Query 041546
Match_columns 490
No_of_seqs 342 out of 2445
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:15:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 1.2E-33 2.7E-38 299.3 36.5 170 78-251 56-257 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 6.9E-29 1.5E-33 260.8 26.5 155 79-239 7-185 (438)
3 TIGR01677 pln_FAD_oxido plant- 100.0 1.2E-27 2.6E-32 256.6 29.2 162 79-242 24-218 (557)
4 TIGR01679 bact_FAD_ox FAD-link 100.0 1.1E-27 2.4E-32 251.2 25.7 152 79-239 4-179 (419)
5 PLN02805 D-lactate dehydrogena 100.0 6.1E-28 1.3E-32 259.4 21.5 171 85-258 132-330 (555)
6 KOG1231 Proteins containing th 100.0 4E-27 8.7E-32 236.5 22.7 156 79-237 56-240 (505)
7 PRK11230 glycolate oxidase sub 100.0 3.6E-27 7.9E-32 251.8 21.8 172 84-258 53-253 (499)
8 COG0277 GlcD FAD/FMN-containin 100.0 7.4E-27 1.6E-31 248.3 22.6 160 84-247 29-218 (459)
9 TIGR01676 GLDHase galactonolac 99.9 1.5E-26 3.2E-31 245.2 20.9 155 78-238 53-231 (541)
10 TIGR00387 glcD glycolate oxida 99.9 7.8E-26 1.7E-30 237.3 18.5 168 90-260 1-198 (413)
11 PRK11282 glcE glycolate oxidas 99.9 1.3E-24 2.8E-29 221.3 18.3 159 95-260 3-193 (352)
12 PLN02465 L-galactono-1,4-lacto 99.9 1.5E-23 3.1E-28 224.2 21.7 155 78-238 88-266 (573)
13 PRK13905 murB UDP-N-acetylenol 99.9 8.6E-23 1.9E-27 205.0 13.6 147 84-236 28-193 (298)
14 PF01565 FAD_binding_4: FAD bi 99.9 6.2E-22 1.3E-26 176.7 14.0 113 87-201 1-137 (139)
15 PRK12436 UDP-N-acetylenolpyruv 99.9 6.4E-21 1.4E-25 191.5 14.1 146 84-235 34-197 (305)
16 PRK11183 D-lactate dehydrogena 99.8 8.3E-20 1.8E-24 191.4 17.1 169 84-257 36-287 (564)
17 TIGR00179 murB UDP-N-acetyleno 99.8 4.3E-20 9.3E-25 183.9 14.4 146 84-234 10-174 (284)
18 PRK13906 murB UDP-N-acetylenol 99.8 5.4E-20 1.2E-24 184.8 13.9 144 85-234 35-196 (307)
19 KOG4730 D-arabinono-1, 4-lacto 99.8 2.1E-19 4.5E-24 181.2 18.0 162 79-245 42-227 (518)
20 PRK13903 murB UDP-N-acetylenol 99.8 7.7E-20 1.7E-24 186.6 14.6 147 84-235 30-196 (363)
21 PRK14652 UDP-N-acetylenolpyruv 99.8 9.5E-20 2E-24 182.7 14.8 145 84-236 33-196 (302)
22 KOG1232 Proteins containing th 99.8 1.6E-18 3.4E-23 170.9 15.0 164 75-241 78-271 (511)
23 PRK14649 UDP-N-acetylenolpyruv 99.8 4.9E-18 1.1E-22 169.9 13.8 148 84-235 18-192 (295)
24 PRK14653 UDP-N-acetylenolpyruv 99.7 7.2E-17 1.6E-21 161.0 14.1 143 85-235 32-193 (297)
25 KOG1233 Alkyl-dihydroxyacetone 99.7 1.4E-16 3E-21 157.5 14.1 166 81-248 155-352 (613)
26 COG0812 MurB UDP-N-acetylmuram 99.7 2.3E-16 5.1E-21 154.7 14.3 149 83-235 17-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 4.4E-16 9.6E-21 155.0 13.4 146 85-236 31-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 8.3E-16 1.8E-20 155.2 13.1 145 85-235 19-188 (334)
29 PF08031 BBE: Berberine and be 99.6 6.3E-17 1.4E-21 116.5 3.1 47 422-479 1-47 (47)
30 PRK14648 UDP-N-acetylenolpyruv 99.6 6.6E-15 1.4E-19 148.6 13.6 149 85-235 28-236 (354)
31 PRK14651 UDP-N-acetylenolpyruv 99.4 8E-13 1.7E-17 130.0 11.6 132 86-235 20-170 (273)
32 KOG1262 FAD-binding protein DI 99.2 8E-12 1.7E-16 124.3 5.7 145 94-240 61-233 (543)
33 PRK13904 murB UDP-N-acetylenol 99.1 2.1E-10 4.5E-15 111.9 10.0 125 86-236 18-160 (257)
34 PF00941 FAD_binding_5: FAD bi 95.7 0.015 3.2E-07 53.8 4.8 75 87-167 2-80 (171)
35 TIGR02963 xanthine_xdhA xanthi 95.4 0.14 3E-06 55.0 11.5 79 87-171 192-274 (467)
36 PLN00107 FAD-dependent oxidore 95.0 0.066 1.4E-06 52.2 6.9 22 454-475 176-197 (257)
37 PRK09799 putative oxidoreducta 94.9 0.084 1.8E-06 52.2 7.6 73 89-167 4-78 (258)
38 TIGR03312 Se_sel_red_FAD proba 93.4 0.25 5.4E-06 48.8 7.4 71 90-166 4-76 (257)
39 PF09265 Cytokin-bind: Cytokin 93.2 0.17 3.7E-06 50.3 5.9 33 445-478 248-280 (281)
40 TIGR03195 4hydrxCoA_B 4-hydrox 91.1 0.42 9.2E-06 48.7 5.9 73 88-166 5-81 (321)
41 PRK09971 xanthine dehydrogenas 90.9 0.36 7.8E-06 48.6 5.2 73 89-166 6-82 (291)
42 COG4630 XdhA Xanthine dehydrog 90.8 0.66 1.4E-05 47.4 6.8 163 87-259 203-396 (493)
43 PLN02906 xanthine dehydrogenas 90.1 1.3 2.8E-05 53.6 9.7 77 88-168 229-307 (1319)
44 TIGR03199 pucC xanthine dehydr 88.4 0.57 1.2E-05 46.4 4.3 70 93-166 1-73 (264)
45 PF04030 ALO: D-arabinono-1,4- 87.4 0.49 1.1E-05 46.5 3.2 22 454-475 233-254 (259)
46 TIGR02969 mam_aldehyde_ox alde 87.4 4.2 9.1E-05 49.4 11.5 78 88-169 237-316 (1330)
47 PLN00192 aldehyde oxidase 84.3 2.3 5.1E-05 51.6 7.4 82 87-169 233-315 (1344)
48 COG1319 CoxM Aerobic-type carb 78.5 6.2 0.00014 39.5 6.9 75 87-165 3-80 (284)
49 PF02913 FAD-oxidase_C: FAD li 75.5 3.2 6.9E-05 39.6 3.9 27 447-473 217-244 (248)
50 PF03614 Flag1_repress: Repres 66.9 16 0.00035 32.6 5.8 41 89-129 8-49 (165)
51 PF02601 Exonuc_VII_L: Exonucl 51.5 20 0.00044 36.3 4.5 57 57-120 19-87 (319)
52 COG4981 Enoyl reductase domain 47.7 57 0.0012 35.5 7.0 123 40-183 112-243 (717)
53 TIGR00387 glcD glycolate oxida 47.7 12 0.00026 39.6 2.1 28 447-474 383-411 (413)
54 PLN02805 D-lactate dehydrogena 44.6 32 0.00069 37.9 4.9 35 445-479 515-550 (555)
55 PF07172 GRP: Glycine rich pro 43.9 10 0.00022 31.5 0.7 22 1-22 1-22 (95)
56 PRK00286 xseA exodeoxyribonucl 41.0 29 0.00064 36.9 3.9 57 57-120 140-204 (438)
57 PRK11282 glcE glycolate oxidas 37.7 20 0.00044 37.0 2.0 22 453-474 323-345 (352)
58 COG0351 ThiD Hydroxymethylpyri 36.2 1.3E+02 0.0028 29.9 7.1 90 56-172 133-225 (263)
59 cd06397 PB1_UP1 Uncharacterize 35.1 1.8E+02 0.0039 23.4 6.4 73 145-229 6-78 (82)
60 PRK11230 glycolate oxidase sub 33.3 28 0.0006 37.9 2.2 33 447-479 440-473 (499)
61 COG4359 Uncharacterized conser 31.6 50 0.0011 31.0 3.2 27 99-125 78-104 (220)
62 COG1570 XseA Exonuclease VII, 29.0 58 0.0013 34.6 3.6 57 57-120 140-205 (440)
63 TIGR01676 GLDHase galactonolac 25.8 41 0.0009 36.8 2.0 20 456-475 515-534 (541)
64 KOG3282 Uncharacterized conser 25.3 88 0.0019 29.1 3.7 36 78-115 118-153 (190)
65 PLN02465 L-galactono-1,4-lacto 24.3 43 0.00093 37.0 1.8 20 456-475 545-564 (573)
66 cd07033 TPP_PYR_DXS_TK_like Py 24.1 1.1E+02 0.0024 27.4 4.2 30 88-117 125-154 (156)
67 TIGR00237 xseA exodeoxyribonuc 23.1 54 0.0012 34.9 2.2 57 57-120 134-199 (432)
68 PF15608 PELOTA_1: PELOTA RNA 22.7 1E+02 0.0023 25.8 3.3 34 86-119 55-89 (100)
69 COG1058 CinA Predicted nucleot 20.8 1.4E+02 0.003 29.5 4.3 58 54-121 14-71 (255)
70 smart00666 PB1 PB1 domain. Pho 20.5 2.9E+02 0.0063 21.3 5.5 63 145-217 7-69 (81)
71 PF02779 Transket_pyr: Transke 20.4 1.5E+02 0.0032 27.1 4.3 31 88-118 139-171 (178)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.2e-33 Score=299.30 Aligned_cols=170 Identities=21% Similarity=0.318 Sum_probs=152.3
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHH--hcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCc-------EEEeC
Q 041546 78 RFSTPNTPKPQVIITPLDVSQVQAAIKCSK--KHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSE-------ISVDA 148 (490)
Q Consensus 78 r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~--~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~-------i~vd~ 148 (490)
.|.......|.+|++|++++||+++|++|+ +++++|.+||+||++.|.+...+ |++|||++|++ +++|.
T Consensus 56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd~ 133 (525)
T PLN02441 56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVSG 133 (525)
T ss_pred CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEcC
Confidence 477666779999999999999999999997 67999999999999998887755 99999999999 36788
Q ss_pred CCCEEEEcCCCChHHHHHHHHhhc----------------------cCCccccccccccceeeeEEEccCCceee-ccCc
Q 041546 149 AEQTAWVQAGATLGQLYYRIAEKR----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD-RKSM 205 (490)
Q Consensus 149 ~~~~v~v~aG~~~~~l~~~l~~~g----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~ 205 (490)
+..+|+|++|++|.++++++.++| +|..+.+||..+|+|++++||+++|++++ +..+
T Consensus 134 ~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~ 213 (525)
T PLN02441 134 DGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQ 213 (525)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCC
Confidence 889999999999999999999998 45567899999999999999999999998 6778
Q ss_pred chhhhhhhccccCCCceEEEEEEEEEEEecCCeEEEEEEeechhhH
Q 041546 206 GEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQN 251 (490)
Q Consensus 206 ~~dLf~a~rG~~~~g~fGIIt~~~lkl~p~p~~~~~~~~~~~~~~~ 251 (490)
|+|||||+|||+ |+|||||+++||++|.|+.+..+.+.+..-+.
T Consensus 214 n~DLF~Av~Ggl--G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~ 257 (525)
T PLN02441 214 NSDLFFAVLGGL--GQFGIITRARIALEPAPKRVRWIRVLYSDFST 257 (525)
T ss_pred ChhHHHhhccCC--CCcEEEEEEEEEEEecCCceEEEEEEcCCHHH
Confidence 999999999999 99999999999999999987777776654333
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.97 E-value=6.9e-29 Score=260.84 Aligned_cols=155 Identities=22% Similarity=0.356 Sum_probs=140.9
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcC
Q 041546 79 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQA 157 (490)
Q Consensus 79 ~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~a 157 (490)
|+......|.+|+.|++++||+++|++|++++++++++|+||++.+.... + +++|||++|++| ++|.++++|+|+|
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~--gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D--GFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C--eEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 66667789999999999999999999999999999999999998776543 3 899999999997 8999999999999
Q ss_pred CCChHHHHHHHHhhc----------------------cCCccccccccccceeeeEEEccCCceee-ccCcchhhhhhhc
Q 041546 158 GATLGQLYYRIAEKR----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD-RKSMGEDLFWAIQ 214 (490)
Q Consensus 158 G~~~~~l~~~l~~~g----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dLf~a~r 214 (490)
|+++.+|.+.|.++| +|. +.+||..+|+|+++++|+++|++++ +..+++||||+.+
T Consensus 84 G~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~a~~ 162 (438)
T TIGR01678 84 GIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQAAR 162 (438)
T ss_pred CCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHHHHh
Confidence 999999999999999 564 5788999999999999999999997 5667899999999
Q ss_pred cccCCCceEEEEEEEEEEEecCCeE
Q 041546 215 GGGIGASFGVIVPWKVRLVIVPSTV 239 (490)
Q Consensus 215 G~~~~g~fGIIt~~~lkl~p~p~~~ 239 (490)
|++ |+|||||++|||++|.....
T Consensus 163 ~~~--G~lGIIt~vtl~l~p~~~l~ 185 (438)
T TIGR01678 163 VSL--GCLGIIVTVTIQVVPQFHLQ 185 (438)
T ss_pred cCC--CceEeeEEEEEEEEeccceE
Confidence 999 99999999999999986543
No 3
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.96 E-value=1.2e-27 Score=256.64 Aligned_cols=162 Identities=19% Similarity=0.213 Sum_probs=141.4
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEc-CCCCCCCCccccC-CCEEEEEcCCCCc-EEEeCCCCEEEE
Q 041546 79 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRS-GGHDFEGLSYVSH-VPFVVIDLLNLSE-ISVDAAEQTAWV 155 (490)
Q Consensus 79 ~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~g-gGh~~~g~~~~~~-~~gvvIdl~~l~~-i~vd~~~~~v~v 155 (490)
|+...+.+|.+|++|++++||+++|++|+++++||+++| +||++.+...... +++++|||++|++ +++|.++++|+|
T Consensus 24 Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV 103 (557)
T TIGR01677 24 FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTV 103 (557)
T ss_pred cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEE
Confidence 888888999999999999999999999999999999996 6999876554331 1379999999999 699999999999
Q ss_pred cCCCChHHHHHHHHhhc----------------------cCCcc-ccccccccceeeeEEEccCC------ceee-ccCc
Q 041546 156 QAGATLGQLYYRIAEKR----------------------YGAML-RKYGLAADNIVDARLTDANG------RLLD-RKSM 205 (490)
Q Consensus 156 ~aG~~~~~l~~~l~~~g----------------------~G~~~-~~~G~~~D~v~~~~vV~~~G------~i~~-~~~~ 205 (490)
|||+++.+|.+.|.++| +|... +.||..+|+|++++||+++| ++++ +..+
T Consensus 104 ~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~ 183 (557)
T TIGR01677 104 ESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGD 183 (557)
T ss_pred CCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCC
Confidence 99999999999999999 44333 47788999999999999998 7776 6667
Q ss_pred chhhhhhhccccCCCceEEEEEEEEEEEecCCeEEEE
Q 041546 206 GEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRF 242 (490)
Q Consensus 206 ~~dLf~a~rG~~~~g~fGIIt~~~lkl~p~p~~~~~~ 242 (490)
++|||||+|||+ |+|||||++|||++|.+.....+
T Consensus 184 ~~dLf~a~rgsl--G~lGVVtevTL~~~P~~~~~~~~ 218 (557)
T TIGR01677 184 TPNEFNAAKVSL--GVLGVISQVTLALQPMFKRSVTY 218 (557)
T ss_pred CHHHHHhhccCC--CccEeeeEEEEEEEccccceEEE
Confidence 899999999999 99999999999999987744443
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.96 E-value=1.1e-27 Score=251.19 Aligned_cols=152 Identities=26% Similarity=0.394 Sum_probs=136.1
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcC
Q 041546 79 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQA 157 (490)
Q Consensus 79 ~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~a 157 (490)
|+......|.+|++|++++||+++|++|++ +++++|+||++.+... .+ +++|||++|++| ++|.++++|+|||
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~-~~--g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC-TD--GTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc-CC--CEEEEhhHcCCceeecCCCCEEEEcC
Confidence 777667899999999999999999999974 7999999999977654 33 799999999997 8999999999999
Q ss_pred CCChHHHHHHHHhhc----------------------cCCccccccccccceeeeEEEccCCceee-ccCcchhhhhhhc
Q 041546 158 GATLGQLYYRIAEKR----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD-RKSMGEDLFWAIQ 214 (490)
Q Consensus 158 G~~~~~l~~~l~~~g----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dLf~a~r 214 (490)
|+++.+|.+.|.++| +|. +..||..+|+|++++||++||++++ ++.+++|||||+|
T Consensus 78 G~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a~~ 156 (419)
T TIGR01679 78 GTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLAAR 156 (419)
T ss_pred CCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHHHH
Confidence 999999999999999 444 3468889999999999999999998 6667899999999
Q ss_pred cccCCCceEEEEEEEEEEEecCCeE
Q 041546 215 GGGIGASFGVIVPWKVRLVIVPSTV 239 (490)
Q Consensus 215 G~~~~g~fGIIt~~~lkl~p~p~~~ 239 (490)
||+ |+|||||++|||++|+++..
T Consensus 157 g~~--G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 157 VSL--GALGVISQVTLQTVALFRLR 179 (419)
T ss_pred hCC--CceEEEEEEEEEeecceEeE
Confidence 999 99999999999999987543
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.96 E-value=6.1e-28 Score=259.36 Aligned_cols=171 Identities=20% Similarity=0.320 Sum_probs=151.6
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChHH
Q 041546 85 PKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLGQ 163 (490)
Q Consensus 85 ~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~ 163 (490)
..|.+||+|++++||+++|++|+++++|+++|||||++.|.+...+ ++++|||++||+| ++|.++.+|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4799999999999999999999999999999999999998876543 5999999999997 6999999999999999999
Q ss_pred HHHHHHhhc---------------------cCCccccccccccceeeeEEEccCCceeec--c----Ccchhhhhhhccc
Q 041546 164 LYYRIAEKR---------------------YGAMLRKYGLAADNIVDARLTDANGRLLDR--K----SMGEDLFWAIQGG 216 (490)
Q Consensus 164 l~~~l~~~g---------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~~--~----~~~~dLf~a~rG~ 216 (490)
|+++|.++| +|..+.+||.++|+|++++||++||++++. . ..++||+|+++||
T Consensus 211 L~~~L~~~Gl~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~Gs 290 (555)
T PLN02805 211 LNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGS 290 (555)
T ss_pred HHHHHHHcCCEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccC
Confidence 999999999 566788999999999999999999999962 1 2468999999999
Q ss_pred cCCCceEEEEEEEEEEEecCCeEEEEEEeechhhHHHHHHHH
Q 041546 217 GIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHK 258 (490)
Q Consensus 217 ~~~g~fGIIt~~~lkl~p~p~~~~~~~~~~~~~~~~~~~~~~ 258 (490)
+ |+|||||+++|||+|.|+......+.|...+++.+++..
T Consensus 291 e--GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 291 E--GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred C--CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 9 999999999999999999877777777654555555544
No 6
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.95 E-value=4e-27 Score=236.47 Aligned_cols=156 Identities=22% Similarity=0.384 Sum_probs=138.2
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhc--CCcEEEEcCCCCCCCCccccCCCEEEEEcC---CCCcE-EEeCCCCE
Q 041546 79 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKH--GLQIRVRSGGHDFEGLSYVSHVPFVVIDLL---NLSEI-SVDAAEQT 152 (490)
Q Consensus 79 ~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~--~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~---~l~~i-~vd~~~~~ 152 (490)
|....+..|.+|+.|++++||+.++|.|+.. .+||.+||+||+..|++.... +|+||.|+ .++++ .+..++..
T Consensus 56 Fg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~y 134 (505)
T KOG1231|consen 56 FGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLY 134 (505)
T ss_pred ccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccce
Confidence 3333456899999999999999999999999 899999999999999998743 48777664 34554 35556689
Q ss_pred EEEcCCCChHHHHHHHHhhc----------------------cCCccccccccccceeeeEEEccCCceee-ccCcchhh
Q 041546 153 AWVQAGATLGQLYYRIAEKR----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD-RKSMGEDL 209 (490)
Q Consensus 153 v~v~aG~~~~~l~~~l~~~g----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL 209 (490)
|.|+||..|-+|.+++.++| +|..+.+||...+||++++||+++|++++ ++..|++|
T Consensus 135 vdV~~g~~Widll~~t~e~GL~p~swtDyl~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~l 214 (505)
T KOG1231|consen 135 VDVSAGTLWIDLLDYTLEYGLSPFSWTDYLPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNL 214 (505)
T ss_pred EEeeCChhHHHHHHHHHHcCCCccCcCCccceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCcee
Confidence 99999999999999999999 67778999999999999999999999997 77789999
Q ss_pred hhhhccccCCCceEEEEEEEEEEEecCC
Q 041546 210 FWAIQGGGIGASFGVIVPWKVRLVIVPS 237 (490)
Q Consensus 210 f~a~rG~~~~g~fGIIt~~~lkl~p~p~ 237 (490)
|+++-||. |.|||||+++++|+|+|.
T Consensus 215 f~~vlGgl--GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 215 FFLVLGGL--GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeeccC--cceeeEEEEEEEeccCCc
Confidence 99999999 999999999999999994
No 7
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.95 E-value=3.6e-27 Score=251.81 Aligned_cols=172 Identities=22% Similarity=0.296 Sum_probs=150.2
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChH
Q 041546 84 TPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLG 162 (490)
Q Consensus 84 ~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~ 162 (490)
...|.+||+|++++||+++|++|+++++|+.+||+||++.|.+.... ++++|||++||+| ++|+++++|+||||+++.
T Consensus 53 ~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~~ 131 (499)
T PRK11230 53 RTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRNL 131 (499)
T ss_pred CCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccHH
Confidence 45899999999999999999999999999999999999987766543 4899999999997 899999999999999999
Q ss_pred HHHHHHHhhc-----------------------cCCccccccccccceeeeEEEccCCceeecc-----Ccchhhhhhhc
Q 041546 163 QLYYRIAEKR-----------------------YGAMLRKYGLAADNIVDARLTDANGRLLDRK-----SMGEDLFWAIQ 214 (490)
Q Consensus 163 ~l~~~l~~~g-----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~~~-----~~~~dLf~a~r 214 (490)
+|.++|.++| .|+.+.+||.+.|+|++++||++||++++.. ..++||+|+++
T Consensus 132 ~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~ 211 (499)
T PRK11230 132 AISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFT 211 (499)
T ss_pred HHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhc
Confidence 9999999999 3555668999999999999999999999732 34789999999
Q ss_pred cccCCCceEEEEEEEEEEEecCCeEEEEEEeechhhHHHHHHHH
Q 041546 215 GGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHK 258 (490)
Q Consensus 215 G~~~~g~fGIIt~~~lkl~p~p~~~~~~~~~~~~~~~~~~~~~~ 258 (490)
||+ |+|||||+++||++|.|+....+.+.+...+.+.+++..
T Consensus 212 Gs~--GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 212 GSE--GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred cCC--CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHH
Confidence 999 999999999999999999877666666544445554443
No 8
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.95 E-value=7.4e-27 Score=248.29 Aligned_cols=160 Identities=28% Similarity=0.418 Sum_probs=144.9
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChH
Q 041546 84 TPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLG 162 (490)
Q Consensus 84 ~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~ 162 (490)
...|.+++.|++++||+++|++|+++++||++|||||++.|...... +|+|||++||+| ++|+++.+|+||||+++.
T Consensus 29 ~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~--gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~ 106 (459)
T COG0277 29 RGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG--GVVLDLSRLNRILEIDPEDGTATVQAGVTLE 106 (459)
T ss_pred cCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCC--cEEEEchhhcchhccCcCCCEEEEcCCccHH
Confidence 35788999999999999999999999999999999999998887663 899999999998 799999999999999999
Q ss_pred HHHHHHHhhc-----------------------cCCccccccccccceeeeEEEccCCceee--c----cCcchhhhhhh
Q 041546 163 QLYYRIAEKR-----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD--R----KSMGEDLFWAI 213 (490)
Q Consensus 163 ~l~~~l~~~g-----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~--~----~~~~~dLf~a~ 213 (490)
+|.++|.++| +|..+.+||.+.|+|+++++|++||++++ . +..+.||+.+.
T Consensus 107 ~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~ 186 (459)
T COG0277 107 DLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALF 186 (459)
T ss_pred HHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHhc
Confidence 9999999998 78889999999999999999999999996 2 24568999999
Q ss_pred ccccCCCceEEEEEEEEEEEecCCeEEEEEEeec
Q 041546 214 QGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRS 247 (490)
Q Consensus 214 rG~~~~g~fGIIt~~~lkl~p~p~~~~~~~~~~~ 247 (490)
.||. |+|||||+++||+.|.|+...+....+.
T Consensus 187 iGs~--GtlGiit~~tl~l~p~~~~~~~~~~~~~ 218 (459)
T COG0277 187 VGSE--GTLGIITEATLKLLPLPETKATAVAGFP 218 (459)
T ss_pred ccCC--ccceEEEEEEEEeccCCchheEEEEeCC
Confidence 9999 9999999999999999886555444443
No 9
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.95 E-value=1.5e-26 Score=245.22 Aligned_cols=155 Identities=18% Similarity=0.272 Sum_probs=142.5
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEc
Q 041546 78 RFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQ 156 (490)
Q Consensus 78 r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~ 156 (490)
.|+.+....|..+++|+|++||+++|+.|+++|++|+++|+|||+.+.+... +.+|||++|++| ++|.++++|+||
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 3888888899999999999999999999999999999999999998877654 457999999996 999999999999
Q ss_pred CCCChHHHHHHHHhhc----------------------cCCccccccccccceeeeEEEccCCceee-ccCcchhhhhhh
Q 041546 157 AGATLGQLYYRIAEKR----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD-RKSMGEDLFWAI 213 (490)
Q Consensus 157 aG~~~~~l~~~l~~~g----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dLf~a~ 213 (490)
||+++.+|.+.|.++| +|.+ ..||..+|+|++++||+++|++++ +..+++|||||.
T Consensus 130 AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~Aa 208 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFFLA 208 (541)
T ss_pred CCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHHHH
Confidence 9999999999999999 5664 468999999999999999999997 666789999999
Q ss_pred ccccCCCceEEEEEEEEEEEecCCe
Q 041546 214 QGGGIGASFGVIVPWKVRLVIVPST 238 (490)
Q Consensus 214 rG~~~~g~fGIIt~~~lkl~p~p~~ 238 (490)
|||+ |+|||||++|||++|.+..
T Consensus 209 rgsl--G~LGVItevTLr~~Pa~~l 231 (541)
T TIGR01676 209 RCGL--GGLGVVAEVTLQCVERQEL 231 (541)
T ss_pred hcCC--CceEeEEEEEEEEEeccce
Confidence 9999 9999999999999999874
No 10
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.94 E-value=7.8e-26 Score=237.30 Aligned_cols=168 Identities=21% Similarity=0.281 Sum_probs=145.7
Q ss_pred EEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChHHHHHHH
Q 041546 90 IITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLGQLYYRI 168 (490)
Q Consensus 90 vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l 168 (490)
||+|+|++||+++|++|+++++|+.++|||||+.|...+.+ ++++|||++||+| ++|+++.+|+||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987766553 5899999999997 999999999999999999999999
Q ss_pred Hhhc-----------------------cCCccccccccccceeeeEEEccCCceeec------cCcchhhhhhhccccCC
Q 041546 169 AEKR-----------------------YGAMLRKYGLAADNIVDARLTDANGRLLDR------KSMGEDLFWAIQGGGIG 219 (490)
Q Consensus 169 ~~~g-----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~~------~~~~~dLf~a~rG~~~~ 219 (490)
.++| .|..+.+||.+.|+|++++||++||++++. ...++||++.+.|++
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~-- 157 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE-- 157 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC--
Confidence 9999 344566999999999999999999999962 235689999999999
Q ss_pred CceEEEEEEEEEEEecCCeEEEEEEeechhhHHHHHHHHHh
Q 041546 220 ASFGVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQ 260 (490)
Q Consensus 220 g~fGIIt~~~lkl~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 260 (490)
|+|||||+++|||+|.|+....+.+.+...+.+.+++....
T Consensus 158 GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 158 GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999976666666655555555554443
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.92 E-value=1.3e-24 Score=221.28 Aligned_cols=159 Identities=22% Similarity=0.322 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEcCCCC-CCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChHHHHHHHHhhc
Q 041546 95 DVSQVQAAIKCSKKHGLQIRVRSGGHD-FEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLGQLYYRIAEKR 172 (490)
Q Consensus 95 s~~dV~~~v~~a~~~~~~v~v~ggGh~-~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~~~g 172 (490)
.++||+++|++|+++++|++++||||+ +.+.. .. +++|||++||+| ++|+++.+|+|+||+++.+|.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~--~~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA--LA--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC--CC--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 479999999999999999999999974 55552 23 679999999997 8999999999999999999999999998
Q ss_pred ------------------------cCCccccccccccceeeeEEEccCCceeec------cCcchhhhhhhccccCCCce
Q 041546 173 ------------------------YGAMLRKYGLAADNIVDARLTDANGRLLDR------KSMGEDLFWAIQGGGIGASF 222 (490)
Q Consensus 173 ------------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~~------~~~~~dLf~a~rG~~~~g~f 222 (490)
+|..+.+||..+|+|+++++|+++|++++. ...++||||+++||. |+|
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~--GtL 156 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL--GTL 156 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC--chh
Confidence 666778899999999999999999999972 235789999999999 999
Q ss_pred EEEEEEEEEEEecCCeEEEEEEeechhhHHHHHHHHHh
Q 041546 223 GVIVPWKVRLVIVPSTVTRFRVSRSLEQNATKIVHKWQ 260 (490)
Q Consensus 223 GIIt~~~lkl~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 260 (490)
||||+++||++|.|+....+.+.++ ...+.+.+.+|.
T Consensus 157 GVitevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 157 GVLLEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred hhheEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 9999999999999987655555443 334455565654
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.91 E-value=1.5e-23 Score=224.18 Aligned_cols=155 Identities=18% Similarity=0.271 Sum_probs=138.8
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEc
Q 041546 78 RFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQ 156 (490)
Q Consensus 78 r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~ 156 (490)
+|+......|.+++.|+|++||+++|+.|+++|++|+++|+||++.+..... +.+|||++|++| ++|.++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 4888888999999999999999999999999999999999999988776554 346899999996 899999999999
Q ss_pred CCCChHHHHHHHHhhc----------------------cCCccccccccccceeeeEEEccCCceee-ccCcchhhhhhh
Q 041546 157 AGATLGQLYYRIAEKR----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD-RKSMGEDLFWAI 213 (490)
Q Consensus 157 aG~~~~~l~~~l~~~g----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dLf~a~ 213 (490)
||+++.+|.+.|.++| +|.. ..+|..+|+|+++++|+++|++++ +..+++||||+.
T Consensus 165 AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~aa 243 (573)
T PLN02465 165 AGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFRLA 243 (573)
T ss_pred cCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCCCCHHHHhHh
Confidence 9999999999999999 3333 346678899999999999999887 566779999999
Q ss_pred ccccCCCceEEEEEEEEEEEecCCe
Q 041546 214 QGGGIGASFGVIVPWKVRLVIVPST 238 (490)
Q Consensus 214 rG~~~~g~fGIIt~~~lkl~p~p~~ 238 (490)
|++. |.+||||+++||++|.++.
T Consensus 244 r~gl--G~lGVIteVTLql~P~~~L 266 (573)
T PLN02465 244 RCGL--GGLGVVAEVTLQCVPAHRL 266 (573)
T ss_pred hccC--CCCcEEEEEEEEEEecCce
Confidence 9999 9999999999999999864
No 13
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.89 E-value=8.6e-23 Score=205.04 Aligned_cols=147 Identities=21% Similarity=0.198 Sum_probs=129.2
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCC-CCcEEEeCCCCEEEEcCCCChH
Q 041546 84 TPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLN-LSEISVDAAEQTAWVQAGATLG 162 (490)
Q Consensus 84 ~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~-l~~i~vd~~~~~v~v~aG~~~~ 162 (490)
...|.+++.|++++||++++++|+++++|+.++|||||+...+.+.+ +++|+|++ |+.|+++ +.+|+|+||++|.
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~~--~~~v~v~aG~~~~ 103 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEVE--GNRITAGAGAPLI 103 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEec--CCEEEEECCCcHH
Confidence 35789999999999999999999999999999999999887665555 89999998 9988554 6789999999999
Q ss_pred HHHHHHHhhc-----------------cCCcccccc-ccccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEE
Q 041546 163 QLYYRIAEKR-----------------YGAMLRKYG-LAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGV 224 (490)
Q Consensus 163 ~l~~~l~~~g-----------------~G~~~~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGI 224 (490)
+|.+++.++| ++++++.|| .++|+|+++++|+++|++++.. +.|++|+||++.+++.+||
T Consensus 104 ~L~~~l~~~Gl~gle~~~gipGTVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~~~~~~gI 181 (298)
T PRK13905 104 KLARFAAEAGLSGLEFAAGIPGTVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSALQEEGLI 181 (298)
T ss_pred HHHHHHHHcCCCcchhccCCCcchhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccccCCCCCEE
Confidence 9999999998 446678898 6899999999999999999854 3599999999984445899
Q ss_pred EEEEEEEEEecC
Q 041546 225 IVPWKVRLVIVP 236 (490)
Q Consensus 225 It~~~lkl~p~p 236 (490)
||+++||++|..
T Consensus 182 I~~~~l~l~~~~ 193 (298)
T PRK13905 182 VLSATFQLEPGD 193 (298)
T ss_pred EEEEEEEEcCCC
Confidence 999999999863
No 14
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.88 E-value=6.2e-22 Score=176.72 Aligned_cols=113 Identities=36% Similarity=0.612 Sum_probs=105.8
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCc-EEEeCCCCEEEEcCCCChHHHH
Q 041546 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSE-ISVDAAEQTAWVQAGATLGQLY 165 (490)
Q Consensus 87 P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~-i~vd~~~~~v~v~aG~~~~~l~ 165 (490)
|.+|++|++++||+++|++|+++++|++++|+||++.+.+... ++++|||++|++ +++|+++++++|+||+++.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 7899999999999999999999999999999999998776634 499999999999 6899999999999999999999
Q ss_pred HHHHhhc-----------------------cCCccccccccccceeeeEEEccCCceee
Q 041546 166 YRIAEKR-----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD 201 (490)
Q Consensus 166 ~~l~~~g-----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~ 201 (490)
++|.++| +|..++.||..+|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 9998888 67788999999999999999999999986
No 15
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=6.4e-21 Score=191.47 Aligned_cols=146 Identities=15% Similarity=0.172 Sum_probs=128.9
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcEEEeCCCCEEEEcCCCChHH
Q 041546 84 TPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQ 163 (490)
Q Consensus 84 ~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~ 163 (490)
...|.+++.|.+++||++++++|+++++|+.++|||||++..+.+.+ |++|+|++|+.|+++ +.+++|+||+.+.+
T Consensus 34 gg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~ 109 (305)
T PRK12436 34 GGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAIID 109 (305)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHHH
Confidence 45799999999999999999999999999999999999987666665 999999889998876 46899999999999
Q ss_pred HHHHHHhhc-----------------cCCccccccc-cccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEEE
Q 041546 164 LYYRIAEKR-----------------YGAMLRKYGL-AADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVI 225 (490)
Q Consensus 164 l~~~l~~~g-----------------~G~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGII 225 (490)
|.+++.++| ++++++.||. ..|.+.+++|++++|++++... .|+.|+||.+.|.....||
T Consensus 110 L~~~~~~~gl~Gle~~~giPGtVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~--~e~~f~YR~s~~~~~~~ii 187 (305)
T PRK12436 110 VSRIALDHNLTGLEFACGIPGSVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK--EAFEFGYRKSVFANNHYII 187 (305)
T ss_pred HHHHHHHcCCccchhhcCCccchhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEEH--HHhcCcCCCCcCCCCCEEE
Confidence 999999997 5577889995 5688889999999999998544 4999999999866667899
Q ss_pred EEEEEEEEec
Q 041546 226 VPWKVRLVIV 235 (490)
Q Consensus 226 t~~~lkl~p~ 235 (490)
++++|+|.+-
T Consensus 188 l~a~~~l~~~ 197 (305)
T PRK12436 188 LEARFELEEG 197 (305)
T ss_pred EEEEEEEcCC
Confidence 9999999764
No 16
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.83 E-value=8.3e-20 Score=191.36 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=141.9
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCC----CEEEEEcCCCCcE-EEeCCCCEEEEcCC
Q 041546 84 TPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHV----PFVVIDLLNLSEI-SVDAAEQTAWVQAG 158 (490)
Q Consensus 84 ~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~----~gvvIdl~~l~~i-~vd~~~~~v~v~aG 158 (490)
...|.+||+|.|++||+++|++|+++++||.+||||+++.|.+.+... ++|||||.+||+| +|| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 357999999999999999999999999999999999999998887532 3899999999997 688 5678999999
Q ss_pred CChHHHHHHHHhhc------------------------cCCccccccccccceeeeEEEccCCce-------eec-----
Q 041546 159 ATLGQLYYRIAEKR------------------------YGAMLRKYGLAADNIVDARLTDANGRL-------LDR----- 202 (490)
Q Consensus 159 ~~~~~l~~~l~~~g------------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i-------~~~----- 202 (490)
+++.+|.++|.++| .|....+||...++++. ++|+++|++ ++.
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999998 34445677778888888 999999999 331
Q ss_pred ------cCcch----------------------------------hhhhhh--ccccCCCceEEEEEEEEEEEecCCeEE
Q 041546 203 ------KSMGE----------------------------------DLFWAI--QGGGIGASFGVIVPWKVRLVIVPSTVT 240 (490)
Q Consensus 203 ------~~~~~----------------------------------dLf~a~--rG~~~~g~fGIIt~~~lkl~p~p~~~~ 240 (490)
+..+. |+...+ -|+. |.+||| +++|+++|.|+...
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse--GkLgV~-avrLdtfp~p~~~~ 270 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA--GKLAVF-AVRLDTFPAEKNTQ 270 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC--ceEEEE-EEEeccccCCCcce
Confidence 11233 777777 8899 999999 99999999999988
Q ss_pred EEEEeechhhHHHHHHH
Q 041546 241 RFRVSRSLEQNATKIVH 257 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~~ 257 (490)
+|.+.++..+.+.++..
T Consensus 271 vf~ig~n~~~~~~~~rr 287 (564)
T PRK11183 271 VFYIGTNDPAVLTEIRR 287 (564)
T ss_pred EEEEeCCCHHHHHHHHH
Confidence 88888776555555443
No 17
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.83 E-value=4.3e-20 Score=183.94 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=129.5
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcEEEeCCCCEEEEcCCCChHH
Q 041546 84 TPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQ 163 (490)
Q Consensus 84 ~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~ 163 (490)
...|.++++|++++||++++++|+++++|+.++|||||+++.+.+.+ ++||++++|+.+.++. +.+++|+||+.|.+
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~ 86 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWHK 86 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHHH
Confidence 45789999999999999999999999999999999999998886665 9999999998877665 57999999999999
Q ss_pred HHHHHHhhc-----------------cCCcccccccccc-ceeeeEEEccCCceeeccCcchhhhhhhccccCCCce-EE
Q 041546 164 LYYRIAEKR-----------------YGAMLRKYGLAAD-NIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASF-GV 224 (490)
Q Consensus 164 l~~~l~~~g-----------------~G~~~~~~G~~~D-~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~f-GI 224 (490)
|.+++.++| ++++++.||..++ +|+++++|+++|++++... .|+.|+||.+.|.... .|
T Consensus 87 l~~~~~~~Gl~GlE~l~giPGtvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~--~~~~f~YR~S~f~~~~~~i 164 (284)
T TIGR00179 87 LVKYALKNGLSGLEFLAGIPGTVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN--EQLGFGYRTSIFQHKYVGL 164 (284)
T ss_pred HHHHHHHCCCcccccCCCCCchHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH--HHccccCCccccCCCCcEE
Confidence 999999999 5788999999875 7899999999999988544 4999999999876554 79
Q ss_pred EEEEEEEEEe
Q 041546 225 IVPWKVRLVI 234 (490)
Q Consensus 225 It~~~lkl~p 234 (490)
|++++|++.+
T Consensus 165 il~a~~~l~~ 174 (284)
T TIGR00179 165 VLKAEFQLTL 174 (284)
T ss_pred EEEEEEEecc
Confidence 9999999843
No 18
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=5.4e-20 Score=184.82 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=128.3
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcEEEeCCCCEEEEcCCCChHHH
Q 041546 85 PKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQL 164 (490)
Q Consensus 85 ~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~l 164 (490)
..+.+++.|++++||++++++|+++++|+.++|||||.+..+.+.+ |+||++++|+.|+++ +.+++||||+.+.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVS--DDAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEe--CCEEEEECCCcHHHH
Confidence 4688999999999999999999999999999999999987776665 999999889999876 458999999999999
Q ss_pred HHHHHhhc-----------------cCCcccccc-ccccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEEEE
Q 041546 165 YYRIAEKR-----------------YGAMLRKYG-LAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIV 226 (490)
Q Consensus 165 ~~~l~~~g-----------------~G~~~~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGIIt 226 (490)
.+++.++| +.++++.|| .++|+|+++++|+++|++++... .|+.|+||.+.|...-.||+
T Consensus 111 ~~~~~~~Gl~GlE~~~gIPGtVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~~~~~~~ii~ 188 (307)
T PRK13906 111 SRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSIIQKEHLVVL 188 (307)
T ss_pred HHHHHHcCCccchhhcCCCccHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCcccCCCCCEEEE
Confidence 99999999 557788995 78999999999999999998544 49999999998655446999
Q ss_pred EEEEEEEe
Q 041546 227 PWKVRLVI 234 (490)
Q Consensus 227 ~~~lkl~p 234 (490)
+++|+|.|
T Consensus 189 ~~~~~l~~ 196 (307)
T PRK13906 189 EAAFTLAP 196 (307)
T ss_pred EEEEEECC
Confidence 99999986
No 19
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.83 E-value=2.1e-19 Score=181.20 Aligned_cols=162 Identities=23% Similarity=0.252 Sum_probs=133.8
Q ss_pred cCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcC
Q 041546 79 FSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQA 157 (490)
Q Consensus 79 ~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~a 157 (490)
|+....++.+-|-+|++++||.++|+.|+++|.++++.|.||+.....+.. |.+|++..||++ ++|++..+|+||+
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEecc
Confidence 444445677788999999999999999999999999999999998877755 699999999995 8999999999999
Q ss_pred CCChHHHHHHHHhhc--------------cC-Ccccccccc---ccceeeeEE----EccCCceee-ccCcchhhhhhhc
Q 041546 158 GATLGQLYYRIAEKR--------------YG-AMLRKYGLA---ADNIVDARL----TDANGRLLD-RKSMGEDLFWAIQ 214 (490)
Q Consensus 158 G~~~~~l~~~l~~~g--------------~G-~~~~~~G~~---~D~v~~~~v----V~~~G~i~~-~~~~~~dLf~a~r 214 (490)
|+++.||.+++.+.| .| +..+.||.. .|.|.++.+ +.++|.++. ++...||+|.|.+
T Consensus 119 GirlrQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAk 198 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAK 198 (518)
T ss_pred CcCHHHHHHHHHhcCccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhh
Confidence 999999999999999 11 234555553 355555544 457898776 6677899999999
Q ss_pred cccCCCceEEEEEEEEEEEecCCeEEEEEEe
Q 041546 215 GGGIGASFGVIVPWKVRLVIVPSTVTRFRVS 245 (490)
Q Consensus 215 G~~~~g~fGIIt~~~lkl~p~p~~~~~~~~~ 245 (490)
-|. |-+|||.++||+++|.-+.+..+.+.
T Consensus 199 vSL--G~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 199 VSL--GVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred hcc--cceeEEEEEEEEEEecceeeeEEEEe
Confidence 999 99999999999999987766555443
No 20
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=7.7e-20 Score=186.57 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=129.8
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcEEEeCCCCEEEEcCCCChHH
Q 041546 84 TPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQ 163 (490)
Q Consensus 84 ~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~ 163 (490)
...+.+++.|++++||++++++|+++++|+.++|||||++..+.+.+ |+||+++ ++.++++.++.+|+|+||+.|.+
T Consensus 30 Gg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~ 106 (363)
T PRK13903 30 GGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWDD 106 (363)
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHHH
Confidence 45788999999999999999999999999999999999988777676 9999997 58888876667999999999999
Q ss_pred HHHHHHhhc-----------------cCCcccccccc-ccceeeeEEEccC-CceeeccCcchhhhhhhccccCCC-ceE
Q 041546 164 LYYRIAEKR-----------------YGAMLRKYGLA-ADNIVDARLTDAN-GRLLDRKSMGEDLFWAIQGGGIGA-SFG 223 (490)
Q Consensus 164 l~~~l~~~g-----------------~G~~~~~~G~~-~D~v~~~~vV~~~-G~i~~~~~~~~dLf~a~rG~~~~g-~fG 223 (490)
|.+++.++| .-++++.||.. .|+|.++++++.+ |++++.. +.|++|+||++.|.+ +++
T Consensus 107 l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~f~~~~~~ 184 (363)
T PRK13903 107 VVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSVLKHSDRA 184 (363)
T ss_pred HHHHHHHcCCccccccCCCCcchhhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccccCCCCCE
Confidence 999999999 44778889874 7999999999965 9998754 459999999997655 489
Q ss_pred EEEEEEEEEEec
Q 041546 224 VIVPWKVRLVIV 235 (490)
Q Consensus 224 IIt~~~lkl~p~ 235 (490)
|||+++|+|.|.
T Consensus 185 IIl~a~f~L~~~ 196 (363)
T PRK13903 185 VVLEVEFQLDPS 196 (363)
T ss_pred EEEEEEEEEEcC
Confidence 999999999986
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=9.5e-20 Score=182.66 Aligned_cols=145 Identities=20% Similarity=0.183 Sum_probs=123.0
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCC-CCcEEEeCCCCEEEEcCCCChH
Q 041546 84 TPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLN-LSEISVDAAEQTAWVQAGATLG 162 (490)
Q Consensus 84 ~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~-l~~i~vd~~~~~v~v~aG~~~~ 162 (490)
...|.+++.|++++||++++++|+++++|+.++|||||++..+.+.+ |+||++++ ++.++++ +.+++||||+.+.
T Consensus 33 gg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~~ 108 (302)
T PRK14652 33 GGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPIS 108 (302)
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcHH
Confidence 45889999999999999999999999999999999999987666565 89999976 5556544 5699999999999
Q ss_pred HHHHHHHhhc-----------------cCCccc-cccccccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEE
Q 041546 163 QLYYRIAEKR-----------------YGAMLR-KYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGV 224 (490)
Q Consensus 163 ~l~~~l~~~g-----------------~G~~~~-~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGI 224 (490)
+|.+++.++| +.++++ +||.++|+|+++++|+++| +++.. ..|+.|+||++.|++ .||
T Consensus 109 ~L~~~~~~~GL~GlE~l~gIPGTvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~~~~-~~I 184 (302)
T PRK14652 109 RLPARAHAHGLVGMEFLAGIPGTLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCRLPP-GAV 184 (302)
T ss_pred HHHHHHHHcCCcccccccCCCcchhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceeccCC-CeE
Confidence 9999999999 345555 6677899999999999999 44433 359999999988654 489
Q ss_pred EEEEEEEEEecC
Q 041546 225 IVPWKVRLVIVP 236 (490)
Q Consensus 225 It~~~lkl~p~p 236 (490)
||+++|+|+|..
T Consensus 185 I~~a~~~L~~~~ 196 (302)
T PRK14652 185 ITRVEVRLRPGD 196 (302)
T ss_pred EEEEEEEEecCC
Confidence 999999999853
No 22
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.79 E-value=1.6e-18 Score=170.91 Aligned_cols=164 Identities=22% Similarity=0.290 Sum_probs=145.9
Q ss_pred cccccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEE
Q 041546 75 QNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTA 153 (490)
Q Consensus 75 ~n~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v 153 (490)
+|..|.......-..++.|+++++|++|+++|+++.+.|.+.||.++..|.+.+.- +-|||.|.+||+| ++|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceE
Confidence 45567665566778999999999999999999999999999999999988887764 3799999999997 799999999
Q ss_pred EEcCCCChHHHHHHHHhhc-----------------------cCCccccccccccceeeeEEEccCCceee------ccC
Q 041546 154 WVQAGATLGQLYYRIAEKR-----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD------RKS 204 (490)
Q Consensus 154 ~v~aG~~~~~l~~~l~~~g-----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~------~~~ 204 (490)
++++|+.+.++..+++++| .|-.--+||....+|+++|+|+|+|+++. .+.
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDN 236 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDN 236 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccC
Confidence 9999999999999999999 44445689999999999999999999985 456
Q ss_pred cchhhhhhhccccCCCceEEEEEEEEEEEecCCeEEE
Q 041546 205 MGEDLFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTR 241 (490)
Q Consensus 205 ~~~dLf~a~rG~~~~g~fGIIt~~~lkl~p~p~~~~~ 241 (490)
.+.|+-..+.|+. |++||||.+.+-+.|.|+.+.+
T Consensus 237 TgydlkhLFIGSE--GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 237 TGYDLKHLFIGSE--GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccccchhheecCC--ceeeEEeeEEEeecCCCcceeE
Confidence 7889999999999 9999999999999999986543
No 23
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=4.9e-18 Score=169.91 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=124.7
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCC-cEEEeCCCCEEEEcCCCChH
Q 041546 84 TPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLS-EISVDAAEQTAWVQAGATLG 162 (490)
Q Consensus 84 ~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~-~i~vd~~~~~v~v~aG~~~~ 162 (490)
.....+++.|++++||++++++|+++++|+.++|+|||++..+.+.+ |+||++++++ .+..+.++.+++|+||+.|.
T Consensus 18 Gg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~ 95 (295)
T PRK14649 18 GGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPMA 95 (295)
T ss_pred CceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcHH
Confidence 34667899999999999999999999999999999999999998877 9999998744 66666554489999999999
Q ss_pred HHHHHHHhhc-----------------cCCcccccc-ccccceeeeEEEccCCceeeccCcchhhhhhhccccCCCc---
Q 041546 163 QLYYRIAEKR-----------------YGAMLRKYG-LAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGAS--- 221 (490)
Q Consensus 163 ~l~~~l~~~g-----------------~G~~~~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~--- 221 (490)
+|..++.++| .-++++.|| .++|+|+++++++.+|++++... .|++|+||.+.|...
T Consensus 96 ~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~S~~~~~~~~ 173 (295)
T PRK14649 96 GTARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRTSVLKQLRAD 173 (295)
T ss_pred HHHHHHHHcCCccccccCCCCcchhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCcccceeeccccccc
Confidence 9999999999 124455555 57899999999999999988544 499999999986543
Q ss_pred -----eEEEEEEEEEEEec
Q 041546 222 -----FGVIVPWKVRLVIV 235 (490)
Q Consensus 222 -----fGIIt~~~lkl~p~ 235 (490)
-.||++++|+|.|-
T Consensus 174 ~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 174 GITWRPPLVLAARFRLHRD 192 (295)
T ss_pred ccccCCeEEEEEEEEECCC
Confidence 24999999999764
No 24
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.71 E-value=7.2e-17 Score=161.05 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=126.0
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcEEEeCCCCEEEEcCCCChHHH
Q 041546 85 PKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQL 164 (490)
Q Consensus 85 ~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~l 164 (490)
....+++.|++++||++++++|++ ++|+.++|+|+|.++.+.+.+ |+||.+.+|+.++++ +..++|+||+.|.+|
T Consensus 32 G~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~--~~~v~v~AG~~l~~L 106 (297)
T PRK14653 32 GPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVD--NDKIICESGLSLKKL 106 (297)
T ss_pred cEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEe--CCEEEEeCCCcHHHH
Confidence 356689999999999999999999 999999999999999998887 999999779999886 368999999999999
Q ss_pred HHHHHhhc-----------------cCCccccccc-cccceeeeEEEccCCceeeccCcchhhhhhhccccCCCc-eEEE
Q 041546 165 YYRIAEKR-----------------YGAMLRKYGL-AADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGAS-FGVI 225 (490)
Q Consensus 165 ~~~l~~~g-----------------~G~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~-fGII 225 (490)
..++.++| .-|+++.||. +.|+|+++++++ +|++++...+ |+.|+||.+.|+.. -.||
T Consensus 107 ~~~~~~~GL~GlE~l~gIPGTVGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~~--e~~f~YR~S~~~~~~~~iI 183 (297)
T PRK14653 107 CLVAAKNGLSGFENAYGIPGSVGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGKN--EIKFSYRNSIFKEEKDLII 183 (297)
T ss_pred HHHHHHCCCcchhhhcCCchhHHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEchh--hccccCccccCCCCCcEEE
Confidence 99999999 4478899999 789999999999 7888775443 99999999986542 2399
Q ss_pred EEEEEEEEec
Q 041546 226 VPWKVRLVIV 235 (490)
Q Consensus 226 t~~~lkl~p~ 235 (490)
|+++|+|.|-
T Consensus 184 ~~a~f~L~~~ 193 (297)
T PRK14653 184 LRVTFKLKKG 193 (297)
T ss_pred EEEEEEEecC
Confidence 9999999874
No 25
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.70 E-value=1.4e-16 Score=157.46 Aligned_cols=166 Identities=20% Similarity=0.274 Sum_probs=144.4
Q ss_pred CCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCC-CCccccCCC--EEEEEcCCCCcE-EEeCCCCEEEEc
Q 041546 81 TPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFE-GLSYVSHVP--FVVIDLLNLSEI-SVDAAEQTAWVQ 156 (490)
Q Consensus 81 ~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~-g~~~~~~~~--gvvIdl~~l~~i-~vd~~~~~v~v~ 156 (490)
....+.|+.||.|+..+||.++|+.|.++++-+.+.|||+++. +.+.+.+.. -+.+|++.||+| -+|.++-++.++
T Consensus 155 gkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~e 234 (613)
T KOG1233|consen 155 GKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAE 234 (613)
T ss_pred CccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEe
Confidence 3356789999999999999999999999999999999999964 455554322 344788999997 689999999999
Q ss_pred CCCChHHHHHHHHhhc-----------------------cCCccccccccccceeeeEEEccCCceee-----ccCcchh
Q 041546 157 AGATLGQLYYRIAEKR-----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD-----RKSMGED 208 (490)
Q Consensus 157 aG~~~~~l~~~l~~~g-----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~-----~~~~~~d 208 (490)
+|+.-.+|.+.|.+.| .||--..||.+-|.|+.+++|++.|.+.+ +-+.+||
T Consensus 235 aGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~GPD 314 (613)
T KOG1233|consen 235 AGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSGPD 314 (613)
T ss_pred cCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCCCC
Confidence 9999999999999999 56777899999999999999999998874 3467899
Q ss_pred hhhhhccccCCCceEEEEEEEEEEEecCCeEEEEEEeech
Q 041546 209 LFWAIQGGGIGASFGVIVPWKVRLVIVPSTVTRFRVSRSL 248 (490)
Q Consensus 209 Lf~a~rG~~~~g~fGIIt~~~lkl~p~p~~~~~~~~~~~~ 248 (490)
+..-+.|+. |++||||++++|+.|+|+......+.|+.
T Consensus 315 ihh~IlGSE--GTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 315 IHHIILGSE--GTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred cceEEeccC--cceeEEEEEEEEEeechhhhhcCccccCc
Confidence 999999999 99999999999999999876666666664
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=2.3e-16 Score=154.66 Aligned_cols=149 Identities=21% Similarity=0.234 Sum_probs=133.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcEEEeCCCCEEEEcCCCChH
Q 041546 83 NTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLG 162 (490)
Q Consensus 83 ~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~ 162 (490)
.......++.|++++|+.++++.+.+.++|+.+.|+|+|.+..+.+.+ +++|.+.+++.++++.+...++|++|+.|.
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~ 94 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPWH 94 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcHH
Confidence 345677999999999999999999999999999999999999888876 999999888888887777799999999999
Q ss_pred HHHHHHHhhc-----------------cCCccccccc-cccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEE
Q 041546 163 QLYYRIAEKR-----------------YGAMLRKYGL-AADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGV 224 (490)
Q Consensus 163 ~l~~~l~~~g-----------------~G~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGI 224 (490)
+|.+++.++| .-|+++.||. +.|.+.++++++.+|++++... .||.|+||.|.|.....|
T Consensus 95 ~l~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~--~el~f~YR~S~f~~~~~v 172 (291)
T COG0812 95 DLVRFALENGLSGLEFLAGIPGSVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSA--EELGFGYRTSPFKKEYLV 172 (291)
T ss_pred HHHHHHHHcCCcchhhhcCCCcccchhhhccCcccccchheeEEEEEEEcCCCCEEEEEH--HHhCcccccCcCCCCCEE
Confidence 9999999999 3478899988 5699999999999999998544 499999999997666699
Q ss_pred EEEEEEEEEec
Q 041546 225 IVPWKVRLVIV 235 (490)
Q Consensus 225 It~~~lkl~p~ 235 (490)
|++++|+|.|-
T Consensus 173 vl~v~f~L~~~ 183 (291)
T COG0812 173 VLSVEFKLTKG 183 (291)
T ss_pred EEEEEEEeCCC
Confidence 99999999874
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=4.4e-16 Score=154.99 Aligned_cols=146 Identities=13% Similarity=0.143 Sum_probs=127.2
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccc-cCCCEEEEEcCCCCcEEEeCCCCEEEEcCCCChHH
Q 041546 85 PKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYV-SHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQ 163 (490)
Q Consensus 85 ~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~-~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~ 163 (490)
....+++.|++++|+++++++++++++|+.+.|+|+|.+..+.+ .+ |+||.+.+|+.++++. ..++|+||+.|.+
T Consensus 31 G~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~ 106 (302)
T PRK14650 31 GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNFED 106 (302)
T ss_pred cEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcHHH
Confidence 35668999999999999999999999999999999999998887 76 8999886799988763 4799999999999
Q ss_pred HHHHHHhhc-----------------cCCccccccc-cccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEEE
Q 041546 164 LYYRIAEKR-----------------YGAMLRKYGL-AADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVI 225 (490)
Q Consensus 164 l~~~l~~~g-----------------~G~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGII 225 (490)
|..++.++| .-|+++.||. +.|.|.++++++.+|++++... .|+.|+||.+.|...-.||
T Consensus 107 l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~--~e~~f~YR~S~f~~~~~iI 184 (302)
T PRK14650 107 LCKFALQNELSGLEFIYGLPGTLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKKF--KKEEFKYKISPFQNKNTFI 184 (302)
T ss_pred HHHHHHHcCCchhhhhcCCCcchhHHHHhhCCccccchheeEEEEEEEECCCCEEEEEH--HHcCcccccccCCCCCEEE
Confidence 999999999 3477889986 5699999999999999987544 4999999999865544699
Q ss_pred EEEEEEEEecC
Q 041546 226 VPWKVRLVIVP 236 (490)
Q Consensus 226 t~~~lkl~p~p 236 (490)
++++|+|.|-.
T Consensus 185 l~a~f~L~~~~ 195 (302)
T PRK14650 185 LKATLNLKKGN 195 (302)
T ss_pred EEEEEEEcCCC
Confidence 99999998753
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=8.3e-16 Score=155.24 Aligned_cols=145 Identities=15% Similarity=0.098 Sum_probs=124.5
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcEEEe-CCC--CEEEEcCCCCh
Q 041546 85 PKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVD-AAE--QTAWVQAGATL 161 (490)
Q Consensus 85 ~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd-~~~--~~v~v~aG~~~ 161 (490)
....+++.|+|++|+++++++|+++++|+.+.|+|+|.+..+ +.+ |+||.+ +++.++++ .++ ..++|+||+.|
T Consensus 19 G~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~ 94 (334)
T PRK00046 19 ARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGENW 94 (334)
T ss_pred cEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCCcH
Confidence 356789999999999999999999999999999999999988 666 999987 58888873 222 27999999999
Q ss_pred HHHHHHHHhhc-----------------cCCccccccc-cccceeeeEEEccC-CceeeccCcchhhhhhhccccCCCc-
Q 041546 162 GQLYYRIAEKR-----------------YGAMLRKYGL-AADNIVDARLTDAN-GRLLDRKSMGEDLFWAIQGGGIGAS- 221 (490)
Q Consensus 162 ~~l~~~l~~~g-----------------~G~~~~~~G~-~~D~v~~~~vV~~~-G~i~~~~~~~~dLf~a~rG~~~~g~- 221 (490)
.+|.+++.++| .-|+++.||. +.|.|.++++++.+ |++++... .|+.|+||.+.|...
T Consensus 95 ~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~--~e~~f~YR~S~f~~~~ 172 (334)
T PRK00046 95 HDLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA--AECRFGYRDSIFKHEY 172 (334)
T ss_pred HHHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH--HHcCcccccccCCCCC
Confidence 99999999999 3477899987 56999999999987 99887544 499999999986654
Q ss_pred --eEEEEEEEEEEEec
Q 041546 222 --FGVIVPWKVRLVIV 235 (490)
Q Consensus 222 --fGIIt~~~lkl~p~ 235 (490)
--||++++|+|.|-
T Consensus 173 ~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 173 PDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCCEEEEEEEEEecCC
Confidence 35999999999884
No 29
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.65 E-value=6.3e-17 Score=116.54 Aligned_cols=47 Identities=40% Similarity=0.769 Sum_probs=35.0
Q ss_pred cccccCCCccCCCCCCCcchhhhhhhhhhhhcccHHHHHHhHhccCCCCCCcCCCCCC
Q 041546 422 AYINYRDLDIGTNNRGHTSIKQASIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSIP 479 (490)
Q Consensus 422 aY~Ny~d~d~~~~~~~~~s~~~~~~~g~~yfg~n~~RL~~vK~kyDP~n~F~~~qsI~ 479 (490)
+|+||+|.+++ ...|...|||+|++||++||++|||+|+|+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999998876 237899999999999999999999999999999997
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=6.6e-15 Score=148.63 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=123.4
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcEEEe--CCC-CEEEEcCCCCh
Q 041546 85 PKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVD--AAE-QTAWVQAGATL 161 (490)
Q Consensus 85 ~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd--~~~-~~v~v~aG~~~ 161 (490)
....+++.|++.+|+++++++++++++|+.+.|+|+|.+..+.+.+ |+||.+.+|+.+++. .++ ..++|+||+.|
T Consensus 28 G~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~ 105 (354)
T PRK14648 28 GAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPV 105 (354)
T ss_pred cEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCCcH
Confidence 4567899999999999999999999999999999999999998887 999998678888752 223 47999999999
Q ss_pred HHHHHHHHhhc-----------------cCCccccccc-cccceeeeEEE--------------------ccCCceee--
Q 041546 162 GQLYYRIAEKR-----------------YGAMLRKYGL-AADNIVDARLT--------------------DANGRLLD-- 201 (490)
Q Consensus 162 ~~l~~~l~~~g-----------------~G~~~~~~G~-~~D~v~~~~vV--------------------~~~G~i~~-- 201 (490)
.+|..++.++| .-|+++.||. +.|.|.+++++ +.+|+++.
T Consensus 106 ~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (354)
T PRK14648 106 AALLAFCAHHALRGLETFAGLPGSVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKRGECLGLD 185 (354)
T ss_pred HHHHHHHHHcCCcchhhhcCCCcchhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCCCceeccc
Confidence 99999999999 3477899987 56999999999 55677620
Q ss_pred ---------ccCcchhhhhhhccccCCCc--------eEEEEEEEEEEEec
Q 041546 202 ---------RKSMGEDLFWAIQGGGIGAS--------FGVIVPWKVRLVIV 235 (490)
Q Consensus 202 ---------~~~~~~dLf~a~rG~~~~g~--------fGIIt~~~lkl~p~ 235 (490)
..-.+.|+.|+||.+.|... --||++++|+|.|-
T Consensus 186 ~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~ 236 (354)
T PRK14648 186 GGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPG 236 (354)
T ss_pred ccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCC
Confidence 01234699999999986542 34999999999874
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.43 E-value=8e-13 Score=129.99 Aligned_cols=132 Identities=19% Similarity=0.168 Sum_probs=110.6
Q ss_pred CccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCC-CCcEEEeCCCCEEEEcCCCChHHH
Q 041546 86 KPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLN-LSEISVDAAEQTAWVQAGATLGQL 164 (490)
Q Consensus 86 ~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~-l~~i~vd~~~~~v~v~aG~~~~~l 164 (490)
...+++ |++++|+++++ ++|+.+.|+|+|.+..+.+.+ |+||.+.+ ++.++++ + +|+||+.|.+|
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~--~---~a~AG~~~~~l 85 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLD--G---WVGGGVPLPGL 85 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeEC--C---EEECCCcHHHH
Confidence 344666 99999999988 589999999999999998887 99998865 6666543 2 69999999999
Q ss_pred HHHHHhhc-----------------cCCccccccc-cccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEEEE
Q 041546 165 YYRIAEKR-----------------YGAMLRKYGL-AADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIV 226 (490)
Q Consensus 165 ~~~l~~~g-----------------~G~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGIIt 226 (490)
..++.++| .-|+++.||. +.|.|.++++++ +|++++... .|+.|+||.+.|.. -.||+
T Consensus 86 ~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~--~e~~f~YR~S~~~~-~~iIl 161 (273)
T PRK14651 86 VRRAARLGLSGLEGLVGIPAQVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSP--DELGFGYRHSGLPP-GHVVT 161 (273)
T ss_pred HHHHHHCCCcchhhhcCCCcchhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEEH--HHccccccccCCCC-CEEEE
Confidence 99999999 3477889986 569999999997 899887554 49999999998654 35999
Q ss_pred EEEEEEEec
Q 041546 227 PWKVRLVIV 235 (490)
Q Consensus 227 ~~~lkl~p~ 235 (490)
+++|+|.|-
T Consensus 162 ~a~f~l~~~ 170 (273)
T PRK14651 162 RVRLKLRPS 170 (273)
T ss_pred EEEEEECCC
Confidence 999999874
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.23 E-value=8e-12 Score=124.29 Aligned_cols=145 Identities=20% Similarity=0.229 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccC---CCEEEEEcCCCCc-EEEeCCCCEEEEcCCCChHHHHHHHH
Q 041546 94 LDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSH---VPFVVIDLLNLSE-ISVDAAEQTAWVQAGATLGQLYYRIA 169 (490)
Q Consensus 94 ~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~---~~gvvIdl~~l~~-i~vd~~~~~v~v~aG~~~~~l~~~l~ 169 (490)
+.+.+||.-|+..++.+-+-....+.-+|+..+.... ...--|++..|.. +++|.++.+|+|+|+++++|+.++|.
T Consensus 61 qrVkkIqkqlkew~d~s~k~~lctaRp~Wltvs~r~~dykk~h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~li 140 (543)
T KOG1262|consen 61 QRVKKIQKQLKEWLDDSEKKPLCTARPGWLTVSTRFFDYKKCHHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLI 140 (543)
T ss_pred HHHHHHHHHHHhhccccccCcccccCCCeEEEEEecchhhhhcccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhc
Confidence 4455666666655555544444444555554443321 1123455554445 48999999999999999999999999
Q ss_pred hhc----------------------cCCccccccccccceeeeEEEccCCceee--ccCcchhhhhhhccccCCCceEEE
Q 041546 170 EKR----------------------YGAMLRKYGLAADNIVDARLTDANGRLLD--RKSMGEDLFWAIQGGGIGASFGVI 225 (490)
Q Consensus 170 ~~g----------------------~G~~~~~~G~~~D~v~~~~vV~~~G~i~~--~~~~~~dLf~a~rG~~~~g~fGII 225 (490)
+.| +-..|.+||+..+.+.+.|||++||++++ .+++++|||+|+-.|. |++|..
T Consensus 141 p~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSq--GTlgfL 218 (543)
T KOG1262|consen 141 PKGYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQ--GTLGFL 218 (543)
T ss_pred cCCceeeeecccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEccccc--Cchhee
Confidence 999 33568899999999999999999999997 5567899999999999 999999
Q ss_pred EEEEEEEEecCCeEE
Q 041546 226 VPWKVRLVIVPSTVT 240 (490)
Q Consensus 226 t~~~lkl~p~p~~~~ 240 (490)
+.+++|+.|+.+.+.
T Consensus 219 VaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 219 VAATIRIIKVKKYVK 233 (543)
T ss_pred eeeEEEEEeccceEE
Confidence 999999999988654
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.13 E-value=2.1e-10 Score=111.91 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=101.8
Q ss_pred CccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcEEEeCCCCEEEEcCCCChHHHH
Q 041546 86 KPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEISVDAAEQTAWVQAGATLGQLY 165 (490)
Q Consensus 86 ~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~v~aG~~~~~l~ 165 (490)
...+++.|.+.+ + ++|+.+.|+|+|.+..+.+.+ +++ -+.+++.++++ +.+++|+||+.|.+|.
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~--~~~v~~~AG~~l~~l~ 81 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKID--GECLEIGGATKSGKIF 81 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEe--CCEEEEEcCCcHHHHH
Confidence 456778888887 5 899999999999999887753 555 34568888875 3589999999999999
Q ss_pred HHHHhhc-----------------cCCccccccc-cccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEEEEE
Q 041546 166 YRIAEKR-----------------YGAMLRKYGL-AADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGVIVP 227 (490)
Q Consensus 166 ~~l~~~g-----------------~G~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGIIt~ 227 (490)
+++.++| .-|+++.||. +.|.|+++++++ |+ + ...|+.|+||.+.|. .||++
T Consensus 82 ~~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~~---~iIl~ 151 (257)
T PRK13904 82 NYAKKNNLGGFEFLGKLPGTLGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGIN---GVILE 151 (257)
T ss_pred HHHHHCCCchhhhhcCCCccHHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCCC---cEEEE
Confidence 9999999 4477889987 569999999998 42 1 246999999988843 49999
Q ss_pred EEEEEEecC
Q 041546 228 WKVRLVIVP 236 (490)
Q Consensus 228 ~~lkl~p~p 236 (490)
++|+|.|-.
T Consensus 152 a~f~l~~~~ 160 (257)
T PRK13904 152 ARFKKTHGF 160 (257)
T ss_pred EEEEECCCC
Confidence 999998853
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.70 E-value=0.015 Score=53.81 Aligned_cols=75 Identities=25% Similarity=0.301 Sum_probs=51.8
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCc-cccCCCEEEEEcCCC---CcEEEeCCCCEEEEcCCCChH
Q 041546 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLS-YVSHVPFVVIDLLNL---SEISVDAAEQTAWVQAGATLG 162 (490)
Q Consensus 87 P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~-~~~~~~gvvIdl~~l---~~i~vd~~~~~v~v~aG~~~~ 162 (490)
+..+++|+|.+|+.++++ .+-..++.+||++....- .+......+||++++ +.|+.+ ++.+++||++++.
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~--~~~l~IGA~vtl~ 75 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISED--DGGLRIGAAVTLS 75 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEE--TSEEEEETTSBHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEe--ccEEEECCCccHH
Confidence 456899999999999998 233679999999853211 111123689999875 445555 6789999999999
Q ss_pred HHHHH
Q 041546 163 QLYYR 167 (490)
Q Consensus 163 ~l~~~ 167 (490)
++.+.
T Consensus 76 ~l~~~ 80 (171)
T PF00941_consen 76 ELEES 80 (171)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 99876
No 35
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.39 E-value=0.14 Score=55.04 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=56.0
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-ccccCCCEEEEEcCCCC---cEEEeCCCCEEEEcCCCChH
Q 041546 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGL-SYVSHVPFVVIDLLNLS---EISVDAAEQTAWVQAGATLG 162 (490)
Q Consensus 87 P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~-~~~~~~~gvvIdl~~l~---~i~vd~~~~~v~v~aG~~~~ 162 (490)
..-+++|+|.+|+.++++. +. ..++.+||++.... .........+||++++. .|+. +++.+++||++++.
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~--~~~~l~IGA~vT~~ 265 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEE--TDDGIEIGAAVTLT 265 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEE--cCCEEEEecCCcHH
Confidence 3468999999999988763 22 36789999996321 12222236889998754 4554 45789999999999
Q ss_pred HHHHHHHhh
Q 041546 163 QLYYRIAEK 171 (490)
Q Consensus 163 ~l~~~l~~~ 171 (490)
++...+.++
T Consensus 266 el~~~l~~~ 274 (467)
T TIGR02963 266 DAYAALAKR 274 (467)
T ss_pred HHHHHHHHH
Confidence 998655443
No 36
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=95.02 E-value=0.066 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.5
Q ss_pred ccHHHHHHhHhccCCCCCCcCC
Q 041546 454 NNFKRLVHVKTMVDPYDFFKNE 475 (490)
Q Consensus 454 ~n~~RL~~vK~kyDP~n~F~~~ 475 (490)
.++++..+||+++||+++|.|+
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 5899999999999999999876
No 37
>PRK09799 putative oxidoreductase; Provisional
Probab=94.91 E-value=0.084 Score=52.16 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=52.8
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCC--CcEEEeCCCCEEEEcCCCChHHHHH
Q 041546 89 VIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNL--SEISVDAAEQTAWVQAGATLGQLYY 166 (490)
Q Consensus 89 ~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l--~~i~vd~~~~~v~v~aG~~~~~l~~ 166 (490)
-+..|+|.+|+.++++ +++-..++.+||++.... .....+.++||++++ +.|+ .+++.+++|+++++.++.+
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~-~~~~~~~~lIdi~~ieL~~I~--~~~~~l~IGA~vT~~~l~~ 77 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNAT-PTRTDKKIAISLQDLELDWIE--WDNGALRIGAMSRLQPLRD 77 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhh-hCCCCCCEEEEcCCCCCCeEE--ecCCEEEEccCCcHHHHHh
Confidence 4689999999998876 343346789999997332 122224788999864 4454 4567899999999999986
Q ss_pred H
Q 041546 167 R 167 (490)
Q Consensus 167 ~ 167 (490)
.
T Consensus 78 ~ 78 (258)
T PRK09799 78 A 78 (258)
T ss_pred C
Confidence 3
No 38
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.42 E-value=0.25 Score=48.80 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=50.1
Q ss_pred EEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCC--CcEEEeCCCCEEEEcCCCChHHHHH
Q 041546 90 IITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNL--SEISVDAAEQTAWVQAGATLGQLYY 166 (490)
Q Consensus 90 vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l--~~i~vd~~~~~v~v~aG~~~~~l~~ 166 (490)
++.|+|.+|+.++++ +++-.-++.+||++....-. .....++||+.++ +.|+. +++.+++||++++.++..
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~-~~~~~~lIdl~~ieL~~I~~--~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT-RTDKKVAISLDKLALDKIEL--QGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc-ccCCCEEEEcCCCCCCcEEe--cCCEEEEEeCCcHHHHHh
Confidence 678999999988766 33323577899999742211 1123588998864 44554 457899999999999875
No 39
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=93.19 E-value=0.17 Score=50.27 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=25.6
Q ss_pred hhhhhhhhcccHHHHHHhHhccCCCCCCcCCCCC
Q 041546 445 SIWGSKYFKNNFKRLVHVKTMVDPYDFFKNEQSI 478 (490)
Q Consensus 445 ~~~g~~yfg~n~~RL~~vK~kyDP~n~F~~~qsI 478 (490)
+.| +..||+.++|+++.|++|||.+++.-.|.|
T Consensus 248 ~dW-~~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDW-RRHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHH-HHHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHH-HHHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 478 678999999999999999999999988887
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=91.08 E-value=0.42 Score=48.68 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=51.2
Q ss_pred cEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-ccccCCCEEEEEcCCC---CcEEEeCCCCEEEEcCCCChHH
Q 041546 88 QVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGL-SYVSHVPFVVIDLLNL---SEISVDAAEQTAWVQAGATLGQ 163 (490)
Q Consensus 88 ~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~-~~~~~~~gvvIdl~~l---~~i~vd~~~~~v~v~aG~~~~~ 163 (490)
.-++.|+|.+|..++++- ++ .-++.+||++.... -.+...+..+||+.++ +.|+. +++.+++|+++++.+
T Consensus 5 f~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~--~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 5 FRTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLST--LADGLRIGAGVTLAA 78 (321)
T ss_pred ceEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEe--cCCEEEEeccCcHHH
Confidence 458999999999988763 22 34689999985221 1112224688999865 55555 356799999999999
Q ss_pred HHH
Q 041546 164 LYY 166 (490)
Q Consensus 164 l~~ 166 (490)
+.+
T Consensus 79 l~~ 81 (321)
T TIGR03195 79 LAE 81 (321)
T ss_pred Hhh
Confidence 854
No 41
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=90.90 E-value=0.36 Score=48.56 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=51.9
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCC-CccccCCCEEEEEcCCCC---cEEEeCCCCEEEEcCCCChHHH
Q 041546 89 VIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEG-LSYVSHVPFVVIDLLNLS---EISVDAAEQTAWVQAGATLGQL 164 (490)
Q Consensus 89 ~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g-~~~~~~~~gvvIdl~~l~---~i~vd~~~~~v~v~aG~~~~~l 164 (490)
-++.|+|.+|..++++. +. ..++.+||++... ...+...+..+||++++. .|+.. +++.+++|+++++.++
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~-~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLA-EDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEec-CCCEEEEEeCCcHHHH
Confidence 57899999999988773 22 3578999999632 112222347889998754 45543 3467999999999999
Q ss_pred HH
Q 041546 165 YY 166 (490)
Q Consensus 165 ~~ 166 (490)
.+
T Consensus 81 ~~ 82 (291)
T PRK09971 81 IE 82 (291)
T ss_pred hc
Confidence 75
No 42
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=90.81 E-value=0.66 Score=47.44 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=92.3
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccc-cCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChHHH
Q 041546 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYV-SHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLGQL 164 (490)
Q Consensus 87 P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~-~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l 164 (490)
-..++.|.+.+|...++.- +-..++.-|++++.-.... ..+=..||-..++..+ +|+...+.+++++|+++.+.
T Consensus 203 ~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a 278 (493)
T COG4630 203 DDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQA 278 (493)
T ss_pred CceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHH
Confidence 3468899999999988752 4457778888886322111 0111334444444443 34445788999999999999
Q ss_pred HHHHHhhc-----------------cCCcccccc---cccc-----ceeeeEEEccCCceee-ccCcchhhhhhhccccC
Q 041546 165 YYRIAEKR-----------------YGAMLRKYG---LAAD-----NIVDARLTDANGRLLD-RKSMGEDLFWAIQGGGI 218 (490)
Q Consensus 165 ~~~l~~~g-----------------~G~~~~~~G---~~~D-----~v~~~~vV~~~G~i~~-~~~~~~dLf~a~rG~~~ 218 (490)
+..|..+= .|...+.-+ .+.| ..+++++++..|.-.+ ..- +|+|-+|+--.
T Consensus 279 ~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDtPPaLIALgA~ltLr~g~~~RtlPL--e~~Fi~Y~kqd- 355 (493)
T COG4630 279 YRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDTPPALIALGATLTLRSGDGRRTLPL--EDYFIAYGKQD- 355 (493)
T ss_pred HHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCCCchhhhcCcEEEEEecCCcccccH--HHHHHHhhhhc-
Confidence 99888753 222222221 2334 2478888888777554 222 48888886433
Q ss_pred CCceEEEEEEEEEEEecCC---eEEEEEEeechhhHHHHHHHHH
Q 041546 219 GASFGVIVPWKVRLVIVPS---TVTRFRVSRSLEQNATKIVHKW 259 (490)
Q Consensus 219 ~g~fGIIt~~~lkl~p~p~---~~~~~~~~~~~~~~~~~~~~~~ 259 (490)
-..--.|-++.+ |.|. ...++.+++..++++..+...+
T Consensus 356 r~pGEfVe~v~v---P~~~~~~rfa~yKisKRrdeDISAv~~Af 396 (493)
T COG4630 356 RQPGEFVEAVRV---PLPAPSERFAAYKISKRRDEDISAVCGAF 396 (493)
T ss_pred cCcchhhhheec---CCCCcchhhhhhhhhhhccchHHHHHhHh
Confidence 111123333322 3332 2344555555555655555443
No 43
>PLN02906 xanthine dehydrogenase
Probab=90.08 E-value=1.3 Score=53.62 Aligned_cols=77 Identities=10% Similarity=0.096 Sum_probs=53.9
Q ss_pred cEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-ccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChHHHH
Q 041546 88 QVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGL-SYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLGQLY 165 (490)
Q Consensus 88 ~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~-~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~ 165 (490)
.-++.|+|.+|+.++++-. . .-++.+||++.... ........++||++++..+ .|..+++.+++||++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 4589999999999876642 1 35788999997321 1222234789999875443 233345689999999999999
Q ss_pred HHH
Q 041546 166 YRI 168 (490)
Q Consensus 166 ~~l 168 (490)
..|
T Consensus 305 ~~l 307 (1319)
T PLN02906 305 NLF 307 (1319)
T ss_pred HHH
Confidence 863
No 44
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=88.36 E-value=0.57 Score=46.38 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=47.8
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-ccc-cCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChHHHHH
Q 041546 93 PLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGL-SYV-SHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLGQLYY 166 (490)
Q Consensus 93 P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~-~~~-~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~~ 166 (490)
|+|.+|+.++++.. . ..++.+||+++... -.. ...+..+||++++... .|+.+++.+++|+++++.++.+
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 77888888877742 2 36789999986322 111 1113688999876543 2444567899999999999964
No 45
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=87.45 E-value=0.49 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.0
Q ss_pred ccHHHHHHhHhccCCCCCCcCC
Q 041546 454 NNFKRLVHVKTMVDPYDFFKNE 475 (490)
Q Consensus 454 ~n~~RL~~vK~kyDP~n~F~~~ 475 (490)
.++++..++|+++||+|+|.|+
T Consensus 233 p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 233 PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp TTHHHHHHHHHHH-TT-TT--H
T ss_pred cCHHHHHHHHHHhCCCCCCCCH
Confidence 7999999999999999999874
No 46
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=87.39 E-value=4.2 Score=49.37 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=54.4
Q ss_pred cEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCc-cccCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChHHHH
Q 041546 88 QVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLS-YVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLGQLY 165 (490)
Q Consensus 88 ~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~-~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~ 165 (490)
.-++.|+|.+|+.++++. +. .-++..||+++...- ........+||++++..+ .+..+++.+++||++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 358999999999988764 22 357889999973321 211123578999875543 233446789999999999998
Q ss_pred HHHH
Q 041546 166 YRIA 169 (490)
Q Consensus 166 ~~l~ 169 (490)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8643
No 47
>PLN00192 aldehyde oxidase
Probab=84.32 E-value=2.3 Score=51.56 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=55.4
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEEEEcCCCCcE-EEeCCCCEEEEcCCCChHHHH
Q 041546 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVVIDLLNLSEI-SVDAAEQTAWVQAGATLGQLY 165 (490)
Q Consensus 87 P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~v~aG~~~~~l~ 165 (490)
..-++.|+|.+|+.+++......+-.-++..||+++... .......++||++++..+ .|..+++.+++||++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~-k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYY-KDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceee-eccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 346899999999998876421012247788999996432 122224788999875443 233345789999999999988
Q ss_pred HHHH
Q 041546 166 YRIA 169 (490)
Q Consensus 166 ~~l~ 169 (490)
..+.
T Consensus 312 ~~l~ 315 (1344)
T PLN00192 312 EALR 315 (1344)
T ss_pred HHHH
Confidence 6543
No 48
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=78.50 E-value=6.2 Score=39.47 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=53.0
Q ss_pred ccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCC-ccccCCCEEEEEcCCCCc--EEEeCCCCEEEEcCCCChHH
Q 041546 87 PQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGL-SYVSHVPFVVIDLLNLSE--ISVDAAEQTAWVQAGATLGQ 163 (490)
Q Consensus 87 P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~-~~~~~~~gvvIdl~~l~~--i~vd~~~~~v~v~aG~~~~~ 163 (490)
+..+.+|.|.+|...+++ +.+ .-++.+|||++... -.+...+.-+||+.++.. ..+..+++.+++||-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 567899999888777766 444 67899999997532 122223467789887642 22334567799999999999
Q ss_pred HH
Q 041546 164 LY 165 (490)
Q Consensus 164 l~ 165 (490)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 86
No 49
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=75.49 E-value=3.2 Score=39.62 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=19.3
Q ss_pred hhhhhhcc-cHHHHHHhHhccCCCCCCc
Q 041546 447 WGSKYFKN-NFKRLVHVKTMVDPYDFFK 473 (490)
Q Consensus 447 ~g~~yfg~-n~~RL~~vK~kyDP~n~F~ 473 (490)
|-...++. -++-+++||+.+||+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 33344554 6899999999999999995
No 50
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=66.87 E-value=16 Score=32.64 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=33.3
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEEc-CCCCCCCCcccc
Q 041546 89 VIITPLDVSQVQAAIKCSKKHGLQIRVRS-GGHDFEGLSYVS 129 (490)
Q Consensus 89 ~vv~P~s~~dV~~~v~~a~~~~~~v~v~g-gGh~~~g~~~~~ 129 (490)
+=+.|++.+.+...+.+++.+++||++.. .|+.+.+.-.+.
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV~gf 49 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYVSGF 49 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEEecc
Confidence 45889999999999999999999998876 577765544433
No 51
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=51.52 E-value=20 Score=36.26 Aligned_cols=57 Identities=21% Similarity=0.379 Sum_probs=39.2
Q ss_pred eEecCCCCChHHHhhhcccccccCCCCCCCccEEEecCC------HHHHHHHHHHHHhcC------CcEEEEcCCC
Q 041546 57 VIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLD------VSQVQAAIKCSKKHG------LQIRVRSGGH 120 (490)
Q Consensus 57 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s------~~dV~~~v~~a~~~~------~~v~v~ggGh 120 (490)
.|-.|+...|.+.+. .-+.||. ....+++|.. +++|.++++.+++.+ +=|.+||||+
T Consensus 19 vITs~~gAa~~D~~~--~~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 19 VITSPTGAAIQDFLR--TLKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEeCCchHHHHHHHH--HHHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 344466677888765 2244764 4557777765 578999999998654 6677888885
No 52
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=47.73 E-value=57 Score=35.48 Aligned_cols=123 Identities=21% Similarity=0.307 Sum_probs=74.3
Q ss_pred hHHHHHhcCCCCCCCcceEecCCCCChHHHhhhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhc-CCcEEE---
Q 041546 40 SLIQCLSMHSDNSSISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKH-GLQIRV--- 115 (490)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~-~~~v~v--- 115 (490)
.+.+-+.++..+ |.+.++.-+=|+-+.+.. ++..+. ....|-..+.|-++++|.+++++|+++ ..||.+
T Consensus 112 rLv~kara~G~~--I~gvvIsAGIP~le~A~E-lI~~L~----~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~e 184 (717)
T COG4981 112 RLVQKARASGAP--IDGVVISAGIPSLEEAVE-LIEELG----DDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWE 184 (717)
T ss_pred HHHHHHHhcCCC--cceEEEecCCCcHHHHHH-HHHHHh----hcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEe
Confidence 355666655433 789999988888776532 232221 234688999999999999999999998 456655
Q ss_pred --EcCCCC-CCCCccccCCCEEEEEc-CCCCcEEEeCCCCEEEEcCCCChHH-HHHHHHhhccCCcccccccc
Q 041546 116 --RSGGHD-FEGLSYVSHVPFVVIDL-LNLSEISVDAAEQTAWVQAGATLGQ-LYYRIAEKRYGAMLRKYGLA 183 (490)
Q Consensus 116 --~ggGh~-~~g~~~~~~~~gvvIdl-~~l~~i~vd~~~~~v~v~aG~~~~~-l~~~l~~~g~G~~~~~~G~~ 183 (490)
|+|||. |...+. .+|-+ +.+++ .++-++.||+|.--.+ -+.+| -|.-+..||+.
T Consensus 185 gGraGGHHSweDld~------llL~tYs~lR~----~~NIvl~vGgGiGtp~~aa~YL----TGeWSt~~g~P 243 (717)
T COG4981 185 GGRAGGHHSWEDLDD------LLLATYSELRS----RDNIVLCVGGGIGTPDDAAPYL----TGEWSTAYGFP 243 (717)
T ss_pred cCccCCccchhhccc------HHHHHHHHHhc----CCCEEEEecCCcCChhhccccc----ccchhhhcCCC
Confidence 345554 665432 22322 33333 2244577888875443 22222 34445566653
No 53
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=47.68 E-value=12 Score=39.56 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=22.5
Q ss_pred hhhhhhc-ccHHHHHHhHhccCCCCCCcC
Q 041546 447 WGSKYFK-NNFKRLVHVKTMVDPYDFFKN 474 (490)
Q Consensus 447 ~g~~yfg-~n~~RL~~vK~kyDP~n~F~~ 474 (490)
|-...|+ ..++-+++||+.+||+|+|+-
T Consensus 383 ~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 383 FMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 4445555 479999999999999999963
No 54
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=44.61 E-value=32 Score=37.93 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=27.4
Q ss_pred hhhhhhhhc-ccHHHHHHhHhccCCCCCCcCCCCCC
Q 041546 445 SIWGSKYFK-NNFKRLVHVKTMVDPYDFFKNEQSIP 479 (490)
Q Consensus 445 ~~~g~~yfg-~n~~RL~~vK~kyDP~n~F~~~qsI~ 479 (490)
..|-..+|+ +.++=+++||+.+||.|+++-.-=+|
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 356667777 47999999999999999997555444
No 55
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=43.89 E-value=10 Score=31.51 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=9.3
Q ss_pred CCCCCCChHHHHHHHHHhhhhh
Q 041546 1 MKSPFSPIFPFVFALLLSYHIR 22 (490)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (490)
|.+..+.||.++|+++|++|+.
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 6644443333333334444433
No 56
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=41.04 E-value=29 Score=36.87 Aligned_cols=57 Identities=30% Similarity=0.434 Sum_probs=39.7
Q ss_pred eEecCCCCChHHHhhhcccccccCCCCCCCccEEEecCCH------HHHHHHHHHHHhc--CCcEEEEcCCC
Q 041546 57 VIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDV------SQVQAAIKCSKKH--GLQIRVRSGGH 120 (490)
Q Consensus 57 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~------~dV~~~v~~a~~~--~~~v~v~ggGh 120 (490)
.|-.|+...+.+.+. .-+.||. .-..+++|..+ .+|.++++.+.+. ++=|.+||||+
T Consensus 140 viTs~~gAa~~D~~~--~~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 140 VITSPTGAAIRDILT--VLRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred EEeCCccHHHHHHHH--HHHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 344456677888765 3356774 23577777766 7899999888874 66678888884
No 57
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=37.73 E-value=20 Score=37.03 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.3
Q ss_pred ccc-HHHHHHhHhccCCCCCCcC
Q 041546 453 KNN-FKRLVHVKTMVDPYDFFKN 474 (490)
Q Consensus 453 g~n-~~RL~~vK~kyDP~n~F~~ 474 (490)
..+ ++-.++||++|||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 345 6778999999999999963
No 58
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=36.18 E-value=1.3e+02 Score=29.85 Aligned_cols=90 Identities=14% Similarity=0.011 Sum_probs=59.8
Q ss_pred ceEecCCCCChHHHhhhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCCCCCCccccCCCEEE
Q 041546 56 KVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHDFEGLSYVSHVPFVV 135 (490)
Q Consensus 56 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~gvv 135 (490)
..|++|+-++.+.+.. . ...++.+|++++-+...+.|.+-.+.=|||... ... -++
T Consensus 133 a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~---D~l 188 (263)
T COG0351 133 ATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV---DVL 188 (263)
T ss_pred CeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce---eEE
Confidence 5589999888776532 1 377899999999999999999988888899864 112 233
Q ss_pred EEcCCC---CcEEEeCCCCEEEEcCCCChHHHHHHHHhhc
Q 041546 136 IDLLNL---SEISVDAAEQTAWVQAGATLGQLYYRIAEKR 172 (490)
Q Consensus 136 Idl~~l---~~i~vd~~~~~v~v~aG~~~~~l~~~l~~~g 172 (490)
.|-..+ ..-.++.. =+=|+||++......-..+|
T Consensus 189 ~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G 225 (263)
T COG0351 189 YDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKG 225 (263)
T ss_pred EcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcC
Confidence 332211 11123222 13589999998776666666
No 59
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=35.14 E-value=1.8e+02 Score=23.39 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=49.4
Q ss_pred EEeCCCCEEEEcCCCChHHHHHHHHhhccCCccccccccccceeeeEEEccCCceeeccCcchhhhhhhccccCCCceEE
Q 041546 145 SVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGGIGASFGV 224 (490)
Q Consensus 145 ~vd~~~~~v~v~aG~~~~~l~~~l~~~g~G~~~~~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~~g~fGI 224 (490)
..+.+.+.+.+..=-+|..|...+.. .|-+..|. +.+..+|.||.+++... +.||.=++|-+. ...++
T Consensus 6 ~~~g~~RRf~~~~~pt~~~L~~kl~~--------Lf~lp~~~-~~vtYiDeD~D~ITlss-d~eL~d~~~~~~--~~~~~ 73 (82)
T cd06397 6 SFLGDTRRIVFPDIPTWEALASKLEN--------LYNLPEIK-VGVTYIDNDNDEITLSS-NKELQDFYRLSH--RESTE 73 (82)
T ss_pred EeCCceEEEecCCCccHHHHHHHHHH--------HhCCChhH-eEEEEEcCCCCEEEecc-hHHHHHHHHhcc--cccCc
Confidence 33334445556666678888777754 45666555 88999999999998433 358999999666 44677
Q ss_pred EEEEE
Q 041546 225 IVPWK 229 (490)
Q Consensus 225 It~~~ 229 (490)
|.++.
T Consensus 74 v~k~~ 78 (82)
T cd06397 74 VIKLN 78 (82)
T ss_pred eeEee
Confidence 65543
No 60
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=33.27 E-value=28 Score=37.87 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=25.2
Q ss_pred hhhhhhc-ccHHHHHHhHhccCCCCCCcCCCCCC
Q 041546 447 WGSKYFK-NNFKRLVHVKTMVDPYDFFKNEQSIP 479 (490)
Q Consensus 447 ~g~~yfg-~n~~RL~~vK~kyDP~n~F~~~qsI~ 479 (490)
|-...|+ +.++-+++||+.+||+|+++-.--|+
T Consensus 440 ~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 440 QMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 3344555 67999999999999999997655543
No 61
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=31.62 E-value=50 Score=30.97 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCCCCC
Q 041546 99 VQAAIKCSKKHGLQIRVRSGGHDFEGL 125 (490)
Q Consensus 99 V~~~v~~a~~~~~~v~v~ggGh~~~g~ 125 (490)
....++|++++++|+.|.++|.++...
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI~ 104 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFIY 104 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHH
Confidence 456789999999999999999996443
No 62
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=28.96 E-value=58 Score=34.58 Aligned_cols=57 Identities=26% Similarity=0.479 Sum_probs=35.2
Q ss_pred eEecCCCCChHHHhhhcccccccCCCCCCCccEEEecCCH------HHHHHHHHHHHhcC-CcE--EEEcCCC
Q 041546 57 VIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDV------SQVQAAIKCSKKHG-LQI--RVRSGGH 120 (490)
Q Consensus 57 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~------~dV~~~v~~a~~~~-~~v--~v~ggGh 120 (490)
.|-.|....-.+.+. .-..||. .-..+|+|..+ ++|.++|+.+++.+ +.+ ..||||+
T Consensus 140 VITS~tgAairDIl~--~~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 140 VITSPTGAALRDILH--TLSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred EEcCCchHHHHHHHH--HHHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 333455555666654 3355774 23567777765 68999999999876 444 4455553
No 63
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=25.79 E-value=41 Score=36.85 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHHHHhHhccCCCCCCcCC
Q 041546 456 FKRLVHVKTMVDPYDFFKNE 475 (490)
Q Consensus 456 ~~RL~~vK~kyDP~n~F~~~ 475 (490)
+++..+|++++||+++|.|+
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 78999999999999999875
No 64
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.35 E-value=88 Score=29.13 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=30.8
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEE
Q 041546 78 RFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRV 115 (490)
Q Consensus 78 r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v 115 (490)
||-. ...|..+|...+++++.++.+.|+..|++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 5765 46899999999999999999999999986543
No 65
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=24.32 E-value=43 Score=37.01 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=18.9
Q ss_pred HHHHHHhHhccCCCCCCcCC
Q 041546 456 FKRLVHVKTMVDPYDFFKNE 475 (490)
Q Consensus 456 ~~RL~~vK~kyDP~n~F~~~ 475 (490)
+++..+|++++||+++|.|+
T Consensus 545 ~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 545 VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHHHHHHHHhCCCCccCCH
Confidence 99999999999999999875
No 66
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=24.07 E-value=1.1e+02 Score=27.35 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=26.3
Q ss_pred cEEEecCCHHHHHHHHHHHHhcCCcEEEEc
Q 041546 88 QVIITPLDVSQVQAAIKCSKKHGLQIRVRS 117 (490)
Q Consensus 88 ~~vv~P~s~~dV~~~v~~a~~~~~~v~v~g 117 (490)
..|+.|.+.+|+..+++.|-+..-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 368999999999999999998877888773
No 67
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.15 E-value=54 Score=34.91 Aligned_cols=57 Identities=26% Similarity=0.380 Sum_probs=36.1
Q ss_pred eEecCCCCChHHHhhhcccccccCCCCCCCccEEEecCCH------HHHHHHHHHHHhc---CCcEEEEcCCC
Q 041546 57 VIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDV------SQVQAAIKCSKKH---GLQIRVRSGGH 120 (490)
Q Consensus 57 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~------~dV~~~v~~a~~~---~~~v~v~ggGh 120 (490)
.|-.|+...+.+.+. .-+.||.. -..+++|..+ .+|.++++.+++. ++=|.+||||+
T Consensus 134 vits~~~aa~~D~~~--~~~~r~p~-----~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 134 VITSQTGAALADILH--ILKRRDPS-----LKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred EEeCCccHHHHHHHH--HHHhhCCC-----ceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 344466677888765 33567742 2455666544 6888888888763 44567777775
No 68
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=22.72 E-value=1e+02 Score=25.79 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=29.5
Q ss_pred Ccc-EEEecCCHHHHHHHHHHHHhcCCcEEEEcCC
Q 041546 86 KPQ-VIITPLDVSQVQAAIKCSKKHGLQIRVRSGG 119 (490)
Q Consensus 86 ~P~-~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggG 119 (490)
.|. .+|.+.+-.|++.++..|.+.|+|+...+.-
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 565 6788888899999999999999999998754
No 69
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.76 E-value=1.4e+02 Score=29.50 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=42.4
Q ss_pred CcceEecCCCCChHHHhhhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 041546 54 ISKVIYTQINSSYSSVLNFSIQNLRFSTPNTPKPQVIITPLDVSQVQAAIKCSKKHGLQIRVRSGGHD 121 (490)
Q Consensus 54 ~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v~ggGh~ 121 (490)
|.|.+...+.....+.+.......+ ...+.|.++++|+++++.|.++ ..+.+.+||=+
T Consensus 14 L~G~ivdtNa~~la~~L~~~G~~v~---------~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLG 71 (255)
T COG1058 14 LSGRIVDTNAAFLADELTELGVDLA---------RITTVGDNPDRIVEALREASER-ADVVITTGGLG 71 (255)
T ss_pred ecCceecchHHHHHHHHHhcCceEE---------EEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcC
Confidence 5666666555555555543333222 4678899999999999999999 89999999855
No 70
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=20.51 E-value=2.9e+02 Score=21.29 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=42.3
Q ss_pred EEeCCCCEEEEcCCCChHHHHHHHHhhccCCccccccccccceeeeEEEccCCceeeccCcchhhhhhhcccc
Q 041546 145 SVDAAEQTAWVQAGATLGQLYYRIAEKRYGAMLRKYGLAADNIVDARLTDANGRLLDRKSMGEDLFWAIQGGG 217 (490)
Q Consensus 145 ~vd~~~~~v~v~aG~~~~~l~~~l~~~g~G~~~~~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~ 217 (490)
.+..+...+.+..++++.+|...+.+ +++... .-..+...+.+|+.+...+ ..||-.|++-..
T Consensus 7 ~~~~~~~~~~~~~~~s~~dL~~~i~~--------~~~~~~-~~~~l~Y~Dedgd~v~l~s-d~Dl~~a~~~~~ 69 (81)
T smart00666 7 RYGGETRRLSVPRDISFEDLRSKVAK--------RFGLDN-QSFTLKYQDEDGDLVSLTS-DEDLEEAIEEYD 69 (81)
T ss_pred EECCEEEEEEECCCCCHHHHHHHHHH--------HhCCCC-CCeEEEEECCCCCEEEecC-HHHHHHHHHHHH
Confidence 34334456788899999999988865 444432 3346677799999887433 357777776433
No 71
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=20.41 E-value=1.5e+02 Score=27.12 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=26.1
Q ss_pred cEEEecCCHHHHHHHHHHHHh--cCCcEEEEcC
Q 041546 88 QVIITPLDVSQVQAAIKCSKK--HGLQIRVRSG 118 (490)
Q Consensus 88 ~~vv~P~s~~dV~~~v~~a~~--~~~~v~v~gg 118 (490)
..|+.|.+.+|+..+++.+-+ .+-|+.+|-.
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 579999999999999999999 5678888754
Done!