BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041549
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 143 bits (360), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 109/204 (53%), Gaps = 14/204 (6%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
SA ICPE+RH + G+E ADS + NPH W L N DC +W+K S++V++ + +++
Sbjct: 276 SAFICPEYRHLMKGIESADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHD 335
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
S+ DY+ WQI L RRF+ALKLW V+R +G L HIR N AK+F
Sbjct: 336 MQGSAP--------DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGD 387
Query: 125 MVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLS------LTQATLGGVYVIRCSI 178
+ D RFE LVCFRLK E + + L +++ L A + VY +R +I
Sbjct: 388 LCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAI 447
Query: 179 GTTLTQDRHIDDLRKLIQEKADRL 202
+ TQ ++ K + AD +
Sbjct: 448 CSRFTQSEDMEYSWKEVSAAADEM 471
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 102/193 (52%), Gaps = 18/193 (9%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
SA ICPEFRH LNGVE ADS + NPHKW L N DC +WVK + L + +++
Sbjct: 277 SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHS 336
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
S T DY+ WQ+ L RRF++LK+W V R +G GL +IR V ++ FEA
Sbjct: 337 HQGSGLIT------DYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390
Query: 125 MVAKDERFETVEPRKCALVCFRLKPKRESDG---------SELNQLSLTQATLGGVYVIR 175
V +D RFE LVCFRLK SDG + ++ L L G +V+R
Sbjct: 391 FVLQDPRFEVCAEVTLGLVCFRLK---GSDGLNEALLERINSARKIHLVPCRLRGQFVLR 447
Query: 176 CSIGTTLTQDRHI 188
+I + + H+
Sbjct: 448 FAICSRKVESGHV 460
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 110/205 (53%), Gaps = 12/205 (5%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
SA ICPEFRH LNGVE ADS + NPHKW L N DC +WVK + L + +++
Sbjct: 277 SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHS 336
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
S T DY+ WQI L RRF++LK+W V R +G GL +IR V ++ FE+
Sbjct: 337 HQDSGLIT------DYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFES 390
Query: 125 MVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLS------LTQATLGGVYVIRCSI 178
+V +D RFE LVCFRLK + + + L +++ L L +V+R +I
Sbjct: 391 LVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAI 450
Query: 179 GTTLTQDRHIDDLRKLIQEKADRLL 203
+ + H+ + I+E A +L
Sbjct: 451 CSRTVESAHVQRAWEHIKELAADVL 475
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 109/205 (53%), Gaps = 12/205 (5%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
SA ICPEFRH LNGVE ADS + NPH W L N DC +WVK + L + +++
Sbjct: 277 SAFICPEFRHLLNGVEFADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHS 336
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
S T DY+ WQI L RRF++LK+W V R +G GL +IR V ++ FE+
Sbjct: 337 HQDSGLIT------DYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFES 390
Query: 125 MVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLS------LTQATLGGVYVIRCSI 178
+V +D RFE LVCFRLK + + + L +++ L L +V+R +I
Sbjct: 391 LVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAI 450
Query: 179 GTTLTQDRHIDDLRKLIQEKADRLL 203
+ + H+ + I+E A +L
Sbjct: 451 CSRTVESAHVQRAWEHIKELAADVL 475
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 105/205 (51%), Gaps = 14/205 (6%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
+A +CPEFR +L G+E ADS + NP KW + + DC WVK L + S +R+
Sbjct: 283 TAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHA 342
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
+ +T D+ WQI LSRRF+++KLW VIR G L H+R MAK FE+
Sbjct: 343 NSGVAT--------DFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFES 394
Query: 125 MVAKDERFETVEPRKCALVCFRLK-PKRESDG-----SELNQLSLTQATLGGVYVIRCSI 178
+V D FE R LV FRLK P ++ ++ +L L AT+ +IR ++
Sbjct: 395 LVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTV 454
Query: 179 GTTLTQDRHIDDLRKLIQEKADRLL 203
+ T I LI++ A +L
Sbjct: 455 TSQFTTRDDILRDWNLIRDAATLIL 479
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 13 RHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDS-QSTKSDIMRNRSPASSTS 71
RH L+G++ ADSV+ NPHK + C L ++ +S L+ +++ + + +
Sbjct: 309 RHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVA 368
Query: 72 TNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDER 131
+D D + RR LKLW + + G GL I +A+ + K E
Sbjct: 369 ------LDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREG 422
Query: 132 FETVEPRKCALVCFRLKP 149
FE V + VCF P
Sbjct: 423 FELVMEPEFVNVCFWFVP 440
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 53/141 (37%), Gaps = 10/141 (7%)
Query: 13 RHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTST 72
RH LNG+E A+SV+ NPH + C + VK L + + + S
Sbjct: 298 RHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVS- 356
Query: 73 NVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERF 132
D D I R K W + + G G I + +A+ A + E F
Sbjct: 357 -----YDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF 411
Query: 133 ETV---EPRKCALVCFRLKPK 150
E V EP VCF P+
Sbjct: 412 EMVFNGEPEHTN-VCFWYIPQ 431
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 52/141 (36%), Gaps = 10/141 (7%)
Query: 13 RHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTST 72
RH LNG+E A+SV+ NPH + C + VK L + + S
Sbjct: 295 RHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVS- 353
Query: 73 NVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERF 132
D D I R K W + + G G I + +A+ A + E F
Sbjct: 354 -----YDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEF 408
Query: 133 ETV---EPRKCALVCFRLKPK 150
E V EP VCF P+
Sbjct: 409 EMVFNGEPEHTN-VCFWYIPQ 428
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 11/177 (6%)
Query: 2 AYRSACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIM 61
AY A I + L GVE A S+S++ HK F + CG L LV+ +S ++
Sbjct: 296 AYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGAL-------LVNDKSNFKFLL 348
Query: 62 RNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKR 121
+ + + ++D IA ++RF ALK++ + G L +
Sbjct: 349 HHADYLNREHDELPNLVDK---SIATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLE 405
Query: 122 FEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLSLTQATLGGVYVIRCSI 178
+ +++FE + + V FR +D ELN+ +A G+ V+ +I
Sbjct: 406 VADXIRTNDQFELLAEPSLSTVLFR-ATHETADLDELNKALRLEALTRGIAVLGETI 461
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 10/137 (7%)
Query: 16 LNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVA 75
L+GVE A+SV+ NPH + C L V+ + + + + + S
Sbjct: 294 LSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLS---- 349
Query: 76 PVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV 135
D D + R KLW + R G +G H+ + +A+ ++ E +E V
Sbjct: 350 --YDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMV 407
Query: 136 ---EPRKCALVCFRLKP 149
+P+ VCF P
Sbjct: 408 FDGKPQHTN-VCFWYIP 423
>pdb|3IBM|A Chain A, Crystal Structure Of Cupin 2 Domain-Containing Protein
Hhal_0468 From Halorhodospira Halophila
pdb|3IBM|B Chain B, Crystal Structure Of Cupin 2 Domain-Containing Protein
Hhal_0468 From Halorhodospira Halophila
Length = 167
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVC 144
+ GY+ L H + V M R A V D+R E + P C +
Sbjct: 63 VEPGGYTTLERHEHTHVVMVVRGHAEVVLDDRVEPLTPLDCVYIA 107
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 83 WQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDV-----NMAKRFEAMVAKD 129
W++ LS RFK L LW LM H + + N+ F M+A D
Sbjct: 123 WKLVLSGRFKFLDLWNTF-------LMEHHKRSIPRDTWNLLLDFGNMIADD 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,999,340
Number of Sequences: 62578
Number of extensions: 213751
Number of successful extensions: 393
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 12
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)