BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041546
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/519 (46%), Positives = 313/519 (60%), Gaps = 86/519 (16%)
Query: 39 ESLIQCLSMH-SDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVS 97
E+ ++C S H +N + K++YTQ + Y S+LN +IQNLRF + TPKP VI+TP + S
Sbjct: 5 ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 98 QVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQA 157
+QA I CSKK GLQIR RSGGHD EG+SY+S VPFVV+DL N+ I +D QTAWV+A
Sbjct: 65 HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 158 GATLGQLYYRIAEKRYG-----------------------AMLRKYGLAADNIVDARLTD 194
GATLG++YY I EK A++R YGLAADNI+DA L +
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 195 ANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNAT 253
+G++LDRKSMGEDLFWAI+GGG G +FG+I WK++LV VPS T F V +++E
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGG-GENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV 243
Query: 254 KIVHKWQ----------------------------------------------LLPLMQE 267
K+ +KWQ L+ LM +
Sbjct: 244 KLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNK 303
Query: 268 SFPELGLTKEDCIEMSWIESAHDLAG---FNKGD-PLDLLLDRNSRTNGVAEDAATNGFF 323
SFPELG+ K DC E SWI++ +G FN + ++LLDR+ A F
Sbjct: 304 SFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRS---------AGKKTAF 354
Query: 324 KSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIY 383
K DYVK+PIPE A I + YEED +L PYGG M EISES P+PHRAG +Y
Sbjct: 355 SIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMY 414
Query: 384 QILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIG-TNNRGHTSIK 442
++ YT +W + E ++ HI+W+R +Y+ TPYVS+NPR AY+NYRDLD+G TN+ +
Sbjct: 415 ELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYT 474
Query: 443 QASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPL 481
QA IWG KYF NF RLV VKT VDP +FF+NEQSIPPL
Sbjct: 475 QARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/484 (41%), Positives = 282/484 (58%), Gaps = 73/484 (15%)
Query: 58 IYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRS 117
+Y + + +Y+SV + +++N++F + T KP IITP + S +QAA+ C ++HG++IRVRS
Sbjct: 26 LYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASHIQAAVVCGRRHGMRIRVRS 85
Query: 118 GGHDFEGLSYVSHV--PFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRIAEK--RY 173
GGHD+EGLSY S PF V+D+ + +S+D TAWV +GA LG LYY IA+ +
Sbjct: 86 GGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVDSGAQLGDLYYGIAKASPKL 145
Query: 174 G---------------------AMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWA 212
G +LRKYG AADN++DA++ DA GRLLDRK+MGED FWA
Sbjct: 146 GFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVVDAQGRLLDRKAMGEDHFWA 205
Query: 213 IQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQ------------ 260
I+GGG G SFG++ W+V+L+ VP VT F+V + +++ A +V KWQ
Sbjct: 206 IRGGG-GESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDLVTKWQTVAPALPDDLMI 264
Query: 261 ---------------------LLPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDP 299
L+ LM FPELG+ C EM+WIES + KG
Sbjct: 265 RIMAMGQGAMFEALYLGTCKDLVLLMTARFPELGMNATHCKEMTWIESVPYIPMGPKGTV 324
Query: 300 LDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLV 359
DLL +RT+ + F K KSDYV +PIP++ +E I+ + M++
Sbjct: 325 RDLL----NRTSNI------KAFGKYKSDYVLEPIPKSDWEKIFTWLVKPG--AGVMIMD 372
Query: 360 PYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENP 419
PYGG ++ + ES TP+P R+G ++ I Y V W + + W R +Y MTPYVS+NP
Sbjct: 373 PYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAALPTQWTRDIYDFMTPYVSKNP 432
Query: 420 REAYINYRDLDIGTNN-RGHTSI-KQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQS 477
R+AY+NYRDLD+G N G+ S +WG KYFK NF+RL K +DP D+F+NEQS
Sbjct: 433 RQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLARTKGKIDPEDYFRNEQS 492
Query: 478 IPPL 481
IPPL
Sbjct: 493 IPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 201/508 (39%), Positives = 288/508 (56%), Gaps = 75/508 (14%)
Query: 34 PVADLESLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITP 93
P A E + CL +++Y + + +Y SVL +I+N R+S+P+ KP IITP
Sbjct: 4 PPAAKEDFLGCLVKEIP----PRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITP 59
Query: 94 LDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVP--FVVIDLLNLSEISVDAAEQ 151
VS +Q+A+ C ++H ++IRVRSGGHD+EGLSY S P F V+DL + + VD +
Sbjct: 60 TQVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKAR 119
Query: 152 TAWVQAGATLGQLYYRIAEK-----------------------RYGAMLRKYGLAADNIV 188
TAWV +GA LG+LYY I + +G +LRKYG+AA+N++
Sbjct: 120 TAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVI 179
Query: 189 DARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSL 248
D +L DANG+L D+KSMG+D FWA++GGG G SFG++V W+V+L+ VP TVT F++S+++
Sbjct: 180 DVKLVDANGKLHDKKSMGDDHFWAVRGGG-GESFGIVVAWQVKLLPVPPTVTIFKISKTV 238
Query: 249 EQNATKIVHKWQ---------------------------------LLPLMQESFPELGLT 275
+ A I++KWQ L PLM FPELG+
Sbjct: 239 SEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMN 298
Query: 276 KEDCIEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIP 335
C EMSWI+S + ++ D LL+R + AE KSDYV QP P
Sbjct: 299 PSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAE---------YKSDYVYQPFP 349
Query: 336 ENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDE 395
+ +E I + + + G M+ PYG +S ES TP+PHR G ++ I Y W
Sbjct: 350 KTVWEQILNTWLVKPG-AGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPG 408
Query: 396 TSQSHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGH--TSIKQASIWGSKYFK 453
+ + + W + +Y++M PYVS+NPR+AY NYRD+D+G N + ++ +WG KYFK
Sbjct: 409 AAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFK 468
Query: 454 NNFKRLVHVKTMVDPYDFFKNEQSIPPL 481
NF+RL K VDP D+F+NEQSIPPL
Sbjct: 469 GNFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 193/511 (37%), Positives = 280/511 (54%), Gaps = 84/511 (16%)
Query: 41 LIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQ 100
L+ CL+ + + V +S ++ L+ SIQN F KP II P ++
Sbjct: 2 LLSCLTFNGVRNH--TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELS 59
Query: 101 AAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGAT 160
I+C +K IR+RSGGH +EGLSY S PF++IDL+NL+ +S+D +TAWV++G+T
Sbjct: 60 NTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGST 119
Query: 161 LGQLYYRIAE--KRYG---------------------AMLRKYGLAADNIVDARLTDANG 197
LG+LYY I E + G M RKYGLAADN+VDA L DANG
Sbjct: 120 LGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179
Query: 198 RLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNATKIV 256
+LDR++MGED+FWAI+GGG G +G I WK++L+ VP VT FRV++++ AT ++
Sbjct: 180 AILDRQAMGEDVFWAIRGGGGGV-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLL 238
Query: 257 HKWQLLPLMQES-------------------------------------FPELGLTKEDC 279
HKWQ + E FPELGL +ED
Sbjct: 239 HKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 298
Query: 280 IEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAF 339
+EMSW ES LAG L+ + N+R E A FK+K D K+P+P AF
Sbjct: 299 LEMSWGESFAYLAG------LETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSKAF 347
Query: 340 EGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQ- 398
G+ + +E F+ L +GG+MS+IS TP+PHR+G + Y V W + E +
Sbjct: 348 YGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 399 -SHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASI-----WGSKYF 452
+DW+ ++Y M P+VS+NPR Y+N+ DLD+G + G+ ++ +I WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 453 KNNFKRLVHVKTMVDPYDFFKNEQSIPPLTS 483
+N++RL+ KT++DP + F + QSIPP+ +
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 193/512 (37%), Positives = 281/512 (54%), Gaps = 84/512 (16%)
Query: 41 LIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQ 100
L+ CL+ + + V +S ++ L+ SIQN F KP II P ++
Sbjct: 27 LLSCLTFNGVRNH--TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELS 84
Query: 101 AAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGAT 160
I+C +K IR+RSGGH +EGLSY S PF++IDL+NL+ +S+D +TAWV++G+T
Sbjct: 85 NTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGST 144
Query: 161 LGQLYYRIAE--KRYG---------------------AMLRKYGLAADNIVDARLTDANG 197
LG+LYY I E + G M RKYGLAADN+VDA L DANG
Sbjct: 145 LGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 204
Query: 198 RLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNATKIV 256
+LDR++MGED+FWAI+GGG G +G I WK++L+ VP VT FRV++++ AT ++
Sbjct: 205 AILDRQAMGEDVFWAIRGGGGGV-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLL 263
Query: 257 HKWQLLPLMQES-------------------------------------FPELGLTKEDC 279
HKWQ + E FPELGL +ED
Sbjct: 264 HKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 323
Query: 280 IEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAF 339
+EMSW ES LAG L+ + N+R E A FK+K D K+P+P AF
Sbjct: 324 LEMSWGESFAYLAG------LETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSKAF 372
Query: 340 EGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQ- 398
G+ + +E F+ L +GG+MS+IS TP+PHR+G + Y V W + E +
Sbjct: 373 YGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 430
Query: 399 -SHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASI-----WGSKYF 452
+DW+ ++Y M P+VS+NPR Y+N+ DLD+G + G+ ++ +I WG YF
Sbjct: 431 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 490
Query: 453 KNNFKRLVHVKTMVDPYDFFKNEQSIPPLTSW 484
+N++RL+ KT++DP + F + QSIPP+ ++
Sbjct: 491 LSNYERLIRAKTLIDPNNVFNHPQSIPPMANF 522
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 328 bits (842), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 193/511 (37%), Positives = 280/511 (54%), Gaps = 84/511 (16%)
Query: 41 LIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQ 100
L+ CL+ + + V +S ++ L+ SIQN F KP II P ++
Sbjct: 8 LLSCLTFNGVRNH--TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELS 65
Query: 101 AAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGAT 160
I+C +K IR+RSGGH +EGLSY S PF++IDL+NL+ +S+D +TAWV++G+T
Sbjct: 66 NTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGST 125
Query: 161 LGQLYYRIAE--KRYG---------------------AMLRKYGLAADNIVDARLTDANG 197
LG+LYY I E + G M RKYGLAADN+VDA L DANG
Sbjct: 126 LGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANG 185
Query: 198 RLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNATKIV 256
+LDR++MGED+FWAI+GGG G +G I WK++L+ VP VT FRV++++ AT ++
Sbjct: 186 AILDRQAMGEDVFWAIRGGGGGV-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLL 244
Query: 257 HKWQLLPLMQES-------------------------------------FPELGLTKEDC 279
HKWQ + E FPELGL +ED
Sbjct: 245 HKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 304
Query: 280 IEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAF 339
+EMSW ES LAG L+ + N+R E A FK+K D K+P+P AF
Sbjct: 305 LEMSWGESFAYLAG------LETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSKAF 353
Query: 340 EGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQ- 398
G+ + +E F+ L +GG+MS+IS TP+PHR+G + Y V W + E +
Sbjct: 354 YGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 411
Query: 399 -SHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASI-----WGSKYF 452
+DW+ ++Y M P+VS+NPR Y+N+ DLD+G + G+ ++ +I WG YF
Sbjct: 412 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 471
Query: 453 KNNFKRLVHVKTMVDPYDFFKNEQSIPPLTS 483
+N++RL+ KT++DP + F + QSIPP+ +
Sbjct: 472 LSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 502
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 328 bits (842), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 193/511 (37%), Positives = 280/511 (54%), Gaps = 84/511 (16%)
Query: 41 LIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQ 100
L+ CL+ + + V +S ++ L+ SIQN F KP II P ++
Sbjct: 8 LLSCLTFNGVRNH--TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELS 65
Query: 101 AAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGAT 160
I+C +K IR+RSGGH +EGLSY S PF++IDL+NL+ +S+D +TAWV++G+T
Sbjct: 66 NTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGST 125
Query: 161 LGQLYYRIAE--KRYG---------------------AMLRKYGLAADNIVDARLTDANG 197
LG+LYY I E + G M RKYGLAADN+VDA L DANG
Sbjct: 126 LGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 185
Query: 198 RLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNATKIV 256
+LDR++MGED+FWAI+GGG G +G I WK++L+ VP VT FRV++++ AT ++
Sbjct: 186 AILDRQAMGEDVFWAIRGGGGGV-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLL 244
Query: 257 HKWQLLPLMQES-------------------------------------FPELGLTKEDC 279
HKWQ + E FPELGL +ED
Sbjct: 245 HKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 304
Query: 280 IEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAF 339
+EMSW ES LAG L+ + N+R E A FK+K D K+P+P AF
Sbjct: 305 LEMSWGESFAYLAG------LETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSKAF 353
Query: 340 EGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQ- 398
G+ + +E F+ L +GG+MS+IS TP+PHR+G + Y V W + E +
Sbjct: 354 YGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 411
Query: 399 -SHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASI-----WGSKYF 452
+DW+ ++Y M P+VS+NPR Y+N+ DLD+G + G+ ++ +I WG YF
Sbjct: 412 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 471
Query: 453 KNNFKRLVHVKTMVDPYDFFKNEQSIPPLTS 483
+N++RL+ KT++DP + F + QSIPP+ +
Sbjct: 472 LSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 502
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 328 bits (841), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 193/509 (37%), Positives = 279/509 (54%), Gaps = 84/509 (16%)
Query: 41 LIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQ 100
L+ CL+ + + V +S ++ L+ SIQN F KP II P ++
Sbjct: 2 LLSCLTFNGVRNH--TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELS 59
Query: 101 AAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGAT 160
I+C +K IR+RSGGH +EGLSY S PF++IDL+NL+ +S+D +TAWV++G+T
Sbjct: 60 NTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGST 119
Query: 161 LGQLYYRIAE--KRYG---------------------AMLRKYGLAADNIVDARLTDANG 197
LG+LYY I E + G M RKYGLAADN+VDA L DANG
Sbjct: 120 LGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179
Query: 198 RLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNATKIV 256
+LDR++MGED+FWAI+GGG G +G I WK++L+ VP VT FRV++++ AT ++
Sbjct: 180 AILDRQAMGEDVFWAIRGGGGGV-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLL 238
Query: 257 HKWQLLPLMQES-------------------------------------FPELGLTKEDC 279
HKWQ + E FPELGL +ED
Sbjct: 239 HKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 298
Query: 280 IEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAF 339
+EMSW ES LAG L+ + N+R E A FK+K D K+P+P AF
Sbjct: 299 LEMSWGESFAYLAG------LETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSKAF 347
Query: 340 EGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQ- 398
G+ + +E F+ L +GG+MS+IS TP+PHR+G + Y V W + E +
Sbjct: 348 YGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 399 -SHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASI-----WGSKYF 452
+DW+ ++Y M P+VS+NPR Y+N+ DLD+G + G+ ++ +I WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 453 KNNFKRLVHVKTMVDPYDFFKNEQSIPPL 481
+N++RL+ KT++DP + F + QSIPP+
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 328 bits (840), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 193/509 (37%), Positives = 279/509 (54%), Gaps = 84/509 (16%)
Query: 41 LIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQ 100
L+ CL+ + + V +S ++ L+ SIQN F KP II P ++
Sbjct: 2 LLSCLTFNGVRNH--TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELS 59
Query: 101 AAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGAT 160
I+C +K IR+RSGGH +EGLSY S PF++IDL+NL+ +S+D +TAWV++G+T
Sbjct: 60 NTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGST 119
Query: 161 LGQLYYRIAE--KRYG---------------------AMLRKYGLAADNIVDARLTDANG 197
LG+LYY I E + G M RKYGLAADN+VDA L DANG
Sbjct: 120 LGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179
Query: 198 RLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNATKIV 256
+LDR++MGED+FWAI+GGG G +G I WK++L+ VP VT FRV++++ AT ++
Sbjct: 180 AILDRQAMGEDVFWAIRGGGGGV-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLL 238
Query: 257 HKWQLLPLMQES-------------------------------------FPELGLTKEDC 279
HKWQ + E FPELGL +ED
Sbjct: 239 HKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 298
Query: 280 IEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAF 339
+EMSW ES LAG L+ + N+R E A FK+K D K+P+P AF
Sbjct: 299 LEMSWGESFAYLAG------LETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSKAF 347
Query: 340 EGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQ- 398
G+ + +E F+ L +GG+MS+IS TP+PHR+G + Y V W + E +
Sbjct: 348 YGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 405
Query: 399 -SHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASI-----WGSKYF 452
+DW+ ++Y M P+VS+NPR Y+N+ DLD+G + G+ ++ +I WG YF
Sbjct: 406 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 465
Query: 453 KNNFKRLVHVKTMVDPYDFFKNEQSIPPL 481
+N++RL+ KT++DP + F + QSIPP+
Sbjct: 466 LSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 325 bits (832), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 192/509 (37%), Positives = 278/509 (54%), Gaps = 84/509 (16%)
Query: 41 LIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQ 100
L+ CL+ + + V +S ++ L+ SIQN F KP II P ++
Sbjct: 5 LLSCLTFNGVRNH--TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELS 62
Query: 101 AAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGAT 160
I+C +K IR+RSGG +EGLSY S PF++IDL+NL+ +S+D +TAWV++G+T
Sbjct: 63 NTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGST 122
Query: 161 LGQLYYRIAE--KRYG---------------------AMLRKYGLAADNIVDARLTDANG 197
LG+LYY I E + G M RKYGLAADN+VDA L DANG
Sbjct: 123 LGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 182
Query: 198 RLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLE-QNATKIV 256
+LDR++MGED+FWAI+GGG G +G I WK++L+ VP VT FRV++++ AT ++
Sbjct: 183 AILDRQAMGEDVFWAIRGGGGGV-WGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLL 241
Query: 257 HKWQLLPLMQES-------------------------------------FPELGLTKEDC 279
HKWQ + E FPELGL +ED
Sbjct: 242 HKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 301
Query: 280 IEMSWIESAHDLAGFNKGDPLDLLLDRNSRTNGVAEDAATNGFFKSKSDYVKQPIPENAF 339
+EMSW ES LAG L+ + N+R E A FK+K D K+P+P AF
Sbjct: 302 LEMSWGESFAYLAG------LETVSQLNNRFLKFDERA-----FKTKVDLTKEPLPSKAF 350
Query: 340 EGIYDNFYEEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIYQILYTVTWGEDETSQ- 398
G+ + +E F+ L +GG+MS+IS TP+PHR+G + Y V W + E +
Sbjct: 351 YGLLERLSKE--PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKK 408
Query: 399 -SHIDWIRRLYSHMTPYVSENPREAYINYRDLDIGTNNRGHTSIKQASI-----WGSKYF 452
+DW+ ++Y M P+VS+NPR Y+N+ DLD+G + G+ ++ +I WG YF
Sbjct: 409 TEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYF 468
Query: 453 KNNFKRLVHVKTMVDPYDFFKNEQSIPPL 481
+N++RL+ KT++DP + F + QSIPP+
Sbjct: 469 LSNYERLIRAKTLIDPNNVFNHPQSIPPM 497
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 113/476 (23%), Positives = 191/476 (40%), Gaps = 92/476 (19%)
Query: 86 KPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEIS 145
+P V+ QV A+ + G +I VRSGGH FEG V VID+ + ++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAV-RAVIDMSQMRQVF 113
Query: 146 VDAAEQTAWVQAGATLGQLYYRIAEKRYGAML-----------------------RKYGL 182
D+ ++ V+ GATLG+ YR +G + R+ G+
Sbjct: 114 YDSGKRAFAVEPGATLGET-YRALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDGV 172
Query: 183 AADNI--VDARLTDANGRLLDRKSMG--------EDLFWAIQGGGIGASFGVIVPWKVRL 232
AD++ V+ + DA+GR RK + +L+WA GG G +FG++ + R
Sbjct: 173 VADHLYAVEVVVVDASGRA--RKVVATSAADDPNRELWWA-HTGGGGGNFGIVTRYWFRT 229
Query: 233 VIVPSTVTRFRVSRSLEQNATKIVHKWQLLPLMQESFPEL-------------------- 272
T + ++ IV W L +E+F +
Sbjct: 230 PGATGTDPSQLLPKAPTSTLRHIV-TWDWSALTEEAFTRIIDNHGAWHQSNSAAGTPYAS 288
Query: 273 ------------GLTKEDCIEMSWIESAHDL-----AGFNKGDPLDLLLDRNSR---TNG 312
G D ++ A L A N+G ++ + R++
Sbjct: 289 MHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTEPWLRAT 348
Query: 313 VAEDAATNGF--FKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISE 370
+A T GF KSK Y+++P +Y + + + L YGGK++ + E
Sbjct: 349 LANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLYSYGGKVNSVPE 408
Query: 371 SETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHM------TPYVSENPREAYI 424
+ T R +I ++ + TW + +++ WIR +Y + P + +I
Sbjct: 409 TATATAQR-DSIIKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTFI 467
Query: 425 NYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPP 480
NY D+D+ + R +TS W + Y+K N+ RL VK DP D F++ S+ P
Sbjct: 468 NYPDVDL-VDERWNTS---GVPWYTLYYKGNYPRLQKVKARWDPRDVFRHALSVRP 519
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/471 (21%), Positives = 190/471 (40%), Gaps = 111/471 (23%)
Query: 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSE-IS 145
P I + +Q+A++C+KK L++ +SGGH + + +++ L + + IS
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVIS 96
Query: 146 VDAAEQTAWVQAGATLGQL-------YYR---------------IAEKRYGAMLRKYGLA 183
+ A V+ GA LG L Y R A +G +GLA
Sbjct: 97 YNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMHGLA 156
Query: 184 ADNIVDARLTDANGRLLDRKSM-GEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRF 242
D++V + A+GR+++ + DLFW I+G G++FG++ WK+ P +TRF
Sbjct: 157 VDSVVGVTVVLADGRIVEASATENADLFWGIKGA--GSNFGIVAVWKLATFPAPKVLTRF 214
Query: 243 RVSRSLEQNATKIV---------------------------------------HKWQ--L 261
V+ + + + + +W+
Sbjct: 215 GVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAAF 274
Query: 262 LPLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGD-----PLDLLLDRNSRTNGVAED 316
PL+ ++ P G ++WIES + F+ D P++ ++ + D
Sbjct: 275 QPLL-DTLPA-GYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGD 332
Query: 317 AATN--GFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGKMSEISE---S 371
A N ++ S+ VK D F+ F L +GGK S++++ +
Sbjct: 333 AVKNFVDYYFDVSNKVK------------DRFW-------FYQLDVHGGKNSQVTKVTNA 373
Query: 372 ETPYPHRAGNIYQILYTVTWGEDET-SQSHIDWIRRLYSHMTPYVSENPREAYINYRDLD 430
ET YPHR ++ I + + ++T ++ ++ + +T + ++ YINY D
Sbjct: 374 ETAYPHR-DKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPR 432
Query: 431 IGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPL 481
+ +R + + Y+ N RL +K DP D F Q++ P+
Sbjct: 433 M---DRDYAT--------KVYYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 324 KSKSDYVKQPIPENAFEGIYDNFYEEDG-ETAFMLLVPYGGKMSEISESETPYPHRAGNI 382
K+K+ Y+++ + + + +Y+N DG + + L+ YGGK++ + + T P R I
Sbjct: 365 KTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-I 423
Query: 383 YQILYTVTWGEDETSQSHIDWIRRLYSHM------TPYVSENPREAYINYRDLDIGTNNR 436
++ Y W H+ W+R+LY+ + P ++ AYINY D D+
Sbjct: 424 LKVNYITGWANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLADPGL 483
Query: 437 GHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPP 480
+ + W Y+K N RL VK DP + F + SI P
Sbjct: 484 NTSGVP----WHDLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 70 LNFSIQ--NLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSY 127
LN ++ N RF+ +P I QV A++ + + G ++ VRSGGH FE
Sbjct: 43 LNLKLRGANSRFNG----EPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVD 98
Query: 128 VSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLYYRI 168
V V+ID+ L+EI+ D + ++ G TL ++Y ++
Sbjct: 99 NPDVK-VIIDMSLLTEIAYDPSMNAFLIEPGNTLSEVYEKL 138
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 307 NSRTNGVAEDAATNGFFKSKSDYVKQPIPENAFEGIYDNFY--EEDGETAFMLLVPYGGK 364
++R G+A D G K K+ Y ++ + +Y + D + L+ YGGK
Sbjct: 351 STRWPGIAGDGDMTGRAKIKAAYARRSFDDRQIGTLYTRLTSTDYDNPAGVVALIAYGGK 410
Query: 365 MSEISESETPYPHRAGNIYQILYTVTWGEDETSQSHIDWIRRLYSHM------TPYVSEN 418
++ + T R +I +I+Y TW + H+ WIR LY + P
Sbjct: 411 VNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPVHVRWIRELYRDVYADTGGVPVPGGA 469
Query: 419 PREAYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQS- 477
AY+NY D+D+ + + W Y+K+ + RL VK DP + F++ S
Sbjct: 470 ADGAYVNYPDVDLADEEWNTSGVP----WSELYYKDAYPRLQAVKARWDPRNVFRHALSV 525
Query: 478 -IPP 480
+PP
Sbjct: 526 RVPP 529
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 75 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFV 134
+NLRF P+ I ++++ + + + G ++ VRSGGH +E S V V
Sbjct: 51 ENLRF----VGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RV 105
Query: 135 VIDLLNLSEISVDAAEQTAWVQAGATLGQLY 165
V+D+ LS + D V+AGATLG +Y
Sbjct: 106 VMDMSRLSAVGFDEERGAFAVEAGATLGAVY 136
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 32/176 (18%)
Query: 86 KPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEIS 145
+P +I L V +++ + +GL+I VRSGGH+ G Y ++ +V+DL ++ I
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 146 VDAAEQTAWVQAGATLGQLYYRIAE---------------------KRYGAMLRKYGLAA 184
+D A A + G G L A+ G + KYGLA+
Sbjct: 96 IDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLAS 155
Query: 185 DNIVDARLTDANGRLL----DRKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVP 236
DNI+ A L A G ++ D + +LFWA++G G +FGV+ +V+L +P
Sbjct: 156 DNILGATLVTATGDVIYCSDDERP---ELFWAVRGA--GPNFGVVTEVEVQLYELP 206
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 97/480 (20%), Positives = 181/480 (37%), Gaps = 116/480 (24%)
Query: 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISV 146
P I P + AA++C G+QI + GGH + + ++++L + +SV
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 147 DAAEQTAWVQAGATLGQLYYRIAEKRYGAM----------------------LRKYGLAA 184
D A +Q GA LG + ++ A+ +GL
Sbjct: 103 DD-NNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTL 161
Query: 185 DNIVDARLTDANGRLLD-RKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFR 243
D ++ A + A+ ++ ++ DLFWA++GGG G F ++ ++ P +T ++
Sbjct: 162 DWLIGATVVLADASIVHVSETENADLFWALRGGGGG--FAIVSEFEFNTFEAPEIITTYQ 219
Query: 244 ----------------------------VSRSLEQNATKIVHKWQ-------------LL 262
+S LE NA + W+ L
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANAL--NWEGNFFGNAKDLKKILQ 277
Query: 263 PLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLD--------RNSRTNGVA 314
P+M+++ + ++K +E W + + G L++ + NS T
Sbjct: 278 PIMKKAGGKSTISK--LVETDWYGQ---INTYLYGADLNITYNYDVHEYFYANSLTAPRL 332
Query: 315 EDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGK---MSEISES 371
D A F K +DN G ++ +GGK ++ +S
Sbjct: 333 SDEAIQAFVDYK----------------FDNSSVRPGRGWWIQWDFHGGKNSALAAVSND 376
Query: 372 ETPYPHRAGN-IYQILYTVTWGEDETS---QSHIDWIRRLYSHMTPYVSENPREAYINYR 427
ET Y HR ++Q ++ E+ TS +S ++++ + + + E+ + Y NY
Sbjct: 377 ETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYA 436
Query: 428 DLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPLTSWRKK 487
D T K+ + Y++ N ++L +K DP D F N S+ P+ +K
Sbjct: 437 DT---------TLTKEEA--QKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQK 485
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 97/480 (20%), Positives = 181/480 (37%), Gaps = 116/480 (24%)
Query: 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISV 146
P I P + AA++C G+QI + GGH + + ++++L + +SV
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 147 DAAEQTAWVQAGATLGQLYYRIAEKRYGAM----------------------LRKYGLAA 184
D A +Q GA LG + ++ A+ +GL
Sbjct: 103 DD-NNVATIQGGARLGYTALELLDQGNRALSHGTAPAVGVGGHVLGGGYGFATHTHGLTL 161
Query: 185 DNIVDARLTDANGRLLD-RKSMGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFR 243
D ++ A + A+ ++ ++ DLFWA++GGG G F ++ ++ P +T ++
Sbjct: 162 DWLIGATVVLADASIVHVSETENADLFWALRGGGGG--FAIVSEFEFNTFEAPEIITTYQ 219
Query: 244 ----------------------------VSRSLEQNATKIVHKWQ-------------LL 262
+S LE NA + W+ L
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANAL--NWEGNFFGNAKDLKKILQ 277
Query: 263 PLMQESFPELGLTKEDCIEMSWIESAHDLAGFNKGDPLDLLLD--------RNSRTNGVA 314
P+M+++ + ++K +E W + + G L++ + NS T
Sbjct: 278 PIMKKAGGKSTISK--LVETDWYGQ---INTYLYGADLNITYNYDVHEYFYANSLTAPRL 332
Query: 315 EDAATNGFFKSKSDYVKQPIPENAFEGIYDNFYEEDGETAFMLLVPYGGK---MSEISES 371
D A F K +DN G ++ +GGK ++ +S
Sbjct: 333 SDEAIQAFVDYK----------------FDNSSVRPGRGWWIQWDFHGGKNSALAAVSND 376
Query: 372 ETPYPHRAGN-IYQILYTVTWGEDETS---QSHIDWIRRLYSHMTPYVSENPREAYINYR 427
ET Y HR ++Q ++ E+ TS +S ++++ + + + E+ + Y NY
Sbjct: 377 ETAYAHRDQLWLWQFYDSIYDYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYA 436
Query: 428 DLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIPPLTSWRKK 487
D T K+ + Y++ N ++L +K DP D F N S+ P+ +K
Sbjct: 437 DT---------TLTKEEA--QKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQK 485
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 12/161 (7%)
Query: 325 SKSDYVKQPIPENAFEGIYDNFY-EEDGETAFMLLVPYGGKMSEISESETPYPHRAGNIY 383
SKS Y + + ++ + + + G+ ++++ YGG+++ S+ P R +
Sbjct: 344 SKSAYHRAAPTDEQLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRDSVVK 403
Query: 384 QILYTVTWGEDETSQSHIDWIRRLYSHM------TPYVSENPREAYINYRDLDIGTNNRG 437
++ W + E + H+ W+R LY P YINY D D+ R
Sbjct: 404 SSWFS-AWQDAELDELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARN 462
Query: 438 HTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSI 478
+ W Y+K+N+ RL K DP + F + SI
Sbjct: 463 ----RSGEPWHHLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 58/220 (26%)
Query: 86 KPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGH---DFEGLSYVSHVPFVVIDLLNLS 142
+P+ P V A+++ + G + RSGGH DF G +V+DL NL
Sbjct: 34 EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRD----LVLDLHNLH 89
Query: 143 EISVDAAEQTAWVQAGATLGQLYYRIAEKRYGAML-----------------------RK 179
I A V +GAT+ Q+ + +R+ A L R+
Sbjct: 90 AIGPAADGAGVRVGSGATVDQVQKALF-RRWNAALPLGACSAVGMGGLVAGGGYGPLSRQ 148
Query: 180 YGLAADNI--VDARLTD-------ANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVPWKV 230
GL D++ V+ + D R D +GE LFWA GG G +FGV+ ++
Sbjct: 149 LGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWA-HTGGGGGNFGVVTAYEF 206
Query: 231 RL--------VIVPSTVTRFRVSRSLEQNATKIVHKWQLL 262
R V +P R V K+V W ++
Sbjct: 207 RSPEHLATEPVGLPRAAGRLHVQ--------KVVFPWAMI 238
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPF----VVIDLLNLS 142
P +T V QVQ +K +H + I S G +F Y S P V++DL ++
Sbjct: 57 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDLKKMN 113
Query: 143 EI-SVDAAEQTAWVQAGATLGQLYYRIAEKRYGAML 177
+I +D A V+ G T GQ+Y I E ML
Sbjct: 114 KIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVML 149
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPF----VVIDLLNLS 142
P +T V QVQ +K +H + I S G +F Y S P V++DL ++
Sbjct: 58 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF---GYGSAAPVQRGQVILDLKKMN 114
Query: 143 EI-SVDAAEQTAWVQAGATLGQLYYRIAEKRYGAML 177
+I +D A V+ G T GQ+Y I E ML
Sbjct: 115 KIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVML 150
>pdb|1SMN|A Chain A, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1SMN|B Chain B, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1QAE|A Chain A, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1QAE|B Chain B, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1G8T|A Chain A, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
pdb|1G8T|B Chain B, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
Length = 245
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 38 LESL----IQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPK------- 86
LES+ + C + S N SI + YT N+S + N+ ++ TP + K
Sbjct: 3 LESIDNCAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTD 62
Query: 87 ----PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHV 131
P + P D + AA+K + H + +G D+E L+Y+S++
Sbjct: 63 PALNPADTLAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNI 111
>pdb|1QL0|A Chain A, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
pdb|1QL0|B Chain B, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
Length = 241
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 42 IQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPK-----------PQVI 90
+ C + S SI + YT N+S + N+ ++ TP + K P
Sbjct: 7 VGCPTGGSSKVSIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADT 66
Query: 91 ITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHV 131
+ P D + AA+K + H + +G D+E L+Y+S++
Sbjct: 67 LAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNI 107
>pdb|3OK8|A Chain A, I-Bar Of Pinkbar
pdb|3OK8|B Chain B, I-Bar Of Pinkbar
Length = 222
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 372 ETPYPHRAGNIYQI---LYTVTWGEDETSQSHIDWIRRLYSHMTPYVSENPREA 422
E Y HRA N+ + L+ + D+ ++ + + RL++ M +VSE+ R A
Sbjct: 125 EIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAA 178
>pdb|2WP4|A Chain A, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
pdb|2WP4|B Chain B, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
Length = 147
Score = 31.6 bits (70), Expect = 1.00, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 93 PLDVSQVQAAIKCSKKHGL-----QIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVD 147
PL V +V AA+ ++ G+ +R + GHD L Y ++ P V+ L+++ D
Sbjct: 19 PLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCED 78
Query: 148 AAE 150
AE
Sbjct: 79 KAE 81
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 387 YTVTWGEDETSQSHIDWIRRLYSHMTPY---VSENPREAYIN---------YRDLDIGTN 434
Y WG + + I++I P+ VS NP Y+DLD+
Sbjct: 195 YVNQWGPEYEASKAIEYINGQKDQKQPFALVVSXNPPHTGYELVPDRYKEIYKDLDVEAL 254
Query: 435 NRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVD 467
+G I YF+NN + T VD
Sbjct: 255 CKGRPDIPAKGTEXGDYFRNNIRNYYACITGVD 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,115,985
Number of Sequences: 62578
Number of extensions: 644024
Number of successful extensions: 1591
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1461
Number of HSP's gapped (non-prelim): 47
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)