94 Aligned_cols=368 Identities=11% Similarity=0.099 Sum_probs=226.8
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|+..|.++.+.||++|+..|..=....+ ...|..+++.|...+... .+.
T Consensus 179 ~l~~~L~~~~~~vR~~a~~al~~l~~~~~---------------------------~~~~~~~l~~l~~~L~~~---~~~ 228 (1230)
T 1u6g_C 179 CLLPQLTSPRLAVRKRTIIALGHLVMSCG---------------------------NIVFVDLIEHLLSELSKN---DSM 228 (1230)
T ss_dssp HHGGGGGCSSHHHHHHHHHHHHHHTTTC-------------------------------CTTHHHHHHHHHHHT---CSS
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhcC---------------------------HHHHHHHHHHHHHHhccC---Cch
Confidence 35568889999999999999985443322 112445677777777642 224
Q ss_pred hHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhh
Q 041545 94 SLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~ 172 (554)
..|..|+.++..+++.+|+. .|++..+++.+.+.+.++++.+|..++-+++.+++.+|..+-||+|.++|.+++.+...
T Consensus 229 ~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d 308 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 308 (1230)
T ss_dssp CSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCC
Confidence 68899999999999999976 56788899999999988889999999999999999999999999999999999887631
Q ss_pred h-h--h-h--h--------hhccccc-------chhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCC
Q 041545 173 S-T--Y-V--D--------VQNESNE-------DKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPG 231 (554)
Q Consensus 173 ~-~--~-~--~--------~~~~~~~-------~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~ 231 (554)
. + . + + ..+++.+ +.+....+..++..++..++...|..+.||++.++..+... +...
T Consensus 309 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~--l~d~ 386 (1230)
T 1u6g_C 309 PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISR--FKER 386 (1230)
T ss_dssp ------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHST--TSCS
T ss_pred CCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH--cCCC
Confidence 1 1 0 0 0 0000000 01111245778899999999988887889999998876322 2111
Q ss_pred CChhHHHHHHHHHHHHHhhhhHHH-HHHHHhhhhhH--HHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHH
Q 041545 232 SDPKLKVKADAVRRLLTDKIQVIV-LIKMLVIDFDL--KFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNI 308 (554)
Q Consensus 232 ~~~~~~s~~~~l~~~la~~v~~~~-~~~~~~~~~~~--~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~ 308 (554)
....+...+.++...+. .+.... ... ....... ...+.+..+...++|.+.+.+.. .....-...+..|...
T Consensus 387 ~~~Vr~~a~~~l~~l~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~---~~~~vr~~~~~~L~~l 461 (1230)
T 1u6g_C 387 EENVKADVFHAYLSLLK-QTRPVQSWLC-DPDAMEQGETPLTMLQSQVPNIVKALHKQMKE---KSVKTRQCCFNMLTEL 461 (1230)
T ss_dssp SSHHHHHHHHHHHHHHH-HHCCC-------------CCCHHHHHHHHTTHHHHHHHHHTTC---SCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH-Hhcccccccc-CccccccccchHHHHHHHhhHHHHHHHHHhcc---CCHHHHHHHHHHHHHH
Confidence 12233333444422222 111000 000 0000000 00111111133344444444431 2222234677888888
Q ss_pred HHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccc
Q 041545 309 ISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGS 388 (554)
Q Consensus 309 i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~ 388 (554)
+...+ ..+..+.+.++..++..|.-... ...+-..+..++..++-.+....|.|++..++.--.....+.
T Consensus 462 ~~~~~-~~l~~~l~~ll~~l~~~L~d~~~-------~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~-- 531 (1230)
T 1u6g_C 462 VNVLP-GALTQHIPVLVPGIIFSLNDKSS-------SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP-- 531 (1230)
T ss_dssp HHHST-TTTGGGHHHHHHHHHHHTTCSSS-------CHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS--
T ss_pred HHHch-hhhHHHHHHHHHHHHHHHcCCCC-------cchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc--
Confidence 88854 45678999999999998875421 112334455666666655666668777655544332222111
Q ss_pred cccccchhHHHHHHHHHHHHHhcch-------hhccchhhHHHHHHHHhhh
Q 041545 389 MKSKSIDRAIVFYSLVNKLAESHRS-------LFVPYFKYLLEGCVQHLTD 432 (554)
Q Consensus 389 ~~~~~~~R~itfy~l~~~l~e~LKs-------lftpy~~~ll~~~~~~L~~ 432 (554)
...-|..+ ++.+..+++.++. -+.||+..+++.+...|..
T Consensus 532 ---~~~v~~~a-l~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 578 (1230)
T 1u6g_C 532 ---FYKITSEA-LLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578 (1230)
T ss_dssp ---SHHHHHHH-HHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred ---chHHHHHH-HHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc
Confidence 12234445 6778888888876 8899999999999998854
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.45 E-value=2.9e-10 Score=130.90 Aligned_cols=385 Identities=12% Similarity=0.124 Sum_probs=243.6
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhH
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISL 95 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~l 95 (554)
..+|++++..+|+-|+..|..=....+ +.-.+++..++|.|...++ +++..+
T Consensus 365 ~~~l~~~~~~~R~aa~~alg~i~~~~~------------------------~~~~~~l~~~l~~l~~~l~----d~~~~V 416 (852)
T 4fdd_A 365 KELLFHHEWVVKESGILVLGAIAEGCM------------------------QGMIPYLPELIPHLIQCLS----DKKALV 416 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHTTTTTH------------------------HHHGGGHHHHHHHHHHHTT----CSSHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcch------------------------HHHHHHHHHHHHHHHHHcC----CCCHHH
Confidence 346778888899888888873222111 1113567778888888886 347789
Q ss_pred HHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhh
Q 041545 96 KLTAVSTLEVLANRFASY--DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIS 173 (554)
Q Consensus 96 rq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~ 173 (554)
|.+|..+++.+++.++.+ .+.+..+++.+.+.+.+.++.++..+..+++.+++.+|..+.||+|.++|.++..+++.+
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC
Confidence 999999999999988764 457889999999999888999999999999999999999999999999999999887521
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHhhc-cCCCCCCChhHHHHHHHHHHHHHhh
Q 041545 174 TYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN--PYLGDITELLVLC-PEYLPGSDPKLKVKADAVRRLLTDK 250 (554)
Q Consensus 174 ~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls--PYL~~il~~l~l~-~~~~~~~~~~~~s~~~~l~~~la~~ 250 (554)
......++.+++.+++..+..+. +|++.++..+... .... +.++.+...+.++ ..+++.
T Consensus 497 ----------------~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~-d~~~~~~~~~~~l-~~i~~~ 558 (852)
T 4fdd_A 497 ----------------HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK-DEDKDLFPLLECL-SSVATA 558 (852)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSC-TTCTTHHHHHHHH-HHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH-HHHHHH
Confidence 11233467778888888887665 5888888765211 1111 1123333333344 444444
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhh---h------hhc-CcchHHHHHHHHHHHHHhcCCCccccc
Q 041545 251 IQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSG---A------VDA-GDSSLVIAFEILGNIISRMDRSSIGGF 320 (554)
Q Consensus 251 v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~---~------~~~-~~~~l~~ll~~L~~~i~~~~~~~i~~~ 320 (554)
+. ..+.+.+..+...++..+...+.. . .+. +.......++.++..+...|. .+..+
T Consensus 559 ~g-------------~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~-~~~~~ 624 (852)
T 4fdd_A 559 LQ-------------SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG-NIEQL 624 (852)
T ss_dssp HG-------------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG-GGHHH
T ss_pred Hh-------------HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH-hHHHH
Confidence 44 122222111122222222222211 0 011 222344667888888888875 44555
Q ss_pred h--HHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHH
Q 041545 321 H--GKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAI 398 (554)
Q Consensus 321 ~--~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~i 398 (554)
. +.++..++..++-+. ..+-..+..++-+++..+. ..|.|++..+..=-...... + ...-|..
T Consensus 625 ~~~~~~~~~l~~~l~~~~---------~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~-~----~~~v~~~ 689 (852)
T 4fdd_A 625 VARSNILTLMYQCMQDKM---------PEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNP-E----FISVCNN 689 (852)
T ss_dssp HHTCCHHHHHHHHTTCSS---------HHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCT-T----SHHHHHH
T ss_pred hcCCcHHHHHHHHhCCCC---------hhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCc-c----chHHHHH
Confidence 4 577888877764321 2234445555555554444 56777655554332222211 1 2345666
Q ss_pred HHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhhcccccchhhhhhhhhhhhcccccccccchhhhHHHHHHHHHHHH
Q 041545 399 VFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLH 478 (554)
Q Consensus 399 tfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~l~~~vl~~L~ 478 (554)
+ ...+..++..+.+-|.||...++....++|++.+ ... .++.....+|-
T Consensus 690 a-~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~---~~~---------------------------~~~~~a~~~ig 738 (852)
T 4fdd_A 690 A-TWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN---TPK---------------------------TLLENTAITIG 738 (852)
T ss_dssp H-HHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS---CCH---------------------------HHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC---CCc---------------------------hHHHHHHHHHH
Confidence 6 5568899999988999999999999999997632 100 12334556666
Q ss_pred HhhccccccccccchhhHhhhHHHHHHHhhcC
Q 041545 479 KCFLYDTASLKFLDSTNFQVLLKPIVSQLAAE 510 (554)
Q Consensus 479 ~~F~~D~~~~~F~~~~rf~~l~~pLv~QL~~~ 510 (554)
+...+..+ ++. .+...+++|+++-|.+.
T Consensus 739 rl~~~~~~---~~~-~~l~~~~~~~~~~l~~~ 766 (852)
T 4fdd_A 739 RLGYVCPQ---EVA-PMLQQFIRPWCTSLRNI 766 (852)
T ss_dssp HHHHHCHH---HHG-GGHHHHHHHHHHHHHTS
T ss_pred HHHHhCHH---HhC-ccHHHHHHHHHHHhccc
Confidence 66555332 332 45788888888888764
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.38 E-value=1.9e-10 Score=131.36 Aligned_cols=366 Identities=11% Similarity=0.095 Sum_probs=232.0
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
|+..|+++ +.||..|...|..=........... -++.. ...+.-.+|+..++|.|..++.... .++..
T Consensus 456 l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~--~~~~~--------~~~~~l~~~~~~il~~L~~~l~~~~-~~~~~ 523 (876)
T 1qgr_A 456 LIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVA--DDQEE--------PATYCLSSSFELIVQKLLETTDRPD-GHQNN 523 (876)
T ss_dssp HHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCT--TSCCC--------CCCCSSTTTHHHHHHHHHHHTTSCS-SCSTT
T ss_pred HHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccc--ccccc--------ccchhhhHhHHHHHHHHHHHHhCcC-cchhh
Confidence 45567665 8899887776653332211000000 00000 0001125788999999999998542 34567
Q ss_pred HHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhc----------C-CC----hhHHHHHHHHHHHHHHHhc-hhhhch
Q 041545 95 LKLTAVSTLEVLANRFASYD-SVFNLCLASVTNSIS----------S-RN----LALASSCLRTTGALVNVLG-LKALAE 157 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~-~~~~~~L~~v~~~l~----------~-~~----~~l~~sallcl~~l~~vLg-~~~iP~ 157 (554)
+|..++.|++.+++..|.+. +.+..+++.+.+.+. + ++ ..++..++-|++.+++.+| ..+.||
T Consensus 524 ~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 603 (876)
T 1qgr_A 524 LRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI 603 (876)
T ss_dssp HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH
Confidence 99999999999999999763 356677777766543 1 22 4567899999999999999 999999
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHH
Q 041545 158 LPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLK 237 (554)
Q Consensus 158 LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~ 237 (554)
+|.+||.++..++... + ...+...++.+++.++..++.-+.||++.++..+...-.. ......+.
T Consensus 604 ~~~l~~~l~~~l~~~~-----------~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vr~ 668 (876)
T 1qgr_A 604 SDVVMASLLRMFQSTA-----------G---SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN-YAEYQVCL 668 (876)
T ss_dssp HHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-CTTHHHHH
T ss_pred HHHHHHHHHHHHHhcc-----------C---CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-cchHHHHH
Confidence 9999999999887521 0 0135677889999999999998999999998776221110 00122333
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCcc
Q 041545 238 VKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSI 317 (554)
Q Consensus 238 s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i 317 (554)
..+.++ ..++..++ ..+.+. ...+++.+.+.+..- +.+.......+.+++..+..+|+. +
T Consensus 669 ~a~~~l-~~l~~~~~-------------~~~~~~----~~~i~~~l~~~l~~~-~~~~~~~~~~~~~l~~i~~~~g~~-~ 728 (876)
T 1qgr_A 669 AAVGLV-GDLCRALQ-------------SNIIPF----CDEVMQLLLENLGNE-NVHRSVKPQILSVFGDIALAIGGE-F 728 (876)
T ss_dssp HHHHHH-HHHHHHHG-------------GGGHHH----HHHHHHHHHHHHTCT-TSCGGGHHHHHHHHHHHHHHHGGG-G
T ss_pred HHHHHH-HHHHHHHH-------------Hhhhhh----HHHHHHHHHHHhCCc-cccHHhhHHHHHHHHHHHHHhchh-H
Confidence 333333 44444443 112222 566777777777530 012233446678888888888774 6
Q ss_pred ccchHHHHHHHHHHhhhhhhcccChhh---HHHHHHHHHHHHHHHHHhhcc---------cchhhHHHHHHhhhhhcccc
Q 041545 318 GGFHGKIFDQCLLALDLRRQHRVSIQD---IDIVEKSVISTVISLTMKLTE---------TMFRPLFIRSIEWAESDVED 385 (554)
Q Consensus 318 ~~~~~~l~~~~l~aLd~R~~~~~~~~~---i~~vE~~vi~a~~~lVlKLsE---------~tFrPLf~kl~~WA~~~~~~ 385 (554)
..+.+.++..+++++..+.. ..+.+. ...+-..+.+++..++-.+.+ ..|+|++-.++.....-..+
T Consensus 729 ~~~l~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 807 (876)
T 1qgr_A 729 KKYLEVVLNTLQQASQAQVD-KSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD 807 (876)
T ss_dssp GGGHHHHHHHHHHHHTCCCC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 77899999999998876532 112211 123444566666666666654 47888877776554321111
Q ss_pred ccccccccchhHHHHHHHHHHHHHhcch-hhccc-hhhHHHHHHH-Hhhh
Q 041545 386 IGSMKSKSIDRAIVFYSLVNKLAESHRS-LFVPY-FKYLLEGCVQ-HLTD 432 (554)
Q Consensus 386 ~~~~~~~~~~R~itfy~l~~~l~e~LKs-lftpy-~~~ll~~~~~-~L~~ 432 (554)
.. ....-|..+ ..++..+.+.+.+ -+.|| ...++.++.+ .|++
T Consensus 808 ~~---~~~~vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~ 853 (876)
T 1qgr_A 808 ED---HTDGVVACA-AGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRS 853 (876)
T ss_dssp SC---CCHHHHHHH-HHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHC
T ss_pred CC---CCHHHHHHH-HHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhc
Confidence 10 013467777 7779999999988 88899 6788888887 7755
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.28 E-value=2.2e-09 Score=128.36 Aligned_cols=338 Identities=13% Similarity=0.089 Sum_probs=219.5
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|++-+.++|+.+|+.|+.-|.+-++.... .. +...+..+++.|...+. +.++
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~--------------------~~---~~~~~~~il~~Ll~~L~----d~~~ 62 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSI--------------------KL---DDDSERKVVKMILKLLE----DKNG 62 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCC--------------------SC---CTTHHHHHHHHHHHHTT----CSSH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHccccc--------------------CC---ChhHHHHHHHHHHHHhc----CCCH
Confidence 356667889999999999988877755321 11 23456677888888776 3578
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh------hhchhhHHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK------ALAELPLIMENVRK 167 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~------~iP~LP~imP~ll~ 167 (554)
..|+.|+.+|..+++.++. +.+..+++.+.+.+.+++..+|..+..+++.++..+++. .-++.|.++|.++.
T Consensus 63 ~vR~~A~~~L~~l~~~~~~--~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~ 140 (1230)
T 1u6g_C 63 EVQNLAVKCLGPLVSKVKE--YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTS 140 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHH
Confidence 8999999999999987764 567788888999998888999999999999999999987 46689999999998
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLL 247 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~l 247 (554)
.+++. .+..+..+++.++..+.+..|..+.||+++++..+... +.......+.....++ ..+
T Consensus 141 ~l~~~---------------~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~--L~~~~~~vR~~a~~al-~~l 202 (1230)
T 1u6g_C 141 AIAKQ---------------EDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ--LTSPRLAVRKRTIIAL-GHL 202 (1230)
T ss_dssp HHSCC---------------SCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGG--GGCSSHHHHHHHHHHH-HHH
T ss_pred HHcCC---------------CchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH--HcCCcHHHHHHHHHHH-HHH
Confidence 76531 12357889999999999999999999999999886222 2111112222233333 444
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 041545 248 TDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQ 327 (554)
Q Consensus 248 a~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~ 327 (554)
+...+ .. . ...++|.+.+.... ..+.......++++.......++ .+..+.+.+..+
T Consensus 203 ~~~~~-------------~~---~----~~~~l~~l~~~L~~--~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~l~~~ 259 (1230)
T 1u6g_C 203 VMSCG-------------NI---V----FVDLIEHLLSELSK--NDSMSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPL 259 (1230)
T ss_dssp TTTC------------------------CTTHHHHHHHHHHH--TCSSCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHH
T ss_pred HHhcC-------------HH---H----HHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHH
Confidence 44443 00 1 22345555555433 11122223446777777777776 677899999999
Q ss_pred HHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccc-----------------------
Q 041545 328 CLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVE----------------------- 384 (554)
Q Consensus 328 ~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~----------------------- 384 (554)
+++++.-. .+ ++-..+..++..++ +.....|+|++-.++.-......
T Consensus 260 ll~~l~d~------~~---~vR~~a~~~l~~l~-~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~ 329 (1230)
T 1u6g_C 260 VVKFCNVD------DD---ELREYCIQAFESFV-RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 329 (1230)
T ss_dssp HHHHHSSC------CT---TTHHHHHHHHHHHH-HCTTCCCHHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHhcCC------CH---HHHHHHHHHHHHHH-HHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccc
Confidence 99988521 11 12334455444443 34455677776665433221110
Q ss_pred cccc----c----cc-ccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhh
Q 041545 385 DIGS----M----KS-KSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTD 432 (554)
Q Consensus 385 ~~~~----~----~~-~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~ 432 (554)
+... . .. ...-|..+ ...+..++......|.||++.+++.....+.+
T Consensus 330 ~~~~~~~~~~~~~~d~~~~vR~~A-~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 385 (1230)
T 1u6g_C 330 DDDQGSDDEYSDDDDMSWKVRRAA-AKCLDAVVSTRHEMLPEFYKTVSPALISRFKE 385 (1230)
T ss_dssp ---------------CTTHHHHHH-HHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC
T ss_pred cchhhcccccccccccCHHHHHHH-HHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC
Confidence 0000 0 00 11226556 67788888877778899999999887666644
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.18 E-value=7.5e-09 Score=112.41 Aligned_cols=158 Identities=11% Similarity=0.075 Sum_probs=114.6
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhH
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISL 95 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~l 95 (554)
..+++.+++.||+.|.+.|..=....+. ..+...++|.|..+++ +++..+
T Consensus 170 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~--------------------------~~~~~~l~~~l~~~~~----d~~~~v 219 (588)
T 1b3u_A 170 RNLCSDDTPMVRRAAASKLGEFAKVLEL--------------------------DNVKSEIIPMFSNLAS----DEQDSV 219 (588)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHTSCH--------------------------HHHHHTHHHHHHHHHT----CSCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhcH--------------------------HhHHHHHHHHHHHHhc----CCcHHH
Confidence 3577888899999998888743322220 2234457777777776 346789
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhh
Q 041545 96 KLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTY 175 (554)
Q Consensus 96 rq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~ 175 (554)
|..|+.++..++..+|.+ .....+++.+.+.+.+++|.+|.++.-++|.++..+|++. +.+.++|.+++.+++.
T Consensus 220 r~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--- 293 (588)
T 1b3u_A 220 RLLAVEACVNIAQLLPQE-DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDC--- 293 (588)
T ss_dssp HTTHHHHHHHHHHHSCHH-HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCS---
T ss_pred HHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCC---
Confidence 999999999999998752 2344567777777888899999999999999999998864 5678888888866531
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHH
Q 041545 176 VDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN--PYLGDITELL 222 (554)
Q Consensus 176 ~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls--PYL~~il~~l 222 (554)
+..+..++..+++.+.+.++.... +|++.++..+
T Consensus 294 -------------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l 329 (588)
T 1b3u_A 294 -------------EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI 329 (588)
T ss_dssp -------------SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred -------------cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence 234677888999999998876422 4455555443
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.11 E-value=2.8e-08 Score=107.92 Aligned_cols=315 Identities=10% Similarity=0.061 Sum_probs=191.4
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
+..+++.++..||+.|++.|..=....+. ......++|.+..+++ ++++.
T Consensus 208 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--------------------------~~~~~~~~~~l~~~~~----d~~~~ 257 (588)
T 1b3u_A 208 FSNLASDEQDSVRLLAVEACVNIAQLLPQ--------------------------EDLEALVMPTLRQAAE----DKSWR 257 (588)
T ss_dssp HHHHHTCSCHHHHTTHHHHHHHHHHHSCH--------------------------HHHHHHTHHHHHHHHT----CSSHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhCCH--------------------------HHHHHHHHHHHHHHcc----CCCHH
Confidence 45678889999999999888743322110 1223346666666665 45788
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhh--chhhHHHHHHHHhhhhh
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKAL--AELPLIMENVRKKSREI 172 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~i--P~LP~imP~ll~~l~~~ 172 (554)
+|..|+.+++.++..+|.+ .....+++...+.++++++.+|..+..+++.++..+|.... +++|.++|.+...+++.
T Consensus 258 vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~ 336 (588)
T 1b3u_A 258 VRYMVADKFTELQKAVGPE-ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA 336 (588)
T ss_dssp HHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhCcc-cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999863 23456777888888888999999999999999999998754 78999999988765431
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccc-cccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhh
Q 041545 173 STYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFL-NPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKI 251 (554)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fl-sPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v 251 (554)
+..+..+++.+++.+.+.+|.-. .|++.+++..+. ... .+..+...+.++ ..+.+.+
T Consensus 337 ----------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l-~d~----~~~Vr~~a~~~l-~~l~~~~ 394 (588)
T 1b3u_A 337 ----------------NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL-KDE----CPEVRLNIISNL-DCVNEVI 394 (588)
T ss_dssp ----------------CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHH-TCS----CHHHHHHHHTTC-HHHHHHS
T ss_pred ----------------CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh-CCC----chHHHHHHHHHH-HHHHHhc
Confidence 23567788888888888777432 355555554432 111 112222222222 2222222
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchH-HHHHHHHHHHHHhcCCCccccchHHHHHHHHH
Q 041545 252 QVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSL-VIAFEILGNIISRMDRSSIGGFHGKIFDQCLL 330 (554)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l-~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~ 330 (554)
+ .+ .+.+.++|.+.+.. .+....+ ...++.+.......++..+ .+.+...++.
T Consensus 395 ~-----------~~--------~~~~~~lp~l~~~~----~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~ 448 (588)
T 1b3u_A 395 G-----------IR--------QLSQSLLPAIVELA----EDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMA 448 (588)
T ss_dssp C-----------HH--------HHHHHHHHHHHHHH----TCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHH
T ss_pred C-----------HH--------HHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHH
Confidence 2 00 01355677766543 2333332 2556777777777776432 3456666666
Q ss_pred HhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhccc----chhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHH
Q 041545 331 ALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTET----MFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNK 406 (554)
Q Consensus 331 aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~----tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~ 406 (554)
.|.-. ...+-..++.++..++-.+.+. .+-|.+.++. .+ + ...-| .+....+..
T Consensus 449 ~l~d~---------~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~----~~----~----~~~~R-~~a~~~l~~ 506 (588)
T 1b3u_A 449 WLVDH---------VYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS----GD----P----NYLHR-MTTLFCINV 506 (588)
T ss_dssp GGGCS---------SHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT----TC----S----CHHHH-HHHHHHHHH
T ss_pred HhcCC---------cHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----hC----C----CHHHH-HHHHHHHHH
Confidence 55321 1234444555555555544432 2334333221 11 1 23455 444788888
Q ss_pred HHHhcchhhccchhhHHHHHHHHhhh
Q 041545 407 LAESHRSLFVPYFKYLLEGCVQHLTD 432 (554)
Q Consensus 407 l~e~LKslftpy~~~ll~~~~~~L~~ 432 (554)
+++.+..- .|...+++.+.+.|++
T Consensus 507 l~~~~~~~--~~~~~~~~~l~~~l~d 530 (588)
T 1b3u_A 507 LSEVCGQD--ITTKHMLPTVLRMAGD 530 (588)
T ss_dssp HHHHHHHH--HHHHHTHHHHHHGGGC
T ss_pred HHHhcCHH--HHHHHHHHHHHhhCCC
Confidence 88887654 3677788777777665
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.00 E-value=1.9e-06 Score=90.44 Aligned_cols=397 Identities=12% Similarity=0.068 Sum_probs=224.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.++.-+.+++..+|++|-+-|++ ++... .+. .+..|..++.. .+.+.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~-~~~~~---------------------------~~~---~~~~L~~il~~--~~~~~ 51 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLER-AAVEN---------------------------LPT---FLVELSRVLAN--PGNSQ 51 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHH-HHHHH---------------------------HHH---HHHHHHHHHHC--TTSCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HHhhC---------------------------hHH---HHHHHHHHHHc--CCCCh
Confidence 45666678999999999999984 33210 222 34555566663 34477
Q ss_pred hHHHHHHHHHHHHHHHh------------CCCCc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhH
Q 041545 94 SLKLTAVSTLEVLANRF------------ASYDS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPL 160 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~------------g~~~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~ 160 (554)
..||.|...|+.+.++. ..-.+ ....+-..+++.+.+++..+ ..+.-|++.+++..+++ ...|.
T Consensus 52 ~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~--~~w~~ 128 (462)
T 1ibr_B 52 VARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV--NQWPE 128 (462)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG--TCCTT
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc--cccHH
Confidence 89999999999886432 21122 23344555677787777788 88888999999887664 36799
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHh-cccccccHHHHHHHHhhccCCCCCCChhHHHH
Q 041545 161 IMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL-GGFLNPYLGDITELLVLCPEYLPGSDPKLKVK 239 (554)
Q Consensus 161 imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l-~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~ 239 (554)
++|.++..+.+.. .+.....+++.++..+++.. |.++.+|++.++..+...-. ... .....|
T Consensus 129 ll~~L~~~l~~~~--------------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~--~~~-~~~~vr 191 (462)
T 1ibr_B 129 LIPQLVANVTNPN--------------STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR--KEE-PSNNVK 191 (462)
T ss_dssp HHHHHHHHHHCTT--------------CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHS--TTC-CCHHHH
T ss_pred HHHHHHHHhccCC--------------CCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhC--CCC-CCHHHH
Confidence 9999998765410 02346788999999999988 78888999999887622211 110 011122
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcch-HHHHHHHHHHHHHhcCCCccc
Q 041545 240 ADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSS-LVIAFEILGNIISRMDRSSIG 318 (554)
Q Consensus 240 ~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~-l~~ll~~L~~~i~~~~~~~i~ 318 (554)
..++ +.+...++... -.++. ..+ ...+++.+.+.. .+.... -...+++|...+...++ .+.
T Consensus 192 ~~a~-~~l~~~~~~~~----~~~~~-~~~-------~~~l~~~l~~~~----~~~~~~vr~~~~~~l~~l~~~~~~-~~~ 253 (462)
T 1ibr_B 192 LAAT-NALLNSLEFTK----ANFDK-ESE-------RHFIMQVVCEAT----QCPDTRVRVAALQNLVKIMSLYYQ-YME 253 (462)
T ss_dssp HHHH-HHHHHHTTTTH----HHHTS-HHH-------HHHHHHHHHHHT----TCSSHHHHHHHHHHHHHHHHHCGG-GCT
T ss_pred HHHH-HHHHHHHHHHH----Hhhhh-hHH-------HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3333 33332222000 00000 001 122455444322 222333 33677888888887654 566
Q ss_pred cchH-HHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhh-------c-------------ccch----hhHHH
Q 041545 319 GFHG-KIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKL-------T-------------ETMF----RPLFI 373 (554)
Q Consensus 319 ~~~~-~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKL-------s-------------E~tF----rPLf~ 373 (554)
.+.+ .++.+++..+.-. .++ +=..+++.+..++-.. + -.-+ ..++-
T Consensus 254 ~~~~~~l~~~~~~~~~~~------~~~---v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 254 TYMGPALFAITIEAMKSD------IDE---VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp TTTTTTHHHHHHHHHHCS------SHH---HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC------chH---HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 7777 8888888766321 111 1112222222222111 0 0112 22333
Q ss_pred HHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhhcccccchhhhhhhhhhhhc
Q 041545 374 RSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAG 453 (554)
Q Consensus 374 kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~~~~~~~~~~~k~~~~~~~~ 453 (554)
.++++-....++..+ .....|..+ ..++..+++.+..- ....+++.+.+.|++.
T Consensus 325 ~l~~~l~~~d~d~~~--~~~~~r~~a-~~~L~~l~~~~~~~---~~~~~~~~l~~~l~~~-------------------- 378 (462)
T 1ibr_B 325 ILTQTLTKQDENDDD--DDWNPCKAA-GVCLMLLATCCEDD---IVPHVLPFIKEHIKNP-------------------- 378 (462)
T ss_dssp HHHHHTTCCCSSCCT--TCCSHHHHH-HHHHHHHHHHTTTT---HHHHHHHHHHHHTTCS--------------------
T ss_pred HHHHHHHhccccccc--ccchHHHHH-HHHHHHHHHhccHH---HHHHHHHHHHHHhcCC--------------------
Confidence 344444322111110 123456555 77788888777642 2233444443333321
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHhhccccccccccchhhHhhhHHHHHHHhhcCCCCCcccccCCCchhhhhhhhHH
Q 041545 454 TIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDSTNFQVLLKPIVSQLAAEPPAGLEEHLNVPTVKEVDDLLVV 533 (554)
Q Consensus 454 ~~~e~~~~~~~~~~~l~~~vl~~L~~~F~~D~~~~~F~~~~rf~~l~~pLv~QL~~~~~~~~~~~~~~~~~~~~~~~lvp 533 (554)
.|..|..++.+|.........+ .+. .....++++|+..|... ..++.....-
T Consensus 379 ------------~~~~r~aal~~l~~l~~~~~~~--~~~-~~l~~~~~~l~~~l~d~-------------~~~Vr~~a~~ 430 (462)
T 1ibr_B 379 ------------DWRYRDAAVMAFGCILEGPEPS--QLK-PLVIQAMPTLIELMKDP-------------SVVVRDTAAW 430 (462)
T ss_dssp ------------SHHHHHHHHHHHHHTSSSSCTT--TTC-TTTTTHHHHHHHGGGCS-------------CHHHHHHHHH
T ss_pred ------------ChHHHHHHHHHHHHHhcCCcHH--HHH-HHHHHHHHHHHHHhcCC-------------CHHHHHHHHH
Confidence 2888888999998887643211 222 34477888899888543 2567888899
Q ss_pred HHHHHHHhhCC
Q 041545 534 CIGQMAVTAGT 544 (554)
Q Consensus 534 ci~~la~a~~~ 544 (554)
||++++...+.
T Consensus 431 ~l~~~~~~~~~ 441 (462)
T 1ibr_B 431 TVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHhccc
Confidence 99999986654
No 12
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.98 E-value=2.4e-07 Score=108.03 Aligned_cols=335 Identities=10% Similarity=0.106 Sum_probs=199.7
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISS--RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRK 167 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~--~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~ 167 (554)
.+|.-|.+|+.+++.+++.+..+ .+.+..+++ ++..+.. .++.|+..++.++|.+++-++.+. .|+|.++|.++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~ 553 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVR 553 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Confidence 68889999999999999988765 346666777 4444442 478999999999999999999765 899999999998
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHh-hccCCCCCCChhHHHHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLV-LCPEYLPGSDPKLKVKADAVRRL 246 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~-l~~~~~~~~~~~~~s~~~~l~~~ 246 (554)
.+. ..+...++.++..+.+..+..+.||+++++..+. ....- .-........+.++ ..
T Consensus 554 ~l~-------------------~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~-~~~~~~~~~~~~ai-~~ 612 (971)
T 2x1g_F 554 GLN-------------------SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG-RMKNSDSVRLMFSI-GK 612 (971)
T ss_dssp HHH-------------------SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST-TSCHHHHHHHHHHH-HH
T ss_pred HhC-------------------hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC-CCChHHHHHHHHHH-HH
Confidence 662 1257888999999999999999999999998872 22220 00112223334444 22
Q ss_pred HHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCc------chHHHHHHHHHHHHHhcCCC-----
Q 041545 247 LTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGD------SSLVIAFEILGNIISRMDRS----- 315 (554)
Q Consensus 247 la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~------~~l~~ll~~L~~~i~~~~~~----- 315 (554)
++..+| .....+. ...+++++.+.|..+..... ..+...+++|+..+..++..
T Consensus 613 i~~~~~------------~~~~~~~----~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~ 676 (971)
T 2x1g_F 613 LMSLLR------------PEEIPKY----LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQA 676 (971)
T ss_dssp HHHTSC------------TTHHHHH----HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHhCC------------HHHHHHH----HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccc
Confidence 222221 1222222 77788899999987654321 34557778888887766542
Q ss_pred -------ccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccc
Q 041545 316 -------SIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGS 388 (554)
Q Consensus 316 -------~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~ 388 (554)
.+..+.+.+..++.++++... .+..-+| .+..++-.++..+. ..|.|++-.+++--....
T Consensus 677 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~------~~~~v~e-~~~~~~~~~~~~~~-~~~~p~l~~~~~~l~~~~----- 743 (971)
T 2x1g_F 677 TDQPIVQPVLLVMQRTMPIFKRIAEMWV------EEIDVLE-AACSAMKHAITNLR-SSFQPMLQDLCLFIVASF----- 743 (971)
T ss_dssp -------CCHHHHHTTHHHHHHHHHHTT------TCHHHHH-HHHHHHHHHHHHHH-C--CTHHHHHHHHHHHHC-----
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhcc------ccHHHHH-HHHHHHHHHHHhhh-hhccccHHHHHHHHHHHH-----
Confidence 344556777788777776421 1112223 33445555555554 357887776665544332
Q ss_pred cccccchhHHHHHHHHHHHHHhcchh------hccchhhHHHHHHHHhhhhhcccccchhhhhhhhhhhhcccccccccc
Q 041545 389 MKSKSIDRAIVFYSLVNKLAESHRSL------FVPYFKYLLEGCVQHLTDAKGVNTANSTRKKKARIQEAGTIKEQNGSL 462 (554)
Q Consensus 389 ~~~~~~~R~itfy~l~~~l~e~LKsl------ftpy~~~ll~~~~~~L~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~ 462 (554)
...+...|..+++.+...++.- +..++..+...+...|.... .. ..
T Consensus 744 ----~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~---~~--------~~------------- 795 (971)
T 2x1g_F 744 ----QTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTP---EQ--------NF------------- 795 (971)
T ss_dssp ----C--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCT---TT--------HH-------------
T ss_pred ----hcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhccc---cc--------CC-------------
Confidence 1234467899999999998872 44444445555555554420 00 00
Q ss_pred hhhhHHHHHHHHHHHHHhhccccccccccchhh-HhhhHHHHHHHhh
Q 041545 463 SINHWQLRALVISSLHKCFLYDTASLKFLDSTN-FQVLLKPIVSQLA 508 (554)
Q Consensus 463 ~~~~~~l~~~vl~~L~~~F~~D~~~~~F~~~~r-f~~l~~pLv~QL~ 508 (554)
.+.-.+++--+..++.+..|..+. |+.+.. ++.+++-.+..|.
T Consensus 796 -~~~pd~~~~~f~ll~~~l~~~p~~--~~~s~~~l~~i~~~~~~~l~ 839 (971)
T 2x1g_F 796 -SNISDTMETFFGCLTQIIKKIPQV--LEDKTLAYDRLVFYAQRGMT 839 (971)
T ss_dssp -HHTHHHHHHHHHHHHHHHHSSGGG--GGCTTSCHHHHHHHHHHHHT
T ss_pred -ccCchHHHHHHHHHHHHHHhCcHH--HcCCcccHHHHHHHHHHHcC
Confidence 001113344555566666666654 665555 6666666665554
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.97 E-value=4.2e-07 Score=105.69 Aligned_cols=277 Identities=17% Similarity=0.154 Sum_probs=172.9
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHH
Q 041545 89 GESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRK 167 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~ 167 (554)
.+.+|..|.+|+.+++.+++.+..+ .+.+..+++.+. .+..+++.++..++.++|.+++-++.+. .|||.++|.++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~vl~~l~~ 536 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHP-VMINSVLPLVLH 536 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHTTTHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Confidence 3568999999999999999988764 345566666332 3444678999999999999999988764 799999999998
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL-VLCPEYLPGSDPKLKVKADAVRRL 246 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l-~l~~~~~~~~~~~~~s~~~~l~~~ 246 (554)
.+++ ..+...++.++..+++..+..+.||+++++..+ .....- .-........+.++ ..
T Consensus 537 ~l~~------------------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~-~~~~~~~~~~~eai-~~ 596 (963)
T 2x19_B 537 ALGN------------------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ-IHKTSQCMWLMQAL-GF 596 (963)
T ss_dssp HTTC------------------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT-CSCHHHHHHHHHHH-HH
T ss_pred HhCC------------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC-CCChHHHHHHHHHH-HH
Confidence 6642 136788999999999999999999999999876 222210 00112333334444 22
Q ss_pred HHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcC--c---chHHHHHHHHHHHHHhcCCCc-----
Q 041545 247 LTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAG--D---SSLVIAFEILGNIISRMDRSS----- 316 (554)
Q Consensus 247 la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~--~---~~l~~ll~~L~~~i~~~~~~~----- 316 (554)
++..+| .....+ +...+++++.+.|+.+...+ + ..+..++++|...+...+...
T Consensus 597 i~~~~~------------~~~~~~----~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~ 660 (963)
T 2x19_B 597 LLSALQ------------VEEILK----NLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDH 660 (963)
T ss_dssp HHTTSC------------HHHHHH----HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---
T ss_pred HHhcCC------------HHHHHH----HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 222222 122223 38889999999998755322 1 234577888888888876421
Q ss_pred ----------------cccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHh---
Q 041545 317 ----------------IGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIE--- 377 (554)
Q Consensus 317 ----------------i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~--- 377 (554)
+......+...++++++.... +....|. +..++-.++.-+. ..|.|++-.+.+
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~v~e~-~~~~l~~~~~~~~-~~~~~~l~~~~~~l~ 732 (963)
T 2x19_B 661 EGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLN------DAQVVEA-VCAIFEKSVKTLL-DDFAPMVPQLCEMLG 732 (963)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHTT------CHHHHHH-HHHHHHHHHHHSS-STTGGGHHHHHHHHH
T ss_pred cccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccC------chHHHHH-HHHHHHHHHHhhc-ccccccHHHHHHHHH
Confidence 223445566666666654321 1122232 3334444443333 345666555444
Q ss_pred hhhhccccccccccccchhHHHHHHHHHHHHH--hcchhhccchhhHH
Q 041545 378 WAESDVEDIGSMKSKSIDRAIVFYSLVNKLAE--SHRSLFVPYFKYLL 423 (554)
Q Consensus 378 WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e--~LKslftpy~~~ll 423 (554)
|... ..|...|..+++.+.. +....+.|+...++
T Consensus 733 ~~~~------------~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l 768 (963)
T 2x19_B 733 RMYS------------TIPQASALDLTRQLVHIFAHEPAHFPPIEALF 768 (963)
T ss_dssp HHHH------------HSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHH
T ss_pred HHHH------------cCCccHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3332 1234568888999988 44444444444333
No 14
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.75 E-value=4.8e-07 Score=89.68 Aligned_cols=200 Identities=9% Similarity=0.161 Sum_probs=148.7
Q ss_pred hhcchhhhHHhhhcCChhHHHHHHHHHHH-HhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhcc
Q 041545 8 LSVAPVNLYASLFNGEICTCEQALGLLCE-TVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDN 86 (554)
Q Consensus 8 ~~~~~~~~~~ll~~~~~~vr~kal~ll~~-kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~ 86 (554)
+...|-++++.+.+++..-|+.|++-|.. =+..... +... ...|..++..|...+.
T Consensus 14 ~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~---------------------i~~~-~~~~~~~~~~L~~~l~- 70 (249)
T 2qk1_A 14 LDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKK---------------------LKST-SQNYSNLLGIYGHIIQ- 70 (249)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCC---------------------BCCT-TCCCHHHHHHHHHHHH-
T ss_pred hhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCc---------------------cccC-cccHHHHHHHHHHHhc-
Confidence 45667788999999999999999999986 4433221 1100 1123456677777774
Q ss_pred CCCCccHhHHHHHHHHHHHHHHHhC-CC-C-chHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhh-chhhHHH
Q 041545 87 STGESNISLKLTAVSTLEVLANRFA-SY-D-SVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKAL-AELPLIM 162 (554)
Q Consensus 87 ~~~~~~~~lrq~Al~~L~~lA~~~g-~~-~-~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~i-P~LP~im 162 (554)
.+.+..+|..|+.|++.||+.++ +. . ++...+++.+++.+++....|+..+..|+-.++..+.+.+. |||+.+|
T Consensus 71 --~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll 148 (249)
T 2qk1_A 71 --KDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDML 148 (249)
T ss_dssp --HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHH
T ss_pred --cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHH
Confidence 35577889999999999999998 66 5 78889999999999988899999999999999999988443 3499999
Q ss_pred HHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc---cccccH-HHHHHHHhhccCCCCCCCh-hHH
Q 041545 163 ENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG---FLNPYL-GDITELLVLCPEYLPGSDP-KLK 237 (554)
Q Consensus 163 P~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~---FlsPYL-~~il~~l~l~~~~~~~~~~-~~~ 237 (554)
+.++..+++. +-.+...++.++..++++.+. -++||+ ++++..+... + .+.++ .+.
T Consensus 149 ~~l~~~l~~k----------------~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~--l-~D~~~~VR~ 209 (249)
T 2qk1_A 149 KDILEHMKHK----------------TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQI--V-NDTQPAIRT 209 (249)
T ss_dssp HHHHHHTTCS----------------SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHH--H-TCSSHHHHH
T ss_pred HHHHHHHcCC----------------ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHH--h-cCCCHHHHH
Confidence 9999977652 235788999999999999884 477899 8888876221 1 12233 344
Q ss_pred HHHHHHHHHHHhhhh
Q 041545 238 VKADAVRRLLTDKIQ 252 (554)
Q Consensus 238 s~~~~l~~~la~~v~ 252 (554)
....++ ..+.+.++
T Consensus 210 aA~~~l-~~i~~~vG 223 (249)
T 2qk1_A 210 IGFESF-AILIKIFG 223 (249)
T ss_dssp HHHHHH-HHHHHHHC
T ss_pred HHHHHH-HHHHHHhC
Confidence 444445 66676776
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.75 E-value=1.9e-07 Score=98.19 Aligned_cols=185 Identities=9% Similarity=0.035 Sum_probs=133.8
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccc-cccCCCCCCccccccCccchHHHHHHHHHHHHhhccCC---CCc
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKR-RRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNST---GES 91 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~---~~~ 91 (554)
+..++..+..||..|++.+..-.........-... ....+...+..+ +...+++..++|.|...+...+ +++
T Consensus 265 ~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~p~l~~~l~~~d~d~~~~ 340 (462)
T 1ibr_B 265 IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK----FYAKGALQYLVPILTQTLTKQDENDDDD 340 (462)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC----CHHHHHHHHHHHHHHHHTTCCCSSCCTT
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH----HHHHHHhhhccHHHHHHHHhcccccccc
Confidence 45678889999999999776433321000000000 000000001122 1124566778888888876432 245
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKKSR 170 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~l~ 170 (554)
++..|..|..+|+.++..+|. ..+..+++.+.+.+++.+|++|..++.++|.+++++.++ +-+++|.++|.++..++
T Consensus 341 ~~~~r~~a~~~L~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~ 418 (462)
T 1ibr_B 341 DWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418 (462)
T ss_dssp CCSHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG
T ss_pred cchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999993 577888999999999999999999999999999988744 56899999999999776
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccc--cccHHHHHHHH
Q 041545 171 EISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFL--NPYLGDITELL 222 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fl--sPYL~~il~~l 222 (554)
+. ...+...++.+++.+.+.++.-+ .||+++++..+
T Consensus 419 d~----------------~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 419 DP----------------SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456 (462)
T ss_dssp CS----------------CHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred CC----------------CHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 41 34688999999999999998765 49999999876
No 16
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.71 E-value=3.9e-07 Score=88.89 Aligned_cols=190 Identities=15% Similarity=0.189 Sum_probs=140.4
Q ss_pred chhhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCC
Q 041545 11 APVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGE 90 (554)
Q Consensus 11 ~~~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~ 90 (554)
.|-++++.+...+...|+.|+.-|..-+...+. +.. ..+.++++.|...+. .+
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~---------------------~~~---~~~~~i~~~L~~~l~---kd 68 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPK---------------------LEN---GEYGALVSALKKVIT---KD 68 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSS---------------------BCC---CCCHHHHHHHHHHHH---HC
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCC---------------------CCC---CCHHHHHHHHHHHhc---cC
Confidence 455799999999999999999999976665331 111 123467777777774 24
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhh
Q 041545 91 SNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKS 169 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l 169 (554)
.+..+|+.|+.|++.+|+.+|+. .++...+++.+.+.+++.+..+|..+.-++..++..++ ++.++|.++..+
T Consensus 69 ~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l 142 (242)
T 2qk2_A 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESL 142 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHH
Confidence 57789999999999999999976 45778899999999999999999999999999988653 578888888866
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHh-cc-cccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHH
Q 041545 170 REISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL-GG-FLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLL 247 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l-~~-FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~l 247 (554)
++. +..+...++..+..++.+. |. ++.+|++.++..+...-. ....+.+.....++ ..+
T Consensus 143 ~~~----------------~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l-~~l 203 (242)
T 2qk2_A 143 SNK----------------NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEAL-GTL 203 (242)
T ss_dssp TCS----------------CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHH-HHH
T ss_pred cCC----------------ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHH-HHH
Confidence 541 2357889999999988887 44 677999999988722211 11122344444455 666
Q ss_pred Hhhhh
Q 041545 248 TDKIQ 252 (554)
Q Consensus 248 a~~v~ 252 (554)
+..++
T Consensus 204 ~~~vg 208 (242)
T 2qk2_A 204 IKLMG 208 (242)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 66666
No 17
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.66 E-value=7.2e-07 Score=88.37 Aligned_cols=197 Identities=9% Similarity=0.111 Sum_probs=135.9
Q ss_pred CccHhHHHHHHHHHHH-HHHHhCCC---CchHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHhc-hhhh-chhhHHH
Q 041545 90 ESNISLKLTAVSTLEV-LANRFASY---DSVFNLCLASVTNSI-SSRNLALASSCLRTTGALVNVLG-LKAL-AELPLIM 162 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~-lA~~~g~~---~~~~~~~L~~v~~~l-~~~~~~l~~sallcl~~l~~vLg-~~~i-P~LP~im 162 (554)
+.+|.-|..|+.+|.. +++..++- ...+..++..+.+.+ ...+..++..++.|+|.|++.++ +++- ||.+.++
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ll 106 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVF 106 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 6699999999999999 88754331 234667788888888 57789999999999999999999 9999 9999999
Q ss_pred HHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHHhhccCCCCCCChhHHHHHH
Q 041545 163 ENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN-PYLGDITELLVLCPEYLPGSDPKLKVKAD 241 (554)
Q Consensus 163 P~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls-PYL~~il~~l~l~~~~~~~~~~~~~s~~~ 241 (554)
|.+++.+++. ...+..++..++..++++++.... ||++.++..+.-. +.. ++-..|..
T Consensus 107 p~ll~~l~dk----------------k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~--l~~---k~~~vk~~ 165 (249)
T 2qk1_A 107 TPLLDRTKEK----------------KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEH--MKH---KTPQIRME 165 (249)
T ss_dssp HHHHHGGGCC----------------CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHH--TTC---SSHHHHHH
T ss_pred HHHHHHHcCC----------------CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHH--HcC---CChHHHHH
Confidence 9999987652 245778888999999999865332 4599988876211 111 12223343
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhh-hHHHHHHHHHHH-HhHhhHHHHHhhhhhhcCcchHH-HHHHHHHHHHHhcCCCccc
Q 041545 242 AVRRLLTDKIQVIVLIKMLVIDF-DLKFLLFILHLV-RLALPPLLKIYSGAVDAGDSSLV-IAFEILGNIISRMDRSSIG 318 (554)
Q Consensus 242 ~l~~~la~~v~~~~~~~~~~~~~-~~~~~~~~~~~~-r~Llpal~~~~~~~~~~~~~~l~-~ll~~L~~~i~~~~~~~i~ 318 (554)
++ .+|+..+. ..+- +..+.+ +. +.++|.+.+.+. +.+..+. .-+++|......+|...+.
T Consensus 166 al-~~l~~~~~--------~~~~~~~~l~~----~l~~~iip~l~~~l~----D~~~~VR~aA~~~l~~i~~~vG~~~~~ 228 (249)
T 2qk1_A 166 CT-QLFNASMK--------EEKDGYSTLQR----YLKDEVVPIVIQIVN----DTQPAIRTIGFESFAILIKIFGMNTFV 228 (249)
T ss_dssp HH-HHHHHHHH--------HCCSCSHHHHH----HHTTTHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHHCSGGGH
T ss_pred HH-HHHHHHHH--------HcCCcchhHHH----HHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 33 45544443 0000 011111 25 778888888774 3333444 6678888888888886666
Q ss_pred cchHHH
Q 041545 319 GFHGKI 324 (554)
Q Consensus 319 ~~~~~l 324 (554)
.+.+.+
T Consensus 229 p~l~~L 234 (249)
T 2qk1_A 229 KTLEHL 234 (249)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 555543
No 18
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.65 E-value=3.8e-06 Score=97.98 Aligned_cols=303 Identities=11% Similarity=0.069 Sum_probs=186.4
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~ 171 (554)
...+|.+|+.+++.+++-++.....+..+++.+..++. ++++..|..++..+|+.++..+.||+|.+|..+.+.+..
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT 595 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 66799999999999999998644478899999999883 789999999999999999999999999999999987765
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc-ccccccHHHHHHHHhh--ccCCCCC--CChhHHHHHHHHHHH
Q 041545 172 ISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLG-GFLNPYLGDITELLVL--CPEYLPG--SDPKLKVKADAVRRL 246 (554)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~-~FlsPYL~~il~~l~l--~~~~~~~--~~~~~~s~~~~l~~~ 246 (554)
.. ........++.+++.++..+| .-..||+..++..+.. ....... .++........+ ..
T Consensus 596 ~~--------------~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l-~~ 660 (971)
T 2x1g_F 596 GR--------------MKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRL-NM 660 (971)
T ss_dssp TT--------------SCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHH-HH
T ss_pred CC--------------CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH-HH
Confidence 21 112456778888888887765 4455666665544311 1001111 111112222222 33
Q ss_pred HHhhhhHHHHHHHHhhhhhHHH-----HHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccch
Q 041545 247 LTDKIQVIVLIKMLVIDFDLKF-----LLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFH 321 (554)
Q Consensus 247 la~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~ 321 (554)
|+.-+. .+...++... ...+..+...++|.+....+.. ..+.......+.+++..+...++ .+.++.
T Consensus 661 L~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~v~e~~~~~~~~~~~~~~~-~~~p~l 732 (971)
T 2x1g_F 661 ISTLFS------SLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW-VEEIDVLEAACSAMKHAITNLRS-SFQPML 732 (971)
T ss_dssp HHHHHH------HHTC-------------CCHHHHHTTHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred HHHHHh------hcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHhhhh-hccccH
Confidence 333222 0000100000 1112223666777666666431 11223355778888888888876 467799
Q ss_pred HHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhccc-----chhhHHHHHHhhhhhccccc-cccccccch
Q 041545 322 GKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTET-----MFRPLFIRSIEWAESDVEDI-GSMKSKSID 395 (554)
Q Consensus 322 ~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~-----tFrPLf~kl~~WA~~~~~~~-~~~~~~~~~ 395 (554)
+.++++++..+.-.+ +..+++.+-.++-++... .+.++|..+..+...-.... +..-....+
T Consensus 733 ~~~~~~l~~~~~~~~------------~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd 800 (971)
T 2x1g_F 733 QDLCLFIVASFQTRC------------CAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISD 800 (971)
T ss_dssp HHHHHHHHHHCC--C------------CHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHH
T ss_pred HHHHHHHHHHHhcCC------------chHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCch
Confidence 999999998775421 134667777777776552 36666666666655322211 000001335
Q ss_pred hHHHHHHHHHHHHHhcchhhc--cc-hhhHHHHHHHHhhh
Q 041545 396 RAIVFYSLVNKLAESHRSLFV--PY-FKYLLEGCVQHLTD 432 (554)
Q Consensus 396 R~itfy~l~~~l~e~LKslft--py-~~~ll~~~~~~L~~ 432 (554)
=.-+||+++.++..+.=..|. |. +..+++-+...|+-
T Consensus 801 ~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~ 840 (971)
T 2x1g_F 801 TMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTL 840 (971)
T ss_dssp HHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC
Confidence 557899999999987766665 77 78888888777764
No 19
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.63 E-value=1.4e-06 Score=102.79 Aligned_cols=296 Identities=10% Similarity=0.083 Sum_probs=195.9
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcC-----CChhHHHHHHHHHHHHHHHhchhhhchhhHHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASY--DSVFNLCLASVTNSISS-----RNLALASSCLRTTGALVNVLGLKALAELPLIM 162 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~-----~~~~l~~sallcl~~l~~vLg~~~iP~LP~im 162 (554)
+.+|..+-+|+.|++.|++....+ ++.+..+++.+.+.... ....++.+++.++|..++-+..+ -.|||.++
T Consensus 464 ~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl 542 (1023)
T 4hat_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1023)
T ss_dssp TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHH
Confidence 468999999999999999877653 45677777777766542 23456668889999999998654 34678888
Q ss_pred HHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccc--------cccHHHHHHHHhh-ccCCCCCCC
Q 041545 163 ENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFL--------NPYLGDITELLVL-CPEYLPGSD 233 (554)
Q Consensus 163 P~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fl--------sPYL~~il~~l~l-~~~~~~~~~ 233 (554)
..+++.+.+ ..+.++.+++.++..+.+..+..+ +||+++|+..+.. ...+ ..
T Consensus 543 ~~L~~~l~~----------------~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l---~~ 603 (1023)
T 4hat_C 543 LKLFEFMHE----------------THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL---QP 603 (1023)
T ss_dssp HHHHHHTTC----------------SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS---CH
T ss_pred HHHHHHhhc----------------CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhC---CH
Confidence 877776643 134588999999999999988766 6999999987622 2333 23
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhh---c---------CcchHHHH
Q 041545 234 PKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVD---A---------GDSSLVIA 301 (554)
Q Consensus 234 ~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~---~---------~~~~l~~l 301 (554)
.++...+++| ..+.+.+| -+. ..+.+...+++++...|+.+.. . ....+..+
T Consensus 604 ~~~~~lyeai-~~vi~~~~-----------~~~----~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~i 667 (1023)
T 4hat_C 604 QQVHTFYKAC-GIIISEER-----------SVA----ERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1023)
T ss_dssp HHHHHHHHHH-HHHHTTCC-----------SHH----HHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHhCC-----------CHh----hHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHH
Confidence 4555666677 55555555 111 1233488899999999988663 1 12357788
Q ss_pred HHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcc---------cC-----hhhHHHHHHHHHHHHHHHHHhhcccc
Q 041545 302 FEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHR---------VS-----IQDIDIVEKSVISTVISLTMKLTETM 367 (554)
Q Consensus 302 l~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~---------~~-----~~~i~~vE~~vi~a~~~lVlKLsE~t 367 (554)
++++......+|. ....+...++..++...+.=++.- .. ....-.+=..+..-+..+|-|-.+..
T Consensus 668 l~~~~~v~~~lg~-~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~ 746 (1023)
T 4hat_C 668 IKTNVAVCTSMGA-DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLD 746 (1023)
T ss_dssp HHHHHHHHHHHGG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHH
T ss_pred HHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 8998888888887 445677777777776554422110 00 01122334445555555555554322
Q ss_pred -----h-hhHHHHHHh-hhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHH----HHHHhhh
Q 041545 368 -----F-RPLFIRSIE-WAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEG----CVQHLTD 432 (554)
Q Consensus 368 -----F-rPLf~kl~~-WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~----~~~~L~~ 432 (554)
| -|++..+.. ...+ ....|---|..++..+.+++++.+.|+...+++. +.+.+++
T Consensus 747 ~~~~~~~~~l~~~vl~dY~~~----------~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~ 812 (1023)
T 4hat_C 747 DVVKVLVEPLLNAVLEDYMNN----------VPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK 812 (1023)
T ss_dssp HHHHHTHHHHHHHHHHHHHHS----------CGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhHHHHHHHHHHHHHhC----------ChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc
Confidence 3 566555443 3322 2456778888999999999999888877666655 4466654
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.52 E-value=2.1e-05 Score=91.39 Aligned_cols=303 Identities=12% Similarity=0.051 Sum_probs=184.3
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~ 171 (554)
...+|.+++.+++.+++-++.....+..+++.+.+++.+ ++|+..|..++..+|+.++..+.||+|.+|..+...+..
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK 579 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 556999999999999998875333688889988888854 889999999999999999999999999999999887764
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc-ccccccHHHHHHHHh--hccCCCCCCCh-hHHH---HHHHHH
Q 041545 172 ISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLG-GFLNPYLGDITELLV--LCPEYLPGSDP-KLKV---KADAVR 244 (554)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~-~FlsPYL~~il~~l~--l~~~~~~~~~~-~~~s---~~~~l~ 244 (554)
.. ........++.+++.++...| .-+.||++.++..+. +......+.++ .... .+++|
T Consensus 580 ~~--------------~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l- 644 (963)
T 2x19_B 580 QI--------------HKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL- 644 (963)
T ss_dssp TC--------------SCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH-
T ss_pred CC--------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-
Confidence 11 112356788888888888886 667789888886652 11100011111 1111 12222
Q ss_pred HHHHhhhhHHHHHHHH-h-------h-hhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCC
Q 041545 245 RLLTDKIQVIVLIKML-V-------I-DFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRS 315 (554)
Q Consensus 245 ~~la~~v~~~~~~~~~-~-------~-~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~ 315 (554)
..+.+.+.-..+.... . - .....+... .+.++|.+.+..+... .+.......+.+++..+...+..
T Consensus 645 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 645 SNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV----LQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHCCSSCCC---------------CCCHHHHH----HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHHHcCCCcccccccccccccCCCCCCCCchHHH----HHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccc
Confidence 2222222200000000 0 0 000112223 5666666665554322 23344557888999999888874
Q ss_pred ccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHH--hhcc---cchhhHHHHHHhhhhhccccccccc
Q 041545 316 SIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTM--KLTE---TMFRPLFIRSIEWAESDVEDIGSMK 390 (554)
Q Consensus 316 ~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVl--KLsE---~tFrPLf~kl~~WA~~~~~~~~~~~ 390 (554)
..++.+.+++.++..+...+ +..+......++- |..+ ..+-+++..++.+...-..+...
T Consensus 720 -~~~~l~~~~~~l~~~~~~~~------------~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~-- 784 (963)
T 2x19_B 720 -FAPMVPQLCEMLGRMYSTIP------------QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPR-- 784 (963)
T ss_dssp -TGGGHHHHHHHHHHHHHHSC------------CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred -ccccHHHHHHHHHHHHHcCC------------ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcc--
Confidence 57789999998888654311 1223343444444 5543 12333444445544221111000
Q ss_pred cccchhHHHHHHHHHHHHHhcchhhc--cc-hhhHHHHHHHHhhh
Q 041545 391 SKSIDRAIVFYSLVNKLAESHRSLFV--PY-FKYLLEGCVQHLTD 432 (554)
Q Consensus 391 ~~~~~R~itfy~l~~~l~e~LKslft--py-~~~ll~~~~~~L~~ 432 (554)
...+=...||.++..+..+.-..+. |. +..+++-+...|+.
T Consensus 785 -~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 828 (963)
T 2x19_B 785 -DHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF 828 (963)
T ss_dssp -TCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC
T ss_pred -cCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC
Confidence 1234447889999999988877664 65 78888888877765
No 21
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.47 E-value=2.8e-05 Score=91.71 Aligned_cols=298 Identities=9% Similarity=0.049 Sum_probs=172.3
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcC-----CChhHHHHHHHHHHHHHHHhchhhhchhhHHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASY--DSVFNLCLASVTNSISS-----RNLALASSCLRTTGALVNVLGLKALAELPLIM 162 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~--~~~~~~~L~~v~~~l~~-----~~~~l~~sallcl~~l~~vLg~~~iP~LP~im 162 (554)
+.+|..|.+|+.+++.+|..++.. .+.+..+++.+...... +++.++..++-++|..++-+..+ -.|||.++
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl 542 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 568899999999999999877653 12355556555543221 23344445778999999887765 36788888
Q ss_pred HHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc--------ccHHHHHHHH-hhccCCCCCCC
Q 041545 163 ENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN--------PYLGDITELL-VLCPEYLPGSD 233 (554)
Q Consensus 163 P~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls--------PYL~~il~~l-~l~~~~~~~~~ 233 (554)
+.++..+.+ .+..++..++.++..+++..+..+. ||+++|+..+ .....+ ..
T Consensus 543 ~~ll~~l~~----------------~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~---~~ 603 (1049)
T 3m1i_C 543 LKLFEFMHE----------------THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL---QP 603 (1049)
T ss_dssp HHHHHHTTS----------------SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS---CH
T ss_pred HHHHHHhcC----------------CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhC---CH
Confidence 888876543 1356899999999999999887764 9999999886 222332 11
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhc---------Cc---chHHHH
Q 041545 234 PKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDA---------GD---SSLVIA 301 (554)
Q Consensus 234 ~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~---------~~---~~l~~l 301 (554)
+.....+.++ ..++...| -.+...+ +...+++++.+.|..+... +. ..+..+
T Consensus 604 ~~~~~~~eai-~~ii~~~~-----------~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 667 (1049)
T 3m1i_C 604 QQVHTFYKAC-GIIISEER-----------SVAERNR----LLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1049)
T ss_dssp HHHHHHHHHH-HHHHHTCC-----------SHHHHHH----HHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHcCC-----------CHHHHHH----HHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHH
Confidence 2333334444 22222222 1112222 3788999999999875521 11 234567
Q ss_pred HHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcc-------cC----h---hhHHHHHHHHHHHHHHHHHhhc--c
Q 041545 302 FEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHR-------VS----I---QDIDIVEKSVISTVISLTMKLT--E 365 (554)
Q Consensus 302 l~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~-------~~----~---~~i~~vE~~vi~a~~~lVlKLs--E 365 (554)
++++...+..+++. +..+...++.-++..+....... .. . .....+=..+...+-.++-+.. +
T Consensus 668 l~~~~~~~~~l~~~-f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~ 746 (1049)
T 3m1i_C 668 IKTNVAVCTSMGAD-FYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLD 746 (1049)
T ss_dssp HHHHHHHHHHHGGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHH
T ss_pred HHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 78888888888873 44455555544444443221100 00 0 0001111112222222222221 2
Q ss_pred cchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHH
Q 041545 366 TMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQH 429 (554)
Q Consensus 366 ~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~ 429 (554)
..+.|+.-.+++--..+... . ....|.-.++.+++.++.++++-+.||...+++.+...
T Consensus 747 ~~~~~~~~~~l~~ll~~~~~-~----~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~ 805 (1049)
T 3m1i_C 747 DVVKVLVEPLLNAVLEDYMN-N----VPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFEC 805 (1049)
T ss_dssp HHHHHTHHHHHHHHHHHHHH-S----CGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-C----CcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 22444444333322211110 0 12234466899999999999999999988887776654
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.44 E-value=4e-05 Score=89.49 Aligned_cols=285 Identities=12% Similarity=0.168 Sum_probs=180.3
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh-----------chhhhchhh
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVL-----------GLKALAELP 159 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vL-----------g~~~iP~LP 159 (554)
...-+|.+|..+++.+++-+.+ ..+..+++.+++++.+++.+|+..|..++..+++.. +..+.||+|
T Consensus 470 ~~p~vr~~a~~~lg~~~~~~~~--~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 470 PHIILRVDAIKYIYTFRNQLTK--AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp SCHHHHHHHHHHHHHTGGGSCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CCceehHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 3677999999999999988732 368899999999998888999999999999999853 456899999
Q ss_pred HHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHh--hccCCCCCCChhHH
Q 041545 160 LIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLV--LCPEYLPGSDPKLK 237 (554)
Q Consensus 160 ~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~--l~~~~~~~~~~~~~ 237 (554)
.+|+.++..+++... ... .......++.+++.+++.++.-+.||.+.++..+. +.....+..+....
T Consensus 548 ~ll~~L~~ll~~~~~-------~~~----~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~ 616 (960)
T 1wa5_C 548 ILLKNLIALILKHGS-------SPE----KLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFT 616 (960)
T ss_dssp HHHHHHHHHHHTTCC-------CHH----HHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHhccC-------CCC----cccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 999999998876310 000 00012367788899999999999999999997762 11111112222221
Q ss_pred -HHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCc
Q 041545 238 -VKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSS 316 (554)
Q Consensus 238 -s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~ 316 (554)
...++| ..++.... ...+.. +...++|.+....+. +...-....++++..+++.. ..
T Consensus 617 ~~~~e~l-~~l~~~~~------------~~~~~~----~~~~~~p~~~~iL~~---~~~~~~~~~~~i~~~l~~~~--~~ 674 (960)
T 1wa5_C 617 HYTFESI-GAILNYTQ------------RQNLPL----LVDSMMPTFLTVFSE---DIQEFIPYVFQIIAFVVEQS--AT 674 (960)
T ss_dssp HHHHHHH-HHHHHTSC------------GGGHHH----HHHHHHHHHHHHHHT---TCTTTHHHHHHHHHHHHHHC--SS
T ss_pred HHHHHHH-HHHHhcCC------------cchHHH----HHHHHHHHHHHHHHh---hhHhhHHHHHHHHHHHHHhc--cC
Confidence 123333 33333211 011222 266677877777653 22223445678888887776 45
Q ss_pred cccchHHHHHHHH--HHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchh--hHHHHHHhhhhhccccccccccc
Q 041545 317 IGGFHGKIFDQCL--LALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFR--PLFIRSIEWAESDVEDIGSMKSK 392 (554)
Q Consensus 317 i~~~~~~l~~~~l--~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFr--PLf~kl~~WA~~~~~~~~~~~~~ 392 (554)
+..+...++..++ ..++.+. .+. .+..++-.++.+-.+ .|. ..+...+.-... .
T Consensus 675 ~~~~~~~~~~~l~~~~~~~~~~-------~~~----~~~~~L~~~~~~~~~-~~~~~~~~l~~~~~~~~----------~ 732 (960)
T 1wa5_C 675 IPESIKPLAQPLLAPNVWELKG-------NIP----AVTRLLKSFIKTDSS-IFPDLVPVLGIFQRLIA----------S 732 (960)
T ss_dssp CCTTTGGGHHHHTSGGGGCCTT-------THH----HHHHHHHHHHHHHGG-GCSCSHHHHHHHHHHHT----------C
T ss_pred CCHHHHHHHHHHcCHHHhcCCC-------Cch----hHHHHHHHHHHhChH-HHHHHHHHHHHHHHHhC----------C
Confidence 7778888888887 6665432 111 122223333333332 222 222222221111 0
Q ss_pred cchhHHHHHHHHHHHHHhcchh-hccchhhHHHHHHHHhhhh
Q 041545 393 SIDRAIVFYSLVNKLAESHRSL-FVPYFKYLLEGCVQHLTDA 433 (554)
Q Consensus 393 ~~~R~itfy~l~~~l~e~LKsl-ftpy~~~ll~~~~~~L~~~ 433 (554)
...+ ...|.++..++..+++- |.||...+++.+...|+..
T Consensus 733 ~~~~-~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 733 KAYE-VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp TTTH-HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred Cccc-chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 1123 44488999999999988 9999999999998888653
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.42 E-value=3.6e-06 Score=82.03 Aligned_cols=110 Identities=12% Similarity=0.184 Sum_probs=90.5
Q ss_pred HHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhchhhh
Q 041545 78 SEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSIS-SRNLALASSCLRTTGALVNVLGLKAL 155 (554)
Q Consensus 78 ~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vLg~~~i 155 (554)
+.+...+. +.+|..|..|+.+|..+++..++- ...+..+++.+...+. +.+..++..++.|++.++..+|..+-
T Consensus 18 ~~l~~~l~----s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 18 KDFYDKLE----EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp TTHHHHHT----CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHhhhc----cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445444 568999999999999999986542 3356788888888885 88999999999999999999999999
Q ss_pred chhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHh
Q 041545 156 AELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL 207 (554)
Q Consensus 156 P~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l 207 (554)
||.+.++|.+++.+++. ...+..++..++..+++..
T Consensus 94 ~~~~~ilp~ll~~l~d~----------------~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEK----------------KPNVVTALREAIDAIYAST 129 (242)
T ss_dssp HHHHHHHHHHHHGGGCC----------------CHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHHHHHcC
Confidence 99999999999977652 3457788899998888864
No 24
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.34 E-value=0.00019 Score=83.77 Aligned_cols=361 Identities=12% Similarity=0.130 Sum_probs=198.4
Q ss_pred HHhhhcC---ChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCcc
Q 041545 16 YASLFNG---EICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESN 92 (554)
Q Consensus 16 ~~ll~~~---~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~ 92 (554)
+..|+.+ .+.||.+|+..+. +.. .| + ..+++..+++.+...+. + ++
T Consensus 461 ~p~l~~~~~~~p~vr~~a~~~lg-~~~---------------------~~--~---~~~~l~~~l~~l~~~L~---d-~~ 509 (960)
T 1wa5_C 461 APDLTSNNIPHIILRVDAIKYIY-TFR---------------------NQ--L---TKAQLIELMPILATFLQ---T-DE 509 (960)
T ss_dssp HHHHHCSSCSCHHHHHHHHHHHH-HTG---------------------GG--S---CHHHHHHHHHHHHHHTT---C-SC
T ss_pred HHHhcCCCCCCceehHHHHHHHH-HHH---------------------hh--C---CHHHHHHHHHHHHHHhC---C-CC
Confidence 3356767 8999999999888 111 12 1 24678888888888776 2 36
Q ss_pred HhHHHHHHHHHHHHHHHh----------CCC--CchHHHHHHHHHHHhcCCC-----hhHHHHHHHHHHHHHHHhchhhh
Q 041545 93 ISLKLTAVSTLEVLANRF----------ASY--DSVFNLCLASVTNSISSRN-----LALASSCLRTTGALVNVLGLKAL 155 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~----------g~~--~~~~~~~L~~v~~~l~~~~-----~~l~~sallcl~~l~~vLg~~~i 155 (554)
..+|-.|..|++.+++.. .++ .|++..+|......+.... ....+.++-|++.++..++..+.
T Consensus 510 ~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~ 589 (960)
T 1wa5_C 510 YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ 589 (960)
T ss_dssp HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG
T ss_pred hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 778999999999999842 222 4678888888887776531 11346889999999999999999
Q ss_pred chhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHh-cccccccHHHHHHHH--hhccCCCCCC
Q 041545 156 AELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL-GGFLNPYLGDITELL--VLCPEYLPGS 232 (554)
Q Consensus 156 P~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l-~~FlsPYL~~il~~l--~l~~~~~~~~ 232 (554)
||++.+||.++..+.... + + ..+......++.+++.++... |.-+.+|.+.++..+ .+.... ...
T Consensus 590 p~~~~l~~~L~~~l~~~~------~----~-~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~-~~~ 657 (960)
T 1wa5_C 590 PLFPQLLAQFIEIVTIMA------K----N-PSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI-QEF 657 (960)
T ss_dssp GGHHHHHHHHHHHHHHHT------T----S-CCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC-TTT
T ss_pred hHHHHHHHHHHHHHHHHH------h----C-CCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh-Hhh
Confidence 999999999999887631 0 0 012223345666676666652 233344555444433 111111 000
Q ss_pred ChhHHHHHHHHHHHHHhhhh-----HHH-HH--HHH-hhhhhHHHHHHHHHH----HHhH--hhHHHHHhhhhhhcCcch
Q 041545 233 DPKLKVKADAVRRLLTDKIQ-----VIV-LI--KML-VIDFDLKFLLFILHL----VRLA--LPPLLKIYSGAVDAGDSS 297 (554)
Q Consensus 233 ~~~~~s~~~~l~~~la~~v~-----~~~-~~--~~~-~~~~~~~~~~~~~~~----~r~L--lpal~~~~~~~~~~~~~~ 297 (554)
.+..-..+..+.... +.++ +-. .. +.. ..+.=.....++..+ ...+ +..+.+....+.......
T Consensus 658 ~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 736 (960)
T 1wa5_C 658 IPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYE 736 (960)
T ss_dssp HHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTTH
T ss_pred HHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCccc
Confidence 011111111111110 0000 000 00 000 000000111111111 1111 244555554433222112
Q ss_pred HHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchh--------
Q 041545 298 LVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFR-------- 369 (554)
Q Consensus 298 l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFr-------- 369 (554)
...+.++...+..++...+.++.+.++..+++.++.... +. +=...+-.+..++.+.+...|-
T Consensus 737 -~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~-----~~---~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~ 807 (960)
T 1wa5_C 737 -VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKT-----ER---YVKKLTVFFGLISNKLGSDFLIHFIDEVQD 807 (960)
T ss_dssp -HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCC-----HH---HHHHHHHHHHHHHHHHCHHHHHHHHHTTST
T ss_pred -chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc-----Hh---HHHHHHHHHHHHHHHcCHHHHHHHHHhcch
Confidence 456788888888888755889999999999998865311 11 1111222222333344332222
Q ss_pred hHHHHHH--hhhhhccccccccccccchhHHHHHHHHHHHHHh-c-chhhccchhhHHHHHHHHhhhhh
Q 041545 370 PLFIRSI--EWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAES-H-RSLFVPYFKYLLEGCVQHLTDAK 434 (554)
Q Consensus 370 PLf~kl~--~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~-L-Kslftpy~~~ll~~~~~~L~~~~ 434 (554)
.+|..++ -|... ..... +..+|.+++.++..=+... + -..+.+.++.+++.++++|....
T Consensus 808 ~~f~~~~~~~w~~~-~~~~~----~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 871 (960)
T 1wa5_C 808 GLFQQIWGNFIITT-LPTIG----NLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQS 871 (960)
T ss_dssp THHHHHHHHTHHHH-GGGCC----SHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHhccc-hhhcc----CHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhCCc
Confidence 2233322 46543 22222 4679999988866655443 1 24556789999999999887753
No 25
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.31 E-value=0.00014 Score=85.37 Aligned_cols=346 Identities=12% Similarity=0.092 Sum_probs=208.0
Q ss_pred CccHhHHHHHHHHHHHHHHHhCC-------CCchHHHHHHHHHHHhc-----CCChhHHHHHHHHHHHHHHHhchhhhch
Q 041545 90 ESNISLKLTAVSTLEVLANRFAS-------YDSVFNLCLASVTNSIS-----SRNLALASSCLRTTGALVNVLGLKALAE 157 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~-------~~~~~~~~L~~v~~~l~-----~~~~~l~~sallcl~~l~~vLg~~~iP~ 157 (554)
+.+|.-+-+|+.++..+|+.+.. +.+.+..+++.+...++ .+++.|+..++.++|..++-+..+- .|
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~ 532 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES-AA 532 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TT
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hh
Confidence 45788999999999999998753 12233344444444433 4679999999999999999887653 45
Q ss_pred hhHHHHHHHH--hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH--hhccCCCCCCC
Q 041545 158 LPLIMENVRK--KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL--VLCPEYLPGSD 233 (554)
Q Consensus 158 LP~imP~ll~--~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l--~l~~~~~~~~~ 233 (554)
||.+++.++. .+.+ .+..+..++..++..+++..+..+.||+++|+..+ .+...+.++.+
T Consensus 533 l~~~L~~ll~~~gl~~----------------~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~ 596 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHN----------------TNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTD 596 (980)
T ss_dssp HHHHHHHHTSTTTTTC----------------CCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC
T ss_pred HHHHHHHHhccccccC----------------CChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCc
Confidence 5655555554 2222 23457899999999999999999999999999987 22322211111
Q ss_pred h-----------------hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCc-
Q 041545 234 P-----------------KLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGD- 295 (554)
Q Consensus 234 ~-----------------~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~- 295 (554)
+ +.--.+.++ ..+....+ .|.+. ...+.+.+++|+.+.|+.++....
T Consensus 597 ~~~~~~~~~~~~~~~~~~~ql~L~eai-g~li~~~~---------~~~e~-----~~~~l~~ll~pl~~~l~~~l~~~~~ 661 (980)
T 3ibv_A 597 MDAPVPTLNSSIRNSDFNSQLYLFETV-GVLISSGN---------LTPEE-----QALYCDSLINALIGKANAALSSDLS 661 (980)
T ss_dssp --CSSCCHHHHHHTTTHHHHHHHHHHH-HHHHHHSC---------CCHHH-----HHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccccccchhhhcccCCchHHHHHHHHH-HHHHhCCC---------CCHHH-----HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 0 111123333 22222221 11111 123489999999999998774221
Q ss_pred --ch---HHHHHHHHHHHHHhcCCCc-----cccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcc
Q 041545 296 --SS---LVIAFEILGNIISRMDRSS-----IGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTE 365 (554)
Q Consensus 296 --~~---l~~ll~~L~~~i~~~~~~~-----i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE 365 (554)
.. +..++..+....+...... +..........++.+|+.- .....|=+.+..++-.+|-.|.+
T Consensus 662 ~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~-------~~~~~irea~~~~~~r~i~~lg~ 734 (980)
T 3ibv_A 662 ALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRM-------GFNEDIRGAVRFTSGRIINVVGP 734 (980)
T ss_dssp --CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHS-------CCSHHHHHHHHHHHHHHTTTTHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhc-------CCcHHHHHHHHHHHHHHHHHccH
Confidence 21 2233334444444332110 1112223333344444431 11123445577778888887766
Q ss_pred cchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhhcccccchhhhh
Q 041545 366 TMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGVNTANSTRKK 445 (554)
Q Consensus 366 ~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~~~~~~~~~~~k 445 (554)
. +.|+.-++++--... -......-|-.+++.+..++|.-+.|+...++.++++..-..-+. ..
T Consensus 735 ~-~~p~lp~~i~~ll~~---------~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~-~~------ 797 (980)
T 3ibv_A 735 D-MLPKVPQLISILLNS---------IDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSA-AP------ 797 (980)
T ss_dssp H-HTTTHHHHHHHHHHH---------CCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred h-HHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC------
Confidence 5 888888777644332 134557889999999999999988888777777766533221100 00
Q ss_pred hhhhhhhcccccccccchhhhHHHHHHHHHHHHHhhccccccccccch---hhHhhhHHHHH
Q 041545 446 KARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDTASLKFLDS---TNFQVLLKPIV 504 (554)
Q Consensus 446 ~~~~~~~~~~~e~~~~~~~~~~~l~~~vl~~L~~~F~~D~~~~~F~~~---~rf~~l~~pLv 504 (554)
.++ +. -++.-.|+|.-+..|+....++-.+ =|++. ..|+.++.-|+
T Consensus 798 ------~~t-----d~-~r~~~~l~r~~~~fl~~i~~~~~~~-v~~s~~n~~~l~~~l~~l~ 846 (980)
T 3ibv_A 798 ------QGT-----DD-AVKQNDLRKSYISFILQLLNKGFGS-ILFTEENQVYFDPLINSIL 846 (980)
T ss_dssp --------C-----CH-HHHHHHHHHHHHHHHHHHHHTTCTG-GGGSHHHHTTHHHHHHHHH
T ss_pred ------CCc-----HH-HHHHHHHHHHHHHHHHHHHhCCchh-hhcCCcchHHHHHHHHHHH
Confidence 011 11 1223347788889999999999765 36665 45888888777
No 26
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.16 E-value=0.00011 Score=86.84 Aligned_cols=305 Identities=10% Similarity=0.098 Sum_probs=191.3
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhcC----CChhHHHH-HHHHHHHHHH
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFAS--YDSVFNLCLASVTNSISS----RNLALASS-CLRTTGALVN 148 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~--~~~~~~~~L~~v~~~l~~----~~~~l~~s-allcl~~l~~ 148 (554)
+++.|..-+.+ ++-.|..+.++..|++.+|.++.. +++.++.+++.+...... +++.+..+ .+..+|..++
T Consensus 478 ~~~~l~~~~~~--~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~ 555 (1073)
T 3gjx_A 478 MTKKLQNQVNG--TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPR 555 (1073)
T ss_dssp HHHHHHHHHTS--CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhcC--CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHH
Confidence 33444443342 345699999999999999976664 245677777777765432 23444444 4569999999
Q ss_pred HhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccc--------cccHHHHHH
Q 041545 149 VLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFL--------NPYLGDITE 220 (554)
Q Consensus 149 vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fl--------sPYL~~il~ 220 (554)
-+..+ -.||+.++..+++.+.+ .++.++.+++.|+..+.+..+..| .||+++|+.
T Consensus 556 wl~~h-~~~L~~vl~~L~~~m~~----------------~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~ 618 (1073)
T 3gjx_A 556 FLRAH-WKFLKTVVNKLFEFMHE----------------THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILN 618 (1073)
T ss_dssp HHHHC-HHHHHHHHHHHHHHTTC----------------CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHT
T ss_pred HHHhC-HHHHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Confidence 99866 45777777777765443 234588999999999999998765 489999998
Q ss_pred HH-hhccCCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhc------
Q 041545 221 LL-VLCPEYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDA------ 293 (554)
Q Consensus 221 ~l-~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~------ 293 (554)
.+ .....+ ..+++..-++++ ..+++.+| -+.. .+++...++|+..+.|+.+...
T Consensus 619 ~~~~~~~~l---~~~~~~~lyeav-~~vi~~~p-----------~~~~----~~~~i~~Lm~~~~~~w~~l~~~~~~~~~ 679 (1073)
T 3gjx_A 619 NINTIICDL---QPQQVHTFYEAV-GYMIGAQT-----------DQTV----QEHLIEKYMLLPNQVWDSIIQQATKNVD 679 (1073)
T ss_dssp SHHHHHTTC---CHHHHHHHHHHH-HHHHTTCC-----------CHHH----HHHHHHHHTHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhc---CHHHHHHHHHHH-HHHHHhCC-----------Ccch----HHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 76 222333 234666677777 66666777 1111 2344888999999999987631
Q ss_pred ---Cc---chHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhh-hhhcc-----------cCh-----hhHHHHHH
Q 041545 294 ---GD---SSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDL-RRQHR-----------VSI-----QDIDIVEK 350 (554)
Q Consensus 294 ---~~---~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~-R~~~~-----------~~~-----~~i~~vE~ 350 (554)
+. ..+..++++...+...+|. .+.+.+..++...|+. |...+ ... ...-.+=.
T Consensus 680 ~~~d~~~i~~l~~il~~n~~v~~~~g~----~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~ 755 (1073)
T 3gjx_A 680 ILKDPETVKQLGSILKTNVRACKAVGH----PFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKR 755 (1073)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHhhhHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHH
Confidence 22 3456777777777777776 3444444444444433 21110 000 11222444
Q ss_pred HHHHHHHHHHHhhccc-----ch-hhHHHHHHh-hhhhccccccccccccchhHHHHHHHHHHHHHhcchhhccchhhHH
Q 041545 351 SVISTVISLTMKLTET-----MF-RPLFIRSIE-WAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESHRSLFVPYFKYLL 423 (554)
Q Consensus 351 ~vi~a~~~lVlKLsE~-----tF-rPLf~kl~~-WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~LKslftpy~~~ll 423 (554)
.+.+.+..+|.|-.+. .| -|++..+.. ...+ -...|---+..++..+.++++..+.|+...++
T Consensus 756 eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~----------~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il 825 (1073)
T 3gjx_A 756 ETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRN----------VPAAREPEVLSTMAIIVNKLGGHITAEIPQIF 825 (1073)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHS----------CGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcC----------CcccccHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 5555555566665332 23 455544432 3322 23456677888999999999999999887777
Q ss_pred HH----HHHHhhh
Q 041545 424 EG----CVQHLTD 432 (554)
Q Consensus 424 ~~----~~~~L~~ 432 (554)
+. +.+.+++
T Consensus 826 ~~vf~~Tl~mi~~ 838 (1073)
T 3gjx_A 826 DAVFECTLNMINK 838 (1073)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhC
Confidence 65 4456654
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.09 E-value=0.0018 Score=76.24 Aligned_cols=306 Identities=9% Similarity=0.061 Sum_probs=164.2
Q ss_pred hcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCC----------
Q 041545 20 FNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTG---------- 89 (554)
Q Consensus 20 ~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~---------- 89 (554)
.+++..|+..+++....=...... .+..|.. -.+++..+++.+..-+.-.++
T Consensus 354 ~~~d~~v~~~~lefw~~l~~~l~~--------------~~~~~~~----~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e 415 (1049)
T 3m1i_C 354 KIEERELFKTTLDYWHNLVADLFY--------------EPLKKHI----YEEICSQLRLVIIENMVRPEEVLVVENDEGE 415 (1049)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHH--------------STTCGGG----GHHHHHHHHHHHHHTCCCCTTCCEEECTTSC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHh--------------chhHHHH----HHHHHHHHHHHHHHhcCCCcceeeeeCCCCc
Confidence 467778888888877643331100 0011111 257777888777776643211
Q ss_pred --------CccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHhchhh-hchh
Q 041545 90 --------ESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSIS--SRNLALASSCLRTTGALVNVLGLKA-LAEL 158 (554)
Q Consensus 90 --------~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~--~~~~~l~~sallcl~~l~~vLg~~~-iP~L 158 (554)
++++++|.++.++|+.++..+|. ..+..+++.+.+.++ ..+|+.+++++.|+|+++..++... -+++
T Consensus 416 ~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~--~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l 493 (1049)
T 3m1i_C 416 IVREFVKESDTIQLYKSEREVLVYLTHLNVI--DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV 493 (1049)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred chHhhhccchHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH
Confidence 11235788999999999987764 456666666666664 3689999999999999998887664 3668
Q ss_pred hHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHH
Q 041545 159 PLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKV 238 (554)
Q Consensus 159 P~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s 238 (554)
|.+++.++....... ..+....+...++-+++++-+-+... ..||+.++..+... +.. .+..+..
T Consensus 494 ~~v~~~l~~l~~~~~-----------~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~--l~~-~~~~V~~ 558 (1049)
T 3m1i_C 494 VTVIKDLLDLTVKKR-----------GKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEF--MHE-THEGVQD 558 (1049)
T ss_dssp HHHHHHHHHHTTSSC-----------SHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHH--TTS-SCHHHHH
T ss_pred HHHHHHHHHHHhhhc-----------cccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH--hcC-CCHHHHH
Confidence 999998876332210 01112223333555555444332221 25677777765222 111 1234444
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhh-cCcchHHHHHHHHHHHHHhcCC-Cc
Q 041545 239 KADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVD-AGDSSLVIAFEILGNIISRMDR-SS 316 (554)
Q Consensus 239 ~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~-~~~~~l~~ll~~L~~~i~~~~~-~~ 316 (554)
.+..-...+++..+ .......- .. ..--++.+.+.+..+.. -+......+++.+...+...+. ..
T Consensus 559 ~A~~al~~l~~~~~----~~l~~~~~-~~--------~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~ 625 (1049)
T 3m1i_C 559 MACDTFIKIVQKCK----YHFVIQQP-RE--------SEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAE 625 (1049)
T ss_dssp HHHHHHHHHHHHHT----HHHHSCCT-TC--------SSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHHHHHHHH----HHhhcccC-CC--------CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 44333345554444 00000000 00 00113344444433332 2333456778999999988873 33
Q ss_pred cccchHHHHHHHHHHhhhhhh----ccc---ChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHH
Q 041545 317 IGGFHGKIFDQCLLALDLRRQ----HRV---SIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRS 375 (554)
Q Consensus 317 i~~~~~~l~~~~l~aLd~R~~----~~~---~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl 375 (554)
...+...+...+++.++.-.. ++. +.+.+..+ ..+.+|...++-++. ..|.|.+..+
T Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~~l~~~~~~~~~l~-~~f~p~~~~i 689 (1049)
T 3m1i_C 626 RNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII-ANIIKTNVAVCTSMG-ADFYPQLGHI 689 (1049)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHH-HHHHHHHHHHHHHHG-GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHH-HHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 456677777777666654221 111 12222333 345666666666664 5666655443
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.91 E-value=0.00069 Score=74.85 Aligned_cols=121 Identities=11% Similarity=0.052 Sum_probs=86.9
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.+...|+++++.+|.-||..|+.- . ..+....+++.+...+. +.+.
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i----------------------------~--~~~~~~~l~~~l~~~L~----d~~~ 135 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCI----------------------------R--VDKITEYLCEPLRKCLK----DEDP 135 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTC----------------------------C--SGGGHHHHHHHHHHHSS----CSCH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcC----------------------------C--hHHHHHHHHHHHHHHcC----CCCh
Confidence 344567888888888888888721 1 12233446777877776 4478
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKKSR 170 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~l~ 170 (554)
.+|++|+.|+..+++..+. .+. ..++.+.+.+.++++.|+.+|+.++++++..-... .++..|..++.++..+.
T Consensus 136 ~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~ 212 (591)
T 2vgl_B 136 YVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN 212 (591)
T ss_dssp HHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC
Confidence 8999999999999985432 233 47788888898889999999999999988764433 46666777777777654
Q ss_pred h
Q 041545 171 E 171 (554)
Q Consensus 171 ~ 171 (554)
+
T Consensus 213 ~ 213 (591)
T 2vgl_B 213 E 213 (591)
T ss_dssp H
T ss_pred C
Confidence 3
No 29
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.90 E-value=0.0011 Score=78.01 Aligned_cols=345 Identities=13% Similarity=0.150 Sum_probs=195.8
Q ss_pred chHHHHHHHHHHHHhhccCCC-CccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 041545 69 AFESFRKMCSEVVLLVDNSTG-ESNISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSISSRNLALASSCLRTTGAL 146 (554)
Q Consensus 69 ~~~~f~~l~~~L~~il~~~~~-~~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l 146 (554)
..+++-.+++.|..+...... +....+|++++.+++..++-+.. +| .+.+++..+.+++..+++++..+|-.++..+
T Consensus 489 e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l 567 (1023)
T 4hat_C 489 EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKI 567 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 345666788888887764322 23445789999999999998855 55 6889999999999877889999999999999
Q ss_pred HHHhchhhh--------chhhHHHHHHHHhhhhhhh-----hhhhh----c---------------------------c-
Q 041545 147 VNVLGLKAL--------AELPLIMENVRKKSREIST-----YVDVQ----N---------------------------E- 181 (554)
Q Consensus 147 ~~vLg~~~i--------P~LP~imP~ll~~l~~~~~-----~~~~~----~---------------------------~- 181 (554)
|+.|+.++. ||++.++..+.......+. .-++. + +
T Consensus 568 ~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~ 647 (1023)
T 4hat_C 568 VQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQ 647 (1023)
T ss_dssp HHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999884 7999888777765543110 00000 0 0
Q ss_pred ---cccc-hh-hHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH-hhccCCC---------CCC----Ch---hHHHH
Q 041545 182 ---SNED-KT-QRESLMASVLITLEAVIDKLGGFLNPYLGDITELL-VLCPEYL---------PGS----DP---KLKVK 239 (554)
Q Consensus 182 ---~~~~-~d-~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l-~l~~~~~---------~~~----~~---~~~s~ 239 (554)
+... .| .....+..++-++..+...+|..+.||++.|...+ ..+..|. +|. .+ .++..
T Consensus 648 ~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~i 727 (1023)
T 4hat_C 648 STANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTI 727 (1023)
T ss_dssp HHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHH
T ss_pred HhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHH
Confidence 0000 00 11234566677778889999998899999887664 2211110 010 00 00111
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCcccc
Q 041545 240 ADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGG 319 (554)
Q Consensus 240 ~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~ 319 (554)
...+.+++.+.+. -.++...+...++--++.++..-|.... ...--..++.+++..|++.+. .+..
T Consensus 728 k~~il~l~~~~i~-----------~~~~~~~~~~~~~~~l~~~vl~dY~~~~--~~~r~~~vL~l~s~iv~~~~~-~~~~ 793 (1023)
T 4hat_C 728 KKEILKLVETYIS-----------KARNLDDVVKVLVEPLLNAVLEDYMNNV--PDARDAEVLNCMTTVVEKVGH-MIPQ 793 (1023)
T ss_dssp HHHHHHHHHHHHH-----------HCSCHHHHHHHTHHHHHHHHHHHHHHSC--GGGCCHHHHHHHHHHHHHHGG-GCHH
T ss_pred HHHHHHHHHHHHh-----------cCCCHHHHHHHhHHHHHHHHHHHHHhCC--hhhccHHHHHHHHHHHHHHHH-hhhh
Confidence 1122232322222 0011111111113334445566665422 111235778888889998886 4555
Q ss_pred chHHHHHHHHH-Hhhhhh----hcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccc
Q 041545 320 FHGKIFDQCLL-ALDLRR----QHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSI 394 (554)
Q Consensus 320 ~~~~l~~~~l~-aLd~R~----~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~ 394 (554)
..+.+++-++. .|+.=. .+++-..+.-+.=..++..+-.-.+.+.+..|+.++- ..-||.....-. ...
T Consensus 794 ~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~-~~~~a~~h~~r~-----~~~ 867 (1023)
T 4hat_C 794 GVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVD-AICWAFKHNNRD-----VEV 867 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHH-HHHHHHTCCCHH-----HHH
T ss_pred hhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHH-HHHHHcCCCchH-----HHH
Confidence 56655555443 243311 1222223333333444444445566788888888776 445998632100 011
Q ss_pred hhHHHHHHHHHHHHH-----hcchhhccchhhHHHHHHHHhhhhh
Q 041545 395 DRAIVFYSLVNKLAE-----SHRSLFVPYFKYLLEGCVQHLTDAK 434 (554)
Q Consensus 395 ~R~itfy~l~~~l~e-----~LKslftpy~~~ll~~~~~~L~~~~ 434 (554)
.=.-.++.+++.+.. .-...+.-||-.++..+..+++|..
T Consensus 868 ~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 868 NGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD 912 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 112234455555553 2345566888888888888888853
No 30
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.76 E-value=0.004 Score=73.55 Aligned_cols=339 Identities=13% Similarity=0.147 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC---------CchHHHHHHHHHHHhcCCChhHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY---------DSVFNLCLASVTNSISSRNLALASSCL 140 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~---------~~~~~~~L~~v~~~l~~~~~~l~~sal 140 (554)
.++|...+..|..++.. .+..++..|.+|+..||+.+++. .|.+.+++....+....-++.-....+
T Consensus 561 ~~~L~~vl~~L~~~m~~----~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ly 636 (1073)
T 3gjx_A 561 WKFLKTVVNKLFEFMHE----THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFY 636 (1073)
T ss_dssp HHHHHHHHHHHHHHTTC----CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 55677788888887762 24468999999999999998753 245566666666665555677778889
Q ss_pred HHHHHHHHHhchhh--hchhhHHHHHHHHhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHH
Q 041545 141 RTTGALVNVLGLKA--LAELPLIMENVRKKSREIST-YVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGD 217 (554)
Q Consensus 141 lcl~~l~~vLg~~~--iP~LP~imP~ll~~l~~~~~-~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~ 217 (554)
=++|.+++..+... -.++-.+||+.+..+++... ..++.+ .-.+.+ ....+..++-+...+...+|..+.||+..
T Consensus 637 eav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~-~~~d~~-~i~~l~~il~~n~~v~~~~g~~f~~~~~~ 714 (1073)
T 3gjx_A 637 EAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVD-ILKDPE-TVKQLGSILKTNVRACKAVGHPFVIQLGR 714 (1073)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGG-GGGCHH-HHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCch-hccChH-HHHHHHHHHhhhHHHHhhcchhHHHHHHH
Confidence 99999999999865 67889999999999887320 011110 001111 12346677777788899999999999988
Q ss_pred HHHHH-hhccCC--------C-CCC---C-h---hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHh
Q 041545 218 ITELL-VLCPEY--------L-PGS---D-P---KLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLAL 280 (554)
Q Consensus 218 il~~l-~l~~~~--------~-~~~---~-~---~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Ll 280 (554)
|...+ ..+..| . +|. . . .+......|.+++.+.+. -..+...+...++--++
T Consensus 715 i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~-----------~~~~~~~v~~~~i~pl~ 783 (1073)
T 3gjx_A 715 IYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVS-----------RSNDPQMVAENFVPPLL 783 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHT-----------TCSCHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHh-----------cCCCHHHHHHHhHHHHH
Confidence 86543 111111 0 110 0 0 111122233344443333 11111111111122334
Q ss_pred hHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHH-Hhhhhh----hcccChhhHHHHHHHHHHH
Q 041545 281 PPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLL-ALDLRR----QHRVSIQDIDIVEKSVIST 355 (554)
Q Consensus 281 pal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~-aLd~R~----~~~~~~~~i~~vE~~vi~a 355 (554)
.++..-|.....+. --...+++++..|++.+. .+....+.+++-+++ .|+.=. .+++-..+.-+.=..++..
T Consensus 784 ~~vl~dY~~~~p~~--r~~evL~l~s~iv~k~~~-~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~ 860 (1073)
T 3gjx_A 784 DAVLIDYQRNVPAA--REPEVLSTMAIIVNKLGG-HITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSH 860 (1073)
T ss_dssp HHTHHHHHHSCGGG--CCTHHHHHHHHHHHHHGG-GTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccc--ccHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHH
Confidence 44445565422111 123678888889998888 555666666665543 243321 1222222333333344444
Q ss_pred HHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHH---HhcchhhccchhhHHHHHHHHhhh
Q 041545 356 VISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLA---ESHRSLFVPYFKYLLEGCVQHLTD 432 (554)
Q Consensus 356 ~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~---e~LKslftpy~~~ll~~~~~~L~~ 432 (554)
+-...+++....|+.++-.++ ||.....-. ....=.-.++.+++.+. +.-...|--||-.++..+..+++|
T Consensus 861 ~f~~l~~l~~~~~~~~i~~i~-wa~kh~~r~-----i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td 934 (1073)
T 3gjx_A 861 CFPAFLAIPPAQFKLVLDSII-WAFKHTMRN-----VADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTD 934 (1073)
T ss_dssp CGGGTTTSCHHHHHHHHHHHH-HHHTCSSHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHcCCHHHHHHHHHHHH-HHcCCCChh-----HHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445567777788887776654 998532100 00111223455555554 234456677888888888888888
Q ss_pred hh
Q 041545 433 AK 434 (554)
Q Consensus 433 ~~ 434 (554)
..
T Consensus 935 ~~ 936 (1073)
T 3gjx_A 935 TS 936 (1073)
T ss_dssp TT
T ss_pred ch
Confidence 54
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.66 E-value=0.015 Score=64.50 Aligned_cols=322 Identities=16% Similarity=0.146 Sum_probs=167.9
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
++..-|+++.+.+|--|+..|+. +.. .+....+++.+...+. +.+.
T Consensus 111 ~l~kDL~~~n~~vr~lAL~~L~~----------------------------i~~--~~~~~~l~~~l~~~L~----~~~~ 156 (618)
T 1w63_A 111 CIKNDLNHSTQFVQGLALCTLGC----------------------------MGS--SEMCRDLAGEVEKLLK----TSNS 156 (618)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHH----------------------------HCC--HHHHHHHHHHHHHHHH----SCCH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHh----------------------------cCC--HHHHHHHHHHHHHHHc----CCCH
Confidence 34557788888888888888872 111 2334567788888877 3467
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIS 173 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~ 173 (554)
.+|++|+.|+..+.+..+. .....++.+.+.+.+.++.++.+++.++++++.. .++...++.+++|.+++.+++..
T Consensus 157 ~VRk~A~~al~~l~~~~p~---~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~-~~~~~~~~~~~v~~l~~~L~~~~ 232 (618)
T 1w63_A 157 YLRKKAALCAVHVIRKVPE---LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER-SPDMLAHFRKLVPQLVRILKNLI 232 (618)
T ss_dssp HHHHHHHHHHHHHHHHCGG---GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS-HHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChH---HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999997653 3335566666777778889999999999998754 23335566677888888777521
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhhH
Q 041545 174 TYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQV 253 (554)
Q Consensus 174 ~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~~ 253 (554)
.. ....+-.-....++-.+..++.+++.+...-|.. .+-+.+++..+..... ...+.+....+.++ +++.. +.
T Consensus 233 ~~-~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-~~~~~~~L~~l~~~~~--~~~~~~~aV~~ea~-~~i~~-l~- 305 (618)
T 1w63_A 233 MS-GYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-SEAMNDILAQVATNTE--TSKNVGNAILYETV-LTIMD-IK- 305 (618)
T ss_dssp HS-CCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-HHTTHHHHHHHHHTSC--CSSTHHHHHHHHHH-HHHHH-SC-
T ss_pred cC-CCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHhccc--cccchHHHHHHHHH-HHHHh-cC-
Confidence 00 0000000000123445666777776665432221 1111223322211111 01112222233444 22221 11
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHH-HHHHHHHHHHHhcCCCccccchHHHHHHHHHHh
Q 041545 254 IVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLV-IAFEILGNIISRMDRSSIGGFHGKIFDQCLLAL 332 (554)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~-~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aL 332 (554)
-+... .....+++.+. +.+.+..+. ..+..|....... +..+..+...++. .+
T Consensus 306 ----------~~~~l-------~~~a~~~L~~~----L~~~d~~vr~~aL~~L~~i~~~~-p~~~~~~~~~i~~----~l 359 (618)
T 1w63_A 306 ----------SESGL-------RVLAINILGRF----LLNNDKNIRYVALTSLLKTVQTD-HNAVQRHRSTIVD----CL 359 (618)
T ss_dssp ----------CCHHH-------HHHHHHHHHHH----HTCSSTTTHHHHHHHHHHHHHHH-HHHHGGGHHHHHH----GG
T ss_pred ----------CCHHH-------HHHHHHHHHHH----HhCCCCchHHHHHHHHHHHHhhC-HHHHHHHHHHHHH----Hc
Confidence 00000 11122233322 222222222 3345555544432 2223333332222 11
Q ss_pred hhhhhcccChhhHHHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHhhhhhccccccccccccchhHHHHHHHHHHHHHhc
Q 041545 333 DLRRQHRVSIQDIDIVEKSVISTVISLTMKLTE-TMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAIVFYSLVNKLAESH 411 (554)
Q Consensus 333 d~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE-~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~itfy~l~~~l~e~L 411 (554)
. .++ ..|-..+++++++|.. ..+.++...+.+..... ...-|..+ ++.+..+++++
T Consensus 360 ~--------d~d-----~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~---------d~e~r~~~-v~~I~~la~k~ 416 (618)
T 1w63_A 360 K--------DLD-----VSIKRRAMELSFALVNGNNIRGMMKELLYFLDSC---------EPEFKADC-ASGIFLAAEKY 416 (618)
T ss_dssp G--------SSC-----HHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHC---------CHHHHHHH-HHHHHHHHHSS
T ss_pred c--------CCC-----hhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhC---------CHHHHHHH-HHHHHHHHHHh
Confidence 1 111 1244556667777755 45888888888877542 23455555 56677777764
Q ss_pred chhhccchhhHHHHHHHHhhhh
Q 041545 412 RSLFVPYFKYLLEGCVQHLTDA 433 (554)
Q Consensus 412 Kslftpy~~~ll~~~~~~L~~~ 433 (554)
.|-+...++.+.+.|++.
T Consensus 417 ----~~~~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 417 ----APSKRWHIDTIMRVLTTA 434 (618)
T ss_dssp ----CCCHHHHHHHHHHHHHHT
T ss_pred ----CccHHHHHHHHHHHHHhc
Confidence 355666677777777764
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.51 E-value=0.0082 Score=62.41 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=102.7
Q ss_pred cchhhhhhcchhhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHH
Q 041545 2 HWLEVQLSVAPVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSE 79 (554)
Q Consensus 2 ~~~~~~~~~~~~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~ 79 (554)
+|.+-. |+--.|+..|+++++.+|++|+..|..-+...... .. ..... .++|.
T Consensus 14 ~w~~~~--~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~-------------------~~----~~~~~~~~~i~~ 68 (450)
T 2jdq_A 14 EMAPGG--VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNP-------------------PI----DEVISTPGVVAR 68 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSC-------------------CH----HHHHTSTTHHHH
T ss_pred hhcccc--ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC-------------------cH----HHHHHcCCcHHH
Confidence 566554 33345788999999999999999998655321110 00 11222 47888
Q ss_pred HHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhch
Q 041545 80 VVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAE 157 (554)
Q Consensus 80 L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~ 157 (554)
|..+++ .+++..+|..|+.+|..++..-......+ ...++.+++.+.++++.++..++.+++.++..-.. .-..
T Consensus 69 L~~~L~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~-~~~~ 144 (450)
T 2jdq_A 69 FVEFLK---RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM-CRDY 144 (450)
T ss_dssp HHHHHT---CTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHH
T ss_pred HHHHHC---CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH-HHHH
Confidence 888887 34467899999999998885221100111 24678888889888999999999999999874311 1111
Q ss_pred --hhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHh
Q 041545 158 --LPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKL 207 (554)
Q Consensus 158 --LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l 207 (554)
=..++|.++..+++. .+..+...++.++..+...-
T Consensus 145 ~~~~~~i~~L~~~l~~~---------------~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQ---------------NRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHTTCHHHHHHHTTSC---------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HHHCCCHHHHHHHhcCC---------------CCHHHHHHHHHHHHHHhCCC
Confidence 145778888766531 12456778888888888543
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.45 E-value=0.01 Score=63.73 Aligned_cols=152 Identities=11% Similarity=0.039 Sum_probs=102.1
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHH--HHHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESF--RKMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~l~~~L~~il~~~~~~~ 91 (554)
.|+.+|+++++.+|..|+..|..-+...... ....+ ...+|.|..++. .++
T Consensus 78 ~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~------------------------~~~~~~~~g~v~~Lv~lL~---~~~ 130 (528)
T 4b8j_A 78 AMIGGVYSDDNNLQLEATTQFRKLLSIERSP------------------------PIEEVIQSGVVPRFVQFLT---RED 130 (528)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTCSSSC------------------------CHHHHHHTTCHHHHHHHHT---CTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc------------------------hHHHHHHCCCHHHHHHHhC---CCC
Confidence 4678999999999999999998655433210 01111 247889999998 333
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHH
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRK 167 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~ 167 (554)
+..+|..|+.+|..++..-......+. ..++.+++.+.+++..++..++-+++.++..- +..-..+ ..++|+++.
T Consensus 131 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~ 209 (528)
T 4b8j_A 131 FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS-PKCRDLVLANGALLPLLA 209 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHH
Confidence 478999999999999863211111222 36778888888889999999999999998532 1111111 247888888
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLG 208 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~ 208 (554)
.+... .+..+...++.+|..+...-|
T Consensus 210 lL~~~---------------~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 210 QLNEH---------------TKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp TCCTT---------------CCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhcC---------------CCHHHHHHHHHHHHHHHcCCC
Confidence 77431 123467778888888876543
No 34
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.23 E-value=0.022 Score=66.73 Aligned_cols=295 Identities=11% Similarity=0.051 Sum_probs=160.5
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH--HhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTN--SISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRK 167 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~--~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~ 167 (554)
.....+|.++..+++..++-|......+..+|+.+.. ++.+++.+++..|-.++..+|+.++.+..||++.++-.+-.
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH
Confidence 4567799999999999999997643378999999998 88888899999999999999999999999999887765544
Q ss_pred hhhhhhhhhhhhcccc------cc--hhhHHHHHHHHHHHHHHHHHHhc-----------ccccccHHHHHHHHhhccCC
Q 041545 168 KSREISTYVDVQNESN------ED--KTQRESLMASVLITLEAVIDKLG-----------GFLNPYLGDITELLVLCPEY 228 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~------~~--~d~~~~l~~s~lsaL~~lv~~l~-----------~FlsPYL~~il~~l~l~~~~ 228 (554)
.+.-. +. ..++.+ ++ .++.-.-+.-++-+++.++...+ ..+.|.+.++-..+ ...
T Consensus 586 lL~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l---~~~ 659 (980)
T 3ibv_A 586 LLNIS-VS--PVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAAL---SSD 659 (980)
T ss_dssp GGCCC-CC--CCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH---TTS
T ss_pred hhcCc-CC--CCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH---hhc
Confidence 43311 00 000000 00 00111235556666666665543 23333333333322 111
Q ss_pred CCCCChhHHHHHHHHH---HHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHH
Q 041545 229 LPGSDPKLKVKADAVR---RLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEIL 305 (554)
Q Consensus 229 ~~~~~~~~~s~~~~l~---~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L 305 (554)
..+.++. . .+..+. ..+++..+ +. +....| +... .+..++.+..+.+... .........+..+
T Consensus 660 ~~~~~~~-~-~i~~~i~al~~lakgf~--~~-~~~~~p----~~~~----f~~~~~~il~~l~~~~-~~~~irea~~~~~ 725 (980)
T 3ibv_A 660 LSALENI-I-SVYCSLMAIGNFAKGFP--AR-GSEEVA----WLAS----FNKASDEIFLILDRMG-FNEDIRGAVRFTS 725 (980)
T ss_dssp CC--CHH-H-HHHHHHHHHHHHHHTSC--SC-C-CCCS----HHHH----HHHHHHHHHHHHHHSC-CSHHHHHHHHHHH
T ss_pred ccCccHH-H-HHHHHHHHHHHHhccCC--cc-cCCCCc----HHHH----HHHHHHHHHHHHHhcC-CcHHHHHHHHHHH
Confidence 1111111 1 221121 33444433 00 000111 1112 4444555544333211 1222234778899
Q ss_pred HHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcc-------cchhhHHHHHHhh
Q 041545 306 GNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTE-------TMFRPLFIRSIEW 378 (554)
Q Consensus 306 ~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE-------~tFrPLf~kl~~W 378 (554)
.+.|...|. .+..+.+.+.+.++..++.... ......+-.+|-|.-+ ..|-|++.|++.=
T Consensus 726 ~r~i~~lg~-~~~p~lp~~i~~ll~~~~~~e~------------~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~ 792 (980)
T 3ibv_A 726 GRIINVVGP-DMLPKVPQLISILLNSIDMNEL------------VDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSS 792 (980)
T ss_dssp HHHTTTTHH-HHTTTHHHHHHHHHHHCCTTTH------------HHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccH-hHHHHHHHHHHHHHhcCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888 5888999999999964443211 1233334444444443 3456666666654
Q ss_pred hhhccccccccccccchhHHHHHHHHHHHHH-hcchhhccc
Q 041545 379 AESDVEDIGSMKSKSIDRAIVFYSLVNKLAE-SHRSLFVPY 418 (554)
Q Consensus 379 A~~~~~~~~~~~~~~~~R~itfy~l~~~l~e-~LKslftpy 418 (554)
-.....+.+.......-| =+||.|+..+.. ++-++|+.-
T Consensus 793 l~~~~~~td~~r~~~~l~-r~~~~fl~~i~~~~~~~v~~s~ 832 (980)
T 3ibv_A 793 LSAAPQGTDDAVKQNDLR-KSYISFILQLLNKGFGSILFTE 832 (980)
T ss_dssp TTC----CCHHHHHHHHH-HHHHHHHHHHHHTTCTGGGGSH
T ss_pred hcCCCCCcHHHHHHHHHH-HHHHHHHHHHHhCCchhhhcCC
Confidence 332211111000001011 258889888887 778888544
No 35
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.20 E-value=0.42 Score=52.97 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=80.1
Q ss_pred HHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhc
Q 041545 78 SEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSV-FNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALA 156 (554)
Q Consensus 78 ~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~-~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP 156 (554)
+.....+. +.+...|+.+..++..++ ++++. ..-+.+.+.+-++++++-+|+.|+.++|.+.. +.
T Consensus 77 ~~vvkl~~----s~~~~~Krl~YL~l~~~~----~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e--- 142 (621)
T 2vgl_A 77 MEAVNLLS----SNRYTEKQIGYLFISVLV----NSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---RE--- 142 (621)
T ss_dssp HHHHHGGG----CSCHHHHHHHHHHHHHSC----CCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HH---
T ss_pred HHHHHHhc----CCCHHHHHHHHHHHHHHc----cCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HH---
Confidence 44445554 457889999999888776 44453 44556677777888999999999999988743 33
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc--ccHHHHHHH
Q 041545 157 ELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN--PYLGDITEL 221 (554)
Q Consensus 157 ~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls--PYL~~il~~ 221 (554)
+.+.++|.+.+.+.. .+.+..+.-.|+.++.++++.-|..+- .+++.+...
T Consensus 143 ~~~~l~~~v~~~l~~--------------~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~l 195 (621)
T 2vgl_A 143 MAEAFAGEIPKILVA--------------GDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHL 195 (621)
T ss_dssp HHHHHTTHHHHHHHC--------------SSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--------------CCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHH
Confidence 445666776665521 012456778888889999998888776 455555554
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.17 E-value=0.063 Score=59.49 Aligned_cols=258 Identities=12% Similarity=0.104 Sum_probs=149.7
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKAL 155 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~i 155 (554)
.++.|..++. +++.++|-.|+.+|..++...+. .+......+..++.+++..++.-++-++..+++.-.
T Consensus 314 a~~~L~~~L~----~~d~~vr~~aL~~L~~i~~~~p~---~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n---- 382 (618)
T 1w63_A 314 AINILGRFLL----NNDKNIRYVALTSLLKTVQTDHN---AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN---- 382 (618)
T ss_dssp HHHHHHHHHT----CSSTTTHHHHHHHHHHHHHHHHH---HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----
T ss_pred HHHHHHHHHh----CCCCchHHHHHHHHHHHHhhCHH---HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----
Confidence 4556666665 24567888888888888887542 456667778888888888888888888888776322
Q ss_pred chhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChh
Q 041545 156 AELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPK 235 (554)
Q Consensus 156 P~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~ 235 (554)
...+++.+++.+.+ .+..+...++.+++.+..+.+.-...|++.++..+.....+.. .
T Consensus 383 --v~~iv~eL~~~l~~----------------~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~--~-- 440 (618)
T 1w63_A 383 --IRGMMKELLYFLDS----------------CEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVR--D-- 440 (618)
T ss_dssp --THHHHHHHHHHHHH----------------CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSC--S--
T ss_pred --HHHHHHHHHHHHHh----------------CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhH--H--
Confidence 23455555553332 1235778888999999998887778899888877633332211 1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCC
Q 041545 236 LKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRS 315 (554)
Q Consensus 236 ~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~ 315 (554)
.....+++.+. +.| ++ -+..++.+.+....-.. .........-++++.-..+...
T Consensus 441 --~~~~~l~~ii~-~~p-----------------~l----~~~~v~~L~~~l~~~~~-~~~~~~~~~wilGEy~~~i~~~ 495 (618)
T 1w63_A 441 --DAVPNLIQLIT-NSV-----------------EM----HAYTVQRLYKAILGDYS-QQPLVQVAAWCIGEYGDLLVSG 495 (618)
T ss_dssp --SHHHHHHHHHH-HSC-----------------ST----HHHHHHHHHHHHHHCCS-CSHHHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHh-cCh-----------------hH----HHHHHHHHHHHHhcccc-cHHHHHHHHHHHhhhHHHhccc
Confidence 13445544443 344 00 12244444444432111 1111223345555554433211
Q ss_pred c------cccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhcccccccc
Q 041545 316 S------IGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSM 389 (554)
Q Consensus 316 ~------i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~ 389 (554)
. ....-..+.+++...++... +-..+-..+..+++.+..+..+ -++.+.+++.+...+. +
T Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~-d---- 561 (618)
T 1w63_A 496 QCEEEEPIQVTEDEVLDILESVLISNM-------STSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSI-D---- 561 (618)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHSTT-------CCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCS-C----
T ss_pred ccccccccCCCHHHHHHHHHHHHhccC-------CCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCC-C----
Confidence 0 01122334444444333211 1123556677777777777654 3889999998875421 1
Q ss_pred ccccchhHHHHHHHHHH
Q 041545 390 KSKSIDRAIVFYSLVNK 406 (554)
Q Consensus 390 ~~~~~~R~itfy~l~~~ 406 (554)
..-.+|..-|++++..
T Consensus 562 -~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 562 -VELQQRAVEYNALFKK 577 (618)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHcC
Confidence 2578999988887654
No 37
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.05 E-value=0.0036 Score=65.17 Aligned_cols=160 Identities=12% Similarity=0.079 Sum_probs=110.3
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.+|+++++.||..|+..|.+=....+. ....+. ..++.|..+++. +
T Consensus 238 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------------------------~~~~~~~~~~l~~L~~ll~~----~ 288 (450)
T 2jdq_A 238 RLVELLMHNDYKVVSPALRAVGNIVTGDDI-------------------------QTQVILNCSALQSLLHLLSS----P 288 (450)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-------------------------HHHHHHTTTHHHHHHHHTTC----S
T ss_pred HHHHHHCCCchhHHHHHHHHHHHHhhCChH-------------------------HHHHHHHCccHHHHHHHHcC----C
Confidence 467799999999999999999854332210 011111 478888888873 3
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHH
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRK 167 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~ 167 (554)
+..+|..|+.+|..++.........+ ..+++.+++.+.++++.++..+..+++.++....+..+.++ ..++|.++.
T Consensus 289 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ 368 (450)
T 2jdq_A 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD 368 (450)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 67899999999999886221100111 24677777888878899999999999999987555555544 358888888
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-------ccccHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-------LNPYLGDI 218 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-------lsPYL~~i 218 (554)
.++.. +..+...++.+|..++..-+.+ +.||...+
T Consensus 369 ll~~~----------------~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l 410 (450)
T 2jdq_A 369 LLTVM----------------DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALI 410 (450)
T ss_dssp GGGSS----------------CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHH
T ss_pred HhcCC----------------CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHH
Confidence 77541 2347788888888888766543 34666554
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.04 E-value=0.0038 Score=63.19 Aligned_cols=148 Identities=12% Similarity=0.052 Sum_probs=106.7
Q ss_pred hhHH-hhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCC
Q 041545 14 NLYA-SLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGE 90 (554)
Q Consensus 14 ~~~~-ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~ 90 (554)
.|+. ||+++++.||..|...|.+=.+.++. ....+. ..+|.|..+++. +
T Consensus 85 ~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~-------------------------~~~~vv~~g~l~~Ll~LL~~---~ 136 (296)
T 1xqr_A 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA-------------------------IQEQVLGLGALRKLLRLLDR---D 136 (296)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH-------------------------HHHHHHHTTHHHHHHHHHHH---C
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-------------------------HHHHHHHCCCHHHHHHHHcc---C
Confidence 4778 99999999999999999865554331 123333 378888888873 3
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVR 166 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll 166 (554)
.+..+|..|+.||..+++.++.....|. ..++.++..+.+++..++.-+..+++.++.. .+..+.++ ..++|+++
T Consensus 137 ~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHH
Confidence 3567999999999999986643111343 3677788888888999999999999999987 55555555 34788888
Q ss_pred HhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 041545 167 KKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK 206 (554)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~ 206 (554)
..+... +..++..++.+|..++..
T Consensus 216 ~LL~~~----------------d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTE----------------HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSC----------------CSTHHHHHHHHHHHHHTT
T ss_pred HHHcCC----------------ChhHHHHHHHHHHHHHhC
Confidence 877642 123566777777777654
No 39
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.049 Score=51.34 Aligned_cols=153 Identities=13% Similarity=0.170 Sum_probs=114.6
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
+..+|+...=.||+-|+.++.+-.... .+....+...|..+++ .+|...
T Consensus 37 lI~~LDDDlwtV~kNAl~vi~~i~~~~----------------------------~el~epl~~kL~vm~~---ksEaIp 85 (253)
T 2db0_A 37 LIELLDDDLWTVVKNAISIIMVIAKTR----------------------------EDLYEPMLKKLFSLLK---KSEAIP 85 (253)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTC----------------------------GGGHHHHHHHHHHHHH---HCCSHH
T ss_pred HHHHhccHHHHHHHhHHHHHHHHHHHh----------------------------HHHHHHHHHHHHHHHh---hcccCc
Confidence 566899999999999999999554432 3445567777778877 577888
Q ss_pred HHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhh
Q 041545 95 LKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIS 173 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~ 173 (554)
+.|.-..+++.+|+-= | ....+.|.+.....-.++.++...--+++++++.. |..+|.+..-+-.-
T Consensus 86 ltqeIa~a~G~la~i~----Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaran--------P~l~~~v~rdi~sm- 152 (253)
T 2db0_A 86 LTQEIAKAFGQMAKEK----PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--------PMLMASIVRDFMSM- 152 (253)
T ss_dssp HHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHhHHHHhC----HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--------hHHHHHHHHHHHHH-
Confidence 8888888888888653 5 46678888888777778999988888888888764 66666665533320
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 174 TYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 174 ~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
+ .+.+.....+++++++++-++-+..++|||+.++..+
T Consensus 153 -l----------tskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL 190 (253)
T 2db0_A 153 -L----------SSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLL 190 (253)
T ss_dssp -T----------SCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGG
T ss_pred -h----------cCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHH
Confidence 0 0112345788999999999999999999999998864
No 40
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.93 E-value=0.0064 Score=57.76 Aligned_cols=154 Identities=12% Similarity=0.022 Sum_probs=104.7
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCcc
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGESN 92 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~~ 92 (554)
|..+|+++++.+|+.|+..|.+=...... ....+. ..++.|..+++. .+
T Consensus 91 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------------------------~~~~~~~~~~i~~L~~~l~~----~~ 141 (252)
T 4hxt_A 91 LVKLLTSTDSEVQKEAARALANIASGPDE-------------------------AIKAIVDAGGVEVLVKLLTS----TD 141 (252)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTSCHH-------------------------HHHHHHHTTHHHHHHHHTTC----SC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHH-------------------------HHHHHHHCCCHHHHHHHHcC----CC
Confidence 66799999999999999999954322211 122222 468888888873 35
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHHh
Q 041545 93 ISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRKK 168 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~~ 168 (554)
..+|..|+.+|..++...+.....+ ...++.+++.+.++++.++..++.+++.++..-. .....+ ..++|.+++.
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~l 220 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKL 220 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHH
Confidence 6789999999998876422111111 2367778888888899999999999999996322 222222 4577887776
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccccc
Q 041545 169 SREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPY 214 (554)
Q Consensus 169 l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPY 214 (554)
++.. +..+...++.+|..+...-+...-||
T Consensus 221 l~~~----------------~~~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 221 LTST----------------DSEVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp GGCS----------------CHHHHHHHHHHHHHHHHTCBCCC---
T ss_pred HCCC----------------cHHHHHHHHHHHHHHHcCCCcccccc
Confidence 6531 23578889999999998877765544
No 41
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.87 E-value=0.0053 Score=58.89 Aligned_cols=147 Identities=12% Similarity=0.051 Sum_probs=102.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.++.+|+++++.+|+.|...|.+-+..... ....+. ..+|.|..+++. +
T Consensus 16 ~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~-------------------------~~~~~~~~g~i~~L~~lL~~----~ 66 (252)
T 4db8_A 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNE-------------------------QIQAVIDAGALPALVQLLSS----P 66 (252)
T ss_dssp HHHHHHHSSCSSHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHTTHHHHHHHGGGC----S
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCCc-------------------------hHHHHHHcCcHHHHHHHHcC----C
Confidence 467899999999999999999755543211 012222 478999999983 2
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKK 168 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~ 168 (554)
+..+|..|+.+|..++.........+. ..++.+++.+.++++.++..++.+++.++..-..+ ..-.-..++|.+++.
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (252)
T 4db8_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence 477999999999988753221111222 26778888898899999999999999998766555 223334678888887
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 169 SREISTYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 169 l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
+++. +..+...++.+|..+..
T Consensus 147 L~~~----------------~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 147 LSSP----------------NEQILQEALWALSNIAS 167 (252)
T ss_dssp GGCS----------------CHHHHHHHHHHHHHHTT
T ss_pred HhCC----------------CHHHHHHHHHHHHHHHc
Confidence 7541 23467777777777764
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.86 E-value=0.005 Score=57.40 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=101.7
Q ss_pred hhhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCC
Q 041545 12 PVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTG 89 (554)
Q Consensus 12 ~~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~ 89 (554)
|-.|..||+++++.+|+.|+..|.+=...... ....+. ..++.|..++..
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~-------------------------~~~~i~~~g~i~~L~~lL~~--- 65 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNE-------------------------QIQAVIDAGALPALVQLLSS--- 65 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-------------------------HHHHHHHTTHHHHHHHHTTC---
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH-------------------------HHHHHHHcCCHHHHHHHHcC---
Confidence 34577899999999999999999854322221 122333 478889998873
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhc-hhhHHHHHHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALA-ELPLIMENVR 166 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP-~LP~imP~ll 166 (554)
++..+|..|+.+|..++.........+. ..++.+++.+.+++..++..+.-+++.++..-....-. .=..++|.++
T Consensus 66 -~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 144 (210)
T 4db6_A 66 -PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144 (210)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHH
Confidence 3667899999999988742211111121 35777888898889999999999999998643322111 1246788888
Q ss_pred HhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 041545 167 KKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK 206 (554)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~ 206 (554)
+.++.. +..+...++.+|..+...
T Consensus 145 ~ll~~~----------------~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 145 QLLSSP----------------NEQILQEALWALSNIASG 168 (210)
T ss_dssp HHTTCS----------------CHHHHHHHHHHHHHHHTS
T ss_pred HHHcCC----------------CHHHHHHHHHHHHHHHcC
Confidence 877641 235778888888877653
No 43
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.83 E-value=0.13 Score=59.92 Aligned_cols=131 Identities=10% Similarity=0.167 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSR-NLALASSCLRTTGALVN 148 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~-~~~l~~sallcl~~l~~ 148 (554)
.|+|..++|.+..... +. +..+|.+|..+++.++..++++ ....+++.+++.+.+. .|+....++-+++.|++
T Consensus 90 e~~~~~~~~~~~~~~~---dk-~~~v~~aa~~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAG---NK-DKEIQSVASETLISIVNAVNPV--AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHHHTTHHHHHHHTT---CS-SHHHHHHHHHHHHHHHHHSCGG--GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhc---CC-chHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 7888888888777766 33 4579999999999999999863 4578899999888644 69999999999999999
Q ss_pred HhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHH
Q 041545 149 VLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-LNPYLGDITELL 222 (554)
Q Consensus 149 vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-lsPYL~~il~~l 222 (554)
.....+--.||.++|.+.+...+ ...++..++..++.+++..+.+- +.|+++.++.++
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d----------------~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~ 222 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWD----------------TKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCI 222 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTC----------------SSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHH
T ss_pred HhHHHHHHhccchhcchHhhccc----------------CcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHh
Confidence 98777888999999998875544 23457777778888888777755 778888888875
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.76 E-value=0.032 Score=61.35 Aligned_cols=307 Identities=12% Similarity=0.116 Sum_probs=154.5
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|+..|...++.++.+.+++|. ++.. .+.+.-..+++.+..+++. .+.
T Consensus 206 ~Ll~~l~~~~~~~q~~il~~l~-~l~~---------------------------~~~~~~~~~l~~l~~~l~~----~~~ 253 (591)
T 2vgl_B 206 KLLTALNECTEWGQIFILDCLS-NYNP---------------------------KDDREAQSICERVTPRLSH----ANS 253 (591)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH-TSCC---------------------------CSHHHHHHHHHHHTTCSCS----STT
T ss_pred HHHHcCCCCCchHHHHHHHHHH-HhCC---------------------------CChHHHHHHHHHHHHHHcC----CCh
Confidence 3555667788999999999885 2221 1123344567777777663 345
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHH----HHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHH-------
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLAS----VTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIM------- 162 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~----v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~im------- 162 (554)
.++-.|+.++..++...+.....+..++.. .+.. .+++++++-.++.+++.++......+.+++..++
T Consensus 254 ~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~ 332 (591)
T 2vgl_B 254 AVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPI 332 (591)
T ss_dssp HHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCH
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChH
Confidence 677777777766655442222234433333 3333 3578999999999999999886665666654332
Q ss_pred ---HHHHHhhhhhhhhhhhhc----cccc-chhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhccCCCCCCCh
Q 041545 163 ---ENVRKKSREISTYVDVQN----ESNE-DKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDP 234 (554)
Q Consensus 163 ---P~ll~~l~~~~~~~~~~~----~~~~-~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~ 234 (554)
-..+..+-... .+...+ +-.+ ..+.+..+...++.+++.+..+.|....-|++-++..+. .. + +.
T Consensus 333 ~Ir~~al~~L~~l~-~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~-~~----~-~~ 405 (591)
T 2vgl_B 333 YVKLEKLDIMIRLA-SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ-TK----V-NY 405 (591)
T ss_dssp HHHHHHHHHHHHTC-CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TC----C-HH
T ss_pred HHHHHHHHHHHHHC-ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHc-cc----c-hH
Confidence 01111111000 000000 0000 011233466677778888777766555555555555431 11 1 11
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCC
Q 041545 235 KLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDR 314 (554)
Q Consensus 235 ~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~ 314 (554)
........++. +..+.| +. -...++.+.+..+.. ..........-++ +..+.
T Consensus 406 v~~e~i~~l~~-ii~~~p-----------------~~----~~~~v~~L~~~l~~~--~~~~~~~~~~wil----Gey~~ 457 (591)
T 2vgl_B 406 VVQEAIVVIRD-IFRKYP-----------------NK----YESIIATLCENLDSL--DEPDARAAMIWIV----GEYAE 457 (591)
T ss_dssp HHHHHHHHHHH-HHHHSC-----------------SS----CCTTHHHHHHTTTTC--CSHHHHHHHHHHH----HTTCT
T ss_pred HHHHHHHHHHH-HHHHCc-----------------ch----HHHHHHHHHHHHHhc--cCHHHHHHHHHHH----Hcccc
Confidence 22223334422 323344 00 112344454444321 1111222222333 33333
Q ss_pred CccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccc
Q 041545 315 SSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSI 394 (554)
Q Consensus 315 ~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~ 394 (554)
.. ...+.+.+.+++-+ .. +-..+-..++.++..+..+..+.. .|.+.++.+++..+..+ ..-.
T Consensus 458 ~~--~~~~~~l~~l~~~~--------~~-~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~ll~~~~~d~~d-----~evr 520 (591)
T 2vgl_B 458 RI--DNADELLESFLEGF--------HD-ESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQDSDN-----PDLR 520 (591)
T ss_dssp TC--TTHHHHHHHHSTTC--------SS-SCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHHHHHHHTTCCC-----HHHH
T ss_pred cc--cCHHHHHHHHHHhh--------cc-CCHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHhhhcCCC-----hHHH
Confidence 21 12344444443311 11 123456677777777777665432 58999999988643111 1467
Q ss_pred hhHHHHHHHHH
Q 041545 395 DRAIVFYSLVN 405 (554)
Q Consensus 395 ~R~itfy~l~~ 405 (554)
+|+.-|++++.
T Consensus 521 dRA~~y~~ll~ 531 (591)
T 2vgl_B 521 DRGYIYWRLLS 531 (591)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHHC
Confidence 89888777663
No 45
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.70 E-value=0.027 Score=53.34 Aligned_cols=147 Identities=12% Similarity=0.013 Sum_probs=99.1
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.+|+++++.+|+.|+..|.+=...... ....+. ..++.|..+++. +
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~-------------------------~~~~~~~~g~i~~L~~ll~~----~ 56 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPAS-------------------------AIKAIVDAGGVEVLVKLLTS----T 56 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-------------------------HHHHHHHTTHHHHHHHHTTC----S
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcH-------------------------HHHHHHHCCCHHHHHHHHhC----C
Confidence 467899999999999999999854433220 122232 378889998883 3
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKK 168 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~ 168 (554)
+..+|..|+.+|..++..-......+. ..++.+++.+.+++..++..++.+++.++..-... -.-.-...+|.+++.
T Consensus 57 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 578999999999988753211111222 35777888888889999999999999999522111 111114578888887
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 169 SREISTYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 169 l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
+++. +..+...++.+|..+..
T Consensus 137 l~~~----------------~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 137 LTST----------------DSEVQKEAARALANIAS 157 (252)
T ss_dssp TTCS----------------CHHHHHHHHHHHHHHTT
T ss_pred HcCC----------------CHHHHHHHHHHHHHHHc
Confidence 6641 23467778888877765
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.68 E-value=0.078 Score=48.95 Aligned_cols=118 Identities=9% Similarity=0.087 Sum_probs=84.0
Q ss_pred hhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCcc
Q 041545 13 VNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESN 92 (554)
Q Consensus 13 ~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~ 92 (554)
-.++++|.++++.||+.|+..|...- .. ..++.|...+. +++
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~-~~---------------------------------~~~~~L~~~l~----~~~ 58 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIG-DE---------------------------------RAVEPLIKALK----DED 58 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHC-CG---------------------------------GGHHHHHHHTT----CSS
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcC-Ch---------------------------------hHHHHHHHHHc----CCC
Confidence 35778999999999999999998321 10 13577777776 346
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhh
Q 041545 93 ISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREI 172 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~ 172 (554)
..+|..|+.+|..+ |. + ..++.+++.+.++++.+|..++-+++.+.. |..+|.+++.+++
T Consensus 59 ~~vr~~a~~~L~~~----~~--~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d- 118 (201)
T 3ltj_A 59 AWVRRAAADALGQI----GD--E---RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD- 118 (201)
T ss_dssp HHHHHHHHHHHHHH----CC--G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhh----CC--H---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC-
Confidence 77999999888765 32 2 235566677888899999999999988642 4567777776543
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 041545 173 STYVDVQNESNEDKTQRESLMASVLITLEAV 203 (554)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~l 203 (554)
.+..+...++.+++.+
T Consensus 119 ---------------~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 119 ---------------EDWFVRIAAAFALGEI 134 (201)
T ss_dssp ---------------SSHHHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHh
Confidence 1234677777777665
No 47
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.60 E-value=0.037 Score=59.56 Aligned_cols=149 Identities=9% Similarity=0.076 Sum_probs=99.7
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|+.+|+++++.||+.|+..|.+=...... ..........+|.|..++.. ++.
T Consensus 219 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-----------------------~~~~~~~~~~l~~L~~lL~~----~d~ 271 (530)
T 1wa5_B 219 PILGLFNSNKPSLIRTATWTLSNLCRGKKP-----------------------QPDWSVVSQALPTLAKLIYS----MDT 271 (530)
T ss_dssp HHHHGGGSCCHHHHHHHHHHHHHHHCCSSS-----------------------CCCHHHHGGGHHHHHHHTTC----CCH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHhCCCCC-----------------------CCcHHHHHhHHHHHHHHHcC----CCH
Confidence 366789999999999999999854433211 01133445688888888873 356
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh-hHHHHHHHHhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL-PLIMENVRKKSR 170 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L-P~imP~ll~~l~ 170 (554)
.++..|+.+|..++...+.....+. .+++.+++.+.+.++.++..++.+++.++..-....-..+ ..++|.++..++
T Consensus 272 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 272 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc
Confidence 8999999999999853221111111 4567788888888999999999999999864433222212 467788887765
Q ss_pred hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 171 EISTYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
.. +..+...++.+|+.+..
T Consensus 352 ~~----------------~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 352 SP----------------KENIKKEACWTISNITA 370 (530)
T ss_dssp CS----------------CHHHHHHHHHHHHHHTT
T ss_pred CC----------------CHHHHHHHHHHHHHHHc
Confidence 41 23456677777776654
No 48
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.51 E-value=0.013 Score=56.06 Aligned_cols=147 Identities=13% Similarity=0.043 Sum_probs=100.8
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.+|+++++.+|+.|+..|.+=...... ....+. ..++.|..+++. +
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------------------~~~~i~~~g~i~~L~~lL~~----~ 108 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNE-------------------------QIQAVIDAGALPALVQLLSS----P 108 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-------------------------HHHHHHHTTHHHHHHHGGGC----S
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-------------------------HHHHHHHcCCHHHHHHHHcC----C
Confidence 467899999999999999999844332221 122333 378889998883 3
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhh-chhhHHHHHHHHh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKAL-AELPLIMENVRKK 168 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~i-P~LP~imP~ll~~ 168 (554)
+..+|..|+.+|..++.........+ ...++.+++.+.++++.++..++.+++.++..-....- -.-..++|.++..
T Consensus 109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 188 (252)
T 4db8_A 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 67899999999998865332110111 13677888889888999999999999999964322211 1125678888887
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 169 SREISTYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 169 l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
++.. +..+...++.+|..+..
T Consensus 189 l~~~----------------~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 189 LSSP----------------NEQILQEALWALSNIAS 209 (252)
T ss_dssp GGCS----------------SHHHHHHHHHHHHHHTT
T ss_pred HCCC----------------CHHHHHHHHHHHHHHhc
Confidence 7641 23467778888877764
No 49
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.51 E-value=0.015 Score=62.49 Aligned_cols=150 Identities=11% Similarity=0.037 Sum_probs=107.8
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.+|.++++.||..|+..|.+=...... ....+. ..+|.|..++.. ..
T Consensus 290 ~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~-------------------------~~~~~~~~~~l~~L~~lL~~---~~ 341 (528)
T 4b8j_A 290 RLVELLLHPSPSVLIPALRTVGNIVTGDDA-------------------------QTQCIIDHQALPCLLSLLTQ---NL 341 (528)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-------------------------HHHHHHTTTHHHHHHHHHHS---CC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHcCCHH-------------------------HHHHHHHhhhHHHHHHHHcC---CC
Confidence 567799999999999999999854432211 011111 368888888873 33
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCC--chHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHH
Q 041545 92 NISLKLTAVSTLEVLANRFASYD--SVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENV 165 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~--~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~l 165 (554)
+..+|..|..+|.-|+. |... ..+. .+++.+++.+.+.+..++..++.+++.++..-.+....++ ..++|.+
T Consensus 342 ~~~v~~~A~~~L~nl~~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 342 KKSIKKEACWTISNITA--GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp CHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHC--CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 67899999999999986 2211 1111 4567777888778899999999999999998667777777 5788888
Q ss_pred HHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 041545 166 RKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG 209 (554)
Q Consensus 166 l~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~ 209 (554)
+..+... +..+...++.+|..++..-+.
T Consensus 420 ~~lL~~~----------------d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 420 CDLLICP----------------DIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHGGGCS----------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 8877641 234677888888888776544
No 50
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.49 E-value=0.014 Score=62.85 Aligned_cols=151 Identities=10% Similarity=0.016 Sum_probs=105.4
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.+|.++++.||..|+..|.+=....+. ....+. ..++.|..++.. .
T Consensus 303 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------------------~~~~~~~~~~l~~L~~lL~~----~ 353 (530)
T 1wa5_B 303 RLVELLSHESTLVQTPALRAVGNIVTGNDL-------------------------QTQVVINAGVLPALRLLLSS----P 353 (530)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-------------------------HHHHHHHTTHHHHHHHHTTC----S
T ss_pred HHHHHHCCCChhhHHHHHHHHHHHHcCCHH-------------------------HHHHHHHcchHHHHHHHHcC----C
Confidence 477799999999999999999854332110 111222 478888888883 2
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhch--hhhchhhH--HHHHH
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNVLGL--KALAELPL--IMENV 165 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~--~~iP~LP~--imP~l 165 (554)
+..+|..|+.+|..++.........+ ..+++.+++.+.+++..++..++.+++.++...++ ..+.++-. ++|.+
T Consensus 354 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L 433 (530)
T 1wa5_B 354 KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 433 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHH
Confidence 67899999999999886221100111 13566777777778899999999999999998665 55555544 88888
Q ss_pred HHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Q 041545 166 RKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGG 209 (554)
Q Consensus 166 l~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~ 209 (554)
+..++.. +..+...++.+|..++..-+.
T Consensus 434 ~~ll~~~----------------~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 434 CDLLEIA----------------DNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHTTTC----------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC----------------CHHHHHHHHHHHHHHHHhhhh
Confidence 8866541 234677888888888876554
No 51
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.46 E-value=0.026 Score=52.36 Aligned_cols=146 Identities=14% Similarity=0.060 Sum_probs=97.3
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.+|+++++.+|+.|+..|.+=...... ....+. ..+|.|..+++. .
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------------------~~~~i~~~g~i~~L~~lL~~----~ 108 (210)
T 4db6_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNE-------------------------QIQAVIDAGALPALVQLLSS----P 108 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-------------------------HHHHHHHTTCHHHHHHHTTC----S
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcH-------------------------HHHHHHHCCCHHHHHHHHcC----C
Confidence 367799999999999999999854322221 122222 378888888873 3
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhch-hhhchhhHHHHHHHHh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNVLGL-KALAELPLIMENVRKK 168 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~-~~iP~LP~imP~ll~~ 168 (554)
+..+|..|+.+|..++.........+ ...++.+++.+.+++..++..++.+++.++..-.. +..-.-...+|.+++.
T Consensus 109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l 188 (210)
T 4db6_A 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHH
Confidence 57899999999999886221100111 23677788888888999999999999999975222 2222234577777776
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 041545 169 SREISTYVDVQNESNEDKTQRESLMASVLITLEAVI 204 (554)
Q Consensus 169 l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv 204 (554)
++.. +..+...++.+|..+.
T Consensus 189 l~~~----------------~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 189 QSHE----------------NEKIQKEAQEALEKLQ 208 (210)
T ss_dssp GGCS----------------CHHHHHHHHHHHHHHC
T ss_pred HhCC----------------CHHHHHHHHHHHHHHh
Confidence 6531 2346677777776553
No 52
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.42 E-value=0.031 Score=54.63 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=15.9
Q ss_pred hhHHhhhcCChhHHHHHHHHHH
Q 041545 14 NLYASLFNGEICTCEQALGLLC 35 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~ 35 (554)
.|+.+|+++++.||+.|...|.
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~ 48 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQ 48 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777777777777777776
No 53
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.30 E-value=0.032 Score=51.62 Aligned_cols=117 Identities=10% Similarity=0.108 Sum_probs=83.8
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|..+|+++++.||+.|+..|..- ... ..++.|...+. +++.
T Consensus 49 ~L~~~l~~~~~~vr~~a~~~L~~~-~~~---------------------------------~~~~~L~~~l~----d~~~ 90 (201)
T 3ltj_A 49 PLIKALKDEDAWVRRAAADALGQI-GDE---------------------------------RAVEPLIKALK----DEDG 90 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHH-CCG---------------------------------GGHHHHHHHTT----CSSH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhh-CCH---------------------------------HHHHHHHHHHc----CCCH
Confidence 467789999999999999999832 110 13566666666 3477
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIS 173 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~ 173 (554)
.+|..|+.+|..+ |. + ..++.+++.+.++++.+|..++.++|.+.. |..+|.++..+++.
T Consensus 91 ~vr~~a~~aL~~~----~~--~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~- 150 (201)
T 3ltj_A 91 WVRQSAAVALGQI----GD--E---RAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE- 150 (201)
T ss_dssp HHHHHHHHHHHHH----CC--G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS-
T ss_pred HHHHHHHHHHHHh----Cc--H---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC-
Confidence 8999999998875 32 2 235556677888899999999999998742 56777777766531
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 041545 174 TYVDVQNESNEDKTQRESLMASVLITLEAV 203 (554)
Q Consensus 174 ~~~~~~~~~~~~~d~~~~l~~s~lsaL~~l 203 (554)
+..+...++.+|..+
T Consensus 151 ---------------~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 151 ---------------DGWVRQSAADALGEI 165 (201)
T ss_dssp ---------------SHHHHHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHh
Confidence 234677777777666
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.24 E-value=0.032 Score=52.05 Aligned_cols=117 Identities=9% Similarity=0.093 Sum_probs=83.9
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|..+|+++++.+|+.|+..|...- .. ..++.|...+. +++.
T Consensus 23 ~L~~~L~~~~~~vR~~A~~~L~~~~-~~---------------------------------~~~~~L~~~l~----~~~~ 64 (211)
T 3ltm_A 23 MYIKNLQDDSYYVRRAAAYALGKIG-DE---------------------------------RAVEPLIKALK----DEDA 64 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC-CG---------------------------------GGHHHHHHHTT----CSCH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC-Cc---------------------------------cHHHHHHHHHc----CCCH
Confidence 4777999999999999999998321 10 14567777776 3477
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIS 173 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~ 173 (554)
.+|..|+.+|..+. . + ..++.+++.+.++++.+|..++.+++.+.. |..+|.+++.+++
T Consensus 65 ~vr~~a~~aL~~~~----~--~---~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-- 123 (211)
T 3ltm_A 65 WVRRAAADALGQIG----D--E---RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD-- 123 (211)
T ss_dssp HHHHHHHHHHHHHC----C--G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhhC----C--H---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC--
Confidence 89999999887763 2 2 234566677888899999999999988742 4567777776643
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 041545 174 TYVDVQNESNEDKTQRESLMASVLITLEAV 203 (554)
Q Consensus 174 ~~~~~~~~~~~~~d~~~~l~~s~lsaL~~l 203 (554)
.+..+...++.+|+.+
T Consensus 124 --------------~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 124 --------------EDWFVRIAAAFALGEI 139 (211)
T ss_dssp --------------SSHHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHc
Confidence 1234677777777665
No 55
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.063 Score=52.98 Aligned_cols=150 Identities=13% Similarity=0.126 Sum_probs=98.0
Q ss_pred hhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHH
Q 041545 18 SLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKL 97 (554)
Q Consensus 18 ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq 97 (554)
.+..+...|..+++++|+.=+..-..... ...........++|.|..= .-.+....+|+
T Consensus 63 ~l~DsN~~v~~~al~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~lveK---~l~~~k~~~~~ 121 (278)
T 4ffb_C 63 YITDSNVVAQEQAIVALNSLIDAFASSSL------------------KNAHNITLISTWTPLLVEK---GLTSSRATTKT 121 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCC---C------------------CHHHHHHHHHHHHHHHHHH---TSSCCCHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhhc------------------ccchhHHHHHHHHHHHHHH---HhcCccHHHHH
Confidence 45567788999999999866554331000 0000122333444544431 11244667899
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhc---hhhHHHHHHHHhhhhhhh
Q 041545 98 TAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALA---ELPLIMENVRKKSREIST 174 (554)
Q Consensus 98 ~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP---~LP~imP~ll~~l~~~~~ 174 (554)
.|+.++-.++...+. ...++..+..++++.++.++..++.+++.+.+.+|...++ .++.+++.+.+.+.+
T Consensus 122 ~a~~~l~~~~~~~~~----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d--- 194 (278)
T 4ffb_C 122 QSMSCILSLCGLDTS----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH--- 194 (278)
T ss_dssp HHHHHHHHHHHTSSS----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC---
T ss_pred HHHHHHHHHHHhcCc----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC---
Confidence 999999888876653 2234566677888899999999999999999999998765 566677766665543
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Q 041545 175 YVDVQNESNEDKTQRESLMASVLITLEAVIDKLG 208 (554)
Q Consensus 175 ~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~ 208 (554)
.+..+-.++..++..+...+|
T Consensus 195 -------------~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 195 -------------GDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp -------------SSHHHHHHHHHHHHHHHTC--
T ss_pred -------------CcHHHHHHHHHHHHHHHHHhC
Confidence 245577778888877776665
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.07 E-value=0.044 Score=51.12 Aligned_cols=117 Identities=10% Similarity=0.121 Sum_probs=83.3
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|..+|+++++.||..|+..|..- ... ..++.|...++ +++.
T Consensus 54 ~L~~~l~~~~~~vr~~a~~aL~~~-~~~---------------------------------~~~~~L~~~l~----~~~~ 95 (211)
T 3ltm_A 54 PLIKALKDEDAWVRRAAADALGQI-GDE---------------------------------RAVEPLIKALK----DEDG 95 (211)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHH-CCG---------------------------------GGHHHHHHHTT----CSSH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhh-CCH---------------------------------HHHHHHHHHHc----CCCH
Confidence 467799999999999999999832 110 13466666665 3467
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIS 173 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~ 173 (554)
.+|..|+.+|..+ |. + ..++.+++.+.++++.++..++.++|.+.. |..+|.++..+++
T Consensus 96 ~vr~~a~~aL~~~----~~--~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-- 154 (211)
T 3ltm_A 96 WVRQSAAVALGQI----GD--E---RAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKD-- 154 (211)
T ss_dssp HHHHHHHHHHHHH----CC--G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHh----Cc--H---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcC--
Confidence 8999999999866 32 2 245666777888999999999999998732 4567777776643
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHH
Q 041545 174 TYVDVQNESNEDKTQRESLMASVLITLEAV 203 (554)
Q Consensus 174 ~~~~~~~~~~~~~d~~~~l~~s~lsaL~~l 203 (554)
.+..+...++.+|..+
T Consensus 155 --------------~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 155 --------------EDGWVRQSAADALGEI 170 (211)
T ss_dssp --------------SSHHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHh
Confidence 1234667777777665
No 57
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.077 Score=52.30 Aligned_cols=169 Identities=13% Similarity=0.099 Sum_probs=108.2
Q ss_pred hhhcchhhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhcc
Q 041545 7 QLSVAPVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDN 86 (554)
Q Consensus 7 ~~~~~~~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~ 86 (554)
..+-.| |-+-|.+..=..|..|++-|..-++..... ..++.....|..+++.+..++.
T Consensus 8 d~sklp--l~e~l~sk~WK~R~eale~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~lkk~l~- 65 (278)
T 4ffb_C 8 DYTTLP--LEERLTYKLWKARLEAYKELNQLFRNSVGD-------------------ISRDDNIQIYWRDPTLFAQYIT- 65 (278)
T ss_dssp ---CCC--HHHHTTCSSHHHHHHHHHHHHHHHHTC-----------------------------CCTTSCTHHHHHHTT-
T ss_pred hhhcCC--HHHhcccCcHHHHHHHHHHHHHHHhhCccc-------------------ccchhHHHHHHHHHHHHHHHhc-
Confidence 345556 568899999999999999998777654321 1112222334555666667665
Q ss_pred CCCCccHhHHHHHHHHHHHHHHHhCCCC-------chHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHhchhhhchh
Q 041545 87 STGESNISLKLTAVSTLEVLANRFASYD-------SVFNLCLASVTN-SISSRNLALASSCLRTTGALVNVLGLKALAEL 158 (554)
Q Consensus 87 ~~~~~~~~lrq~Al~~L~~lA~~~g~~~-------~~~~~~L~~v~~-~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L 158 (554)
+.+..+.+.|+.++..++..+|... .....+++.+++ ++++....++..++-|+-.++...+. .
T Consensus 66 ---DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~ 137 (278)
T 4ffb_C 66 ---DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----I 137 (278)
T ss_dssp ---CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----S
T ss_pred ---cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----H
Confidence 4577899999999999999888652 124456776665 47888899999999999888865542 2
Q ss_pred hHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc---ccHHHHHHH
Q 041545 159 PLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN---PYLGDITEL 221 (554)
Q Consensus 159 P~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls---PYL~~il~~ 221 (554)
..+++.++..+++ .+..+..+++..|..+++.+|.-.. |.+..++..
T Consensus 138 ~~~~e~l~~~l~~----------------Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~ 187 (278)
T 4ffb_C 138 TQSVELVIPFFEK----------------KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKH 187 (278)
T ss_dssp HHHHHHHGGGGGC----------------SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhc----------------cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHH
Confidence 3344444444433 1345778889999999998775432 345555443
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.86 E-value=0.12 Score=50.45 Aligned_cols=101 Identities=7% Similarity=0.082 Sum_probs=65.1
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHhchhh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTN-SISSRNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~-~l~~~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
.++.|...++ +++..+|..|+.+|..+ |.....+..+++.+.+ .++++++.+|..++.++|.++....
T Consensus 55 ~~~~L~~~l~----d~~~~vR~~A~~aL~~l----~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--- 123 (280)
T 1oyz_A 55 AVRLAIEFCS----DKNYIRRDIGAFILGQI----KICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP--- 123 (280)
T ss_dssp HHHHHHHHHT----CSSHHHHHHHHHHHHHS----CCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHh----ccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---
Confidence 5677777776 34667898888888654 4322345555665553 4567788999999999998876442
Q ss_pred hchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 041545 155 LAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVI 204 (554)
Q Consensus 155 iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv 204 (554)
++-|.++|.++..+++. +..+..+++.+++.+-
T Consensus 124 -~~~~~~~~~L~~~l~d~----------------~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 124 -IYSPKIVEQSQITAFDK----------------STNVRRATAFAISVIN 156 (280)
T ss_dssp -GGHHHHHHHHHHHTTCS----------------CHHHHHHHHHHHHTC-
T ss_pred -cccHHHHHHHHHHhhCC----------------CHHHHHHHHHHHHhcC
Confidence 34567777777766531 2345666666665543
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.67 E-value=0.33 Score=56.64 Aligned_cols=124 Identities=11% Similarity=0.172 Sum_probs=102.9
Q ss_pred HHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhc
Q 041545 75 KMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASY---DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLG 151 (554)
Q Consensus 75 ~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~---~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg 151 (554)
.+...|...+..+. +. ..|+.++..||+.+|.. .|++.++++.+.+...+....|+..+-.+..+++..+.
T Consensus 54 ~~~~~~~~~~~~k~---~~---~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~ 127 (986)
T 2iw3_A 54 HFFGELAKGIKDKK---TA---ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127 (986)
T ss_dssp HHHHHHHHHHTSHH---HH---HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHhccC---CH---HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC
Confidence 57777788777421 22 88999999999999875 35788899999999998889999999999999999999
Q ss_pred hhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 152 LKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 152 ~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
+.++ +.++|.+++.++... .| ....+++.++..+++..|.-++-+|++|+-.+
T Consensus 128 ~~a~---~~~~~~~~~~~~~~~--------------kw-~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 128 PVAI---KALLPHLTNAIVETN--------------KW-QEKIAILAAFSAMVDAAKDQVALRMPELIPVL 180 (986)
T ss_dssp GGGH---HHHHHHHHHHHHHCC--------------CH-HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHhcccc--------------ch-HHHHHHHHHHHHHHHHhHHHHHHhccchhcch
Confidence 9987 788999998775421 12 35688999999999999999999999999876
No 60
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.65 E-value=0.34 Score=48.09 Aligned_cols=162 Identities=13% Similarity=0.082 Sum_probs=113.8
Q ss_pred cchhhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCC
Q 041545 10 VAPVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTG 89 (554)
Q Consensus 10 ~~~~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~ 89 (554)
..+..+...|++.+..-|.+|++.|++.+.+.. ......+.-+..|+...--
T Consensus 46 ~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~----------------------------~~~~~~lDll~kw~~lr~~ 97 (266)
T 2of3_A 46 QAKVSLMSQLFHKDFKQHLAALDSLVRLADTSP----------------------------RSLLSNSDLLLKWCTLRFF 97 (266)
T ss_dssp TBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCH----------------------------HHHHHTHHHHHHHHHHHTT
T ss_pred hccHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh----------------------------HHHHHHHHHHHHHHHHHHh
Confidence 356788889999999999999999998765422 2222333334444431112
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCCC----c-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASYD----S-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMEN 164 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~~----~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ 164 (554)
+.+..+-+.+++.|..+..+++... . .....+|.+++.++....++|..+--++-.++.++.+ .++++.
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~ 171 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPM 171 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHH
Confidence 3477788899999999888886542 2 3567889999999999999999999988888877543 346777
Q ss_pred HHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccH---HHHHHH
Q 041545 165 VRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYL---GDITEL 221 (554)
Q Consensus 165 ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL---~~il~~ 221 (554)
+++.++.- +-..-..++..+..+++..|.-...++ +.|...
T Consensus 172 l~~g~ksK----------------N~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~l 215 (266)
T 2of3_A 172 LLDALKSK----------------NARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPF 215 (266)
T ss_dssp HHHGGGCS----------------CHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGG
T ss_pred HHHHHccC----------------CHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHH
Confidence 77766541 234667788888888888876645566 555544
No 61
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.55 E-value=0.18 Score=55.89 Aligned_cols=108 Identities=6% Similarity=-0.037 Sum_probs=80.0
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHh--cCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSI--SSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVR 166 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l--~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll 166 (554)
+.+...|..|+.+|..+.. | ....+++.+.+++ .+.++.||-.|++|+..+.+ ..++.+|. +.+++.+.
T Consensus 122 ~~n~~ir~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~-~~p~~~~~-~~~~~~l~ 193 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGS------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR-TSPDLVPM-GDWTSRVV 193 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HCGGGCCC-CSCHHHHH
T ss_pred CCCHHHHHHHHHHhhccCC------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-hChhhcCc-hhHHHHHH
Confidence 4466689999999888732 4 4667778888999 78899999999999999999 56777775 67777777
Q ss_pred HhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Q 041545 167 KKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITEL 221 (554)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~ 221 (554)
+.+.+ .+..+..++++++..+..+-|..+.|+++.++..
T Consensus 194 ~lL~d----------------~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~ 232 (621)
T 2vgl_A 194 HLLND----------------QHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSR 232 (621)
T ss_dssp HHTTC----------------SCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHH
T ss_pred HHhCC----------------CCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 65543 1234788888888888887766555555555443
No 62
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.31 E-value=0.24 Score=49.85 Aligned_cols=107 Identities=13% Similarity=0.056 Sum_probs=80.8
Q ss_pred hhHHhhhc-CChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCC
Q 041545 14 NLYASLFN-GEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGE 90 (554)
Q Consensus 14 ~~~~ll~~-~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~ 90 (554)
.|+.||++ +++.||++|+..|.+=...... ....|. ..+|.|..+++.
T Consensus 128 ~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~-------------------------~~~~~~~~ggi~~L~~lL~~---- 178 (296)
T 1xqr_A 128 KLLRLLDRDACDTVRVKALFAISCLVREQEA-------------------------GLLQFLRLDGFSVLMRAMQQ---- 178 (296)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH-------------------------HHHHHHHTTHHHHHHHHHHS----
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCcH-------------------------HHHHHHHCCCHHHHHHHHcC----
Confidence 46779986 5899999999999965544321 123444 378888888872
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNV 149 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~v 149 (554)
.+..+|..|..+|.-++.........+. .+++.+++.+.+++..++..++.+++.++..
T Consensus 179 ~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 3678999999999999987322112343 3778888999989999999999999999987
No 63
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.24 E-value=0.73 Score=52.38 Aligned_cols=131 Identities=13% Similarity=0.057 Sum_probs=87.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|..+|.++++.||++|+..|.+=...... ++ ........++.|..++. .+++.
T Consensus 154 ~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~---~~--------------------~i~~~~~~i~~Lv~~L~---~~~d~ 207 (780)
T 2z6g_A 154 ELTKLLNDEDQVVVNKAAVMVHQLSKKEAS---RH--------------------AIMRSPQMVSAIVRTMQ---NTNDV 207 (780)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTSHHH---HH--------------------HHTTCHHHHHHHHHHHH---HCCCH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhCCChh---HH--------------------HHHhccChHHHHHHHHc---CCCCH
Confidence 356688889999999999988842222110 00 00001246788888887 34577
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh-hHHHHHHHHhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL-PLIMENVRKKSR 170 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L-P~imP~ll~~l~ 170 (554)
..|..|+.+|..++..-.. ...+ ...++.+++.+.+++..++..++.+|+.++.......-... ..++|.+++.++
T Consensus 208 ~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~ 286 (780)
T 2z6g_A 208 ETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 286 (780)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh
Confidence 8999999999988753211 1111 14677788889888999999999999999987544332222 567888888776
Q ss_pred h
Q 041545 171 E 171 (554)
Q Consensus 171 ~ 171 (554)
.
T Consensus 287 ~ 287 (780)
T 2z6g_A 287 K 287 (780)
T ss_dssp C
T ss_pred c
Confidence 4
No 64
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.17 E-value=0.0046 Score=54.04 Aligned_cols=99 Identities=7% Similarity=0.056 Sum_probs=67.4
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
+..+|+++++.||+.|+..|.. +.+.. ++.|...++ +++..
T Consensus 17 l~~~L~~~~~~vR~~A~~~L~~----------------------------~~~~~-------~~~L~~~L~----d~~~~ 57 (131)
T 1te4_A 17 RGSHMADENKWVRRDVSTALSR----------------------------MGDEA-------FEPLLESLS----NEDWR 57 (131)
T ss_dssp ----CCSSCCCSSSSCCSSTTS----------------------------CSSTT-------HHHHHHGGG----CSCHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHH----------------------------hCchH-------HHHHHHHHc----CCCHH
Confidence 5568888899999988877761 11111 366777776 35788
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhh
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~ 171 (554)
+|..|+.+|+.+. . ...++.+++.+.++++.||..++.++|.+.. |..+|.+++.+++
T Consensus 58 vR~~A~~aL~~~~----~-----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d 115 (131)
T 1te4_A 58 IRGAAAWIIGNFQ----D-----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAET 115 (131)
T ss_dssp HHHHHHHHHGGGC----S-----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcC----C-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC
Confidence 9999999887653 1 2345666667777899999999999998742 5677777776643
No 65
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.03 E-value=0.18 Score=55.78 Aligned_cols=129 Identities=11% Similarity=0.015 Sum_probs=89.1
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHH--HHHHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFES--FRKMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f~~l~~~L~~il~~~~~~~ 91 (554)
.|..+|+++++.||++|+..|.+=..+... + ... ....++.|..++. .++
T Consensus 18 ~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~---~----------------------~~i~~~~~~i~~Lv~~L~---~~~ 69 (644)
T 2z6h_A 18 ELTKLLNDEDQVVVNKAAVMVHQLSKKEAS---R----------------------HAIMRSPQMVSAIVRTMQ---NTN 69 (644)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSTTH---H----------------------HHHTTCHHHHHHHHHHHH---SCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHCCChh---H----------------------HHHHhccChHHHHHHHHh---cCC
Confidence 467799999999999999999854433221 0 011 1256788888887 345
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh-hHHHHHHHHh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL-PLIMENVRKK 168 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L-P~imP~ll~~ 168 (554)
+...|..|+.+|..++..... ...+. ..++.+++.+++++..++..++.+++.++..-....-... ..++|.+++.
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHH-HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcChhh-HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 678899999998877653210 11121 3677788889888999999999999999987533322222 5678888887
Q ss_pred hhh
Q 041545 169 SRE 171 (554)
Q Consensus 169 l~~ 171 (554)
++.
T Consensus 149 L~~ 151 (644)
T 2z6h_A 149 LNK 151 (644)
T ss_dssp GGC
T ss_pred HCc
Confidence 765
No 66
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.77 E-value=1.6 Score=52.11 Aligned_cols=175 Identities=9% Similarity=0.044 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHhC--CCCchHH-HHHHHHHHH-h--cCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANRFA--SYDSVFN-LCLASVTNS-I--SSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRK 167 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g--~~~~~~~-~~L~~v~~~-l--~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~ 167 (554)
...-+....++.+++.+- .+.+... .+++.+++. + ...++.++..++.|+|++++-+..+ =.+||.++..++.
T Consensus 501 ~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~-p~~L~~vL~~ll~ 579 (1204)
T 3a6p_A 501 VQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR-PEFLPQVFSKLFS 579 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence 344555666777777661 2112111 233444433 2 2357889999999999999887743 3577777777777
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL-VLCPEYLPGSDPKLKVKADAVRRL 246 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l-~l~~~~~~~~~~~~~s~~~~l~~~ 246 (554)
.+.... .+. .. ....+..+.+..++++++..+.+..|..|.||+++|...+ .....+..-.+.....-..++ -.
T Consensus 580 ~l~~~~-~~~-~~--~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal-~~ 654 (1204)
T 3a6p_A 580 SVTFET-VEE-SK--APRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEAL-VL 654 (1204)
T ss_dssp HHHCCT-TCS-TT--SCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHH-HH
T ss_pred hhccCC-ccc-cc--ccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHH-HH
Confidence 654311 000 00 0011246679999999999999999999999999999876 222221100122222333344 33
Q ss_pred HHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhh
Q 041545 247 LTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSG 289 (554)
Q Consensus 247 la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~ 289 (554)
++..++ -+... ..+++.+++++.+.|.+
T Consensus 655 ia~~~~-----------~~~~~----~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 655 ISNQFK-----------NYERQ----KVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHGGGC-----------CHHHH----HHHHHHHHHHHHHHHSC
T ss_pred HhccCC-----------CHHHH----HHHHHHHHHHHHHHHcc
Confidence 344443 12222 23388899999999974
No 67
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.69 E-value=0.25 Score=52.34 Aligned_cols=128 Identities=11% Similarity=0.032 Sum_probs=86.8
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHH-H--HHHHHHHHHhhccCCCC
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFES-F--RKMCSEVVLLVDNSTGE 90 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f--~~l~~~L~~il~~~~~~ 90 (554)
.|..+|+++++.+|++|...|.+=..+.. .... + ...++.|..++. .+
T Consensus 21 ~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~--------------------------~~~~~~~~~~~i~~Lv~~L~---~~ 71 (529)
T 1jdh_A 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEA--------------------------SRHAIMRSPQMVSAIVRTMQ---NT 71 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHH--------------------------HHHHHHTCHHHHHHHHHHHH---HC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHcCCc--------------------------cHHHHHhCcchHHHHHHHHh---cC
Confidence 46779999999999999999984332211 0111 1 246788888886 34
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh-hchhhHHHHHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA-LAELPLIMENVRK 167 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~-iP~LP~imP~ll~ 167 (554)
++...|..|+.+|..++..-.. ...+. ..++.+++.+.++++.++..++-+++.++..-...- .=.=...+|.+++
T Consensus 72 ~~~~~~~~a~~~L~~ls~~~~~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 150 (529)
T 1jdh_A 72 NDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 150 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence 4778899999999887653110 11122 367778888888899999999999999998643221 1112467888888
Q ss_pred hhhh
Q 041545 168 KSRE 171 (554)
Q Consensus 168 ~l~~ 171 (554)
.+++
T Consensus 151 ll~~ 154 (529)
T 1jdh_A 151 LLNK 154 (529)
T ss_dssp GGGC
T ss_pred HHhc
Confidence 7765
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.66 E-value=0.52 Score=45.94 Aligned_cols=143 Identities=11% Similarity=0.081 Sum_probs=105.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|.+||+..|+.|+-+||-.|.+=++..+. .-.......+++.+..++.. ++-
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~-----------------------~l~~~~~e~~Ld~iI~llk~----~dE 89 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADS-----------------------DLRMMVLERHLDVFINALSQ----ENE 89 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCH-----------------------HHHHHHHHHHHHHHHHTCCS----TTH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccc-----------------------cccHHHHHHHHHHHHHHHhc----cch
Confidence 366799999999999999999988877442 22356777888999888863 233
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIS 173 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~ 173 (554)
-+.-.|+-||+.+-...+-....|..++...++.+.+.++.++..+.=.+|.+ +.....|+++..+...+++
T Consensus 90 kval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~S-- 161 (265)
T 3b2a_A 90 KVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVS-- 161 (265)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhC--
Confidence 45556778888888877764447999999999999988888888777666665 5555678888888887743
Q ss_pred hhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 174 TYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 174 ~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
.+-.++.++++++..+..
T Consensus 162 --------------kd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 162 --------------PDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp --------------SSHHHHHHHHHHHHHHGG
T ss_pred --------------CChhHHHHHHHHHHHhhc
Confidence 134567777777755544
No 69
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.22 E-value=0.18 Score=54.32 Aligned_cols=148 Identities=10% Similarity=0.031 Sum_probs=101.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.||.+++..|+..|+..|.+=+...+. ....+. ..++.|..++. +.
T Consensus 297 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~-------------------------~~~~i~~~g~l~~L~~LL~----~~ 347 (529)
T 3tpo_A 297 QLVKLLGATELPIVTPALRAIGNIVTGTDE-------------------------QTQKVIDAGALAVFPSLLT----NP 347 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-------------------------HHHHHHHTTGGGGHHHHTT----CS
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHccchH-------------------------HHHHHhhcccHHHHHHHHc----CC
Confidence 477899999999999999999865433221 011111 36677788877 33
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHH
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRK 167 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~ 167 (554)
+..+|..|..+|.-|+..-......+. .+++.++..+.+++..++..+..+++.++..-..+-+.+| ..++|+++.
T Consensus 348 ~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~ 427 (529)
T 3tpo_A 348 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 427 (529)
T ss_dssp SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHH
Confidence 567899999999888752211001111 3677788888889999999999999999987666655555 346888888
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK 206 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~ 206 (554)
.|+.. +..+...++.+|..+++.
T Consensus 428 LL~~~----------------d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 428 LLSAK----------------DTKIIQVILDAISNIFQA 450 (529)
T ss_dssp GGGCS----------------CHHHHHHHHHHHHHHHHH
T ss_pred HhcCC----------------CHHHHHHHHHHHHHHHHH
Confidence 77541 234666777777777653
No 70
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.83 E-value=0.32 Score=48.26 Aligned_cols=85 Identities=8% Similarity=0.080 Sum_probs=67.2
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHH---HHHHHHhcCCChhHHHHHHHHHHHHHHHhch
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCL---ASVTNSISSRNLALASSCLRTTGALVNVLGL 152 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L---~~v~~~l~~~~~~l~~sallcl~~l~~vLg~ 152 (554)
+.+.+..-++ +-++-.|...+..+..+-..||.. | ...+ +.+.+++++.|..||.+|+.|+.++-+..|+
T Consensus 168 v~~~l~~g~k----sKN~R~R~e~l~~l~~li~~~G~~-~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 168 MTPMLLDALK----SKNARQRSECLLVIEYYITNAGIS-P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHHHGGG----CSCHHHHHHHHHHHHHHHHHHCSG-G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHHHHHhcCCC-c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 4455555444 335889999999999999999985 3 3345 8888999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHH
Q 041545 153 KALAELPLIMENVRK 167 (554)
Q Consensus 153 ~~iP~LP~imP~ll~ 167 (554)
++--+++++=|.-.+
T Consensus 241 ~v~k~lg~L~~~~~~ 255 (266)
T 2of3_A 241 QMWKAAGRMADKDKS 255 (266)
T ss_dssp HHHHHHCCCCHHHHH
T ss_pred HHHHHHhcCCHHHHH
Confidence 998887765444333
No 71
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.27 E-value=0.23 Score=56.57 Aligned_cols=124 Identities=12% Similarity=0.049 Sum_probs=80.0
Q ss_pred hhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCcc
Q 041545 13 VNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESN 92 (554)
Q Consensus 13 ~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~ 92 (554)
-.++..|.+++..+|+.+++++.. . ++ ...-...+|.|..++. +++
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~-~---------------------------~~--~~i~~g~ip~Lv~lL~----~~d 163 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINY-Q---------------------------DD--AELATRAIPELTKLLN----DED 163 (780)
T ss_dssp --------CCSCHHHHHHHHHHHH-H---------------------------HH--HHHHHHHHHHHHHHHH----CSC
T ss_pred HHHHHHhcCccHHHHHHHHHHHHh-h---------------------------hH--HHHHhCCHHHHHHHHC----CCC
Confidence 467888999999999999999871 1 01 1112567888888887 346
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHhchh-hhchhhHHHHHHHHh
Q 041545 93 ISLKLTAVSTLEVLANRFASYDSV--FNLCLASVTNSISS-RNLALASSCLRTTGALVNVLGLK-ALAELPLIMENVRKK 168 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~~--~~~~L~~v~~~l~~-~~~~l~~sallcl~~l~~vLg~~-~iP~LP~imP~ll~~ 168 (554)
..+|..|+.+|..|+......... ...+++.+++.+.+ .+..++..+..++..++..-..+ .+.- ...+|.+++.
T Consensus 164 ~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~l 242 (780)
T 2z6g_A 164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNM 242 (780)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHH
Confidence 789999999999998754321111 23577777888764 48889999999999987642221 1222 2678888887
Q ss_pred hhh
Q 041545 169 SRE 171 (554)
Q Consensus 169 l~~ 171 (554)
++.
T Consensus 243 L~~ 245 (780)
T 2z6g_A 243 LGS 245 (780)
T ss_dssp TTC
T ss_pred HcC
Confidence 765
No 72
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.25 E-value=0.77 Score=49.40 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=97.2
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCC-C
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTG-E 90 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~-~ 90 (554)
-|+.||.++++.||+.|...|.+=..+... ....+. ..++.|..++..... .
T Consensus 166 ~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-------------------------~r~~i~~~g~i~~Ll~lL~~~~~~~ 220 (529)
T 3tpo_A 166 AFISLLASPHAHISEQAVWALGNIAGAGSA-------------------------FRDLVIKHGAIDPLLALLAVPDLST 220 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-------------------------HHHHHHHTTCHHHHHHTTCSSCGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhccCHH-------------------------HHHHHHHcCCcHHHHHHHhccchhH
Confidence 367799999999999999998843322110 122222 357888888875321 2
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh-hchhhHHHHHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDS--VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA-LAELPLIMENVRK 167 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~--~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~-iP~LP~imP~ll~ 167 (554)
....+...+..++..+++.-....+ ....+++.+++.+.+++..++..+..|++.++..-.... .-.-..++|.++.
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence 2334566777788777764332222 245688888999999999999999999999986543322 1123456777777
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVI 204 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv 204 (554)
.+... +..++..++.++..++
T Consensus 301 lL~~~----------------~~~v~~~a~~aL~nl~ 321 (529)
T 3tpo_A 301 LLGAT----------------ELPIVTPALRAIGNIV 321 (529)
T ss_dssp HHTCS----------------CHHHHHHHHHHHHHHT
T ss_pred HhcCC----------------ChhHHHHHHHHHHHHH
Confidence 66542 2345666777776664
No 73
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.14 E-value=0.66 Score=49.74 Aligned_cols=151 Identities=9% Similarity=0.010 Sum_probs=98.3
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCC-C
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTG-E 90 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~-~ 90 (554)
.|+.+|++++..||+.|...|.+=..+... ....+. ..++.|..++..... .
T Consensus 147 ~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-------------------------~r~~v~~~G~i~~Ll~lL~~~~~~~ 201 (510)
T 3ul1_B 147 AFISLLASPHAHISEQAVWALGNIAGDGSA-------------------------FRDLVIKHGAIDPLLALLAVPDLST 201 (510)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-------------------------HHHHHHHTTCHHHHHHHTCSSCGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-------------------------HHHHHHHcCChHHHHHHHHhccchh
Confidence 377899999999999999999854332211 122222 367888888875321 2
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhh-hchhhHHHHHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDS--VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKA-LAELPLIMENVRK 167 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~--~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~-iP~LP~imP~ll~ 167 (554)
....+...+..++..+++.-....+ ....+++.+++.+.+++..++..+..|++.++..-.... .-.-..++|.+++
T Consensus 202 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 281 (510)
T 3ul1_B 202 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281 (510)
T ss_dssp SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhh
Confidence 2334566777788877764332222 245788888999999999999999999999986443322 1123456777777
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
.+... +..++..++.++..++.
T Consensus 282 lL~~~----------------~~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 282 LLGAT----------------ELPIVTPALRAIGNIVT 303 (510)
T ss_dssp HHTCS----------------CHHHHHHHHHHHHHHTT
T ss_pred hhcCC----------------ChhhhhHHHHHHHHhhc
Confidence 66542 23466777777766653
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=92.83 E-value=0.27 Score=42.46 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=61.4
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|..+|+++++.||..|...|.. +.+ . ..++.|...++ +++.
T Consensus 46 ~L~~~L~d~~~~vR~~A~~aL~~----------------------------~~~--~----~a~~~L~~~L~----d~~~ 87 (131)
T 1te4_A 46 PLLESLSNEDWRIRGAAAWIIGN----------------------------FQD--E----RAVEPLIKLLE----DDSG 87 (131)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHGG----------------------------GCS--H----HHHHHHHHHHH----HCCT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHh----------------------------cCC--H----HHHHHHHHHHc----CCCH
Confidence 46789999999999999999872 111 1 13555666664 3467
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGA 145 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~ 145 (554)
.+|..|+.+|+.+. . + ..++.+++.+.++++.++..+..+++.
T Consensus 88 ~VR~~A~~aL~~~~----~--~---~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 88 FVRSGAARSLEQIG----G--E---RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHHC----S--H---HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhC----c--H---HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 89999999998763 1 2 345666777778889999988887764
No 75
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=92.77 E-value=0.55 Score=53.76 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=99.9
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH---HHHHHHHHhhccCCCC
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR---KMCSEVVLLVDNSTGE 90 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~---~l~~~L~~il~~~~~~ 90 (554)
.|..||.++.+.||+.|.++|++=...... +..|. ..++.|..+++ +
T Consensus 627 ~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~--------------------------~~~~v~~~g~l~~Lv~LL~----s 676 (810)
T 3now_A 627 KIEYYLMEDHLYLTRAAAQCLCNLVMSEDV--------------------------IKMFEGNNDRVKFLALLCE----D 676 (810)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHTTSHHH--------------------------HHHHHSSSSHHHHHHHGGG----C
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCChHH--------------------------HHHHHhccCcHHHHHHHhc----C
Confidence 467799999999999999999976554321 22222 25778888887 3
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHH---HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFN---LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENV 165 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~---~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~l 165 (554)
++..+|..|.-+|.-|+.........+. ..++.+++.+.+++..++..+..|++.++.. +.+..-++ -..+|++
T Consensus 677 ~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L 755 (810)
T 3now_A 677 EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELL 755 (810)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHH
Confidence 4678999999999999875332212222 4777888889999999999999999999873 22222111 2456666
Q ss_pred HHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 166 RKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 166 l~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
...++.. + ..+..+...++.+|..+++
T Consensus 756 ~~LL~~~------------d-~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 756 SGLGQLP------------D-DTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TTSCCCT------------T-STTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCc------------c-cCcHHHHHHHHHHHHHHHh
Confidence 6655431 0 1234567777777777765
No 76
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.16 E-value=0.66 Score=55.47 Aligned_cols=80 Identities=5% Similarity=0.039 Sum_probs=67.1
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcC------------CChhHHHHHHHHHHHHHHHhchhhhch
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSISS------------RNLALASSCLRTTGALVNVLGLKALAE 157 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~------------~~~~l~~sallcl~~l~~vLg~~~iP~ 157 (554)
++..+|++++.+++.+.+-+.. +| .+..+|..+..++.. .+..++..|-.|+..+|+.++..++||
T Consensus 544 ~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~ 622 (1204)
T 3a6p_A 544 KDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPN 622 (1204)
T ss_dssp SCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred CChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4667999999999999988764 55 688899988887754 235799999999999999999999999
Q ss_pred hhHHHHHHHHhhhh
Q 041545 158 LPLIMENVRKKSRE 171 (554)
Q Consensus 158 LP~imP~ll~~l~~ 171 (554)
++.+...+-..+..
T Consensus 623 ~~~i~~~~~~~l~~ 636 (1204)
T 3a6p_A 623 FDMLYNHVKQLLSN 636 (1204)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999987776653
No 77
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.07 E-value=0.7 Score=49.54 Aligned_cols=148 Identities=10% Similarity=0.036 Sum_probs=99.7
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.||.+++..|++.|+..|.+=....+. ....+. ..++.|..++. +.
T Consensus 278 ~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~-------------------------~~~~i~~~g~l~~L~~LL~----~~ 328 (510)
T 3ul1_B 278 QLVKLLGATELPIVTPALRAIGNIVTGTDE-------------------------QTQKVIDAGALAVFPSLLT----NP 328 (510)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTTSCHH-------------------------HHHHHHHTTGGGGCC-CTT----CS
T ss_pred hhhhhhcCCChhhhhHHHHHHHHhhcCCHH-------------------------HHHHHhhccchHHHHHHhc----CC
Confidence 478899999999999999999854433221 111111 24555666665 34
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHH
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRK 167 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~ 167 (554)
+..+|..|..+|.-|+..-......+ ..+++.+++.+.+.+..++..+..+++.++..-..+-+.+| ..++|+++.
T Consensus 329 ~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~ 408 (510)
T 3ul1_B 329 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408 (510)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence 56799999999988864221101111 13677788888889999999999999999987666655555 467888888
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK 206 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~ 206 (554)
.++.. +..+...++.+|..+++.
T Consensus 409 LL~~~----------------d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 409 LLSAK----------------DTKIIQVILDAISNIFQA 431 (510)
T ss_dssp GGGCS----------------CHHHHHHHHHHHHHHHHH
T ss_pred HhcCC----------------CHHHHHHHHHHHHHHHHH
Confidence 77541 234667777777777654
No 78
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=90.73 E-value=4.6 Score=46.17 Aligned_cols=150 Identities=10% Similarity=0.043 Sum_probs=91.5
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
-|+.||+++.+.+|+.|...|.+=....++ .+ .|.. ..-...+|.|..++.. +.+.
T Consensus 540 ~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p---~~---------------~~~~---~~~~~aIppLv~LL~~---~~~~ 595 (810)
T 3now_A 540 ALLRMALEGTEKGKRHATQALARIGITINP---EV---------------SFSG---QRSLDVIRPLLNLLQQ---DCTA 595 (810)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---HH---------------HTTT---HHHHHTHHHHHHTTST---TSCH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHhcCCCh---hh---------------hhcc---hhhhcHHHHHHHHhCC---CCcH
Confidence 367899999999999999999854433221 00 1111 1123478999999973 2233
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh---hHHHHHHHHh
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL---PLIMENVRKK 168 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L---P~imP~ll~~ 168 (554)
..+..|+.+|.-||..=......+. ..++.+++.+.+++..++..+.-|++.|+. ++.....+ ...+|.++..
T Consensus 596 l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 596 LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALL 673 (810)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHH
Confidence 3344677777777643100011111 356777788888889999999999999986 33332222 3577888886
Q ss_pred hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 169 SREISTYVDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 169 l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
+... +..++..++.+|+.+..
T Consensus 674 L~s~----------------d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 674 CEDE----------------DEETATACAGALAIITS 694 (810)
T ss_dssp GGCS----------------SHHHHHHHHHHHHHHHH
T ss_pred hcCC----------------CHHHHHHHHHHHHHHhC
Confidence 6541 12355666666665554
No 79
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=90.47 E-value=3.7 Score=43.12 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=84.0
Q ss_pred hhHHhhhcC-ChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCC
Q 041545 14 NLYASLFNG-EICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGE 90 (554)
Q Consensus 14 ~~~~ll~~~-~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~ 90 (554)
.|..+|.++ ++.+|+.|...|.+ +..... ....+. ..+|.|..+++.
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~-ls~~~~-------------------------~~~~i~~~g~i~~L~~lL~~---- 112 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHN-LSHHRE-------------------------GLLAIFKSGGIPALVKMLGS---- 112 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHH-HTTSHH-------------------------HHHHHHHTTHHHHHHHHTTC----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HHcCch-------------------------hHHHHHHcCCHHHHHHHHcC----
Confidence 466678765 89999999999985 322110 122222 478888888873
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH---hchhhhchhhHHHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNV---LGLKALAELPLIMENV 165 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~v---Lg~~~iP~LP~imP~l 165 (554)
++..++..|+.+|..++..-+.....+ ...++.+++.+.++++.++..+..+++.++.. .+..++. ...+|.+
T Consensus 113 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~--~~~i~~L 190 (529)
T 1jdh_A 113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA--SGGPQAL 190 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHH
Confidence 356799999999999998754321222 35778888999888899999988888888752 1111111 1456677
Q ss_pred HHhhhh
Q 041545 166 RKKSRE 171 (554)
Q Consensus 166 l~~l~~ 171 (554)
+..++.
T Consensus 191 ~~ll~~ 196 (529)
T 1jdh_A 191 VNIMRT 196 (529)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766654
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=89.68 E-value=2.7 Score=44.77 Aligned_cols=148 Identities=11% Similarity=-0.002 Sum_probs=92.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.||+++++.+++.|...|.+ |...++ +.....+. .-+|.|..++.. +.
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~n-Ls~~~~-----------------------~~~k~~I~~~GaI~~LV~lLl~---s~ 299 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRN-LSWRAD-----------------------VNSKKTLREVGSVKALMECALE---VK 299 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHH-HTSSCC-----------------------HHHHHHHHHTTHHHHHHHHHTT---CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-HhcCCC-----------------------HHHHHHHHHcCCHHHHHHHHhc---CC
Confidence 46779999999999999988864 221110 11122222 368888887652 33
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchH---HHHHHHHHHHhcCCCh----hHHHHHHHHHHHHHHH--hchhhhchh--hH
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVF---NLCLASVTNSISSRNL----ALASSCLRTTGALVNV--LGLKALAEL--PL 160 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~---~~~L~~v~~~l~~~~~----~l~~sallcl~~l~~v--Lg~~~iP~L--P~ 160 (554)
+..++..|+.+|..|+.......+.+ ...++.+++.+...+. .++..+.-++..++.. -++.....+ ..
T Consensus 300 ~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G 379 (458)
T 3nmz_A 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc
Confidence 56788889999999987432212233 2477888888875443 4888888888888862 222222222 34
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 041545 161 IMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVI 204 (554)
Q Consensus 161 imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv 204 (554)
.+|.++..++.. +..++..++.+|..+.
T Consensus 380 ~i~~Lv~LL~~~----------------~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 380 CLQTLLQHLKSH----------------SLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHHHSSCS----------------CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCC----------------ChHHHHHHHHHHHHHH
Confidence 678888877642 1235666677776665
No 81
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=89.59 E-value=1.5 Score=41.38 Aligned_cols=92 Identities=7% Similarity=-0.002 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCCC--hhHHHHHHHHHHHH
Q 041545 70 FESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSV-FNLCLASVTNSISSRN--LALASSCLRTTGAL 146 (554)
Q Consensus 70 ~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~-~~~~L~~v~~~l~~~~--~~l~~sallcl~~l 146 (554)
.+|+..+||.+...+-...=... .+|.-|...++.|+++||...+. -..++....+.+.+++ ....--|+.+++++
T Consensus 82 epYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 78999999999999865432222 89999999999999999987664 4456666666665543 33344556665554
Q ss_pred HH-HhchhhhchhhHHH
Q 041545 147 VN-VLGLKALAELPLIM 162 (554)
Q Consensus 147 ~~-vLg~~~iP~LP~im 162 (554)
.. +...-.+|.+|.+.
T Consensus 161 G~~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 161 SKNVVNTVIREHAEEYK 177 (196)
T ss_dssp CHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHhhhcCHHHHH
Confidence 43 22222346666555
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=89.04 E-value=3.4 Score=42.31 Aligned_cols=148 Identities=12% Similarity=0.012 Sum_probs=90.8
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.||+++++.+|+.|...|.+=....+ +.....+. ..+|.|..++.. +.
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~------------------------~~~k~~i~~~G~Ip~Lv~lL~~---~~ 183 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRAD------------------------VNSKKTLREVGSVKALMECALE---VK 183 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCC------------------------HHHHHHHHHTTHHHHHHHHHHH---CC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCC------------------------HHHHHHHHHCCCHHHHHHHHhc---CC
Confidence 46779999999999999888763221100 01112222 368888887652 33
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchH---HHHHHHHHHHhcCCCh----hHHHHHHHHHHHHHHH--hchhhhchh--hH
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVF---NLCLASVTNSISSRNL----ALASSCLRTTGALVNV--LGLKALAEL--PL 160 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~---~~~L~~v~~~l~~~~~----~l~~sallcl~~l~~v--Lg~~~iP~L--P~ 160 (554)
+...+..|+.+|..|+.......+.+ ...++.+++.+...+. .++..+.-++..++.. -.+.....+ ..
T Consensus 184 ~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g 263 (354)
T 3nmw_A 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 263 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC
Confidence 55788888899988886321112222 2577888888875443 4888888888888862 122222211 34
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH
Q 041545 161 IMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVI 204 (554)
Q Consensus 161 imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv 204 (554)
.+|.+++.++.. +..++..++.+|..+.
T Consensus 264 ~i~~Lv~lL~~~----------------~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 264 CLQTLLQHLKSH----------------SLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHHHHHHTTCS----------------CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCC----------------ChHHHHHHHHHHHHHh
Confidence 678888877642 1235666666776664
No 83
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=87.50 E-value=2.7 Score=44.37 Aligned_cols=125 Identities=12% Similarity=-0.013 Sum_probs=87.1
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHH--HHHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESF--RKMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~l~~~L~~il~~~~~~~ 91 (554)
.|+.+|+++++.+|..|...|.+=..++... ...+ ...+|.|..+++. .
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-------------------------~~~i~~~g~i~~Lv~lL~s----~ 56 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-------------------------KQQVYQLGGICKLVDLLRS----P 56 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-------------------------HHHHHHTTHHHHHHHHTTS----S
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-------------------------HHHHHHcCCHHHHHHHHcC----C
Confidence 4778999999999999999998633222210 1111 2468999999982 4
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCC-chHH--HHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhchhh-hchhhHHHHHHH
Q 041545 92 NISLKLTAVSTLEVLANRFASYD-SVFN--LCLASVTNSIS-SRNLALASSCLRTTGALVNVLGLKA-LAELPLIMENVR 166 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~-~~~~--~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vLg~~~-iP~LP~imP~ll 166 (554)
+..++..|..+|..|+..- .+. ..+. ..++..++.+. +++..+++.+.-+++.|+..-..+. +-. ..+|+++
T Consensus 57 ~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv 133 (457)
T 1xm9_A 57 NQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLA 133 (457)
T ss_dssp CHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHH
Confidence 5678999999999998721 111 1222 34677888888 7789999999999999997622222 222 7888999
Q ss_pred Hhhh
Q 041545 167 KKSR 170 (554)
Q Consensus 167 ~~l~ 170 (554)
+.+.
T Consensus 134 ~ll~ 137 (457)
T 1xm9_A 134 DRVI 137 (457)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8884
No 84
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=87.31 E-value=4.5 Score=44.40 Aligned_cols=128 Identities=12% Similarity=0.015 Sum_probs=84.9
Q ss_pred hhHHhhhcC-ChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCC
Q 041545 14 NLYASLFNG-EICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGE 90 (554)
Q Consensus 14 ~~~~ll~~~-~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~ 90 (554)
.|+.+|.++ ++.+|+.|...|. .+..... ....+. ..++.|..+++.
T Consensus 60 ~Lv~~L~~~~~~~~~~~A~~~L~-~Ls~~~~-------------------------~~~~i~~~g~i~~Lv~lL~~---- 109 (644)
T 2z6h_A 60 AIVRTMQNTNDVETARCTAGTLH-NLSHHRE-------------------------GLLAIFKSGGIPALVKMLGS---- 109 (644)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHH-HHTTSHH-------------------------HHHHHHTTTHHHHHHHHTTC----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH-HHhcChh-------------------------hHHHHHHcCCHHHHHHHHhC----
Confidence 466788875 8999999999888 3433221 011111 378888888873
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhch-hhhchhhHHHHHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNVLGL-KALAELPLIMENVRK 167 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~-~~iP~LP~imP~ll~ 167 (554)
++..+|..|+.+|..++.........+ ...++.+++.+.++++.++..+..|++.++..-.. +..-.=...+|.+++
T Consensus 110 ~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~ 189 (644)
T 2z6h_A 110 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 189 (644)
T ss_dssp SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHH
Confidence 357899999999999998763221222 35788888999888888999888899888852111 111111245677777
Q ss_pred hhhh
Q 041545 168 KSRE 171 (554)
Q Consensus 168 ~l~~ 171 (554)
.++.
T Consensus 190 lL~~ 193 (644)
T 2z6h_A 190 IMRT 193 (644)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 6664
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=86.05 E-value=7.4 Score=39.77 Aligned_cols=156 Identities=12% Similarity=0.070 Sum_probs=98.6
Q ss_pred hHHh-hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHH---HHHHHHHHHhhccCCCC
Q 041545 15 LYAS-LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESF---RKMCSEVVLLVDNSTGE 90 (554)
Q Consensus 15 ~~~l-l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---~~l~~~L~~il~~~~~~ 90 (554)
|+.+ +..++..+++.|+..|-+=....+. ..+.+ ...+|.|..++....++
T Consensus 175 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~-------------------------nk~~i~~~~Gai~~Lv~lL~~~~~~ 229 (354)
T 3nmw_A 175 LMECALEVKKESTLKSVLSALWNLSAHCTE-------------------------NKADICAVDGALAFLVGTLTYRSQT 229 (354)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTTCHH-------------------------HHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHccChh-------------------------hhHHHHHhcCcHHHHHHHhccCCCc
Confidence 5665 5667899999888777632221110 01222 24789999999853332
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCC---CchHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHH
Q 041545 91 SNISLKLTAVSTLEVLANRFASY---DSVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIME 163 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~---~~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP 163 (554)
....++..|.-+|..|+..+... ...+. ..++.+++.+.+.+..++..+..+++.++..- ++....+ -..+|
T Consensus 230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~ 308 (354)
T 3nmw_A 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVS 308 (354)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHH
Confidence 23468888999999998743221 11222 35777888888888999999999999998421 1122222 35678
Q ss_pred HHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccccc
Q 041545 164 NVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLN 212 (554)
Q Consensus 164 ~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fls 212 (554)
++++.++.. +..+...+..+|..+...-|....
T Consensus 309 ~Lv~LL~s~----------------~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 309 MLKNLIHSK----------------HKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHTTTTCS----------------SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHhCC----------------CHHHHHHHHHHHHHHHcCCHHHHh
Confidence 888766541 234677788888888776555443
No 86
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=85.62 E-value=2.5 Score=40.90 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=83.5
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHH--HHHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESF--RKMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~l~~~L~~il~~~~~~~ 91 (554)
.|+.||+++++.+|+.|...|-+=...++. ..... ..-+|.|..++.. +.
T Consensus 56 ~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~-------------------------nk~~I~~~GaI~~Lv~lL~~---~~ 107 (233)
T 3tt9_A 56 KLLQLLKVQNEDVQRAVCGALRNLVFEDND-------------------------NKLEVAELNGVPRLLQVLKQ---TR 107 (233)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-------------------------HHHHHHHTTHHHHHHHHHHH---CC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-------------------------HHHHHHHcCCHHHHHHHHcc---CC
Confidence 477899999999999999988743322110 01111 1368888888873 33
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-----c-----------CCChhHHHHHHHHHHHHHHH--hchh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSI-----S-----------SRNLALASSCLRTTGALVNV--LGLK 153 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l-----~-----------~~~~~l~~sallcl~~l~~v--Lg~~ 153 (554)
+.+++..|..+|-.|+..-.-........++.+++.+ + ..+..++.++..|+..|+.. -+-+
T Consensus 108 ~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~ 187 (233)
T 3tt9_A 108 DLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRK 187 (233)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5678888888888887422110112233344443322 1 12568999999999999874 2344
Q ss_pred hhchhhHHHHHHHHhhhh
Q 041545 154 ALAELPLIMENVRKKSRE 171 (554)
Q Consensus 154 ~iP~LP~imP~ll~~l~~ 171 (554)
.+-.-+.++|.++..++.
T Consensus 188 ~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 188 AMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp HHHTSTTHHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHh
Confidence 566668899999998776
No 87
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=84.66 E-value=4 Score=42.95 Aligned_cols=127 Identities=12% Similarity=0.049 Sum_probs=85.5
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.+|+++++.+++.|...|.+=...++. ....+. .-+|.|..++. .+.
T Consensus 48 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~-------------------------~k~~i~~~G~i~~Lv~lL~---~~~ 99 (457)
T 1xm9_A 48 KLVDLLRSPNQNVQQAAAGALRNLVFRSTT-------------------------NKLETRRQNGIREAVSLLR---RTG 99 (457)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHSSCHH-------------------------HHHHHHHTTCHHHHHHHHT---TCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-------------------------HHHHHHHcCCHHHHHHHHh---hCC
Confidence 477899999999999999998854433121 011221 36888888887 344
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHh--------cC--------CChhHHHHHHHHHHHHHHHhchhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSI--------SS--------RNLALASSCLRTTGALVNVLGLKA 154 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l--------~~--------~~~~l~~sallcl~~l~~vLg~~~ 154 (554)
+..++..|+.+|..||.. ..... .....++.+++.+ .+ .+..+...+.-+++.+|.. +..
T Consensus 100 ~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~ 176 (457)
T 1xm9_A 100 NAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAG 176 (457)
T ss_dssp CHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHH
T ss_pred CHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHH
Confidence 668999999999999975 22122 2336777777877 22 2345666899999999975 433
Q ss_pred hchh---hHHHHHHHHhhhh
Q 041545 155 LAEL---PLIMENVRKKSRE 171 (554)
Q Consensus 155 iP~L---P~imP~ll~~l~~ 171 (554)
...+ +.++|+++..++.
T Consensus 177 ~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 177 RQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 3333 4788888887775
No 88
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=84.20 E-value=3.4 Score=46.15 Aligned_cols=80 Identities=9% Similarity=0.125 Sum_probs=57.9
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCC-CchHH--HHHHHH-HHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhH--HHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASY-DSVFN--LCLASV-TNSISSRNLALASSCLRTTGALVNVLGLKALAELPL--IME 163 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~-~~~~~--~~L~~v-~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~--imP 163 (554)
+.+.+.|+.|..||..|+. +.+ ...+. ..+..+ ..++.+++..||..|.-+|..||..-|.++.-++=. ++|
T Consensus 45 S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~ 122 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLT 122 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHH
Confidence 4567799999999999984 221 12222 234433 345777899999999999999999988887766533 778
Q ss_pred HHHHhhhh
Q 041545 164 NVRKKSRE 171 (554)
Q Consensus 164 ~ll~~l~~ 171 (554)
+++..+++
T Consensus 123 ~L~~~l~~ 130 (684)
T 4gmo_A 123 AIEHAAKA 130 (684)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777766
No 89
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=83.85 E-value=14 Score=39.09 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=96.5
Q ss_pred hhHHh-hhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHH---HHHHHHHHHhhccCCC
Q 041545 14 NLYAS-LFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESF---RKMCSEVVLLVDNSTG 89 (554)
Q Consensus 14 ~~~~l-l~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---~~l~~~L~~il~~~~~ 89 (554)
.|+.+ +..+++.+++.|+..|-+=..+.+. -.+.+ ...+|.|..++....+
T Consensus 290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~-------------------------nk~~I~~~~Gal~~Lv~LL~~~~~ 344 (458)
T 3nmz_A 290 ALMECALEVKKESTLKSVLSALWNLSAHCTE-------------------------NKADICAVDGALAFLVGTLTYRSQ 344 (458)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH-------------------------HHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCHH-------------------------HHHHHHHhcCcHHHHHHHhcCCCC
Confidence 36665 5667899999888777533221110 01222 2478888999885433
Q ss_pred CccHhHHHHHHHHHHHHHHHhCCC--C-chHH--HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHH
Q 041545 90 ESNISLKLTAVSTLEVLANRFASY--D-SVFN--LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIM 162 (554)
Q Consensus 90 ~~~~~lrq~Al~~L~~lA~~~g~~--~-~~~~--~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~im 162 (554)
+....++..|.-+|..|+..+... . ..+. ..++.+++.+.+.+..++..+..+++.++.. .++....+ -..+
T Consensus 345 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I 423 (458)
T 3nmz_A 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAV 423 (458)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHH
T ss_pred cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCH
Confidence 333368888889999998743221 1 1222 3577788888888899999999999999842 12222222 2567
Q ss_pred HHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Q 041545 163 ENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLG 208 (554)
Q Consensus 163 P~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~ 208 (554)
|++++.++.. +..+...+..+|..+..+-|
T Consensus 424 ~~Lv~LL~s~----------------~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 424 SMLKNLIHSK----------------HKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHTTTTCS----------------SHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhCC----------------CHHHHHHHHHHHHHHHcCCH
Confidence 8888866541 23466777788877776544
No 90
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=82.40 E-value=73 Score=36.21 Aligned_cols=344 Identities=9% Similarity=0.051 Sum_probs=176.7
Q ss_pred ccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcC---CChhHHHHH
Q 041545 64 HLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSISS---RNLALASSC 139 (554)
Q Consensus 64 ~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~---~~~~l~~sa 139 (554)
.+.+.....|..++-++.-.-.- +.+..+...+..|++.||---|.+.. .+..++..+...+.. .++--..++
T Consensus 327 ~Lt~~~~~~fV~~l~p~~~~g~f---SK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~a 403 (799)
T 1vsy_4 327 CLTSFCHEEIVEIFLNIISLGSQ---NKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISS 403 (799)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhC---cCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHH
Confidence 56777788888766655554442 33556789999999999997775422 577888888887755 456677899
Q ss_pred HHHHHHHHHHhchh--hhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhccc-cc---c
Q 041545 140 LRTTGALVNVLGLK--ALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGF-LN---P 213 (554)
Q Consensus 140 llcl~~l~~vLg~~--~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~F-ls---P 213 (554)
+-|++.+++.+-.. .=+|++.++..++..+. -++-.....++.++..++..+|-- ++ +
T Consensus 404 L~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID----------------~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~ 467 (799)
T 1vsy_4 404 LKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLD----------------MNDTNLTSNLINGIVSIAAFIPIQDLTGEDD 467 (799)
T ss_dssp HHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCC----------------SSCHHHHHHHHHHHHHHHHTSCBCCCCCCCT
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHhccCC----------------cccHHHHHHHHHHHHHHHHhccccccCCcch
Confidence 99999999877654 22344444443333211 122345677888888888877733 22 2
Q ss_pred ----------cHHHHHHHHhhcc-CCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhH
Q 041545 214 ----------YLGDITELLVLCP-EYLPGSDPKLKVKADAVRRLLTDKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPP 282 (554)
Q Consensus 214 ----------YL~~il~~l~l~~-~~~~~~~~~~~s~~~~l~~~la~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpa 282 (554)
+.++-+..+-... ......+.... +...+..+...+ .. +...+.-
T Consensus 468 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~---~~~~~~sT~~f~-----------------~~----v~~f~dr 523 (799)
T 1vsy_4 468 YISFESDTLPLVQQHFYHIKCGESSKTFRVDDELL---NNAFKASTTVFQ-----------------SM----LKVYVEK 523 (799)
T ss_dssp TCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHH---HHHHHHHTSTHH-----------------HH----HHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhccccccccccccHHHH---HHHHHHHHhhHH-----------------HH----HHHHHHH
Confidence 2333322221000 00000111111 111122233333 22 3333333
Q ss_pred HHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHhhhhhhcccChhhHHHHHHHHHHHHHHHHHh
Q 041545 283 LLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLLALDLRRQHRVSIQDIDIVEKSVISTVISLTMK 362 (554)
Q Consensus 283 l~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~aLd~R~~~~~~~~~i~~vE~~vi~a~~~lVlK 362 (554)
++...+. ..+..-+..+..++...+.++++.......+.+++|+..-.. ....+.+..+=.-++.|++..
T Consensus 524 vf~llen--~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~-----~~a~~~v~~L~~~~~~a~~~~--- 593 (799)
T 1vsy_4 524 IFQLVDV--DLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDS-----FKEKDPNYELVTIPLAALVRR--- 593 (799)
T ss_dssp HHHHTTS--CCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSC-----CCSSSCCTHHHHHHHHHHHHH---
T ss_pred HHHHHhc--CchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHh---
Confidence 3333332 111222335556777777777765555555555555544111 111122211100012333222
Q ss_pred hcccchhhHHHHHHhhhhhccccc-----cccccccchh-HHHHHHHHHHHHHhcchhhccchhhHHHHHHHHhhhhhcc
Q 041545 363 LTETMFRPLFIRSIEWAESDVEDI-----GSMKSKSIDR-AIVFYSLVNKLAESHRSLFVPYFKYLLEGCVQHLTDAKGV 436 (554)
Q Consensus 363 LsE~tFrPLf~kl~~WA~~~~~~~-----~~~~~~~~~R-~itfy~l~~~l~e~LKslftpy~~~ll~~~~~~L~~~~~~ 436 (554)
=.+ +|+-++-.+.+--....+.+ +.......++ ..-+..+++.+..+=+..+.+|-..+++.+-..+..+.
T Consensus 594 ~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k-- 670 (799)
T 1vsy_4 594 NNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVT-- 670 (799)
T ss_dssp CGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCC--
T ss_pred CHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhc--
Confidence 233 45444333332111111111 1111122344 44556788888888889999999999987766654432
Q ss_pred cccchhhhhhhhhhhhcccccccccchhhhHHHHHHHHHHHHHhhcccc
Q 041545 437 NTANSTRKKKARIQEAGTIKEQNGSLSINHWQLRALVISSLHKCFLYDT 485 (554)
Q Consensus 437 ~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~l~~~vl~~L~~~F~~D~ 485 (554)
+ ..... -...+.+.+|.+|...--.|+
T Consensus 671 ---~------~~~~~-------------~~~~ll~~lL~sLt~~yp~d~ 697 (799)
T 1vsy_4 671 ---N------PPLDV-------------ITSIVIHSALATLCTTEITDC 697 (799)
T ss_dssp ---C------HHHHH-------------HHTTHHHHHHHHHHCCBCCCC
T ss_pred ---C------cchHH-------------HHHHHHHHHHHHhhheeeccc
Confidence 0 00000 012256789999998766665
No 91
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=79.89 E-value=7.4 Score=42.75 Aligned_cols=130 Identities=13% Similarity=0.056 Sum_probs=84.7
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHHHHhhccCCCCc
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEVVLLVDNSTGES 91 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L~~il~~~~~~~ 91 (554)
.|+.||++++..||++|...|.+=....+. ....... .-+|.|..++.. ..
T Consensus 94 ~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~------------------------~nk~~I~~~GaIp~LV~LL~s---~~ 146 (584)
T 3l6x_A 94 VLVGLLDHPKKEVHLGACGALKNISFGRDQ------------------------DNKIAIKNCDGVPALVRLLRK---AR 146 (584)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHTSSSCH------------------------HHHHHHHHTTHHHHHHHHHHH---CC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHccCCH------------------------HHHHHHHHcCCHHHHHHHHcC---CC
Confidence 477899999999999999999743321110 0011122 368888888883 33
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHh------------------cCCChhHHHHHHHHHHHHHHHh--
Q 041545 92 NISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSI------------------SSRNLALASSCLRTTGALVNVL-- 150 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l------------------~~~~~~l~~sallcl~~l~~vL-- 150 (554)
+..++..|..+|-.|+.. ..... .....++.+++.+ ...+..++.++.-||..|+..-
T Consensus 147 ~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~ 225 (584)
T 3l6x_A 147 DMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSE 225 (584)
T ss_dssp SHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHH
T ss_pred CHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHH
Confidence 567888888899988872 11111 2334455555543 1235789999999999998643
Q ss_pred chhhhchhhHHHHHHHHhhhh
Q 041545 151 GLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 151 g~~~iP~LP~imP~ll~~l~~ 171 (554)
+-+.+--.+.++++++..++.
T Consensus 226 ~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 226 ARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHH
Confidence 234455567788899988775
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=79.65 E-value=17 Score=37.22 Aligned_cols=132 Identities=12% Similarity=-0.007 Sum_probs=83.4
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhH
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISL 95 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~l 95 (554)
.++.++++..+||=+.-.+.+=.+. ..+.+ -.+..|..=++ +.+.-+
T Consensus 74 ~kl~~s~d~~lKrLvYLyl~~~~~~----------------------------~~e~i-Lv~Nsl~kDl~----~~N~~i 120 (355)
T 3tjz_B 74 TKLFQSNDPTLRRMCYLTIKEMSCI----------------------------AEDVI-IVTSSLTKDMT----GKEDSY 120 (355)
T ss_dssp HGGGGCCCHHHHHHHHHHHHHHTTT----------------------------SSCGG-GGHHHHHHHHH----SSCHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCCC----------------------------HHHHH-HHHHHHHhhcC----CCcHhH
Confidence 5588888888888666655531111 12222 23444444444 334568
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhh
Q 041545 96 KLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTY 175 (554)
Q Consensus 96 rq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~ 175 (554)
|+.|+-+|..|. +...+..+.+.+.+++.+.++-||..|++|.. +.+|.-|.++...+..+++.-
T Consensus 121 R~lALRtL~~I~-----~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~--------kL~~~~pe~v~~~~~~l~~ll-- 185 (355)
T 3tjz_B 121 RGPAVRALCQIT-----DSTMLQAIERYMKQAIVDKVPSVSSSALVSSL--------HLLKCSFDVVKRWVNEAQEAA-- 185 (355)
T ss_dssp HHHHHHHHHHHC-----CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH--------HHTTTCHHHHHTTHHHHHHHT--
T ss_pred HHHHHHHHhcCC-----CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHhccCHHHHHHHHHHHHHHh--
Confidence 999988888772 22356677778889999999999999999966 666777777766555444321
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHHHHHH
Q 041545 176 VDVQNESNEDKTQRESLMASVLITLEAVID 205 (554)
Q Consensus 176 ~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~ 205 (554)
.|.+.-++..++.++..+-+
T Consensus 186 ----------~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 186 ----------SSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp ----------TCSSHHHHHHHHHHHHHHHT
T ss_pred ----------cCCCccHHHHHHHHHHHHHh
Confidence 12234456666776666654
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=78.20 E-value=18 Score=35.20 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=81.7
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
+.++++..+..|--||++.|+.=+.+.+. +.+.|.+++..|..++. +.+..
T Consensus 80 iI~llk~~dEkval~A~r~L~~LLe~vpL-------------------------~~~~y~Kl~~aL~dlik----~~~~i 130 (265)
T 3b2a_A 80 FINALSQENEKVTIKALRALGYLVKDVPM-------------------------GSKTFLKAAKTLVSLLE----SPDDM 130 (265)
T ss_dssp HHHTCCSTTHHHHHHHHHHHHHHHTTCCB-------------------------CHHHHHHHHHHHHHHTT----SCCHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCCCC-------------------------CHHHHHHHHHHHHHHhc----CCCch
Confidence 56689999999999999999977766553 36789999999999998 22456
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchh
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLK 153 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~ 153 (554)
++--|.+.++.+ +.- .....++..+.+.+.+.|.++.+.++.++.+++..-|+.
T Consensus 131 l~~eaae~Lgkl--kv~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 131 MRIETIDVLSKL--QPL---EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHHHHHHHHHHC--CBS---CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHhCcC--Ccc---cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 788888888888 222 124456667777778899999999999999998766543
No 94
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=77.07 E-value=19 Score=33.84 Aligned_cols=117 Identities=8% Similarity=0.068 Sum_probs=72.8
Q ss_pred cHhHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHH
Q 041545 92 NISLKLTAVSTLEVLANRFASY-DSVFNLCLASVTNSISS---RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRK 167 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~l~~---~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~ 167 (554)
+...-...+..+..+..+=.-. +|++-.++|.+..|+-. ....+|..|-..++.+|+.+|..--.--|+++-.+.+
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k 138 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG 138 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence 3333333344444444433222 78999999999888622 2337999999999999999997654445666655555
Q ss_pred hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHH-HHhcccccccHHHHHHHH
Q 041545 168 KSREISTYVDVQNESNEDKTQRESLMASVLITLEAVI-DKLGGFLNPYLGDITELL 222 (554)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv-~~l~~FlsPYL~~il~~l 222 (554)
.+.+. ..+-..+.+++..+.++- +....++.|.++.+...+
T Consensus 139 ~l~dp--------------~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 139 VWMDP--------------NRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp HHTCT--------------TSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHHT
T ss_pred HHcCC--------------CCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHHH
Confidence 44431 123345556665554443 344456668888888764
No 95
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=74.70 E-value=39 Score=34.10 Aligned_cols=144 Identities=19% Similarity=0.298 Sum_probs=87.1
Q ss_pred HHhHhhHHHHHhhhhhhcCcchHHHHHHHHHHHHHhcCCCccccchHHHHHHHHH-HhhhhhhcccC----hhhHHHHHH
Q 041545 276 VRLALPPLLKIYSGAVDAGDSSLVIAFEILGNIISRMDRSSIGGFHGKIFDQCLL-ALDLRRQHRVS----IQDIDIVEK 350 (554)
Q Consensus 276 ~r~Llpal~~~~~~~~~~~~~~l~~ll~~L~~~i~~~~~~~i~~~~~~l~~~~l~-aLd~R~~~~~~----~~~i~~vE~ 350 (554)
+.-++.++..=|...+. ..-....+++++..|++++. .+....+.+++-.++ .|+.=...-.+ ....-..=.
T Consensus 71 ippLl~~VL~DY~~~vp--~aRepeVL~l~~tii~kl~~-~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ 147 (321)
T 1w9c_A 71 VPPLLDAVLIDYQRNVP--AAREPEVLSTMAIIVNKLGG-HITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQ 147 (321)
T ss_dssp HHHHHHHHHHHHHTSCG--GGCCTHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 33344455555654221 12234778999999999986 677788888776664 35542221111 112222223
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHhhhhhccccccccccccchhHH------HHHHHHHHHHH---hcchhhccchhh
Q 041545 351 SVISTVISLTMKLTETMFRPLFIRSIEWAESDVEDIGSMKSKSIDRAI------VFYSLVNKLAE---SHRSLFVPYFKY 421 (554)
Q Consensus 351 ~vi~a~~~lVlKLsE~tFrPLf~kl~~WA~~~~~~~~~~~~~~~~R~i------tfy~l~~~l~e---~LKslftpy~~~ 421 (554)
.++..+-...++|.+..|+-++-.++ ||... ..|.+ ..+.+++.+.. .-.+-+--||-.
T Consensus 148 ai~~~cF~al~~lp~~~fklvidsii-Wa~kH-----------~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~ 215 (321)
T 1w9c_A 148 AVNSHCFPAFLAIPPTQFKLVLDSII-WAFKH-----------TMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCD 215 (321)
T ss_dssp HHHHHCTTHHHHSCHHHHHHHHHHHH-HHTTC-----------SSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHH-HHcCC-----------CCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 44444445778899999998888776 99853 33333 33455555542 344566778888
Q ss_pred HHHHHHHHhhhhh
Q 041545 422 LLEGCVQHLTDAK 434 (554)
Q Consensus 422 ll~~~~~~L~~~~ 434 (554)
++..+..+|+|..
T Consensus 216 il~~if~VlTDs~ 228 (321)
T 1w9c_A 216 ILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHhCch
Confidence 8888889998853
No 96
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=74.06 E-value=20 Score=36.33 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=75.8
Q ss_pred hcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhh-----ccCCCCccHh
Q 041545 20 FNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLV-----DNSTGESNIS 94 (554)
Q Consensus 20 ~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il-----~~~~~~~~~~ 94 (554)
-+.++.|||..|.|++.=+....+ ....-..++|.|..-+ +...+.-+
T Consensus 39 vr~lR~vKkeiLkLiet~i~~~~d-------------------------~~~v~~~~ippLl~~VL~DY~~~vp~aRe-- 91 (321)
T 1w9c_A 39 IRSMRTVKRETLKLISGWVSRSND-------------------------PQMVAENFVPPLLDAVLIDYQRNVPAARE-- 91 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSC-------------------------HHHHHHHTHHHHHHHHHHHHHTSCGGGCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-------------------------HHHHHHHHHHHHHHHHHHHHHhCCccccc--
Confidence 345589999999999966644321 1222345677766433 21111111
Q ss_pred HHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHH----hcC---CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHH
Q 041545 95 LKLTAVSTLEVLANRFASY-DSVFNLCLASVTNS----ISS---RNLALASSCLRTTGALVNVLGLKALAELPLIMENVR 166 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~-~~~~~~~L~~v~~~----l~~---~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll 166 (554)
-..+.++.++.+++|.. .|....++..+.++ ++. +-|..|..-+..+.+++..|=+-++..=|.-..-++
T Consensus 92 --peVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvi 169 (321)
T 1w9c_A 92 --PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVL 169 (321)
T ss_dssp --THHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHH
Confidence 24678888999999876 45677777776654 542 569999999999999998776666554444444444
Q ss_pred H
Q 041545 167 K 167 (554)
Q Consensus 167 ~ 167 (554)
+
T Consensus 170 d 170 (321)
T 1w9c_A 170 D 170 (321)
T ss_dssp H
T ss_pred H
Confidence 4
No 97
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=74.01 E-value=60 Score=30.61 Aligned_cols=108 Identities=8% Similarity=0.070 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHH
Q 041545 119 LCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLI 198 (554)
Q Consensus 119 ~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~ls 198 (554)
+++..+++.+.++-|.|+..++..+..+++....-.-|.+-+++-.+=+ .+ .-.+.+.+-.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k----sE---------------aIpltqeIa~ 92 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK----SE---------------AIPLTQEIAK 92 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----CC---------------SHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh----cc---------------cCchHHHHHH
Confidence 4566777888877899999999999999998887777777666643222 11 1124566777
Q ss_pred HHHHHHHHhcccccccHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHhhhh
Q 041545 199 TLEAVIDKLGGFLNPYLGDITELLVLCPEYLPGSDPKLKVKADAVRRLLTDKIQ 252 (554)
Q Consensus 199 aL~~lv~~l~~FlsPYL~~il~~l~l~~~~~~~~~~~~~s~~~~l~~~la~~v~ 252 (554)
+++.+..-=|.-+-|-++-+.. .|.-| |++.+.-+.....-++...|
T Consensus 93 a~G~la~i~Pe~v~~vVp~lfa------nyrig-d~kikIn~~yaLeeIaranP 139 (253)
T 2db0_A 93 AFGQMAKEKPELVKSMIPVLFA------NYRIG-DEKTKINVSYALEEIAKANP 139 (253)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH------HSCCC-SHHHHHHHHHHHHHHHHHCH
T ss_pred HHhHHHHhCHHHHHhhHHHHHH------HHhcC-CccceecHHHHHHHHHHhCh
Confidence 8888887766655544443333 34445 66777777777788888888
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=73.55 E-value=17 Score=34.97 Aligned_cols=93 Identities=9% Similarity=-0.061 Sum_probs=64.4
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-hch
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVF--NLCLASVTNSISSRNLALASSCLRTTGALVNV-LGL 152 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~--~~~L~~v~~~l~~~~~~l~~sallcl~~l~~v-Lg~ 152 (554)
.+|.|+.++.. ++.+..++..|..++..++..-......+ ...++..++.+.+++..++..+.-++..++.. -..
T Consensus 9 ~i~~lV~lL~s--~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEA--DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCS--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCC--CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 57899999984 33334678888889998886543211122 24678889999999999999999999999863 111
Q ss_pred -hhhchhhHHHHHHHHhhhh
Q 041545 153 -KALAELPLIMENVRKKSRE 171 (554)
Q Consensus 153 -~~iP~LP~imP~ll~~l~~ 171 (554)
..|-- -..+|++++.|+.
T Consensus 87 k~~I~~-~GaI~~Lv~lL~~ 105 (233)
T 3tt9_A 87 KLEVAE-LNGVPRLLQVLKQ 105 (233)
T ss_dssp HHHHHH-TTHHHHHHHHHHH
T ss_pred HHHHHH-cCCHHHHHHHHcc
Confidence 22322 3578888887764
No 99
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=72.56 E-value=20 Score=40.69 Aligned_cols=137 Identities=8% Similarity=0.050 Sum_probs=84.1
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|..||..+...|||.|.+++|+=....... -+| +++.. .+.=.+=++.|..+++ +++.
T Consensus 610 ~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i--~~k--------------~~~~~-~~~~~~rL~lLV~Ll~----s~D~ 668 (778)
T 3opb_A 610 TIENLMLDENVPLQRSTLELISNMMSHPLTI--AAK--------------FFNLE-NPQSLRNFNILVKLLQ----LSDV 668 (778)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHTSGGGT--GGG--------------TSCCS-SHHHHHHHHHHHHGGG----CSCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhCCcHHH--HHH--------------HHhhc-CchhhccHHHHHHHHc----CCCH
Confidence 3556899999999999999999877643310 010 12221 1211122566777775 4577
Q ss_pred hHHHHHHHHHHHHHHHhCCCCch-H--HHHHHHHHHHhcC--CChhHHHHHHHHHHHHHH----Hhchhhhchh---hHH
Q 041545 94 SLKLTAVSTLEVLANRFASYDSV-F--NLCLASVTNSISS--RNLALASSCLRTTGALVN----VLGLKALAEL---PLI 161 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~-~--~~~L~~v~~~l~~--~~~~l~~sallcl~~l~~----vLg~~~iP~L---P~i 161 (554)
..|..|.-+|..++..++.-... + ...+..+++.+.. ++..++..++.|+..|++ ..+.+.++-+ ++.
T Consensus 669 ~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l 748 (778)
T 3opb_A 669 ESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKL 748 (778)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHH
Confidence 89999998888887655432111 1 1233344455544 789999999999999997 3443443333 355
Q ss_pred HHHHHHhhhh
Q 041545 162 MENVRKKSRE 171 (554)
Q Consensus 162 mP~ll~~l~~ 171 (554)
...+.++++.
T Consensus 749 ~~~l~~~lk~ 758 (778)
T 3opb_A 749 KDALNMSLKR 758 (778)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 5555555554
No 100
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=69.75 E-value=46 Score=36.88 Aligned_cols=94 Identities=11% Similarity=0.119 Sum_probs=66.4
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCC--------c-----hHH-------HHHHHHHHHhcCCChhH
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYD--------S-----VFN-------LCLASVTNSISSRNLAL 135 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~--------~-----~~~-------~~L~~v~~~l~~~~~~l 135 (554)
=++.|..+++. +.+|.++-+.++++|-.+-..-+.+. + .+. +-++.+++.+.+.+--+
T Consensus 61 ~l~~li~~L~~--d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 61 AMEHLIHVLQT--DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp THHHHHHHHHS--CTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHhc--ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 47788888885 66788888888888754432111100 0 122 22445567788889999
Q ss_pred HHHHHHHHHHHHHHhchh---hhchhhHHHHHHHHhhhh
Q 041545 136 ASSCLRTTGALVNVLGLK---ALAELPLIMENVRKKSRE 171 (554)
Q Consensus 136 ~~sallcl~~l~~vLg~~---~iP~LP~imP~ll~~l~~ 171 (554)
|-+++-|+..+|..-+.+ +|---|.-+|.++..|++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 999999999999988764 466678999999998876
No 101
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=67.73 E-value=14 Score=43.37 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=61.0
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCc-----hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDS-----VFNLCLASVTNSISSRNLALASSCLRTTGALVNVL 150 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~-----~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vL 150 (554)
++..+..+++......+..+|++|+.+++.+++++-.+++ ....+...+.+.+...+..-+...|-+||.+..
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 4445555555322234556888888888888888765421 244555555566665555556666666666543
Q ss_pred chhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 041545 151 GLKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK 206 (554)
Q Consensus 151 g~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~ 206 (554)
|..++.+.+.+.... . ...+....+..+++.||..+...
T Consensus 470 --------p~~l~~l~~~l~~~~----~-----~~~~~~~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 470 --------PNSIKKIQRFLPGQG----K-----SLDEYSTRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp --------GGGHHHHHTTSTTSS----S-----CCCCSCHHHHHHHHHTTTTGGGT
T ss_pred --------hhHHHHHHHhhcCcc----c-----cccccchHHHHHHHHHHHHhhhh
Confidence 344444444332210 0 01112345667777777666644
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=66.02 E-value=44 Score=36.99 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=48.9
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH--HHHHHH-HHhhccCCCCc
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR--KMCSEV-VLLVDNSTGES 91 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~l~~~L-~~il~~~~~~~ 91 (554)
++..|+++++..|..|+..|++=+++.. ....+. ..++.+ ..++. +.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~--------------------------~~~l~~~~~~v~~ll~~lL~----D~ 88 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAK--------------------------CRKLLLREQVVHIVLTETLT----DN 88 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHH--------------------------HHHHHHHTTHHHHHHHTTTT----CS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcH--------------------------HHHHHHHcCCHHHHHHHHcC----CC
Confidence 6788999999999999999997553211 133333 244443 33343 44
Q ss_pred cHhHHHHHHHHHHHHHHHhCCC
Q 041545 92 NISLKLTAVSTLEVLANRFASY 113 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~ 113 (554)
+.++|..|..+|..|+..-|.+
T Consensus 89 ~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 89 NIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHHHHHhhcCch
Confidence 6789999999999999887754
No 103
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=65.80 E-value=9.9 Score=41.74 Aligned_cols=128 Identities=14% Similarity=0.016 Sum_probs=80.6
Q ss_pred hhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccH
Q 041545 14 NLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNI 93 (554)
Q Consensus 14 ~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~ 93 (554)
.|+.+|+++++.++..|...|.+=...+.. .++ .-.-..-+|.|+.++. +.+.
T Consensus 52 ~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~--~k~---------------------~V~~~G~Ip~LV~LL~----s~~~ 104 (584)
T 3l6x_A 52 EVIAMLGFRLDAVKSNAAAYLQHLCYRNDK--VKT---------------------DVRKLKGIPVLVGLLD----HPKK 104 (584)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHH--HHH---------------------HHHHTTHHHHHHHGGG----CSSH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChH--HHH---------------------HHHHcCCcHHHHHHHC----CCCH
Confidence 578899999999999998877533222111 000 1111247899999998 3467
Q ss_pred hHHHHHHHHHHHHHHHhCCCCc-hHH--HHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhh
Q 041545 94 SLKLTAVSTLEVLANRFASYDS-VFN--LCLASVTNSISS-RNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKS 169 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~-~~~--~~L~~v~~~l~~-~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l 169 (554)
.++..|+.+|..||..-+.+.. .+. ..++.+++.+.+ .+..++..+..|+..|+..-..+.. .....+|++++.+
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~-I~~~alp~Lv~LL 183 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME-IVDHALHALTDEV 183 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH-HHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhccHHHHHHHH
Confidence 8999999999999752111111 122 356777777775 5678888888888888763222211 1134577777755
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=65.70 E-value=58 Score=35.83 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=83.6
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhcc------CC
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDN------ST 88 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~------~~ 88 (554)
|..=|+++.=.+|.=|---|.+=++.++..- .|. +.... .+.-.|..++.. ++
T Consensus 179 L~~DLFdp~WEiRHGAALGLREILR~hG~GA-----GR~------------~~~N~----DLAvRLLCVLALDRFGDYVS 237 (800)
T 3oc3_A 179 ISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-----DIQ------------IRVDS----KLFSKIYEILVTDKFNDFVD 237 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCC---------CC------------CCCCT----THHHHHHHHHHHBCCBBCSS
T ss_pred HHHHhcCcchhhhhHHHHHHHHHHHHhccCC-----cee------------ccccH----HHHHHHHHHHHhcccccccc
Confidence 3446788888999999888888777665210 000 11111 455555555532 22
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHh
Q 041545 89 GESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKK 168 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~ 168 (554)
+.-=+.+|-+|..+|+.+ ...+.+ + .++...+..+....|+++-++++.+--+ ...+..||.++|.++..
T Consensus 238 DqVVAPVRETaAQtLGaL-~hLp~e---~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~G 307 (800)
T 3oc3_A 238 DRTVAPVRDAAAYLLSRI-YPLIGP---N-DIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSL 307 (800)
T ss_dssp SSCBCHHHHHHHHHHHHH-TTTSCS---C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHH
T ss_pred CeeeeehHHHHHHHHHHH-HhCChh---H-HHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhh
Confidence 333445999999999999 666654 2 3344444556778899999999999887 34444499999999998
Q ss_pred hhh
Q 041545 169 SRE 171 (554)
Q Consensus 169 l~~ 171 (554)
|++
T Consensus 308 L~D 310 (800)
T 3oc3_A 308 LSS 310 (800)
T ss_dssp TTC
T ss_pred cCC
Confidence 876
No 105
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=65.38 E-value=87 Score=35.47 Aligned_cols=133 Identities=10% Similarity=0.063 Sum_probs=88.8
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCC---C-----CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFAS---Y-----DSVFNLCLASVTNSISSRNLALASSCLRTTGALV 147 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~---~-----~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~ 147 (554)
.+|.|..++. ++...+|+.|..++.-++..-.. + .|.-..-++..+..+.+++.+++..+.-+++.++
T Consensus 607 a~~~L~~LL~----s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 607 YWSTIENLML----DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHGGG----CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 4566666665 34567999999999998852210 1 1111123777888888899999999999999997
Q ss_pred HHhc--hhhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHH---------Hhcccc-cccH
Q 041545 148 NVLG--LKALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVID---------KLGGFL-NPYL 215 (554)
Q Consensus 148 ~vLg--~~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~---------~l~~Fl-sPYL 215 (554)
.... .+.+-..+..++.++.+++... .++.++.-++.++..+++ .+..|. .+-+
T Consensus 683 s~~~~ia~~ll~~~~gi~~Ll~lL~~~~--------------~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l 748 (778)
T 3opb_A 683 TTIPLIAKELLTKKELIENAIQVFADQI--------------DDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKL 748 (778)
T ss_dssp HHCHHHHHHHTTCHHHHHHHHHHHHHTT--------------TCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHH
T ss_pred CCChHHHHHHHHccccHHHHHHHHhccC--------------CCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHH
Confidence 6544 3667777889999999887621 134578888888888886 334444 3444
Q ss_pred HHHHHHHhhcc
Q 041545 216 GDITELLVLCP 226 (554)
Q Consensus 216 ~~il~~l~l~~ 226 (554)
.+.+..+...+
T Consensus 749 ~~~l~~~lk~~ 759 (778)
T 3opb_A 749 KDALNMSLKRG 759 (778)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHhCC
Confidence 55555544444
No 106
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=62.42 E-value=44 Score=39.06 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=81.7
Q ss_pred HHHHHHhhccCCC-CccHhHHHHHHHHHHHHHH-HhCC-CCchHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHhch
Q 041545 77 CSEVVLLVDNSTG-ESNISLKLTAVSTLEVLAN-RFAS-YDSVFNLCLASVTNSISSRN-LALASSCLRTTGALVNVLGL 152 (554)
Q Consensus 77 ~~~L~~il~~~~~-~~~~~lrq~Al~~L~~lA~-~~g~-~~~~~~~~L~~v~~~l~~~~-~~l~~sallcl~~l~~vLg~ 152 (554)
++.+...+..... +..| .|..++.-+..+.= ++-- ....-..++..+.++|.++. .+||++|--+|+.|+++.|.
T Consensus 799 ~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~ 877 (997)
T 1vsy_5 799 VAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE 877 (997)
T ss_dssp HHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc
Confidence 4444444444333 5677 88888777665543 2211 12233466777788888888 99999999999999988623
Q ss_pred -hhhchhhHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccc--cccHHHHHHHHh
Q 041545 153 -KALAELPLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFL--NPYLGDITELLV 223 (554)
Q Consensus 153 -~~iP~LP~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~Fl--sPYL~~il~~l~ 223 (554)
..+. .++..+.+.+....... ... ...........+++-.|++++...|+.+ -||+++++..+.
T Consensus 878 ~~~~~---~li~~f~~~~~~~~~~~-~~~---~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La 944 (997)
T 1vsy_5 878 EQPLL---SLIERFAKGLDVNKYTS-KER---QKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLS 944 (997)
T ss_dssp HHHHH---HHHHHHTTSSTTTSSCH-HHH---HHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHH
T ss_pred hhhHH---HHHHHHHHHHhhccccc-ccc---cccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
Confidence 2211 22222222220000000 000 0000111356788888999999999998 699999998763
No 107
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=61.82 E-value=31 Score=35.27 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=72.5
Q ss_pred hhcchhhhHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccC
Q 041545 8 LSVAPVNLYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNS 87 (554)
Q Consensus 8 ~~~~~~~~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~ 87 (554)
.+|+-=++-.=++++.+.+|==||+.|+ ++.... ....+.+.+...+.
T Consensus 102 ~iLv~Nsl~kDl~~~N~~iR~lALRtL~-~I~~~~-----------------------------m~~~l~~~lk~~L~-- 149 (355)
T 3tjz_B 102 VIIVTSSLTKDMTGKEDSYRGPAVRALC-QITDST-----------------------------MLQAIERYMKQAIV-- 149 (355)
T ss_dssp GGGGHHHHHHHHHSSCHHHHHHHHHHHH-HHCCTT-----------------------------THHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhhcCCCcHhHHHHHHHHHh-cCCCHH-----------------------------HHHHHHHHHHHHcC--
Confidence 3466666777899999999999999999 333322 23345666666666
Q ss_pred CCCccHhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 041545 88 TGESNISLKLTAVSTLEVLANRFASYDS-VFNLCLASVTNSISSRNLALASSCLRTTGALVN 148 (554)
Q Consensus 88 ~~~~~~~lrq~Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~ 148 (554)
+.+.-+|.+|+.|.-.+ |.. .| .....++.+.+.+.+.++-+...++.++.++++
T Consensus 150 --d~~pyVRk~A~l~~~kL---~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 150 --DKVPSVSSSALVSSLHL---LKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp --CSSHHHHHHHHHHHHHH---TTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHHHHH---hcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 44677999999996644 433 45 344566777888888888888777777777764
No 108
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.98 E-value=32 Score=39.94 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=69.7
Q ss_pred ccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhh
Q 041545 91 SNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSI-SSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKS 169 (554)
Q Consensus 91 ~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l-~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l 169 (554)
.+..+|+.|+.+|+.|+ +|. +. ..+.+++.+ ...++.+|-.+.+++|-++..-| .++++..+-..+
T Consensus 590 ~~d~VRraAViaLGlI~--~g~--~e---~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~------~~~aid~L~~L~ 656 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVL--LRD--YT---TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG------LQSAIDVLDPLT 656 (963)
T ss_dssp SCHHHHHHHHHHHHHHT--SSS--CS---SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC------CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhc--cCC--HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC------cHHHHHHHHHHc
Confidence 34468999988888774 333 21 233444433 45789999999999998875433 245555333322
Q ss_pred hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 170 REISTYVDVQNESNEDKTQRESLMASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
+ |.+..+-.+++.+|+.+......-..|.+.++++.+
T Consensus 657 ~----------------D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L 693 (963)
T 4ady_A 657 K----------------DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNF 693 (963)
T ss_dssp T----------------CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred c----------------CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 2 224567888999999988877788889999998875
No 109
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=53.27 E-value=58 Score=35.87 Aligned_cols=55 Identities=7% Similarity=-0.003 Sum_probs=45.2
Q ss_pred CCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 041545 89 GESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALV 147 (554)
Q Consensus 89 ~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~ 147 (554)
....|+.|+.++..|+-+..-+. .+..+++.++.++++.++.|++.|..++..++
T Consensus 273 ~~~~WEVRHGGLLGLKYL~DLL~----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 273 DSGDWQVQFSGLIALGYLKEFVE----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp GCSCHHHHHHHHHHHHHTGGGCC----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred CCCCeeehhhhHHHHHHHHHHHH----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 35689999999999998822222 28888999999999999999999988888877
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=50.47 E-value=2.6e+02 Score=29.84 Aligned_cols=245 Identities=16% Similarity=0.177 Sum_probs=118.9
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
++.|....|..||++|+.=|-.=- .. ++..+....|.++++. ++..+..
T Consensus 70 ~lDLcEDed~~IR~qaik~Lp~~c----------------------------k~--~~i~kiaDvL~QlLqt-dd~~E~~ 118 (507)
T 3u0r_A 70 QLDLCEDEDVSIRRQAIKELPQFA----------------------------TG--ENLPRVADILTQLLQT-DDSAEFN 118 (507)
T ss_dssp HHHHHTCSSHHHHHHHHHHGGGGC----------------------------CT--TCHHHHHHHHHHHTTC-CCHHHHH
T ss_pred HHHHHhcccHHHHHHHHHhhHHHh----------------------------hh--hhhhhHHHHHHHHHhc-cchHHHH
Confidence 556777888888888877665111 11 3455677777888873 2222333
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhhhhh
Q 041545 95 LKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSREIST 174 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~~~~ 174 (554)
.-+.| |-.+-+.-++ ..+..++..+.. ++..+|+-++-++..=...++...+. ..+--.++...+..
T Consensus 119 ~V~~s---L~sllk~Dpk--~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~--~E~E~~i~~~ikK~-- 185 (507)
T 3u0r_A 119 LVNNA---LLSIFKMDAK--GTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLT--KEVEELILTESKKV-- 185 (507)
T ss_dssp HHHHH---HHHHHHHCHH--HHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSC--HHHHHHHHHHHHHH--
T ss_pred HHHHH---HHHHHhcChH--HHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhcc--HHHHHHHHHHHHHH--
Confidence 33333 3333333221 134433333333 46788888888888777777776653 22222222222221
Q ss_pred hhhhhcccccchhhHH-HHHHHHHHHHHHHHHHhccccc-ccHHHHHHHH----hhccCCCCCCChhHHHHHHHHHHHHH
Q 041545 175 YVDVQNESNEDKTQRE-SLMASVLITLEAVIDKLGGFLN-PYLGDITELL----VLCPEYLPGSDPKLKVKADAVRRLLT 248 (554)
Q Consensus 175 ~~~~~~~~~~~~d~~~-~l~~s~lsaL~~lv~~l~~Fls-PYL~~il~~l----~l~~~~~~~~~~~~~s~~~~l~~~la 248 (554)
+.+. ...+ .+.+.++. .++-|=+ +-..+++..+ -+...+.. .|. ..++.+..++.
T Consensus 186 L~DV--------T~~EF~L~m~lL~-------~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~-sD~---e~vdRlI~C~~ 246 (507)
T 3u0r_A 186 LEDV--------TGEEFVLFMKILS-------GLKSLQTVSGRQQLVELVAEQADLEQTFNP-SDP---DCVDRLLQCTR 246 (507)
T ss_dssp TTSC--------CHHHHHHHHHHHH-------TSGGGSSHHHHHHHHHHHHHHHTTTSCCCS-SCH---HHHHHHHHHHH
T ss_pred hccc--------cHHHHHHHHHHHH-------hcccccCchHHHHHHHHHHHHHhccCCCCC-cCH---HHHHHHHHHHH
Confidence 1111 1111 23333332 2222211 1122333322 11122211 122 24444445555
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHHHHhHhhHHHHHhhhhhhc--CcchHHHHHHHHHHHHHhcC-CCccccchHHHH
Q 041545 249 DKIQVIVLIKMLVIDFDLKFLLFILHLVRLALPPLLKIYSGAVDA--GDSSLVIAFEILGNIISRMD-RSSIGGFHGKIF 325 (554)
Q Consensus 249 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~Llpal~~~~~~~~~~--~~~~l~~ll~~L~~~i~~~~-~~~i~~~~~~l~ 325 (554)
..+| ..+-..++ -+++.-+.+.++| .|+.+.+. +...=..++..+++....++ -.......+.+|
T Consensus 247 ~ALP------~FS~~v~S--tkFv~y~~~kIlP----~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy 314 (507)
T 3u0r_A 247 QAVP------LFSKNVHS--TRFVTYFCEQVLP----NLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLF 314 (507)
T ss_dssp HHGG------GCBTTBCC--HHHHHHHHHHTGG----GTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHH
T ss_pred HHHH------HhccCCCh--HHHHHHHHHhhcc----chhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHH
Confidence 5555 11111111 1122222666777 56553321 22234488999999999999 455567888888
Q ss_pred HHHHHHhhh
Q 041545 326 DQCLLALDL 334 (554)
Q Consensus 326 ~~~l~aLd~ 334 (554)
+.++.-+=.
T Consensus 315 ~~L~~ymP~ 323 (507)
T 3u0r_A 315 DKLLEYMPL 323 (507)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHHCCC
Confidence 888875543
No 111
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.49 E-value=1.5e+02 Score=27.79 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=65.7
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhH--HHHHHHHhhhhhhhhhhhhcccc
Q 041545 106 LANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPL--IMENVRKKSREISTYVDVQNESN 183 (554)
Q Consensus 106 lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~--imP~ll~~l~~~~~~~~~~~~~~ 183 (554)
|+.....+...-.+++..+.+.|++.++.+.-.+|..+-.++..+|.++-..+-. ++..+...++..
T Consensus 29 icd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~----------- 97 (220)
T 1dvp_A 29 ICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST----------- 97 (220)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC-----------
T ss_pred HHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC-----------
Confidence 4444444322455666677777888889999999999999999999988654422 555444433320
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHH
Q 041545 184 EDKTQRESLMASVLITLEAVIDKLGGFLN-PYLGDITELL 222 (554)
Q Consensus 184 ~~~d~~~~l~~s~lsaL~~lv~~l~~Fls-PYL~~il~~l 222 (554)
.+..+...++..++.-.+.+++--. +|+.+....+
T Consensus 98 ----~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~L 133 (220)
T 1dvp_A 98 ----PHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTIL 133 (220)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1345677777888777777665422 4566665554
No 112
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.91 E-value=75 Score=36.89 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=59.6
Q ss_pred HHHHHHHhhccCCCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhh
Q 041545 76 MCSEVVLLVDNSTGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKAL 155 (554)
Q Consensus 76 l~~~L~~il~~~~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~i 155 (554)
+++.+..++. +..+..+|..|..||+.++-.-| . ..++..+.....+.+..||.+|+.++|-+...-....-
T Consensus 612 ~v~rlv~~L~---~~~d~~VR~gAalALGli~aGn~--~---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 612 TVPRIVQLLS---KSHNAHVRCGTAFALGIACAGKG--L---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp SHHHHTTTGG---GCSCHHHHHHHHHHHHHHTSSSC--C---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred HHHHHHHHHH---hcCCHHHHHHHHHHHHHhccCCC--c---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc
Confidence 4566666665 46688999999999999873222 2 33444444555678899999999999998766666555
Q ss_pred chhhHHHHHHHHhh
Q 041545 156 AELPLIMENVRKKS 169 (554)
Q Consensus 156 P~LP~imP~ll~~l 169 (554)
|.+..+...+.+..
T Consensus 684 ~rva~~l~~L~~~~ 697 (963)
T 4ady_A 684 PQVADINKNFLSVI 697 (963)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 66666665555544
No 113
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=43.40 E-value=4.1e+02 Score=30.06 Aligned_cols=58 Identities=5% Similarity=0.086 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhch
Q 041545 95 LKLTAVSTLEVLANRFASY---DSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGL 152 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~---~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~ 152 (554)
--.+|+.|+..+|+-+-.. .+.+..+|..++.+|...|..-...++-++++++....-
T Consensus 399 rl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi 459 (799)
T 1vsy_4 399 RIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPI 459 (799)
T ss_dssp HHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCB
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccc
Confidence 4556789999999877764 346888999999999888888889999999999886543
No 114
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=40.44 E-value=1.4e+02 Score=27.00 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=57.2
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCC--CCcc
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNST--GESN 92 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~--~~~~ 92 (554)
|-.-|++..++|+-.||.||..=+++-+. .| + .+.... +++..|..++.... ...+
T Consensus 55 l~krl~~~n~~vql~AL~LLd~~vkNCG~-----------------~F-h-~evas~---~Fl~eL~kl~~~k~~~~~~~ 112 (171)
T 1juq_A 55 LAHKIQSPQEWEALQALTVLEACMKNCGR-----------------RF-H-NEVGKF---RFLNELIKVVSPKYLGDRVS 112 (171)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHH-----------------HH-H-HHHTSH---HHHHHHHHHHCCCCCCTTSC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHcCH-----------------HH-H-HHHhhH---HHHHHHHHHhccccCCCCCC
Confidence 33467888999999999999866665331 01 1 111112 35666777776421 2446
Q ss_pred HhHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 041545 93 ISLKLTAVSTLEVLANRFASYDSVFNLCLASV 124 (554)
Q Consensus 93 ~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v 124 (554)
..+|..++..+..-+..|+. +|.+.++...+
T Consensus 113 ~~Vk~kil~li~~W~~~f~~-~~~i~~~y~~L 143 (171)
T 1juq_A 113 EKVKTKVIELLYSWTMALPE-EAKIKDAYHML 143 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHH
Confidence 78999999999999999986 46555444443
No 115
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=38.10 E-value=68 Score=33.19 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=65.2
Q ss_pred ChhHHHHHHHHHHHHhcccCCccccc-cccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHHHHH
Q 041545 23 EICTCEQALGLLCETVKDLDMAKPKH-KRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLTAVS 101 (554)
Q Consensus 23 ~~~vr~kal~ll~~kl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~Al~ 101 (554)
..+.|.|+.+|||+--......+-.+ +..+++ +-..+...|..+++++.++.. ..+.++|+-.+.
T Consensus 20 ~~~~~~~v~~lln~A~~~~~~~Kl~~L~q~~EL----------~l~~dpsLl~~fl~~il~f~~----d~~~~vRk~~a~ 85 (386)
T 3o2t_A 20 HMTTSERVVDLLNQAALITNDSKITVLKQVQEL----------IINKDPTLLDNFLDEIIAFQA----DKSIEVRKFVIG 85 (386)
T ss_dssp -CCHHHHHHHHHHHHHHCCSTHHHHHHHHHHHH----------HHTTCGGGGGGGHHHHHGGGG----CSCHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhhccChHHHHHHHHHHHHH----------HhccCHHHHHHHHHHHHHhcc----CCcHHHHHHHHH
Confidence 36789999999997655332111000 001110 000112233356677777666 236778887766
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 041545 102 TLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALV 147 (554)
Q Consensus 102 ~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~ 147 (554)
=|+..+. ++-..+..+++.+...+.++++.+.-.++.|.+++-
T Consensus 86 FieEa~~---~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 86 FIEEACK---RDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HHHHHHH---HCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6655554 322357788888888888888999999999998864
No 116
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=38.09 E-value=1.3e+02 Score=26.55 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=57.2
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccC--CCCccH
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNS--TGESNI 93 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~--~~~~~~ 93 (554)
-.-|+++.+.|.-.||.||..=+++-+. .| + .+.+.. +++..|..++... +...+.
T Consensus 44 ~krl~~~n~~vql~AL~LLe~~vkNCG~-----------------~f-h-~evas~---~Fl~eL~kl~~~k~~~~~~~~ 101 (148)
T 1mhq_A 44 AHKIQSPQEKEALYALTVLEMCMNHCGE-----------------KF-H-SEVAKF---RFLNELIKVLSPKYLGSWATG 101 (148)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHSCH-----------------HH-H-HHHTSH---HHHHHHHHTTCCSTTSCCCCH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHcCH-----------------HH-H-HHHhhH---HHHHHHHHHHccccCCCCCCH
Confidence 3467889999999999999877766442 11 0 111112 4666788888742 123467
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 041545 94 SLKLTAVSTLEVLANRFASYDSVFNLCLAS 123 (554)
Q Consensus 94 ~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~ 123 (554)
.+|..++..+..-+..|+. +|.+.++...
T Consensus 102 ~Vk~kil~li~~W~~~f~~-~p~i~~~y~~ 130 (148)
T 1mhq_A 102 KVKGRVIEILFSWTVWFPE-DIKIRDAYQM 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CchHHHHHHH
Confidence 8999999999999999976 4554444443
No 117
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=36.03 E-value=2.4e+02 Score=25.20 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhH--HHHHHHHhhhhhhhhhhhhcccccchhhHHHHH
Q 041545 116 VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPL--IMENVRKKSREISTYVDVQNESNEDKTQRESLM 193 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~--imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~ 193 (554)
.-.+++..+.+.|...++.++-.||..+-.++..||.+|-..+-. ++..+...+.. . .+..+.
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~-~--------------~~~~Vk 113 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKN-K--------------AHPKVC 113 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHT-T--------------CCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHcc-C--------------CCHHHH
Confidence 455667777788888889999999999999999999999766644 77666665542 1 123577
Q ss_pred HHHHHHHHHHHHHhcccccccHHHH
Q 041545 194 ASVLITLEAVIDKLGGFLNPYLGDI 218 (554)
Q Consensus 194 ~s~lsaL~~lv~~l~~FlsPYL~~i 218 (554)
.-++..+..-.+.++.. |++..|
T Consensus 114 ~kil~li~~W~~~f~~~--~~l~~i 136 (163)
T 1x5b_A 114 EKLKSLMVEWSEEFQKD--PQFSLI 136 (163)
T ss_dssp HHHHHHHHHHHHHTTTC--STTHHH
T ss_pred HHHHHHHHHHHHHhcCC--cccHHH
Confidence 77788887777776653 444433
No 118
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=33.99 E-value=2.5e+02 Score=31.02 Aligned_cols=152 Identities=14% Similarity=0.054 Sum_probs=85.5
Q ss_pred hHHhhhcCCh----hHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHH--HHHHHHHhhccCC
Q 041545 15 LYASLFNGEI----CTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRK--MCSEVVLLVDNST 88 (554)
Q Consensus 15 ~~~ll~~~~~----~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~--l~~~L~~il~~~~ 88 (554)
|+.+++..-. -|-...|.+|++=++.+.+ -+.+|.+ .+|.|..+++..+
T Consensus 213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s-------------------------NQ~~FrEt~~i~~L~~LL~~~~ 267 (651)
T 3grl_A 213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS-------------------------NQNFFKEGSYIQRMKPWFEVGD 267 (651)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH-------------------------HHHHHHHTTCGGGGGGGGCCCS
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH-------------------------HHHHHHHcCCHHHHHHHhCCCc
Confidence 4445555444 5677889999988877653 2667775 7788888887533
Q ss_pred CCccHh-----HHHHHHHHHHHHHHHhCCC-----Cc-hHH--HHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHH---h
Q 041545 89 GESNIS-----LKLTAVSTLEVLANRFASY-----DS-VFN--LCLASVTNSISSR--NLALASSCLRTTGALVNV---L 150 (554)
Q Consensus 89 ~~~~~~-----lrq~Al~~L~~lA~~~g~~-----~~-~~~--~~L~~v~~~l~~~--~~~l~~sallcl~~l~~v---L 150 (554)
+...|. +...++.++.++...-++- +. .+. .++..+++.+..+ ...++..++.++|.+++. .
T Consensus 268 ~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~ 347 (651)
T 3grl_A 268 ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVN 347 (651)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 332333 3444555555555543320 01 111 1344455554433 578999999999999973 2
Q ss_pred chhh----hchh---hHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 041545 151 GLKA----LAEL---PLIMENVRKKSREISTYVDVQNESNEDKTQRESLMASVLITLEAVIDK 206 (554)
Q Consensus 151 g~~~----iP~L---P~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~s~lsaL~~lv~~ 206 (554)
...+ +|+. |.++.-++..+... ..-.+..+++.++.+++..
T Consensus 348 Q~~fa~~~vp~~~~~p~li~lL~~~~~~~---------------~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 348 QDYFASVNAPSNPPRPAIVVLLMSMVNER---------------QPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp HHHHHHCEESSSSCEEHHHHHHHHHTCTT---------------SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccCCCCCCcChHHHHHHHHhccc---------------ccHHHHHHHHHHHHHHHhC
Confidence 2332 3443 33333333322211 1234567888888887753
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=33.93 E-value=1.6e+02 Score=28.49 Aligned_cols=118 Identities=13% Similarity=0.074 Sum_probs=70.9
Q ss_pred hcCChhHHHHHHHHHHHHhcccCCccccc-cccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHHH
Q 041545 20 FNGEICTCEQALGLLCETVKDLDMAKPKH-KRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKLT 98 (554)
Q Consensus 20 ~~~~~~vr~kal~ll~~kl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq~ 98 (554)
+....+-|.|+.+|||+--...+..+-.+ |+.|++ -+ ..+...+.++++.+.+|.. + .+.++|.-
T Consensus 7 ~~~~~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el---------~~-~~dp~ll~~~l~~il~~~~---~-~~~~vrk~ 72 (257)
T 3gs3_A 7 DEKTATARAKVVDWCNELVIASPSTKCELLAKVQET---------VL-GSCAELAEEFLESVLSLAH---D-SNMEVRKQ 72 (257)
T ss_dssp --CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---------HT-TTTGGGHHHHHHHHHGGGG---C-SCHHHHHH
T ss_pred ccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH---------HH-ccCHhHHHHHHHHHHHhcc---C-ChHHHHHH
Confidence 34456789999999997655333111000 111111 01 1123345567777777654 2 46778876
Q ss_pred HHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhh
Q 041545 99 AVSTLEVLANRFASYDS-VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKAL 155 (554)
Q Consensus 99 Al~~L~~lA~~~g~~~~-~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~i 155 (554)
...=++ +.|.+ ++ ....+++.+...+.++++.+.-.++.|.+.+-+..=..++
T Consensus 73 ~~~Fi~---e~~~~-k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 73 VVAFVE---QVCKV-KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHH---HHHHH-CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH---HHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655444 44433 34 6778888888888888899999999999988765444443
No 120
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=32.38 E-value=2.5e+02 Score=24.33 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=55.9
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHHhhhhhhhhhhhhcccc
Q 041545 106 LANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRKKSREISTYVDVQNESN 183 (554)
Q Consensus 106 lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~~l~~~~~~~~~~~~~~ 183 (554)
||....++...-.+++..+.+.|.+.++.+.-.|+..+-.++..||.+|-..+ ..++..+.+.++.
T Consensus 29 icD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~------------ 96 (140)
T 3ldz_A 29 ICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK------------ 96 (140)
T ss_dssp HHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH------------
T ss_pred HHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc------------
Confidence 34444433223445555566666667788888888899999999999987655 5566666554432
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhcc
Q 041545 184 EDKTQRESLMASVLITLEAVIDKLGG 209 (554)
Q Consensus 184 ~~~d~~~~l~~s~lsaL~~lv~~l~~ 209 (554)
.+..+..-++..+..--+.+++
T Consensus 97 ----~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 97 ----GHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHTT
T ss_pred ----CCHHHHHHHHHHHHHHHHHhCC
Confidence 1234666677777666666654
No 121
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=27.93 E-value=3.2e+02 Score=29.79 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=70.3
Q ss_pred hhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhHHH
Q 041545 18 SLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISLKL 97 (554)
Q Consensus 18 ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~lrq 97 (554)
||.++...+.-|+++++..-+....... ...+..+.+-|..++..|..++. -.....+|+
T Consensus 325 lL~~~~~~~~~kGL~Ll~~ll~~l~~~s-----------------l~~~~ld~~~~~~~~q~L~~v~~---~~P~~~lR~ 384 (596)
T 4f52_E 325 FLQRTEESVISKGLELLENSLLRIEDNS-----------------LLYQYLEIKSFLTVPQGLVKVMT---LCPIETLRK 384 (596)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHSSCTTC-----------------BCGGGGGSHHHHHHHHHHHHHHH---HCSCHHHHH
T ss_pred HHcCCchHHHHhHHHHHHHHHHhccCcc-----------------CChhhhchhhHHHHHHHHHHHHH---HCCcHHHHH
Confidence 8999999999999999887666544311 13344556778888888888877 456778999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 041545 98 TAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTG 144 (554)
Q Consensus 98 ~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~ 144 (554)
.|...+..+-.+|+.+. -|. ++..+++. ..++.+++.++-.+=
T Consensus 385 ~a~~vl~~~I~~~~~e~-R~~-iL~~LL~~--~~~~~v~~~lI~~~K 427 (596)
T 4f52_E 385 KSLAMLQLYINKLDSQG-KYT-LFRCLLNT--SNHSGVEAFIIQNIK 427 (596)
T ss_dssp HHHHHHHHHHHHBCHHH-HHH-HHHHHHHH--HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHH-HHH-HHHHHHhc--CCChHHHHHHHHHHH
Confidence 99999999999998542 222 22222221 245666655554443
No 122
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=27.34 E-value=3.2e+02 Score=24.06 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHhchhhhchhhH--HHHH-HHHhhhhhhhhhhhhcccccchhhHHH
Q 041545 116 VFNLCLASVTNSIS-SRNLALASSCLRTTGALVNVLGLKALAELPL--IMEN-VRKKSREISTYVDVQNESNEDKTQRES 191 (554)
Q Consensus 116 ~~~~~L~~v~~~l~-~~~~~l~~sallcl~~l~~vLg~~~iP~LP~--imP~-ll~~l~~~~~~~~~~~~~~~~~d~~~~ 191 (554)
.-.+++..+.+.|+ ..++.++-.|+..+-.++..||.+|-..+-. ++.. +++.+... .+....
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k-------------~~~~~~ 116 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPK-------------NNPPTI 116 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTT-------------TCCCHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccC-------------CCCcHH
Confidence 45566777777786 4788889999999999999999999765533 5555 44444210 011235
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 041545 192 LMASVLITLEAVIDKLGG 209 (554)
Q Consensus 192 l~~s~lsaL~~lv~~l~~ 209 (554)
+..-++..+..--+.+++
T Consensus 117 Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 117 VHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 667777777777666553
No 123
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=26.86 E-value=3.3e+02 Score=23.96 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHH------HHHHHHHHhhccC-
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFR------KMCSEVVLLVDNS- 87 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~------~l~~~L~~il~~~- 87 (554)
+-.-|+++.++|.-.||.||..=+++-+ +.|. +++..|..++...
T Consensus 53 l~krl~~~n~~v~l~AL~LLe~cvkNCG----------------------------~~fh~eias~~Fl~eL~kl~~~k~ 104 (149)
T 3g2s_A 53 LAHKIQSPQEWEAIQALTVLETCMKSCG----------------------------KRFHDEVGKFRFLNELIKVVSPKY 104 (149)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCC----------------------------HHHHHHHTSHHHHHHHHHHHCTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcC----------------------------HHHHHHHhhHHHHHHHHHHHcccc
Q ss_pred -CCCccHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 041545 88 -TGESNISLKLTAVSTLEVLANRFASYDSVFNLCLASVTN 126 (554)
Q Consensus 88 -~~~~~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~ 126 (554)
++..+..+|...+..+..-+..|+. +|.+.++...+..
T Consensus 105 ~~~~~~~~Vk~kil~li~~W~~~f~~-~p~i~~~Y~~Lk~ 143 (149)
T 3g2s_A 105 LGSRTSEKVKNKILELLYSWTVGLPE-EVKIAEAYQMLKK 143 (149)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
No 124
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=26.53 E-value=3.4e+02 Score=24.10 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=51.9
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHhH
Q 041545 16 YASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNISL 95 (554)
Q Consensus 16 ~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~l 95 (554)
-.-|++..++|+-.||.||..=+++-+. .| + .+.... +++..|..++.. ..+..+
T Consensus 58 ~krl~~~n~~vql~AL~LLd~~vkNcG~-----------------~F-h-~evas~---~Fl~el~~l~~~---~~~~~V 112 (163)
T 1x5b_A 58 MKRVNHKVPHVALQALTLLGACVANCGK-----------------IF-H-LEVCSR---DFATEVRAVIKN---KAHPKV 112 (163)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHTCH-----------------HH-H-HHHTSH---HHHHHHHHHHHT---TCCHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhhH-----------------HH-H-HHHhhH---HHHHHHHHHHcc---CCCHHH
Confidence 3457888999999999999877766442 01 1 122222 355566677763 345689
Q ss_pred HHHHHHHHHHHHHHhCCCCchH
Q 041545 96 KLTAVSTLEVLANRFASYDSVF 117 (554)
Q Consensus 96 rq~Al~~L~~lA~~~g~~~~~~ 117 (554)
|..++..+..-+..|+.+ |.+
T Consensus 113 k~kil~li~~W~~~f~~~-~~l 133 (163)
T 1x5b_A 113 CEKLKSLMVEWSEEFQKD-PQF 133 (163)
T ss_dssp HHHHHHHHHHHHHHTTTC-STT
T ss_pred HHHHHHHHHHHHHHhcCC-ccc
Confidence 999999999999999874 543
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.25 E-value=2.7e+02 Score=25.85 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=49.9
Q ss_pred hHHhhhcCChhHHHHHHHHHHHHhcccCCccccccccccCCCCCCccccccCccchHHHHHHHHHHHHhhccCCCCccHh
Q 041545 15 LYASLFNGEICTCEQALGLLCETVKDLDMAKPKHKRRRELDPDSNSRWFHLDDSAFESFRKMCSEVVLLVDNSTGESNIS 94 (554)
Q Consensus 15 ~~~ll~~~~~~vr~kal~ll~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~L~~il~~~~~~~~~~ 94 (554)
|-.-|++..++|.-.||.||..=+++-+. .| + .+..... ++..|..++.. ..+..
T Consensus 47 l~krl~~~n~~~~l~aL~Lle~~vkNcG~-----------------~f-~-~eva~~~---fl~~l~~l~~~---~~~~~ 101 (220)
T 1dvp_A 47 IKKKMNSPNPHSSCYSLLVLESIVKNCGA-----------------PV-H-EEVFTKE---NCEMFSSFLES---TPHEN 101 (220)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHH-----------------HH-H-HHHSSHH---HHHHHHHHHHH---CSCHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccCH-----------------HH-H-HHHHhHH---HHHHHHHHhcC---CCcHH
Confidence 33467888999999999999976666431 01 1 1222222 44455566653 34678
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 041545 95 LKLTAVSTLEVLANRFASY 113 (554)
Q Consensus 95 lrq~Al~~L~~lA~~~g~~ 113 (554)
+|..++.-+..-+..|+.+
T Consensus 102 Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 102 VRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999999999864
No 126
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=25.17 E-value=3.7e+02 Score=24.07 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHH
Q 041545 116 VFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRKKSREISTYVDVQNESNEDKTQRESLM 193 (554)
Q Consensus 116 ~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~ 193 (554)
.-.+++..+.+.|++.++.+.-.||..+-.++..||.+|-..+ ..++..+++.+... +. ....+..+.
T Consensus 47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k-~~---------~~~~~~~Vk 116 (171)
T 1juq_A 47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPK-YL---------GDRVSEKVK 116 (171)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCC-CC---------CTTSCHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccc-cC---------CCCCCHHHH
Confidence 3455666777778888999999999999999999999987555 34566666655321 10 011245688
Q ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHH
Q 041545 194 ASVLITLEAVIDKLGGFLNPYLGDITELL 222 (554)
Q Consensus 194 ~s~lsaL~~lv~~l~~FlsPYL~~il~~l 222 (554)
.-++.++..--+.++. .|++.++-..+
T Consensus 117 ~kil~li~~W~~~f~~--~~~i~~~y~~L 143 (171)
T 1juq_A 117 TKVIELLYSWTMALPE--EAKIKDAYHML 143 (171)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CcHHHHHHHHH
Confidence 8888888888888776 36666665554
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.60 E-value=4.5e+02 Score=24.52 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHH
Q 041545 117 FNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRKKSREISTYVDVQNESNEDKTQRESLMA 194 (554)
Q Consensus 117 ~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~ 194 (554)
-.+++..+.+.|++.++.+.-.||..+-.++..+|.++-..+ ..++..+.++++.. .+..+..
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~---------------~~~~Vk~ 107 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ---------------VEVNVRN 107 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC---------------CCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC---------------CCHHHHH
Confidence 456667777778788899999999999999999999876554 34444444433220 1234666
Q ss_pred HHHHHHHHHHHHhcc
Q 041545 195 SVLITLEAVIDKLGG 209 (554)
Q Consensus 195 s~lsaL~~lv~~l~~ 209 (554)
-++..++.-.+.++.
T Consensus 108 kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 108 KILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCC
Confidence 777777776666654
No 128
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.48 E-value=4.1e+02 Score=23.19 Aligned_cols=93 Identities=13% Similarity=-0.055 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchh--hHHHHHHHHhhhhhhhhhhhhcccccchhhHHHHHH
Q 041545 117 FNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAEL--PLIMENVRKKSREISTYVDVQNESNEDKTQRESLMA 194 (554)
Q Consensus 117 ~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~L--P~imP~ll~~l~~~~~~~~~~~~~~~~~d~~~~l~~ 194 (554)
-.+++..+...|++.++.+.-.|+..+-.++..||.+|-..+ -.++..+.+.+... +. ....+..+..
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k-~~---------~~~~~~~Vk~ 105 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPK-YL---------GSWATGKVKG 105 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCS-TT---------SCCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccc-cC---------CCCCCHHHHH
Confidence 344555556666778888999999999999999999986665 45666666655421 00 0012346778
Q ss_pred HHHHHHHHHHHHhcccccccHHHHHHH
Q 041545 195 SVLITLEAVIDKLGGFLNPYLGDITEL 221 (554)
Q Consensus 195 s~lsaL~~lv~~l~~FlsPYL~~il~~ 221 (554)
-++..++.--+.+++. |.+.++-..
T Consensus 106 kil~li~~W~~~f~~~--p~i~~~y~~ 130 (148)
T 1mhq_A 106 RVIEILFSWTVWFPED--IKIRDAYQM 130 (148)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC--chHHHHHHH
Confidence 8888888877776652 444444444
No 129
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=20.81 E-value=7.8e+02 Score=26.19 Aligned_cols=71 Identities=7% Similarity=0.142 Sum_probs=49.3
Q ss_pred cHhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhchhhhchhhHHHHHHHHhhhh
Q 041545 92 NISLKLTAVSTLEVLANRFASYDSVFNLCLASVTNSISSRNLALASSCLRTTGALVNVLGLKALAELPLIMENVRKKSRE 171 (554)
Q Consensus 92 ~~~lrq~Al~~L~~lA~~~g~~~~~~~~~L~~v~~~l~~~~~~l~~sallcl~~l~~vLg~~~iP~LP~imP~ll~~l~~ 171 (554)
....|+-|..=+....+.|+. .-...+....+...+++..+|..++-.+..+|+. -++|++.-.+.+.|+.
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~---l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqt 111 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE---LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQT 111 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhc
Confidence 456777776655555555542 3445666777777888999999999888888865 4577777777776654
Done!